RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012056
(472 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 221 bits (564), Expect = 1e-66
Identities = 86/402 (21%), Positives = 141/402 (35%), Gaps = 73/402 (18%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
I+ GG PG + VI + + SK+ G GG G + I LT ++N
Sbjct: 74 IILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNT 133
Query: 156 GGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GG + +S +K + ++ +N + IIGGD + AA++ E ++ G +
Sbjct: 134 GGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENI 193
Query: 211 AVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
V G+PKTID D+ I+ SFGFD+A + I +A S + VKLMGR
Sbjct: 194 QVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSAS 253
Query: 269 FIAMYATLGSRDVDCCL------------------------------------IPESPFY 292
+A+ L + C + +PE
Sbjct: 254 HVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIE 313
Query: 293 LEGE-GGLYEFIEKRLKENGHMVIVIAEGAGQDLLA--------------------ESLQ 331
E L + +N + +++ E ++
Sbjct: 314 FIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIK 373
Query: 332 SMNQQDASGNKLLQDV--GLWISHKIKDHFARLHKMAINLKYIDP-----TYMIRAIPSN 384
S+ ++D GN + V I+ + K P Y R+ +
Sbjct: 374 SILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPS 433
Query: 385 ASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRI 426
D+ YC L +AV + G TG+ N P + I
Sbjct: 434 NFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLN--LKPTDWI 473
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 188 bits (478), Expect = 1e-56
Identities = 84/353 (23%), Positives = 137/353 (38%), Gaps = 49/353 (13%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V + +++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 156 GGTILGTSRGGHDTSK-----IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGT LG++R + +++++ RGI+ + +IGGDG+ GA + E
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFP----- 119
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
G+P TIDNDI D + GF TA+ AI+ + S I VV++MGRYCG +
Sbjct: 120 -CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS-HQRISVVEVMGRYCGDL 177
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESL 330
+ A + C + E + E K H ++ I E
Sbjct: 178 TLAAAI---AGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEH---------- 224
Query: 331 QSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVY 390
M D + + ++ G + ++ R D +
Sbjct: 225 --MCDVDELAHFIEKETG------------------RETRATVLGHIQRGGSPVPYDRIL 264
Query: 391 CTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARV 443
+ + A+ +AGY G VG N + + E + W
Sbjct: 265 ASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPF--KGDWLDC 315
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 183 bits (465), Expect = 1e-54
Identities = 88/357 (24%), Positives = 142/357 (39%), Gaps = 51/357 (14%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V +Y ++ G+ GY G + N L V DI R
Sbjct: 6 VLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 156 GGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP----- 118
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
G+P TIDNDIP D + GFDTA+ AI+ + + V+++MGR+ G I
Sbjct: 119 -CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGRHAGDI 176
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESL 330
A+++ L + LIPE+ + + + H +I++AEG
Sbjct: 177 ALWSGLAG-GAETILIPEADYDMNDVIA--RLKRGHERGKKHSIIIVAEG---------- 223
Query: 331 QSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVY 390
+ + + ++ R A D V
Sbjct: 224 --------------------VGSGVDFGRQIQEATGFETRVTVLGHVQRGGSPTAFDRVL 263
Query: 391 CTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMW--ARVLS 445
+ L AV + G G VG N + ++ + RM+ ++ LS
Sbjct: 264 ASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTI--DQRMYALSKELS 318
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 31.9 bits (71), Expect = 0.16
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 9/149 (6%)
Query: 146 PKVVNDIHKRGG--TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
P + + K G + T + G T + + + GGDGT E
Sbjct: 23 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 81
Query: 204 RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLM 263
R + IP ND ++ + A I H I +
Sbjct: 82 PNR---PKLGVIPMGTVNDFG---RALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFIN 135
Query: 264 GRYCGFIAMYATLGSRDVDCCLIPESPFY 292
G + + + + P + +
Sbjct: 136 LAAGGQLTQVSYETPSKLKSIVGPFAYYI 164
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator
CcpA, C-terminal domain {Bacillus megaterium [TaxId:
1404]}
Length = 275
Score = 30.5 bits (67), Expect = 0.42
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 12/109 (11%)
Query: 285 LIPE--SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNK 342
+IP+ + FY E L IE + +I+ QD L +M + G
Sbjct: 9 IIPDISNIFYAE----LARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDG-- 62
Query: 343 LLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYC 391
+ + ++H L K + + IPS D
Sbjct: 63 ----IIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQA 107
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 29.7 bits (65), Expect = 0.65
Identities = 10/113 (8%), Positives = 27/113 (23%), Gaps = 16/113 (14%)
Query: 285 LIPE--SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNK 342
++ S + + E G+ I++ L+AE L + +++
Sbjct: 8 IVTRLDSLSENL----AVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNID--- 60
Query: 343 LLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLA 395
+ + + S D+ +
Sbjct: 61 -------GVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDEGAIKIL 106
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 26.6 bits (59), Expect = 2.1
Identities = 5/34 (14%), Positives = 17/34 (50%)
Query: 323 QDLLAESLQSMNQQDASGNKLLQDVGLWISHKIK 356
D+L + +++ K L+++ W++ ++
Sbjct: 58 ADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 91
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli,
strain k-12 [TaxId: 562]}
Length = 271
Score = 27.8 bits (60), Expect = 2.7
Identities = 10/129 (7%), Positives = 35/129 (27%), Gaps = 9/129 (6%)
Query: 285 LIPE--SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNK 342
++ +PF++ L + +K + G+ ++V+ ++Q + +
Sbjct: 7 VVSTLNNPFFVS----LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 62
Query: 343 LLQDVGLWIS---HKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAV 399
+ + + + + I + + ++
Sbjct: 63 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 122
Query: 400 HGAVAGYTG 408
V G
Sbjct: 123 GAKVIELQG 131
>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId:
29339]}
Length = 161
Score = 27.2 bits (60), Expect = 3.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 388 NVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIP 422
N+Y + +H A YTGFT+ P++
Sbjct: 1 NIYAANENGTMIHLAPEDYTGFTISPIHATQVNNQ 35
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 25.9 bits (57), Expect = 4.8
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 13/91 (14%)
Query: 3 HSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSV---------VKQYF 53
SG Q +V G + L + + L V
Sbjct: 6 QSGGKQHRVSEGQ----TVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKA 61
Query: 54 VNVDDTVSQKIVVHKDSPRGTHFRRAGPRQK 84
V +K+ + K R + ++ G RQ
Sbjct: 62 EVVAHGRGEKVKIVKFRRRKHYRKQQGHRQW 92
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 26.7 bits (59), Expect = 4.9
Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 30 IPDLPTYPNPLQFNAA-------------YSVVKQY-FVNVDDTVSQKIVVHKDSPRGTH 75
+P TY F YS F + T ++ V P GT
Sbjct: 2 VPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGT- 60
Query: 76 FRRAGPRQKVYFVSDEVHACIVTC 99
RA +Y S + + C
Sbjct: 61 RVRAMA---IYKQSQHMTEVVRRC 81
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 26.9 bits (58), Expect = 5.2
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 162 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216
T G + V+ + G+ V GGDGT + + + A+ +P
Sbjct: 36 TWEKGDAA-RYVEEARKFGVATVIAGGGDGTINEVSTALIQ-CEGDDIPALGILP 88
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli
[TaxId: 562]}
Length = 288
Score = 26.7 bits (57), Expect = 5.8
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 289 SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAES--LQSMNQQDASGNKLLQD 346
+PF+++ + + IE K G V + A + D ++ + ++ ++ G
Sbjct: 13 NPFWVD----MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKG----IA 64
Query: 347 VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYC 391
S + AR K I L +D + + +
Sbjct: 65 FAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAF 109
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 282
Score = 26.6 bits (57), Expect = 7.0
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 285 LIPE--SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQ 336
L + ++ E + E +EK + G+ +I+ + L M Q+
Sbjct: 6 LATSSEAAYFAE----IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQK 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0384 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,795,695
Number of extensions: 87166
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 20
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.9 bits)