BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012057
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 129/277 (46%), Gaps = 24/277 (8%)
Query: 159 KQW---LVFYKLDDMTFT--GKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRF 213
K+W L+ + D+T T I+G+G WWD +G NG + P +
Sbjct: 56 KEWKGPLIRFGGKDLTVTMADGAVIDGDGSRWWD-----SKGTNGGKTK-----PKFMYI 105
Query: 214 FMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPN----TDGIHIENTKSV 269
+ G+ I+N+P + V ++ +I + N TDG I + V
Sbjct: 106 HDVEDSTFKGINIKNTPVQAISVQATN-VHLNDFTIDNSDGDDNGGHNTDGFDISESTGV 164
Query: 270 GIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAII 329
I + + N DDCI+I +G S + TC HG+SIGS+G V N+T+ ++ +
Sbjct: 165 YISGATVKNQDDCIAINSGES-ISFTGGTCSGGHGLSIGSVGGR-DDNTVKNVTISDSTV 222
Query: 330 RESDNGLRIKTWQGGTGCVSDLSFENIQMENVRN-CINIDQYYCLSKECLNQTSAVFVTG 388
S NG+RIKT TG VS++++ NIQ+ + + I I+Q Y ++ + +T
Sbjct: 223 SNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGSPTGTPSTGIPITD 282
Query: 389 ITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVEL 425
+T + GT + ++ C D C+ T + V+L
Sbjct: 283 VTVDGVTGTLEDDATQVYILCGDG-SCSDWTWSGVDL 318
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 24/211 (11%)
Query: 174 GKGTIEGNGQ--------PWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLT 225
G GTI+G G WW+L + ++P LI+ S N + ++
Sbjct: 115 GPGTIDGQGGVKLQDKKVSWWELAA------DAKVKKLKQNTPRLIQINKSKNFTLYNVS 168
Query: 226 IQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISI 285
+ NSP FH+ F +G K +I +P + NTDGI ++K++ I S I+ GDD ++I
Sbjct: 169 LINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAI 228
Query: 286 GTGCSDVDIADVTC-----GPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKT 340
+ +++ G HG+SIGS V N+TV + + + NGLRIK+
Sbjct: 229 KAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKS 283
Query: 341 WQGGTGCVSDLSFENIQMENVRNCINIDQYY 371
+ G V+ + + N+ M+NV I ID Y
Sbjct: 284 DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 125/266 (46%), Gaps = 30/266 (11%)
Query: 159 KQW---LVFYKLDDMTFTGKG--TIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRF 213
K+W L+ + ++ G +I+ G WWD +G NG + P +F
Sbjct: 56 KEWEGPLISFSGTNININGASGHSIDCQGSRWWD-----SKGSNGGKTK-----P---KF 102
Query: 214 FMSSNLV---VSGLTIQNSPQFHMKFD-----GCEGVMIDKLSISSPKLSPNTDGIHIEN 265
F + +L + GL + N+P + G V+ID S NTD + +
Sbjct: 103 FYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDN-SAGDSAGGHNTDAFDVGS 161
Query: 266 TKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVR 325
+ V I + + N DDC++I +G +++ TC HG+SIGS+G S V +T+
Sbjct: 162 STGVYISGANVKNQDDCLAINSG-TNITFTGGTCSGGHGLSIGSVGGR-SDNTVKTVTIS 219
Query: 326 NAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENV-RNCINIDQYYCLSKECLNQTSAV 384
N+ I SDNG+RIKT G TG VS +++ I + N+ + I I+Q Y T+ V
Sbjct: 220 NSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGV 279
Query: 385 FVTGITYRNIKGTYDVRTPPIHFACS 410
+TG+T I G+ ++ C+
Sbjct: 280 PITGLTLSKITGSVASSGTNVYILCA 305
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 25/277 (9%)
Query: 159 KQW---LVFYKLDDMTFTGKG--TIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRF 213
K+W L+ D+T TG +I G+G WWD G NG + P
Sbjct: 60 KEWSGPLISVSGSDLTITGASGHSINGDGSRWWD-----GEGGNGGKTK-----PKFFAA 109
Query: 214 FMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSP----KLSPNTDGIHIENTKSV 269
+N V+SGL I NSP G + + + ++I + NTD I + V
Sbjct: 110 HSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYV 169
Query: 270 GIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAII 329
I + + N DDC+++ +G ++ + C HG+SIGS+G S V N+T ++ I
Sbjct: 170 TISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGR-SDNTVKNVTFVDSTI 227
Query: 330 RESDNGLRIKTWQGGTGCVSDLSFENIQMENV-RNCINIDQYYCLSKECLNQTSAVFVTG 388
SDNG+RIKT TG VSD+++++I + ++ + I + Q Y + T+ V +T
Sbjct: 228 INSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSST--PTTGVPITD 285
Query: 389 ITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVEL 425
N+ G+ I +C + C+ T +V +
Sbjct: 286 FVLDNVHGSVVSSGTNILISCG-SGSCSDWTWTDVSV 321
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 11/237 (4%)
Query: 210 LIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSV 269
++R ++ V + + ++P FH D C + ++I DGI + + +
Sbjct: 129 ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLDGIDVWGSN-I 186
Query: 270 GIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAII 329
+++ ++N D+C+++ + +++ + + C S G ++GSLGA V++I RN
Sbjct: 187 WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYT 243
Query: 330 RESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGI 389
S+ IK+ GG+G VS++ EN ++ID Y+ S V + I
Sbjct: 244 WSSNQMYMIKS-NGGSGTVSNVLLENFIGHGNAYSLDIDGYW--SSMTAVAGDGVQLNNI 300
Query: 390 TYRNIKGTY--DVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGT 444
T +N KGT PPI CSDT PCT +T+ ++ + G + C +AYG+
Sbjct: 301 TVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS-SELYLCRSAYGS 356
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 124/258 (48%), Gaps = 24/258 (9%)
Query: 169 DMTFTGKG--TIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTI 226
++T TG I+GNGQ +WD +G N +++ P ++ + N ++ L I
Sbjct: 70 NITITGASGHVIDGNGQAYWD-----GKGSNSNSNQKP--DHFIVVQKTTGNSKITNLNI 122
Query: 227 QNSPQFHMKFDGCE-----GVMIDKLSISSPKL-------SPNTDGIHIENTKSVGIYNS 274
QN P G G+++D + P + NTDG I ++ V + N+
Sbjct: 123 QNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNN 182
Query: 275 MISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDN 334
+ N DDC+++ +G +++ ++++ C HG+SIGS+G S V + ++ + S N
Sbjct: 183 HVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGK-SDNVVDGVQFLSSQVVNSQN 240
Query: 335 GLRIKTWQGGTGCVSDLSFENIQMENVRN-CINIDQYYCLSKECLNQTSAVFVTGITYRN 393
G RIK+ G TG +++++++NI + N+ +++ Q Y T+ V ++ I +
Sbjct: 241 GCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIK 300
Query: 394 IKGTYDVRTPPIHFACSD 411
+ GT C D
Sbjct: 301 VTGTVASSAQDWFILCGD 318
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 30/264 (11%)
Query: 159 KQW---LVFYKLDDMTFTGKG--TIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRF 213
++W L+ + +T TG I +G WWD G S P +F
Sbjct: 83 EEWAGPLISMSGEHITVTGASGHLINCDGARWWD-------GKGTSGKKKP-------KF 128
Query: 214 FMSSNL---VVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSP----KLSPNTDGIHIENT 266
F + L ++GL I+N+P + D ++I++ + NTD + N+
Sbjct: 129 FYAHGLDSSSITGLNIKNTPLMAFSVQANDITFTD-VTINNADGDTQGGHNTDAFDVGNS 187
Query: 267 KSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRN 326
V I + N DDC+++ +G ++ TC HG+SIGS+G S V N+T+ +
Sbjct: 188 VGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVGDR-SNNVVKNVTIEH 245
Query: 327 AIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRN-CINIDQYYCLSKECLNQTSAVF 385
+ + S+N +RIKT G TG VS++++ NI M + + + I Q Y K T+ V
Sbjct: 246 STVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVT 305
Query: 386 VTGITYRNIKGTYDVRTPPIHFAC 409
+ + ++ G+ D I+ C
Sbjct: 306 IQDVKLESVTGSVDSGATEIYLLC 329
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 156/416 (37%), Gaps = 74/416 (17%)
Query: 75 DCIFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGP--CK 132
D ++ D+GA GDG G ++ P +GP K
Sbjct: 25 DREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPE-------GVFLTGPIHLK 77
Query: 133 PGLVFQLDGVL-MPPDGPDTWPKADSRKQWL-------VFYKLD--DMTFTGKGTIEGNG 182
+ + G + PD P +R + + + Y LD ++ TG G ++G+
Sbjct: 78 SNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSA 137
Query: 183 --QPWWDLPCKPHRG-----PNGST--------------------SSGPCDSPALIRFFM 215
+ WW K G PN G P+ ++F+
Sbjct: 138 DNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYR 197
Query: 216 SSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSM 275
N++V G+ I NSP + + E V+I + ISS PN DGI E+ K + I
Sbjct: 198 CRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCR 255
Query: 276 ISNGDDCISIGTGCSDVD------------IAD--VTCGPSH-GISIGSLGAHYSQACVS 320
GDD + I +G D D + D V SH G+ IGS V
Sbjct: 256 FDTGDDSVVIKSG-RDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS----EMSGGVR 310
Query: 321 NITVRNAIIRESDNGLRIKTWQGGTGCVSDLSF-ENIQMENVRNCINIDQYYCLSK-ECL 378
N+ RN + + LR+KT G + ++ F +N+ + I I+ Y + E L
Sbjct: 311 NVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEYL 370
Query: 379 NQTSAVFVTGITYRNIKGTYDVRTPPIH--FACSDTVPCTKITMAEVELLPYEGQL 432
+VFV + + G Y VR + + + T I A++ +L GQL
Sbjct: 371 PVVRSVFVKNL--KATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQL 424
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 233 HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDV 292
H+ DG + +D + + L NTDG + +V I N ++ N DDCI+I G +++
Sbjct: 130 HLTLDG---ITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDDCIAINDG-NNI 184
Query: 293 DIADVTCGPSHGISIGSL--GAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGT-GCVS 349
+ C HGISIGS+ G H VSN+ ++ + S G+RIK + T VS
Sbjct: 185 RFENNQCSGGHGISIGSIATGKH-----VSNVVIKGNTVTRSMYGVRIKAQRTATSASVS 239
Query: 350 DLSFE 354
++++
Sbjct: 240 GVTYD 244
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 218 NLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMIS 277
N+ ++G T++N P FH + ++ I + N DGI N+++V ++N+
Sbjct: 341 NVYLAGFTVRN-PAFHGIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVMVFNNFFD 399
Query: 278 NGDDCISIGTGCSDVD----------IADVTCGPSHGISIGSLGAHYSQACVSNITVRNA 327
GDDCI+ G + + + HG + G+H + A + +I N
Sbjct: 400 TGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIV--TGSH-TGAWIEDILAENN 456
Query: 328 IIRESDNGLRIKTWQGGTGCVSDLSFENIQMENV 361
++ +D GLR K+ G +++F N M ++
Sbjct: 457 VMYLTDIGLRAKSTSTIGGGARNVTFRNNAMRDL 490
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 114 APSDYVFKITSTIFSG-PCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFY--KLDDM 170
AP++ K T +G KPG+ DG+LM P T PK D+ + V Y +L D
Sbjct: 90 APTEAALKAERTFMAGEKAKPGVKELADGILMTELTPGTGPKPDANGRVEVRYVGRLPDG 149
Query: 171 TFTGKGTIEGNGQPWW 186
+ T QP W
Sbjct: 150 KIFDQST-----QPQW 160
>pdb|3Q4N|A Chain A, Crystal Structure Of Hypothetical Protein Mj0754 From
Methanococcus Jannaschii Dsm 2661
pdb|3Q4N|B Chain B, Crystal Structure Of Hypothetical Protein Mj0754 From
Methanococcus Jannaschii Dsm 2661
Length = 193
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 226 IQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGD----D 281
I S Q HM D + +++K +I P + ++ G+ N K +Y ++ GD D
Sbjct: 50 IAESEQTHM--DAVK-YLLEKYNIPDP-VKNDSIGV-FSNPKFEELYKKLVEKGDKSEVD 104
Query: 282 CISIGTGCSDVDIADV 297
+ +G D+DIAD+
Sbjct: 105 ALKVGATIEDLDIADL 120
>pdb|3Q4O|A Chain A, Crystal Structure Of A Deletion Mutant(11-185) Of
Hypothetical Protein Mj0754 Determined To 1.34a
pdb|3Q4Q|A Chain A, Crystal Structure Of A Deletion Mutant(11-185) Of
Hypothetical Protein Mj0754 With Mn2+
pdb|3Q4R|A Chain A, Crystal Structure Of A Deletion Mutant(11-185) Of
Hypothetical Protein Mj0754 With Zn2+
Length = 196
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 225 TIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGD---- 280
I S Q HM D + +++K +I P + ++ G+ N K +Y ++ GD
Sbjct: 60 NIAESEQTHM--DAVK-YLLEKYNIPDP-VKNDSIGV-FSNPKFEELYKKLVEKGDKSEV 114
Query: 281 DCISIGTGCSDVDIADV 297
D + +G D+DIAD+
Sbjct: 115 DALKVGATIEDLDIADL 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,279,161
Number of Sequences: 62578
Number of extensions: 549569
Number of successful extensions: 945
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 15
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)