RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012056
(472 letters)
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 1019 bits (2636), Expect = 0.0
Identities = 404/463 (87%), Positives = 434/463 (93%)
Query: 5 GNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKI 64
G+ + K+V GDAGYVLEDVPHLTDY+PDLPTYPNPLQ N AYSVVKQYFVN DDTV+QKI
Sbjct: 1 GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60
Query: 65 VVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVS 124
VVHKDSPRGTHFRRAGPRQKVYF SDEV ACIVTCGGLCPGLNTVIREIVCGL +MYGV+
Sbjct: 61 VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120
Query: 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 184
+ILGIDGGYRGFYS+NTI LTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180
Query: 185 YIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244
YIIGGDGTQKGA+VIYEEIR+RGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240
Query: 245 AAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE 304
AAHVEAES+ENGIG+VKLMGRY GFIAMYATL SRDVDCCLIPESPFYLEG+GGL+EFIE
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIE 300
Query: 305 KRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHK 364
KRLKENGHMVIV+AEGAGQDL+AES++S + QDASGNKLL DVGLW+S KIKDHF ++ K
Sbjct: 301 KRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKK 360
Query: 365 MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFN 424
M INLKYIDPTYMIRAIPSNASDNVYCTLLA SAVHGA+AGYTGFTVGPVNGRHAYIPF
Sbjct: 361 MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFY 420
Query: 425 RINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPS 467
RI E+QN+VVITDRMWAR+LSSTNQPSFLS ++ + KRE
Sbjct: 421 RITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKREDEE 463
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 547 bits (1412), Expect = 0.0
Identities = 221/437 (50%), Positives = 289/437 (66%), Gaps = 17/437 (3%)
Query: 30 IPDL--PTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPR---GTH---FRRAGP 81
I L P+PL ++ A + +FV+ D V + + GT F +AGP
Sbjct: 12 IETLGECKIPSPLIYSLA-AGDTTHFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGP 70
Query: 82 RQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGF---YS 138
R+K+YF +V A IVTCGGLCPGLN VIR IV L+H YGV +ILGI GY+G Y
Sbjct: 71 REKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYG 130
Query: 139 KNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV 198
+ + LTP+VV DIH+ GGTILG+SRG D +IVD+++ IN +++IGGDGT +GA+
Sbjct: 131 HDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASA 190
Query: 199 IYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIG 258
I EEI +RGLK++V GIPKTIDNDI I KSFGF+TAVE+A AI AHVEA NGIG
Sbjct: 191 IAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIG 250
Query: 259 VVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIA 318
+VKLMGR+ GFIA YA L S+DV+ LIPE PF LEG GL +EKRL E GH VIV+A
Sbjct: 251 LVKLMGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVA 310
Query: 319 EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMI 378
EGAGQ+L ++ + DASGN L D+GL++ +IK++F + INLKYIDP+Y+I
Sbjct: 311 EGAGQELFDDT----GETDASGNPKLGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYII 365
Query: 379 RAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDR 438
R++P+NA+D+VYC L Q+AVH A+AG TG VG N R ++P + ++ +V
Sbjct: 366 RSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPIDLAVSKRKKVNPEGD 425
Query: 439 MWARVLSSTNQPSFLSA 455
+W VL ST QP +
Sbjct: 426 LWRSVLESTGQPRSMGN 442
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 517 bits (1334), Expect = 0.0
Identities = 209/419 (49%), Positives = 281/419 (67%), Gaps = 10/419 (2%)
Query: 53 FVNVDDTVSQKIVVHKD--SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVI 110
FV+ + + D + RAGPR+ +YF EV A IVTCGGLCPGLN VI
Sbjct: 47 FVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVI 106
Query: 111 REIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170
RE+V L + YGV I G GY+G Y ++ I L PK V IH+ GGTILG+SRGG D
Sbjct: 107 RELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPK 166
Query: 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF 230
+VD++ GIN ++ +GGDGT +GA IY+E+R+R L ++V GIPKTIDNDIP+ID+SF
Sbjct: 167 VMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESF 226
Query: 231 GFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP 290
GF TAVEEAQ AI AA+VEA+S +NG+G+VKLMGR GFIA++A++ S DV+ CLIPE
Sbjct: 227 GFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFD 286
Query: 291 FYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLW 350
LE G+ E+IE+RL++ GH VIV+AEGAGQ L L DASGNK L D+G++
Sbjct: 287 IPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADLDLG--TDASGNKKLWDIGVY 341
Query: 351 ISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFT 410
+ +I + + K +KYIDP+YMIRA+P+NA+D +CT LAQ+AVHGA+AG+TGF
Sbjct: 342 LKDEITK-YLKKKKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFI 400
Query: 411 VGPVNGRHAYIPFNRINER-QNQVVITDRMWARVLSSTNQPSFL-SANELAKFKREKPS 467
+G V+ + IP ++ + +V R+W R+L+ T QPSFL + +R+ S
Sbjct: 401 IGHVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLNNEEIERHQRRQLES 459
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 460 bits (1186), Expect = e-161
Identities = 207/377 (54%), Positives = 269/377 (71%), Gaps = 8/377 (2%)
Query: 78 RAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY 137
RAGPR+K+YF +EV A IVTCGGLCPGLN VIR+IV L +YGV I+GI GYRGF+
Sbjct: 40 RAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTL-EIYGVKNIVGIPFGYRGFF 98
Query: 138 SKN--TINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195
K + L+ KVV +IH GG++LG SRGG TS IVDSI+ RGIN ++++GG+GT G
Sbjct: 99 EKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAG 158
Query: 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIEN 255
A I+ E R+R +KV+V G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++EA S +
Sbjct: 159 ANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 218
Query: 256 GIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVI 315
GIG+VKLMGR GFIAM+A+L S VD CLIPE PF L+G G+ +E ++ G V+
Sbjct: 219 GIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVV 278
Query: 316 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPT 375
+AEGAGQDLL ++ N DASGN +L D+G+ + +IK HF + + ++KYIDPT
Sbjct: 279 CVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIKKHFKDI-GVPADVKYIDPT 333
Query: 376 YMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVI 435
YMIRA +NASD + CT+L Q+AVHGA AG++G TVG N + Y+P + +V
Sbjct: 334 YMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDP 393
Query: 436 TDRMWARVLSSTNQPSF 452
RMW R L+ST QP F
Sbjct: 394 NSRMWHRCLTSTGQPDF 410
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 228 bits (583), Expect = 6e-71
Identities = 105/335 (31%), Positives = 163/335 (48%), Gaps = 39/335 (11%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
I+T GG PG+N VIR +V + ++ GI GY G + LT + V+D+
Sbjct: 7 ILTSGGDAPGMNAVIRAVVRTAIKE---GLEVFGIYNGYLGLLEGDIKPLTREDVDDLIN 63
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT LG++R + ++++ GI+ + +IGGDG+ GAA++ EE
Sbjct: 64 RGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----G 118
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ V G+PKTIDNDI D + GFDTA+E A AI+ A S I +V++MGR+ G+
Sbjct: 119 IPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSH-ERIFIVEVMGRHAGW 177
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKR-LKENGHMVIVIAEGAGQDLLAE 328
+A+ A L + D LIPE P L E + E KR + H +IV+AEGA +
Sbjct: 178 LALAAGLAT-GADIILIPEEPADLIIEELIAEIKAKREARGKKHAIIVVAEGAIDQI--- 233
Query: 329 SLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDN 388
+G +LL + ++ + + ++ R +A D
Sbjct: 234 --------GENGAELLAAIEELLALGDFE-----------TRVTVLGHIQRGGTPSAFDR 274
Query: 389 VYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPF 423
V + L +AV + G TG+ VG N + ++P
Sbjct: 275 VLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPI 309
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 171 bits (435), Expect = 2e-49
Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 25/236 (10%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V + G ++ GI GY G + + L K V+DI
Sbjct: 6 VLTSGGDAPGMNAAIRAVVRTAISE--G-LEVYGIYDGYAGLLEGDIVKLDLKSVSDIIN 62
Query: 155 RGGTILGTSRGGHDT-----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTILG++R +K +++++ GI+ + +IGGDG+ GA + E
Sbjct: 63 RGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ V G+P TIDNDI D + GFDTA+ A AI+ A S E + +V++MGR+ G
Sbjct: 117 IPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHER-VFIVEVMGRHAGD 175
Query: 270 IAMYATL-GSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG--HMVIVIAEGAG 322
+A++A + G +V LIPE PF +E L I+K +E G H +IV+AEG
Sbjct: 176 LALHAGIAGGAEV--ILIPEVPFDIE---ELCAKIKKG-RERGKKHAIIVVAEGVM 225
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 165 bits (419), Expect = 4e-47
Identities = 114/340 (33%), Positives = 172/340 (50%), Gaps = 29/340 (8%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-TPKVVNDIHK 154
++T GG CPGLN VIR +V YG +++GI G+RG +T+ L + V I
Sbjct: 4 VLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILP 62
Query: 155 RGGTILGTSRGG------HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208
RGGTILG+SR KIV ++++ G++ + IGGDGT A + +GL
Sbjct: 63 RGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIA----RRLADKGL 118
Query: 209 KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
V G+PKTIDND+ D +FGFDTAVE A A++ H AES + + VV++MGR+ G
Sbjct: 119 PVV--GVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES-HHRVMVVEVMGRHAG 175
Query: 269 FIAMYATL-GSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-HMVIVIAEGAGQDLL 326
+IA+++ + G DV LIPE PF ++ + E + +R ++V+AEGA +
Sbjct: 176 WIALHSGIAGGADV--ILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGA-KPKG 229
Query: 327 AESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNAS 386
E + +DA G+ L +G W++ +I+ I + ++ R +A
Sbjct: 230 GEMVVQEGVKDAFGHVRLGGIGNWLAEEIERR------TGIETRATVLGHLQRGGSPSAF 283
Query: 387 DNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRI 426
D V T +AV G G V Y+P
Sbjct: 284 DRVLATRFGVAAVDLVHEGQFGHMVALRGTDIVYVPIAEA 323
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 161 bits (410), Expect = 1e-45
Identities = 100/329 (30%), Positives = 153/329 (46%), Gaps = 37/329 (11%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V G ++ GI GY G + L + V+DI R
Sbjct: 5 VLTSGGDAPGMNAAIRGVVRSA-IAEG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINR 62
Query: 156 GGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGTI+G++R + K ++++ GI+ + +IGGDG+ GA ++ EE +
Sbjct: 63 GGTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGF 122
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
V G+P TIDNDI D + GFDTA++ AI+ A S VV++MGR+CG I
Sbjct: 123 NVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDI 181
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG--HMVIVIAEGAGQDLLAE 328
A+ A L + D IPE P E E + + I+KR +E G H ++++AEGA
Sbjct: 182 ALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKR-RERGKRHGIVIVAEGAIDF---- 235
Query: 329 SLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIR-AIPSNASD 387
+ + L + V + + L ++ R P+ A D
Sbjct: 236 -----IPKPITEKLLAKLVEERLGFDTRATV---------LGHVQ-----RGGTPT-AFD 275
Query: 388 NVYCTLLAQSAVHGAVAGYTGFTVGPVNG 416
+ + L AV + G G VG N
Sbjct: 276 RILASRLGAEAVELLLEGTGGTPVGIQNL 304
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 128 bits (324), Expect = 9e-34
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 20/232 (8%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
I+T GG PG+N IR +V +YH + V GI GY+G + L K V+ I
Sbjct: 4 ILTSGGDAPGMNAAIRAVVRTAIYHGFEV---YGIRRGYKGLINGKIEPLESKNVSGIIH 60
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTILGT+R + K V++++ GI + +IGGDG+ GA +YEE
Sbjct: 61 RGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GG 115
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ V G+P TIDNDIP D + GFDTA+ A++ A S E V+++MGR+ G
Sbjct: 116 IPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAF-VIEVMGRHAGD 174
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-HMVIVIAEG 320
+A+YA + + + +IPE + ++ L + ++++ + H +I++AEG
Sbjct: 175 LALYAGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEG 222
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 128 bits (323), Expect = 2e-33
Identities = 95/332 (28%), Positives = 145/332 (43%), Gaps = 57/332 (17%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V G+ ++ GI GY G + + + L V+DI R
Sbjct: 5 VLTSGGDAPGMNAAIRGVV-RSAIAEGL-EVYGIRDGYAGLIAGDIVPLDRYSVSDIINR 62
Query: 156 GGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGT LG++R +K ++ ++ GI+ + +IGGDG+ GA + E
Sbjct: 63 GGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GF 116
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
G+P TIDNDIP D + GFDTA+ AI+ + S I VV++MGR+CG I
Sbjct: 117 PCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTSSS-HQRISVVEVMGRHCGDI 175
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAGQ-DL 325
A+ A + + +IPE+ F E E K E G H ++V+AEG D
Sbjct: 176 ALAAGIAG-GAEFIVIPEAEFDRE------EVANRIKAGIERGKKHAIVVVAEGVYDVDE 228
Query: 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNA 385
LA+ ++ + L ++ R A
Sbjct: 229 LAKEIEEATGFETRATVL-------------------------------GHIQRGGSPTA 257
Query: 386 SDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR 417
D + + + AV +AG G VG N +
Sbjct: 258 FDRILASRMGAYAVELLLAGKGGLAVGIQNEQ 289
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 125 bits (315), Expect = 1e-32
Identities = 83/243 (34%), Positives = 127/243 (52%), Gaps = 26/243 (10%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V + G+ ++ GI GY G + N L + V+DI +
Sbjct: 5 VLTSGGDAPGMNAAIRAVVRSAIAE--GL-EVYGIYEGYAGLVAGNIKQLDWESVSDIIQ 61
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT +G++R K ++++ GI+ + +IGGDG+ GA ++ E G
Sbjct: 62 RGGTFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE---HGFN 118
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDI D + GFDTA+ AI+ A S VV++MGR+CG
Sbjct: 119 CV--GLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAGQDL 325
+A+ A + D IPE+PF+ E E KR +E G H ++++AEGA +
Sbjct: 176 LALVAGIAG-GADYIFIPEAPFWEE------ELCNRLKRGRERGKRHNIVIVAEGAIDPI 228
Query: 326 LAE 328
+E
Sbjct: 229 TSE 231
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 125 bits (315), Expect = 5e-32
Identities = 91/280 (32%), Positives = 142/280 (50%), Gaps = 33/280 (11%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIH 153
I+T GG C GLN VIR +V YG +++GI +G ++ I L V+D+
Sbjct: 9 ILTSGGDCAGLNAVIRAVVHRARGTYGW-EVIGIRDATQGLMARPPQYIELDLDQVDDLL 67
Query: 154 KRGGTILGTSRGGH-------DTSK------IVDSIQDRGINQVYIIGGDGTQKGAAVIY 200
+ GGTILGT+ G D S I+D G++ + IGGDG+ I
Sbjct: 68 RMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLA----IL 123
Query: 201 EEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVV 260
+ Q+G + + GIPKTIDND+ + S GFDTAV A A++ H A S N + ++
Sbjct: 124 RRLAQQG-GINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAAS-HNRVMIL 181
Query: 261 KLMGRYCGFIAMYATL-GSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIA 318
++MGR G IA+ A + G DV LIPE P+ LE + + I +R +E ++V++
Sbjct: 182 EVMGRDAGHIALAAGIAGGADV--ILIPEIPYTLE---NVCKKIRERQEEGKNFCLVVVS 236
Query: 319 EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDH 358
E + E + + + A G +G +++ +I +
Sbjct: 237 EA----VRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAER 272
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 101 bits (254), Expect = 2e-23
Identities = 110/417 (26%), Positives = 178/417 (42%), Gaps = 85/417 (20%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGV----SKILGIDGGYRGFYSKNTINLTPKVVND 151
++T GGL P L++ V GL Y +I+ GY+G ++I +TP V +
Sbjct: 8 LLTAGGLAPCLSS----AVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRAN 63
Query: 152 ---IHKRGGTILGTSR----------------GGHDTSKI-VDSIQDRGINQVYIIGGDG 191
+H+ GG+ +G SR G + K+ + + G++ ++ IGGD
Sbjct: 64 AGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDD 123
Query: 192 TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAE 251
T AA + + + G + V G+PKTIDND+ I +S G TA E+ A +V E
Sbjct: 124 TNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQG--ARFFDNVINE 181
Query: 252 SIENG--IGVVKLMGRYCGFIAMYATLGSR-------------------DVDCCLIPESP 290
N + + ++MGR CG++ R D+ +PE
Sbjct: 182 HSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMA 241
Query: 291 FYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQ---DASGNKLLQ-- 345
F LE E E ++ + E G++ I ++EGAG D + +++ ++ DA G+ L
Sbjct: 242 FDLEAEA---ERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTI 298
Query: 346 DVGLWISHKIKDHFARL---HKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQS----A 398
+ G W + FA L K+ + Y R+ P+NA D L +S A
Sbjct: 299 NPGAWFA----KQFAELLGAEKVMVQ----KSGYFARSAPANAED----LRLIKSMVDLA 346
Query: 399 VHGAVAGYTGFTVG---PVNGRHAYIPFNRINERQNQVVITDRMW-ARVLSSTNQPS 451
V A+ G +G +G G+ I F RI + + T W +L QP
Sbjct: 347 VECALRGVSG-VIGHDEEQGGKLRAIEFPRI--KGGKAFDTSTPWFTELLDEIGQPY 400
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 95.7 bits (239), Expect = 2e-21
Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 33/258 (12%)
Query: 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF 230
++++ + I + GG+ + A + + ++ G + GIPKTIDND+P D
Sbjct: 94 RLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCP 153
Query: 231 GFDTAVEEAQRAINAAHVEAESIENG--IGVVKLMGRYCGFIAMYATLGSRDVDCC---- 284
GF +A + ++ A ++ ++ N + ++++MGR+ G++A A L ++ D
Sbjct: 154 GFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLI 213
Query: 285 LIPESPFYLEGEGGLYEFIEK---RLKENGHMVIVIAEGA-GQD--LLAESLQSMNQQDA 338
+PE PF E +F+ +K G+ V+V++EG D +AE+ +DA
Sbjct: 214 YLPERPFDEE------KFLADVRAIVKRYGYCVVVVSEGIRDADGKFIAEAG---LAEDA 264
Query: 339 SGNKLLQDVGLWISHKIKDHFARLHKMAINLKY--IDPTYMIRAIPSNAS--DNVYCTLL 394
G+ L V +++ IK+ + K Y+ RA AS D +
Sbjct: 265 FGHAQLGGVAPVLANLIKE--------KLGKKVHWAVLDYLQRAARHIASKTDVEEAYAV 316
Query: 395 AQSAVHGAVAGYTGFTVG 412
++AV A+AG G
Sbjct: 317 GKAAVEYALAGKNGVMPA 334
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 95.5 bits (237), Expect = 9e-21
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
I+ GG PG + VI I S+++G GG G YSKN + +T ++N
Sbjct: 182 IILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNL 241
Query: 156 GG-TILGTSRGG----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GG +L + RG D I + + +N + IIGGDG+ AA+I E +R + +
Sbjct: 242 GGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPI 301
Query: 211 AVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
++ GIPKTID D+ I+ SFGFDTA + I + ++ N VV++MGR
Sbjct: 302 SIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSAS 361
Query: 269 FIAMYATLGSR 279
+ + L +R
Sbjct: 362 HVVLECALQTR 372
Score = 40.8 bits (95), Expect = 0.002
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 17/189 (8%)
Query: 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY----SKNTIN 143
+S E+ IV PG V+ CGLY + K G+ + G Y +K I
Sbjct: 833 ISFEIKIGIVFLSRQAPGAMNVL----CGLYRRLKLLK--GVCIAFYGLYGLLNNKYIII 886
Query: 144 LTPKVVNDIHKRGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV 198
+ +++ G + G S + +K+ +++ + +N + + G + T AA+
Sbjct: 887 DDDNIAKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAAL 946
Query: 199 IYEEIRQRGLKVAVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHVEAESIENG 256
+ E ++ + +V GIP T N++ +I+ GFD++ + I +A S+
Sbjct: 947 LAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTDAVSMPKY 1006
Query: 257 IGVVKLMGR 265
++LMGR
Sbjct: 1007 WHFIRLMGR 1015
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 94.3 bits (235), Expect = 1e-20
Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 16/204 (7%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYH----MYGVSKILGIDGGYRGFYSKNTINLTPKVVND 151
++ GG PG + VI GL+ + SK+ G GG G N + LT ++++
Sbjct: 72 VILSGGQAPGGHNVI----SGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDT 127
Query: 152 IHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR 206
GG I+G+ R +T +K + + + ++ + IIGGD + AA++ E +
Sbjct: 128 YRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKH 187
Query: 207 GLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMG 264
GLK V G+PKTID D+ I+ SFGFDTA + I +A S + ++LMG
Sbjct: 188 GLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMG 247
Query: 265 RYCGFIAMYATLGSRDVDCCLIPE 288
R IA+ L + + C+I E
Sbjct: 248 RSASHIALECALQTHP-NVCIIGE 270
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 90.9 bits (226), Expect = 2e-19
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 8/219 (3%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
I+ G G+N R V Y + ++ I G+ G + LT V
Sbjct: 394 IIHVGAPAGGMNAATRSAV--RYALARGHTVIAIHNGFSGLARHDVRELTWSDVEGWVGE 451
Query: 156 GGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--GLKVA 211
GG+ LGT+R G D I Q I+ + IIGG + A + R++ ++
Sbjct: 452 GGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFE-ALYQLDAAREKYPAFRIP 510
Query: 212 VAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIA 271
+ IP TI N++P + S G DTA+ E + A + + + VV+ MG Y G++A
Sbjct: 511 MVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLA 570
Query: 272 MYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310
A L + D IPE L+ E +++ E
Sbjct: 571 TMAGL-ATGADAAYIPEEGISLKDLQEDIEHLKETFAEG 608
Score = 86.6 bits (215), Expect = 6e-18
Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 45/259 (17%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG G+N +R +V +Y G ++ I GY+G N + V I
Sbjct: 5 VLTSGGDAQGMNAAVRAVVRMAIY--VG-CRVYAIREGYQGLVDGGDNIEEAQWEDVRGI 61
Query: 153 HKRGGTILGTSR--------GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV------ 198
GGTI+GT+R G K ++ GI+ + +IGGDG+ GA +
Sbjct: 62 LSLGGTIIGTARCKEFRERPG---RLKAARNLVSNGIDALVVIGGDGSLTGADLFREEWP 118
Query: 199 -----------IYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247
I E + + + G+ +IDND+ D + G D+A+ AI+A
Sbjct: 119 SLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAIDAIS 178
Query: 248 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRL 307
A+S + VV++MGR+CG++A+ A + + D IPE P E G + + +L
Sbjct: 179 STAQSHQRAF-VVEVMGRHCGYLALMAAI-ATGADYVFIPERP----PEEGWEDQLCHKL 232
Query: 308 KENGHM-----VIVIAEGA 321
K N ++++AEGA
Sbjct: 233 KRNRKAGKRKTIVIVAEGA 251
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 88.0 bits (218), Expect = 1e-18
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
IV GG PG + VI + L S + G GG G + I L + +
Sbjct: 77 IVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNT 136
Query: 156 GG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GG ++ + R +T + ++ + ++ + +IGGD + AA++ E R +GLK
Sbjct: 137 GGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKT 196
Query: 211 AVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
V G+PKTID D+ I+ SFGFDTA + I +A S VKLMGR
Sbjct: 197 RVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSAS 256
Query: 269 FIAMYATLGSRDVDCCLIPE 288
IA+ L + + C+I E
Sbjct: 257 HIALECALKTHP-NICIISE 275
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 85.4 bits (212), Expect = 9e-18
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGV------SKILGIDGGYRGFYSKNTINLTPKVV 149
++ GG PG + VI GL+ G+ SK+ G GG G + I +T +V+
Sbjct: 75 VILSGGQAPGGHNVI----AGLFD--GLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVI 128
Query: 150 NDIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR 204
++ GG ++G+ R +T +++++ ++ + IIGGD + AA++ E
Sbjct: 129 DEYRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFA 188
Query: 205 QRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKL 262
+ G K V G+PKTID D+ I+ SFGFDTA + I +A S + +KL
Sbjct: 189 KHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKL 248
Query: 263 MGRYCGFIAMYATLGSRDVDCCLIPE 288
MGR IA+ L + + CLI E
Sbjct: 249 MGRSASHIALECALQTHP-NICLISE 273
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 84.9 bits (210), Expect = 2e-17
Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 39/256 (15%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYS--KNTINLTPKVVNDI 152
++T GG G+N +R +V G+Y G +K+ + GY G + V++
Sbjct: 8 VLTSGGDAQGMNAAVRAVVRMGIY--VG-AKVFFVYEGYEGLVKGGDYIKQAEWESVSNW 64
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAV--------- 198
+ GGTI+G++R + ++ RGI + +IGGDG+ GA +
Sbjct: 65 LQEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLL 124
Query: 199 --------IYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
I EE + + + G+ +IDND D + G D+A+ ++A A
Sbjct: 125 EELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTA 184
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310
+S + V+++MGR+CG++A+ + L + D IPE P E G + + +RL E+
Sbjct: 185 QSHQRTF-VLEVMGRHCGYLALVSGLAT-GADWIFIPERP----PEDGWEDQMCRRLSEH 238
Query: 311 GHM-----VIVIAEGA 321
+I++AEGA
Sbjct: 239 RSRGKRLNIIIVAEGA 254
Score = 78.7 bits (194), Expect = 2e-15
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 12/205 (5%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
IV G G+N +R V Y + + I G+ G + L V R
Sbjct: 394 IVNVGAPAAGMNAAVRSAV--RYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGR 451
Query: 156 GGTILGTSR--GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG----LK 209
GG+ LGT R D I + Q GI+ + I+GG KG + + R
Sbjct: 452 GGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKG---LLQLREAREQYEEFC 508
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ + IP T+ N++P D S G DTA+ + + A + + +V+ MG YCG+
Sbjct: 509 IPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIVETMGGYCGY 568
Query: 270 IAMYATLGSRDVDCCLIPESPFYLE 294
+A L D + E PF +
Sbjct: 569 LATMTGLAV-GADAAYVFEEPFNIR 592
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 80.0 bits (197), Expect = 9e-16
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
+V GG G + VI ++ + S++ G GG G YS+ LT +N I +
Sbjct: 107 VVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQ 166
Query: 156 GG-TILGTSRGGHDTSK-------IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG 207
GG I+ + R +T + I + ++ ++ + +IGGD + AAV+ E ++
Sbjct: 167 GGFNIICSGRHKIETEEQMRASLEICEKLK---LHGLVVIGGDDSNTNAAVLAEYFKRNS 223
Query: 208 LKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGR 265
V G PKTID D+ VI+ SFG+DTAV+ I + ++ G V+LMGR
Sbjct: 224 SSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGR 283
Query: 266 YCGFIAMYATLGSR 279
I + L +R
Sbjct: 284 SASHITLECGLQTR 297
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 69.8 bits (171), Expect = 1e-12
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGV----SKILGIDGGYRGFYSKNTINLTPKVVND 151
+V CG PG + VI GL+ S +LG GG G +++ T+ +T V++
Sbjct: 84 VVFCGRQSPGGHNVI----WGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLST 139
Query: 152 IHKRGG-TILGTSRGGHDTSKIVD----SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR 206
+GG +LG ++ T++ V+ + + ++ + IIGG + AA + E +
Sbjct: 140 YKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEA 199
Query: 207 GLKVAVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMG 264
K V G+P T++ D+ ++ + GFDT + + I+ +A S E ++LMG
Sbjct: 200 KCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMG 259
Query: 265 RYCGFIAMYATLGS 278
R +A+ L S
Sbjct: 260 RKASHVALECALQS 273
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 68.7 bits (168), Expect = 2e-12
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLY-----HMYGVSKILGIDGGYRGFYSKNTINLTPKVVN 150
+V GG PG + VI G++ H G S + G GG G + LT + +
Sbjct: 101 VVLSGGQAPGGHNVI----SGIFDYLQEHAKG-SVLYGFKGGPAGIMKCKYVELTAEFIY 155
Query: 151 DIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
+GG ++ + R +T + ++ ++ + +IGGD + A ++ E R
Sbjct: 156 PYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRA 215
Query: 206 RGLKVAVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLM 263
+ LK V G PKTID D+ + SFGFDTA + I ++A S V+LM
Sbjct: 216 KNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLM 275
Query: 264 GRYCGFIAMYATL 276
GR I + L
Sbjct: 276 GRAASHITLECAL 288
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 615
Score = 35.2 bits (81), Expect = 0.089
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 151 DIHKR---GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGD----GTQKGAAVIYEEI 203
DIH GG I G S G T ++ +I + I Q I G+ G K I+E+I
Sbjct: 512 DIHVNVIGGGRIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKI 571
Query: 204 ---RQRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQR 241
+Q G+K V IP+ D+P + F + +EE R
Sbjct: 572 YGAKQAGIKTVV--IPEENLKDVPQGLPGIEVKFVSTIEELMR 612
>gnl|CDD|215977 pfam00532, Peripla_BP_1, Periplasmic binding proteins and sugar
binding domain of LacI family. This family includes the
periplasmic binding proteins, and the LacI family
transcriptional regulators. The periplasmic binding
proteins are the primary receptors for chemotaxis and
transport of many sugar based solutes. The LacI family
of proteins consist of transcriptional regulators
related to the lac repressor. In this case, generally
the sugar binding domain binds a sugar which changes the
DNA binding activity of the repressor domain
(pfam00356).
Length = 281
Score = 31.7 bits (72), Expect = 0.68
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 287 PESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASG 340
+ PF + L + I K K++G V ++A G G+D L ++ + A G
Sbjct: 11 LDEPFSQD----LVKGITKAAKDHGFDVFLLAVGDGEDTLTNAIDLLLASGADG 60
>gnl|CDD|107306 cd06311, PBP1_ABC_sugar_binding_like_3, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 274
Score = 31.6 bits (72), Expect = 0.80
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 178 DRGINQVYI----IGGDGTQKG---AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF 230
DRG++ + GD G I ++ G V + GIP IDN ++
Sbjct: 92 DRGLSSPGAQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDN-----ERVD 146
Query: 231 GFDTAVE 237
FD A+
Sbjct: 147 AFDAAIA 153
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport
systems, periplasmic component [Amino acid transport and
metabolism].
Length = 366
Score = 31.3 bits (71), Expect = 0.98
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 148 VVNDIHKRGGTIL---GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR 204
+ GG ++ + G D S +V I+ G + V + G AA+ + R
Sbjct: 168 FKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPD---AALFLRQAR 224
Query: 205 QRGLKVAVAGI 215
++GLK + G
Sbjct: 225 EQGLKAKLIGG 235
>gnl|CDD|182193 PRK10014, PRK10014, DNA-binding transcriptional repressor MalI;
Provisional.
Length = 342
Score = 31.2 bits (71), Expect = 1.0
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 289 SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASG 340
+PFY E GL E +E G MV ++ G + LA+ ++ Q G
Sbjct: 76 APFYAELTAGLTEALE----AQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDG 123
>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 30.7 bits (70), Expect = 1.2
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 143 NLT--PKVVNDIHKR-GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVI 199
NL+ P VV + K T L + K VD G +Q + + T+ +
Sbjct: 48 NLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQ-FTFHIEATEDDPKAV 106
Query: 200 YEEIRQRGLKVAVAGIPKT-IDNDIPVIDK 228
+IR+ G+KV VA PKT ++ P+ID
Sbjct: 107 ARKIREAGMKVGVAIKPKTPVEVLFPLIDT 136
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 30.1 bits (68), Expect = 2.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 156 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215
+ T+ DT V + +RG++ + GGDGT A + E + G V V GI
Sbjct: 78 QESTPRTTA--EDTINAVRRMVERGVDLIVFAGGDGT---ARDVAEAV---GADVPVLGI 129
Query: 216 P 216
P
Sbjct: 130 P 130
>gnl|CDD|235484 PRK05469, PRK05469, peptidase T; Provisional.
Length = 408
Score = 30.1 bits (69), Expect = 3.0
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 21/72 (29%)
Query: 196 AAVIYEEIRQRGLK--------VAVAGIPKTIDNDIPVIDKSFGF----DTAVEEAQRAI 243
A ++ EE+++ GL+ +A +P +D D+P I GF DTA +
Sbjct: 35 AKLLVEELKELGLQDVTLDENGYVMATLPANVDKDVPTI----GFIAHMDTAPDF----- 85
Query: 244 NAAHVEAESIEN 255
+ +V+ + IEN
Sbjct: 86 SGKNVKPQIIEN 97
>gnl|CDD|224665 COG1751, COG1751, Uncharacterized conserved protein [Function
unknown].
Length = 186
Score = 29.4 bits (66), Expect = 3.2
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 135 GFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQK 194
GF K T + +V ++ +RG +L H S + SI + GG +
Sbjct: 62 GFEEKGTQEMDEEVRKELKERGAKVL---TQSHALSGVERSISRK-------FGGYSPLE 111
Query: 195 GAAVIYEEIR--QRGLKVAV--------AGIPKTIDNDIPVIDKSFGFDTAV 236
+I E +R +G+KV V AG+ + I + G DTA+
Sbjct: 112 ---IIAETLRMFGQGVKVCVEITIMAADAGLIPVSEEVIAIGGTERGADTAL 160
>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins. A well conserved group of
domains found in all three kingdoms of life, with no
defined function. LabA, a member from Synechococcus
elongatus PCC 7942, has been shown to play a role in
cyanobacterial circadian timing. It is required for
negative feedback regulation of the
autokinase/autophosphatase KaiC, a central component of
the circadian clock system. In particular, LabA seems
necessary for KaiC-dependent repression of gene
expression. Another member is the N-terminal domain of
limkain b1, a human autoantigen associated with
cytoplasmic vesicles. Curiously, a gene labeled NicB
from Pseudomonas putida S16, which is described as a
putative NADH-dependent hydroxylase involved in the
microbial degradation of nicotine also falls in the
LabA_like family. LabA_like domains exhibit some
similarity to the NYN domain, a distant relative of the
PIN-domain nucleases.
Length = 151
Score = 29.0 bits (65), Expect = 3.6
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223
++ +R I+ + ++ GD E +R+RG +V V G ++ + +
Sbjct: 93 DALELAYERRIDTIVLVSGDSDFVPLL---ERLRERGKRVIVVGFRRSASSAL 142
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 29.2 bits (66), Expect = 4.2
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGF 232
+ + G++ + ++GGDGT AA + + + GI + GF
Sbjct: 28 TREMVEEGVDLIVVLGGDGTALDAARLL-----GDHDIPILGINT----------GTLGF 72
Query: 233 DTAVEEAQRAINAAHVEAESIE 254
T + A + +
Sbjct: 73 LTEFSPEEAAKLLDALLEGEYK 94
>gnl|CDD|236413 PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.
Length = 367
Score = 29.2 bits (66), Expect = 4.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 EDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDT 59
ED HL D+I D +P AAY ++K+ +V DT
Sbjct: 269 EDDSHLGDFIED-QDATSPADH-AAYELLKEQLEDVLDT 305
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 29.5 bits (67), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 398 AVHGAVAGYTGFTVGPVNGRHAYIP 422
A HG GY G +V PV HA P
Sbjct: 617 AAHGESEGYEGLSVNPVPLDHANCP 641
>gnl|CDD|107257 cd01544, PBP1_GalR, Ligand-binding domain of DNA transcription
repressor GalR which is one of two regulatory proteins
involved in galactose transport and metabolism.
Ligand-binding domain of DNA transcription repressor
GalR which is one of two regulatory proteins involved in
galactose transport and metabolism. Transcription of the
galactose regulon genes is regulated by Gal
iso-repressor (GalS) and Gal repressor (GalR) in
different ways, but both repressors recognize the same
DNA binding site in the absence of D-galactose. GalR is
a dimeric protein like GalS and is exclusively involved
in the regulation of galactose permease, the
low-affinity galactose transporter. GalS is involved in
regulating expression of the high-affinity galactose
transporter encoded by the mgl operon. GalS and GalR are
members of the LacI-GalR family of transcription
regulators and both contain the type I periplasmic
binding protein-like fold. Hence, they are structurally
homologous to the periplasmic sugar binding of ABC-type
transport systems.
Length = 270
Score = 28.6 bits (65), Expect = 6.9
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR 206
K +D + + G ++ IGG+ E+ R+
Sbjct: 100 VEKALDYLLELGHTRIGFIGGEEKTTDGHEYIEDPRET 137
>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins.
EF-Tu subfamily. This subfamily includes orthologs of
translation elongation factor EF-Tu in bacteria,
mitochondria, and chloroplasts. It is one of several
GTP-binding translation factors found in the larger
family of GTP-binding elongation factors. The eukaryotic
counterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this family. EF-Tu is
one of the most abundant proteins in bacteria, as well
as, one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 195
Score = 27.9 bits (63), Expect = 8.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 233 DTAVEEAQRA--INAAHVEAES 252
D A EE R IN AHVE E+
Sbjct: 41 DKAPEEKARGITINTAHVEYET 62
>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
Length = 496
Score = 28.5 bits (63), Expect = 8.7
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 74 THFRRAGPRQKVYFVSDEVHACIVTCGG----LCPGLNTV-IREIVCGLYHM-YGVSKIL 127
T+ R R+ ++ V DE++A V GG + +N V I E+ L H+ Y +SK +
Sbjct: 222 TNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM 281
Query: 128 GIDGGYRGF-YSKN 140
G+ G G YS N
Sbjct: 282 GLPGFRVGIVYSFN 295
>gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; and C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost this catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 260
Score = 28.3 bits (63), Expect = 9.4
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 26/92 (28%)
Query: 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDK 228
K+ D ++D G+ +++ I+E G + ID
Sbjct: 28 IDKL-DYLKDLGVTAIWLTP----------IFESPEYDGYDKDDGYLDYYE------IDP 70
Query: 229 SFGFDTAVEEAQRAINAAHVEAESIENGIGVV 260
G E+ + + AAH + GI V+
Sbjct: 71 RLG---TEEDFKELVKAAH------KRGIKVI 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,411,735
Number of extensions: 2439756
Number of successful extensions: 2564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2479
Number of HSP's successfully gapped: 54
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)