RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012056
(472 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 566 bits (1461), Expect = 0.0
Identities = 165/461 (35%), Positives = 245/461 (53%), Gaps = 26/461 (5%)
Query: 1 MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLP--TYPNPLQFNAAYSVVKQYFVNVDD 58
+ + K+V +L V + LP YPNP + ++ F + D
Sbjct: 3 VESRSRVTSKLVKAH-RAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTD 57
Query: 59 TVSQKIVV-------HKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIR 111
+ + S A R +++F E IVTCGG+CPGLN VIR
Sbjct: 58 YIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIR 117
Query: 112 EIVCGLYHMYGVSKILGIDGGYRGFY---SKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168
I ++Y V +++G GY G S+ I L V +IH GGTILG+SRG D
Sbjct: 118 SITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQD 177
Query: 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDK 228
++VD+++ G+N ++ +GGDGTQ+GA VI +E ++RG+ ++V G+PKTIDND+ +
Sbjct: 178 PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHR 237
Query: 229 SFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPE 288
+FGF TAVE+A +AI AA+ EA S G+GVVKLMGR GFIA A + S + CL+PE
Sbjct: 238 TFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPE 297
Query: 289 SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVG 348
+P + + +E+R + VI++AEG GQD S DASGNK L D+G
Sbjct: 298 NPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRGS----GGYDASGNKKLIDIG 350
Query: 349 LWISHKIKDHFARLH--KMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY 406
+ ++ K+K +KYIDP+YMIRA P +A+D ++C LA AVH A+AG
Sbjct: 351 VILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGA 410
Query: 407 TGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSST 447
TG + + + +P + + + ++W +V T
Sbjct: 411 TGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREIT 451
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 321 bits (823), Expect = e-104
Identities = 98/480 (20%), Positives = 161/480 (33%), Gaps = 100/480 (20%)
Query: 28 DYIPDLPT------------YPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTH 75
YIP LP Y + +K++F N T I+ +
Sbjct: 12 KYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKN---TYGLPIISFTEGESSLS 68
Query: 76 FRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRG 135
F S ++ I+ GG PG + VI + + SK+ G GG G
Sbjct: 69 F------------SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLG 116
Query: 136 FYSKNTINLTPKVVNDIHKRGGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGD 190
+ I LT ++N GG + +S +K + ++ +N + IIGGD
Sbjct: 117 LLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGD 176
Query: 191 GTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHV 248
+ AA++ E ++ G + V G+PKTID D+ I+ SFGFD+A + I
Sbjct: 177 DSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCR 236
Query: 249 EAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGG-----LYEFI 303
+A S + VKLMGR +A+ L + + C++ E + + I
Sbjct: 237 DAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDEMVSVI 295
Query: 304 EKRLKE-NGHMVIVIAEG--------------------------------AGQDLLAESL 330
KR + V+++ EG +++ L
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355
Query: 331 QSMNQQ--------------------DASGNKLLQDVGL--WISHKIKDHFARLHKMAIN 368
+ D GN + V I+ + K
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415
Query: 369 LKYIDP-----TYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPF 423
P Y R+ + D+ YC L +AV + G TG+ N +
Sbjct: 416 KGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDW 475
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 186 bits (474), Expect = 3e-55
Identities = 99/352 (28%), Positives = 151/352 (42%), Gaps = 65/352 (18%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N +R +V +YH V ++ GI GY G S L V DI
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIYH--DV-EVYGIYNGYAGLISGKIEKLELGSVGDIIH 62
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT L T+R + K + +++ GI + +IGGDG+ GA + E G
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----GFP 118
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 119 CV--GVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAE 328
IA++A L + LIPE+ + + + +++ + H +I++AEG G
Sbjct: 176 IALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVG------ 225
Query: 329 SLQSMNQQDASGNKLLQDVGLWISHKIKDHF---ARLHKMAINLKYI----DPTYMIRAI 381
G+ +I++ R L +I P+
Sbjct: 226 ------------------SGVEFGKRIEEETNLETR----VSVLGHIQRGGSPS------ 257
Query: 382 PSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQV 433
A+D V + L AV + G G VG N + I E ++ V
Sbjct: 258 ---AADRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTV 306
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 184 bits (471), Expect = 8e-55
Identities = 90/343 (26%), Positives = 143/343 (41%), Gaps = 65/343 (18%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V L G+ +++GI GY G Y + L V+D+
Sbjct: 7 VLTSGGDAPGMNAAIRGVVRSALTE--GL-EVMGIYDGYLGLYEDRMVQLDRYSVSDMIN 63
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT LG++R +++++ RGI+ + +IGGDG+ GA + E G
Sbjct: 64 RGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM----GFP 119
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDI D + GF TA+ AI+ + S + I VV++MGRYCG
Sbjct: 120 CI--GLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQR-ISVVEVMGRYCGD 176
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAE 328
+ + A + + ++PE F E L I+ + + H ++ I E
Sbjct: 177 LTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMCD----- 227
Query: 329 SLQSMNQQDASGNKLLQDVGLWISHKIKDHF---ARLHKMAINLKYI----DPTYMIRAI 381
++H I+ R A L +I P
Sbjct: 228 -------------------VDELAHFIEKETGRETR----ATVLGHIQRGGSPV------ 258
Query: 382 PSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFN 424
D + + + A+ +AGY G VG N + +
Sbjct: 259 ---PYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDII 298
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 182 bits (465), Expect = 5e-54
Identities = 90/364 (24%), Positives = 145/364 (39%), Gaps = 65/364 (17%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
I+T GG PG+N +R + + + G+ ++ GI G+ G + + L + V +
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIAN--GL-EVFGIRYGFAGLVAGDIFPLESEDVAHLIN 62
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
GT L ++R ++ ++ GI+ V +IGGDG+ GA + G
Sbjct: 63 VSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH----GFN 118
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + G+DTA A AI+ A S + +V +MGR CG
Sbjct: 119 SI--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHR-VFIVNVMGRNCGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAE 328
IAM + D +IPE P+ +E + +++ + H ++V+AEG
Sbjct: 176 IAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVM------ 225
Query: 329 SLQSMNQQDASGNKLLQDVGLWISHKIKDHF---ARLHKMAINLKYI----DPTYMIRAI 381
++K + R A L ++ PT
Sbjct: 226 ------------------TADQFMAELKKYGDFDVR----ANVLGHMQRGGTPT------ 257
Query: 382 PSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWA 441
SD V + L AVH + G G VG NG+ + + ++
Sbjct: 258 ---VSDRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYDLLKLN 314
Query: 442 RVLS 445
LS
Sbjct: 315 ADLS 318
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 180 bits (459), Expect = 3e-52
Identities = 66/341 (19%), Positives = 127/341 (37%), Gaps = 37/341 (10%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
GG+ +N ++ + +I G G +++ I+ + I
Sbjct: 8 YAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISA 67
Query: 155 ---RGGTILGTSR--------GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
G+ R + ++++ + I + GG + + +
Sbjct: 68 LRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLS 127
Query: 204 RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIE---NGIGVV 260
G + +PKT+DND+P+ D GF + + + A + S+ + V+
Sbjct: 128 GTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVL 187
Query: 261 KLMGRYCGFIAMYATLGSRD----VDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIV 316
++MGR+ G+IA L S L PE F + ++ +K+ G+ +V
Sbjct: 188 EVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFGYCSVV 244
Query: 317 IAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKY--IDP 374
++EG + + L +DA G+ L V ++ +K+ + LKY
Sbjct: 245 VSEGV-KGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEG--------LGLKYHWGVA 295
Query: 375 TYMIRA---IPSNASDNVYCTLLAQSAVHGAVAGYTGFTVG 412
Y+ RA I S +D + Q+AV AV G+
Sbjct: 296 DYLQRAARHIAS-KTDVEQAYAMGQAAVEFAVQGHNSVMPT 335
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 181 bits (461), Expect = 5e-50
Identities = 65/365 (17%), Positives = 118/365 (32%), Gaps = 57/365 (15%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN-LTPKVVNDIH 153
IV G G+N+ + + + G + I G+ G ++ L K +
Sbjct: 398 IVNVGAPAGGINSAVYSMATYCMSQ--GH-RPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 154 KRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLK 209
RGG+ +GT+R D I Q + + I+GG + + +
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFR 514
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ + IP T+ N++P + S G DTA+ + A S VV G G+
Sbjct: 515 IPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGY 574
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-----GHMVIVIAEGAGQD 324
+A YA+L +PE LE E++ + ++ +I+ + A +
Sbjct: 575 LATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKA 633
Query: 325 LLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHF-ARLHKMAINLKYI----DPTYMIR 379
L A L + I+ + F A+ ++ P+
Sbjct: 634 LSATKLAEV-----------------ITAEADGRFDAK----PAYPGHVQQGGLPS---- 668
Query: 380 AIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINE-------RQNQ 432
D T +A AV + I++ + +
Sbjct: 669 -----PIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSH 723
Query: 433 VVITD 437
VV
Sbjct: 724 VVYNS 728
Score = 156 bits (396), Expect = 2e-41
Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN---LTPKVVND 151
++T GG PG+N+ +R IV ++ G + + GY G + V
Sbjct: 8 VMTSGGDAPGMNSNVRAIVRSAIFK--GC-RAFVVMEGYEGLVRGGPEYIKEFHWEDVRG 64
Query: 152 IHKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE---- 202
GGT +GT+R + + G++ + + GGDG+ GA + E
Sbjct: 65 WSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 203 -------------IRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249
+R + + G +IDND+ D + G +A++ +AI+
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEAT 184
Query: 250 AESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 309
A S VV++MGR CG++A+ A + + D IPE P + + + +
Sbjct: 185 ANSHSR-AFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPA---TSSEWQDQMCDIVSK 239
Query: 310 N-----GHMVIVIAEGAG 322
+ ++V+AEGA
Sbjct: 240 HRSRGKRTTIVVVAEGAI 257
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 178 bits (453), Expect = 4e-49
Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 9/250 (3%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++ G G+N +R V GL G ++L + G+ G V
Sbjct: 405 VMNVGAPAAGMNAAVRSTVRIGLIQ--GN-RVLVVHDGFEGPAKGQIEEAGWSYVGGWTG 461
Query: 155 RGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVA 211
+GG+ LG+ R +I +I I + IIGG G + E +Q L +
Sbjct: 462 QGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIP 521
Query: 212 VAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIA 271
IP T+ N++P D S G DTA+ + A + + +++ MG YCG++A
Sbjct: 522 FVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLA 581
Query: 272 MYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDLLAESL 330
A L + D I E PF + E + +++K +++ E ++ + +
Sbjct: 582 TMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNENYTTDFI 640
Query: 331 QSMNQQDASG 340
++ ++ G
Sbjct: 641 FNLYSEEGKG 650
Score = 164 bits (418), Expect = 3e-44
Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 33/254 (12%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG G+N +R +V G++ G ++ + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVVRVGIFT--GA-RVFFVHEGYQGLVDGGDHIREATWESVSMM 76
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
+ GGT++G++R + ++ RGI + +IGGDG+ GA E
Sbjct: 77 LQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLL 136
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
R + + G+ +IDND D + G D+A+ ++A A
Sbjct: 137 SDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTA 196
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310
+S + V+++MGR+CG++A+ +L D IPE P E L + + +
Sbjct: 197 QSHQR-TFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSET-RTR 253
Query: 311 G--HMVIVIAEGAG 322
G +I++AEGA
Sbjct: 254 GSRLNIIIVAEGAI 267
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 177 bits (451), Expect = 2e-48
Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 14/256 (5%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPKVVNDIH 153
I+ G LN R L G ++ I G+ G + L V D H
Sbjct: 603 IIHVGAPTSALNPATRVATLNSLAK--GH-RVFAIRNGFAGLIRHGAVRELNWIDVEDWH 659
Query: 154 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLKV 210
GG+ +GT+R D + Q + + IIGG + + +
Sbjct: 660 NTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNI 719
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
+ +P T+ N++P + S G DT + +A A + VV++ G Y G++
Sbjct: 720 PMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYL 779
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-----HMVIVIAEGAGQDL 325
A YA L + PE+P L+ E + + +E+ + + E A +
Sbjct: 780 ASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVY 838
Query: 326 LAESLQSMNQQDASGN 341
+ + ++ + G
Sbjct: 839 TTDLIAAIIGEAGKGR 854
Score = 159 bits (403), Expect = 4e-42
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 38/257 (14%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT--INLTPKVVNDI 152
I+T GG PG+N +R + G+++ G K+ GY G L + V +
Sbjct: 215 IITSGGDAPGMNAAVRAVTRAGIFY--GC-KVYACYEGYTGLVKGGDMLKELQWQDVRGL 271
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
GGTI+GT+R + ++ GI+ + + GGDG+ GA + +E
Sbjct: 272 LSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELI 331
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+ + + G+ +IDND+ D + G +++E ++ A
Sbjct: 332 KELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATA 391
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310
S VV++MGR+CG++ + + + + D IPE P E + ++K +
Sbjct: 392 ASHSR-AFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPP---SESNWKDDLKKVCLRH 446
Query: 311 -----GHMVIVIAEGAG 322
+++AEGA
Sbjct: 447 REKGRRKTTVIVAEGAI 463
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 175 bits (447), Expect = 4e-48
Identities = 50/255 (19%), Positives = 93/255 (36%), Gaps = 14/255 (5%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIH 153
IV G LN R L H + K I G+ G + L+ V + H
Sbjct: 398 IVHVGAPSAALNAATRAATLYCLSHGH---KPYAIMNGFSGLIQTGEVKELSWIDVENWH 454
Query: 154 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLKV 210
GG+ +GT+R D I Q ++ + I+GG + + + + +
Sbjct: 455 NLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNI 514
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
+ IP T+ N++P + S G DT + + A + + V ++ G + G+I
Sbjct: 515 PMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGGHSGYI 574
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENG-----HMVIVIAEGAGQDL 325
A + L + PE L +++ + + ++V E A
Sbjct: 575 ASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGKLLVRNEQASSVY 633
Query: 326 LAESLQSMNQQDASG 340
+ L + + + G
Sbjct: 634 STQLLADIISEASKG 648
Score = 158 bits (401), Expect = 5e-42
Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 38/257 (14%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT--INLTPKVVNDI 152
++T GG PG+N +R +V G++ G + + GY G + + V
Sbjct: 10 VMTSGGDSPGMNAAVRAVVRTGIHF--GC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
GGT++GT+R + ++ +GI+ + + GGDG+ GA + E
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+++ G+ +IDND+ D + G +A+E ++ A
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310
+S VV++MGR+CG++A+ A + + D IPE G + +++ + +
Sbjct: 187 KSHSR-AFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAV---PHGKWQDELKEVCQRH 241
Query: 311 -----GHMVIVIAEGAG 322
+ I++AEGA
Sbjct: 242 RSKGRRNNTIIVAEGAL 258
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 172 bits (439), Expect = 7e-47
Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 15/256 (5%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN-LTPKVVNDIH 153
I+ G G+N+ + + + + I G+ G ++ + +
Sbjct: 576 IINVGAPAGGMNSAVYSMATYCMSRGH---VPYAIHNGFSGLARHESVRSINWLDIEGWG 632
Query: 154 KRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLK 209
GG+ +GT+R D I + G + + ++GG + I L+
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLR 692
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ + IP TI N++P + S G DT + + A + N + VV++ G G+
Sbjct: 693 IPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGY 752
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-----GHMVIVIAEGAGQD 324
IA +A L +PE L +++ + +I+ +E A +
Sbjct: 753 IATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENASKV 811
Query: 325 LLAESLQSMNQQDASG 340
L E + ++ +ASG
Sbjct: 812 LTTEVISTIIDDEASG 827
Score = 161 bits (408), Expect = 9e-43
Identities = 67/306 (21%), Positives = 115/306 (37%), Gaps = 48/306 (15%)
Query: 56 VDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHAC---------IVTCGGLCPGL 106
+ + + + +K Y D+ ++T GG PG+
Sbjct: 137 LGSLIGFSGFKNPFAVNERSLLPKVSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGM 196
Query: 107 NTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT---INLTPKVVNDIHKRGGTILGT 162
N +R +V G+Y G K+ I GY G V GGT +GT
Sbjct: 197 NPFVRAVVRAGIYK--GC-KVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGT 253
Query: 163 SRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI-------------- 203
+R K ++ D GI+ + + GGDG+ GA E
Sbjct: 254 ARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQIS 313
Query: 204 ---RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVV 260
+ + G +IDND+ D + G ++++ RAI+ A S +V
Sbjct: 314 QQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSR-AFIV 372
Query: 261 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-----GHMVI 315
++MGR+CG++ + A L + D LIPE P + + + ++ ++
Sbjct: 373 EVMGRHCGWLGLLAGLAT-SADYILIPEKPA---SSREWQDQMCDIVGKHRARGKRKTIV 428
Query: 316 VIAEGA 321
++AEGA
Sbjct: 429 IVAEGA 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 3e-09
Identities = 52/297 (17%), Positives = 89/297 (29%), Gaps = 90/297 (30%)
Query: 109 VIREIV----CGLYHMYGVSKILGID-----------GGYRGFY-SKNTINLTPKVVNDI 152
+++ YG S IL I GG +G +N + + + D
Sbjct: 1641 AAQDVWNRADNHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD- 1698
Query: 153 HKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG--------TQKGAAV------ 198
G T KI I + + Y + TQ A+
Sbjct: 1699 ------------GKLKTEKIFKEINEHSTS--YTFRSEKGLLSATQFTQ--PALTLMEKA 1742
Query: 199 IYEEIRQRGLKV---AVAGIPKTIDNDIPVIDKSFG-FDTAVEEAQRAINAAHVEAESIE 254
+E+++ +GL AG S G + A+ A+ + SIE
Sbjct: 1743 AFEDLKSKGLIPADATFAG-------------HSLGEY-AAL--------ASLADVMSIE 1780
Query: 255 NGIGVVKLMGRYCGFIAMYATLGSRDVDCCLI-PESPFYLEGEGGLYEFIEKRLKENGHM 313
+ + VV G LG + I P + L +E+ K G +
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 314 V-----------IVIA-EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDH 358
V V A + D + L + Q +L + + L +++ H
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL---EEVEGH 1894
Score = 43.9 bits (103), Expect = 1e-04
Identities = 51/314 (16%), Positives = 89/314 (28%), Gaps = 119/314 (37%)
Query: 145 TPKVVNDIHKRG----GTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200
T K D+ R G S I+D + + +N GG+ ++
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFS--------ILDIVINNPVNLTIHFGGEKGKR------ 1683
Query: 201 EEIRQRGLKVAVAGIP------KTIDNDIPVIDKSFGFDTAVEE------AQRAINAAHV 248
IR+ + I + I +I S+ F + Q A+
Sbjct: 1684 --IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 249 EAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFY----LEGEGGLYEFIE 304
A + L S+ LIP + L GE Y
Sbjct: 1742 ----------------------AAFEDLKSKG----LIPADATFAGHSL-GE---Y---- 1767
Query: 305 KRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKI-KDHFARLH 363
A L + + M+ + +++ G+ + + +D R +
Sbjct: 1768 ---------------AA---LASLA-DVMSIESLV--EVVFYRGMTMQVAVPRDELGRSN 1806
Query: 364 K--MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYI 421
+AIN P + + A V + + TG+ V VN
Sbjct: 1807 YGMIAIN-----PGRVAASFSQEALQYV-VERVGKR---------TGWLVEIVN------ 1845
Query: 422 PFNRINERQNQVVI 435
+N N+ Q V
Sbjct: 1846 -YNVENQ---QYVA 1855
Score = 43.1 bits (101), Expect = 2e-04
Identities = 70/425 (16%), Positives = 116/425 (27%), Gaps = 158/425 (37%)
Query: 28 DYIPDL----PTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS----PRGTHFRR- 78
DY +L TY +V +T+S+ I D+ +G +
Sbjct: 168 DYFEELRDLYQTYH---------VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 79 -AGPRQK---VYFVSDEVHAC-----------IVTC--GGLCPGLNTVIREIVCGL-YHM 120
P Y +S + +C +VT G PG +R + G H
Sbjct: 219 LENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHS 274
Query: 121 YGV-------------------SKILG----IDGGYRGFYSKNTINLTPKVVNDIHKRG- 156
G+ K + I G R + + +L P ++ D +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 157 GT------ILGTSRGGHDTSKIVDSIQDRG----------IN--QVYIIGGDGTQKGAAV 198
G I ++ V+ +N + ++ G
Sbjct: 333 GVPSPMLSISNLTQE--QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP-----PQS 385
Query: 199 IYEEIRQRGLKVAVAGI--PKTID-NDIP------VIDKSFGFDTA------VEEAQRAI 243
+Y GL + + P +D + IP F + + A I
Sbjct: 386 LY------GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 244 NAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRD------------VDCCLIPESPF 291
N + ++ + I +Y T D VDC I P
Sbjct: 440 NK-DLVKNNVS--FNAKDIQ------IPVYDTFDGSDLRVLSGSISERIVDC--IIRLPV 488
Query: 292 YLE-------------GEGGLYEFIEKRLKENGHMVIVIAEGAGQDL-LAESLQSMNQQD 337
E G GG L G + +G G + +A +L N D
Sbjct: 489 KWETTTQFKATHILDFGPGGA-----SGL---GVLTHRNKDGTGVRVIVAGTLDI-NPDD 539
Query: 338 ASGNK 342
G K
Sbjct: 540 DYGFK 544
Score = 42.0 bits (98), Expect = 4e-04
Identities = 76/471 (16%), Positives = 125/471 (26%), Gaps = 187/471 (39%)
Query: 37 PNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRG-----THFRRAGPRQKVYFVSDE 91
P F A S +++ F + ++ D P F + +VS
Sbjct: 23 PTASFFIA--SQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGKF--------LGYVSSL 71
Query: 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND 151
V G LN + E + L G ND
Sbjct: 72 VEP--SKVGQFDQVLNLCLTEFE---------NCYL------EG--------------ND 100
Query: 152 IHKRGGTILGTSRGG------------------------HDTSKIVDSIQDRGINQVYII 187
IH +L + S + ++ + G Q+ I
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAI 159
Query: 188 -GGDGTQKGAAVIY-EEIRQ---------RGLKVAVAGIPKTIDNDIPVIDKSF--GFD- 233
GG Q G Y EE+R L A + +K F G +
Sbjct: 160 FGG---Q-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 234 -TAVEEAQRA-----INAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIP 287
+E + + + S IGV++L Y V L+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPI---SC-PLIGVIQL-AHYV-------------VTAKLLG 257
Query: 288 ESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLL-------AESLQSMNQQDASG 340
+P GE + LK G A G Q L+ +S +S
Sbjct: 258 FTP----GE------LRSYLK--G------ATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 341 NKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 400
+L +I R ++ Y ++P ++L S +
Sbjct: 300 ITVL----FFIG-------VRCYE----------AYPNTSLPP--------SILEDSLEN 330
Query: 401 G--------AVAGYTGFTVGP----VN-----GRHAYIPFNRINERQNQVV 434
+++ T V N G+ I + +N +N VV
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLVV 379
Score = 35.8 bits (82), Expect = 0.037
Identities = 49/301 (16%), Positives = 93/301 (30%), Gaps = 111/301 (36%)
Query: 232 FDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMY---ATLGSRDVDCCLIPE 288
F+ + E AA E + +L+G++ G+++ + +G D L
Sbjct: 37 FNKILPEPTEGF-AADDEPTT------PAELVGKFLGYVSSLVEPSKVGQFDQ--VL--- 84
Query: 289 SPFYLEGEGGLYEFIEKRLKENG-HMVIV-------IAEGAGQDLL-------------- 326
L EF L+ N H + ++L+
Sbjct: 85 -------NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 327 ---AES--LQSMNQQDAS--------GNKL-----LQDVGLWISHK------IKDHFARL 362
+ S +++ + +A GN L+D L+ ++ IK L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETL 195
Query: 363 HKMAINLKYIDPTY-----MIRAI--PSNASDNVY-------CTL--LAQSAVHGAVAGY 406
++ + + ++ + PSN D Y C L + Q H V
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAK 254
Query: 407 T-GFTVGPVNGR------HAYIPFNRINERQNQVVITDRMWARVLS-STNQPSFLSANEL 458
GFT G + H+ Q ++T A ++ + + SF +
Sbjct: 255 LLGFTPGELRSYLKGATGHS------------QGLVT----AVAIAETDSWESFFVSVRK 298
Query: 459 A 459
A
Sbjct: 299 A 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 7e-05
Identities = 61/528 (11%), Positives = 139/528 (26%), Gaps = 156/528 (29%)
Query: 11 VVNGDAGYVLEDVPHLTDYIPDLPT-----YPNPLQFNAAYSVVKQYFVNVDDTV----- 60
V+ + +++ + P + T + L +N V +Y V+
Sbjct: 86 VLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRL-YNDN-QVFAKYNVSRLQPYLKLRQ 142
Query: 61 -------SQKIVVH---------------KDSPRGTHFRRAGPRQKVYFVSDEVHACIVT 98
++ +++ K+++++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KIFWLN--------- 188
Query: 99 CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-------------- 144
C TV+ E++ L + + D ++I
Sbjct: 189 -LKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 145 --------TPKVVN--DIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIG-GDGTQ 193
K N ++ + IL T+R + D + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCK---ILLTTR---FKQ-VTDFLSAATTTHISLDHHSMTLT 299
Query: 194 KGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVEAE 251
+ + + L +P+ + P + N HV +
Sbjct: 300 PDEV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCD 353
Query: 252 SIENGIGVVKLMGRYCGFI---------AMYATLG--SRDVDCCLIPESPFYLEGEGGLY 300
+ I + M+ L IP L
Sbjct: 354 KLTTIIES---------SLNVLEPAEYRKMFDRLSVFPPSAH---IPTI---------LL 392
Query: 301 EFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFA 360
I + ++ MV+V L SL + +Q + + L + K+++ +A
Sbjct: 393 SLIWFDVIKSDVMVVV------NKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 361 RLHKMAINLKYIDP-TYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTG----FTVGPVN 415
LH+ ++ Y P T+ + D + + + H + F
Sbjct: 445 -LHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLF------ 493
Query: 416 GRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKR 463
R ++ F + + ++ W S N + +L +K
Sbjct: 494 -RMVFLDFRFL---EQKIRHDSTAWNASGSILN-----TLQQLKFYKP 532
Score = 41.0 bits (95), Expect = 8e-04
Identities = 34/251 (13%), Positives = 66/251 (26%), Gaps = 74/251 (29%)
Query: 144 LTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
L+ + ++ I + GT R + ++ + V + + + I
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 204 RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLM 263
+ S +E+ R N V
Sbjct: 99 KTE------------------QRQPSMMTRMYIEQRDRLYNDNQV--------------- 125
Query: 264 GRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAG- 322
F + YL+ L E L+ +++I G+G
Sbjct: 126 -----FAKYN------------VSRLQPYLKLRQALLE-----LRPAKNVLIDGVLGSGK 163
Query: 323 QDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKY-IDPTYMIRA- 380
+ + S Q K+ W++ K + + +M L Y IDP + R+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 381 ----IPSNASD 387
I
Sbjct: 219 HSSNIKLRIHS 229
Score = 35.2 bits (80), Expect = 0.060
Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 92/246 (37%)
Query: 279 RDVDCCLIPESP-------------------------FYL---EGEGGLYEFIEKRLKEN 310
+ DC + + P F+ + E + +F+E+ L+ N
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 311 GHMVIVIAEGAGQDLLAESLQSMNQQDASG--------NKLLQDVGLWISHKI--KDHFA 360
L +++ +Q + ++L D ++ + + +
Sbjct: 91 ------------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 361 RLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHG---------AVAGYTGFTV 411
+L + + L+ P + NV + G A+ + V
Sbjct: 139 KLRQALLELR---P-----------AKNV--------LIDGVLGSGKTWVALDVCLSYKV 176
Query: 412 GPVNGRHAY-IPFNRINERQNQVVITDRMWARVLSSTNQPSFLSAN----------ELAK 460
+ + N + + + ++ ++ + S S+N EL +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 461 FKREKP 466
+ KP
Sbjct: 237 LLKSKP 242
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.52
Identities = 31/226 (13%), Positives = 60/226 (26%), Gaps = 38/226 (16%)
Query: 154 KRGGTILGTSRGGH---DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
K G I G D +GI + + + + R+R L
Sbjct: 1196 KMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVT 1255
Query: 211 AVAGIPKTIDNDIPVIDK---SFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYC 267
A I ++N++ + + E + E+ + G
Sbjct: 1256 REAQIKDWVENELEALKLEAEEIPSEDQNEFL--LERTREIHNEAESQLRAAQQQWGNDF 1313
Query: 268 G-----FIAMYATLGSRDVDCCLIPESPFYLEGEG---GLYEFIE----KRL-----KEN 310
+ L L + G + E + +
Sbjct: 1314 YKRDPRIAPLRGALA----TYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSE 1369
Query: 311 GHMVIVIAE---------GAGQDLLAESLQSMNQQDASGNKLLQDV 347
G+ VI + + AG ++ +LQ +N GN+ +V
Sbjct: 1370 GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNV 1415
Score = 28.3 bits (63), Expect = 7.1
Identities = 28/196 (14%), Positives = 47/196 (23%), Gaps = 65/196 (33%)
Query: 165 GGHDTSKIVDSI-QDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG---IPKTID 220
G D ++ + G G G + + + R V I
Sbjct: 1028 GITDPYEMYKYVHVSEVG--NCSGSGMG---GVSALRGMFKDRFKDEPVQNDILQESFI- 1081
Query: 221 NDIP--VIDKSFGFD-------TA-------VEEAQRAINA--AHV------EAESIENG 256
N + V A V+ I + A + + E G
Sbjct: 1082 NTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEG 1140
Query: 257 IGVVKLMGRYCGFIAMYATLGSRD-VDCCLIPES---PFYLEGEGGLYEFIEKRLKENGH 312
F M AT + + + P P G F
Sbjct: 1141 SF---------EFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNG----F---------- 1177
Query: 313 MVIVIAEGAGQDLLAE 328
+ A+GAG ++ +
Sbjct: 1178 ---MEAQGAGIQIIMQ 1190
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 29.2 bits (65), Expect = 2.4
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 313 MVIVIA--EGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLK 370
+V++ + +G+D + E+LQS D L +S +K+ +A+ H +
Sbjct: 12 LVLLFSGKRKSGKDFVTEALQSRLGADVC-------AVLRLSGPLKEQYAQEHGLNFQRL 64
Query: 371 YIDPTY 376
TY
Sbjct: 65 LDTSTY 70
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA
complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4}
SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Length = 259
Score = 28.8 bits (65), Expect = 3.7
Identities = 5/52 (9%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 197 AVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF-GFDTAVEEAQRAINAAH 247
+ + + RG+K ++ + + + ++ + ++ + N H
Sbjct: 194 LNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYH 245
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen
III synthase, HMB, lyase; 2.50A {Pseudomonas syringae
PV}
Length = 269
Score = 28.5 bits (64), Expect = 4.1
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 303 IEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQ 336
+ + G ++ GA L +L+ Q
Sbjct: 231 VASLAQAAGARNVIDCRGASAAALLAALRDQPQP 264
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.4 bits (63), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 233 DTAVEEAQRA--INAAHVEAES 252
D A EE R IN +HVE ++
Sbjct: 335 DNAPEEKARGITINTSHVEYDT 356
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 28.1 bits (63), Expect = 7.5
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 146 PKVVNDIHKRGG--TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGT 192
P + + K G + T + G T + + + GGDGT
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGT 92
>1rwh_A Chondroitin AC lyase; chondroitinase, chondroitin lyase; HET: ASG
GCT GAD; 1.25A {Arthrobacter aurescens} SCOP: a.102.3.2
b.24.1.1 b.30.5.2 PDB: 1rwc_A* 1rwf_A* 1rwg_A* 1rwa_A*
1rw9_A
Length = 757
Score = 28.2 bits (62), Expect = 7.8
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 327 AESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAI 367
A+SL ++ A + D+ L ++ + RL ++A
Sbjct: 45 ADSLAKLDA-AAGRTSVFTDLSLAKDAEMVTTYTRLSQLAT 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,445,825
Number of extensions: 477977
Number of successful extensions: 1435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1335
Number of HSP's successfully gapped: 51
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)