Query 012056
Match_columns 472
No_of_seqs 263 out of 1545
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 2E-102 6E-107 823.0 32.7 420 20-451 21-455 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 3.6E-89 1.2E-93 691.2 31.8 309 92-443 2-316 (319)
3 1pfk_A Phosphofructokinase; tr 100.0 4.3E-89 1.5E-93 690.9 31.7 309 92-443 3-318 (320)
4 3hno_A Pyrophosphate-dependent 100.0 2.5E-88 8.5E-93 707.1 30.8 332 91-436 3-366 (419)
5 4a3s_A 6-phosphofructokinase; 100.0 6.6E-88 2.3E-92 683.2 31.1 311 92-445 2-318 (319)
6 3o8l_A 6-phosphofructokinase, 100.0 3.5E-87 1.2E-91 737.6 25.5 395 19-443 317-745 (762)
7 3o8o_A 6-phosphofructokinase s 100.0 6.5E-87 2.2E-91 735.7 27.3 396 19-443 307-762 (787)
8 3o8o_B 6-phosphofructokinase s 100.0 3.8E-87 1.3E-91 737.6 25.3 396 19-443 307-752 (766)
9 3opy_B 6-phosphofructo-1-kinas 100.0 5E-87 1.7E-91 744.2 25.1 396 19-443 485-928 (941)
10 2f48_A Diphosphate--fructose-6 100.0 4.8E-84 1.6E-88 694.0 33.7 368 72-443 56-514 (555)
11 3opy_A 6-phosphofructo-1-kinas 100.0 4.2E-85 1.4E-89 727.0 26.3 397 19-444 512-974 (989)
12 3o8l_A 6-phosphofructokinase, 100.0 3.8E-83 1.3E-87 705.4 26.5 342 90-459 14-385 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 9.9E-81 3.4E-85 686.6 31.1 342 91-460 3-376 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 8.1E-81 2.8E-85 687.2 27.0 342 90-460 4-376 (787)
15 3opy_A 6-phosphofructo-1-kinas 100.0 4.7E-80 1.6E-84 686.5 29.7 341 90-459 209-580 (989)
16 3opy_B 6-phosphofructo-1-kinas 100.0 3.8E-80 1.3E-84 689.0 27.6 341 91-459 181-553 (941)
17 2an1_A Putative kinase; struct 95.0 0.026 8.9E-07 55.3 5.9 112 92-249 6-119 (292)
18 3g1w_A Sugar ABC transporter; 93.0 3.7 0.00013 38.8 16.5 174 90-310 3-185 (305)
19 2i2c_A Probable inorganic poly 93.0 0.042 1.5E-06 53.6 2.8 66 170-248 18-92 (272)
20 1z0s_A Probable inorganic poly 90.3 0.067 2.3E-06 52.8 0.8 64 169-248 42-122 (278)
21 3kjx_A Transcriptional regulat 90.2 10 0.00036 36.6 16.6 85 91-215 68-153 (344)
22 3gv0_A Transcriptional regulat 89.4 8.2 0.00028 36.2 14.8 123 90-261 7-134 (288)
23 3h5o_A Transcriptional regulat 89.0 7.3 0.00025 37.6 14.4 168 91-309 62-236 (339)
24 3egc_A Putative ribose operon 88.3 4 0.00014 38.3 11.7 125 90-261 7-132 (291)
25 3k4h_A Putative transcriptiona 88.2 5.8 0.0002 37.0 12.7 123 90-262 7-139 (292)
26 3dbi_A Sugar-binding transcrip 88.0 12 0.0004 36.0 15.1 124 91-261 61-188 (338)
27 3o74_A Fructose transport syst 86.8 19 0.00063 33.0 16.3 166 92-309 3-176 (272)
28 3qk7_A Transcriptional regulat 86.3 8 0.00027 36.4 12.6 92 168-273 53-152 (294)
29 1yt5_A Inorganic polyphosphate 84.8 0.21 7.3E-06 48.1 0.5 54 179-248 40-95 (258)
30 3brq_A HTH-type transcriptiona 82.5 30 0.001 31.9 15.7 123 91-261 19-146 (296)
31 3l49_A ABC sugar (ribose) tran 82.2 15 0.00052 34.0 12.4 128 90-260 4-131 (291)
32 3kke_A LACI family transcripti 82.2 15 0.00051 34.7 12.5 133 91-273 15-157 (303)
33 1u0t_A Inorganic polyphosphate 82.1 0.43 1.5E-05 47.1 1.5 34 178-216 73-106 (307)
34 3hcw_A Maltose operon transcri 79.5 12 0.00042 35.1 10.8 77 170-262 58-139 (295)
35 2o20_A Catabolite control prot 77.6 50 0.0017 31.4 15.5 68 91-192 63-131 (332)
36 3e3m_A Transcriptional regulat 77.6 32 0.0011 33.2 13.5 167 91-309 70-247 (355)
37 3k9c_A Transcriptional regulat 76.4 39 0.0013 31.4 13.3 134 91-274 12-152 (289)
38 3m9w_A D-xylose-binding peripl 75.9 46 0.0016 31.2 13.7 140 91-274 2-150 (313)
39 3pfn_A NAD kinase; structural 73.5 1.5 5E-05 44.8 2.4 130 84-248 31-163 (365)
40 3gyb_A Transcriptional regulat 73.4 55 0.0019 29.9 14.6 162 91-310 5-174 (280)
41 3gbv_A Putative LACI-family tr 71.2 26 0.00089 32.5 10.6 184 90-319 7-209 (304)
42 2qv7_A Diacylglycerol kinase D 71.0 3.6 0.00012 40.8 4.6 51 171-224 71-121 (337)
43 2bon_A Lipid kinase; DAG kinas 70.7 7.5 0.00026 38.4 6.9 51 171-224 73-125 (332)
44 3bbl_A Regulatory protein of L 69.6 70 0.0024 29.5 17.1 123 91-262 4-133 (287)
45 1jq5_A Glycerol dehydrogenase; 67.8 5.8 0.0002 39.8 5.4 57 168-234 74-130 (370)
46 3h75_A Periplasmic sugar-bindi 67.5 88 0.003 29.9 15.2 29 91-119 3-32 (350)
47 3afo_A NADH kinase POS5; alpha 66.0 1.3 4.6E-05 45.4 0.3 55 179-248 113-170 (388)
48 1dbq_A Purine repressor; trans 66.0 75 0.0026 29.1 12.5 122 91-261 7-133 (289)
49 3d8u_A PURR transcriptional re 65.2 81 0.0028 28.6 15.5 123 92-262 4-128 (275)
50 3l6u_A ABC-type sugar transpor 64.3 87 0.003 28.7 13.9 103 90-233 7-111 (293)
51 3uhj_A Probable glycerol dehyd 64.2 6.9 0.00024 39.9 5.2 54 168-231 94-147 (387)
52 3ksm_A ABC-type sugar transpor 63.9 84 0.0029 28.4 13.4 172 92-310 1-185 (276)
53 2fep_A Catabolite control prot 63.6 80 0.0027 29.2 12.3 122 91-262 16-141 (289)
54 2vk2_A YTFQ, ABC transporter p 62.0 78 0.0027 29.5 12.0 68 91-192 2-70 (306)
55 3tb6_A Arabinose metabolism tr 60.6 81 0.0028 28.9 11.7 128 92-262 16-145 (298)
56 3s40_A Diacylglycerol kinase; 59.9 4.7 0.00016 39.3 2.9 86 168-266 52-137 (304)
57 2dri_A D-ribose-binding protei 59.9 97 0.0033 28.2 12.1 139 92-274 2-150 (271)
58 3lup_A DEGV family protein; PS 59.3 1E+02 0.0035 29.7 12.4 164 90-277 2-187 (285)
59 3bil_A Probable LACI-family tr 56.7 61 0.0021 31.2 10.5 76 170-261 112-191 (348)
60 3s4y_A Thiamin pyrophosphokina 55.8 49 0.0017 31.5 9.3 94 90-192 19-134 (247)
61 3rot_A ABC sugar transporter, 54.4 51 0.0018 30.7 9.2 69 91-192 3-73 (297)
62 3uug_A Multiple sugar-binding 53.9 1.4E+02 0.0049 27.8 12.6 102 91-233 3-107 (330)
63 3iv7_A Alcohol dehydrogenase I 53.8 12 0.00039 37.9 4.7 47 168-219 76-122 (364)
64 2rgy_A Transcriptional regulat 53.6 1.4E+02 0.0047 27.5 14.6 124 91-262 8-136 (290)
65 1oj7_A Hypothetical oxidoreduc 52.6 9.5 0.00033 38.9 3.9 53 168-220 94-162 (408)
66 3clh_A 3-dehydroquinate syntha 52.1 4.6 0.00016 40.3 1.4 49 168-219 70-121 (343)
67 3l8m_A Probable thiamine pyrop 51.2 36 0.0012 31.6 7.3 68 124-192 23-101 (212)
68 3jzd_A Iron-containing alcohol 50.9 13 0.00043 37.5 4.4 47 168-219 77-123 (358)
69 3ox4_A Alcohol dehydrogenase 2 50.6 15 0.00052 37.1 5.0 55 168-222 76-143 (383)
70 1qpz_A PURA, protein (purine n 50.2 1.7E+02 0.0059 27.7 16.5 122 91-261 58-184 (340)
71 3hl0_A Maleylacetate reductase 50.1 16 0.00055 36.6 5.0 47 168-219 75-121 (353)
72 2fqx_A Membrane lipoprotein TM 49.7 1.8E+02 0.0061 27.7 20.5 23 168-190 50-72 (318)
73 3okf_A 3-dehydroquinate syntha 49.5 4.5 0.00015 41.5 0.8 63 168-236 108-173 (390)
74 3lkb_A Probable branched-chain 48.4 56 0.0019 31.6 8.7 102 105-215 125-230 (392)
75 1rrm_A Lactaldehyde reductase; 47.6 17 0.00058 36.6 4.7 53 168-220 76-143 (386)
76 3clk_A Transcription regulator 45.7 85 0.0029 28.9 9.1 123 91-261 8-132 (290)
77 2gru_A 2-deoxy-scyllo-inosose 45.4 6.3 0.00022 39.7 1.1 63 168-236 79-144 (368)
78 3jvd_A Transcriptional regulat 45.4 58 0.002 31.1 8.1 65 91-189 64-128 (333)
79 3bfj_A 1,3-propanediol oxidore 43.1 23 0.00078 35.7 4.9 52 168-219 80-144 (387)
80 3g85_A Transcriptional regulat 42.5 55 0.0019 30.1 7.2 125 90-262 10-135 (289)
81 1o2d_A Alcohol dehydrogenase, 41.6 14 0.00047 37.2 3.0 55 168-222 86-153 (371)
82 3rf7_A Iron-containing alcohol 41.4 21 0.0007 36.2 4.2 53 168-220 94-162 (375)
83 1ujn_A Dehydroquinate synthase 39.6 9.3 0.00032 38.2 1.3 49 168-219 69-120 (348)
84 2qu7_A Putative transcriptiona 39.2 82 0.0028 28.9 7.9 68 90-192 7-75 (288)
85 3e61_A Putative transcriptiona 39.1 80 0.0027 28.8 7.7 121 91-261 8-129 (277)
86 3o1i_D Periplasmic protein TOR 38.2 84 0.0029 28.9 7.8 69 91-192 5-75 (304)
87 1vlj_A NADH-dependent butanol 37.8 22 0.00076 36.1 3.8 53 168-220 89-154 (407)
88 2hsg_A Glucose-resistance amyl 36.9 89 0.003 29.6 7.9 124 91-262 60-185 (332)
89 8abp_A L-arabinose-binding pro 36.5 1.7E+02 0.0058 26.9 9.7 87 91-215 2-88 (306)
90 3trh_A Phosphoribosylaminoimid 36.3 47 0.0016 30.1 5.3 51 161-218 42-93 (169)
91 3nav_A Tryptophan synthase alp 36.0 2.1E+02 0.0071 27.5 10.3 136 169-320 7-160 (271)
92 3ors_A N5-carboxyaminoimidazol 35.0 40 0.0014 30.4 4.6 51 162-219 40-91 (163)
93 1kq3_A Glycerol dehydrogenase; 34.6 14 0.00048 37.1 1.7 53 168-231 83-135 (376)
94 1xah_A Sadhqs, 3-dehydroquinat 33.8 35 0.0012 33.9 4.5 49 168-219 75-126 (354)
95 3vnd_A TSA, tryptophan synthas 33.7 1.9E+02 0.0065 27.7 9.6 138 169-321 5-159 (267)
96 3nyi_A FAT acid-binding protei 33.7 58 0.002 31.7 6.0 110 142-263 44-171 (297)
97 1uta_A FTSN, MSGA, cell divisi 33.4 52 0.0018 25.3 4.5 51 161-211 15-74 (81)
98 3ipc_A ABC transporter, substr 33.3 1.1E+02 0.0036 29.0 7.8 103 104-215 119-225 (356)
99 1ta9_A Glycerol dehydrogenase; 32.3 17 0.00057 37.8 1.9 58 168-236 134-191 (450)
100 3kuu_A Phosphoribosylaminoimid 31.9 39 0.0013 30.8 4.0 50 162-218 49-99 (174)
101 3cqj_A L-ribulose-5-phosphate 31.8 2.5E+02 0.0086 25.9 10.1 52 166-217 29-89 (295)
102 3qbe_A 3-dehydroquinate syntha 31.4 12 0.00042 37.9 0.6 50 168-220 88-140 (368)
103 2h3h_A Sugar ABC transporter, 30.6 3.3E+02 0.011 25.2 11.8 82 170-263 47-132 (313)
104 1x60_A Sporulation-specific N- 30.5 58 0.002 24.7 4.4 49 161-209 15-72 (79)
105 3ce9_A Glycerol dehydrogenase; 30.3 22 0.00074 35.3 2.2 49 168-222 77-125 (354)
106 3fst_A 5,10-methylenetetrahydr 30.1 80 0.0027 31.0 6.3 88 125-216 54-153 (304)
107 3c3k_A Alanine racemase; struc 29.2 3.3E+02 0.011 24.8 10.8 121 91-262 8-132 (285)
108 3td9_A Branched chain amino ac 28.5 2.8E+02 0.0094 26.2 9.9 104 104-215 130-236 (366)
109 1tjy_A Sugar transport protein 28.3 3.6E+02 0.012 25.1 10.6 126 92-261 4-135 (316)
110 3miz_A Putative transcriptiona 27.2 1E+02 0.0035 28.6 6.3 135 91-273 13-157 (301)
111 1mgp_A Hypothetical protein TM 26.8 69 0.0024 31.6 5.2 108 83-202 18-133 (313)
112 2qip_A Protein of unknown func 26.3 84 0.0029 27.5 5.2 50 167-219 94-145 (165)
113 2fn9_A Ribose ABC transporter, 26.1 3.7E+02 0.013 24.3 14.9 67 92-192 3-70 (290)
114 3apt_A Methylenetetrahydrofola 26.0 41 0.0014 33.1 3.4 88 125-216 44-150 (310)
115 3lp6_A Phosphoribosylaminoimid 25.8 52 0.0018 30.0 3.7 53 161-220 43-96 (174)
116 4grd_A N5-CAIR mutase, phospho 25.3 43 0.0015 30.5 3.0 52 160-218 47-99 (173)
117 1usg_A Leucine-specific bindin 25.2 2.7E+02 0.0091 25.9 9.0 61 152-215 162-225 (346)
118 1sg6_A Pentafunctional AROM po 25.1 44 0.0015 33.7 3.5 49 168-219 88-141 (393)
119 2yxb_A Coenzyme B12-dependent 24.7 2.4E+02 0.0082 24.5 7.9 87 91-192 18-110 (161)
120 1cz3_A Dihydrofolate reductase 24.2 32 0.0011 30.2 2.0 48 167-221 80-129 (168)
121 4af0_A Inosine-5'-monophosphat 23.9 1.4E+02 0.0047 32.0 7.0 102 171-288 311-414 (556)
122 3huu_A Transcription regulator 23.9 1.8E+02 0.006 27.0 7.4 90 169-274 72-171 (305)
123 2fvy_A D-galactose-binding per 23.7 2.7E+02 0.0092 25.4 8.6 87 92-215 3-90 (309)
124 3hs3_A Ribose operon repressor 23.4 63 0.0022 29.7 4.0 118 90-261 9-129 (277)
125 2lnd_A De novo designed protei 22.8 1.2E+02 0.004 24.4 4.7 57 152-209 23-79 (112)
126 1vdr_A DHFR, dihydrofolate red 22.6 28 0.00095 30.6 1.2 51 168-225 81-131 (162)
127 2rjo_A Twin-arginine transloca 22.5 1.9E+02 0.0063 27.3 7.3 88 91-216 5-95 (332)
128 2iks_A DNA-binding transcripti 21.6 4.5E+02 0.016 23.8 10.7 126 90-262 19-146 (293)
129 1iv0_A Hypothetical protein; r 21.2 66 0.0022 26.2 3.2 28 196-223 40-67 (98)
130 3brs_A Periplasmic binding pro 21.1 3E+02 0.01 24.9 8.3 70 90-192 4-77 (289)
131 3jr7_A Uncharacterized EGV fam 21.0 2.7E+02 0.0092 26.9 8.2 147 92-263 20-183 (298)
132 4evq_A Putative ABC transporte 20.6 1.8E+02 0.0063 27.5 6.8 62 151-215 174-238 (375)
133 1wdp_A Beta-amylase; (beta/alp 20.5 2.8E+02 0.0095 29.2 8.4 96 169-264 35-181 (495)
134 3jy6_A Transcriptional regulat 20.4 4.7E+02 0.016 23.5 20.2 126 89-264 5-133 (276)
135 1pzx_A Hypothetical protein AP 20.2 1.7E+02 0.0058 28.2 6.5 100 92-204 3-108 (289)
136 1fa2_A Beta-amylase; TIM barre 20.2 2.4E+02 0.0084 29.6 7.9 96 169-264 36-182 (498)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1.6e-102 Score=822.98 Aligned_cols=420 Identities=38% Similarity=0.625 Sum_probs=375.9
Q ss_pred cccccchhhhCCC--CCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-------CCcccccccCCcccccccCC
Q 012056 20 LEDVPHLTDYIPD--LPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-------PRGTHFRRAGPRQKVYFVSD 90 (472)
Q Consensus 20 ~eav~al~~~~p~--~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-------~~~~~f~~~~~~~~~~~~~~ 90 (472)
++.|..+--.-|. .|.+++||..|.. ...||++++.|+..+....+. .....|+++|||+++||+++
T Consensus 21 ~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~~~ 96 (487)
T 2hig_A 21 LNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPT 96 (487)
T ss_dssp CSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEESSCGG
T ss_pred ccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcceeeecCC
Confidence 5666665333332 3788999976654 578999999998765432221 12346999999999999999
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---CCeeccChhHHhhhhhcCCcccccccCCC
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---KNTINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
.+||||+||||||||||++||++|+++...++..+||||++||+||++ +++++|+|++|++|+++|||+|||||+++
T Consensus 97 ~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~ 176 (487)
T 2hig_A 97 ETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQ 176 (487)
T ss_dssp GCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCCCSCC
T ss_pred CcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccCCCCC
Confidence 999999999999999999999999998765676799999999999964 68999999999999999999999999998
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~ 247 (472)
+.++++++|++++||+||+||||||+++|++|++++.+++++|+||||||||||||++||+|||||||+|+++++||+++
T Consensus 177 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaId~i~ 256 (487)
T 2hig_A 177 DPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAY 256 (487)
T ss_dssp CHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhH
Q 012056 248 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLA 327 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~~~ 327 (472)
+||.||++||||||||||+|||||+++|||++.||+|||||.||+++ +++++|++|++.++|++||||||+++.+..
T Consensus 257 ~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag~~~~~ 333 (487)
T 2hig_A 257 AEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGR 333 (487)
T ss_dssp HHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTTGGGCC
T ss_pred HHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCcccccc
Confidence 99999977899999999999999999999993399999999999988 799999999988899999999999765442
Q ss_pred HHHhhhhcccccCCccccchHHHHHHHHHHhhcccceee---eeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 012056 328 ESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMA---INLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 404 (472)
Q Consensus 328 ~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~---~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~ 404 (472)
. ...+|++||+++++++.+|+++|+++++.. ... +++|+++|||+|||++||++||+||++||.+||+++++
T Consensus 334 ~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~-g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~ 408 (487)
T 2hig_A 334 G----SGGYDASGNKKLIDIGVILTEKVKAFLKAN-KSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMA 408 (487)
T ss_dssp C------CBCTTSCBCCCCHHHHHHHHHHHHHHTT-TTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred c----ccccccccCcchhHHHHHHHHHHHHHHhhc-CccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 2 235799999999999999999999988421 112 27899999999999999999999999999999999999
Q ss_pred CCCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHHHHhcCCCC
Q 012056 405 GYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPS 451 (472)
Q Consensus 405 G~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l~~t~qp~ 451 (472)
|+||+||++++++++++||++++...|++++++.+|+++++.++||.
T Consensus 409 G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~ 455 (487)
T 2hig_A 409 GATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG 455 (487)
T ss_dssp TEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred CCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999986
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=3.6e-89 Score=691.16 Aligned_cols=309 Identities=27% Similarity=0.379 Sum_probs=285.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC----
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (472)
+||||+||||||||||++||++++.+.. + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-N-GLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-T-TCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 5999999999999999999999998863 4 469999999999999999999999999999999999999999863
Q ss_pred -ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 -~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+|+++++||++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999874 57899999999999999999999999999999999999
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 325 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~ 325 (472)
+++|+||+ ||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+.+
T Consensus 154 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 226 (319)
T 1zxx_A 154 RDTASSHH-RVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT-- 226 (319)
T ss_dssp HHHHHHTT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC--
T ss_pred HHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh--
Confidence 99999974 89999999999999999999999 899999999999987 799999999865 68999999999842
Q ss_pred hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 405 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G 405 (472)
+.+|+++|+++++ ++.|+.+|||+|||++||++||.||++||.+||+++++|
T Consensus 227 ----------------------~~~l~~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (319)
T 1zxx_A 227 ----------------------ADQFMAELKKYGD------FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEG 278 (319)
T ss_dssp ----------------------HHHHHHHHHHSSC------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHhhC------ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4578899988765 356788999999999999999999999999999999999
Q ss_pred CCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHH
Q 012056 406 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARV 443 (472)
Q Consensus 406 ~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~ 443 (472)
++|+||++++++++++||++++..+|+++++.....+.
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~~~~~~~~~~~~ 316 (319)
T 1zxx_A 279 KGGLAVGIENGKVTSHDILDLFDESHRGDYDLLKLNAD 316 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHTTCCCCCCTHHHHHHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998765554443
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=4.3e-89 Score=690.85 Aligned_cols=309 Identities=28% Similarity=0.398 Sum_probs=285.2
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC----
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (472)
+||||+||||||||||++||++++.+.+ + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-E-GLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 5999999999999999999999998863 4 479999999999999999999999999999999999999999853
Q ss_pred -ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 -~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+|+++++||++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999873 57899999999999999999999999999999999999
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 325 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~ 325 (472)
+++|+||+ ||||||||||+|||||+++|||+ +||+|||||.||+++ +++++|++++++ ++|++||||||+..
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~-- 227 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD-- 227 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSSC--
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcch--
Confidence 99999985 89999999999999999999999 899999999999987 799999999865 68999999999841
Q ss_pred hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 405 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G 405 (472)
+.+|+++|+++++. +.|+.+|||+|||++||++||.||++||.+||+++++|
T Consensus 228 ----------------------~~~la~~i~~~~~~------~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 279 (320)
T 1pfk_A 228 ----------------------VDELAHFIEKETGR------ETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAG 279 (320)
T ss_dssp ----------------------HHHHHHHHHHHHSS------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHhCC------eEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 45788999888653 46778899999999999999999999999999999999
Q ss_pred CCceEEEEECCeeeeechhhhh-hcCCccCccHHHHHHH
Q 012056 406 YTGFTVGPVNGRHAYIPFNRIN-ERQNQVVITDRMWARV 443 (472)
Q Consensus 406 ~tg~mvgi~~~~~~~vPl~~v~-~~~~~v~~~~~~~~~~ 443 (472)
++|+||++++++++++||++++ .+.|+++++...+.+.
T Consensus 280 ~~g~mv~~~~~~~~~~pl~~~~~~~~k~~~~~~~~~~~~ 318 (320)
T 1pfk_A 280 YGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKK 318 (320)
T ss_dssp CCSEEEEEETTEEEEEEHHHHHHHCCCCCCHHHHHHHHH
T ss_pred CCCEEEEEECCEEEEEEHHHHHhhCCCCCCHHHHHHHHH
Confidence 9999999999999999999999 8889898765555444
No 4
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=2.5e-88 Score=707.11 Aligned_cols=332 Identities=18% Similarity=0.269 Sum_probs=287.2
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCC--cEEEEEcccccccccCCeecc---ChhHHhhhhhcCCcccccccC
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGV--SKILGIDGGYRGFYSKNTINL---TPKVVNDIHKRGGTILGTSRG 165 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~--~~v~Gi~~G~~GL~~~~~~~L---~~~~v~~~~~~GGs~LGssR~ 165 (472)
++||+|+||||||||||++||++|+.+.. ++. .+||||++||+||+++++++| +|+++++|+++|||+|||||+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~-~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARK-QSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHH-HCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHH-cCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCC
Confidence 35999999999999999999999998864 332 299999999999999999888 555899999999999999998
Q ss_pred CC--------ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH
Q 012056 166 GH--------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (472)
Q Consensus 166 ~~--------~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~ 237 (472)
+. ++++++++|++++||+||+||||||+++|++|++++++++++|+|||||||||||+++||+|||||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 53 4789999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcc---eEEEEEecCCCcchHHHHHhhcc----CCcceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012056 238 EAQRAINAAHVEAESIEN---GIGVVKLMGRYCGFIAMYATLGS----RDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310 (472)
Q Consensus 238 ~~~~~i~~i~~~A~s~~~---rv~iVEvMGr~~G~LA~~aaLA~----~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 310 (472)
+++++|+++..++.|+++ ||||||||||+|||||+++|||+ .+||+|||||.||+++ ++++.|+++++++
T Consensus 162 ~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~ 238 (419)
T 3hno_A 162 YIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKF 238 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhC
Confidence 999999998444333333 89999999999999999999993 2899999999999987 7999999999888
Q ss_pred CcEEEEEeCCCCc---chhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCC--CCh
Q 012056 311 GHMVIVIAEGAGQ---DLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIP--SNA 385 (472)
Q Consensus 311 ~~~vIvvaEG~~~---~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~--p~a 385 (472)
++++||||||+.+ +++.+ ...+|+|||++|++++.+|+++|+++++. ++|+++|||+|||++ ||+
T Consensus 239 ~~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~g~------~~R~~~lGh~QRgg~p~ps~ 308 (419)
T 3hno_A 239 GYCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGLGL------KYHWGVADYLQRAARHIASK 308 (419)
T ss_dssp SCEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHHCC------CEEEEECTHHHHSCGGGCBH
T ss_pred CCEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHhCC------ceEEcccchhhccCCCCCCH
Confidence 8999999999875 33322 24589999999999999999999999873 467789999999999 899
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eeeeechhhhhhcCCccCcc
Q 012056 386 SDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINERQNQVVIT 436 (472)
Q Consensus 386 ~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~~~~~v~~~ 436 (472)
+||++|++||..||+++++|++|+||+++++ +++.+||+++++..|+|+++
T Consensus 309 ~Dr~la~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~~~ 366 (419)
T 3hno_A 309 TDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMPEN 366 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCCHH
Confidence 9999999999999999999999999999986 69999999999988887643
No 5
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=6.6e-88 Score=683.17 Aligned_cols=311 Identities=30% Similarity=0.422 Sum_probs=284.9
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-----
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG----- 166 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~----- 166 (472)
+|||||||||||||||++||++++.+. +.+.+||||++||+||+++++++|+|++|++|+++|||+|||||++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~--~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAI--YHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 599999999999999999999999875 3457999999999999999999999999999999999999999984
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
+++++++++|++++||+||+|||||||++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999863 47799999999999999999999999999999999999
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 325 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~ 325 (472)
+++|+|| +||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+...
T Consensus 154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~~- 227 (319)
T 4a3s_A 154 RDTATSH-ERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSG- 227 (319)
T ss_dssp HHHHHHH-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCCH-
T ss_pred Hhhhhcc-CCeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCcc-
Confidence 9999987 579999999999999999999999 899999999999988 788999988876 589999999999642
Q ss_pred hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 405 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G 405 (472)
.+++++++++++. ++|+.+|||+|||++|+++||++|++||.+||+++++|
T Consensus 228 -----------------------~~~~~~~~~~~g~------~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G 278 (319)
T 4a3s_A 228 -----------------------VEFGKRIEEETNL------ETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEG 278 (319)
T ss_dssp -----------------------HHHHHHHHHHHCC------CEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------hHHHHHHHHhCCc------eEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 2466777777763 46778899999999999999999999999999999999
Q ss_pred CCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHHHH
Q 012056 406 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLS 445 (472)
Q Consensus 406 ~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l~ 445 (472)
+||+||++++++++++||+++++.+|+++++.....+.|+
T Consensus 279 ~~g~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~a~~l~ 318 (319)
T 4a3s_A 279 KGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKELS 318 (319)
T ss_dssp CCSEEEEEETTEEEEEEHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCEEEEEeHHHHHhccCCCCHHHHHHHHhcC
Confidence 9999999999999999999999999999987655555543
No 6
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=3.5e-87 Score=737.56 Aligned_cols=395 Identities=20% Similarity=0.265 Sum_probs=343.1
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccC--------Ccccc
Q 012056 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PRQKV 85 (472)
Q Consensus 19 ~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~~~~~ 85 (472)
..+||.++++.+|+++.+++.+.+|++++.|++++++.++.|..++. +++| +|+.+|.+++ ++...
T Consensus 317 G~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~-~~~~~~a~~~rg~~f~~~~~~~~~~~~~~~~~ 395 (762)
T 3o8l_A 317 GVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMD-EKRFDEAMKLRGRSFMNNWEVYKLLAHIRPPA 395 (762)
T ss_dssp HHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHH-SSCHHHHHHHHCTHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhc-cchHHHHHHhhCchHHHHHHHHHHhcCCCCcc
Confidence 47899999999999999999999999999999999999999998874 5554 6888998764 11111
Q ss_pred cccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC
Q 012056 86 YFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG 165 (472)
Q Consensus 86 ~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~ 165 (472)
...+++||||+||||||||||++||++|+.+.. .+++||||++||+||+++++++|+|++|++|+++|||+|||+|+
T Consensus 396 -~~~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR~ 472 (762)
T 3o8l_A 396 -PKSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRT 472 (762)
T ss_dssp -CCSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEECC
T ss_pred -ccccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCCC
Confidence 113568999999999999999999999998853 35799999999999999999999999999999999999999998
Q ss_pred C--CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcC-CCceeeccccccccCccCcCcccCchhHHHHHHHH
Q 012056 166 G--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRA 242 (472)
Q Consensus 166 ~--~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~ 242 (472)
. +++++++++|++++||+||+||||||+++|++|++++.++. ++|+|||||||||||+++||+|||||||+|+++++
T Consensus 473 ~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~a 552 (762)
T 3o8l_A 473 LPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTT 552 (762)
T ss_dssp CSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHHH
Confidence 5 47899999999999999999999999999999999988764 68999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhC-CcEEEEEeCCC
Q 012056 243 INAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGA 321 (472)
Q Consensus 243 i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~-~~~vIvvaEG~ 321 (472)
||++++||.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++.+.++++.+|++++ ++++||||||+
T Consensus 553 id~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEga 631 (762)
T 3o8l_A 553 CDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKC 631 (762)
T ss_dssp HHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETTS
T ss_pred HHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 999999998777899999999999999999999999 8999999999999997767777788888764 67899999999
Q ss_pred CcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHH
Q 012056 322 GQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHG 401 (472)
Q Consensus 322 ~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~ 401 (472)
...+. ++++++.++++.. ..++.|...|||+||||.|+++||++|++||.+||++
T Consensus 632 ~~~~~---------------------~~~~~~~~~~~~~----~~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~ 686 (762)
T 3o8l_A 632 NENYT---------------------TDFIFNLYSEEGK----GIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNW 686 (762)
T ss_dssp CSSSC---------------------HHHHHHHHHHHTT----TTCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred Cccch---------------------HHHHHHHHHhhcc----CCceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 76443 2356666654311 1245677889999999999999999999999999999
Q ss_pred HHcC---------------CCceEEEEECCeeeeechhhhhhcCC--ccCccHHHHHHH
Q 012056 402 AVAG---------------YTGFTVGPVNGRHAYIPFNRINERQN--QVVITDRMWARV 443 (472)
Q Consensus 402 ~~~G---------------~tg~mvgi~~~~~~~vPl~~v~~~~~--~v~~~~~~~~~~ 443 (472)
+++| .+++|||+++++++++||+++..... .-.|...||..+
T Consensus 687 l~~g~~~~~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~ 745 (762)
T 3o8l_A 687 MAGKIKESYRNGRIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKL 745 (762)
T ss_dssp HHHHHHTTBCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGT
T ss_pred HHhCccccccccccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhH
Confidence 9997 79999999999999999999876321 111455577554
No 7
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-87 Score=735.71 Aligned_cols=396 Identities=18% Similarity=0.223 Sum_probs=340.3
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccC--------Cc--c
Q 012056 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PR--Q 83 (472)
Q Consensus 19 ~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~~--~ 83 (472)
.++||.+|++..++++.+++.+.+|++++.|++++|..++.|.++|. +++| +|+++|.+++ ++ .
T Consensus 307 G~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~~ 385 (787)
T 3o8o_A 307 GVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIE-NKDFDKAISLRDTEFIELYENFLSTTVKDDGS 385 (787)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCTTHHHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-cCCHHHHHhccCHHHHHHHHHHHHhccCCCcc
Confidence 47899999999999999999999999999999999999999999985 6776 7999999986 11 1
Q ss_pred cccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCeeccChhHHhhhhhcCCccccc
Q 012056 84 KVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILGT 162 (472)
Q Consensus 84 ~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LGs 162 (472)
......+.+||||+||||||||||++||++|+++.. .+++||||++||+||+ ++++++|+|.+|++|+++|||+|||
T Consensus 386 ~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LGT 463 (787)
T 3o8o_A 386 ELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGT 463 (787)
T ss_dssp SCCCSSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTCC
T ss_pred ccCCcccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceecc
Confidence 111233468999999999999999999999998753 3579999999999999 8999999999999999999999999
Q ss_pred ccCC--CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcC-CCceeeccccccccCccCcCcccCchhHHHHH
Q 012056 163 SRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 239 (472)
Q Consensus 163 sR~~--~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~ 239 (472)
+|+. +++++++++|++++||+||+|||||||++|.+|++++.+++ ++|+||||||||||||++||+|||||||+|++
T Consensus 464 sR~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~~ 543 (787)
T 3o8o_A 464 NRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNAL 543 (787)
T ss_dssp BCCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHHH
Confidence 9984 37889999999999999999999999999999998765442 57899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh---C--CcEE
Q 012056 240 QRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE---N--GHMV 314 (472)
Q Consensus 240 ~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~---~--~~~v 314 (472)
+++||+|+++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.++++.++++. + .+.+
T Consensus 544 ~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~i 622 (787)
T 3o8o_A 544 VNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGKL 622 (787)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHHHHHHHHHHHHHHHHHCCSCSSCCEE
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceE
Confidence 999999999998867899999999999999999999999 899999999999999555555555556542 2 3489
Q ss_pred EEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHH
Q 012056 315 IVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLL 394 (472)
Q Consensus 315 IvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~l 394 (472)
|+++||+...+. +.+|++.|+++++. .++.|...|||+||||.||++||++|++|
T Consensus 623 ivvaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~ 677 (787)
T 3o8o_A 623 LVRNEQASSVYS---------------------TQLLADIISEASKG----KFGVRTAIPGHVQQGGVPSSKDRVTASRF 677 (787)
T ss_dssp EEEETTSCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEEBCGGGGGCSSCCHHHHHHHHHH
T ss_pred EEEeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEecccccccCCCCCHHHHHHHHHH
Confidence 999999864332 45788888877531 24567789999999999999999999999
Q ss_pred HHHHHHHHHcCC---------------------------------CceEEEEECCeeeeechhhhhhcCCcc---CccHH
Q 012056 395 AQSAVHGAVAGY---------------------------------TGFTVGPVNGRHAYIPFNRINERQNQV---VITDR 438 (472)
Q Consensus 395 G~~AV~~~~~G~---------------------------------tg~mvgi~~~~~~~vPl~~v~~~~~~v---~~~~~ 438 (472)
|.+||+++++|. +++|+|+++++++++|++++.+..-.+ .|...
T Consensus 678 G~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~ 757 (787)
T 3o8o_A 678 AVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEV 757 (787)
T ss_dssp HHHHHHHHHHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCC
T ss_pred HHHHHHHHHhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcCh
Confidence 999999998876 689999999999999999987532111 14444
Q ss_pred HHHHH
Q 012056 439 MWARV 443 (472)
Q Consensus 439 ~~~~~ 443 (472)
||..+
T Consensus 758 ~w~~~ 762 (787)
T 3o8o_A 758 HWAEY 762 (787)
T ss_dssp CCHHH
T ss_pred HHHhH
Confidence 66554
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-87 Score=737.57 Aligned_cols=396 Identities=20% Similarity=0.227 Sum_probs=339.6
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccC--------Cc-cc
Q 012056 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PR-QK 84 (472)
Q Consensus 19 ~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~~-~~ 84 (472)
..+||.+|++..+++|.+++.+.+|++++.|++++|..++.|.++|. +++| +|+++|.+++ ++ .+
T Consensus 307 G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~~ 385 (766)
T 3o8o_B 307 GLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQ-AKDFKRAMSLRDTEFIEHLNNFMAINSADHNE 385 (766)
T ss_dssp HHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCTTHHHHHHHHHHHHHTTSST
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCccc
Confidence 47899999999999999999999999999999999999999999985 7776 7999999986 11 11
Q ss_pred -ccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEccccccccc-CCeeccChhHHhhhhhcCCccccc
Q 012056 85 -VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS-KNTINLTPKVVNDIHKRGGTILGT 162 (472)
Q Consensus 85 -~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~-~~~~~L~~~~v~~~~~~GGs~LGs 162 (472)
.....+.+||||+||||||||||++||++|+++.. .+++||||++||+||++ +++.+|+|.+|++|+++|||+|||
T Consensus 386 ~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LGT 463 (766)
T 3o8o_B 386 PKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMS--QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGT 463 (766)
T ss_dssp TCSSSSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTCC
T ss_pred ccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEcc
Confidence 11123357999999999999999999999998753 34799999999999997 789999999999999999999999
Q ss_pred ccCC---CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 163 SRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 163 sR~~---~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
+|+. .++++++++|++++||+||+|||||||++|.+|++++.++ .++|+|||||||||||+++||+|||||||+|+
T Consensus 464 sR~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~~ 543 (766)
T 3o8o_B 464 NRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNA 543 (766)
T ss_dssp CCCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHHH
Confidence 9984 3688999999999999999999999999999998765433 25689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHH--h---CCcE
Q 012056 239 AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLK--E---NGHM 313 (472)
Q Consensus 239 ~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~--~---~~~~ 313 (472)
++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++.+.+++++++++ + +.+.
T Consensus 544 ~~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 622 (766)
T 3o8o_B 544 LMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGK 622 (766)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhccCCCce
Confidence 9999999999998867899999999999999999999999 89999999999999955544555555554 1 3568
Q ss_pred EEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHH
Q 012056 314 VIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTL 393 (472)
Q Consensus 314 vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~ 393 (472)
+|++|||+...+. +.+|++.|+++.+. .++.|...|||+||||.|+++||++|++
T Consensus 623 iivvaEg~~~~~~---------------------~~~la~~i~~~~~~----~~e~R~tvLGhiQRGG~Ps~~DR~lAtr 677 (766)
T 3o8o_B 623 LILKSTNASKALS---------------------ATKLAEVITAEADG----RFDAKPAYPGHVQQGGLPSPIDRTRATR 677 (766)
T ss_dssp EEEEEGGGCSSCC---------------------HHHHHHHHHHHHTT----SCEEEEEBCGGGGGCSSCCHHHHHHHHH
T ss_pred EEEEeCCcCCCCc---------------------HHHHHHHHHHHhCC----CceEEEecccccccCCCCCHHHHHHHHH
Confidence 9999999854332 45788888877431 2456788999999999999999999999
Q ss_pred HHHHHHHHHHcCC----------------------CceEEEEECCeeeeechhhhhhcCCcc---CccHHHHHHH
Q 012056 394 LAQSAVHGAVAGY----------------------TGFTVGPVNGRHAYIPFNRINERQNQV---VITDRMWARV 443 (472)
Q Consensus 394 lG~~AV~~~~~G~----------------------tg~mvgi~~~~~~~vPl~~v~~~~~~v---~~~~~~~~~~ 443 (472)
||.+||+++++|+ +++|||+++++++++||+++.+....+ .|...||..+
T Consensus 678 ~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~ 752 (766)
T 3o8o_B 678 MAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQAT 752 (766)
T ss_dssp HHHHHHHHHHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHH
T ss_pred HHHHHHHHHHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhH
Confidence 9999999999999 899999999999999999987532111 1444566554
No 9
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=5e-87 Score=744.23 Aligned_cols=396 Identities=18% Similarity=0.212 Sum_probs=340.3
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccC--------Cc--c
Q 012056 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PR--Q 83 (472)
Q Consensus 19 ~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~~--~ 83 (472)
..+||.++++..++++.+++.+.+|++++.|++++|..++.|.++|. +++| +|+++|.+++ ++ .
T Consensus 485 G~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~-~~~f~~a~~lr~~~f~~~~~~~~~~~~~~~~~ 563 (941)
T 3opy_B 485 GVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIE-SRNFKKAISLRDSEFVEHMKNFISTNSADHVP 563 (941)
T ss_dssp HHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCHHHHHHHHHHHHHHC-CCSC
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCCcc
Confidence 47899999999999999999999999999999999999999999985 7776 7999999886 11 1
Q ss_pred cccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCeeccChhHHhhhhhcCCccccc
Q 012056 84 KVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILGT 162 (472)
Q Consensus 84 ~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LGs 162 (472)
......+++||||+||||||||||++||++|+++.. .+++||||++||+||+ ++++++|+|.+|++|+++|||+|||
T Consensus 564 ~~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLGT 641 (941)
T 3opy_B 564 PSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGT 641 (941)
T ss_dssp CSSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSCE
T ss_pred ccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEecc
Confidence 112234568999999999999999999999998753 3579999999999999 7999999999999999999999999
Q ss_pred ccCC---CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 163 SRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 163 sR~~---~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
+|+. .++++++++|++++||+||+|||||||++|.+|+++..++ .++|+|||||||||||+++||+|||||||+|+
T Consensus 642 sR~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~~ 721 (941)
T 3opy_B 642 NRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNS 721 (941)
T ss_dssp ECCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHHH
Confidence 9973 2688999999999999999999999999999998865444 35789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-----CCcE
Q 012056 239 AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-----NGHM 313 (472)
Q Consensus 239 ~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-----~~~~ 313 (472)
++++||+|+++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++.+.+++++++++. +.+.
T Consensus 722 i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~~~ 800 (941)
T 3opy_B 722 FMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGR 800 (941)
T ss_dssp HHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCCCE
T ss_pred HHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCCce
Confidence 9999999999998877899999999999999999999999 899999999999999655555556666642 2357
Q ss_pred EEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHH
Q 012056 314 VIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTL 393 (472)
Q Consensus 314 vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~ 393 (472)
+|+||||+...+. +.+|++.|+++++. .++.|...|||+||||.|+++||++|++
T Consensus 801 iIvvaEga~~~~~---------------------~~~la~~i~~~~~~----g~e~R~tvLGHiQRGG~Psa~DRilAtr 855 (941)
T 3opy_B 801 LILKSENASKVLT---------------------TEVISTIIDDEASG----RFDSKTAIPGHVQQGGIPSPMDRVRASR 855 (941)
T ss_dssp EEEEEGGGCSSSC---------------------HHHHHHHHHHHHTT----SSEEEEECCCTTTTCSSCCHHHHHHHHH
T ss_pred EEEEeCCccCCCC---------------------HHHHHHHHHHHhCC----CceeEEccccccccCCCCCHHHHHHHHH
Confidence 9999999864332 45788888887531 2456788999999999999999999999
Q ss_pred HHHHHHHHHHcCC--------------------CceEEEEECCeeeeechhhhhhcCCccC---ccHHHHHHH
Q 012056 394 LAQSAVHGAVAGY--------------------TGFTVGPVNGRHAYIPFNRINERQNQVV---ITDRMWARV 443 (472)
Q Consensus 394 lG~~AV~~~~~G~--------------------tg~mvgi~~~~~~~vPl~~v~~~~~~v~---~~~~~~~~~ 443 (472)
||.+||+++++|+ +++|||+++++++++||+++......+. |...||..+
T Consensus 856 ~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~ 928 (941)
T 3opy_B 856 FAIRAVSFIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNV 928 (941)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHH
T ss_pred HHHHHHHHHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhH
Confidence 9999999999998 8999999999999999999875422221 445567654
No 10
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=4.8e-84 Score=694.00 Aligned_cols=368 Identities=25% Similarity=0.332 Sum_probs=308.0
Q ss_pred CcccccccCCcccccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhh
Q 012056 72 RGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND 151 (472)
Q Consensus 72 ~~~~f~~~~~~~~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~ 151 (472)
+-..|.++.++. ..++.+||||+||||||||||++||++++.+...+++.+||||++||+||+++++++|+|++|++
T Consensus 56 p~~~~~~~~~~~---~~~~~~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~ 132 (555)
T 2f48_A 56 PIISFTEGESSL---SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINS 132 (555)
T ss_dssp CCEEEEESCCCC---SCCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHH
T ss_pred CcEEEecCCccc---ccCCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHH
Confidence 345566554421 13456899999999999999999999999876567788999999999999999999999999999
Q ss_pred hhhcCC-cccccccCCC----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc
Q 012056 152 IHKRGG-TILGTSRGGH----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI 226 (472)
Q Consensus 152 ~~~~GG-s~LGssR~~~----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt 226 (472)
|+++|| |+|||+|++. ++++++++|++++||+||+||||||+++|.+|++++.+++++|+|||||||||||+++|
T Consensus 133 i~~~GGstiLGssR~~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t 212 (555)
T 2f48_A 133 YRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRND 212 (555)
T ss_dssp HTTCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCS
T ss_pred HHhCCCCcCCCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCC
Confidence 999999 7999999853 47899999999999999999999999999999999999999999999999999999888
Q ss_pred --CcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCC----CCccch-hhH
Q 012056 227 --DKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP----FYLEGE-GGL 299 (472)
Q Consensus 227 --d~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~----~~l~~~-~~~ 299 (472)
|+|||||||+++++++|++++.||.|+++||||||||||+|||||+++|||+ +||+|||||+| ++++++ +.+
T Consensus 213 ~id~tiGFdTA~~~~~~aId~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i 291 (555)
T 2f48_A 213 HIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEM 291 (555)
T ss_dssp SCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHH
Confidence 9999999999999999999999999988889999999999999999999999 79999999986 565432 455
Q ss_pred HHHHHHHHHh-CCcEEEEEeCCCCcc------hhH-----------------------------------------HHHh
Q 012056 300 YEFIEKRLKE-NGHMVIVIAEGAGQD------LLA-----------------------------------------ESLQ 331 (472)
Q Consensus 300 ~~~i~~r~~~-~~~~vIvvaEG~~~~------~~~-----------------------------------------~~~~ 331 (472)
++.|++|..+ ++|+|||||||+... ++. +.+.
T Consensus 292 ~~~i~~r~~~gk~~~IIvVaEG~~~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~ 371 (555)
T 2f48_A 292 VSVILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQ 371 (555)
T ss_dssp HHHHHHHHHTTCCCEEEEEETTGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCccccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHH
Confidence 6666666654 689999999999531 000 0111
Q ss_pred hh-----hcccccCCccccch--HHHHHHHHHHhhcccce-----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHH
Q 012056 332 SM-----NQQDASGNKLLQDV--GLWISHKIKDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAV 399 (472)
Q Consensus 332 ~~-----~~~D~~G~~~l~~i--g~~l~~~I~~~~~~~~~-----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV 399 (472)
+. ..+|++||++|+++ +.+|+++|+++++.+.+ ..+..+...|||+|||+.||++||+||++||..||
T Consensus 372 ~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av 451 (555)
T 2f48_A 372 FELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAV 451 (555)
T ss_dssp HHHHHHHHTCCTTCCCCCTTSCHHHHHHHHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCCCCEeeccccHHHHHHHHHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHH
Confidence 10 25799999999998 45555555555432111 12445666799999999999999999999999999
Q ss_pred HHHHcCCCceEEEEECCe-------eeeechhhhhhcC------------CccCccHHHHHHH
Q 012056 400 HGAVAGYTGFTVGPVNGR-------HAYIPFNRINERQ------------NQVVITDRMWARV 443 (472)
Q Consensus 400 ~~~~~G~tg~mvgi~~~~-------~~~vPl~~v~~~~------------~~v~~~~~~~~~~ 443 (472)
+++++|+||+||+++|++ +..+||.++++.. +.||+++..|+.+
T Consensus 452 ~~~~~G~tG~mv~i~~~~~~~~~w~~~~vPl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~ 514 (555)
T 2f48_A 452 VLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEF 514 (555)
T ss_dssp HHHHTTCCSEEEEEECTTSCGGGCEEEEEEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHH
T ss_pred HHHHcCCCCEEEEEECCCCCccceEEEeeeHHHHhhhhhhcCccccceeeeeeCCCCHHHHHH
Confidence 999999999999999976 8899999988743 4577777776543
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.2e-85 Score=726.96 Aligned_cols=397 Identities=19% Similarity=0.227 Sum_probs=338.8
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccCC--------c--c
Q 012056 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R--Q 83 (472)
Q Consensus 19 ~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------~--~ 83 (472)
..+||.++++.+++++.+++.+.+|++++.|+++++..++.|.++|. +++| +|+++|.+++. + .
T Consensus 512 G~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~-~k~f~~a~~lr~~~F~~~~~~~~~~~~~~~~~ 590 (989)
T 3opy_A 512 GVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIE-AKDFDKALQLRDQEFATSYENFLSVSKYDDGS 590 (989)
T ss_dssp HHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCHHHHHHHHHHHHHHGGGGSS
T ss_pred HHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-ccCHHHHHhccChHHHHHHHHHHHhccCCCcc
Confidence 47899999999999999999999999999999999999999999985 6776 79999999861 1 1
Q ss_pred cccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCeeccChhHHhhhhhcCCccccc
Q 012056 84 KVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILGT 162 (472)
Q Consensus 84 ~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LGs 162 (472)
.....++++||||+||||||||||++||++|+++. +.+++||||++||+||+ ++++++|+|.+|++|+++|||+|||
T Consensus 591 ~~~p~~~~~rIgIltsGGdaPGmNAaIravV~~a~--~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLGT 668 (989)
T 3opy_A 591 YLVPESSRLNIAIIHVGAPTSALNPATRVATLNSL--AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGT 668 (989)
T ss_dssp SCCCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSCC
T ss_pred ccCCccCCceEEEEecCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEecc
Confidence 11123356899999999999999999999999875 34579999999999999 9999999999999999999999999
Q ss_pred ccCC--CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceeeccccccccCccCcCcccCchhHHHHH
Q 012056 163 SRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 239 (472)
Q Consensus 163 sR~~--~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~ 239 (472)
+|+. +++++++++|++++||+||+||||||+++|.+|++++.++ .++|+||||||||||||++||+|||||||+|++
T Consensus 669 sR~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~~ 748 (989)
T 3opy_A 669 NRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTL 748 (989)
T ss_dssp BCCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHHH
Confidence 9984 4789999999999999999999999999999999875544 257899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-----CCcEE
Q 012056 240 QRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-----NGHMV 314 (472)
Q Consensus 240 ~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-----~~~~v 314 (472)
+++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++. +.+++
T Consensus 749 ~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~~I 827 (989)
T 3opy_A 749 SGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKI 827 (989)
T ss_dssp HHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccceE
Confidence 999999999999877899999999999999999999999 899999999999999655555555566642 24579
Q ss_pred EEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHH
Q 012056 315 IVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLL 394 (472)
Q Consensus 315 IvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~l 394 (472)
||||||+...+. +.+|+++|+++.+. .++.|...|||+||||.|+++||++|++|
T Consensus 828 IvvaEga~~~~~---------------------~~~la~~i~e~~~~----~~e~R~tvLGHiQRGG~Psa~DRilAtr~ 882 (989)
T 3opy_A 828 FIHNEKASKVYT---------------------TDLIAAIIGEAGKG----RFESRTAVPGHVQQGKSPSSIDRVNACRL 882 (989)
T ss_dssp EEEESSSCSSSC---------------------HHHHHHHHHHTTTT----TSCEEEECCGGGGGCSSCCHHHHHHHHHH
T ss_pred EEEeCCCcCCCC---------------------HHHHHHHHHHhcCC----CceeEecccccccCCCCCCHHHHHHHHHH
Confidence 999999864332 45788999887531 14567789999999999999999999999
Q ss_pred HHHHHHHHHcCC---------------------------------------CceEEEEECCeeeeechhhhhhcCCcc--
Q 012056 395 AQSAVHGAVAGY---------------------------------------TGFTVGPVNGRHAYIPFNRINERQNQV-- 433 (472)
Q Consensus 395 G~~AV~~~~~G~---------------------------------------tg~mvgi~~~~~~~vPl~~v~~~~~~v-- 433 (472)
|.+||++++++. +..++|+++.++.+.|+.++......+
T Consensus 883 G~~Ave~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~ 962 (989)
T 3opy_A 883 AIKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKW 962 (989)
T ss_dssp HHHHHHHHTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC
T ss_pred HHHHHHHHHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhh
Confidence 999999999866 356899999999999999985322111
Q ss_pred -CccHHHHHHHH
Q 012056 434 -VITDRMWARVL 444 (472)
Q Consensus 434 -~~~~~~~~~~l 444 (472)
.|...||..+.
T Consensus 963 r~p~~~~W~~~~ 974 (989)
T 3opy_A 963 RKGKNVHWEQLN 974 (989)
T ss_dssp ----CCCCHHHH
T ss_pred CCCcChHHHhHH
Confidence 14445666553
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=3.8e-83 Score=705.44 Aligned_cols=342 Identities=22% Similarity=0.344 Sum_probs=307.4
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeccChhHHhhhhhcCCcccccccCCC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
+.+||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 35799999999999999999999999774 4568999999999999999 8999999999999999999999999863
Q ss_pred -----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHH-----------------HHHcCCCceeeccccccccCccC
Q 012056 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-----------------IRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~-----------------~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
++++++++|++++||+||+||||||+++|+.|+++ ..+++.+++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 46799999999999999999999999999988653 23345689999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHH
Q 012056 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEK 305 (472)
Q Consensus 226 td~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~ 305 (472)
||+|||||||+++++++||+|++||.|| +|+||||||||+|||||+++|||+ +||+|||||.||+++.++++++.|++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSH-QRTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSS-CCEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcC-ccEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999997 569999999999999999999999 89999999999999767789999988
Q ss_pred HHHh-CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCC
Q 012056 306 RLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSN 384 (472)
Q Consensus 306 r~~~-~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~ 384 (472)
+.++ +++++||||||+. |++|++.. +.+|++.|+++++. +.|+..|||+|||++|+
T Consensus 250 ~~~~gk~~~iVvVaEGa~--------------d~~G~~i~---~~~l~~~i~~~~g~------~~R~tvLGh~QRgg~Ps 306 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAI--------------DRNGKPIT---SEGVKDLVVRRLGY------DTRVTVLGHVQRGGTPS 306 (762)
T ss_dssp HHHTTCSCCBBCEETTCC--------------CSSSCCCC---HHHHHHHHHHHTCC------CEEEECCCSSTTCSCCC
T ss_pred HHHcCCCceEEEEeCCcc--------------CCCCCCcH---HHHHHHHHHHHhCC------CcceeecCccccCCCCC
Confidence 7765 4689999999983 66777665 56899999998864 35667899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC---CceEEEEECCeeeeechhhhhhcCCccCc--cHHHHHHHHHhcCCCCCCChHHHH
Q 012056 385 ASDNVYCTLLAQSAVHGAVAGY---TGFTVGPVNGRHAYIPFNRINERQNQVVI--TDRMWARVLSSTNQPSFLSANELA 459 (472)
Q Consensus 385 a~Dr~~a~~lG~~AV~~~~~G~---tg~mvgi~~~~~~~vPl~~v~~~~~~v~~--~~~~~~~~l~~t~qp~~~~~~~~~ 459 (472)
++||++|++||.+||+++++|+ +++||++++++++++||++++...|.|++ +...|.+.+..+|+ +|..+.+..
T Consensus 307 a~Dr~lat~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~-~f~~~~~~~ 385 (762)
T 3o8l_A 307 AFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGR-SFMNNWEVY 385 (762)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCc-hHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999898886 56689999999997 476654444
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-81 Score=686.60 Aligned_cols=342 Identities=22% Similarity=0.313 Sum_probs=294.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---eeccChhHHhhhhhcCCcccccccCCC
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
++||||+||||||||||++||++|+.+.. + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-K-GCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999998853 4 469999999999999986 789999999999999999999999853
Q ss_pred -----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHH-----------------HHHcCCCceeeccccccccCccC
Q 012056 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-----------------IRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~-----------------~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
++.+++++|++++||+||+||||||+++|++|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 35689999999999999999999999999988653 23345678999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccch-hhHHHHHH
Q 012056 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-GGLYEFIE 304 (472)
Q Consensus 226 td~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~-~~~~~~i~ 304 (472)
||+|||||||+++++++||+|++||.|| +|+||||||||+|||||+++|||+ +||+|||||.||+++++ +++++.++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 238 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSH-SRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVS 238 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999997 579999999999999999999999 89999999999999742 23444444
Q ss_pred HHHHh-CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCC
Q 012056 305 KRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPS 383 (472)
Q Consensus 305 ~r~~~-~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p 383 (472)
++.++ ++++|||||||+.+. .|+.. .+.+|++.|+++++. +.|...|||+|||++|
T Consensus 239 ~~~~~gk~~~IVvVaEGa~~~--------------~~~~~---~~~~l~~~i~~~~g~------~~R~tvLGh~QRGG~P 295 (766)
T 3o8o_B 239 KHRSRGKRTTIVVVAEGAIAA--------------DLTPI---SPSDVHKVLVDRLGL------DTRITTLGHVQRGGTA 295 (766)
T ss_dssp HHHHTTCCCEEEEEETTCBCT--------------TSCBC---CHHHHHHHHHHTTCC------CEEEEECGGGGTCSCC
T ss_pred HHHhcCCCceEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhCC------ceeEcccChhhcCCCC
Confidence 44333 478999999999642 22221 156888888887763 4566789999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeeeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHHH
Q 012056 384 NASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANEL 458 (472)
Q Consensus 384 ~a~Dr~~a~~lG~~AV~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~~~v~--~~~~~~~~~l~~t~qp~~~~~~~~ 458 (472)
+++||++|++||.+||+++++|++ |+||++++++++++||++++...|.|+ .+...|.+.++..+ ++|..+.+.
T Consensus 296 sa~DR~lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~~ 374 (766)
T 3o8o_B 296 VAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSLRD-TEFIEHLNN 374 (766)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-TTHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHccC-HHHHHHHHH
Confidence 999999999999999999999997 899999999999999999999888876 44667888877644 789877655
Q ss_pred HH
Q 012056 459 AK 460 (472)
Q Consensus 459 ~~ 460 (472)
++
T Consensus 375 ~~ 376 (766)
T 3o8o_B 375 FM 376 (766)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-81 Score=687.23 Aligned_cols=342 Identities=22% Similarity=0.326 Sum_probs=293.5
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeccChhHHhhhhhcCCcccccccCCC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
+++||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~--~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH--FGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 457999999999999999999999998853 457999999999999998 6999999999999999999999999853
Q ss_pred -----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHH-------HH----------HcCCCceeeccccccccCccC
Q 012056 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-------IR----------QRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~-------~~----------~~~~~i~vvgIPkTIDNDi~g 225 (472)
++.+++++|++++||+||+||||||+++|.+|+++ +. +++..++|||||||||||+++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 35689999999999999999999999999987642 32 234678999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccch-hhHHHHHH
Q 012056 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-GGLYEFIE 304 (472)
Q Consensus 226 td~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~-~~~~~~i~ 304 (472)
||+|||||||+++++++||+|+++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +++++.++
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 239 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQ 239 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999996 579999999999999999999999 89999999999999743 23444454
Q ss_pred HHHHh-CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCC
Q 012056 305 KRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPS 383 (472)
Q Consensus 305 ~r~~~-~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p 383 (472)
++.++ ++++|||||||+.+. .|+.. .+..+++.|++ ++. ..|...|||+|||++|
T Consensus 240 ~~~~~gk~~~IVvVaEGa~~~--------------~~~~~---~~~~~~~~i~~-~g~------~~R~tvLGh~QRGG~P 295 (787)
T 3o8o_A 240 RHRSKGRRNNTIIVAEGALDD--------------QLNPV---TANDVKDALIE-LGL------DTKVTILGHVQRGGTA 295 (787)
T ss_dssp HHHHTTCCCEEEEEETTCBBT--------------TSCBC---CHHHHHHHHHH-HTC------CEEEEECGGGGTCSCC
T ss_pred HHHhcCCCceEEEEeCCCccc--------------cCcch---hHHHHHHHHHH-hCC------cceeeccCHhhcCCCC
Confidence 44333 478999999999642 22221 14567788877 653 3456679999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeeeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHHH
Q 012056 384 NASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANEL 458 (472)
Q Consensus 384 ~a~Dr~~a~~lG~~AV~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~~~v~--~~~~~~~~~l~~t~qp~~~~~~~~ 458 (472)
+++||++|++||.+||+++++|.+ ++||++++++++++||++++.+.|.|+ .+...|.+.++..+ ++|..+.+.
T Consensus 296 sa~DRilAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~-~~f~~~~~~ 374 (787)
T 3o8o_A 296 VAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLRD-TEFIELYEN 374 (787)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-TTHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhccC-HHHHHHHHH
Confidence 999999999999999999999997 799999999999999999999888887 66778888887644 789877655
Q ss_pred HH
Q 012056 459 AK 460 (472)
Q Consensus 459 ~~ 460 (472)
++
T Consensus 375 ~~ 376 (787)
T 3o8o_A 375 FL 376 (787)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 15
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.7e-80 Score=686.50 Aligned_cols=341 Identities=21% Similarity=0.307 Sum_probs=291.3
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeccChhHHhhhhhcCCcccccccCCC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
..+||||+||||||||||++||++|+.+.. .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~~--~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIF--YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHH--TTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 357999999999999999999999998853 457999999999999998 5899999999999999999999999853
Q ss_pred -----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHH-------H----------HHcCCCceeeccccccccCccC
Q 012056 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-------I----------RQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~-------~----------~~~~~~i~vvgIPkTIDNDi~g 225 (472)
++++++++|++++||+||+||||||+++|++|+++ + .+.+..++|||||||||||+++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 36799999999999999999999999999998753 1 2234678999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHH-HHHH
Q 012056 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLY-EFIE 304 (472)
Q Consensus 226 td~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~-~~i~ 304 (472)
||+|||||||+++++++||+++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+++++.+.+ +.++
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 679999999999999999999999 899999999999997544333 3333
Q ss_pred HHHHh-CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCC
Q 012056 305 KRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPS 383 (472)
Q Consensus 305 ~r~~~-~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p 383 (472)
++.++ ++++|||||||+.+.. ++.. .+..+++.|++ ++ +.+|...|||+|||++|
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~--------------~~~i---~~~~l~~~l~~-~G------~dtR~tvLGHiQRGG~P 500 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQ--------------LNPI---TSEEVKDVLVE-IG------LDTRITRLGHVQRGGAP 500 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTT--------------SCBC---CHHHHHHHHHT-TT------CEEEEEECGGGGGCSCC
T ss_pred HHHhcCCCceEEEEeCCccccc--------------cccc---hHHHHHHHHHH-hC------cchhhhhhhHHHcCCCC
Confidence 33333 4689999999996422 2211 13467777765 54 34566789999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeeeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHHH
Q 012056 384 NASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANEL 458 (472)
Q Consensus 384 ~a~Dr~~a~~lG~~AV~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~~~v~--~~~~~~~~~l~~t~qp~~~~~~~~ 458 (472)
+++||++|++||.+||+++++|.+ |+|||+++++++++||++++.+.|.|+ .+...|.+.++..| ++|..+.+.
T Consensus 501 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~lr~-~~F~~~~~~ 579 (989)
T 3opy_A 501 CAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQLRD-QEFATSYEN 579 (989)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC-HHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhccC-hHHHHHHHH
Confidence 999999999999999999999985 899999999999999999999888887 56778888877644 788776555
Q ss_pred H
Q 012056 459 A 459 (472)
Q Consensus 459 ~ 459 (472)
+
T Consensus 580 ~ 580 (989)
T 3opy_A 580 F 580 (989)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.8e-80 Score=689.00 Aligned_cols=341 Identities=23% Similarity=0.327 Sum_probs=292.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---eeccChhHHhhhhhcCCcccccccCCC
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
.+||||+||||||||||++||++|+.+.. .+.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 181 ~krIgIlTsGGdaPGmNAaIRaVVr~a~~--~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~~ 258 (941)
T 3opy_B 181 RKTIGVMTSGGDSPGMNPFVRAVVRAGIY--KGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKE 258 (941)
T ss_dssp CCCEEEEECSSCCTTHHHHHHHHHHHHHH--TTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSG
T ss_pred CCEEEEEeeCcCchhHHHHHHHHHHHHHH--CCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCCc
Confidence 57999999999999999999999998853 4579999999999999986 889999999999999999999999853
Q ss_pred -----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHH-----------------HHHHcCCCceeeccccccccCccC
Q 012056 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE-----------------EIRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~-----------------~~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
++.+++++|++++||+||+||||||+++|.+|++ +..+++..++|||||||||||+++
T Consensus 259 f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 259 FRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 3568999999999999999999999999998764 234456678999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccch-hhHHHHHH
Q 012056 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-GGLYEFIE 304 (472)
Q Consensus 226 td~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~-~~~~~~i~ 304 (472)
||+|||||||+++++++||+|+++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +.+++.++
T Consensus 339 TD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i~ 416 (941)
T 3opy_B 339 TDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVG 416 (941)
T ss_dssp CSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 579999999999999999999999 89999999999999743 34555555
Q ss_pred HHHHh-CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCC
Q 012056 305 KRLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPS 383 (472)
Q Consensus 305 ~r~~~-~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p 383 (472)
++.++ ++++|||||||+.+. .|+.. .+.++++.|+++++. .+|...|||+|||++|
T Consensus 417 ~~~~~gk~~~IVVVAEGa~~~--------------~~~~i---~~~~l~~~i~~~~g~------d~R~tvLGhiQRGG~P 473 (941)
T 3opy_B 417 KHRARGKRKTIVIVAEGAISN--------------DLSPI---SCDQVKDVLVNRLGL------DTRVTTLGHVQRGGTA 473 (941)
T ss_dssp HHHHHTCCCEEEEECTTCBCT--------------TCCBC---CHHHHHHHHHHTSCC------EEEEEECGGGGTCSCC
T ss_pred HHHhcCCCcEEEEEeCCcccc--------------cCCcc---hHHHHHHHHHHHhCC------ceeecccChhhcCCCC
Confidence 54433 578999999999642 22222 156788888887653 4566789999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeeeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHHH
Q 012056 384 NASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANEL 458 (472)
Q Consensus 384 ~a~Dr~~a~~lG~~AV~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~~~v~--~~~~~~~~~l~~t~qp~~~~~~~~ 458 (472)
+++||++|++||.+||+++++|.+ |+||++++++++++||++++.+.|.|. .+...|.+.++..| ++|..+.+.
T Consensus 474 sa~DRilAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~~~f~~a~~lr~-~~f~~~~~~ 552 (941)
T 3opy_B 474 VAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKKAISLRD-SEFVEHMKN 552 (941)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHSC-HHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhcCCHHHHHHccC-HHHHHHHHH
Confidence 999999999999999999999997 799999999999999999999888776 34557777766644 677776554
Q ss_pred H
Q 012056 459 A 459 (472)
Q Consensus 459 ~ 459 (472)
+
T Consensus 553 ~ 553 (941)
T 3opy_B 553 F 553 (941)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=95.05 E-value=0.026 Score=55.27 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=60.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
+|++|+.-.+ .+..+..++.+.+.+.. . +.+++......+++- ..| ... ...+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~-~-g~~v~~~~~~~~~~~-----------------~~~----~~~--~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD-Q-GYEVIVEQQIAHELQ-----------------LKN----VPT--GTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH-T-TCEEEEEHHHHHHTT-----------------CSS----CCE--ECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH-C-CCEEEEecchhhhcc-----------------ccc----ccc--cchhh
Confidence 4799998755 36777788888887753 3 346765544333210 001 000 01111
Q ss_pred HHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHHh
Q 012056 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~~ 249 (472)
...+.|.+|++|||||+..+..... +.++|++|||. | |.||-|.+ +.+.++++.+...
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~~-------G---t~gfla~~~~~~~~~al~~i~~g 119 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGINR-------G---NLGFLTDLDPDNALQQLSDVLEG 119 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBCS-------S---SCCSSCCBCTTSHHHHHHHHHTT
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEEC-------C---CcccCCcCCHHHHHHHHHHHHcC
Confidence 2346899999999999877654322 23578999982 2 35555544 3345566666543
No 18
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=93.05 E-value=3.7 Score=38.76 Aligned_cols=174 Identities=9% Similarity=0.029 Sum_probs=93.3
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHD 168 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~ 168 (472)
+..+|+++.....-|=...+++++.+.+.. ++ .++.-+ ..+.. ...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 49 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LN-VTVEYR-------------------------------GAAQYDIQE 49 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSSCHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------CCCcCCHHH
Confidence 456899999888888888899998887753 33 233210 11111 122
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCchhHHHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~GfdTA~~~~~~~i~~i 246 (472)
..+.++.|...++|++|+.+.+.+.. ....+.+.+.+ +|+|. +|++++.. ..++++|-. .....+.+.+
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~----~~~~~~~~~~~~~V~~d~~-~~g~~~~~~l 120 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVL----FDSGAPDSHAHSFLGTNNY-NAGMNAAYKM 120 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEE----ESSCCTTSCCSCEEECCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEE----ECCCCCCCceeEEECcCHH-HHHHHHHHHH
Confidence 34677888889999999998776521 11223333445 45664 45555543 346666642 2223334444
Q ss_pred HHhhhcCcceEEEEEecC------CCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012056 247 HVEAESIENGIGVVKLMG------RYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMG------r~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 310 (472)
......+ ++|.++--.+ |..||........- ..+.+.+.+..++.+ .-.+.+.+-++..
T Consensus 121 ~~~~~g~-~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (305)
T 3g1w_A 121 AELLDGE-GEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDY 185 (305)
T ss_dssp HHHTTTC-EEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHC
T ss_pred HHHhCCC-cEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhC
Confidence 4333344 5788876443 33455544332211 234444444455544 3445555555554
No 19
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=93.02 E-value=0.042 Score=53.55 Aligned_cols=66 Identities=27% Similarity=0.325 Sum_probs=39.5
Q ss_pred HHHHHHHHHh-------CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHH
Q 012056 170 SKIVDSIQDR-------GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQ 240 (472)
Q Consensus 170 ~~i~~~l~~~-------~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~ 240 (472)
+++.+.|+++ +.|.+|++|||||+..|..... ....++|++|||. | |.||-|.+ +.+.
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~-------G---~lgfl~~~~~~~~~ 84 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT-------G---HLGFYADWRPAEAD 84 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES-------S---SCCSSCCBCGGGHH
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC-------C---CCCcCCcCCHHHHH
Confidence 3444445554 4599999999999976554321 1112678999974 2 45665442 3344
Q ss_pred HHHHHHHH
Q 012056 241 RAINAAHV 248 (472)
Q Consensus 241 ~~i~~i~~ 248 (472)
++++.+..
T Consensus 85 ~~l~~l~~ 92 (272)
T 2i2c_A 85 KLVKLLAK 92 (272)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555543
No 20
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=90.31 E-value=0.067 Score=52.77 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=43.2
Q ss_pred hHHHHHHHHHh---------------CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCch
Q 012056 169 TSKIVDSIQDR---------------GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD 233 (472)
Q Consensus 169 ~~~i~~~l~~~---------------~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~Gfd 233 (472)
.+++.+.|+++ +.|.+|++|||||+..|..... .. +||+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 55566666655 4688999999999965543321 23 88999974 288998
Q ss_pred hHH--HHHHHHHHHHHH
Q 012056 234 TAV--EEAQRAINAAHV 248 (472)
Q Consensus 234 TA~--~~~~~~i~~i~~ 248 (472)
|.+ +.+.++++++..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 765 344566666654
No 21
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=90.20 E-value=10 Score=36.56 Aligned_cols=85 Identities=12% Similarity=0.001 Sum_probs=52.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (472)
..+||++...-.-|=...+++++-+.+.. ++ .+++-. .+.. .+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 113 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TE-LQPVVG--------------------------------VTDYLPEKE 113 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SS-SEEEEE--------------------------------ECTTCHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899999776777778888888776642 22 233210 1111 1123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
.+.++.|...++|++|+.+-+.+-. +.+.+.+.++ |+|.+
T Consensus 114 ~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~i--PvV~i 153 (344)
T 3kjx_A 114 EKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAGI--PVVEI 153 (344)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCSS--CEEEE
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCCC--CEEEE
Confidence 4677888889999999998776542 2233444454 46654
No 22
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=89.42 E-value=8.2 Score=36.16 Aligned_cols=123 Identities=12% Similarity=-0.013 Sum_probs=65.5
Q ss_pred CCeeEEEEccCCCC--CchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC
Q 012056 90 DEVHACIVTCGGLC--PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 90 ~~~~iaIltsGG~a--pGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
+..+|||+...-.- |=...++.++-+.+.. ++ .++.-+ + +.....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~---------------~----------------~~~~~~ 53 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVT---------------P----------------HIHAKD 53 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEEC---------------C----------------BSSGGG
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEe---------------c----------------CCcchh
Confidence 34589999875443 7677778887766632 22 222200 0 000112
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchh--HHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDT--AVEEAQRAIN 244 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdT--A~~~~~~~i~ 244 (472)
...++.+.+...++|++|+.+.+.+-.. .+.+.+.+ +|+| ++|++.+..+ .++++|- +...+++
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV----~i~~~~~~~~~~~V~~D~~~~g~~a~~--- 120 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFV----THGRSDMGIEHAFHDFDNEAYAYEAVE--- 120 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEE----EESCCCSSCCCEEEEECHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEE----EECCcCCCCCCcEEEeCcHHHHHHHHH---
Confidence 2356667788899999999986654332 23334445 4566 4555554332 3555553 3333333
Q ss_pred HHHHhhhcCcceEEEEE
Q 012056 245 AAHVEAESIENGIGVVK 261 (472)
Q Consensus 245 ~i~~~A~s~~~rv~iVE 261 (472)
.+.. ..+ ++|.++-
T Consensus 121 ~L~~--~G~-~~I~~i~ 134 (288)
T 3gv0_A 121 RLAQ--CGR-KRIAVIV 134 (288)
T ss_dssp HHHH--TTC-CEEEEEC
T ss_pred HHHH--CCC-CeEEEEc
Confidence 3322 244 5677763
No 23
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=89.04 E-value=7.3 Score=37.60 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=84.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (472)
..+||++...-.-|-...+++++-+.+.. ++ .+++- ..+.. ....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AG-YQMLI--------------------------------GNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHHH
Confidence 35899999877778888888888877643 33 23321 01111 1123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHHh
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~ 249 (472)
.+.++.|...++|++|+.+-+.+-. +.+.+.+.+ +|+|.+ |+.......++++|-. .....+.+.+..
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~V~~D~~-~~~~~a~~~L~~- 175 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEP----FERILSQHA--LPVVYM----MDLADDGRCCVGFSQE-DAGAAITRHLLS- 175 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTT----HHHHHHHTT--CCEEEE----ESCCSSSCCEEECCHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE----eecCCCCCeEEEECHH-HHHHHHHHHHHH-
Confidence 4677888889999999999765542 223333445 456654 2211111125555532 112223333322
Q ss_pred hhcCcceEEEEEec------CCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh
Q 012056 250 AESIENGIGVVKLM------GRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 309 (472)
Q Consensus 250 A~s~~~rv~iVEvM------Gr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~ 309 (472)
..| ++|.++--. -|..||..+.....-...+..++.+..++.+ .-.+.+++-++.
T Consensus 176 -~G~-~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~ 236 (339)
T 3h5o_A 176 -RGK-RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQ---MGADMLDRALAE 236 (339)
T ss_dssp -TTC-CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHH---HHHHHHHHHHHH
T ss_pred -CCC-CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHH---HHHHHHHHHHcC
Confidence 254 568777432 2445665543322110123333445556554 233444444444
No 24
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=88.35 E-value=4 Score=38.28 Aligned_cols=125 Identities=10% Similarity=0.117 Sum_probs=68.2
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCCh
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (472)
+..+||++...-.-|=...++.++.+.+.. ++ .++.-+. +.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KG-YSVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 346899999877777777788888776643 33 2332110 00011123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i~~ 248 (472)
.+.++.|...++|++|+.+-+.... +.+.+.+. .+|+| ++|++++..+ .++++|-. .....+.+.+..
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~--~iPvV----~~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 122 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHD----YLRTELPK--TFPIV----AVNRELRIPGCGAVLSENV-RGARTAVEYLIA 122 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCT--TSCEE----EESSCCCCTTCEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhcc--CCCEE----EEecccCCCCCCEEEECcH-HHHHHHHHHHHH
Confidence 4678888899999999998876332 22222223 45566 4555554322 35555432 122223333332
Q ss_pred hhhcCcceEEEEE
Q 012056 249 EAESIENGIGVVK 261 (472)
Q Consensus 249 ~A~s~~~rv~iVE 261 (472)
..+ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (291)
T 3egc_A 123 --RGH-TRIGAIV 132 (291)
T ss_dssp --TTC-CSEEEEC
T ss_pred --cCC-CEEEEEe
Confidence 244 5677664
No 25
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=88.16 E-value=5.8 Score=37.00 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=70.2
Q ss_pred CCeeEEEEccC-----CCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCccccccc
Q 012056 90 DEVHACIVTCG-----GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (472)
Q Consensus 90 ~~~~iaIltsG-----G~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR 164 (472)
+..+||++... -.-|-...+++++.+.+.. ++ .++.- ..+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-YALYM--------------------------------STGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------CCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCC
Confidence 34589999987 6778888888888877753 33 23320 0011
Q ss_pred C-CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCchh--HHHHH
Q 012056 165 G-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDT--AVEEA 239 (472)
Q Consensus 165 ~-~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~GfdT--A~~~~ 239 (472)
. .+...++.+.+...++|++++.+.+.+-. ..+.+.+.+ +|+|. +|++.+.. -.++++|- +...+
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~----~~~~~~~~~~~~~V~~D~~~~g~~a 122 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVL----IGKPYDRKDEITYVDNDNYTAAREV 122 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEE----ESCCSSCTTTSCEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEE----ECCCCCCCCCCCEEEECcHHHHHHH
Confidence 1 11234678888899999999998775542 233344445 45663 45555443 23455553 33333
Q ss_pred HHHHHHHHHhhhcCcceEEEEEe
Q 012056 240 QRAINAAHVEAESIENGIGVVKL 262 (472)
Q Consensus 240 ~~~i~~i~~~A~s~~~rv~iVEv 262 (472)
++.+ .. ..+ ++|.++--
T Consensus 123 ~~~L---~~--~G~-~~i~~i~~ 139 (292)
T 3k4h_A 123 AEYL---IS--LGH-KQIAFIGG 139 (292)
T ss_dssp HHHH---HH--TTC-CCEEEEES
T ss_pred HHHH---HH--CCC-ceEEEEeC
Confidence 3333 22 244 56777753
No 26
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=88.02 E-value=12 Score=36.03 Aligned_cols=124 Identities=9% Similarity=0.032 Sum_probs=68.0
Q ss_pred CeeEEEEccC--CCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-C
Q 012056 91 EVHACIVTCG--GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-H 167 (472)
Q Consensus 91 ~~~iaIltsG--G~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~ 167 (472)
..+||++... -..|=...++.++.+.+.. ++ .++.-+ .+... .
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLLA--------------------------------DGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCChH
Confidence 4589999976 5667777788888777643 23 232210 11111 1
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i 246 (472)
...+.++.|...++|++|+.+.+.+... +.+.+.+.+ +|+| ++|.+++..+ .++++|-. .....+.+.+
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV----~~~~~~~~~~~~~V~~D~~-~~~~~a~~~L 176 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIM----VLNRRLRKNSSHSVWCDHK-QTSFNAVAEL 176 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEE----EESSCCSSSGGGEECBCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEE----EEcCCCCCCCCCEEEEChH-HHHHHHHHHH
Confidence 2335678888999999999987766432 333333334 4565 3455554422 34555532 1222233333
Q ss_pred HHhhhcCcceEEEEE
Q 012056 247 HVEAESIENGIGVVK 261 (472)
Q Consensus 247 ~~~A~s~~~rv~iVE 261 (472)
.. ..| ++|.++-
T Consensus 177 ~~--~G~-~~I~~i~ 188 (338)
T 3dbi_A 177 IN--AGH-QEIAFLT 188 (338)
T ss_dssp HH--TTC-CSEEEEC
T ss_pred HH--CCC-CEEEEEe
Confidence 32 254 5677763
No 27
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=86.79 E-value=19 Score=32.97 Aligned_cols=166 Identities=12% Similarity=0.148 Sum_probs=85.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
.+||++...-.-|=...+++++-+.+.. ++ .++.-+. +........+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RG-YQLLIAS-------------------------------SDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4899999877777788888888777643 33 2332110 0001112346
Q ss_pred HHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHHHHhh
Q 012056 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAAHVEA 250 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i~~~A 250 (472)
.++.|...++|++++.+.+.... ...+.+.+.+ +|+| ++|++++..+ .++++|-. .....+.+.+..
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~--iPvV----~~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~-- 117 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPED---DSYRELQDKG--LPVI----AIDRRLDPAHFCSVISDDR-DASRQLAASLLS-- 117 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTT--CCEE----EESSCCCTTTCEEEEECHH-HHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCEEEEecCccccH---HHHHHHHHcC--CCEE----EEccCCCccccCEEEEchH-HHHHHHHHHHHH--
Confidence 77888899999999998873321 1223344445 4566 4566554432 24555422 122233333332
Q ss_pred hcCcceEEEEEecC-------CCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh
Q 012056 251 ESIENGIGVVKLMG-------RYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 309 (472)
Q Consensus 251 ~s~~~rv~iVEvMG-------r~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~ 309 (472)
..+ +++.++--.- |..||.. ++...+.+...+....++.+ .-.+.+++-++.
T Consensus 118 ~G~-~~i~~i~~~~~~~~~~~R~~gf~~---~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 176 (272)
T 3o74_A 118 SAP-RSIALIGARPELSVSQARAGGFDE---ALQGYTGEVRRYQGEAFSRE---CGQRLMQQLIDD 176 (272)
T ss_dssp TCC-SEEEEEEECTTSHHHHHHHHHHHH---HTTTCCSEEEEEEESSSSHH---HHHHHHHHHHHH
T ss_pred CCC-cEEEEEecCCCCccHHHHHHHHHH---HHHHcCCChheeecCCCCHH---HHHHHHHHHHhc
Confidence 244 5677775322 2234443 33333444444444445544 333444444443
No 28
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=86.33 E-value=8 Score=36.41 Aligned_cols=92 Identities=11% Similarity=0.172 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i 246 (472)
...++.+.|...++|++|+.+.+.+-.. .+.+.+.++ |+|. +|++.+... .++++|-. .....+.+.+
T Consensus 53 ~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~i--PvV~----~~~~~~~~~~~~V~~D~~-~~~~~a~~~L 121 (294)
T 3qk7_A 53 KYQSLIHLVETRRVDALIVAHTQPEDFR----LQYLQKQNF--PFLA----LGRSHLPKPYAWFDFDNH-AGASLAVKRL 121 (294)
T ss_dssp CCHHHHHHHHHTCCSEEEECSCCSSCHH----HHHHHHTTC--CEEE----ESCCCCSSCCEEEEECHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhCCC--CEEE----ECCCCCCCCCCEEEcChH-HHHHHHHHHH
Confidence 3457788889999999999998765432 233444454 4653 444433222 24555431 1122233333
Q ss_pred HHhhhcCcceEEEEEecC-------CCcchHHHH
Q 012056 247 HVEAESIENGIGVVKLMG-------RYCGFIAMY 273 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMG-------r~~G~LA~~ 273 (472)
.. ..+ ++|.++--.- |..||..+.
T Consensus 122 ~~--~G~-~~I~~i~~~~~~~~~~~R~~Gf~~al 152 (294)
T 3qk7_A 122 LE--LGH-QRIAFVSTDARISYVDQRLQGYVQTM 152 (294)
T ss_dssp HH--TTC-CCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HH--CCC-ceEEEEeCCcccchHHHHHHHHHHHH
Confidence 22 254 5677775432 445665544
No 29
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=84.76 E-value=0.21 Score=48.15 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=34.7
Q ss_pred hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 179 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
.+.|.+|++|||||+..+..... + .+|++||+ + | |.||-|.+ +.+.++++.+..
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn-~------G---~~Gfl~~~~~~~~~~al~~i~~ 95 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFK-A------G---RLGFLTSYTLDEIDRFLEDLRN 95 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEE-S------S---SCCSSCCBCGGGHHHHHHHHHT
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEE-C------C---CCCccCcCCHHHHHHHHHHHHc
Confidence 46899999999999866543321 3 67899997 2 2 44666554 334455555543
No 30
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=82.51 E-value=30 Score=31.87 Aligned_cols=123 Identities=8% Similarity=0.016 Sum_probs=63.6
Q ss_pred CeeEEEEccC--CCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CC
Q 012056 91 EVHACIVTCG--GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (472)
Q Consensus 91 ~~~iaIltsG--G~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~ 167 (472)
..+||++... -..|-...++.++.+.+.. .+ .++.-+ .+.. ..
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~~ 64 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLLA--------------------------------DGKHSAE 64 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------CCTTSHH
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCHH
Confidence 4589999865 5667777788888776643 22 222100 0010 11
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-cCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-RGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINA 245 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~ 245 (472)
...+.++.|...++|++|+.+.+.+-. ..+.+.+ .+ +|+|.+ |.+.+... .++++|-.- ....+.+.
T Consensus 65 ~~~~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~~-~~~~a~~~ 133 (296)
T 3brq_A 65 EERQAIQYLLDLRCDAIMIYPRFLSVD----EIDDIIDAHS--QPIMVL----NRRLRKNSSHSVWCDHKQ-TSFNAVAE 133 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSCHH----HHHHHHHTCS--SCEEEE----SCCCSSSGGGEECCCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCChH----HHHHHHhcCC--CCEEEE----ccccCCCCCCEEEEchHH-HHHHHHHH
Confidence 234567778889999999998865432 1233444 44 456654 33333211 356655321 12223333
Q ss_pred HHHhhhcCcceEEEEE
Q 012056 246 AHVEAESIENGIGVVK 261 (472)
Q Consensus 246 i~~~A~s~~~rv~iVE 261 (472)
+.. ..+ ++|.++-
T Consensus 134 l~~--~G~-~~I~~i~ 146 (296)
T 3brq_A 134 LIN--AGH-QEIAFLT 146 (296)
T ss_dssp HHH--TTC-CSEEEEC
T ss_pred HHH--CCC-ceEEEEc
Confidence 332 244 5677774
No 31
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=82.24 E-value=15 Score=34.01 Aligned_cols=128 Identities=8% Similarity=0.048 Sum_probs=71.4
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCCh
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (472)
+..+||++...-.-|-...+++++.+.+.. ++ .++.-+ -+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LG-GTAIAL-------------------------------DAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------cCCCCHHHH
Confidence 446899999877777777788888777643 33 222211 011111223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHHh
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~ 249 (472)
.+.++.|...++|++|+.+.+.+.. ....+.+.+.++ |||.+ |++.+....++++|-. .....+.+.+...
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~i--PvV~~----~~~~~~~~~~V~~D~~-~~g~~~~~~l~~~ 121 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAGI--PLFTV----DTATPHAINNTTSNNY-SIGAELALQMVAD 121 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTTC--CEEEE----SCCCTTCSEEEEECHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCCC--cEEEe----cCCCCCcCceEecChH-HHHHHHHHHHHHH
Confidence 5677888899999999998874432 223344445554 56654 4444333345665542 1222333344433
Q ss_pred hhcCcceEEEE
Q 012056 250 AESIENGIGVV 260 (472)
Q Consensus 250 A~s~~~rv~iV 260 (472)
...+ ++|.++
T Consensus 122 ~~g~-~~i~~i 131 (291)
T 3l49_A 122 LGGK-GNVLVF 131 (291)
T ss_dssp HTTC-EEEEEE
T ss_pred cCCC-ceEEEE
Confidence 3454 567777
No 32
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=82.21 E-value=15 Score=34.69 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=72.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (472)
..+||++...-.-|=...+++++-+.+.. ++ .+++ +..+.. ....
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HS-TDVL--------------------------------LGQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 35899998877777788888888777643 22 2222 111111 1224
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchh--HHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT--AVEEAQRAINAAH 247 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdT--A~~~~~~~i~~i~ 247 (472)
.+.++.|...++|++|+.+.+.+... ..+.+.+ .+|+|.+ |++++..-.++++|- +...+++ .+.
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~---~iPvV~i----~~~~~~~~~~V~~D~~~~g~~a~~---~L~ 127 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE---GVPAVTI----NSRVPGRVGSVILDDQKGGGIATE---HLI 127 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT---TSCEEEE----SCCCTTCCCEEEECHHHHHHHHHH---HHH
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC---CCCEEEE----CCcCCCCCCEEEECcHHHHHHHHH---HHH
Confidence 56788899999999999998776430 2233333 4556644 444443123455442 2333333 332
Q ss_pred HhhhcCcceEEEEEec-C------CCcchHHHH
Q 012056 248 VEAESIENGIGVVKLM-G------RYCGFIAMY 273 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvM-G------r~~G~LA~~ 273 (472)
. ..+ ++|.++--. + |..||....
T Consensus 128 ~--~G~-~~I~~i~~~~~~~~~~~R~~Gf~~al 157 (303)
T 3kke_A 128 T--LGH-SRIAFISGTAIHDTAQRRKEGYLETL 157 (303)
T ss_dssp H--TTC-CSEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred H--CCC-CeEEEEeCCCcCccHHHHHHHHHHHH
Confidence 2 354 567777432 1 445666543
No 33
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=82.06 E-value=0.43 Score=47.14 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=23.9
Q ss_pred HhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccc
Q 012056 178 DRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (472)
Q Consensus 178 ~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (472)
..+.|.++++|||||+..|...... . +++++||+
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 3568999999999998776654332 2 46789997
No 34
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=79.50 E-value=12 Score=35.13 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc---CcccCch--hHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI---DKSFGFD--TAVEEAQRAIN 244 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt---d~S~Gfd--TA~~~~~~~i~ 244 (472)
.++++.|...++|++|+.+.+.+-. +.+.+.+.+ +|+| ++|++++.. -.++++| .+...+++.+
T Consensus 58 ~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV----~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L- 126 (295)
T 3hcw_A 58 DEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFI----VIGKPTSDIDHQFTHIDNDNILASENLTRHV- 126 (295)
T ss_dssp HHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEE----EESCCCSSGGGGSCEEEECHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEE----EECCCCccccCCceEEecCcHHHHHHHHHHH-
Confidence 4677888899999999998765432 223344445 4566 345665543 2345544 2344444433
Q ss_pred HHHHhhhcCcceEEEEEe
Q 012056 245 AAHVEAESIENGIGVVKL 262 (472)
Q Consensus 245 ~i~~~A~s~~~rv~iVEv 262 (472)
.. ..+ ++|.++--
T Consensus 127 --~~--~G~-~~I~~i~~ 139 (295)
T 3hcw_A 127 --IE--QGV-DELIFITE 139 (295)
T ss_dssp --HH--HCC-SEEEEEEE
T ss_pred --HH--cCC-ccEEEEcC
Confidence 22 354 57877753
No 35
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=77.56 E-value=50 Score=31.43 Aligned_cols=68 Identities=7% Similarity=0.108 Sum_probs=41.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (472)
..+||++...-..|-...++.++-+.+.. ++ .++.- ..+... ...
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~~ 108 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASM-YK-YNMIL--------------------------------ANSDNDVEKE 108 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EECCCChHHH
Confidence 45899998765566666777777766642 22 22220 011111 123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCc
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs 192 (472)
...++.|...++|++++.+.+.+
T Consensus 109 ~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 109 EKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCCC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC
Confidence 35677788899999999987554
No 36
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=77.55 E-value=32 Score=33.23 Aligned_cols=167 Identities=15% Similarity=0.123 Sum_probs=84.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (472)
..+||++...-.-|-...++.++-+.+.. ++ .+++- ..+.. ....
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 115 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GG-LQLLL--------------------------------GYTAYSPERE 115 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHHH
Confidence 35899998776667777788887776643 22 23321 01111 1123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC-cCcccCchhHHHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV-IDKSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g-td~S~GfdTA~~~~~~~i~~i~~ 248 (472)
.+.++.|...++|++|+.+.+.+-.. .+.+.+.+ +|+|.+ |+.... ...++++|-. .....+.+.+..
T Consensus 116 ~~~~~~l~~~~vdGiI~~~~~~~~~~----~~~l~~~~--iPvV~i----~~~~~~~~~~~V~~D~~-~~~~~a~~~L~~ 184 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLSYDGHTEQT----IRLLQRAS--IPIVEI----WEKPAHPIGHTVGFSNE-RAAYDMTNALLA 184 (355)
T ss_dssp HHHHHHHHHTCCSEEEEECSCCCHHH----HHHHHHCC--SCEEEE----SSCCSSCSSEEEECCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE----CCccCCCCCCEEEeChH-HHHHHHHHHHHH
Confidence 46778888999999999988766432 23344445 456654 221111 1235555431 122223333322
Q ss_pred hhhcCcceEEEEEec--------CCCcchHHHHHhhccCCcc-eEecCCCCCCccchhhHHHHHHHHHHh
Q 012056 249 EAESIENGIGVVKLM--------GRYCGFIAMYATLGSRDVD-CCLIPESPFYLEGEGGLYEFIEKRLKE 309 (472)
Q Consensus 249 ~A~s~~~rv~iVEvM--------Gr~~G~LA~~aaLA~~~ad-~ilIPE~~~~l~~~~~~~~~i~~r~~~ 309 (472)
..| ++|.++--. -|..||..+.....- ..+ .+.+.+.+++.+ .-.+.+.+-++.
T Consensus 185 --~G~-r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~---~~~~~~~~ll~~ 247 (355)
T 3e3m_A 185 --RGF-RKIVFLGEKDDDWTRGAARRAGFKRAMREAGL-NPDQEIRLGAPPLSIE---DGVAAAELILQE 247 (355)
T ss_dssp --TTC-CSEEEEEESSCTTSHHHHHHHHHHHHHHHTTS-CSCCEEEESCSSCCHH---HHHHHHHHHHHH
T ss_pred --CCC-CeEEEEccCcccChhHHHHHHHHHHHHHHCCc-CCCccEEEecCCCCHH---HHHHHHHHHHcC
Confidence 354 567777532 244566654433211 122 234444456554 233444444444
No 37
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=76.38 E-value=39 Score=31.43 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=71.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..+||++. .-.-|=...+++++-+.+.. ++ .++.-+ .+....+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 56 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATR-RG-YDVMLS--------------------------------AVAPSRAEK 56 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------EEBTTBCHH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899998 66667777788887776643 23 233211 111111245
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHHHHh
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAAHVE 249 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i~~~ 249 (472)
+.++.|...++|++|+.+.+.+-. ..+.+.+ + +|+|. +|++++..+ .++++|-. .....+.+.+..
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~-~--iPvV~----i~~~~~~~~~~~V~~D~~-~~~~~a~~~L~~- 123 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDTD----ELGALAD-R--VPALV----VARASGLPGVGAVRGDDV-AGITLAVDHLTE- 123 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT-T--SCEEE----ESSCCSSTTSEEEEECHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc-C--CCEEE----EcCCCCCCCCCEEEeChH-HHHHHHHHHHHH-
Confidence 677888889999999999877642 2233332 4 55664 455554322 34555431 112223333332
Q ss_pred hhcCcceEEEEEecC------CCcchHHHHH
Q 012056 250 AESIENGIGVVKLMG------RYCGFIAMYA 274 (472)
Q Consensus 250 A~s~~~rv~iVEvMG------r~~G~LA~~a 274 (472)
..+ ++|.++--.. |..||.....
T Consensus 124 -~G~-~~I~~i~~~~~~~~~~R~~Gf~~al~ 152 (289)
T 3k9c_A 124 -LGH-RNIAHIDGADAPGGADRRAGFLAAMD 152 (289)
T ss_dssp -TTC-CSEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred -CCC-CcEEEEeCCCCccHHHHHHHHHHHHH
Confidence 354 5687775332 3446655443
No 38
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=75.87 E-value=46 Score=31.24 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=77.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
+.+||++...-.-|-...+++++.+.+.. ++ .++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TS-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHH
Confidence 35899999877788888999998887753 33 23321 00100111234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC--cccCchhHHHHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~S~GfdTA~~~~~~~i~~i~~ 248 (472)
+.++.|...++|++++.+-+.+.. ....+.+.+.+ +|||. +|++++..+ .++++|-. .....+.+.+..
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~----~~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 119 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLA----YDRMINDADIDFYISFDNE-KVGELQAKALVD 119 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEE----ESSCCTTSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEE----ECCcCCCCCceEEEecCHH-HHHHHHHHHHHH
Confidence 677888889999999999876531 11223333334 56764 455554433 46777642 122223333331
Q ss_pred hhhcCcceEEEEEe-cC------CCcchHHHHH
Q 012056 249 EAESIENGIGVVKL-MG------RYCGFIAMYA 274 (472)
Q Consensus 249 ~A~s~~~rv~iVEv-MG------r~~G~LA~~a 274 (472)
...+ ++|.++-- .+ |..||.....
T Consensus 120 -~~G~-~~i~~i~g~~~~~~~~~R~~Gf~~~l~ 150 (313)
T 3m9w_A 120 -IVPQ-GNYFLMGGSPVDNNAKLFRAGQMKVLK 150 (313)
T ss_dssp -HCSS-EEEEEEESCTTCHHHHHHHHHHHHHHH
T ss_pred -hCCC-CcEEEEECCCCCccHHHHHHHHHHHHH
Confidence 1344 56777742 22 4456655443
No 39
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=73.48 E-value=1.5 Score=44.84 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=68.9
Q ss_pred cccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccCh-hHHhhhhhcCCccccc
Q 012056 84 KVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTP-KVVNDIHKRGGTILGT 162 (472)
Q Consensus 84 ~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~-~~v~~~~~~GGs~LGs 162 (472)
++.+.....+|+|++== ..|.+-..++.+++.+.. .+.+||-=..=.+-+ .+.. .....+... +-+
T Consensus 31 ~l~w~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~--~~~~V~ve~~~~~~~------~~~~~~~~~~~~~~----~~~ 97 (365)
T 3pfn_A 31 RLTWNKSPKSVLVIKKM-RDASLLQPFKELCTHLME--ENMIVYVEKKVLEDP------AIASDESFGAVKKK----FCT 97 (365)
T ss_dssp BEEESSCCCEEEEEECT-TCGGGHHHHHHHHHHHHH--TSCEEEEEHHHHHSH------HHHHCSTTHHHHHH----CEE
T ss_pred ccccCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH--CCCEEEEehHHhhhh------cccccccccccccc----ccc
Confidence 34444455699999842 356788888899888754 345665211100000 0000 000000000 000
Q ss_pred ccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHH
Q 012056 163 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQ 240 (472)
Q Consensus 163 sR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~ 240 (472)
.+ .+++.+ ..++|.+|++|||||+-.|..+.. +..+||+||=. -++||-|-+ +.+.
T Consensus 98 ~~--~~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~~ 155 (365)
T 3pfn_A 98 FR--EDYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENFQ 155 (365)
T ss_dssp EC--TTTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTHH
T ss_pred cc--cChhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHHH
Confidence 01 111111 247899999999999877665532 44678888842 388887753 3455
Q ss_pred HHHHHHHH
Q 012056 241 RAINAAHV 248 (472)
Q Consensus 241 ~~i~~i~~ 248 (472)
++++++..
T Consensus 156 ~~l~~vl~ 163 (365)
T 3pfn_A 156 SQVTQVIE 163 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66666554
No 40
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=73.40 E-value=55 Score=29.93 Aligned_cols=162 Identities=14% Similarity=0.016 Sum_probs=81.9
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..+||++...-.-|=...++.++.+.+.. ++ .++.-+ .+. ......
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~-~~~~~~ 50 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSVI-------------------------------DSL-TSQAGT 50 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEEE-------------------------------CSS-SSCSSS
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCC-CchHHH
Confidence 45899999877778888888888877643 33 233211 111 122334
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCc-cCc-CcccCchhHHHHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI-PVI-DKSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi-~gt-d~S~GfdTA~~~~~~~i~~i~~ 248 (472)
+.++.|...++|+++ ++.+.... .+.+ . .+|+|. +|++. ... ..++++|-. .....+.+.+..
T Consensus 51 ~~~~~l~~~~vdgiI-~~~~~~~~---~~~~----~--~iPvV~----~~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 115 (280)
T 3gyb_A 51 DPITSALSMRPDGII-IAQDIPDF---TVPD----S--LPPFVI----AGTRITQASTHDSVANDDF-RGAEIATKHLID 115 (280)
T ss_dssp CHHHHHHTTCCSEEE-EESCC-----------------CCCEEE----ESCCCSSSCSTTEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEE-ecCCCChh---hHhh----c--CCCEEE----ECCCCCCCCCCCEEEechH-HHHHHHHHHHHH
Confidence 667778889999999 88776532 1211 2 455664 45554 221 134555531 122233333332
Q ss_pred hhhcCcceEEEEEecC-----CCcchHHHHHhhccCCcceE-ecCCCCCCccchhhHHHHHHHHHHhC
Q 012056 249 EAESIENGIGVVKLMG-----RYCGFIAMYATLGSRDVDCC-LIPESPFYLEGEGGLYEFIEKRLKEN 310 (472)
Q Consensus 249 ~A~s~~~rv~iVEvMG-----r~~G~LA~~aaLA~~~ad~i-lIPE~~~~l~~~~~~~~~i~~r~~~~ 310 (472)
..+ ++|.++--.. |..||....... +.+.. .+....++.+ .-.+.+++.++..
T Consensus 116 --~G~-~~i~~i~~~~~~~~~R~~gf~~~l~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 174 (280)
T 3gyb_A 116 --LGH-THIAHLRVGSGAGLRRFESFEATMRAH---GLEPLSNDYLGPAVEH---AGYTETLALLKEH 174 (280)
T ss_dssp --TTC-CSEEEECCSSHHHHHHHHHHHHHHHHT---TCCCEECCCCSCCCHH---HHHHHHHHHHHHC
T ss_pred --CCC-CeEEEEeCCCchHHHHHHHHHHHHHHc---CcCCCcccccCCCCHH---HHHHHHHHHHhCC
Confidence 244 5677775433 455666544332 23322 1223344443 3444555555544
No 41
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=71.23 E-value=26 Score=32.48 Aligned_cols=184 Identities=11% Similarity=-0.018 Sum_probs=95.2
Q ss_pred CCeeEEEEccCC-CCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CC
Q 012056 90 DEVHACIVTCGG-LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (472)
Q Consensus 90 ~~~~iaIltsGG-~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~ 167 (472)
+..+||++...- .-|=...+++++-+.+.. .++..+.-... ..+.. ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~~g~~~~~~~~-----------------------------~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTT-YSDFNISANIT-----------------------------HYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHH-TGGGCEEEEEE-----------------------------EECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHH-HHhCCeEEEEE-----------------------------cCCCCCHH
Confidence 456899999776 788888888888877753 21122211000 00000 11
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCchh--HHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDT--AVEEAQRAI 243 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~GfdT--A~~~~~~~i 243 (472)
...+.++.|...++|++|+.+-+.... ..+.+.+.+.+ +|||. +|++++.. ..++++|- +...+++
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~----~~~~~~~~~~~~~V~~D~~~~g~~a~~-- 126 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYT--KGFTDALNELG--IPYIY----IDSQIKDAPPLAFFGQNSHQSGYFAAR-- 126 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGT--HHHHHHHHHHT--CCEEE----ESSCCTTSCCSEEEECCHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHH--HHHHHHHHHCC--CeEEE----EeCCCCCCCceEEEecChHHHHHHHHH--
Confidence 234667888889999999998875421 11223333445 45664 45555442 33555553 3333333
Q ss_pred HHHHHhhhcCcceEEEEEe-----------cCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhC--
Q 012056 244 NAAHVEAESIENGIGVVKL-----------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-- 310 (472)
Q Consensus 244 ~~i~~~A~s~~~rv~iVEv-----------MGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~-- 310 (472)
.+...... +++|.++-. .-|..||........- ..+...+.+..++.+ .-.+.+++-+++.
T Consensus 127 -~l~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 200 (304)
T 3gbv_A 127 -MLMLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFREHPD 200 (304)
T ss_dssp -HHHHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHHCTT
T ss_pred -HHHHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHhCCC
Confidence 33222211 256877752 3466677765544322 234444444455555 2344455555543
Q ss_pred CcEEEEEeC
Q 012056 311 GHMVIVIAE 319 (472)
Q Consensus 311 ~~~vIvvaE 319 (472)
-.+|+..+.
T Consensus 201 ~~ai~~~~d 209 (304)
T 3gbv_A 201 VKHGITFNS 209 (304)
T ss_dssp CCEEEESSS
T ss_pred eEEEEEcCc
Confidence 245554433
No 42
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=70.97 E-value=3.6 Score=40.76 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCcc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (472)
++++.+...+.|.++++|||||+..+..- +.+.+.++++.+||.==-||+.
T Consensus 71 ~~~~~~~~~~~d~vvv~GGDGTv~~v~~~---l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 71 LEAERAMHENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHTTTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHhhcCCCEEEEEcCchHHHHHHHH---HHhCCCCCcEEEecCCcHhHHH
Confidence 44444555678999999999998765432 2223557889999987677775
No 43
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=70.68 E-value=7.5 Score=38.40 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc--CCCceeeccccccccCcc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--GLKVAVAGIPKTIDNDIP 224 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~--~~~i~vvgIPkTIDNDi~ 224 (472)
++++.+...+.|.++++|||||+..+..- +.+. +.++++..||.==-||+.
T Consensus 73 ~~~~~~~~~~~d~vvv~GGDGTl~~v~~~---l~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 73 RYVEEARKFGVATVIAGGGDGTINEVSTA---LIQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHHHHHHHH---HHHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHhcCCCEEEEEccchHHHHHHHH---HhhcccCCCCeEEEecCcCHHHHH
Confidence 44444555679999999999998765432 2222 456788889976566664
No 44
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=69.64 E-value=70 Score=29.53 Aligned_cols=123 Identities=8% Similarity=-0.015 Sum_probs=66.1
Q ss_pred CeeEEEEccC-C---CCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC
Q 012056 91 EVHACIVTCG-G---LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG 166 (472)
Q Consensus 91 ~~~iaIltsG-G---~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~ 166 (472)
..+||++... - ..|-...+++++-+.+.. ++ .++. + .+ +....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~---------~------~~----------------~~~~~ 50 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-YFVL---------P------FP----------------FSEDR 50 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-CEEE---------E------CC----------------CCSST
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-CEEE---------E------Ee----------------CCCch
Confidence 3589999865 4 667777888888777643 22 2221 0 00 00111
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchh--HHHHHHHHH
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAI 243 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdT--A~~~~~~~i 243 (472)
....+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+ |++.+.. -.++++|- +...+++.+
T Consensus 51 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L 120 (287)
T 3bbl_A 51 SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAF----GRSNPDWDFAWVDIDGTAGTRQAVEYL 120 (287)
T ss_dssp TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEE----SCCSTTCCCCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEE----CCcCCCCCCCEEEeccHHHHHHHHHHH
Confidence 2335677888899999999998765432 223333444 456654 3333321 12455552 333333333
Q ss_pred HHHHHhhhcCcceEEEEEe
Q 012056 244 NAAHVEAESIENGIGVVKL 262 (472)
Q Consensus 244 ~~i~~~A~s~~~rv~iVEv 262 (472)
.. ..+ ++|.++--
T Consensus 121 ---~~--~G~-~~I~~i~~ 133 (287)
T 3bbl_A 121 ---IG--RGH-RRIAILAW 133 (287)
T ss_dssp ---HH--HTC-CCEEEEEC
T ss_pred ---HH--CCC-CeEEEEeC
Confidence 22 244 56877753
No 45
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=67.80 E-value=5.8 Score=39.77 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchh
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT 234 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdT 234 (472)
..+++++.+++++.|.+|-|||--.++.|..++-. + .+++|.||-| ++||.+.|--|
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTT-----a~tgSevt~~a 130 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---L--DAYIVIVPTA-----ASTDAPTSALS 130 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--TCEEEEEESS-----CCSSCTTCSEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---c--CCCEEEeccc-----cCCCcccCCeE
Confidence 35678888999999999999998888888877732 2 4679999999 77775555433
No 46
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=67.51 E-value=88 Score=29.86 Aligned_cols=29 Identities=3% Similarity=-0.120 Sum_probs=22.3
Q ss_pred CeeEEEEccCCCC-CchhHHHHHHHHHHHH
Q 012056 91 EVHACIVTCGGLC-PGLNTVIREIVCGLYH 119 (472)
Q Consensus 91 ~~~iaIltsGG~a-pGmNa~Ir~vv~~~~~ 119 (472)
..+||+++.+-.. |=...+++++.+.+..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~ 32 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD 32 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 3589999987666 7778888888777653
No 47
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=66.03 E-value=1.3 Score=45.42 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=36.7
Q ss_pred hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCc-eeeccccccccCccCcCcccCchhHHH--HHHHHHHHHHH
Q 012056 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV-AVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAHV 248 (472)
Q Consensus 179 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i-~vvgIPkTIDNDi~gtd~S~GfdTA~~--~~~~~i~~i~~ 248 (472)
.+.|.+|++|||||+..|..... ...+ ||+||+. | ++||-|.++ .+.++++++..
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~-------G---~lGFLt~~~~~~~~~al~~il~ 170 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL-------G---TLGFLSPFDFKEHKKVFQEVIS 170 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC-------S---SCCSSCCEEGGGHHHHHHHHHT
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC-------C---CcccCCcCChHHHHHHHHHHhc
Confidence 45899999999999977664432 2345 7999962 2 678877643 34455555543
No 48
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=66.03 E-value=75 Score=29.12 Aligned_cols=122 Identities=8% Similarity=0.087 Sum_probs=64.9
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (472)
..+||++...-..|-...+++++-+.+.. ++ .++.- ..+.. ....
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~~ 52 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLIL--------------------------------GNAWNNLEKQ 52 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEE--------------------------------EcCCCChHHH
Confidence 35899999766667677777777766643 22 22210 00000 1123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC--cccCchh--HHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDT--AVEEAQRAINA 245 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~S~GfdT--A~~~~~~~i~~ 245 (472)
.+.++.|...++|++++.+.+.+-.. .+.+.+. ..+|+|.+ |++.+..+ .++++|- +...+++ .
T Consensus 53 ~~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~d~~~~~~~~~~---~ 120 (289)
T 1dbq_A 53 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGR---Y 120 (289)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCCHHH----HHHHHHT-TTSCEEEE----ECSSCCSSSCEEEEECHHHHHHHHHH---H
T ss_pred HHHHHHHHhCCCCEEEEEeccCCHHH----HHHHHhc-cCCCEEEE----ccCCCccCcCCEEEeCcHHHHHHHHH---H
Confidence 45677888899999999998765322 2223221 23556654 44444332 2566653 3333333 3
Q ss_pred HHHhhhcCcceEEEEE
Q 012056 246 AHVEAESIENGIGVVK 261 (472)
Q Consensus 246 i~~~A~s~~~rv~iVE 261 (472)
+.. ..+ ++|.++-
T Consensus 121 L~~--~G~-~~i~~i~ 133 (289)
T 1dbq_A 121 LIE--RGH-REIGVIP 133 (289)
T ss_dssp HHH--TTC-CSEEEEC
T ss_pred HHH--CCC-CeEEEEe
Confidence 332 244 5677763
No 49
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=65.21 E-value=81 Score=28.62 Aligned_cols=123 Identities=13% Similarity=0.163 Sum_probs=65.3
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (472)
.+||++...-..|-...+++++-+.+.. ++ .++. +..+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHHH
Confidence 4899998766666667777777766642 22 1211 1011111 1234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchhHHHHHHHHHHHHHHh
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINAAHVE 249 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdTA~~~~~~~i~~i~~~ 249 (472)
+.++.|...++|++++.+.+.+-. +.+.+.+.+ +|+|.+ |.+.+.. -.++++|-. .....+.+.+..
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 117 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASN--TPVLEI----AELSSKASYLNIGVDHF-EVGKACTRHLIE- 117 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHT--CCEEEE----SSSCSSSSSEEECBCHH-HHHHHHHHHHHT-
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE----eeccCCCCCCEEEEChH-HHHHHHHHHHHH-
Confidence 567788889999999998775532 223333445 456654 3333221 235666632 122233333332
Q ss_pred hhcCcceEEEEEe
Q 012056 250 AESIENGIGVVKL 262 (472)
Q Consensus 250 A~s~~~rv~iVEv 262 (472)
..+ ++|.++--
T Consensus 118 -~G~-~~i~~i~~ 128 (275)
T 3d8u_A 118 -QGF-KNVGFIGA 128 (275)
T ss_dssp -TTC-CCEEEEEC
T ss_pred -CCC-CeEEEEcC
Confidence 244 56777753
No 50
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=64.34 E-value=87 Score=28.69 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=59.1
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCCh
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (472)
+..+||++...-.-|=...+++++.+.+.. ++ .++.-+. +.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NK-YEALVAT-------------------------------SQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cC-CEEEEEC-------------------------------CCCCHHHH
Confidence 346899999877777778888888777643 33 2332110 10011123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCch
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFD 233 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~Gfd 233 (472)
.+.++.|...++|++|+.+.+.... ..+.+.+.+.+ +|+|.+ |++++.. ..++++|
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D 111 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYI--GSAIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSN 111 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTT--HHHHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHcC--CCEEEe----cCCCCCCcceeEEecC
Confidence 4677888889999999998876542 12223344445 456654 4444442 2355555
No 51
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=64.20 E-value=6.9 Score=39.89 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFG 231 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~G 231 (472)
..+++++.+++.+.|.+|-|||--+++.|..++-. ..+|+|.||-| ++||...+
T Consensus 94 ~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~-----~~~p~i~IPTT-----agtgSevt 147 (387)
T 3uhj_A 94 EIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID-----TGARIVIAPTI-----ASTDAPCS 147 (387)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----TTCEEEECCSS-----CCCSTTTS
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCc-----ccCCcccC
Confidence 46788899999999999999998888888877632 25789999999 66664433
No 52
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=63.91 E-value=84 Score=28.37 Aligned_cols=172 Identities=16% Similarity=0.111 Sum_probs=85.0
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
.|||++...-.-|-...+++++-+.+.. ++ .++.-+ ..+ +........+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------~~~----------------~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AG-VTLLHR-------------STK----------------DDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HT-CEEEEC-------------CCS----------------STTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE-------------CCC----------------CCCCHHHHHH
Confidence 3899999888888888888888877753 22 222200 000 0000112345
Q ss_pred HHHHHHHhC-CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC--cccCchhHHHHHHHHHHHHHH
Q 012056 172 IVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 172 i~~~l~~~~-Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~S~GfdTA~~~~~~~i~~i~~ 248 (472)
.++.|...+ +|++++.+-+.... ....+.+.+.+ +|+|.+ |++.+..+ .++++|-. .....+.+.+..
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~--~~~~~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~~l~~ 120 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDL--TPSVAQYRARN--IPVLVV----DSDLAGDAHQGLVATDNY-AAGQLAARALLA 120 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCSSSCSSEEEECCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHH--HHHHHHHHHCC--CcEEEE----ecCCCCCCcceEEccCHH-HHHHHHHHHHHH
Confidence 678888889 99999998653321 11223344445 456654 44444332 24555432 112222333332
Q ss_pred hhh--cCcceEEEEEec-C------CCcchHHHHHhhccC-CcceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012056 249 EAE--SIENGIGVVKLM-G------RYCGFIAMYATLGSR-DVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310 (472)
Q Consensus 249 ~A~--s~~~rv~iVEvM-G------r~~G~LA~~aaLA~~-~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 310 (472)
... . ++++.++--. + |..||... +... +..+..+....++.+ .-.+.+.+-++++
T Consensus 121 ~~~~~G-~~~i~~i~~~~~~~~~~~R~~gf~~~---l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 185 (276)
T 3ksm_A 121 TLDLSK-ERNIALLRLRAGNASTDQREQGFLDV---LRKHDKIRIIAAPYAGDDRG---AARSEMLRLLKET 185 (276)
T ss_dssp HSCTTS-CEEEEECBCCTTCHHHHHHHHHHHHH---HTTCTTEEEEECCBCCSSHH---HHHHHHHHHHHHC
T ss_pred hcCcCC-CceEEEEEcCCCchhHHHHHHHHHHH---HHhCCCcEEEEEecCCCcHH---HHHHHHHHHHHhC
Confidence 221 4 3567766321 1 23344443 3332 344444444445444 3445555555544
No 53
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=63.65 E-value=80 Score=29.24 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=65.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (472)
..+||++...-..|-...++.++.+.+.. ++ .++.-+ .+... ...
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 61 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATM-YK-YNIILS--------------------------------NSDQNMEKE 61 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899999765566667777777776643 22 222200 01111 123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchh--HHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAINAA 246 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdT--A~~~~~~~i~~i 246 (472)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+ |.+.+.. -.++++|- +...+++. +
T Consensus 62 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~---L 128 (289)
T 2fep_A 62 LHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSP--VPIVLA----ASVEEQEETPSVAIDYEQAIYDAVKL---L 128 (289)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSS--SCEEEE----SCCCTTCCSCEEECCHHHHHHHHHHH---H
T ss_pred HHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHH---H
Confidence 4567788889999999998765432 223333444 456654 3333221 13455552 33333333 3
Q ss_pred HHhhhcCcceEEEEEe
Q 012056 247 HVEAESIENGIGVVKL 262 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEv 262 (472)
.. ..+ ++|.++--
T Consensus 129 ~~--~G~-~~I~~i~~ 141 (289)
T 2fep_A 129 VD--KGH-TDIAFVSG 141 (289)
T ss_dssp HH--TTC-SSEEEEES
T ss_pred HH--CCC-CeEEEEeC
Confidence 22 244 56777753
No 54
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=61.98 E-value=78 Score=29.50 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=42.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (472)
+.+||++...-..|-...++.++-+.+.. ++ .++. +..+.. ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RG-ITLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHH
Confidence 36899999776666667777777666643 22 2221 000111 1123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCc
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs 192 (472)
.+.++.|...++|++|+.+.+.+
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~ 70 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVAT 70 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSS
T ss_pred HHHHHHHHHcCCCEEEEeCCChh
Confidence 35677788899999999987654
No 55
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=60.63 E-value=81 Score=28.87 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=70.9
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
.+||++...-.-|-...+++++-+.+.. ++ .++.-+. +........+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 62 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QG-YSMLLTS-------------------------------TNNNPDNERR 62 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCChHHHHH
Confidence 6899999888888888899998877753 33 2332110 0000112346
Q ss_pred HHHHHHHhCCcEEEEEcCCCcHH-HHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHHHHh
Q 012056 172 IVDSIQDRGINQVYIIGGDGTQK-GAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAAHVE 249 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdgs~~-~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i~~~ 249 (472)
.++.|...++|++++.+.+.+.. ....+.+.+.+.+ +|+|. +|++.+..+ .++++|-. +....+.+.+..
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 134 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAM----INASYAELAAPSFTLDDV-KGGMMAAEHLLS- 134 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEE----ESSCCTTCSSCEEEECHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEE----EecCcCCCCCCEEEeCcH-HHHHHHHHHHHH-
Confidence 77888899999999999875421 1122334444445 45663 455544322 24555432 122233333332
Q ss_pred hhcCcceEEEEEe
Q 012056 250 AESIENGIGVVKL 262 (472)
Q Consensus 250 A~s~~~rv~iVEv 262 (472)
..+ ++|.++--
T Consensus 135 -~G~-~~i~~i~~ 145 (298)
T 3tb6_A 135 -LGH-THMMGIFK 145 (298)
T ss_dssp -TTC-CSEEEEEE
T ss_pred -CCC-CcEEEEcC
Confidence 244 56777753
No 56
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=59.91 E-value=4.7 Score=39.35 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~ 247 (472)
+..++++.+.+ +.|.++++|||||+..+. +.+.....++++..||.==-||+.- ++|...-.. ++++.+.
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~ar---~lg~~~~~~---~a~~~i~ 121 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFSR---TLGVPQNIA---EAAKLIT 121 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHHH---HTTCCSSHH---HHHHHHT
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHHH---HcCCCccHH---HHHHHHH
Confidence 44555555544 889999999999987543 2222223567899999877777752 344332222 2233332
Q ss_pred HhhhcCcceEEEEEecCCC
Q 012056 248 VEAESIENGIGVVKLMGRY 266 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvMGr~ 266 (472)
....+.+=+.++-+|+
T Consensus 122 ---~g~~~~iDlg~v~~~~ 137 (304)
T 3s40_A 122 ---KEHVKPVDVAKANGQH 137 (304)
T ss_dssp ---TCCEEEEEEEEETTEE
T ss_pred ---hCCeEEEEEEEECCEE
Confidence 1233456666665654
No 57
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=59.88 E-value=97 Score=28.24 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=69.9
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (472)
.+||++...-..|-...+++++-+.+.. ++ .+++-. ++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LG-YNLVVL--------------------------------DSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEEEE--------------------------------ECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cC-cEEEEe--------------------------------CCCCCHHHHH
Confidence 4788888766666667777777776643 22 232210 11111 1123
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC--cccCchhHHHHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~S~GfdTA~~~~~~~i~~i~~ 248 (472)
+.++.|...++|++++.+.+.... ....+.+.+.+ +|+|. +|++.+..+ .+++.|-. .....+.+.+..
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~----i~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 118 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQAN--IPVIT----LDRQATKGEVVSHIASDNV-LGGKIAGDYIAK 118 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTT--CCEEE----ESSCCSSSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CcEEE----ecCCCCCCceeEEEecChH-HHHHHHHHHHHH
Confidence 456777788999999987654321 11223344445 45664 455554422 25666532 122223333332
Q ss_pred hhhcCcceEEEEEec-------CCCcchHHHHH
Q 012056 249 EAESIENGIGVVKLM-------GRYCGFIAMYA 274 (472)
Q Consensus 249 ~A~s~~~rv~iVEvM-------Gr~~G~LA~~a 274 (472)
.... +++|.++--. -|..||..+..
T Consensus 119 ~g~g-~~~I~~i~g~~~~~~~~~R~~Gf~~al~ 150 (271)
T 2dri_A 119 KAGE-GAKVIELQGIAGTSAARERGEGFQQAVA 150 (271)
T ss_dssp HHCT-TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HcCC-CCeEEEEECCCCCccHhHHHHHHHHHHh
Confidence 2222 3568777522 24456665443
No 58
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=59.29 E-value=1e+02 Score=29.74 Aligned_cols=164 Identities=19% Similarity=0.132 Sum_probs=89.8
Q ss_pred CCeeEEEEc-cCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CC
Q 012056 90 DEVHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (472)
Q Consensus 90 ~~~~iaIlt-sGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~ 167 (472)
+.+||+|+| |..+-|- .....++ ..++-++-=+.|=.-.+-++++.+.+-.....++.+--||.- +.
T Consensus 2 ~~Mki~IvtDSt~dl~~----------e~~~~~~-I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqps~~ 70 (285)
T 3lup_A 2 NAMKLALITDTSAYLPE----------AIENHED-VYVLDIPIIIDGKTYIEGQNLTLDQYYDKLAASKELPKTSQPSLA 70 (285)
T ss_dssp -CCCEEEEEETTBCCCT----------TTTTCTT-EEEECCCEESSSSCCCBTTTBCHHHHHHHHHHCSSCCEECCCCHH
T ss_pred CCCCEEEEEECCCCCCH----------HHHHHCC-eEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCCCHH
Confidence 346899999 6666651 1112233 244333222222211122578888888877777766667764 34
Q ss_pred ChHHHHHHHHHhCCcEEEEEc----CCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAI 243 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIG----Gdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i 243 (472)
++.++.+.|.+.+-|.+++|. =.||+..|...+++.. +.+|.|| |.- -.|.|..=.+..+++.+
T Consensus 71 ~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~--~~~I~Vi------DS~----~~s~g~g~~v~~A~~l~ 138 (285)
T 3lup_A 71 ELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHP--NLTIAFP------DTK----ITSAPQGNLVRNALMCS 138 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCT--TSEEECC------CCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhCC--CCCEEEE------cCC----chHHHHHHHHHHHHHHH
Confidence 688888888888899888875 4677877776554321 2233222 111 12555555555554433
Q ss_pred ----------HHHHHhhhcCcceEEEEEec------CCCcchHHHHHhhc
Q 012056 244 ----------NAAHVEAESIENGIGVVKLM------GRYCGFIAMYATLG 277 (472)
Q Consensus 244 ----------~~i~~~A~s~~~rv~iVEvM------Gr~~G~LA~~aaLA 277 (472)
+.+..-... -+-+|+|+.. ||=+.--|+.+.+-
T Consensus 139 ~~G~s~eeI~~~l~~~~~~-~~~~f~v~~L~~L~kGGRis~~~a~ig~lL 187 (285)
T 3lup_A 139 REGMDFDVIVNKIQSQIEK-IEGFIVVNDLNHLVKGGRLSNGSAIIGNLL 187 (285)
T ss_dssp TTTCCHHHHHHHHHHHHTT-CEEEEECSCTHHHHHHTCBTTHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHhh-cEEEEEECChHHHhhCCCccHHHHHHHHhh
Confidence 223222222 2458888876 56555445444443
No 59
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=56.72 E-value=61 Score=31.20 Aligned_cols=76 Identities=13% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC-c-CcccCchh--HHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV-I-DKSFGFDT--AVEEAQRAINA 245 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g-t-d~S~GfdT--A~~~~~~~i~~ 245 (472)
.+.++.|...++|++|+.+.+.+-. ..+.+.+.+ +|+|.+ |.+.+. . -.++++|- +...+++.
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~~V~~D~~~~~~~a~~~--- 178 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECAN----QLEDLQKQG--MPVVLV----DRELPGDSTIPTATSNPQPGIAAAVEL--- 178 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGHH----HHHHHHHC---CCEEEE----SSCCSCC-CCCEEEEECHHHHHHHHHH---
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEE----cccCCCCCCCCEEEeChHHHHHHHHHH---
Confidence 4567788889999999998765421 223344444 456654 333332 1 12455543 33333333
Q ss_pred HHHhhhcCcceEEEEE
Q 012056 246 AHVEAESIENGIGVVK 261 (472)
Q Consensus 246 i~~~A~s~~~rv~iVE 261 (472)
+.. ..+ ++|.++-
T Consensus 179 L~~--~G~-~~I~~i~ 191 (348)
T 3bil_A 179 LAH--NNA-LPIGYLS 191 (348)
T ss_dssp HHH--TTC-CSEEEEC
T ss_pred HHH--CCC-CeEEEEe
Confidence 322 254 5687774
No 60
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=55.79 E-value=49 Score=31.49 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=57.8
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------------CCeeccChhHHhhhhh
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------------KNTINLTPKVVNDIHK 154 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~---------------~~~~~L~~~~v~~~~~ 154 (472)
...+-+++.++|+-+- .++.+. ... .-++++-.|..=|++ |++--++.+..+.+..
T Consensus 19 ~~~~~~lIv~ng~~~~---~~~~~~----~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~ 89 (247)
T 3s4y_A 19 GNLKYCLVILNQPLDN---YFRHLW----NKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYAT 89 (247)
T ss_dssp -CCCEEEEECSSCCCT---THHHHH----HHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHH
T ss_pred CCCCEEEEEECCcchH---HHHHHH----hhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHh
Confidence 4456777777888772 343333 222 247888888766554 2333455555555655
Q ss_pred cCCcccccccC-CCChHHHHHHHHHh------CCcEEEEEcCCCc
Q 012056 155 RGGTILGTSRG-GHDTSKIVDSIQDR------GINQVYIIGGDGT 192 (472)
Q Consensus 155 ~GGs~LGssR~-~~~~~~i~~~l~~~------~Id~LivIGGdgs 192 (472)
.|-.++-..-- .-|++++++.+.+. +.+-++++|+.|.
T Consensus 90 ~~~~i~~~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 90 KGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp TTCEEEECCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred cCCEEEECCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 55445432211 13688888877654 7899999999997
No 61
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=54.36 E-value=51 Score=30.67 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=45.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccc--cCCCC
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS--RGGHD 168 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss--R~~~~ 168 (472)
+.+||++...-..|-...+++++.+.+.. ++ .++.- ..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LK-VDLQI-------------------------------LAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------ECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hC-cEEEE-------------------------------ECCCCcCCHHH
Confidence 46899999877778888888888877643 23 22220 0000 01122
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
..+.++.|...++|++++.+-+..
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSS
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHH
Confidence 346778888899999999887765
No 62
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=53.88 E-value=1.4e+02 Score=27.82 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=59.9
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
+.+|||+...-.-|=...+++++-+.+.. ++ .++.-+ .+........
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 49 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AG-YKTDLQ-------------------------------YADDDIPNQL 49 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------eCCCCHHHHH
Confidence 45899999877778888888888777743 32 232210 0100111234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC---cCcccCch
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV---IDKSFGFD 233 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g---td~S~Gfd 233 (472)
+.++.|...++|++++.+-+.... ....+.+.+.+ +|||. +|++++. .+.++++|
T Consensus 50 ~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~----~~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 50 SQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIA----YDRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEE----ESSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEE----ECCCCCCCCceeEEEEeC
Confidence 667788889999999998775321 12223344444 55764 4555543 23466655
No 63
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=53.85 E-value=12 Score=37.90 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.+++.+.|.+|-|||--+++.|..++-. + .+|+|.||-|-
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa 122 (364)
T 3iv7_A 76 VAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc
Confidence 46788999999999999999998889888877653 2 46799999997
No 64
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=53.59 E-value=1.4e+02 Score=27.52 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=65.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (472)
..+||++...-..|=...++.++-+.+.. ++ .++.- ..+.. ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRA-VH-RHVVV--------------------------------ATGCGESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------ECCCSSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCchhhh
Confidence 45899998765566666777777766643 22 22220 01111 1123
Q ss_pred HH---HHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchhHHHHHHHHHHH
Q 012056 170 SK---IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINA 245 (472)
Q Consensus 170 ~~---i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdTA~~~~~~~i~~ 245 (472)
.+ .++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+ |.+.+.. -.++++|-. .....+.+.
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~ 122 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMH--PKMVFL----NRAFDALPDASFCPDHR-RGGELAAAT 122 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHC--SSEEEE----SSCCTTSGGGEECCCHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcC--CCEEEE----ccccCCCCCCEEEeCcH-HHHHHHHHH
Confidence 34 77888899999999998876522 223333345 456654 3333321 135665532 112223333
Q ss_pred HHHhhhcCcceEEEEEe
Q 012056 246 AHVEAESIENGIGVVKL 262 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEv 262 (472)
+.. ..+ ++|.++--
T Consensus 123 L~~--~G~-~~I~~i~~ 136 (290)
T 2rgy_A 123 LIE--HGH-RKLAVISG 136 (290)
T ss_dssp HHH--TTC-CSEEEEES
T ss_pred HHH--CCC-ceEEEEeC
Confidence 332 244 56877753
No 65
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=52.63 E-value=9.5 Score=38.86 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcC----------------CCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG----------------LKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~----------------~~i~vvgIPkTID 220 (472)
..+++++.+++.+.|.+|-|||--.++.|..++-.....+ -.+++|.||-|--
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTag 162 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA 162 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCc
Confidence 4678889999999999999999888988887765322101 3478999999843
No 66
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=52.05 E-value=4.6 Score=40.33 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.++++++ |.++-+||--.++.|..++-. +...+++|.||-|.
T Consensus 70 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 121 (343)
T 3clh_A 70 SLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSI---YFRGIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEeCCch
Confidence 46789999999999 999999998888877766532 22247799999996
No 67
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=51.19 E-value=36 Score=31.60 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=49.8
Q ss_pred cEEEEEccccccccc---------CCeeccChhHHhhhhhcCCcccccccC--CCChHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 124 SKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 124 ~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGssR~--~~~~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
.-++|+-.|..=|++ |++=-++.+....+...| .++-.... .-|.+++++.+.+++.+-++++|+.|.
T Consensus 23 ~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~Gg 101 (212)
T 3l8m_A 23 EHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATGG 101 (212)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 478889988887754 445456666666666666 55543332 237899999999999999999999997
No 68
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=50.89 E-value=13 Score=37.51 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.+++.+.|.+|-|||--+++.|..++-. + .+++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788899999999999999998888888877653 2 46799999984
No 69
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=50.57 E-value=15 Score=37.08 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceeeccccccccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDND 222 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDND 222 (472)
..+++++.+++.+.|.+|-|||--+++.|..++-..... .-.+|+|.||-|--.|
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 76 AVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 467889999999999999999988888888776543210 1147899999996543
No 70
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.20 E-value=1.7e+02 Score=27.67 Aligned_cols=122 Identities=9% Similarity=0.123 Sum_probs=64.9
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (472)
..+||++...-..|-...+++++-+.+.. ++ .+++ +..+... +..
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 45899998665566666777777766643 22 2322 0001111 123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC--cccCchh--HHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDT--AVEEAQRAINA 245 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~S~GfdT--A~~~~~~~i~~ 245 (472)
.+.++.|...++|++++.+.+.+-.. .+.+.+. ..+|+|.+ |++.+..+ .++++|- +...+++.
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~--- 171 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRY--- 171 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHTT-TTSCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhh-CCCCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHH---
Confidence 35677888899999999987754321 2222221 23556644 44444333 2566653 33333333
Q ss_pred HHHhhhcCcceEEEEE
Q 012056 246 AHVEAESIENGIGVVK 261 (472)
Q Consensus 246 i~~~A~s~~~rv~iVE 261 (472)
+.. ..| ++|.++-
T Consensus 172 L~~--~G~-~~I~~i~ 184 (340)
T 1qpz_A 172 LIE--RGH-REIGVIP 184 (340)
T ss_dssp HHH--HTC-CCEEEEC
T ss_pred HHH--CCC-CEEEEEe
Confidence 322 254 5687773
No 71
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=50.14 E-value=16 Score=36.61 Aligned_cols=47 Identities=26% Similarity=0.257 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.+++.+.|.+|-|||--+++.|..++-. + .+++|.||-|-
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa 121 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788899999999999999998888888877653 2 46799999996
No 72
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=49.71 E-value=1.8e+02 Score=27.72 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGD 190 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGd 190 (472)
+.++.++.|.+.++|++|++|..
T Consensus 50 ~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 50 EYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp GHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECChh
Confidence 34577888889999999998743
No 73
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=49.46 E-value=4.5 Score=41.53 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~ 236 (472)
..+++++.+.++++ |.+|-+||--.++.|..++.. +...+++|.||-|. +..+|.+.|--|++
T Consensus 108 ~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl---la~vDssvggkt~I 173 (390)
T 3okf_A 108 TFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL---LSQVDSSVGGKTAV 173 (390)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH---HHHHHTSSSCEEEE
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC---ccccccCcCCeEEE
Confidence 46788999999999 699999998888877766432 22347799999997 34455555554443
No 74
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=48.44 E-value=56 Score=31.65 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eccChhHHhhhhhcCCcccccccC---CCChHHHHHHHHHhC
Q 012056 105 GLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDSIQDRG 180 (472)
Q Consensus 105 GmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR~---~~~~~~i~~~l~~~~ 180 (472)
--+...+.+++.+...++..+|.-+..- ..+ ........+.+...|+.+...... ..++...+..+++.+
T Consensus 125 ~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~ 198 (392)
T 3lkb_A 125 SYSEQVVALLEYIAREKKGAKVALVVHP------SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAG 198 (392)
T ss_dssp CHHHHHHHHHHHHHHHCTTCEEEEEECS------SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEEeC------CchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcC
Confidence 3445566667766543455565544321 111 111111223345567776654332 357888899999999
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 181 INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 181 Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
.|++|+.+-+. .+..+.+.+++.|+++++++.
T Consensus 199 ~dav~~~~~~~---~a~~~~~~~~~~g~~~~~~~~ 230 (392)
T 3lkb_A 199 VEYVVHQNVAG---PVANILKDAKRLGLKMRHLGA 230 (392)
T ss_dssp CCEEEEESCHH---HHHHHHHHHHHTTCCCEEEEC
T ss_pred CCEEEEecCcc---hHHHHHHHHHHcCCCceEEEe
Confidence 99998876332 345566677778998877754
No 75
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=47.56 E-value=17 Score=36.57 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc---------------CCCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---------------GLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~---------------~~~i~vvgIPkTID 220 (472)
..+++++.++++++|.+|-|||--.++.|..++-..... .-.+++|.||-|--
T Consensus 76 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 76 VVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 467889999999999999999988888888776544211 11468999999963
No 76
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=45.71 E-value=85 Score=28.93 Aligned_cols=123 Identities=12% Similarity=0.052 Sum_probs=60.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..+||++...-..|=...++.++-+.+.. ++ .++.-.. + +........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~--------------~----------------~~~~~~~~~ 55 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVY--------------S----------------GSADPEEQK 55 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEe--------------C----------------CCCCHHHHH
Confidence 45899999877777778888888777642 22 2322110 0 000011123
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchh--HHHHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT--AVEEAQRAINAAHV 248 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdT--A~~~~~~~i~~i~~ 248 (472)
+.++.|...++|++++.+.+.+- ...+.+.+. .+|+|.+-...+++ -.++++|- +...++ +.+..
T Consensus 56 ~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~--~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~---~~L~~ 122 (290)
T 3clk_A 56 HALLTAIERPVMGILLLSIALTD----DNLQLLQSS--DVPYCFLSMGFDDD----RPFISSDDEDIGYQAT---NLLIN 122 (290)
T ss_dssp CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CC----SCEEECCHHHHHHHHH---HHHHT
T ss_pred HHHHHHHhcCCCEEEEecccCCH----HHHHHHHhC--CCCEEEEcCCCCCC----CCEEEeChHHHHHHHH---HHHHH
Confidence 45667778899999999876542 122333333 45677553333322 22455553 333333 33332
Q ss_pred hhhcCcceEEEEE
Q 012056 249 EAESIENGIGVVK 261 (472)
Q Consensus 249 ~A~s~~~rv~iVE 261 (472)
..+ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (290)
T 3clk_A 123 --EGH-RQIGIAG 132 (290)
T ss_dssp --TTC-CSEEEES
T ss_pred --cCC-CEEEEEe
Confidence 244 5677763
No 77
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=45.41 E-value=6.3 Score=39.75 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~ 236 (472)
..+++.+.+.++++ |.+|-+||--.++.|..++.. -.+ .+++|.||-|. +++||.++|--|++
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~-~~r--gip~i~IPTTl---la~tdS~v~~kt~I 144 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGM-MFR--GIALIHVPTTF---LAASDSVLSIKQAV 144 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHH-BTT--CCEEEEEECSH---HHHHTTTSSCEEEE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHH-hcC--CCCEEEECCch---HhhcCCCcCCeEEE
Confidence 35688888999995 999999998777777665532 123 47799999997 56677666655554
No 78
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=45.39 E-value=58 Score=31.14 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=42.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..+||++...-.-|-...++.++-+.+.. ++ .++.-.. + .......
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~-~~~~~~~ 109 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKA-AG-YQMLVAE-------------------------------A-NSVQAQD 109 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEEEEE-------------------------------C-CSHHHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CC-CEEEEEC-------------------------------C-CChHHHH
Confidence 45899999876677777788888777643 23 2332110 0 0011234
Q ss_pred HHHHHHHHhCCcEEEEEcC
Q 012056 171 KIVDSIQDRGINQVYIIGG 189 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGG 189 (472)
+.++.|...++|++++.+-
T Consensus 110 ~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 110 VVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp HHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHhCCCCEEEEcch
Confidence 6778888999999999886
No 79
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=43.13 E-value=23 Score=35.65 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH------c-------CCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------R-------GLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~------~-------~~~i~vvgIPkTI 219 (472)
..+++++.+++.++|.+|-|||--+++.|..++-.... + .-.+++|.||-|-
T Consensus 80 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 80 NVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 46788999999999999999998889888877653211 0 0247899999986
No 80
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=42.46 E-value=55 Score=30.14 Aligned_cols=125 Identities=6% Similarity=-0.059 Sum_probs=63.4
Q ss_pred CCeeEEEEcc-CCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCC
Q 012056 90 DEVHACIVTC-GGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (472)
Q Consensus 90 ~~~~iaIlts-GG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~ 168 (472)
+..+|||+.. .-.-|-...++.++-+.+.. ++. ++.-+. +......
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~ 56 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK-QNY-NYNVVI-------------------------------CPYKTDC 56 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH-TTT-CSEEEE-------------------------------EEECTTC
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH-cCC-eEEEEe-------------------------------cCCCchh
Confidence 3458999986 45667778888888777643 222 221100 0000111
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~ 248 (472)
..++++.+...++|++++.+-+.+. ..+.+ .....+|+|.+ |++.+.. .++++|-. .....+.+.+..
T Consensus 57 ~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~---~~~~~iPvV~~----~~~~~~~-~~V~~D~~-~~~~~a~~~L~~ 124 (289)
T 3g85_A 57 LHLEKGISKENSFDAAIIANISNYD---LEYLN---KASLTLPIILF----NRLSNKY-SSVNVDNY-KMGEKASLLFAK 124 (289)
T ss_dssp GGGCGGGSTTTCCSEEEESSCCHHH---HHHHH---HCCCSSCEEEE----SCCCSSS-EEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEecCCccc---HHHHH---hccCCCCEEEE----CCCCCCC-CEEEeCHH-HHHHHHHHHHHH
Confidence 2234455667899999998876443 22222 12334666644 4444433 25555532 122233333332
Q ss_pred hhhcCcceEEEEEe
Q 012056 249 EAESIENGIGVVKL 262 (472)
Q Consensus 249 ~A~s~~~rv~iVEv 262 (472)
..+ ++|.++--
T Consensus 125 --~G~-~~i~~i~~ 135 (289)
T 3g85_A 125 --KRY-KSAAAILT 135 (289)
T ss_dssp --TTC-CBCEEEEC
T ss_pred --cCC-CEEEEEeC
Confidence 244 56777653
No 81
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=41.64 E-value=14 Score=37.17 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceeeccccccccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTIDND 222 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTIDND 222 (472)
..+++++.+++.+.|.+|-|||--.++.|..++-.... ..-.+++|.||-|-..+
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 46788888999999999999998889888877654221 00356799999986544
No 82
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=41.40 E-value=21 Score=36.24 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHhC---CcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceeeccccccc
Q 012056 168 DTSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~---Id~LivIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTID 220 (472)
..+++++.+++.+ .|.+|-|||--+++.|..++-..... .-.+++|.||-|--
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 4678899999998 99999999988899888776543100 11478999998743
No 83
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=39.63 E-value=9.3 Score=38.21 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.++++++ |.++-+||--.++.|..++.. +...+++|.||-|.
T Consensus 69 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 120 (348)
T 1ujn_A 69 VYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAAT---YLRGVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHH---hccCCCEEEecCcH
Confidence 46788899999998 899999998888877766532 12247799999874
No 84
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=39.19 E-value=82 Score=28.93 Aligned_cols=68 Identities=7% Similarity=0.150 Sum_probs=41.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (472)
+..+||++... ..|-...++.++-+.+.. ++ .++. +..+... ..
T Consensus 7 ~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~ 51 (288)
T 2qu7_A 7 RSNIIAFIVPD-QNPFFTEVLTEISHECQK-HH-LHVA--------------------------------VASSEENEDK 51 (288)
T ss_dssp CEEEEEEEESS-CCHHHHHHHHHHHHHHGG-GT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEECC-CCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHHH
Confidence 34589999977 667677777777766632 22 1221 0011111 12
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
..+.++.|...++|++++.+.+.+
T Consensus 52 ~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 52 QQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp HHHHHHHHHHTTEEEEEECCSSSC
T ss_pred HHHHHHHHHHcCccEEEEecCCCC
Confidence 345677788899999999987754
No 85
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=39.12 E-value=80 Score=28.75 Aligned_cols=121 Identities=8% Similarity=-0.015 Sum_probs=59.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..+||++...-.-|=...++.++.+.+.. ++ .++.-+ -+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HG-YQVLIG-------------------------------NSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CCEEEE-------------------------------ECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHH
Confidence 45899998776667777777887776643 22 222210 0101112234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHH-HHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHHh
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYE-EIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~-~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~ 249 (472)
+.++.|...++|++|+.+.+ - ...+ .+.+.+ +|+|. +|++.+..+ ++++|-.- ....+.+.+..
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~--~----~~~~~~l~~~~--iPvV~----~~~~~~~~~-~V~~D~~~-~g~~a~~~L~~- 119 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN--E----NIIENTLTDHH--IPFVF----IDRINNEHN-GISTNHFK-GGQLQAEVVRK- 119 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG--H----HHHHHHHHHC---CCEEE----GGGCC----------HHH-HHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEecCC--h----HHHHHHHHcCC--CCEEE----EeccCCCCC-eEEechHH-HHHHHHHHHHH-
Confidence 67888889999999998832 1 1223 444445 44663 456665545 77776421 22233333332
Q ss_pred hhcCcceEEEEE
Q 012056 250 AESIENGIGVVK 261 (472)
Q Consensus 250 A~s~~~rv~iVE 261 (472)
..+ ++|.++-
T Consensus 120 -~G~-~~i~~i~ 129 (277)
T 3e61_A 120 -GKG-KNVLIVH 129 (277)
T ss_dssp -TTC-CSEEEEE
T ss_pred -CCC-CeEEEEe
Confidence 244 5677765
No 86
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.23 E-value=84 Score=28.94 Aligned_cols=69 Identities=10% Similarity=0.008 Sum_probs=44.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCccccccc--CCCC
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR--GGHD 168 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR--~~~~ 168 (472)
..+||++...-.-|-...++.++.+.+.. ++ .++.-+ .+.. ....
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 51 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEK-QG-VNLRVL-------------------------------EAGGYPNKSR 51 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSTTCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CeEEEE-------------------------------cCCCCCCHHH
Confidence 46899999877777777788888776643 33 222210 0111 0112
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
..+.++.|...++|++|+.+.+..
T Consensus 52 ~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 52 QEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCChh
Confidence 346778888899999999987655
No 87
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=37.75 E-value=22 Score=36.11 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHH---------H----cCCCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR---------Q----RGLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~---------~----~~~~i~vvgIPkTID 220 (472)
..+++++.+++.++|.+|-|||--+++.|..++-... . ..-.+++|.||-|--
T Consensus 89 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 154 (407)
T 1vlj_A 89 KVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISA 154 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 4678889999999999999999888998887765321 0 012568999998843
No 88
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=36.90 E-value=89 Score=29.58 Aligned_cols=124 Identities=14% Similarity=0.066 Sum_probs=63.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (472)
..+||++...-..|-...++.++-+.+.. ++ .++.-. .+... ...
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 105 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATM-YK-YNIILS--------------------------------NSDQNQDKE 105 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHH-HT-CEEEEE--------------------------------ECCSHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCCCChHHH
Confidence 45899999766677777888888776643 22 222200 00100 112
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchhHHHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdTA~~~~~~~i~~i~~ 248 (472)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+ |++.+.. -.++++|-.- ....+.+.+..
T Consensus 106 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~-~~~~a~~~L~~ 174 (332)
T 2hsg_A 106 LHLLNNMLGKQVDGIIFMSGNVTEE----HVEELKKSP--VPVVLA----ASIESTNQIPSVTIDYEQ-AAFDAVQSLID 174 (332)
T ss_dssp HHHHHHTSCCSSCCEEECCSSCCHH----HHHHHTTSS--SCEEEE----SCCCSCTTSCEEEECHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcEEEEecCCCCHH----HHHHHHhCC--CCEEEE----ccccCCCCCCEEEEChHH-HHHHHHHHHHH
Confidence 3456667778999999998765532 223333333 556654 4433321 1355555321 12223333332
Q ss_pred hhhcCcceEEEEEe
Q 012056 249 EAESIENGIGVVKL 262 (472)
Q Consensus 249 ~A~s~~~rv~iVEv 262 (472)
..| ++|.++--
T Consensus 175 --~G~-~~I~~i~~ 185 (332)
T 2hsg_A 175 --SGH-KNIAFVSG 185 (332)
T ss_dssp --TTC-SCEEEEES
T ss_pred --CCC-CEEEEEeC
Confidence 254 56877753
No 89
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=36.51 E-value=1.7e+02 Score=26.85 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=52.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
+.+||++...-.-|=...+++++-+.+.. ++ .+++ ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EeCC-CCHHHHH
Confidence 46899999877777777788888776643 22 2222 0101 1112234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
+.++.|...++|++++.+-+.... ..+.+.+.+.+ +|||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEe
Confidence 677888889999999999776532 22233344445 456643
No 90
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=36.30 E-value=47 Score=30.14 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=34.9
Q ss_pred ccccCCCChHHHHHHHHHhCCcEEEEEcCCCc-HHHHHHHHHHHHHcCCCceeeccccc
Q 012056 161 GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 161 GssR~~~~~~~i~~~l~~~~Id~LivIGGdgs-~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
+--|.++.+.+++++.++.+++.+|.+-|-.. +-+.. +- ....||||+|-.
T Consensus 42 SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 42 SAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTI--AA-----HTLKPVIGVPMA 93 (169)
T ss_dssp CTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECC
T ss_pred cccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----cCCCCEEEeecC
Confidence 33466677888888899999997777755444 44332 21 346889999964
No 91
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=35.97 E-value=2.1e+02 Score=27.52 Aligned_cols=136 Identities=16% Similarity=0.248 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhCCcEE--EEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC---------cccCchhHHH
Q 012056 169 TSKIVDSIQDRGINQV--YIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID---------KSFGFDTAVE 237 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~L--ivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd---------~S~GfdTA~~ 237 (472)
+++..+.|++.+=.+| |+.-||-++....++.+.+.+.|.++-=+|+|=+ | |.-| ..+-..+-+.
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfS---D-P~aDGpvIq~a~~rAL~~G~~~~ 82 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFS---D-PLADGPTIQGANLRALAAKTTPD 82 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCC---C-GGGCCSHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---C-CCCCCHHHHHHHHHHHHcCCCHH
Confidence 4566677776665555 6789999999999999999888999888999962 2 1111 1111112233
Q ss_pred HHHHHHHHHHHhhhcCcceEEEEEecCCC-----cchHHHHH-hhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCC
Q 012056 238 EAQRAINAAHVEAESIENGIGVVKLMGRY-----CGFIAMYA-TLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG 311 (472)
Q Consensus 238 ~~~~~i~~i~~~A~s~~~rv~iVEvMGr~-----~G~LA~~a-aLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~ 311 (472)
.+.+.+.+++..-...+ +. +||=. -|.-.... +..+ |+|.+++|..|++.. +.+.+..++.+
T Consensus 83 ~~~~~v~~~r~~~~~~P--iv---lm~Y~n~v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee~------~~~~~~~~~~g 150 (271)
T 3nav_A 83 ICFELIAQIRARNPETP--IG---LLMYANLVYARGIDDFYQRCQKA-GVDSVLIADVPTNES------QPFVAAAEKFG 150 (271)
T ss_dssp HHHHHHHHHHHHCTTSC--EE---EEECHHHHHHTCHHHHHHHHHHH-TCCEEEETTSCGGGC------HHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHHhHHHHHHHHHHC-CCCEEEECCCCHHHH------HHHHHHHHHcC
Confidence 44566677765422222 22 35421 13222222 2233 799999999887421 33444455555
Q ss_pred cE-EEEEeCC
Q 012056 312 HM-VIVIAEG 320 (472)
Q Consensus 312 ~~-vIvvaEG 320 (472)
-. +.+++=-
T Consensus 151 l~~I~lvap~ 160 (271)
T 3nav_A 151 IQPIFIAPPT 160 (271)
T ss_dssp CEEEEEECTT
T ss_pred CeEEEEECCC
Confidence 33 4466543
No 92
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=35.00 E-value=40 Score=30.44 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=33.9
Q ss_pred cccCCCChHHHHHHHHHhCCcEEEEEcC-CCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 162 TSRGGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 162 ssR~~~~~~~i~~~l~~~~Id~LivIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
--|.++.+.+++++.++.+++.+|.+-| .+.+-+.. +- ....||||+|-..
T Consensus 40 aHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~ 91 (163)
T 3ors_A 40 AHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMV--AS-----LTTLPVIGVPIET 91 (163)
T ss_dssp TTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECC
T ss_pred CcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCC
Confidence 3466666778888888888997777654 44454432 21 1467899999654
No 93
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=34.62 E-value=14 Score=37.10 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFG 231 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~G 231 (472)
..+++++.+++ +.|.+|-|||--.++.|..++-. + .+++|.||-| ++||...+
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTT-----a~tgSevt 135 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---L--KKPVVIVPTI-----ASTDAPCS 135 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---T--TCCEEEEESS-----CCCSCTTS
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEecCc-----cccCcccC
Confidence 45666777777 99999999998888888877732 2 4679999998 66765554
No 94
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=33.83 E-value=35 Score=33.91 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.++++++ |.+|-|||--.++.|..++-. +...+++|.||-|.
T Consensus 75 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~---~~rgip~i~IPTT~ 126 (354)
T 1xah_A 75 QYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAAT---LLRGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECST
T ss_pred HHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEECCcc
Confidence 46789999999999 999999998888877766532 22346899999986
No 95
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=33.74 E-value=1.9e+02 Score=27.71 Aligned_cols=138 Identities=19% Similarity=0.288 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhCCcEE--EEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC---------cccCchhHHH
Q 012056 169 TSKIVDSIQDRGINQV--YIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID---------KSFGFDTAVE 237 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~L--ivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd---------~S~GfdTA~~ 237 (472)
+++..+.+++.+=.+| ++.-||-++....++.+.+.+.|.++-=+|+|=+ | |.-| ..+-..+-++
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfS---D-P~aDGp~Iq~a~~~AL~~G~~~~ 80 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFS---D-PLADGPVIQGANLRSLAAGTTSS 80 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCS---C-CTTCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---C-CCCCCHHHHHHHHHHHHcCCCHH
Confidence 3455666666665555 6789999999999999999888988877888852 2 2222 1222223334
Q ss_pred HHHHHHHHHHHhhhcCcceEEEEEecCCCc-----chHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCc
Q 012056 238 EAQRAINAAHVEAESIENGIGVVKLMGRYC-----GFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGH 312 (472)
Q Consensus 238 ~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~-----G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~ 312 (472)
.+.+.+.+++......+ +. +|+=.- |.-.....++..|+|.+++|-.|+... +.+.+..++.+-
T Consensus 81 ~~~~~v~~ir~~~~~~P--iv---lm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~------~~~~~~~~~~gl 149 (267)
T 3vnd_A 81 DCFDIITKVRAQHPDMP--IG---LLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEES------APFSKAAKAHGI 149 (267)
T ss_dssp HHHHHHHHHHHHCTTCC--EE---EEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGC------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCC--EE---EEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhH------HHHHHHHHHcCC
Confidence 55677777775422333 22 465311 322222222222899999999887421 334445555553
Q ss_pred -EEEEEeCCC
Q 012056 313 -MVIVIAEGA 321 (472)
Q Consensus 313 -~vIvvaEG~ 321 (472)
.+.+++=..
T Consensus 150 ~~i~liaP~t 159 (267)
T 3vnd_A 150 APIFIAPPNA 159 (267)
T ss_dssp EEECEECTTC
T ss_pred eEEEEECCCC
Confidence 344665444
No 96
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=33.71 E-value=58 Score=31.75 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=66.3
Q ss_pred eccChhHHhhhhhcC-CcccccccC-CCChHHHHHHHHHhCCcEEEEEc----CCCcHHHHHHHHHHHH-Hc-CCCceee
Q 012056 142 INLTPKVVNDIHKRG-GTILGTSRG-GHDTSKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIR-QR-GLKVAVA 213 (472)
Q Consensus 142 ~~L~~~~v~~~~~~G-Gs~LGssR~-~~~~~~i~~~l~~~~Id~LivIG----Gdgs~~~a~~L~~~~~-~~-~~~i~vv 213 (472)
++++.+.+-.....+ +...-||-- +.++.++.+.+.+.+ +.+++|. =.||+..|...++.+. ++ +.+|.||
T Consensus 44 ~di~~~efy~~~~~~~~~~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi 122 (297)
T 3nyi_A 44 VDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI 122 (297)
T ss_dssp TTBCHHHHHHHHHHCTTCCCEEECCCHHHHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCceecCCCHHHHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 478888888777666 566767664 346778888887778 7777773 5788998888776653 33 4455444
Q ss_pred ccccccccCccCcCcccCchhHHHHHHHHHH----------HHHHhhhcCcceEEEEEec
Q 012056 214 GIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN----------AAHVEAESIENGIGVVKLM 263 (472)
Q Consensus 214 gIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~----------~i~~~A~s~~~rv~iVEvM 263 (472)
|.- -.|.|..=.+..+++.++ .+....... +-+|+|+..
T Consensus 123 ------DS~----~~s~g~g~~v~~A~~l~~~G~s~~eI~~~l~~~~~~~-~~~f~v~~L 171 (297)
T 3nyi_A 123 ------DSK----QNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMASA-RIFFTVGSL 171 (297)
T ss_dssp ------ECS----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-EEEEECSCS
T ss_pred ------eCC----chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-EEEEEECCH
Confidence 211 125555555555544332 222222222 447888876
No 97
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=33.40 E-value=52 Score=25.32 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=38.5
Q ss_pred ccccCCCChHHHHHHHHHhCCc---------EEEEEcCCCcHHHHHHHHHHHHHcCCCce
Q 012056 161 GTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGAAVIYEEIRQRGLKVA 211 (472)
Q Consensus 161 GssR~~~~~~~i~~~l~~~~Id---------~LivIGGdgs~~~a~~L~~~~~~~~~~i~ 211 (472)
|+-+...+.+++.+.|+..++. +-|.+|.+.+...|.++.+.+++.|++-.
T Consensus 15 GaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 15 GSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred EEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 4444445677888889888877 45788999898889988888887777643
No 98
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=33.31 E-value=1.1e+02 Score=29.03 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=57.8
Q ss_pred CchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eccChhHHhhhhhcCCcccccccC---CCChHHHHHHHHHh
Q 012056 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDSIQDR 179 (472)
Q Consensus 104 pGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR~---~~~~~~i~~~l~~~ 179 (472)
|--+...+.+++.+...++..+|.-+... ..+ ..+.....+.+...|+++...... ..++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIHDK------TPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEECS------SHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEeCC------ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 33344556666666544454455544321 111 111111223345567766544332 35788889999999
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
+.|++|+.+-+.. +..+.+.+++.|+++++++.
T Consensus 193 ~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~ 225 (356)
T 3ipc_A 193 GVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSG 225 (356)
T ss_dssp TCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEEC
T ss_pred CCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEe
Confidence 9999887664433 33455666777888776653
No 99
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=32.31 E-value=17 Score=37.82 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~ 236 (472)
..+++++.+++ +.|.+|-|||--.++.|..++-. + .+++|.||-| ++||...+--+.+
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~--giP~I~IPTT-----AgtgSevt~~avI 191 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---M--NLPSIICPTT-----ASSDAATSSLSVI 191 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---T--TCCEEEEESS-----CSCSCTTCSEEEE
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEEeCC-----CccCcccCCceEE
Confidence 35566666777 99999999998889888877732 3 4679999999 6666555544443
No 100
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=31.93 E-value=39 Score=30.85 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=33.6
Q ss_pred cccCCCChHHHHHHHHHhCCcEEEEEcCC-CcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 162 TSRGGHDTSKIVDSIQDRGINQVYIIGGD-GTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 162 ssR~~~~~~~i~~~l~~~~Id~LivIGGd-gs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
--|.++.+.+++++.++.+++.+|.+-|- +.+-+.. +- ....||||+|-.
T Consensus 49 aHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 49 AHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGML--AA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp TTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHH--HH-----TCSSCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----ccCCCEEEeeCC
Confidence 34666667788888888899977776544 4444432 21 346889999964
No 101
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=31.79 E-value=2.5e+02 Score=25.92 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHhCCcEEEEEcCCC---------cHHHHHHHHHHHHHcCCCceeecccc
Q 012056 166 GHDTSKIVDSIQDRGINQVYIIGGDG---------TQKGAAVIYEEIRQRGLKVAVAGIPK 217 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LivIGGdg---------s~~~a~~L~~~~~~~~~~i~vvgIPk 217 (472)
..++++.++.+++.|++++=+-.... +...+..+.+.++++|+.+..++.|.
T Consensus 29 ~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 29 GECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 35789999999999999988776543 23446677788888898876666554
No 102
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=31.36 E-value=12 Score=37.94 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (472)
..+++++.+.++++ |.++-+||--.++.|..++.. ..+| +++|.||-|.-
T Consensus 88 ~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~-~~rg--ip~i~IPTTll 140 (368)
T 3qbe_A 88 VVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAAT-WLRG--VSIVHLPTTLL 140 (368)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH-GGGC--CEEEEEECSHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHH-hccC--CcEEEECCCCc
Confidence 46788888998875 999999998888877766532 2234 67999999963
No 103
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=30.62 E-value=3.3e+02 Score=25.17 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCchh--HHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDT--AVEEAQRAINA 245 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~GfdT--A~~~~~~~i~~ 245 (472)
.+.++.|...++|++++.+.+.... ....+.+.+.+ +|||. +|++.+.. ..++++|- +...+++ .
T Consensus 47 ~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~----~~~~~~~~~~~~~V~~d~~~~g~~a~~---~ 115 (313)
T 2h3h_A 47 LQMLESFIAEGVNGIAIAPSDPTAV--IPTIKKALEMG--IPVVT----LDTDSPDSGRYVYIGTDNYQAGYTAGL---I 115 (313)
T ss_dssp HHHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEE----ESSCCTTSCCSCEEECCHHHHHHHHHH---H
T ss_pred HHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CeEEE----eCCCCCCcceeEEECcCHHHHHHHHHH---H
Confidence 3567777788999999988765421 11223333444 45664 35554431 23455553 2333333 3
Q ss_pred HHHhhhcCcceEEEEEec
Q 012056 246 AHVEAESIENGIGVVKLM 263 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvM 263 (472)
+......+ ++|.++--.
T Consensus 116 L~~~~~G~-~~I~~i~~~ 132 (313)
T 2h3h_A 116 MKELLGGK-GKVVIGTGS 132 (313)
T ss_dssp HHHHHTSC-SEEEEEESC
T ss_pred HHHHcCCC-CEEEEEECC
Confidence 32222243 568877543
No 104
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=30.46 E-value=58 Score=24.69 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=36.9
Q ss_pred ccccCCCChHHHHHHHHHhCCc---------EEEEEcCCCcHHHHHHHHHHHHHcCCC
Q 012056 161 GTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (472)
Q Consensus 161 GssR~~~~~~~i~~~l~~~~Id---------~LivIGGdgs~~~a~~L~~~~~~~~~~ 209 (472)
|+-+...+.++..+.|++.+++ +-+.+|.+.+...|..+.+.+++.|++
T Consensus 15 Gaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 15 GAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 4434445667888888888877 456788888988899888888877775
No 105
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=30.29 E-value=22 Score=35.30 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (472)
..+++ +.+++.+.|.+|-|||--.++.|..++ +. ++ +++|.||-|.-.|
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tg 125 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSND 125 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCC
Confidence 34566 667778999999999988888888776 32 23 6799999997654
No 106
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=30.06 E-value=80 Score=30.99 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=53.9
Q ss_pred EEEEEcccccccccCCeeccChhHHhhhhhcCC--ccc-ccccC--CCChHHHHHHHHHhCCcEEEEEcCCCc------H
Q 012056 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG--TIL-GTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT------Q 193 (472)
Q Consensus 125 ~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG--s~L-GssR~--~~~~~~i~~~l~~~~Id~LivIGGdgs------~ 193 (472)
..+-|.+|-.|... +-+...+..+.+.=| ++. =|||. ...++..+..++..||+-++++.||-. +
T Consensus 54 ~fvsVT~gagg~~r----~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~ 129 (304)
T 3fst_A 54 KFVSVTYGANSGER----DRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPE 129 (304)
T ss_dssp SEEEECCCTTSSCH----HHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------C
T ss_pred CEEEEeeCCCCcch----hHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCC
Confidence 55666666665432 222333444444223 121 14444 245778888899999999999999843 4
Q ss_pred HHHHHHHHHHHHc-CCCceeeccc
Q 012056 194 KGAAVIYEEIRQR-GLKVAVAGIP 216 (472)
Q Consensus 194 ~~a~~L~~~~~~~-~~~i~vvgIP 216 (472)
..|..|.+.+++. ++.|.+.+-|
T Consensus 130 ~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 130 MYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp CCHHHHHHHHHHHCCCEEEEEECT
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCC
Confidence 4477787777654 5666676666
No 107
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=29.23 E-value=3.3e+02 Score=24.75 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=63.5
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (472)
..+||++...-..|-...+++++.+.+.. ++ .++.-+ .+... ...
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~~~~ 53 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEK-NG-YRILLC--------------------------------NTESDLARS 53 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899999765566666777777766642 22 222200 00110 112
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchh--HHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAINAA 246 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdT--A~~~~~~~i~~i 246 (472)
.+.++.|...++|++++.+.+.+-. ..+.+. .+ +|+|.+ |.+.+.. -.++++|- +...+++ .+
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~-~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~---~L 119 (285)
T 3c3k_A 54 RSCLTLLSGKMVDGVITMDALSELP----ELQNII-GA--FPWVQC----AEYDPLSTVSSVSIDDVAASEYVVD---QL 119 (285)
T ss_dssp HHHTHHHHTTCCSEEEECCCGGGHH----HHHHHH-TT--SSEEEE----SSCCTTSSSCEEECCHHHHHHHHHH---HH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHh-cC--CCEEEE----ccccCCCCCCEEEEChHHHHHHHHH---HH
Confidence 3567778889999999998764421 223333 34 556654 4433321 13455553 3333333 33
Q ss_pred HHhhhcCcceEEEEEe
Q 012056 247 HVEAESIENGIGVVKL 262 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEv 262 (472)
... .+ ++|.++--
T Consensus 120 ~~~--G~-~~I~~i~~ 132 (285)
T 3c3k_A 120 VKS--GK-KRIALINH 132 (285)
T ss_dssp HHT--TC-CCEEEEEC
T ss_pred HHc--CC-CeEEEEeC
Confidence 322 44 56877753
No 108
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=28.51 E-value=2.8e+02 Score=26.21 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=57.8
Q ss_pred CchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eccChhHHhhhhhcCCcccccc--cCCCChHHHHHHHHHhC
Q 012056 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTS--RGGHDTSKIVDSIQDRG 180 (472)
Q Consensus 104 pGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGss--R~~~~~~~i~~~l~~~~ 180 (472)
|.-....+.+++.+...++..+|.-+. +-. ..+ ..+.....+.+...|+.+.... ....++...++.+++.+
T Consensus 130 ~~~~~~~~~~~~~l~~~~g~~~iaii~-~~~----~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~ 204 (366)
T 3td9_A 130 FIDPFQGAAMAVFAYKNLGAKRVVVFT-DVE----QDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFN 204 (366)
T ss_dssp CCHHHHHHHHHHHHHHTSCCCEEEEEE-ETT----CHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEEEEE-eCC----CcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcC
Confidence 333345566666664434555555442 110 111 0111112233455677665443 22357888899999999
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 181 INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 181 Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
.|++|+.+-+. .+..+.+.+++.|+++++++.
T Consensus 205 ~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~~~~ 236 (366)
T 3td9_A 205 PDAIYITGYYP---EIALISRQARQLGFTGYILAG 236 (366)
T ss_dssp CSEEEECSCHH---HHHHHHHHHHHTTCCSEEEEC
T ss_pred CCEEEEccchh---HHHHHHHHHHHcCCCceEEee
Confidence 99998865432 244456677778988777654
No 109
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=28.31 E-value=3.6e+02 Score=25.10 Aligned_cols=126 Identities=10% Similarity=0.013 Sum_probs=64.2
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (472)
.+||++...-..|=....+.++.+.+.. .+ .++. +...+... ....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~-------------------------------~~~~~~~d~~~q~ 50 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKA-LG-IDVT-------------------------------YDGPTEPSVSGQV 50 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHH-HT-CEEE-------------------------------ECCCSSCCHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHH-hC-CEEE-------------------------------EECCCCCCHHHHH
Confidence 4899998655556666777777665542 22 1221 00111111 1234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcH-HHHHHHHHHHHHcCCCceeeccccccccCccC--cCccc-CchhHHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQ-KGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV--IDKSF-GFDTAVEEAQRAINAA 246 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~-~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g--td~S~-GfdTA~~~~~~~i~~i 246 (472)
+.++.|...++|+|++.+-+.+. ..+ .+.+.+.+ ||||.+ |.+++. .+..+ ++|-. .....+.+.+
T Consensus 51 ~~i~~li~~~vdgiii~~~~~~~~~~~---~~~a~~~g--ipvV~~----d~~~~~~~~~~~v~~~D~~-~~g~~~~~~L 120 (316)
T 1tjy_A 51 QLVNNFVNQGYDAIIVSAVSPDGLCPA---LKRAMQRG--VKILTW----DSDTKPECRSYYINQGTPK-QLGSMLVEMA 120 (316)
T ss_dssp HHHHHHHHTTCSEEEECCSSSSTTHHH---HHHHHHTT--CEEEEE----SSCCCGGGCSEEEESCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHHHH---HHHHHHCc--CEEEEe----cCCCCCCCceEEEecCCHH-HHHHHHHHHH
Confidence 56778888999999998877652 222 23333344 567755 444432 23455 66632 1222222333
Q ss_pred HHhh-hcCcceEEEEE
Q 012056 247 HVEA-ESIENGIGVVK 261 (472)
Q Consensus 247 ~~~A-~s~~~rv~iVE 261 (472)
.... ..+ ++|.++.
T Consensus 121 ~~~~~~g~-~~i~~i~ 135 (316)
T 1tjy_A 121 AHQVDKEK-AKVAFFY 135 (316)
T ss_dssp HHHHCSSS-EEEEEEE
T ss_pred HHHcCCCC-CEEEEEE
Confidence 2211 133 5677775
No 110
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=27.23 E-value=1e+02 Score=28.56 Aligned_cols=135 Identities=16% Similarity=0.038 Sum_probs=72.1
Q ss_pred CeeEEEEccCCCCCchh-HHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCCh
Q 012056 91 EVHACIVTCGGLCPGLN-TVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmN-a~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (472)
..+||++...-.-|-.. .+++++.+.+.. ++ .++.-+. +.......
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 59 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILIAN-------------------------------TGGSSERE 59 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCChHHH
Confidence 35899998776667777 888888777653 33 2332110 00001123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCchhHHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~GfdTA~~~~~~~i~~i~ 247 (472)
.+.++.|...++|++|+.+-+..- ..+.+.+. .+|+|.+ |++.+.. -.++++|-. .....+.+.+.
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~ 127 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGDV--SIPTVMI----NCRPQTRELLPSIEPDDY-QGARDLTRYLL 127 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTTC--CCCEEEE----EEECSSTTSSCEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCCccH-----HHHHHHhC--CCCEEEE----CCCCCCCCCCCEEeeChH-HHHHHHHHHHH
Confidence 467788889999999999876543 11222222 4556644 4444432 134555432 11222333333
Q ss_pred HhhhcCcceEEEEEec-------CCCcchHHHH
Q 012056 248 VEAESIENGIGVVKLM-------GRYCGFIAMY 273 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvM-------Gr~~G~LA~~ 273 (472)
. ..+ ++|.++--. -|..||..+.
T Consensus 128 ~--~G~-~~I~~i~~~~~~~~~~~R~~Gf~~al 157 (301)
T 3miz_A 128 E--RGH-RRIGYIRLNPILLGAELRLDAFRRTT 157 (301)
T ss_dssp T--TTC-CSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred H--cCC-CeEEEEecCccchhHHHHHHHHHHHH
Confidence 2 354 567777532 2445666544
No 111
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=26.82 E-value=69 Score=31.56 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=59.4
Q ss_pred ccccccCCCeeEEEEc-cCCCCCchhHHHHHHHHHHHHhcCCcEEEEEccccccc--ccCCeeccChhHHhhhhhcCCcc
Q 012056 83 QKVYFVSDEVHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGF--YSKNTINLTPKVVNDIHKRGGTI 159 (472)
Q Consensus 83 ~~~~~~~~~~~iaIlt-sGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL--~~~~~~~L~~~~v~~~~~~GGs~ 159 (472)
+++|++.. ++++|+| |..+-|- ... +.++. .++-++-=+.|= +.+..++++.+++-.....+..+
T Consensus 18 ~~~~~~~~-Mki~IvtDSt~dL~~------e~~----~~~~I-~vvPL~v~~~~~~~Y~D~~~di~~~efy~~m~~~~~~ 85 (313)
T 1mgp_A 18 ENLYFQGH-MKVKILVDSTADVPF------SWM----EKYDI-DSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAGSV 85 (313)
T ss_dssp -------C-CCEEEEEEGGGCCCT------THH----HHTTE-EEECCEEECTTSCEEECCCCHHHHHHHHHHHHHCSSC
T ss_pred hhhhhcCC-CCEEEEEECCCCCCH------HHH----HhCCe-EEEEEEEEECCEEEEeCCCcCCCHHHHHHHHHhCCCC
Confidence 34555544 4899999 6666652 111 22442 443332222221 11221467777777777776655
Q ss_pred cccccC-CCChHHHHHHHHHhCCcEEEEEc----CCCcHHHHHHHHHH
Q 012056 160 LGTSRG-GHDTSKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEE 202 (472)
Q Consensus 160 LGssR~-~~~~~~i~~~l~~~~Id~LivIG----Gdgs~~~a~~L~~~ 202 (472)
--||.- +.++.++.+.+.+.+-|.+++|. =.||+..|...+++
T Consensus 86 pkTSqPs~~~~~e~f~~l~~~g~d~Ii~I~iSs~LSGTy~sA~~Aa~~ 133 (313)
T 1mgp_A 86 PKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKE 133 (313)
T ss_dssp CEEECCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHHcCCCeEEEEECCccHhHHHHHHHHHHhc
Confidence 566654 24677777777777888788874 46788887766654
No 112
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=26.27 E-value=84 Score=27.48 Aligned_cols=50 Identities=32% Similarity=0.542 Sum_probs=34.8
Q ss_pred CChHHHHHHHH-HhCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceeecccccc
Q 012056 167 HDTSKIVDSIQ-DRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTI 219 (472)
Q Consensus 167 ~~~~~i~~~l~-~~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTI 219 (472)
-|..-+++.++ ...+|.++++-||+=|.-+. +.++++ |..+-++|.|+..
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGS
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcC
Confidence 35555555543 25699999999999997643 455564 8888888887643
No 113
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=26.07 E-value=3.7e+02 Score=24.30 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=40.8
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (472)
.+||++...-..|-...++.++.+.+.. ++ .++. +-.+... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 48 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ-LG-YEAT--------------------------------IFDSQNDTAKES 48 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHHH
Confidence 4799998765666677777887776643 22 2221 0001111 1123
Q ss_pred HHHHHHHHhCCcEEEEEcCCCc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs 192 (472)
+.++.|...++|++++.+.+.+
T Consensus 49 ~~~~~l~~~~vdgiI~~~~~~~ 70 (290)
T 2fn9_A 49 AHFDAIIAAGYDAIIFNPTDAD 70 (290)
T ss_dssp HHHHHHHHTTCSEEEECCSCTT
T ss_pred HHHHHHHHcCCCEEEEecCChH
Confidence 5677778889999999987654
No 114
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=26.02 E-value=41 Score=33.06 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=52.1
Q ss_pred EEEEEcccccccccCCeeccChhHHhhhhhcCCc-cc-ccccC--CCChHHHHHHHHHhCCcEEEEEcCCCc--------
Q 012056 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-IL-GTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT-------- 192 (472)
Q Consensus 125 ~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~L-GssR~--~~~~~~i~~~l~~~~Id~LivIGGdgs-------- 192 (472)
..+-|.+|-.|-. .+-+...+..+...|=. +. =|+|. ...++..+..++..||+.++++.||-.
T Consensus 44 d~vsVT~~~~g~~----r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~ 119 (310)
T 3apt_A 44 AFVSITYGAMGST----RERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRP 119 (310)
T ss_dssp SEEEECCCSTTCS----HHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCC
T ss_pred CEEEEecCCCCCc----chhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCC
Confidence 4555666655432 22233334444423221 11 14444 235778888899999999999999932
Q ss_pred ----HHHHHHHHHHHHHc-C--CCceeeccc
Q 012056 193 ----QKGAAVIYEEIRQR-G--LKVAVAGIP 216 (472)
Q Consensus 193 ----~~~a~~L~~~~~~~-~--~~i~vvgIP 216 (472)
+..|..|.+.+++. | +.|-+.+-|
T Consensus 120 ~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 120 HPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp CTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 44577787777665 4 555565555
No 115
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=25.77 E-value=52 Score=30.01 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=35.9
Q ss_pred ccccCCCChHHHHHHHHHhCCcEEEEEcCC-CcHHHHHHHHHHHHHcCCCceeeccccccc
Q 012056 161 GTSRGGHDTSKIVDSIQDRGINQVYIIGGD-GTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (472)
Q Consensus 161 GssR~~~~~~~i~~~l~~~~Id~LivIGGd-gs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (472)
+--|.++.+.+++++.++.+++.+|++-|- +.+-+.. +- ....||||+|-...
T Consensus 43 SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 43 SAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AA-----ATPLPVIGVPVPLG 96 (174)
T ss_dssp CTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCCC
Confidence 334666778889999999999987777554 4454432 21 14678999996543
No 116
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=25.32 E-value=43 Score=30.53 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=37.1
Q ss_pred cccccCCCChHHHHHHHHHhCCcEEEEE-cCCCcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 160 LGTSRGGHDTSKIVDSIQDRGINQVYII-GGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~LivI-GGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
.+--|.++.+.++++..+..+++.+|.+ |+.+.+-+...= ....||||+|-.
T Consensus 47 ~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~-------~t~~PVIgVPv~ 99 (173)
T 4grd_A 47 VSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA-------KTTVPVLGVPVA 99 (173)
T ss_dssp CCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH-------HCCSCEEEEEEC
T ss_pred EccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee-------cCCCCEEEEEcC
Confidence 4445666677888888888999987765 666667664422 146789999976
No 117
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=25.24 E-value=2.7e+02 Score=25.90 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=38.8
Q ss_pred hhhcCCccccccc---CCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 152 IHKRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 152 ~~~~GGs~LGssR---~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
+...|+++..... ...++...++.|++.+.|++|+.+-+. . +..+.+.+++.|+++++++.
T Consensus 162 l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~-~--a~~~~~~~~~~g~~~~~~~~ 225 (346)
T 1usg_A 162 LKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYP-E--MGQMLRQARSVGLKTQFMGP 225 (346)
T ss_dssp HHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH-H--HHHHHHHHHHTTCCCEEEEC
T ss_pred HHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcch-H--HHHHHHHHHHcCCCCeEEec
Confidence 3445666544322 234677788888888999998876322 2 34455667777888776653
No 118
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=25.05 E-value=44 Score=33.74 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHhC--C---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRG--I---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~--I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++.+.+.+.+ + |.+|-+||-=.++.|..++-.. .++ +++|.||-|.
T Consensus 88 ~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 88 TKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 4678999999999 9 9999999987787777665322 344 6799999985
No 119
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=24.68 E-value=2.4e+02 Score=24.53 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=50.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhH-HhhhhhcCCcccccccC-C--
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV-VNDIHKRGGTILGTSRG-G-- 166 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~-v~~~~~~GGs~LGssR~-~-- 166 (472)
+.||.+.+.||+.--+..-+-+.. + .. .|.+|+ |.|. ..+.+. ++......-.++|.|-. .
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~--l-~~-~G~eVi-----~lG~------~~p~e~lv~aa~~~~~diV~lS~~~~~~ 82 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARA--L-RD-AGFEVV-----YTGL------RQTPEQVAMAAVQEDVDVIGVSILNGAH 82 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHH--H-HH-TTCEEE-----CCCS------BCCHHHHHHHHHHTTCSEEEEEESSSCH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHH--H-HH-CCCEEE-----ECCC------CCCHHHHHHHHHhcCCCEEEEEeechhh
Confidence 458999999999876655443332 2 12 345665 2221 134443 33344444456665432 2
Q ss_pred -CChHHHHHHHHHhCC-cEEEEEcCCCc
Q 012056 167 -HDTSKIVDSIQDRGI-NQVYIIGGDGT 192 (472)
Q Consensus 167 -~~~~~i~~~l~~~~I-d~LivIGGdgs 192 (472)
..+.++++.|++.+. +..+++||.-.
T Consensus 83 ~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 83 LHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 346788888888877 67788888643
No 120
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=24.22 E-value=32 Score=30.24 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHH--HHHHHHHcCCCceeecccccccc
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV--IYEEIRQRGLKVAVAGIPKTIDN 221 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~--L~~~~~~~~~~i~vvgIPkTIDN 221 (472)
.+++++++.|++.+++-++|+||-.-+..... |.+ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 36889999999999999999999776655443 322 3567778888754
No 121
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=23.89 E-value=1.4e+02 Score=32.01 Aligned_cols=102 Identities=19% Similarity=0.102 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc-ccccccCccCcCcccCchhHHHHHHHHHHHHHHh
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~ 249 (472)
+.++.+++.--+.-++.|.--|..+|..|.+. |.+.--||| |.+|.--=.-+-.-...-||+-.++++....
T Consensus 311 ~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a----GAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~--- 383 (556)
T 4af0_A 311 EFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA----GADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRF--- 383 (556)
T ss_dssp HHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH----TCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHhhCCcceEEeccccCHHHHHHHHHc----CCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHc---
Confidence 44444554444444555555666666666542 555555555 5554321111112234566766655543221
Q ss_pred hhcCcceEEEEEecC-CCcchHHHHHhhccCCcceEecCC
Q 012056 250 AESIENGIGVVKLMG-RYCGFIAMYATLGSRDVDCCLIPE 288 (472)
Q Consensus 250 A~s~~~rv~iVEvMG-r~~G~LA~~aaLA~~~ad~ilIPE 288 (472)
++-||===| |++|.+|.+.| . |||.|.+--
T Consensus 384 ------~vpvIADGGI~~sGDi~KAla--a-GAd~VMlGs 414 (556)
T 4af0_A 384 ------GIPCIADGGIGNIGHIAKALA--L-GASAVMMGG 414 (556)
T ss_dssp ------TCCEEEESCCCSHHHHHHHHH--T-TCSEEEEST
T ss_pred ------CCCEEecCCcCcchHHHHHhh--c-CCCEEEEch
Confidence 234443222 78899987554 4 789888753
No 122
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=23.85 E-value=1.8e+02 Score=26.96 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchh--HHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAINA 245 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdT--A~~~~~~~i~~ 245 (472)
..++++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|. +|+++... ..++++|- +...+++.+
T Consensus 72 ~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~~L-- 139 (305)
T 3huu_A 72 YHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLI----VGKSLNYENIIHIDNDNIDAAYQLTQYL-- 139 (305)
T ss_dssp HHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEE----ESCCCSSTTCCEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEE----ECCCCcccCCcEEEeCHHHHHHHHHHHH--
Confidence 34678888999999999998775532 223344445 45664 44444221 22444442 333333322
Q ss_pred HHHhhhcCcceEEEEEecC-------CCcchHHHHH
Q 012056 246 AHVEAESIENGIGVVKLMG-------RYCGFIAMYA 274 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMG-------r~~G~LA~~a 274 (472)
.. ..+ ++|.++--.. |..||.....
T Consensus 140 -~~--~G~-~~I~~i~~~~~~~~~~~R~~Gf~~~l~ 171 (305)
T 3huu_A 140 -YH--LGH-RHILFLQESGHYAVTEDRSVGFKQYCD 171 (305)
T ss_dssp -HH--TTC-CSEEEEEESSCBHHHHHHHHHHHHHHH
T ss_pred -HH--CCC-CeEEEEcCCcccchhHHHHHHHHHHHH
Confidence 22 244 5677774322 4456655443
No 123
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=23.66 E-value=2.7e+02 Score=25.40 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=49.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (472)
.+||++...-..|-...+++++.+.+.. ++..++. +-.+... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4899998766667677778887776642 2210221 0011111 1233
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
..++.|...++|++++.+.+.+.. ....+.+.+.+ +|||.+
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 90 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFF 90 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEe
Confidence 567778889999999988776531 12223343344 556654
No 124
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.45 E-value=63 Score=29.72 Aligned_cols=118 Identities=8% Similarity=-0.000 Sum_probs=66.2
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcE-EEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSK-ILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~-v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~ 167 (472)
+..+||++...-.-|-...+++++-+.+.. ++ .+ ++- ..+.. ..
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~ 54 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQK-EG-YTALIS--------------------------------FSTNSDVK 54 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECSSCCHH
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHH-CC-CCEEEE--------------------------------EeCCCChH
Confidence 346899999876777777788888776643 33 33 221 01111 11
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC-ccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND-IPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND-i~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
...+.++.|...++|++++.+ ..+ +.+. ...+|+| ++|++ ++..+.++++|-. .....+.+.+
T Consensus 55 ~~~~~~~~l~~~~vdgiIi~~--~~~-------~~~~--~~~iPvV----~~~~~~~~~~~~~V~~D~~-~~g~~a~~~L 118 (277)
T 3hs3_A 55 KYQNAIINFENNNVDGIITSA--FTI-------PPNF--HLNTPLV----MYDSANINDDIVRIVSNNT-KGGKESIKLL 118 (277)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC--CCC-------CTTC--CCSSCEE----EESCCCCCSSSEEEEECHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCEEEEcc--hHH-------HHHH--hCCCCEE----EEcccccCCCCEEEEEChH-HHHHHHHHHH
Confidence 234667888999999999998 211 1121 2245566 45666 5543336666632 1223333333
Q ss_pred HHhhhcCcceEEEEE
Q 012056 247 HVEAESIENGIGVVK 261 (472)
Q Consensus 247 ~~~A~s~~~rv~iVE 261 (472)
. ..+ ++|.++-
T Consensus 119 ~---~G~-~~I~~i~ 129 (277)
T 3hs3_A 119 S---KKI-EKVLIQH 129 (277)
T ss_dssp C---TTC-CEEEEEE
T ss_pred H---hCC-CEEEEEe
Confidence 3 454 5677774
No 125
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.76 E-value=1.2e+02 Score=24.37 Aligned_cols=57 Identities=23% Similarity=0.420 Sum_probs=45.9
Q ss_pred hhhcCCcccccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCC
Q 012056 152 IHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (472)
Q Consensus 152 ~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~ 209 (472)
-++.+|..+.|.-+.+|+..|++.++.++---++.+-|. |....+.+..+.++.|..
T Consensus 23 khnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvs 79 (112)
T 2lnd_A 23 KHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCE
T ss_pred hcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcc
Confidence 467888888888777899999999999998877777665 455678888888887764
No 126
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=22.56 E-value=28 Score=30.56 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
+.+++++.|++.+.+-++||||-.-++.+..+.+ .+.+--+|..++-|..+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~F 131 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYY 131 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEEC
Confidence 6788899999888889999999877766655433 35677789888777543
No 127
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=22.51 E-value=1.9e+02 Score=27.25 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=49.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CCh
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (472)
..+||++...-..|-...++.++.+.+.. ++. ++. +-.+... ...
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~~ 50 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGL-PYV--------------------------------PLTTEGSSEKG 50 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECTTCHHHH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EecCCCCHHHH
Confidence 45899999766667677777777776643 221 211 0011111 122
Q ss_pred HHHHHHHHHhC--CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccc
Q 012056 170 SKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (472)
Q Consensus 170 ~~i~~~l~~~~--Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (472)
.+.++.|...+ +|++|+.+.+... ...+.+.+.+.+ +|+|.+-
T Consensus 51 ~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~ 95 (332)
T 2rjo_A 51 IADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIW 95 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEES
T ss_pred HHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEEC
Confidence 35677777888 9999998876432 112233343444 5566553
No 128
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=21.63 E-value=4.5e+02 Score=23.79 Aligned_cols=126 Identities=7% Similarity=0.071 Sum_probs=65.5
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (472)
+..+||++...-..|=...++.++-+.+.. ++ .++. +..+... ..
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~ 64 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ-RG-YQLL--------------------------------IACSEDQPDN 64 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHH
Confidence 345899998766666667777777766643 22 2322 0001111 12
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i~ 247 (472)
..+.++.|...++|++++.+.+.+-. .+.+.+.+. .+|+|.+ |.+.+..+ .++++|-. .....+.+.+.
T Consensus 65 ~~~~~~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~--~iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~ 134 (293)
T 2iks_A 65 EMRCIEHLLQRQVDAIIVSTSLPPEH---PFYQRWAND--PFPIVAL----DRALDREHFTSVVGADQ-DDAEMLAEELR 134 (293)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSCTTC---HHHHTTTTS--SSCEEEE----ESCCCTTTCEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcH---HHHHHHHhC--CCCEEEE----CCccCcCCCCEEEecCH-HHHHHHHHHHH
Confidence 33567788889999999998765431 122223223 3556644 44443222 25555532 11222333333
Q ss_pred HhhhcCcceEEEEEe
Q 012056 248 VEAESIENGIGVVKL 262 (472)
Q Consensus 248 ~~A~s~~~rv~iVEv 262 (472)
. ..| ++|.++--
T Consensus 135 ~--~G~-~~I~~i~~ 146 (293)
T 2iks_A 135 K--FPA-ETVLYLGA 146 (293)
T ss_dssp T--SCC-SSEEEEEE
T ss_pred H--CCC-CEEEEEec
Confidence 2 244 56777754
No 129
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.24 E-value=66 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCceeeccccccccCc
Q 012056 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (472)
Q Consensus 196 a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (472)
...|.+.+++++...-|||+|+++|+..
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 3445555556667777999999998765
No 130
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=21.13 E-value=3e+02 Score=24.85 Aligned_cols=70 Identities=6% Similarity=0.022 Sum_probs=42.0
Q ss_pred CCeeEEEEccCCC--CCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccc-cCC
Q 012056 90 DEVHACIVTCGGL--CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-RGG 166 (472)
Q Consensus 90 ~~~~iaIltsGG~--apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss-R~~ 166 (472)
+..+||++...-. .|-...+++++-+.+.. .+ .++. + ..+. ...
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~----------------~---------------~~~~~~~~ 50 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YE-IKLE----------------F---------------MAPEKEED 50 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HT-CEEE----------------E---------------CCCSSTTC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cC-CEEE----------------E---------------ecCCCCCC
Confidence 3458999987555 67777777887776643 22 1221 0 0000 111
Q ss_pred -CChHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 167 -HDTSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 167 -~~~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
....+.++.|...++|++++.+.+..
T Consensus 51 ~~~~~~~~~~l~~~~vdgii~~~~~~~ 77 (289)
T 3brs_A 51 YLVQNELIEEAIKRKPDVILLAAADYE 77 (289)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSCTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 12345677888899999999987654
No 131
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=21.03 E-value=2.7e+02 Score=26.95 Aligned_cols=147 Identities=11% Similarity=0.053 Sum_probs=79.8
Q ss_pred eeEEEEc-cCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 92 VHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 92 ~~iaIlt-sGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
++++|+| |..+-| .... +.++. .++-++-=+.|=.-.+-++++.+.+-.....++.+.-||. +...
T Consensus 20 Mki~IvtDSt~dL~------~e~~----~~~~I-~vvPL~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSq--ps~~ 86 (298)
T 3jr7_A 20 MSYKVIVDSCGEFT------PEMK----ADGGF-EHVALGIQIEDTQWTDDDSLKQEELLLKIAESTSCAKTSC--PSPE 86 (298)
T ss_dssp CCEEEEEETTSCCC------HHHH----HHSSE-EEECCEEEETTEEEECSTTSCHHHHHHHHHHCSSCCEEEC--CCHH
T ss_pred CCEEEEEECCCCCC------HHHH----HhCCe-EEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCC--CCHH
Confidence 5899999 766666 1222 23442 4433222122211112257888888887777776666665 3455
Q ss_pred HHHHHHHHhCCcEEEEEc----CCCcHHHHHHHHHHHHH-c-CCCceeeccccccccCccCcCcccCchhHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIRQ-R-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIG----Gdgs~~~a~~L~~~~~~-~-~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~ 244 (472)
...+.+++ +-+.+++|. =.||+..|...++.+.+ + +.+|.|| |.- -.|.|..=.+..+++.++
T Consensus 87 ~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi------DS~----~~s~g~g~lv~~Aa~l~~ 155 (298)
T 3jr7_A 87 RYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVF------NSR----SASVGETLIALKVQQCEK 155 (298)
T ss_dssp HHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEE------ECS----SCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEEEE------CCC----chhHHHHHHHHHHHHHHH
Confidence 56666665 567787773 57889888877766543 2 3445444 211 124555555555544332
Q ss_pred ----------HHHHhhhcCcceEEEEEec
Q 012056 245 ----------AAHVEAESIENGIGVVKLM 263 (472)
Q Consensus 245 ----------~i~~~A~s~~~rv~iVEvM 263 (472)
.+....... +-+|+|+..
T Consensus 156 ~G~s~eeI~~~l~~~~~~~-~~~f~v~~L 183 (298)
T 3jr7_A 156 AGMTFEEVVESVECYIEEQ-HTYFVLENL 183 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHC-CEEEECSCC
T ss_pred cCCCHHHHHHHHHHHHhhC-eEEEEeCCh
Confidence 232222222 447888875
No 132
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=20.56 E-value=1.8e+02 Score=27.49 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=42.0
Q ss_pred hhhhcCCccccccc---CCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 151 DIHKRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 151 ~~~~~GGs~LGssR---~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
.+...|+.+..... +..++...++.+++.+.|++|+.+-+. .+..+.+.+++.|+++++++.
T Consensus 174 ~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 174 SFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGG---GALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp HHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTH---HHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCceEEec
Confidence 34456666554332 235788889999999999999876553 244455667778988777764
No 133
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=20.54 E-value=2.8e+02 Score=29.20 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhCCcEEEEE--------cCCC--cHHHHHHHHHHHHHcCCCceee----------------cccccc---
Q 012056 169 TSKIVDSIQDRGINQVYII--------GGDG--TQKGAAVIYEEIRQRGLKVAVA----------------GIPKTI--- 219 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivI--------GGdg--s~~~a~~L~~~~~~~~~~i~vv----------------gIPkTI--- 219 (472)
++.-++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++++| -+|.-+
T Consensus 35 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 114 (495)
T 1wdp_A 35 LKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDI 114 (495)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4555788999999998762 2333 2455678888888889988766 356554
Q ss_pred ---ccCccCcCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCc--ceEEEEEecC
Q 012056 220 ---DNDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESIE--NGIGVVKLMG 264 (472)
Q Consensus 220 ---DNDi~gtd~---------S~Gfd--------TA~~~~~~~i~~i~~~A~s~~--~rv~iVEvMG 264 (472)
|.||..||. |+|.| |+++...+.+.+.+++-.+.- .-|.=|+|=.
T Consensus 115 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGl 181 (495)
T 1wdp_A 115 GESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181 (495)
T ss_dssp HHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECC
T ss_pred hccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence 348988885 88888 889999999988887765532 2344555533
No 134
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.42 E-value=4.7e+02 Score=23.46 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=70.4
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCC
Q 012056 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (472)
Q Consensus 89 ~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~ 168 (472)
.+..+||++...-.-|-...+++++-+.+.. ++ .++.-+. +......
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~ 51 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RG-YIGVLFD-------------------------------ANADIER 51 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TT-CEEEEEE-------------------------------CTTCHHH
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHH
Confidence 3446899999776777777788888776643 22 2332110 0000112
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchh--HHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAINA 245 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdT--A~~~~~~~i~~ 245 (472)
..+.++.|...++|++|+.+-+. - ...+.+.+.+ +|+|.+ |++++.. -.++++|- +...+++ .
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~l~~~~--iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~---~ 117 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN-P----QTVQEILHQQ--MPVVSV----DREMDACPWPQVVTDNFEAAKAATT---A 117 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC-H----HHHHHHHTTS--SCEEEE----SCCCTTCSSCEEECCHHHHHHHHHH---H
T ss_pred HHHHHHHHHhCCCCEEEEecCCc-H----HHHHHHHHCC--CCEEEE----ecccCCCCCCEEEEChHHHHHHHHH---H
Confidence 34677888899999999999887 2 2333444444 556644 5554432 23455542 3333333 3
Q ss_pred HHHhhhcCcceEEEEEecC
Q 012056 246 AHVEAESIENGIGVVKLMG 264 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMG 264 (472)
+.. ..+ ++|.++--..
T Consensus 118 L~~--~G~-~~I~~i~~~~ 133 (276)
T 3jy6_A 118 FRQ--QGY-QHVVVLTSEL 133 (276)
T ss_dssp HHT--TTC-CEEEEEEECS
T ss_pred HHH--cCC-CeEEEEecCC
Confidence 322 244 5677775543
No 135
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=20.20 E-value=1.7e+02 Score=28.17 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=59.2
Q ss_pred eeEEEEc-cCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CCh
Q 012056 92 VHACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (472)
Q Consensus 92 ~~iaIlt-sGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (472)
+|++|+| |..+-| . ... +.++. .++-++-=+.|=.-.+-++++.+++-.....++ .--||.-. .++
T Consensus 3 Mki~IvtDSt~dl~---~---e~~----~~~~I-~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~-~p~TSqps~~~~ 70 (289)
T 1pzx_A 3 MPIEIITDSGADLP---Q---SYI----REHRI-AFLPLVVHWNGQDYKDGITIEPKQVYDAMRQGH-TVKTAQPSPLAM 70 (289)
T ss_dssp CCCEEEEEGGGCCC---H---HHH----HHTTC-EEECCEEEETTEEEEBTTTBCHHHHHHHHTTTC-CCEEECCCHHHH
T ss_pred CCEEEEEECCCCCC---H---HHH----hhCCe-EEEEEEEEECCEEEecCCCCCHHHHHHHHHhCC-CCeeCCCCHHHH
Confidence 3788998 655555 1 211 23443 443322212221101124688888888777776 55666643 467
Q ss_pred HHHHHHHHHhCCcEEEEEc----CCCcHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIR 204 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIG----Gdgs~~~a~~L~~~~~ 204 (472)
.++.+.+.+.+ +.+++|. =.||+..|...++.+.
T Consensus 71 ~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~ 108 (289)
T 1pzx_A 71 KELFLPYAKEN-RPCLYIAFSSKLSGTYQTAMAVRSELL 108 (289)
T ss_dssp HHHHHHHHHTT-CCEEEEECCTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CeEEEEECCCchhHHHHHHHHHHHhhH
Confidence 77878776767 5677774 4788888887776643
No 136
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=20.16 E-value=2.4e+02 Score=29.62 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhCCcEEEEE--------cCCC--cHHHHHHHHHHHHHcCCCceee----------------cccccc---
Q 012056 169 TSKIVDSIQDRGINQVYII--------GGDG--TQKGAAVIYEEIRQRGLKVAVA----------------GIPKTI--- 219 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivI--------GGdg--s~~~a~~L~~~~~~~~~~i~vv----------------gIPkTI--- 219 (472)
++.-++.||..|++++.+= -|.+ -..+=.+|++.+++.|+++++| -+|.-+
T Consensus 36 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 115 (498)
T 1fa2_A 36 VEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQI 115 (498)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4555788999999998762 2333 2455678888888889988766 355544
Q ss_pred ---ccCccCcCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCc--ceEEEEEecC
Q 012056 220 ---DNDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESIE--NGIGVVKLMG 264 (472)
Q Consensus 220 ---DNDi~gtd~---------S~Gfd--------TA~~~~~~~i~~i~~~A~s~~--~rv~iVEvMG 264 (472)
|.||..||. |+|.| |+++...+.+.+.+++-.+.- .-|.=|+|=.
T Consensus 116 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGl 182 (498)
T 1fa2_A 116 GDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGC 182 (498)
T ss_dssp TTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHHHHHTCEEEEEECC
T ss_pred hccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence 348988885 88988 889999999998887765532 2344555533
Done!