Query 012057
Match_columns 472
No_of_seqs 285 out of 1836
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.1E-79 2.4E-84 635.9 49.5 379 74-462 49-429 (443)
2 PLN02218 polygalacturonase ADP 100.0 5.6E-76 1.2E-80 605.7 46.9 363 74-455 64-430 (431)
3 PLN03003 Probable polygalactur 100.0 2.7E-75 5.8E-80 598.7 44.2 367 74-460 20-393 (456)
4 PLN02155 polygalacturonase 100.0 1.3E-74 2.7E-79 589.4 45.5 366 75-457 25-393 (394)
5 PLN03010 polygalacturonase 100.0 7.2E-74 1.6E-78 585.0 45.8 357 75-457 44-404 (409)
6 PLN02188 polygalacturonase/gly 100.0 9.8E-72 2.1E-76 570.6 46.3 368 74-456 33-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 6.4E-55 1.4E-59 439.6 30.5 317 109-443 6-322 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 3.3E-41 7.2E-46 351.0 27.6 281 73-368 78-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 2.3E-23 5E-28 211.0 23.5 241 75-360 35-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 6.3E-21 1.4E-25 181.6 18.3 213 77-336 1-224 (225)
11 PLN03003 Probable polygalactur 99.9 2.2E-19 4.8E-24 185.5 27.4 217 209-451 105-360 (456)
12 PLN02188 polygalacturonase/gly 99.9 3.7E-19 8E-24 183.0 28.9 224 132-399 121-377 (404)
13 PLN02793 Probable polygalactur 99.9 3.8E-19 8.2E-24 185.0 28.8 222 132-399 142-397 (443)
14 PLN02218 polygalacturonase ADP 99.9 6.4E-19 1.4E-23 182.5 29.7 196 209-429 148-384 (431)
15 PLN03010 polygalacturonase 99.8 7.2E-19 1.6E-23 180.5 28.7 240 168-449 105-375 (409)
16 PF00295 Glyco_hydro_28: Glyco 99.8 5.8E-19 1.3E-23 178.3 24.0 219 134-398 61-310 (326)
17 PLN02155 polygalacturonase 99.8 6.3E-18 1.4E-22 173.2 30.1 218 209-451 107-366 (394)
18 PF03718 Glyco_hydro_49: Glyco 99.7 1.5E-14 3.2E-19 148.5 30.3 276 110-428 233-554 (582)
19 TIGR03805 beta_helix_1 paralle 99.6 8E-14 1.7E-18 139.9 20.7 116 215-340 61-181 (314)
20 COG5434 PGU1 Endopygalactoruna 99.3 2.9E-11 6.2E-16 127.3 15.8 152 231-398 238-397 (542)
21 TIGR03805 beta_helix_1 paralle 98.9 2E-07 4.3E-12 93.8 22.8 228 97-370 1-252 (314)
22 PF12541 DUF3737: Protein of u 98.8 4.1E-08 8.9E-13 93.3 10.8 126 212-365 93-229 (277)
23 PF13229 Beta_helix: Right han 98.7 3.6E-07 7.7E-12 81.4 13.2 138 211-367 3-144 (158)
24 COG3866 PelB Pectate lyase [Ca 98.5 4.2E-06 9.1E-11 81.1 16.5 123 211-333 95-230 (345)
25 PF12541 DUF3737: Protein of u 98.5 5.8E-07 1.3E-11 85.6 10.4 99 213-338 133-231 (277)
26 smart00656 Amb_all Amb_all dom 98.5 8.1E-06 1.8E-10 76.2 17.4 100 232-332 32-144 (190)
27 TIGR03808 RR_plus_rpt_1 twin-a 98.5 4.4E-06 9.4E-11 86.0 16.4 146 210-368 108-291 (455)
28 PRK10123 wcaM putative colanic 98.4 2.7E-05 5.9E-10 74.9 18.5 57 75-145 32-90 (464)
29 PF13229 Beta_helix: Right han 98.4 2.5E-06 5.4E-11 75.9 11.1 118 210-340 25-146 (158)
30 PF03718 Glyco_hydro_49: Glyco 98.4 5.8E-05 1.3E-09 78.7 20.8 245 109-397 256-552 (582)
31 PF05048 NosD: Periplasmic cop 98.3 3.3E-05 7.1E-10 74.5 15.8 113 210-338 37-151 (236)
32 PLN02304 probable pectinestera 98.2 0.0003 6.6E-09 71.7 21.5 49 88-141 82-133 (379)
33 PF00544 Pec_lyase_C: Pectate 98.2 1.8E-05 3.8E-10 74.6 11.7 113 216-332 20-158 (200)
34 PF05048 NosD: Periplasmic cop 98.2 4.7E-05 1E-09 73.4 14.6 134 210-366 15-150 (236)
35 PLN02634 probable pectinestera 98.1 0.00059 1.3E-08 69.2 21.9 45 93-141 67-114 (359)
36 COG3866 PelB Pectate lyase [Ca 98.1 0.00036 7.8E-09 68.0 19.3 178 135-366 77-281 (345)
37 PF14592 Chondroitinas_B: Chon 98.1 0.0001 2.2E-09 75.8 15.9 26 93-121 3-28 (425)
38 PF07602 DUF1565: Protein of u 98.0 0.00022 4.7E-09 68.8 15.7 189 93-361 14-222 (246)
39 smart00656 Amb_all Amb_all dom 97.9 0.0011 2.4E-08 62.0 17.7 114 210-333 33-167 (190)
40 COG3420 NosD Nitrous oxidase a 97.8 0.0035 7.6E-08 62.1 19.2 112 165-297 74-188 (408)
41 PLN02773 pectinesterase 97.8 0.0051 1.1E-07 61.7 20.8 50 88-141 12-63 (317)
42 PF12708 Pectate_lyase_3: Pect 97.6 0.0033 7.2E-08 59.4 16.8 123 219-365 94-224 (225)
43 PRK10531 acyl-CoA thioesterase 97.6 0.0066 1.4E-07 62.9 19.9 51 86-141 87-141 (422)
44 PLN02480 Probable pectinestera 97.6 0.008 1.7E-07 61.0 20.1 47 92-141 58-106 (343)
45 PF12218 End_N_terminal: N ter 97.5 8.2E-05 1.8E-09 54.8 3.3 39 85-126 1-39 (67)
46 PLN02708 Probable pectinestera 97.5 0.0083 1.8E-07 64.7 19.4 46 93-141 252-300 (553)
47 PLN02665 pectinesterase family 97.5 0.02 4.2E-07 58.6 20.8 201 93-361 79-298 (366)
48 PLN02176 putative pectinestera 97.4 0.018 3.9E-07 58.3 19.6 45 93-141 50-97 (340)
49 PLN02682 pectinesterase family 97.4 0.023 5E-07 58.1 20.5 45 93-141 81-128 (369)
50 PLN02170 probable pectinestera 97.4 0.021 4.5E-07 60.9 20.6 50 88-141 232-284 (529)
51 PLN02432 putative pectinestera 97.3 0.028 6.1E-07 55.8 19.2 45 93-141 22-69 (293)
52 PLN02506 putative pectinestera 97.3 0.019 4E-07 61.8 18.7 46 93-141 243-290 (537)
53 PLN02301 pectinesterase/pectin 97.2 0.03 6.6E-07 60.3 19.7 46 93-141 247-294 (548)
54 PLN02916 pectinesterase family 97.2 0.033 7.1E-07 59.2 19.7 46 93-141 198-248 (502)
55 PLN02201 probable pectinestera 97.2 0.042 9E-07 58.8 20.6 49 88-141 213-264 (520)
56 PLN02484 probable pectinestera 97.2 0.028 6.1E-07 61.1 19.6 47 93-141 283-331 (587)
57 PLN02713 Probable pectinestera 97.2 0.031 6.6E-07 60.6 19.0 80 213-301 336-420 (566)
58 PLN02488 probable pectinestera 97.1 0.064 1.4E-06 56.8 20.7 45 93-141 208-255 (509)
59 PF01095 Pectinesterase: Pecti 97.1 0.02 4.2E-07 57.3 16.1 46 93-141 11-58 (298)
60 PLN02745 Putative pectinestera 97.1 0.042 9.2E-07 59.8 19.6 46 93-141 296-343 (596)
61 PLN02671 pectinesterase 97.1 0.066 1.4E-06 54.6 19.7 49 88-141 66-117 (359)
62 PLN02933 Probable pectinestera 97.1 0.063 1.4E-06 57.5 20.3 46 93-141 229-276 (530)
63 PLN02314 pectinesterase 97.1 0.037 8E-07 60.3 18.9 45 93-141 289-336 (586)
64 PLN02416 probable pectinestera 97.1 0.037 7.9E-07 59.7 18.7 45 93-141 241-288 (541)
65 PLN02990 Probable pectinestera 97.1 0.043 9.3E-07 59.5 19.3 45 93-141 270-317 (572)
66 PLN03043 Probable pectinestera 97.1 0.047 1E-06 58.8 19.4 152 88-301 230-393 (538)
67 PLN02497 probable pectinestera 97.1 0.078 1.7E-06 53.6 19.7 45 93-141 43-90 (331)
68 PLN02313 Pectinesterase/pectin 97.0 0.048 1E-06 59.4 19.0 46 93-141 286-333 (587)
69 PLN02217 probable pectinestera 97.0 0.041 8.8E-07 60.5 18.4 211 93-364 261-489 (670)
70 PLN02995 Probable pectinestera 96.9 0.06 1.3E-06 58.0 18.7 45 93-141 234-283 (539)
71 PLN02468 putative pectinestera 96.9 0.077 1.7E-06 57.6 19.4 46 93-141 269-316 (565)
72 PF00544 Pec_lyase_C: Pectate 96.9 0.013 2.8E-07 55.2 12.0 115 214-338 43-187 (200)
73 PLN02197 pectinesterase 96.7 0.061 1.3E-06 58.4 16.9 46 93-141 286-333 (588)
74 PF01696 Adeno_E1B_55K: Adenov 96.5 0.14 3.1E-06 52.4 16.9 49 79-142 45-94 (386)
75 PRK10123 wcaM putative colanic 96.0 0.79 1.7E-05 44.8 17.7 22 104-125 66-87 (464)
76 PF03211 Pectate_lyase: Pectat 95.1 1.3 2.7E-05 42.0 15.4 128 240-393 61-194 (215)
77 COG4677 PemB Pectin methyleste 94.9 0.53 1.2E-05 46.8 12.9 30 92-122 92-124 (405)
78 PF07602 DUF1565: Protein of u 94.4 1.7 3.7E-05 42.2 15.0 106 282-396 116-224 (246)
79 COG3420 NosD Nitrous oxidase a 94.0 3.1 6.8E-05 41.8 15.9 108 215-337 75-198 (408)
80 TIGR03804 para_beta_helix para 92.4 0.19 4E-06 34.9 3.6 38 235-277 3-40 (44)
81 PF03211 Pectate_lyase: Pectat 92.2 7.5 0.00016 36.9 15.0 133 216-355 60-194 (215)
82 TIGR03804 para_beta_helix para 91.6 0.34 7.3E-06 33.6 4.1 41 260-301 1-41 (44)
83 PF01696 Adeno_E1B_55K: Adenov 90.6 6.7 0.00014 40.4 13.9 77 218-301 122-199 (386)
84 PLN02665 pectinesterase family 89.5 11 0.00023 38.9 14.5 114 236-362 150-273 (366)
85 PLN02698 Probable pectinestera 88.8 6.1 0.00013 42.4 12.7 79 213-300 266-349 (497)
86 PLN02773 pectinesterase 88.6 14 0.0003 37.3 14.4 82 211-301 96-182 (317)
87 PF09251 PhageP22-tail: Salmon 86.7 41 0.00089 35.0 16.2 109 266-397 263-396 (549)
88 PF09251 PhageP22-tail: Salmon 84.8 8.4 0.00018 39.9 10.3 69 289-359 263-348 (549)
89 PF08480 Disaggr_assoc: Disagg 80.3 8 0.00017 35.6 7.4 41 289-334 33-78 (198)
90 PF01095 Pectinesterase: Pecti 78.8 37 0.0008 34.0 12.5 137 213-363 83-238 (298)
91 PLN02468 putative pectinestera 73.1 64 0.0014 35.4 13.4 111 238-361 343-460 (565)
92 PLN02197 pectinesterase 71.3 78 0.0017 34.9 13.5 80 212-300 359-443 (588)
93 KOG2675 Adenylate cyclase-asso 68.7 42 0.00091 35.0 10.0 13 210-222 355-367 (480)
94 PLN02698 Probable pectinestera 67.5 1.1E+02 0.0024 33.0 13.5 113 237-362 267-386 (497)
95 PF08480 Disaggr_assoc: Disagg 67.5 28 0.00061 32.1 7.7 77 290-368 2-83 (198)
96 PLN02170 probable pectinestera 65.6 1.3E+02 0.0029 32.6 13.6 68 239-308 312-380 (529)
97 PLN02506 putative pectinestera 65.3 1.1E+02 0.0024 33.3 13.0 41 266-308 346-386 (537)
98 PLN02314 pectinesterase 65.0 1.1E+02 0.0025 33.6 13.2 111 238-361 363-480 (586)
99 PF14592 Chondroitinas_B: Chon 64.9 25 0.00054 36.9 7.7 62 241-304 165-237 (425)
100 PLN02217 probable pectinestera 64.3 84 0.0018 35.1 12.1 112 237-361 334-452 (670)
101 PLN02916 pectinesterase family 64.1 1.6E+02 0.0034 31.9 13.7 19 211-229 271-289 (502)
102 PLN02201 probable pectinestera 63.2 1.5E+02 0.0032 32.3 13.4 80 212-300 288-372 (520)
103 PLN02745 Putative pectinestera 62.8 1.4E+02 0.003 33.0 13.4 81 238-330 370-451 (596)
104 PLN02480 Probable pectinestera 62.5 1.6E+02 0.0035 30.1 13.0 110 239-361 131-252 (343)
105 PLN02933 Probable pectinestera 60.3 2.4E+02 0.0053 30.6 14.4 80 212-300 300-384 (530)
106 PLN02301 pectinesterase/pectin 60.0 1.4E+02 0.0031 32.5 12.8 41 266-308 350-390 (548)
107 PF07172 GRP: Glycine rich pro 59.2 9.4 0.0002 31.4 2.8 26 1-27 1-26 (95)
108 PLN02416 probable pectinestera 59.1 1.1E+02 0.0025 33.3 11.8 81 239-331 316-397 (541)
109 PLN02313 Pectinesterase/pectin 57.6 1.4E+02 0.003 33.0 12.2 111 238-361 360-477 (587)
110 PLN03043 Probable pectinestera 56.5 1.6E+02 0.0034 32.2 12.4 113 236-361 309-428 (538)
111 PLN02484 probable pectinestera 54.5 1.5E+02 0.0033 32.6 12.0 111 238-361 358-475 (587)
112 KOG1924 RhoA GTPase effector D 52.5 13 0.00027 41.5 3.2 9 79-87 608-616 (1102)
113 PLN02488 probable pectinestera 50.4 3.5E+02 0.0076 29.3 13.5 79 213-300 280-363 (509)
114 PLN02995 Probable pectinestera 49.9 2.3E+02 0.005 30.9 12.4 68 239-308 311-379 (539)
115 COG4677 PemB Pectin methyleste 48.3 46 0.001 33.5 6.1 40 78-117 82-131 (405)
116 PRK13855 type IV secretion sys 47.4 76 0.0016 32.7 7.7 13 73-85 108-120 (376)
117 PLN02432 putative pectinestera 47.0 3.1E+02 0.0067 27.4 12.7 42 266-309 120-161 (293)
118 smart00710 PbH1 Parallel beta- 43.8 29 0.00063 19.8 2.6 11 268-278 3-13 (26)
119 PF06692 MNSV_P7B: Melon necro 43.5 22 0.00047 26.0 2.2 25 7-31 17-41 (61)
120 PLN02708 Probable pectinestera 41.8 29 0.00063 37.9 4.0 112 237-361 327-449 (553)
121 PRK09752 adhesin; Provisional 41.1 7.1E+02 0.015 29.9 15.0 63 239-301 120-191 (1250)
122 PLN02713 Probable pectinestera 41.1 1.7E+02 0.0038 32.1 9.8 110 239-361 339-455 (566)
123 smart00722 CASH Domain present 40.0 1.9E+02 0.004 24.3 8.3 12 217-228 45-56 (146)
124 COG5178 PRP8 U5 snRNP spliceos 39.1 26 0.00057 40.8 3.2 12 414-425 381-392 (2365)
125 PRK09752 adhesin; Provisional 38.2 7.8E+02 0.017 29.6 14.9 117 210-331 114-265 (1250)
126 PRK10531 acyl-CoA thioesterase 37.9 2.7E+02 0.0058 29.4 10.2 116 236-361 202-336 (422)
127 PHA01732 proline-rich protein 35.7 46 0.001 26.7 3.2 10 93-102 43-52 (94)
128 smart00722 CASH Domain present 31.0 1.5E+02 0.0033 24.9 6.2 68 214-284 73-144 (146)
129 PLN02682 pectinesterase family 29.0 6.7E+02 0.014 26.0 17.9 138 211-365 157-309 (369)
130 PLN02671 pectinesterase 28.6 6.7E+02 0.015 25.9 12.6 19 211-229 148-166 (359)
131 KOG1777 Putative Zn-finger pro 28.6 72 0.0016 33.5 4.1 87 260-358 420-510 (625)
132 PF11027 DUF2615: Protein of u 22.5 2E+02 0.0043 24.0 4.9 6 11-16 62-67 (103)
133 PF04834 Adeno_E3_14_5: Early 21.9 3.4E+02 0.0074 22.4 6.0 7 7-13 25-31 (97)
134 PRK13301 putative L-aspartate 21.1 1.2E+02 0.0026 29.9 4.0 38 75-118 86-123 (267)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.1e-79 Score=635.93 Aligned_cols=379 Identities=43% Similarity=0.834 Sum_probs=344.5
Q ss_pred CCceEEeeeecccCCCCcchHHHHHHHHHHHhhc-CCcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCC
Q 012057 74 TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAV-EAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTW 152 (472)
Q Consensus 74 ~~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~-~g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~ 152 (472)
.+++|||+||||+|||++|||+|||+||++||+. +|++|+||+|++|+++++.|+||||++++|+++|+|+++.++.+|
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence 3589999999999999999999999999977875 579999999977999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCC
Q 012057 153 PKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQF 232 (472)
Q Consensus 153 ~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~ 232 (472)
+.. ..+.|+.+.+.+|++|+|.|+|||+|+.||...++... .+.. ..||++|+|.+|+|++|++++++|+|.|
T Consensus 129 ~~~-~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~-~~~~-----~~rP~~i~f~~~~nv~v~gitl~nSp~~ 201 (443)
T PLN02793 129 KGL-NPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINH-TNPC-----RHAPTAITFHKCKDLRVENLNVIDSQQM 201 (443)
T ss_pred cCC-CCceEEEEecCceEEEEeceEEECCCcccccccccccC-CCCc-----cCCceEEEEEeeccEEEECeEEEcCCCe
Confidence 865 34679999999999999999999999999976432111 1110 1489999999999999999999999999
Q ss_pred eeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCc
Q 012057 233 HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGA 312 (472)
Q Consensus 233 ~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~ 312 (472)
++++.+|+||+|++++|.++..++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+|||+|||+++
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~ 281 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGK 281 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCeeEEEEeeccCC-ccccCCCCceEEEeEEE
Q 012057 313 HYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLS-KECLNQTSAVFVTGITY 391 (472)
Q Consensus 313 ~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~-~~~~~~~~~~~i~nI~f 391 (472)
+...+.|+||+|+||++.++.+|+|||+|+++.|.|+||+|+||+|+++.+||.|+++|+.. ++|.+.++.+.|+||+|
T Consensus 282 ~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~ 361 (443)
T PLN02793 282 SNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISF 361 (443)
T ss_pred cCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEE
Confidence 87778999999999999999999999999999999999999999999999999999999874 36877788999999999
Q ss_pred EeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcCCCCccCCceeecceeeeeeeecCCccccCCCCCC
Q 012057 392 RNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQ 462 (472)
Q Consensus 392 ~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~~~~~~~~~c~~~~g~~~~~~~~~~~~~~~~~~~ 462 (472)
+||+++...+ .++.+.|++..||+||+|+||+++...|. .....|||++|...+...|| +||.++.+.
T Consensus 362 ~nI~Gt~~~~-~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~-~C~~~~~~~ 429 (443)
T PLN02793 362 VHIKGTSATE-EAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPP-PCFSDSTSF 429 (443)
T ss_pred EEEEEEEccc-ccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCC-ccccCCCcc
Confidence 9999988543 47899999999999999999999987665 34689999999999998777 899887753
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=5.6e-76 Score=605.69 Aligned_cols=363 Identities=41% Similarity=0.777 Sum_probs=331.0
Q ss_pred CCceEEeeeecccCCCCcchHHHHHHHHHHHhhcC-CcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCC
Q 012057 74 TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVE-AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTW 152 (472)
Q Consensus 74 ~~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~-g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~ 152 (472)
.+++|||+||||+|||+||||+|||+||++||+.. +++|+||+|++|+++++.|+|||+++++|+++|+|+++.++.+|
T Consensus 64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d~~~y 143 (431)
T PLN02218 64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDY 143 (431)
T ss_pred CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCChhhc
Confidence 46789999999999999999999999998788764 57999999977999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeecCcEEEee--eeeecCCCcccCCCCCCCCCCCCCCCCCCC-CCCeEEEEEeeeeEEEeceEEecC
Q 012057 153 PKADSRKQWLVFYKLDDMTFTGK--GTIEGNGQPWWDLPCKPHRGPNGSTSSGPC-DSPALIRFFMSSNLVVSGLTIQNS 229 (472)
Q Consensus 153 ~~~~~~~~~i~~~~~~nvtI~G~--GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~-~rp~~i~~~~~~nv~I~~v~i~ns 229 (472)
+. ...|+.+.+.+||+|+|. |+|||+|+.||...++..+ .. |+ .||++++|.+|+|++|+||+++|+
T Consensus 144 ~~---~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~-----~~--~~~~rP~~i~f~~~~nv~I~gitl~nS 213 (431)
T PLN02218 144 KD---ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNK-----AK--PCTKAPTALTFYNSKSLIVKNLRVRNA 213 (431)
T ss_pred cc---cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCC-----cC--ccCcCCEEEEEEccccEEEeCeEEEcC
Confidence 64 357999999999999996 9999999999986543111 00 21 589999999999999999999999
Q ss_pred CCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecc
Q 012057 230 PQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGS 309 (472)
Q Consensus 230 ~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs 309 (472)
|.|++++..|+||+|++++|.++...+|+|||++.+|+||+|+||+|.+|||||+++++++||+|+||+|..+|||+|||
T Consensus 214 p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS 293 (431)
T PLN02218 214 QQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGS 293 (431)
T ss_pred CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECc
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeE
Q 012057 310 LGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGI 389 (472)
Q Consensus 310 ~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI 389 (472)
+|.+...+.|+||+|+||++.++.+|+|||+|+++.|.|+||+|+||+|+++++||.|++.|+....|...++.+.|+||
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI 373 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNV 373 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEE
Confidence 99877678999999999999999999999999999999999999999999999999999999987667777788999999
Q ss_pred EEEeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcCCCCccCCceeecceeeeeeeecCCccc
Q 012057 390 TYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDC 455 (472)
Q Consensus 390 ~f~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~~~~~~~~~c~~~~g~~~~~~~~~~~~ 455 (472)
+|+||+++...+ .++.+.|+++.||+||+|+||++... ...|+|++|...+...| .|
T Consensus 374 ~~~NI~gtsa~~-~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p--~c 430 (431)
T PLN02218 374 VYRNISGTSASD-VAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSP--QC 430 (431)
T ss_pred EEEeEEEEecCC-cEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCC--CC
Confidence 999999987533 57889999999999999999999852 24799999999998766 56
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=2.7e-75 Score=598.66 Aligned_cols=367 Identities=37% Similarity=0.720 Sum_probs=329.4
Q ss_pred CCceEEeeeecccCCCCcchHHHHHHHHHHHhhc-CCcEEEecCCcEEEEeeeeecCCCCCc-eEEEeCceEeCCCCCCC
Q 012057 74 TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAV-EAGVVLAPSDYVFKITSTIFSGPCKPG-LVFQLDGVLMPPDGPDT 151 (472)
Q Consensus 74 ~~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~-~g~~V~iP~G~ty~i~~~~l~gp~~s~-v~l~~~Gtl~~~~~~~~ 151 (472)
.+.+|||++|||+|||+||||+|||+||++||++ ++++|+||+|++|+++.+.|.|||++. +.++++|+|+++.. ..
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~ 98 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GN 98 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-cc
Confidence 4567999999999999999999999999988874 579999999988999999999999874 88899999988654 46
Q ss_pred CCCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCC
Q 012057 152 WPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQ 231 (472)
Q Consensus 152 ~~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~ 231 (472)
|... ..+||.|.+++|++|.|.|+|||+|+.||... ..||++++|.+|+|++|+|++++|+|.
T Consensus 99 w~~~--~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~---------------~~rP~~l~f~~~~nv~I~gitl~NSp~ 161 (456)
T PLN03003 99 WKGD--KDQWILFTDIEGLVIEGDGEINGQGSSWWEHK---------------GSRPTALKFRSCNNLRLSGLTHLDSPM 161 (456)
T ss_pred ccCC--CcceEEEEcccceEEeccceEeCCchhhhhcc---------------cCCceEEEEEecCCcEEeCeEEecCCc
Confidence 7543 45799999999999999999999999999741 158999999999999999999999999
Q ss_pred CeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccC
Q 012057 232 FHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLG 311 (472)
Q Consensus 232 ~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~ 311 (472)
|++++.+|++|+|++++|.++..++|+|||++.+|+||+|+||+|.+|||||+++++++||+|+||+|.++|||+|||++
T Consensus 162 w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg 241 (456)
T PLN03003 162 AHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLG 241 (456)
T ss_pred EEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeecc
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCeeEEEEeeccCCc---cccCCCCceEEEe
Q 012057 312 AHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSK---ECLNQTSAVFVTG 388 (472)
Q Consensus 312 ~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~---~~~~~~~~~~i~n 388 (472)
.++..+.|+||+|+||++.++.+|+|||+|+++.|.|+||+|+||+|+++.+||.|+|+|+... .|.+.++.+.|+|
T Consensus 242 ~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~Isn 321 (456)
T PLN03003 242 KDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSK 321 (456)
T ss_pred CCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEe
Confidence 8766688999999999999999999999999999999999999999999999999999998543 2445667899999
Q ss_pred EEEEeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcCC-C-CccCCceeecceeeeeeeecCCccccCCCC
Q 012057 389 ITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYE-G-QLLDDPFCWNAYGTQETLTIPPIDCLQEGE 460 (472)
Q Consensus 389 I~f~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~-~-~~~~~~~c~~~~g~~~~~~~~~~~~~~~~~ 460 (472)
|+|+||+++...+ .++.+.|++..||+||+|+||.++... + .......|+|++|..... .||.+||+.++
T Consensus 322 I~f~NI~GTs~~~-~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~-~~~~~C~~~~~ 393 (456)
T PLN03003 322 VVFSNFIGTSKSE-YGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIA-VPGLECLELST 393 (456)
T ss_pred EEEEeEEEEeCcc-ceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCce-ECCCCccccCC
Confidence 9999999987643 578999999999999999999998763 2 223468999999988754 45558998743
No 4
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.3e-74 Score=589.44 Aligned_cols=366 Identities=35% Similarity=0.711 Sum_probs=328.2
Q ss_pred CceEEeeeecccCCCCcchHHHHHHHHHHHhhc-CCcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCCC
Q 012057 75 DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAV-EAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWP 153 (472)
Q Consensus 75 ~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~-~g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~~ 153 (472)
+.+|||++|||+|||+||||+|||+||++||+. +|++|+||+| +|+++.+.|.||||++++|+++|+|+++.++..|.
T Consensus 25 ~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~~~~ 103 (394)
T PLN02155 25 SNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFG 103 (394)
T ss_pred CcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEcccCCCCceEEEeeEEECcccccccc
Confidence 568999999999999999999999999767765 5789999999 79999999999999999999999999988877774
Q ss_pred CCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCCe
Q 012057 154 KADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFH 233 (472)
Q Consensus 154 ~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~ 233 (472)
. ...|+.+.+.+|++|.| |+|||+|+.||..... +... ..+|++++|.+|++++|++++++|||.|+
T Consensus 104 ~---~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~------~~~~---~~~p~~i~~~~~~nv~i~gitl~nSp~w~ 170 (394)
T PLN02155 104 N---SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS------GQNC---PPGVRSISFNSAKDVIISGVKSMNSQVSH 170 (394)
T ss_pred c---cceeEEEECcCCCEEEc-cEEecCceeEEEcccC------CCCC---CCcccceeEEEeeeEEEECeEEEcCCCeE
Confidence 3 24699999999999999 9999999999974211 1111 13678999999999999999999999999
Q ss_pred eeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCcc
Q 012057 234 MKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAH 313 (472)
Q Consensus 234 i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~ 313 (472)
+++.+|++|+|++++|.++..++|+|||++.+|+||+|+||+|.+|||||+++++++||+|+||+|..+|||+|||+|++
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~ 250 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKE 250 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEecccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCcEEEEEEEeEEEecCCceEEEEeecC-CCceeeeEEEEeEEEEccCeeEEEEeeccCCc-cccCCCCceEEEeEEE
Q 012057 314 YSQACVSNITVRNAIIRESDNGLRIKTWQG-GTGCVSDLSFENIQMENVRNCINIDQYYCLSK-ECLNQTSAVFVTGITY 391 (472)
Q Consensus 314 ~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g-~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~-~~~~~~~~~~i~nI~f 391 (472)
...+.|+||+|+||++.++.+|+|||+|.+ +.|.|+||+|+||+|+++++||.|+|+|+... .|.+..+.+.|+||+|
T Consensus 251 ~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~ 330 (394)
T PLN02155 251 LNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTY 330 (394)
T ss_pred CCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEE
Confidence 567899999999999999999999999965 67999999999999999999999999998754 4665677899999999
Q ss_pred EeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcCCCCccCCceeecceeeeeeeecCCccccC
Q 012057 392 RNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQ 457 (472)
Q Consensus 392 ~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~~~~~~~~~c~~~~g~~~~~~~~~~~~~~ 457 (472)
+||+++...+ .++.+.|++..+|+||+|+||+++...+.. ....|+|++|....+..|+ +||.
T Consensus 331 ~ni~gt~~~~-~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~-~~~~C~n~~G~~~~~~~p~-~c~~ 393 (394)
T PLN02155 331 KNIQGTSATQ-EAMKLVCSKSSPCTGITLQDIKLTYNKGTP-ATSFCFNAVGKSLGVIQPT-SCLN 393 (394)
T ss_pred EeeEEEecCC-ceEEEEeCCCCCEEEEEEEeeEEEecCCCc-cCcEEeccEeEEcccCCcc-cccC
Confidence 9999988643 578999999999999999999999886553 3689999999999876555 8985
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=7.2e-74 Score=584.99 Aligned_cols=357 Identities=36% Similarity=0.705 Sum_probs=329.9
Q ss_pred CceEEeeeecccCCCCcchHHHHHHHHHHHhhcCC--cEEEecCCcEEEEeeeeecCCCC-CceEEEeCceEeCCCCCCC
Q 012057 75 DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEA--GVVLAPSDYVFKITSTIFSGPCK-PGLVFQLDGVLMPPDGPDT 151 (472)
Q Consensus 75 ~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g--~~V~iP~G~ty~i~~~~l~gp~~-s~v~l~~~Gtl~~~~~~~~ 151 (472)
+++|||+||||+|||++|||+|||+||++||+.+| ++|+||+|++|+++++.|.|||+ ++++|+++|+|+++.++.+
T Consensus 44 ~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~ 123 (409)
T PLN03010 44 GQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVA 123 (409)
T ss_pred CcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhh
Confidence 56799999999999999999999999998886544 79999999779999999999996 5899999999999999999
Q ss_pred CCCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCC
Q 012057 152 WPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQ 231 (472)
Q Consensus 152 ~~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~ 231 (472)
|+.. ....|+.|.+++|++|.|.|+|||+|+.||. +++|.+|+|++|++|+++|+|.
T Consensus 124 w~~~-~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~----------------------~l~~~~~~nv~v~gitl~nsp~ 180 (409)
T PLN03010 124 WSNP-KSQMWISFSTVSGLMIDGSGTIDGRGSSFWE----------------------ALHISKCDNLTINGITSIDSPK 180 (409)
T ss_pred ccCC-CCcceEEEecccccEEeeceEEeCCCccccc----------------------eEEEEeecCeEEeeeEEEcCCc
Confidence 9754 3456999999999999999999999999995 5899999999999999999999
Q ss_pred CeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccC
Q 012057 232 FHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLG 311 (472)
Q Consensus 232 ~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~ 311 (472)
|++++.+|++|+|++++|.++..++|+|||++.+|++|+|+||+|.++||||++++++.++.|+++.|..+|||+|||++
T Consensus 181 ~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g 260 (409)
T PLN03010 181 NHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLG 260 (409)
T ss_pred eEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCeeEEEEeeccCCc-cccCCCCceEEEeEE
Q 012057 312 AHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSK-ECLNQTSAVFVTGIT 390 (472)
Q Consensus 312 ~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~-~~~~~~~~~~i~nI~ 390 (472)
..+..+.|+||+|+||++.++.+|+|||+|+++.|.|+||+|+||+|+++++||.|+|+|+... .|.+.++.+.|+||+
T Consensus 261 ~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~ 340 (409)
T PLN03010 261 ADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVK 340 (409)
T ss_pred CCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEE
Confidence 8766778999999999999999999999999999999999999999999999999999998754 577788999999999
Q ss_pred EEeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcCCCCccCCceeecceeeeeeeecCCccccC
Q 012057 391 YRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQ 457 (472)
Q Consensus 391 f~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~~~~~~~~~c~~~~g~~~~~~~~~~~~~~ 457 (472)
|+||+++...+ .++.+.|++..+|+||+|+||+++...+.+ ....|+|+.|.......|| .||+
T Consensus 341 ~~ni~GT~~~~-~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~-~~~~C~nv~g~~~~~~~~~-~C~~ 404 (409)
T PLN03010 341 YVGFRGTTSNE-NAITLKCSAITHCKDVVMDDIDVTMENGEK-PKVECQNVEGESSDTDLMR-DCFK 404 (409)
T ss_pred EEeeEEEeCCC-ccEEEEeCCCCCEeceEEEEEEEEecCCCc-cceEeeCccccccCCCCCC-cccc
Confidence 99999987543 589999999999999999999999886654 4689999999988886666 8995
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=9.8e-72 Score=570.57 Aligned_cols=368 Identities=38% Similarity=0.648 Sum_probs=324.4
Q ss_pred CCceEEeeeecccCCCCcchHHHHHHHHHHHhhcC-CcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCC
Q 012057 74 TDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVE-AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTW 152 (472)
Q Consensus 74 ~~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~-g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~ 152 (472)
.+.+|||+||||+|||++|||+|||+||++||+.+ |++|+||+| +|+++++.|.|||++...|++ +|+++.++++|
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y 109 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRY 109 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHC
Confidence 35689999999999999999999999998777764 579999999 899999999999965544544 89999999999
Q ss_pred CCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCC
Q 012057 153 PKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQF 232 (472)
Q Consensus 153 ~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~ 232 (472)
+. ...|+.|..++||+|+|.|+|||+|+.||........ .+ -..||++|.|.+|+|++|+|++++|+|.|
T Consensus 110 ~~---~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~-~~------~~~rP~~i~f~~~~nv~i~gitl~nSp~w 179 (404)
T PLN02188 110 GS---GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIR-KD------CKLLPTSVKFVNMNNTVVRGITSVNSKFF 179 (404)
T ss_pred CC---ccceEEEeceeeEEEEeeEEEeCCCcccccccccccC-CC------CCcCceEEEEEeeeeEEEeCeEEEcCCCe
Confidence 75 3568999889999999999999999999974311000 00 11589999999999999999999999999
Q ss_pred eeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCc
Q 012057 233 HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGA 312 (472)
Q Consensus 233 ~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~ 312 (472)
++++..|++|+|++++|.++..++|+|||++.+|++|+|+||+|.++||||+++++++||+|+||.|..+|||+|||+|+
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~ 259 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGR 259 (404)
T ss_pred EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCcEEEEEEEeEEEecCCceEEEEeecC--CCceeeeEEEEeEEEEccCeeEEEEeeccCCcccc-CCCCceEEEeE
Q 012057 313 HYSQACVSNITVRNAIIRESDNGLRIKTWQG--GTGCVSDLSFENIQMENVRNCINIDQYYCLSKECL-NQTSAVFVTGI 389 (472)
Q Consensus 313 ~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g--~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~-~~~~~~~i~nI 389 (472)
++..+.|+||+|+||++.++.+|+|||+|.+ +.|.|+||+|+||+|+++++||.|+++|+....|. ..++.+.|+||
T Consensus 260 ~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nI 339 (404)
T PLN02188 260 YPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDI 339 (404)
T ss_pred CCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeE
Confidence 7777889999999999999999999999975 45899999999999999999999999998765553 23567999999
Q ss_pred EEEeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcCCCCccCCceeecceeeeeeeecCCcccc
Q 012057 390 TYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCL 456 (472)
Q Consensus 390 ~f~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~~~~~~~~~~c~~~~g~~~~~~~~~~~~~ 456 (472)
+|+||+++...+ .++.+.|+++.||+||+|+||+++...+.......|+|++|......+|| +|.
T Consensus 340 t~~nI~gt~~~~-~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~-~C~ 404 (404)
T PLN02188 340 YFKNIRGTSSSQ-VAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPP-PCP 404 (404)
T ss_pred EEEEEEEEecCc-eEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCC-CCC
Confidence 999999987533 57889999999999999999999987654444689999999999886665 784
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=6.4e-55 Score=439.60 Aligned_cols=317 Identities=39% Similarity=0.673 Sum_probs=273.6
Q ss_pred CcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCCCCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCC
Q 012057 109 AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDL 188 (472)
Q Consensus 109 g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~ 188 (472)
+++|+||+| +|+++.+.|.+||..++.++++|++.++.....|+ ...||.+.+++|++|+|.|+|||+|+.||+.
T Consensus 6 ~~~v~vP~g-~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~----~~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 6 GGTVVVPAG-TYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGP----NSALIYAENAENITITGKGTIDGNGQAWWDG 80 (326)
T ss_dssp EESEEESTS-TEEEEETSEETECETTCEEEEESEEEEG-EESTSE-----SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred CCEEEECCC-CeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCC----ccEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence 568999999 79999999987778999999999988774444443 1678999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeeccee
Q 012057 189 PCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKS 268 (472)
Q Consensus 189 ~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~n 268 (472)
..... .. ...||++++|.+|++++|++++++|++.|++++..|+||+|++++|.++...+|+|||++.+|+|
T Consensus 81 ~~~~~---~~-----~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~n 152 (326)
T PF00295_consen 81 SGDAN---NN-----GQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKN 152 (326)
T ss_dssp CTTHC---CS-----SSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEE
T ss_pred ccccc---cc-----cccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeE
Confidence 43210 01 12689999999999999999999999999999999999999999999987779999999999999
Q ss_pred EEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecCCCcee
Q 012057 269 VGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCV 348 (472)
Q Consensus 269 V~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v 348 (472)
|+|+||+|+++||||+++++..||+|+||+|.++||++|||++.......|+||+|+||++.++.+|++||+|.++.|.|
T Consensus 153 v~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v 232 (326)
T PF00295_consen 153 VTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYV 232 (326)
T ss_dssp EEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEE
T ss_pred EEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEE
Confidence 99999999999999999998889999999999999999999986544457999999999999999999999999999999
Q ss_pred eeEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeEEEEeEEEEeeCCCCceEEecCCCCceeeEEEEEEEEEcC
Q 012057 349 SDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACSDTVPCTKITMAEVELLPY 428 (472)
Q Consensus 349 ~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~~~~~~~~~i~~~~~~~~~~i~~~ni~~~~~ 428 (472)
+||+|+||+|+++.+||.|++.|.....|...++.+.|+||+|+||+++... ..++.+.|.+..+|+||+|+||+++.
T Consensus 233 ~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~-~~~i~i~~~~~~~~~ni~f~nv~i~~- 310 (326)
T PF00295_consen 233 SNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAG-SSAISIDCSPGSPCSNITFENVNITG- 310 (326)
T ss_dssp EEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEEST-SEEEEEE-BTTSSEEEEEEEEEEEES-
T ss_pred eceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEecc-ceEEEEEECCcCcEEeEEEEeEEEEc-
Confidence 9999999999999999999999988666666667789999999999998875 35789999999999999999999999
Q ss_pred CCCccCCceeeccee
Q 012057 429 EGQLLDDPFCWNAYG 443 (472)
Q Consensus 429 ~~~~~~~~~c~~~~g 443 (472)
+. ....|+|+..
T Consensus 311 -g~--~~~~c~nv~~ 322 (326)
T PF00295_consen 311 -GK--KPAQCKNVPS 322 (326)
T ss_dssp -SB--SESEEBSCCT
T ss_pred -CC--cCeEEECCCC
Confidence 32 3578998764
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.3e-41 Score=351.00 Aligned_cols=281 Identities=32% Similarity=0.544 Sum_probs=235.5
Q ss_pred CCCceEEeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEEEEeeeeecCCCCCceEEEe-Cc-eEeCCCCCC
Q 012057 73 STDCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQL-DG-VLMPPDGPD 150 (472)
Q Consensus 73 ~~~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~-~G-tl~~~~~~~ 150 (472)
+....++|++|||+|||.+||++|||+||+++++.+|++|+||+| +|+...+.| ||+++|++ +| ||+.+.++.
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~a~Gg~V~lPaG-tylsg~l~L----KS~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAIDACASAGGGTVLLPAG-TYLSGPLFL----KSNVTLHLAEGATLLASSNPK 152 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHHHhhhhhcCceEEECCc-eeEeeeEEE----ecccEEEecCCceeeCCCChh
Confidence 456789999999999999999999999999766567999999999 999999999 99999999 47 899999999
Q ss_pred CCCCCC-----CCce-----------------------EEEEEeecCcE-EEeeeeeecCC----CcccCCCCCCCCCCC
Q 012057 151 TWPKAD-----SRKQ-----------------------WLVFYKLDDMT-FTGKGTIEGNG----QPWWDLPCKPHRGPN 197 (472)
Q Consensus 151 ~~~~~~-----~~~~-----------------------~i~~~~~~nvt-I~G~GtIdG~g----~~~w~~~~~~~~g~~ 197 (472)
+|+... ...+ .+.....+|.. |.|.|+|+|++ ..||.... .-
T Consensus 153 ~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g-----~~ 227 (542)
T COG5434 153 DYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLG-----AV 227 (542)
T ss_pred hccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhccc-----ch
Confidence 999410 0111 12222344444 78888888864 22665432 00
Q ss_pred CCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEe
Q 012057 198 GSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMIS 277 (472)
Q Consensus 198 g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~ 277 (472)
...+.+-..||..+.|..|.||+++|++|.+++.|.+++..|+|++++|++|++.... |+|||++.+|+||+|++|+|.
T Consensus 228 ~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fd 306 (542)
T COG5434 228 ETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFD 306 (542)
T ss_pred hhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEe
Confidence 0111110158999999999999999999999999999999999999999999997655 999999999999999999999
Q ss_pred cCCceEEeCCC-----------ceeEEEEeeeecCCCc-ceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecCCC
Q 012057 278 NGDDCISIGTG-----------CSDVDIADVTCGPSHG-ISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGT 345 (472)
Q Consensus 278 ~gDD~I~i~s~-----------s~nI~I~n~~~~~~~g-i~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~ 345 (472)
++||||+++++ ++||.|+||++..+|| +.+||++ .++++||++|||.|.++++|||||+..++.
T Consensus 307 tgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~~~~d~GLRikt~~~~g 382 (542)
T COG5434 307 TGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVMDNTDRGLRIKTNDGRG 382 (542)
T ss_pred cCCceEEeecccCCcccccccccccEEEecceecccccceEeeeec----CCceeEEEEEeeeeccCcceeeeeeecccc
Confidence 99999999995 5899999999999986 8999986 789999999999999999999999999888
Q ss_pred ceeeeEEEEeEEEEccCeeEEEE
Q 012057 346 GCVSDLSFENIQMENVRNCINID 368 (472)
Q Consensus 346 g~v~nI~f~Ni~~~~v~~~i~I~ 368 (472)
|.++||+|+++.|+++..+..|.
T Consensus 383 G~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 383 GGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eeEEEEEEecccccCcccceeee
Confidence 99999999999999986444433
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.92 E-value=2.3e-23 Score=211.01 Aligned_cols=241 Identities=15% Similarity=0.183 Sum_probs=167.4
Q ss_pred CceEEeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEEEEeeeeecCCCCCceEEEeC-ceE-eCCCCCCCC
Q 012057 75 DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLD-GVL-MPPDGPDTW 152 (472)
Q Consensus 75 ~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~-Gtl-~~~~~~~~~ 152 (472)
.+.+|+++|||++||.+|+|+|||+||++| +.++++|.+|+| +|+.+.+.| +++++|.++ |.. +..+
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a~gG~tV~Lp~G-~Y~~G~L~L----~spltL~G~~gAt~~vId----- 103 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEA-ARAQTPLALPPG-VYRTGPLRL----PSGAQLIGVRGATRLVFT----- 103 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHh-hcCCCEEEECCC-ceecccEEE----CCCcEEEecCCcEEEEEc-----
Confidence 344899999999999999999999999964 445789999999 899999999 889999987 331 1101
Q ss_pred CCCCCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCC
Q 012057 153 PKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQF 232 (472)
Q Consensus 153 ~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~ 232 (472)
....++...++++|+|+|. +|+|+|..|- .++.+|.+..|++++|++++|.++..|
T Consensus 104 ----G~~~lIiai~A~nVTIsGL-tIdGsG~dl~-------------------~rdAgI~v~~a~~v~Iedn~L~gsg~F 159 (455)
T TIGR03808 104 ----GGPSLLSSEGADGIGLSGL-TLDGGGIPLP-------------------QRRGLIHCQGGRDVRITDCEITGSGGN 159 (455)
T ss_pred ----CCceEEEEecCCCeEEEee-EEEeCCCccc-------------------CCCCEEEEccCCceEEEeeEEEcCCcc
Confidence 1234566788999999996 9999997652 366799999999999999999999999
Q ss_pred eeeeeccc----------------------cEEEEeEEEeCCCC--------------------------------CCCC
Q 012057 233 HMKFDGCE----------------------GVMIDKLSISSPKL--------------------------------SPNT 258 (472)
Q Consensus 233 ~i~~~~~~----------------------nv~I~~~~i~~~~~--------------------------------~~n~ 258 (472)
+|.++.|+ ++.|++.+|....+ ....
T Consensus 160 GI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~G 239 (455)
T TIGR03808 160 GIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYG 239 (455)
T ss_pred eEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCcc
Confidence 99999999 55555555543222 2345
Q ss_pred CceeeecceeEEEEceEEecCC-ceEEeCCCceeEEEEeeeecCCC--cceecccCccCCCCcEEE-EEEEeEEEecCCc
Q 012057 259 DGIHIENTKSVGIYNSMISNGD-DCISIGTGCSDVDIADVTCGPSH--GISIGSLGAHYSQACVSN-ITVRNAIIRESDN 334 (472)
Q Consensus 259 DGI~i~~s~nV~I~n~~i~~gD-D~I~i~s~s~nI~I~n~~~~~~~--gi~iGs~~~~~~~~~i~n-I~i~n~~i~~~~~ 334 (472)
+||++.++.+++|+++.|+.++ |+|-+.+ ++|+.|+++.|..-. ++.. + ...+ -.|+|+++.+...
T Consensus 240 NGI~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhy--m-------fs~~g~~i~~N~~~g~~~ 309 (455)
T TIGR03808 240 NAINAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYS--E-------FAFEGAVIANNTVDGAAV 309 (455)
T ss_pred ccEEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEE--E-------EeCCCcEEeccEEecCcc
Confidence 5666666666666666666666 6666655 556666666665421 2211 0 0011 2356666666666
Q ss_pred eEEEEeecC--CCceeeeEEEEeEEEEc
Q 012057 335 GLRIKTWQG--GTGCVSDLSFENIQMEN 360 (472)
Q Consensus 335 gi~I~~~~g--~~g~v~nI~f~Ni~~~~ 360 (472)
|+.+-.... +...|++-.++|++-+.
T Consensus 310 G~av~nf~~ggr~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 310 GVSVCNFNEGGRLAVVQGNIIRNLIPKR 337 (455)
T ss_pred eEEEEeecCCceEEEEecceeeccccCC
Confidence 666655432 23456666666666553
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.87 E-value=6.3e-21 Score=181.63 Aligned_cols=213 Identities=31% Similarity=0.438 Sum_probs=124.1
Q ss_pred eEEeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEEEEee-eeecCCCCCceEEEeCc---e-EeCCCCCCC
Q 012057 77 IFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITS-TIFSGPCKPGLVFQLDG---V-LMPPDGPDT 151 (472)
Q Consensus 77 ~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~~-~~l~gp~~s~v~l~~~G---t-l~~~~~~~~ 151 (472)
.+||++|||+|||++|||+|||+||+++.+.++++|+||+| +|+++. +.+ +++++|.++| + +........
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~~g~~v~~P~G-~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~~ 75 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAAGGGVVYFPPG-TYRISGTLII----PSNVTLRGAGGNSTILFLSGSGDS 75 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCSTTSEEEEE-SE-EEEESS-EEE-----TTEEEEESSTTTEEEEECTTTST
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccCCCeEEEEcCc-EEEEeCCeEc----CCCeEEEccCCCeeEEEecCcccc
Confidence 47999999999999999999999997677778999999999 899988 666 7899999986 3 332222111
Q ss_pred CCCCCCCceEEEEEe-ecC--cEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEec
Q 012057 152 WPKADSRKQWLVFYK-LDD--MTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQN 228 (472)
Q Consensus 152 ~~~~~~~~~~i~~~~-~~n--vtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~n 228 (472)
+.. ......+.. ..+ +.|++ -+|++.....- .....+.|..+.++.|+++++.+
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~-------------------~~~~~i~~~~~~~~~i~nv~~~~ 132 (225)
T PF12708_consen 76 FSV---VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPN-------------------NNNNGIRFNSSQNVSISNVRIEN 132 (225)
T ss_dssp SCC---EEEEEECCSCSCCEEEEEEE-EEEEETCGCE--------------------SCEEEEEETTEEEEEEEEEEEES
T ss_pred ccc---ccceeeeecCCCCceEEEEe-eEEEcccccCC-------------------CCceEEEEEeCCeEEEEeEEEEc
Confidence 110 000111111 112 22444 44554443210 11246777778888888888887
Q ss_pred CCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeec-ceeEEEEceEEecCCceEEeCCCceeEEEEeeeecC--CCcc
Q 012057 229 SPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIEN-TKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGP--SHGI 305 (472)
Q Consensus 229 s~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~-s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~--~~gi 305 (472)
.....+.+..+....+.+.... .++.+.+ +.++.+.||.+..+++++..+ .+++.|+||++.. ..||
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~n~~~~~~~~~gi 202 (225)
T PF12708_consen 133 SGGDGIYFNTGTDYRIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGIILG--NNNITISNNTFEGNCGNGI 202 (225)
T ss_dssp -SS-SEEEECCEECEEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEECE--EEEEEEECEEEESSSSESE
T ss_pred cCccEEEEEccccCcEeecccc--------eeeeeccceeEEEECCccccCCCceeEee--cceEEEEeEEECCccceeE
Confidence 7666666664444444333222 1344443 345666777777777663222 3677777777665 2456
Q ss_pred eecccCccCCCCcEEEEEEEeEEEecCCceE
Q 012057 306 SIGSLGAHYSQACVSNITVRNAIIRESDNGL 336 (472)
Q Consensus 306 ~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi 336 (472)
.+-.. .+++|+|++++++..||
T Consensus 203 ~i~~~---------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 203 NIEGG---------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEEEC---------SEEEEEEEEEESSSEEE
T ss_pred EEECC---------eEEEEEeEEEECCccCc
Confidence 55321 23667777777666665
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.86 E-value=2.2e-19 Score=185.49 Aligned_cols=217 Identities=21% Similarity=0.245 Sum_probs=169.6
Q ss_pred eEEEEEeeeeEEEeceEEecC---CCC--------eeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEe
Q 012057 209 ALIRFFMSSNLVVSGLTIQNS---PQF--------HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMIS 277 (472)
Q Consensus 209 ~~i~~~~~~nv~I~~v~i~ns---~~~--------~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~ 277 (472)
.+|.|.+.++++|.|--..+. .+| .+.+..|+|++|+++++.+++.+ .+++..|++|+|+|..|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEe
Confidence 489999999999998555543 223 37899999999999999988765 388999999999999998
Q ss_pred c-----CCceEEeCCCceeEEEEeeeecCCC-cceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecC--CCceee
Q 012057 278 N-----GDDCISIGTGCSDVDIADVTCGPSH-GISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQG--GTGCVS 349 (472)
Q Consensus 278 ~-----gDD~I~i~s~s~nI~I~n~~~~~~~-gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g--~~g~v~ 349 (472)
+ +.|||.+.+ ++||+|+||.+..++ .|+|++ +.+||+|+||++... +||.|++... ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGPG-HGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEECC-CCeEEeeccCCCCcceEE
Confidence 7 568999988 999999999999974 699976 348999999999875 8999998732 236799
Q ss_pred eEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeEEEEeEEEEeeCCCCceEEecC--------------CCCce
Q 012057 350 DLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACS--------------DTVPC 415 (472)
Q Consensus 350 nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~~~~~~~~~i~~~--------------~~~~~ 415 (472)
||+|+|+++.+..++++|+++.+ ..+.++||+|+||.+..... |+.+... ....+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G---------g~G~v~nItf~nI~m~nV~~--pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG---------GSGYARMITFNGITLDNVEN--PIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC---------CCeEEEEEEEEeEEecCccc--eEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999998742 34689999999999876432 5554321 12468
Q ss_pred eeEEEEEEEEEcCCCCccCCce------eecceeeeeeeecC
Q 012057 416 TKITMAEVELLPYEGQLLDDPF------CWNAYGTQETLTIP 451 (472)
Q Consensus 416 ~~i~~~ni~~~~~~~~~~~~~~------c~~~~g~~~~~~~~ 451 (472)
+||+|+||+.+..... ...+. |.|..-....++.+
T Consensus 320 snI~f~NI~GTs~~~~-ai~l~Cs~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 320 SKVVFSNFIGTSKSEY-GVDFRCSERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EeEEEEeEEEEeCccc-eEEEEeCCCCCeeeEEEEEEEEEec
Confidence 9999999998765432 22344 55555555555544
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.85 E-value=3.7e-19 Score=183.00 Aligned_cols=224 Identities=19% Similarity=0.292 Sum_probs=174.1
Q ss_pred CCceEEEeCceEeCCCCCCCCCCC--------CCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCC
Q 012057 132 KPGLVFQLDGVLMPPDGPDTWPKA--------DSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSG 203 (472)
Q Consensus 132 ~s~v~l~~~Gtl~~~~~~~~~~~~--------~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g 203 (472)
..+++|.+.|+|.+.. ...|+.. ..+..++.|.+++|+.|+|.-.++ ..+|
T Consensus 121 ~~ni~I~G~G~IDG~G-~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~n---Sp~w----------------- 179 (404)
T PLN02188 121 VNGLTLTGGGTFDGQG-AAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN---SKFF----------------- 179 (404)
T ss_pred eeeEEEEeeEEEeCCC-cccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEc---CCCe-----------------
Confidence 3578888888998754 3455422 124567899999999999943333 2232
Q ss_pred CCCCCeEEEEEeeeeEEEeceEEecCC----CCeeeeeccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEec
Q 012057 204 PCDSPALIRFFMSSNLVVSGLTIQNSP----QFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISN 278 (472)
Q Consensus 204 ~~~rp~~i~~~~~~nv~I~~v~i~ns~----~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~ 278 (472)
.+++..|++++|++++|.+.. ..+|+++.|+||+|+|++|.+. +|+|.+. +++||+|+||....
T Consensus 180 ------~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~ 248 (404)
T PLN02188 180 ------HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGP 248 (404)
T ss_pred ------EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcC
Confidence 589999999999999998632 2349999999999999999984 5899997 67899999999977
Q ss_pred CCceEEeCC--------CceeEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecC------
Q 012057 279 GDDCISIGT--------GCSDVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQG------ 343 (472)
Q Consensus 279 gDD~I~i~s--------~s~nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g------ 343 (472)
++ +|++++ +.+||+|+||++.++ +|++|++.......+.++||+|+|++|.+...+|.|.....
T Consensus 249 gh-GisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~ 327 (404)
T PLN02188 249 GH-GISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCE 327 (404)
T ss_pred CC-cEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCC
Confidence 74 699988 258999999999985 79999986432235789999999999999999998875311
Q ss_pred ----CCceeeeEEEEeEEEEcc-CeeEEEEeeccCCccccCCCCceEEEeEEEEeEEEEee
Q 012057 344 ----GTGCVSDLSFENIQMENV-RNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYD 399 (472)
Q Consensus 344 ----~~g~v~nI~f~Ni~~~~v-~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~~ 399 (472)
....|+||+|+||+.+.. ..++.|.. .+..+++||+|+||+++..
T Consensus 328 ~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~c-----------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 328 SKYPSGVTLSDIYFKNIRGTSSSQVAVLLKC-----------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred cCCCCCcEEEeEEEEEEEEEecCceEEEEEE-----------CCCCCEeeEEEEeeEEEec
Confidence 125699999999999875 34665642 2456799999999998764
No 13
>PLN02793 Probable polygalacturonase
Probab=99.85 E-value=3.8e-19 Score=184.96 Aligned_cols=222 Identities=19% Similarity=0.277 Sum_probs=174.8
Q ss_pred CCceEEEeCceEeCCCCCCCCCCC---------CCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCC
Q 012057 132 KPGLVFQLDGVLMPPDGPDTWPKA---------DSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSS 202 (472)
Q Consensus 132 ~s~v~l~~~Gtl~~~~~~~~~~~~---------~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~ 202 (472)
..+++|.+.|+|.+. +...|... ..+..++.|.+++|++|+|.-.++. ..|
T Consensus 142 ~~ni~ItG~G~IDG~-G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---p~~---------------- 201 (443)
T PLN02793 142 VNHLTVEGGGTVNGM-GHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---QQM---------------- 201 (443)
T ss_pred CceEEEEeceEEECC-CcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---CCe----------------
Confidence 568888888899874 34445321 1245688999999999999554442 122
Q ss_pred CCCCCCeEEEEEeeeeEEEeceEEecCC----CCeeeeeccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEe
Q 012057 203 GPCDSPALIRFFMSSNLVVSGLTIQNSP----QFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMIS 277 (472)
Q Consensus 203 g~~~rp~~i~~~~~~nv~I~~v~i~ns~----~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~ 277 (472)
.+.+..|+|++|++++|.+.. ..+|+++.|+||+|+|++|++. +|+|.+. +++||+|+||...
T Consensus 202 -------~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~ 269 (443)
T PLN02793 202 -------HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACG 269 (443)
T ss_pred -------EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEe
Confidence 588999999999999998742 2359999999999999999984 5899997 7999999999998
Q ss_pred cCCceEEeCCC--------ceeEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecC-----
Q 012057 278 NGDDCISIGTG--------CSDVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQG----- 343 (472)
Q Consensus 278 ~gDD~I~i~s~--------s~nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g----- 343 (472)
.|+ +|+|++. .+||+|+||++.++ +|++|++... ..+.++||+|+|++|.+..++|.|.....
T Consensus 270 ~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~ 346 (443)
T PLN02793 270 PGH-GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKP 346 (443)
T ss_pred CCc-cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCC
Confidence 876 6999982 58999999999985 7999998632 35789999999999999999999976531
Q ss_pred -----CCceeeeEEEEeEEEEcc-CeeEEEEeeccCCccccCCCCceEEEeEEEEeEEEEee
Q 012057 344 -----GTGCVSDLSFENIQMENV-RNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYD 399 (472)
Q Consensus 344 -----~~g~v~nI~f~Ni~~~~v-~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~~ 399 (472)
....|+||+|+||+.+.. ..++.|.. .+..+++||+|+||+++..
T Consensus 347 ~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~c-----------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 347 CANQTSAVKVENISFVHIKGTSATEEAIKFAC-----------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred CCCCCCCeEEEeEEEEEEEEEEcccccEEEEe-----------CCCCCEeeEEEEeeEEEec
Confidence 113689999999998875 34666652 2455799999999998754
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.85 E-value=6.4e-19 Score=182.48 Aligned_cols=196 Identities=18% Similarity=0.291 Sum_probs=158.4
Q ss_pred eEEEEEeeeeEEEec---eEEecCC--CC-----------------eeeeeccccEEEEeEEEeCCCCCCCCCceeeecc
Q 012057 209 ALIRFFMSSNLVVSG---LTIQNSP--QF-----------------HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENT 266 (472)
Q Consensus 209 ~~i~~~~~~nv~I~~---v~i~ns~--~~-----------------~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s 266 (472)
.+|.|.+.+|++|.| =+|.... +| .+.+..|+|++|+++++.+++.+ .+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w----~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI----QISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE----EEEEEce
Confidence 468889999999988 2332111 11 36789999999999999998765 4899999
Q ss_pred eeEEEEceEEec-----CCceEEeCCCceeEEEEeeeecCCC-cceecccCccCCCCcEEEEEEEeEEEecCCceEEEEe
Q 012057 267 KSVGIYNSMISN-----GDDCISIGTGCSDVDIADVTCGPSH-GISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKT 340 (472)
Q Consensus 267 ~nV~I~n~~i~~-----gDD~I~i~s~s~nI~I~n~~~~~~~-gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~ 340 (472)
+||+|+|..|.+ +.|||.+.+ ++||+|+||++..++ .|+|++ +.+||+|+||++... +||.|++
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~G-HGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGPG-HGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEECC-CCEEECc
Confidence 999999999986 679999988 999999999999975 699976 358999999999865 8999998
Q ss_pred ecCC--CceeeeEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeEEEEeEEEEeeCCCCceEEecC--------
Q 012057 341 WQGG--TGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFACS-------- 410 (472)
Q Consensus 341 ~~g~--~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~~~~~~~~~i~~~-------- 410 (472)
...+ .+.|+||+|+|+++.+..++++|+.+.+ ..+.++||+|+||++..... |+.|...
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G---------g~G~v~nI~f~ni~m~~V~~--pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG---------GSGTASNIIFQNIQMENVKN--PIIIDQDYCDKSKCT 362 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCC---------CCeEEEEEEEEeEEEEcccc--cEEEEeeccCCCCCC
Confidence 6432 4689999999999999999999998732 45799999999999886532 5655421
Q ss_pred ---CCCceeeEEEEEEEEEcCC
Q 012057 411 ---DTVPCTKITMAEVELLPYE 429 (472)
Q Consensus 411 ---~~~~~~~i~~~ni~~~~~~ 429 (472)
....++||+|+||+.+...
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecC
Confidence 1245899999999998754
No 15
>PLN03010 polygalacturonase
Probab=99.85 E-value=7.2e-19 Score=180.53 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=180.7
Q ss_pred cCcEEEeeeeeecCCC-cccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecC---CCC-eeeeeccccE
Q 012057 168 DDMTFTGKGTIEGNGQ-PWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNS---PQF-HMKFDGCEGV 242 (472)
Q Consensus 168 ~nvtI~G~GtIdG~g~-~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns---~~~-~i~~~~~~nv 242 (472)
.+++|+=.|+|-+... ..|... ....++.|.+.+|++|.|--..+. .+| .+.+..|+|+
T Consensus 105 ~~v~l~l~G~l~~~~d~~~w~~~----------------~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv 168 (409)
T PLN03010 105 TSIKVQLDGIIVAPSNIVAWSNP----------------KSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNL 168 (409)
T ss_pred CcEEEEEccEEEccCChhhccCC----------------CCcceEEEecccccEEeeceEEeCCCccccceEEEEeecCe
Confidence 5677776677765443 234210 122478899999999998666654 344 3889999999
Q ss_pred EEEeEEEeCCCCCCCCCceeeecceeEEEEceEEec-----CCceEEeCCCceeEEEEeeeecCC-CcceecccCccCCC
Q 012057 243 MIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISN-----GDDCISIGTGCSDVDIADVTCGPS-HGISIGSLGAHYSQ 316 (472)
Q Consensus 243 ~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~-----gDD~I~i~s~s~nI~I~n~~~~~~-~gi~iGs~~~~~~~ 316 (472)
+|+++++.+++.+ .+++.+|++|+|+|..|.+ ..|||.+.+ ++||+|+||++..+ +.|+|++-
T Consensus 169 ~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg------ 237 (409)
T PLN03010 169 TINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPNTDGIDISY-STNINIFDSTIQTGDDCIAINSG------ 237 (409)
T ss_pred EEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCCCCceeeec-cceEEEEeeEEecCCCeEEecCC------
Confidence 9999999998765 3889999999999999986 568999987 89999999999997 46999873
Q ss_pred CcEEEEEEEeEEEecCCceEEEEeecC--CCceeeeEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeEEEEeE
Q 012057 317 ACVSNITVRNAIIRESDNGLRIKTWQG--GTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNI 394 (472)
Q Consensus 317 ~~i~nI~i~n~~i~~~~~gi~I~~~~g--~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI 394 (472)
..++.|+++.+... +||.|++... ....|+||+|+|+++.+..++++|+.+.+ ..+.++||+|+||
T Consensus 238 --s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G---------~~G~v~nItf~nI 305 (409)
T PLN03010 238 --SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG---------GQGYARNISFENI 305 (409)
T ss_pred --CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC---------CCEEEEEeEEEeE
Confidence 25788888888765 8999998633 23569999999999999999999998743 3569999999999
Q ss_pred EEEeeCCCCceEEec---C---------CCCceeeEEEEEEEEEcCCCCccCCce------eecceeeeeeee
Q 012057 395 KGTYDVRTPPIHFAC---S---------DTVPCTKITMAEVELLPYEGQLLDDPF------CWNAYGTQETLT 449 (472)
Q Consensus 395 ~~t~~~~~~~~~i~~---~---------~~~~~~~i~~~ni~~~~~~~~~~~~~~------c~~~~g~~~~~~ 449 (472)
++.... .|+.+.. . ....++||+|+||+.+..... +..+. |.|..-....++
T Consensus 306 ~m~~v~--~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~-~i~l~Cs~~~pC~ni~~~~v~l~ 375 (409)
T PLN03010 306 TLINTK--NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNEN-AITLKCSAITHCKDVVMDDIDVT 375 (409)
T ss_pred EEecCC--ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCc-cEEEEeCCCCCEeceEEEEEEEE
Confidence 988743 2565542 1 124689999999999865432 33344 555555555555
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.83 E-value=5.8e-19 Score=178.25 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=168.0
Q ss_pred ceEEEeCceEeCCCCCCCCCCC-------CCCceEEEEEeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCC
Q 012057 134 GLVFQLDGVLMPPDGPDTWPKA-------DSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCD 206 (472)
Q Consensus 134 ~v~l~~~Gtl~~~~~~~~~~~~-------~~~~~~i~~~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~ 206 (472)
++.|.+.|+|.+.. ...|+.. ..+..++.|.+++|++|+|.-..+ ...|
T Consensus 61 ni~i~G~G~IDG~G-~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~n---sp~w-------------------- 116 (326)
T PF00295_consen 61 NITITGKGTIDGNG-QAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRN---SPFW-------------------- 116 (326)
T ss_dssp EEECTTSSEEE--G-GGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES----SSE--------------------
T ss_pred EEEecCCceEcCch-hhhhccccccccccccccceeeeeeecceEEEeeEecC---CCee--------------------
Confidence 45555556776532 2344322 235678999999999999944333 2222
Q ss_pred CCeEEEEEeeeeEEEeceEEecCCC----CeeeeeccccEEEEeEEEeCCCCCCCCCceeeecce-eEEEEceEEecCCc
Q 012057 207 SPALIRFFMSSNLVVSGLTIQNSPQ----FHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTK-SVGIYNSMISNGDD 281 (472)
Q Consensus 207 rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~-nV~I~n~~i~~gDD 281 (472)
.+.+..|+|++|++++|.+... .+|++..|+||+|+|+.|.+. .|+|.+.+.+ +|+|+||.+..++
T Consensus 117 ---~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~gh- 187 (326)
T PF00295_consen 117 ---HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGGH- 187 (326)
T ss_dssp ---SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESSS-
T ss_pred ---EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccc-----cCcccccccccceEEEeEEEeccc-
Confidence 4789999999999999987543 359999999999999999984 5899999766 9999999998765
Q ss_pred eEEeCC---C-----ceeEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecC---------
Q 012057 282 CISIGT---G-----CSDVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQG--------- 343 (472)
Q Consensus 282 ~I~i~s---~-----s~nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g--------- 343 (472)
++++++ + .+||+++||++.++ +|++|++.. ...+.++||+|+|+++++..++|.|.....
T Consensus 188 GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~ 265 (326)
T PF00295_consen 188 GISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPP 265 (326)
T ss_dssp EEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSS
T ss_pred cceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCccc
Confidence 498876 2 37999999999985 789998853 346899999999999999999998875421
Q ss_pred CCceeeeEEEEeEEEEccC-eeEEEEeeccCCccccCCCCceEEEeEEEEeEEEEe
Q 012057 344 GTGCVSDLSFENIQMENVR-NCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTY 398 (472)
Q Consensus 344 ~~g~v~nI~f~Ni~~~~v~-~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~ 398 (472)
....|+||+|+||+..... .++.|... +..+++||+|+||+++.
T Consensus 266 ~~~~i~nI~~~nitg~~~~~~~i~i~~~-----------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 266 SGVSISNITFRNITGTSAGSSAISIDCS-----------PGSPCSNITFENVNITG 310 (326)
T ss_dssp SSSEEEEEEEEEEEEEESTSEEEEEE-B-----------TTSSEEEEEEEEEEEES
T ss_pred CCceEEEEEEEeeEEEeccceEEEEEEC-----------CcCcEEeEEEEeEEEEc
Confidence 1247999999999998776 57776532 34579999999999877
No 17
>PLN02155 polygalacturonase
Probab=99.83 E-value=6.3e-18 Score=173.24 Aligned_cols=218 Identities=14% Similarity=0.199 Sum_probs=166.0
Q ss_pred eEEEEEeeeeEEEeceEEecC--CCC--------------eeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEE
Q 012057 209 ALIRFFMSSNLVVSGLTIQNS--PQF--------------HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIY 272 (472)
Q Consensus 209 ~~i~~~~~~nv~I~~v~i~ns--~~~--------------~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~ 272 (472)
.++.|.+.+++.|.+=+|... .+| .+.+..|++++|+++++.+++.+ -+++..|++|+|+
T Consensus 107 ~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w----~i~~~~~~nv~i~ 182 (394)
T PLN02155 107 YWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVS----HMTLNGCTNVVVR 182 (394)
T ss_pred eeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCe----EEEEECeeeEEEE
Confidence 368888888888887333211 111 27889999999999999998765 3888999999999
Q ss_pred ceEEec-----CCceEEeCCCceeEEEEeeeecCCC-cceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecC--C
Q 012057 273 NSMISN-----GDDCISIGTGCSDVDIADVTCGPSH-GISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQG--G 344 (472)
Q Consensus 273 n~~i~~-----gDD~I~i~s~s~nI~I~n~~~~~~~-gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g--~ 344 (472)
|..|.+ +.|||.+.+ ++||+|+||++..++ .|+|++ +.+||+|+|+++... +||.|++... .
T Consensus 183 ~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~--------gs~nI~I~n~~c~~G-hGisIGS~g~~~~ 252 (394)
T PLN02155 183 NVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGP--------GTRNFLITKLACGPG-HGVSIGSLAKELN 252 (394)
T ss_pred EEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCC--------CCceEEEEEEEEECC-ceEEeccccccCC
Confidence 999986 358999987 899999999999974 699975 358999999999975 8999998632 3
Q ss_pred CceeeeEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeEEEEeEEEEeeCCCCceEEec---C---------CC
Q 012057 345 TGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVRTPPIHFAC---S---------DT 412 (472)
Q Consensus 345 ~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t~~~~~~~~~i~~---~---------~~ 412 (472)
.+.|+||+++|+++.+..++++||.+.. ...+.++||+|+||.+..... |+.+.. . ..
T Consensus 253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~--------~~gG~v~nI~f~ni~m~~v~~--pI~i~q~Y~~~~~~~~~~~s~ 322 (394)
T PLN02155 253 EDGVENVTVSSSVFTGSQNGVRIKSWAR--------PSTGFVRNVFFQDLVMKNVEN--PIIIDQNYCPTHEGCPNEYSG 322 (394)
T ss_pred CCcEEEEEEEeeEEeCCCcEEEEEEecC--------CCCEEEEEEEEEeEEEcCccc--cEEEEecccCCCCCCcCCCCC
Confidence 5789999999999999999999998632 135789999999999876532 565532 1 12
Q ss_pred CceeeEEEEEEEEEcCCCCccCCce------eecceeeeeeeecC
Q 012057 413 VPCTKITMAEVELLPYEGQLLDDPF------CWNAYGTQETLTIP 451 (472)
Q Consensus 413 ~~~~~i~~~ni~~~~~~~~~~~~~~------c~~~~g~~~~~~~~ 451 (472)
..++||+|+||+.+..... +..+. |.|..-....++.+
T Consensus 323 v~i~~It~~ni~gt~~~~~-a~~l~c~~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 323 VKISQVTYKNIQGTSATQE-AMKLVCSKSSPCTGITLQDIKLTYN 366 (394)
T ss_pred eEEEEEEEEeeEEEecCCc-eEEEEeCCCCCEEEEEEEeeEEEec
Confidence 4689999999999876321 22233 55555555555533
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.71 E-value=1.5e-14 Score=148.49 Aligned_cols=276 Identities=17% Similarity=0.186 Sum_probs=150.8
Q ss_pred cEEEecCCcEEEEee---eeecCCCCCc-eEEEeC-ceE-eCCCCCCCCCCCCCCceEEEEEeecCcEEEeeeeeecCCC
Q 012057 110 GVVLAPSDYVFKITS---TIFSGPCKPG-LVFQLD-GVL-MPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQ 183 (472)
Q Consensus 110 ~~V~iP~G~ty~i~~---~~l~gp~~s~-v~l~~~-Gtl-~~~~~~~~~~~~~~~~~~i~~~~~~nvtI~G~GtIdG~g~ 183 (472)
.++||++| +|.++. +.| .++ -+++++ |.+ ++. +.+....+|+.|.|.|+|.|...
T Consensus 233 ~~lYF~PG-Vy~ig~~~~l~L----~sn~~~VYlApGAyVkGA--------------f~~~~~~~nv~i~G~GVLSGe~Y 293 (582)
T PF03718_consen 233 DTLYFKPG-VYWIGSDYHLRL----PSNTKWVYLAPGAYVKGA--------------FEYTDTQQNVKITGRGVLSGEQY 293 (582)
T ss_dssp SEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEES---------------EEE---SSEEEEESSSEEE-TTS
T ss_pred ceEEeCCc-eEEeCCCccEEE----CCCccEEEEcCCcEEEEE--------------EEEccCCceEEEEeeEEEcCcce
Confidence 58999999 899876 556 556 478887 543 332 23334789999999999998766
Q ss_pred cccCCCCCCCCCCCCCCCCC----CCCCCeEEEEE---eeeeEEEeceEEecCCCCeeeeeccc----cEEEEeEEEeCC
Q 012057 184 PWWDLPCKPHRGPNGSTSSG----PCDSPALIRFF---MSSNLVVSGLTIQNSPQFHMKFDGCE----GVMIDKLSISSP 252 (472)
Q Consensus 184 ~~w~~~~~~~~g~~g~~~~g----~~~rp~~i~~~---~~~nv~I~~v~i~ns~~~~i~~~~~~----nv~I~~~~i~~~ 252 (472)
.|-.... .+.....| +..+-+++.+. .+.++.++|++|.++|.|.+.+.+-+ +..|+|.++-..
T Consensus 294 vy~A~~~-----e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGa 368 (582)
T PF03718_consen 294 VYEADTE-----ESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGA 368 (582)
T ss_dssp -TTBBCC-----CTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE--
T ss_pred eEeccCC-----CCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeee
Confidence 6522111 01000011 11122355543 45589999999999999999999655 489999999875
Q ss_pred CCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCC-Cc--ceecccCccCCCCcEEEEEEEeEEE
Q 012057 253 KLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPS-HG--ISIGSLGAHYSQACVSNITVRNAII 329 (472)
Q Consensus 253 ~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~-~g--i~iGs~~~~~~~~~i~nI~i~n~~i 329 (472)
. ..++|||.+.. +-+|+||+++..||+|.+.. +++.|+||+++.. +| |.+|.. ...+++|.|+|+.+
T Consensus 369 W-~~qtDGi~ly~--nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~I 438 (582)
T PF03718_consen 369 W-YFQTDGIELYP--NSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDI 438 (582)
T ss_dssp --CTT----B--T--T-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEE
T ss_pred E-EeccCCccccC--CCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEE
Confidence 4 45999999984 56779999999999998776 7999999999984 33 666653 45689999999999
Q ss_pred ecCC---------ceEEEEeecC---C-------CceeeeEEEEeEEEEccCe-eEEEEeeccCCccccCCCCceEEEeE
Q 012057 330 RESD---------NGLRIKTWQG---G-------TGCVSDLSFENIQMENVRN-CINIDQYYCLSKECLNQTSAVFVTGI 389 (472)
Q Consensus 330 ~~~~---------~gi~I~~~~g---~-------~g~v~nI~f~Ni~~~~v~~-~i~I~~~~~~~~~~~~~~~~~~i~nI 389 (472)
..++ .+|.-.+... + .-.|++++|+|+++++.-. .+.|.... ......|+|+
T Consensus 439 Ih~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq--------n~~nl~ikN~ 510 (582)
T PF03718_consen 439 IHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ--------NYDNLVIKNV 510 (582)
T ss_dssp EE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE--------EEEEEEEEEE
T ss_pred EeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC--------CCcceEEEEe
Confidence 8762 3443322111 0 1258999999999998755 45565321 0112334444
Q ss_pred EEEeEEEEeeCCCCceEEec---C---CCCceeeEEEEEEEEEcC
Q 012057 390 TYRNIKGTYDVRTPPIHFAC---S---DTVPCTKITMAEVELLPY 428 (472)
Q Consensus 390 ~f~nI~~t~~~~~~~~~i~~---~---~~~~~~~i~~~ni~~~~~ 428 (472)
.|+...+... ......+.. . ......+|.|+|.++..+
T Consensus 511 ~~~~w~~~~~-~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 511 HFESWNGLDI-TSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp EECEET-CGC-STT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred ecccccCccc-ccceeeccccccccccccccccceEEEeEEECCE
Confidence 4443322210 000111111 1 123478999999998654
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.60 E-value=8e-14 Score=139.89 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=64.1
Q ss_pred eeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCC---CCCCCceeeecceeEEEEceEEecC-CceEEeCCCce
Q 012057 215 MSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKL---SPNTDGIHIENTKSVGIYNSMISNG-DDCISIGTGCS 290 (472)
Q Consensus 215 ~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~---~~n~DGI~i~~s~nV~I~n~~i~~g-DD~I~i~s~s~ 290 (472)
.+++++|+++++.++..++|.+..|++++|+++++..... ....+||.+..|++++|++|.++.. |++|.++. ++
T Consensus 61 ~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~ 139 (314)
T TIGR03805 61 TSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQ 139 (314)
T ss_pred EeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CC
Confidence 4556666666666665566666666666666666642110 1134566666666666666666653 33566554 55
Q ss_pred eEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEe
Q 012057 291 DVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKT 340 (472)
Q Consensus 291 nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~ 340 (472)
+++|+||+++.. .||.+.. ..++.|+|+++.+...|+.+-.
T Consensus 140 ~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~ 181 (314)
T TIGR03805 140 NIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFD 181 (314)
T ss_pred CeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEee
Confidence 666666666553 3555521 2355566666665555655533
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=2.9e-11 Score=127.33 Aligned_cols=152 Identities=22% Similarity=0.304 Sum_probs=125.0
Q ss_pred CCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCC----ceEEeCCCceeEEEEeeeecCCC-cc
Q 012057 231 QFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGD----DCISIGTGCSDVDIADVTCGPSH-GI 305 (472)
Q Consensus 231 ~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gD----D~I~i~s~s~nI~I~n~~~~~~~-gi 305 (472)
...+.+..|+||++++++|.+++. -++++..|++++++|..|.+.+ |++.+.+ |+|++|++|+|..++ .|
T Consensus 238 p~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I 312 (542)
T COG5434 238 PRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCI 312 (542)
T ss_pred CceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceE
Confidence 345889999999999999999876 3699999999999999999854 5999988 999999999999974 58
Q ss_pred eecccCccC---CCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCeeEEEEeeccCCccccCCCC
Q 012057 306 SIGSLGAHY---SQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTS 382 (472)
Q Consensus 306 ~iGs~~~~~---~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~ 382 (472)
.++|-.... -.+..++|.|+||.|.....++.+.++.+ |.|+||++||+.|.+..++++|+.... .
T Consensus 313 ~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~--ggv~ni~ved~~~~~~d~GLRikt~~~---------~ 381 (542)
T COG5434 313 AIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG--GGVQNITVEDCVMDNTDRGLRIKTNDG---------R 381 (542)
T ss_pred EeecccCCcccccccccccEEEecceecccccceEeeeecC--CceeEEEEEeeeeccCcceeeeeeecc---------c
Confidence 887732111 23455999999999998766788878754 489999999999999999999997633 3
Q ss_pred ceEEEeEEEEeEEEEe
Q 012057 383 AVFVTGITYRNIKGTY 398 (472)
Q Consensus 383 ~~~i~nI~f~nI~~t~ 398 (472)
.+.++||+|+++.+..
T Consensus 382 gG~v~nI~~~~~~~~n 397 (542)
T COG5434 382 GGGVRNIVFEDNKMRN 397 (542)
T ss_pred ceeEEEEEEecccccC
Confidence 3788999999888544
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.94 E-value=2e-07 Score=93.83 Aligned_cols=228 Identities=17% Similarity=0.261 Sum_probs=162.6
Q ss_pred HHHHHHHHhhcCCcEEEecCCcEEEE-eeeeecCCCCCceEEEeCc---e-EeCCCCCCCCCCCCCCceEEEEEeecCcE
Q 012057 97 FRAAWKAACAVEAGVVLAPSDYVFKI-TSTIFSGPCKPGLVFQLDG---V-LMPPDGPDTWPKADSRKQWLVFYKLDDMT 171 (472)
Q Consensus 97 iq~Ai~~a~~~~g~~V~iP~G~ty~i-~~~~l~gp~~s~v~l~~~G---t-l~~~~~~~~~~~~~~~~~~i~~~~~~nvt 171 (472)
||+|+++| +.|++|++|+| +|.+ .++.+. +++++|..+| + |.+.... .... .....+++|+
T Consensus 1 iQ~Ai~~A--~~GDtI~l~~G-~Y~~~~~l~I~---~~~Iti~G~g~~~tvid~~~~~-------~~~~-~i~v~a~~Vt 66 (314)
T TIGR03805 1 LQEALIAA--QPGDTIVLPEG-VFQFDRTLSLD---ADGVTIRGAGMDETILDFSGQV-------GGAE-GLLVTSDDVT 66 (314)
T ss_pred CHhHHhhC--CCCCEEEECCC-EEEcceeEEEe---CCCeEEEecCCCccEEecccCC-------CCCc-eEEEEeCCeE
Confidence 69999965 34899999999 8987 566664 4789999876 3 3332211 0111 2244679999
Q ss_pred EEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEe-------cCCCCeeeeeccccEEE
Q 012057 172 FTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQ-------NSPQFHMKFDGCEGVMI 244 (472)
Q Consensus 172 I~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~-------ns~~~~i~~~~~~nv~I 244 (472)
|++- +|...+ ...|.+..+++++|+++++. ....++|.+..|++++|
T Consensus 67 I~~l-tI~~~~-------------------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I 120 (314)
T TIGR03805 67 LSDL-AVENTK-------------------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLV 120 (314)
T ss_pred EEee-EEEcCC-------------------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEE
Confidence 9993 343211 12577889999999999996 23467899999999999
Q ss_pred EeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecC-CCcceecccCccCCCCcEEEEE
Q 012057 245 DKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGP-SHGISIGSLGAHYSQACVSNIT 323 (472)
Q Consensus 245 ~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~-~~gi~iGs~~~~~~~~~i~nI~ 323 (472)
+++++... ..+||.+..|++++|+||.+.....||.+.. +.++.|+|+++.. ..||.+...... .....++++
T Consensus 121 ~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~ 194 (314)
T TIGR03805 121 EDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVR 194 (314)
T ss_pred ECCEEECC----CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceE
Confidence 99999874 2359999999999999999999999999986 8899999999987 467877443211 123457999
Q ss_pred EEeEEEecCCc-eEE-----EEeecCCCcee----eeEEEEeEEEEccCe-eEEEEee
Q 012057 324 VRNAIIRESDN-GLR-----IKTWQGGTGCV----SDLSFENIQMENVRN-CINIDQY 370 (472)
Q Consensus 324 i~n~~i~~~~~-gi~-----I~~~~g~~g~v----~nI~f~Ni~~~~v~~-~i~I~~~ 370 (472)
|+++++.+... .+. +...+.+.|.+ ++++|+|.++.+... ++.+..+
T Consensus 195 v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~ 252 (314)
T TIGR03805 195 VFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSY 252 (314)
T ss_pred EECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEec
Confidence 99999986632 111 11123344544 899999999988765 5666543
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.78 E-value=4.1e-08 Score=93.30 Aligned_cols=126 Identities=21% Similarity=0.321 Sum_probs=90.1
Q ss_pred EEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCcee-----------eecceeEEEEceEEecCC
Q 012057 212 RFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIH-----------IENTKSVGIYNSMISNGD 280 (472)
Q Consensus 212 ~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~-----------i~~s~nV~I~n~~i~~gD 280 (472)
.|+.|++++++++++.+++.. +..|+++.++|+.+.+.+.+.+..-|. +++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 467889999999999887654 566888888888886655433333232 336899999999998876
Q ss_pred ceEEeCCCceeEEEEeeeecCCCcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEc
Q 012057 281 DCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMEN 360 (472)
Q Consensus 281 D~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~ 360 (472)
. +.. ++||+|+|+.+.+. .+ ++ ..+|+++.||++.+. +|+- +++|++++|++|.+
T Consensus 170 A---FWn-~eNVtVyDS~i~GE---YL---gW-----~SkNltliNC~I~g~-QpLC---------Y~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 170 A---FWN-CENVTVYDSVINGE---YL---GW-----NSKNLTLINCTIEGT-QPLC---------YCDNLVLENCTMID 224 (277)
T ss_pred c---ccc-CCceEEEcceEeee---EE---EE-----EcCCeEEEEeEEecc-CccE---------eecceEEeCcEeec
Confidence 3 333 88999999887532 22 12 237999999999877 5653 67888999999987
Q ss_pred cCeeE
Q 012057 361 VRNCI 365 (472)
Q Consensus 361 v~~~i 365 (472)
.+-++
T Consensus 225 tdlaF 229 (277)
T PF12541_consen 225 TDLAF 229 (277)
T ss_pred ceeee
Confidence 66544
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.68 E-value=3.6e-07 Score=81.37 Aligned_cols=138 Identities=25% Similarity=0.371 Sum_probs=99.9
Q ss_pred EEEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCce
Q 012057 211 IRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCS 290 (472)
Q Consensus 211 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~ 290 (472)
|.+.+..+++|++++|.+....++.+..+..++|++++|.. ...||.+....+++|++|.+.....++.+. ++.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 67778889999999999999999999999999999999998 347899999999999999999877777777 488
Q ss_pred eEEEEeeeecCC-C-cceecccCccCCCCcEEEEEEEeEEEecCC-ceEEEEeecCCCceeeeEEEEeEEEEccC-eeEE
Q 012057 291 DVDIADVTCGPS-H-GISIGSLGAHYSQACVSNITVRNAIIRESD-NGLRIKTWQGGTGCVSDLSFENIQMENVR-NCIN 366 (472)
Q Consensus 291 nI~I~n~~~~~~-~-gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~-~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~-~~i~ 366 (472)
++.|++|.+... . ||.+.. ..++++|+++++.+.. .|+.+.... -.+++|++.++.+.. ++|.
T Consensus 77 ~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp S-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEEE
T ss_pred CceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeEE
Confidence 999999999984 3 787742 1357999999999986 688876532 236777888887654 5665
Q ss_pred E
Q 012057 367 I 367 (472)
Q Consensus 367 I 367 (472)
+
T Consensus 144 ~ 144 (158)
T PF13229_consen 144 L 144 (158)
T ss_dssp -
T ss_pred E
Confidence 4
No 24
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=4.2e-06 Score=81.10 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=94.6
Q ss_pred EEEEeeeeEEEeceEEe-cCCCCeeeeeccccEEEEeEEEeCCCCC-CCCCceee-ecceeEEEEceEEec---------
Q 012057 211 IRFFMSSNLVVSGLTIQ-NSPQFHMKFDGCEGVMIDKLSISSPKLS-PNTDGIHI-ENTKSVGIYNSMISN--------- 278 (472)
Q Consensus 211 i~~~~~~nv~I~~v~i~-ns~~~~i~~~~~~nv~I~~~~i~~~~~~-~n~DGI~i-~~s~nV~I~n~~i~~--------- 278 (472)
+.+.-+.|.+|.|+--. .--.|++.+...+||.|+|++|+..+.+ ++-|+|.+ .+++||+|++|.+..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 45556778888776521 1235678888899999999999975532 33599999 789999999999987
Q ss_pred CCceEEeCCCceeEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecCC
Q 012057 279 GDDCISIGTGCSDVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRESD 333 (472)
Q Consensus 279 gDD~I~i~s~s~nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~ 333 (472)
+|..+.|+.++.+|+|++|++... .++-+|+.-.....+.-.+|+++++.+++..
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 466778999999999999999985 5788887543233356678999999999874
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.53 E-value=5.8e-07 Score=85.57 Aligned_cols=99 Identities=19% Similarity=0.389 Sum_probs=75.9
Q ss_pred EEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeE
Q 012057 213 FFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDV 292 (472)
Q Consensus 213 ~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI 292 (472)
|.+|+|+.++++++.. .-.|++|+||.|+|.++.+.+ . +.+|+||+|+|+++.. =-++-.++|+
T Consensus 133 ~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sKD------A--FWn~eNVtVyDS~i~G----EYLgW~SkNl 196 (277)
T PF12541_consen 133 FMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSKD------A--FWNCENVTVYDSVING----EYLGWNSKNL 196 (277)
T ss_pred eeeccceEEeceEEeC----CEEeeceeeEEEEccEEeccc------c--cccCCceEEEcceEee----eEEEEEcCCe
Confidence 4455666666666543 245889999999999999853 2 4789999999999975 2233447999
Q ss_pred EEEeeeecCCCcceecccCccCCCCcEEEEEEEeEEEecCCceEEE
Q 012057 293 DIADVTCGPSHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRI 338 (472)
Q Consensus 293 ~I~n~~~~~~~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I 338 (472)
++.||++.+..|+.- ++|++++||++.+++.++.-
T Consensus 197 tliNC~I~g~QpLCY-----------~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 197 TLINCTIEGTQPLCY-----------CDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred EEEEeEEeccCccEe-----------ecceEEeCcEeecceeeeee
Confidence 999999998777554 48999999999998777654
No 26
>smart00656 Amb_all Amb_all domain.
Probab=98.50 E-value=8.1e-06 Score=76.25 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=77.4
Q ss_pred CeeeeeccccEEEEeEEEeCCCCC--CCCCceeeecceeEEEEceEEecC----------CceEEeCCCceeEEEEeeee
Q 012057 232 FHMKFDGCEGVMIDKLSISSPKLS--PNTDGIHIENTKSVGIYNSMISNG----------DDCISIGTGCSDVDIADVTC 299 (472)
Q Consensus 232 ~~i~~~~~~nv~I~~~~i~~~~~~--~n~DGI~i~~s~nV~I~n~~i~~g----------DD~I~i~s~s~nI~I~n~~~ 299 (472)
..+.+..++||.|++++|...... .+.|+|.+.++++|+|++|.+..+ |..+.++.++.+|+|++|+|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 346676788999999999975431 367999999999999999999986 45668888899999999999
Q ss_pred cCC-CcceecccCccCCCCcEEEEEEEeEEEecC
Q 012057 300 GPS-HGISIGSLGAHYSQACVSNITVRNAIIRES 332 (472)
Q Consensus 300 ~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~ 332 (472)
... .+..+|+.-... .....+|++.++.+.++
T Consensus 112 ~~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 774 468887632111 11245899999999875
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.49 E-value=4.4e-06 Score=85.99 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=99.3
Q ss_pred EEEEEeeeeEEEeceEEecCCC------CeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEec-CCce
Q 012057 210 LIRFFMSSNLVVSGLTIQNSPQ------FHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISN-GDDC 282 (472)
Q Consensus 210 ~i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~-gDD~ 282 (472)
++.-...++++|+|++|.++.. ..|.+..|++++|++++|..+. .-||++..|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 5556678899999999988752 2488899999999999999853 1478888887 5555555543 4555
Q ss_pred EEeCCCceeEEEEeeeecCC--Ccceeccc------------------------CccCCC---CcEEEEEEEeEEEecCC
Q 012057 283 ISIGTGCSDVDIADVTCGPS--HGISIGSL------------------------GAHYSQ---ACVSNITVRNAIIRESD 333 (472)
Q Consensus 283 I~i~s~s~nI~I~n~~~~~~--~gi~iGs~------------------------~~~~~~---~~i~nI~i~n~~i~~~~ 333 (472)
|.+.. +.+..|+++++... +||.|-.. ++++.+ -...+++|+++++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 66554 66777777777663 34544322 111100 02257888999999888
Q ss_pred -ceEEEEeecCCCceeeeEEEEeEEEEccCe-eEEEE
Q 012057 334 -NGLRIKTWQGGTGCVSDLSFENIQMENVRN-CINID 368 (472)
Q Consensus 334 -~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~-~i~I~ 368 (472)
.||++.+ .+|+.|++.+++++++ ++..+
T Consensus 262 ~dgI~~ns-------ss~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNS-------ASNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEc-------ccCcEEECcEeeeeeeeEEEEE
Confidence 7888864 3567777777777777 66543
No 28
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.41 E-value=2.7e-05 Score=74.92 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=39.0
Q ss_pred CceEEeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEE-EE-eeeeecCCCCCceEEEeCceEeC
Q 012057 75 DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVF-KI-TSTIFSGPCKPGLVFQLDGVLMP 145 (472)
Q Consensus 75 ~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty-~i-~~~~l~gp~~s~v~l~~~Gtl~~ 145 (472)
...+|+.||- ..|=.++|++|+.+ +.+|++|+|.+- .+ +++.+ +.+-+|.+.|.|.+
T Consensus 32 ~~~vni~dy~-----~~dwiasfkqaf~e-----~qtvvvpagl~cenint~ifi----p~gktl~v~g~l~g 90 (464)
T PRK10123 32 RQSVNINDYN-----PHDWIASFKQAFSE-----GQTVVVPAGLVCDNINTGIFI----PPGKTLHILGSLRG 90 (464)
T ss_pred CceeehhhcC-----cccHHHHHHHHhcc-----CcEEEecCccEecccccceEe----CCCCeEEEEEEeec
Confidence 4568999998 34567999999986 578999998422 11 22333 56667777776655
No 29
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.41 E-value=2.5e-06 Score=75.86 Aligned_cols=118 Identities=28% Similarity=0.367 Sum_probs=84.3
Q ss_pred EEEEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCc-eEEeCCC
Q 012057 210 LIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDD-CISIGTG 288 (472)
Q Consensus 210 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD-~I~i~s~ 288 (472)
.|.+..+..++|++.+|.+ ...++.+....++.+++++|.... .|+.+..+.+++|++|.+....+ +|.+...
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~ 98 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISNS 98 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCE
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEecc
Confidence 6888888889999999999 677899999999999999999843 68999999999999999988544 9988742
Q ss_pred ceeEEEEeeeecCC--CcceecccCccCCCCcEEEEEEEeEEEecCC-ceEEEEe
Q 012057 289 CSDVDIADVTCGPS--HGISIGSLGAHYSQACVSNITVRNAIIRESD-NGLRIKT 340 (472)
Q Consensus 289 s~nI~I~n~~~~~~--~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~-~gi~I~~ 340 (472)
+.+++|++|++... .|+.+... .-.+++|++|++.+.. .||.+..
T Consensus 99 ~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 99 SSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNGGNGIYLIS 146 (158)
T ss_dssp ECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECESSEEEE-TT
T ss_pred CCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCcceeEEEEC
Confidence 67999999999883 57777432 1347889999999875 5777643
No 30
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.35 E-value=5.8e-05 Score=78.69 Aligned_cols=245 Identities=16% Similarity=0.175 Sum_probs=127.2
Q ss_pred CcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCC------CCCCCC----CCC---ceEEE---EEeecCcEE
Q 012057 109 AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGP------DTWPKA----DSR---KQWLV---FYKLDDMTF 172 (472)
Q Consensus 109 g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~------~~~~~~----~~~---~~~i~---~~~~~nvtI 172 (472)
...||+-+| -|.-+.+.+.+- .+++.+.+.|+|-+..-. +.|... +.. -.++- ..+..++.+
T Consensus 256 ~~~VYlApG-AyVkGAf~~~~~-~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 256 TKWVYLAPG-AYVKGAFEYTDT-QQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp --EEEE-TT-EEEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred ccEEEEcCC-cEEEEEEEEccC-CceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 578999999 788777765421 678888899988764322 122210 000 01222 234556777
Q ss_pred EeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeee----eEEEeceEEecCCCCeee-eeccccEEEEeE
Q 012057 173 TGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSS----NLVVSGLTIQNSPQFHMK-FDGCEGVMIDKL 247 (472)
Q Consensus 173 ~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~----nv~I~~v~i~ns~~~~i~-~~~~~nv~I~~~ 247 (472)
+|. ||.. ..+| .+.+++.. +..|++.++..+=.|.-+ +.-+++-+|+||
T Consensus 334 ~Gi-TI~~--pP~~-----------------------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dc 387 (582)
T PF03718_consen 334 EGI-TIND--PPFH-----------------------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDC 387 (582)
T ss_dssp ES--EEE----SS------------------------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEE
T ss_pred Eee-EecC--CCcc-----------------------eEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeee
Confidence 773 3431 2222 34555433 578899998875444321 233688899999
Q ss_pred EEeCCCCCCCCCceeeecceeEEEEceEEecC--CceEEeCC---CceeEEEEeeeecC----------CCcceecccCc
Q 012057 248 SISSPKLSPNTDGIHIENTKSVGIYNSMISNG--DDCISIGT---GCSDVDIADVTCGP----------SHGISIGSLGA 312 (472)
Q Consensus 248 ~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~g--DD~I~i~s---~s~nI~I~n~~~~~----------~~gi~iGs~~~ 312 (472)
.|++ |.|+|.+.. .++.|+||.+... +-.|.++- ..+||.|+|+.+=. ..+|.- +...
T Consensus 388 F~h~-----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~-ss~~ 460 (582)
T PF03718_consen 388 FIHV-----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILG-SSPF 460 (582)
T ss_dssp EEEE-----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEE-E--B
T ss_pred EEEe-----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEe-cccc
Confidence 9998 679998877 5899999999873 33444443 25788888887521 112222 2111
Q ss_pred c---------CCCCcEEEEEEEeEEEecCCc-eEEEEeecCCCceeeeEEEEeEEEEccC-----e-eEEEEeeccCCcc
Q 012057 313 H---------YSQACVSNITVRNAIIRESDN-GLRIKTWQGGTGCVSDLSFENIQMENVR-----N-CINIDQYYCLSKE 376 (472)
Q Consensus 313 ~---------~~~~~i~nI~i~n~~i~~~~~-gi~I~~~~g~~g~v~nI~f~Ni~~~~v~-----~-~i~I~~~~~~~~~ 376 (472)
+ .....+++++|+|+++++.-. -++|...+ .-.|+.++|+.++.-. . --.++.++...
T Consensus 461 y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq----n~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~-- 534 (582)
T PF03718_consen 461 YDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ----NYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMA-- 534 (582)
T ss_dssp TTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE----EEEEEEEEEEEECEET-CGCSTT-EEE---CCTT--
T ss_pred cccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC----CCcceEEEEeecccccCcccccceeecccccccc--
Confidence 1 122356899999999999855 46887643 4567777777777321 1 11233333221
Q ss_pred ccCCCCceEEEeEEEEeEEEE
Q 012057 377 CLNQTSAVFVTGITYRNIKGT 397 (472)
Q Consensus 377 ~~~~~~~~~i~nI~f~nI~~t 397 (472)
........+|.|+|.++-
T Consensus 535 ---~~~~~~~~gi~i~N~tVg 552 (582)
T PF03718_consen 535 ---NNKQNDTMGIIIENWTVG 552 (582)
T ss_dssp ---T--B--EEEEEEEEEEET
T ss_pred ---ccccccccceEEEeEEEC
Confidence 112556788888888753
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.26 E-value=3.3e-05 Score=74.50 Aligned_cols=113 Identities=27% Similarity=0.279 Sum_probs=86.2
Q ss_pred EEEEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCc
Q 012057 210 LIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGC 289 (472)
Q Consensus 210 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s 289 (472)
.+.+..+.+++|++.++.+. .+++.+..+++++|+++.+... ..||.+..+.+.+|+++.|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 45777888888888888877 6778888888888888888873 378888888777888888887766887776 6
Q ss_pred eeEEEEeeeecC-CCcceecccCccCCCCcEEEEEEEeEEEecC-CceEEE
Q 012057 290 SDVDIADVTCGP-SHGISIGSLGAHYSQACVSNITVRNAIIRES-DNGLRI 338 (472)
Q Consensus 290 ~nI~I~n~~~~~-~~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~-~~gi~I 338 (472)
.+.+|+++++.. ..||.+... .+.+|+++++.+. ..||.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 677788888864 356777321 5777888888877 678873
No 32
>PLN02304 probable pectinesterase
Probab=98.19 E-value=0.0003 Score=71.69 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeee-cCCCCCceEEEeCc
Q 012057 88 DGSADDTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDG 141 (472)
Q Consensus 88 DG~tDdT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~G 141 (472)
||.. |-..||+||+++-+.. --+|+|.+| +|.-+ +.+ .. |++++|+++|
T Consensus 82 dGsG-df~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~--K~~Itl~G~g 133 (379)
T PLN02304 82 NGCC-NFTTVQSAVDAVGNFSQKRNVIWINSG-IYYEK-VTVPKT--KPNITFQGQG 133 (379)
T ss_pred CCCC-CccCHHHHHhhCcccCCCcEEEEEeCe-EeEEE-EEECCC--CCcEEEEecC
Confidence 4543 4778999999654422 347899999 89744 333 12 6788888875
No 33
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.18 E-value=1.8e-05 Score=74.59 Aligned_cols=113 Identities=25% Similarity=0.326 Sum_probs=78.5
Q ss_pred eeeEEEece----EEecCCCCeeeee-ccccEEEEeEEEeCC-----------CCCCCCCceeeecceeEEEEceEEecC
Q 012057 216 SSNLVVSGL----TIQNSPQFHMKFD-GCEGVMIDKLSISSP-----------KLSPNTDGIHIENTKSVGIYNSMISNG 279 (472)
Q Consensus 216 ~~nv~I~~v----~i~ns~~~~i~~~-~~~nv~I~~~~i~~~-----------~~~~n~DGI~i~~s~nV~I~n~~i~~g 279 (472)
.+|.+|.|. +|.+ +++.+. .++||.|+|++|... ......|+|.+.++++|+|++|.+..+
T Consensus 20 ~snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~ 96 (200)
T PF00544_consen 20 GSNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWG 96 (200)
T ss_dssp ESSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEET
T ss_pred CCCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEecc
Confidence 356666663 3333 355665 899999999999971 223467999999999999999999866
Q ss_pred ---------CceEEeCCCceeEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecC
Q 012057 280 ---------DDCISIGTGCSDVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRES 332 (472)
Q Consensus 280 ---------DD~I~i~s~s~nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~ 332 (472)
|..+.++.++.+|+|++|.|... .+..+|+......... .+|++.++.+.++
T Consensus 97 ~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 97 NFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp TS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred ccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 55688888899999999999874 4566776422222344 8999999999865
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.16 E-value=4.7e-05 Score=73.38 Aligned_cols=134 Identities=25% Similarity=0.237 Sum_probs=109.4
Q ss_pred EEEEEeeeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCc
Q 012057 210 LIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGC 289 (472)
Q Consensus 210 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s 289 (472)
.|.+..+++..|++.++.+.. .++.+..+.+++|++++|... ..||++..+.+++|+++.+.....+|.+.. +
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s 87 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG-S 87 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc-C
Confidence 478888899999999998653 567899999999999999984 579999999999999999999889999988 5
Q ss_pred eeEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEcc-CeeEE
Q 012057 290 SDVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENV-RNCIN 366 (472)
Q Consensus 290 ~nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v-~~~i~ 366 (472)
.+.+|+++++... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..+|.
T Consensus 88 ~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 88 SNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceE
Confidence 5559999999874 5777732 24678999999988889998642 4567777777766 66777
No 35
>PLN02634 probable pectinesterase
Probab=98.13 E-value=0.00059 Score=69.23 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeee-cCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~G 141 (472)
|-..||+||+++.+.. -.+++|-+| +|.-+ +.+ .. +++++|+++|
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~--k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAG-FYREK-VVVPAT--KPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCc-eEEEE-EEEcCC--CCeEEEEecC
Confidence 5779999999654432 347899999 88754 333 12 6678888775
No 36
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.00036 Score=67.95 Aligned_cols=178 Identities=20% Similarity=0.297 Sum_probs=119.0
Q ss_pred eEEEeCceEeCCCCCCCCCCCCCCceEEEEEeecCcEEEeee---eeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEE
Q 012057 135 LVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKG---TIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALI 211 (472)
Q Consensus 135 v~l~~~Gtl~~~~~~~~~~~~~~~~~~i~~~~~~nvtI~G~G---tIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i 211 (472)
+.|.+.|+|.++. +++ ..+....+.|.+|.|.| ++.|- -+
T Consensus 77 ~ii~v~Gti~~s~-ps~--------~k~~iki~sNkTivG~g~~a~~~g~----------------------------gl 119 (345)
T COG3866 77 VIIVVKGTITAST-PSD--------KKITIKIGSNKTIVGSGADATLVGG----------------------------GL 119 (345)
T ss_pred EEEEEcceEeccC-CCC--------ceEEEeeccccEEEeeccccEEEec----------------------------eE
Confidence 3466777776642 110 02566678999999965 33321 35
Q ss_pred EEEeeeeEEEeceEEecCCC-----Ceeee-eccccEEEEeEEEeCCCC---CCCCCc-eeee-cceeEEEEceEEecCC
Q 012057 212 RFFMSSNLVVSGLTIQNSPQ-----FHMKF-DGCEGVMIDKLSISSPKL---SPNTDG-IHIE-NTKSVGIYNSMISNGD 280 (472)
Q Consensus 212 ~~~~~~nv~I~~v~i~ns~~-----~~i~~-~~~~nv~I~~~~i~~~~~---~~n~DG-I~i~-~s~nV~I~n~~i~~gD 280 (472)
.++...||.|++|+|....+ ..|.+ ...+|+.|+++++..... ....|| +++. .+..|+|.+|.|...|
T Consensus 120 ~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~ 199 (345)
T COG3866 120 KIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHD 199 (345)
T ss_pred EEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCC
Confidence 66678899999999988763 34777 789999999999987332 123466 4564 6889999999999987
Q ss_pred ceEEeCCC--------ceeEEEEeeeecCC--Cc--ceecccCccCCCCcEEEEEEEeEEEecCC-ceEEEEeecCCCce
Q 012057 281 DCISIGTG--------CSDVDIADVTCGPS--HG--ISIGSLGAHYSQACVSNITVRNAIIRESD-NGLRIKTWQGGTGC 347 (472)
Q Consensus 281 D~I~i~s~--------s~nI~I~n~~~~~~--~g--i~iGs~~~~~~~~~i~nI~i~n~~i~~~~-~gi~I~~~~g~~g~ 347 (472)
-..-++.. -.+|++.+|.|.+. ++ +++| -+++-|+.+.... .|+.+.. |.
T Consensus 200 Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG------------~vHvyNNYy~~~~~~g~a~~i-----G~ 262 (345)
T COG3866 200 KSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG------------MVHVYNNYYEGNPKFGVAITI-----GT 262 (345)
T ss_pred eeeeeccCCcccccCCceeEEEeccccccccccCCceEee------------EEEEeccccccCcccceEEee-----cc
Confidence 77767662 25699999999873 33 6665 4567888887543 3444422 12
Q ss_pred eeeEEEEeEEEEccCeeEE
Q 012057 348 VSDLSFENIQMENVRNCIN 366 (472)
Q Consensus 348 v~nI~f~Ni~~~~v~~~i~ 366 (472)
-..|..|+..+++...++.
T Consensus 263 ~AkiyvE~NyF~~~~~~~~ 281 (345)
T COG3866 263 SAKIYVENNYFENGSEGLG 281 (345)
T ss_pred ceEEEEecceeccCCCCce
Confidence 2346666666666555543
No 37
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.09 E-value=0.0001 Score=75.84 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhhcCCcEEEecCCcEEE
Q 012057 93 DTAAFRAAWKAACAVEAGVVLAPSDYVFK 121 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~ 121 (472)
+.++||+|+++| ..|.+|+++.| +|.
T Consensus 3 s~~~lq~Ai~~a--~pGD~I~L~~G-ty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNA--KPGDTIVLADG-TYK 28 (425)
T ss_dssp SHHHHHHHHHH----TT-EEEE-SE-EEE
T ss_pred CHHHHHHHHHhC--CCCCEEEECCc-eee
Confidence 578999999965 34999999999 897
No 38
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.02 E-value=0.00022 Score=68.82 Aligned_cols=189 Identities=25% Similarity=0.308 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHhhcCCcEEEecCCcEEEEee-----eeecCCCCCceEEEeCceEeCCCCCCCCCCCCCCceEEEEEee
Q 012057 93 DTAAFRAAWKAACAVEAGVVLAPSDYVFKITS-----TIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKL 167 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~~-----~~l~gp~~s~v~l~~~Gtl~~~~~~~~~~~~~~~~~~i~~~~~ 167 (472)
--+-|++|++.| ..|.+|++-+| +|.-.. +.+ +++++|+++..-++ .
T Consensus 14 P~~Ti~~A~~~a--~~g~~i~l~~G-tY~~~~ge~fPi~i----~~gVtl~G~~~~kG---------------------~ 65 (246)
T PF07602_consen 14 PFKTITKALQAA--QPGDTIQLAPG-TYSEATGETFPIII----KPGVTLIGNESNKG---------------------Q 65 (246)
T ss_pred CHHHHHHHHHhC--CCCCEEEECCc-eeccccCCcccEEe----cCCeEEeecccCCC---------------------c
Confidence 346899999865 34889999999 897653 333 56666665531111 0
Q ss_pred cCcEEEeee---eeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCCeeeeeccccEEE
Q 012057 168 DDMTFTGKG---TIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMI 244 (472)
Q Consensus 168 ~nvtI~G~G---tIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I 244 (472)
.++.+.|.+ +|+|.+... .-..+.+...++.+|++++|.|...
T Consensus 66 ~~il~~g~~~~~~I~g~~~~~---------------------~~qn~tI~~~~~~~i~GvtItN~n~------------- 111 (246)
T PF07602_consen 66 IDILITGGGTGPTISGGGPDL---------------------SGQNVTIILANNATISGVTITNPNI------------- 111 (246)
T ss_pred ceEEecCCceEEeEeccCccc---------------------cceeEEEEecCCCEEEEEEEEcCCC-------------
Confidence 122233211 234433211 0013444445556666666665410
Q ss_pred EeEEEeCCCCCCCCCceeeecceeEEEEceEEec-CCceEEe-----CCCceeEEEEeeeecC-CCcceecccCccCCCC
Q 012057 245 DKLSISSPKLSPNTDGIHIENTKSVGIYNSMISN-GDDCISI-----GTGCSDVDIADVTCGP-SHGISIGSLGAHYSQA 317 (472)
Q Consensus 245 ~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~-gDD~I~i-----~s~s~nI~I~n~~~~~-~~gi~iGs~~~~~~~~ 317 (472)
...-||++.++ +.+|+||.|.. ..++|.+ +....++.|+++.+.. ..||++-.. ..
T Consensus 112 -----------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~ 174 (246)
T PF07602_consen 112 -----------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDN-----AA 174 (246)
T ss_pred -----------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcc-----cC
Confidence 01234555444 55555555554 3344432 2234566777777776 468887432 22
Q ss_pred cEEEEEEEeEEEecCCceEEEEeec---CC--CceeeeEEEEeEEEEcc
Q 012057 318 CVSNITVRNAIIRESDNGLRIKTWQ---GG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 318 ~i~nI~i~n~~i~~~~~gi~I~~~~---g~--~g~v~nI~f~Ni~~~~v 361 (472)
.+. -.|+|+.+++...||.+.... |. .+.+-+=+|++....++
T Consensus 175 ~~~-n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl 222 (246)
T PF07602_consen 175 PVE-NKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDL 222 (246)
T ss_pred Ccc-ceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceee
Confidence 233 366888888777798765322 11 22344445665555444
No 39
>smart00656 Amb_all Amb_all domain.
Probab=97.89 E-value=0.0011 Score=61.96 Aligned_cols=114 Identities=24% Similarity=0.250 Sum_probs=82.9
Q ss_pred EEEEEeeeeEEEeceEEecCCC------CeeeeeccccEEEEeEEEeCCC----CCCCCCce-eee-cceeEEEEceEEe
Q 012057 210 LIRFFMSSNLVVSGLTIQNSPQ------FHMKFDGCEGVMIDKLSISSPK----LSPNTDGI-HIE-NTKSVGIYNSMIS 277 (472)
Q Consensus 210 ~i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~I~~~~i~~~~----~~~n~DGI-~i~-~s~nV~I~n~~i~ 277 (472)
-|++..++||.|++|+|++... .+|.+.++++|.|++|+|.... .....||. ++. .+.+|+|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3667778899999999998643 4688899999999999999741 01114664 444 5899999999998
Q ss_pred cCCceEEeCCCce-------eEEEEeeeecCC--CcceecccCccCCCCcEEEEEEEeEEEecCC
Q 012057 278 NGDDCISIGTGCS-------DVDIADVTCGPS--HGISIGSLGAHYSQACVSNITVRNAIIRESD 333 (472)
Q Consensus 278 ~gDD~I~i~s~s~-------nI~I~n~~~~~~--~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~ 333 (472)
..+-+.-++.+.+ +|++.+|.+... +.=.+. . + .+++-|+.+.+..
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~-g--~~hv~NN~~~n~~ 167 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------F-G--YVHVYNNYYTGWT 167 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------C-C--EEEEEeeEEeCcc
Confidence 7666677776422 699999998763 222221 1 1 6889999998874
No 40
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.0035 Score=62.07 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=72.6
Q ss_pred EeecCcEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCCeeeeeccccEEE
Q 012057 165 YKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMI 244 (472)
Q Consensus 165 ~~~~nvtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I 244 (472)
..+.++.|+| =++.+.|.....+ ....+.-...+.-.|+.-.+.. ..++|.++++.++.|
T Consensus 74 v~aP~~~v~G-l~vr~sg~~lp~m------------------~agI~v~~~at~A~Vr~N~l~~-n~~Gi~l~~s~d~~i 133 (408)
T COG3420 74 VAAPDVIVEG-LTVRGSGRSLPAM------------------DAGIFVGRTATGAVVRHNDLIG-NSFGIYLHGSADVRI 133 (408)
T ss_pred EeCCCceeee-EEEecCCCCcccc------------------cceEEeccCcccceEEcccccc-cceEEEEeccCceEE
Confidence 3568888888 5666655542221 1112333344555555555554 346788888889999
Q ss_pred EeEEEeCCCC---CCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEee
Q 012057 245 DKLSISSPKL---SPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADV 297 (472)
Q Consensus 245 ~~~~i~~~~~---~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~ 297 (472)
++.+|..... .....||++.++.+..|....++-+.|||-... +++-.|+++
T Consensus 134 ~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gn 188 (408)
T COG3420 134 EGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGN 188 (408)
T ss_pred EeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceeccc
Confidence 9988886432 234678999999999999999988888887766 333334433
No 41
>PLN02773 pectinesterase
Probab=97.75 E-value=0.0051 Score=61.74 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 88 DGSADDTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 88 DG~tDdT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
||.. |-.-||+||+++-+.. --+|+|.+| +|.-. +.+... +.+++|.+++
T Consensus 12 dGsG-df~TIq~Aida~P~~~~~~~~I~Ik~G-~Y~E~-V~I~~~-k~~itl~G~~ 63 (317)
T PLN02773 12 DGSG-DYCTVQDAIDAVPLCNRCRTVIRVAPG-VYRQP-VYVPKT-KNLITLAGLS 63 (317)
T ss_pred CCCC-CccCHHHHHhhchhcCCceEEEEEeCc-eEEEE-EEECcC-CccEEEEeCC
Confidence 4443 4778999999764433 247899999 89743 443110 5578887764
No 42
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.62 E-value=0.0033 Score=59.36 Aligned_cols=123 Identities=25% Similarity=0.393 Sum_probs=76.4
Q ss_pred EEEeceEEecCCC------CeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeE
Q 012057 219 LVVSGLTIQNSPQ------FHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDV 292 (472)
Q Consensus 219 v~I~~v~i~ns~~------~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI 292 (472)
+.|+++++..... ..+.+..++++.|+++++... +.+|+.+..+....+.+.... .++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 3367766654321 347777788888888888763 347777775444444433322 123333344667
Q ss_pred EEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEec-CCceEEEEeecCCCceeeeEEEEeEEEEccCeeE
Q 012057 293 DIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRE-SDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCI 365 (472)
Q Consensus 293 ~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~-~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~i 365 (472)
.+.|+.+..+ .|+..++ ++++++||++.+ ...||.+... .+++++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccCc
Confidence 7788877664 4543322 688899999887 5678887642 23788888888877665
No 43
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.62 E-value=0.0066 Score=62.85 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=34.5
Q ss_pred cCCCCcchHHHHHHHHHHHhhcC---CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCc
Q 012057 86 VGDGSADDTAAFRAAWKAACAVE---AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDG 141 (472)
Q Consensus 86 ~gDG~tDdT~Aiq~Ai~~a~~~~---g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~G 141 (472)
.+||.. |-.-||+||++|.... -.+|+|-+| +|.-+ +.+. . |.+++|+++|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~Ek-V~Ip~~--kp~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQGT-VYVPAA--APPITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCc-eeEEE-EEeCCC--CceEEEEecC
Confidence 456654 4678999999654322 247899999 89754 3331 1 6788888865
No 44
>PLN02480 Probable pectinesterase
Probab=97.61 E-value=0.008 Score=60.99 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 92 DDTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 92 DdT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
.|-..||+||++|.+.. --+|+|.+| +|. ..+.+.-. |.+++|.++|
T Consensus 58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~G-vY~-E~V~I~~~-kp~ItL~G~g 106 (343)
T PLN02480 58 GDFTSVQSAIDAVPVGNSEWIIVHLRKG-VYR-EKVHIPEN-KPFIFMRGNG 106 (343)
T ss_pred CCcccHHHHHhhCccCCCceEEEEEcCc-EEE-EEEEECCC-CceEEEEecC
Confidence 46889999999654322 125789999 898 44444210 4456666654
No 45
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.54 E-value=8.2e-05 Score=54.78 Aligned_cols=39 Identities=38% Similarity=0.516 Sum_probs=23.4
Q ss_pred ccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEEEEeeee
Q 012057 85 AVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKITSTI 126 (472)
Q Consensus 85 A~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~~~~ 126 (472)
|+|||+||||+||.+|+++. ..|.+.=-.|.||.++++-
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCc
Confidence 79999999999999999842 2344555567789888764
No 46
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.49 E-value=0.0083 Score=64.75 Aligned_cols=46 Identities=24% Similarity=0.116 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhcC---CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE---AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~---g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-.-||+||+++-+.. --+|+|.+| +|.-. +.+.- -|.+++|.++|
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~E~-V~i~~-~k~~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYEET-VRVPL-EKKNVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCc-eEEee-eeecC-CCccEEEEecC
Confidence 4778999999765522 348999999 89744 33210 06677777775
No 47
>PLN02665 pectinesterase family protein
Probab=97.48 E-value=0.02 Score=58.63 Aligned_cols=201 Identities=15% Similarity=0.122 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCceEeCCCCCCCCCCCCCCceEEEEEeecC
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDD 169 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~Gtl~~~~~~~~~~~~~~~~~~i~~~~~~n 169 (472)
|-..||+||+++-+.. --+++|.+| +|.-+ +.+. . |++++|+++|. +.
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~--kp~Itl~G~~~-------------------------~~ 129 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPG-EYNEK-ITIDRS--KPFVTLYGSPG-------------------------AM 129 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCc-EEEEE-EEecCC--CCEEEEEecCC-------------------------CC
Confidence 4778999999654432 247889999 89844 3331 1 66777777641 11
Q ss_pred cEEEeeeeeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCC---------Ceee-eecc
Q 012057 170 MTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQ---------FHMK-FDGC 239 (472)
Q Consensus 170 vtI~G~GtIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~---------~~i~-~~~~ 239 (472)
..|+..++- ..+ |. .+ ..-....++++..++|+|+|... ..+- ....
T Consensus 130 tiIt~~~~a----~~~------------gT------~~-SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~g 186 (366)
T PLN02665 130 PTLTFDGTA----AKY------------GT------VY-SATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISG 186 (366)
T ss_pred CEEEECCcc----CCC------------CC------cc-eEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcC
Confidence 111111110 000 00 01 23345567888888888888632 1111 1235
Q ss_pred ccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecC-CCc----ceecccCccC
Q 012057 240 EGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGP-SHG----ISIGSLGAHY 314 (472)
Q Consensus 240 ~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~-~~g----i~iGs~~~~~ 314 (472)
+.+.+.+|+|.... |-+... ..+-.++||+|...=|-| ++ .-...++||++.. ..+ |.--+ +.
T Consensus 187 Dka~f~~C~f~G~Q-----DTL~~~-~gr~yf~~CyIeG~VDFI-FG--~g~a~fe~C~i~s~~~~~~g~ITA~~--r~- 254 (366)
T PLN02665 187 DKAAFYNCRFIGFQ-----DTLCDD-KGRHFFKDCYIEGTVDFI-FG--SGKSLYLNTELHVVGDGGLRVITAQA--RN- 254 (366)
T ss_pred CcEEEEcceecccc-----ceeEeC-CCCEEEEeeEEeecccee-cc--ccceeeEccEEEEecCCCcEEEEcCC--CC-
Confidence 66777777777632 344333 235667777777654433 22 2455777777654 221 11111 00
Q ss_pred CCCcEEEEEEEeEEEecCCceEEEE-eecCCCceeeeEEEEeEEEEcc
Q 012057 315 SQACVSNITVRNAIIRESDNGLRIK-TWQGGTGCVSDLSFENIQMENV 361 (472)
Q Consensus 315 ~~~~i~nI~i~n~~i~~~~~gi~I~-~~~g~~g~v~nI~f~Ni~~~~v 361 (472)
....-....|.||++.+....+.+. .|. .-..+.|.|..|.+.
T Consensus 255 ~~~~~~GfvF~~C~itg~~~~~yLGRpW~----~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 255 SEAEDSGFSFVHCKVTGTGTGAYLGRAWM----SRPRVVFAYTEMSSV 298 (366)
T ss_pred CCCCCceEEEEeeEEecCCCceeecCCCC----CcceEEEEccccCCe
Confidence 1111234567777777653233333 221 234567777777654
No 48
>PLN02176 putative pectinesterase
Probab=97.42 E-value=0.018 Score=58.29 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhcCC--cEEEecCCcEEEEeeeee-cCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVEA--GVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~g--~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~G 141 (472)
|-..||+||+++-+... -+|+|.+| +|.-+ +.+ .. |.+++|+++|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~~--k~~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYREK-VTIPKE--KGYIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCc-EEEEE-EEECCC--CccEEEEEcC
Confidence 47799999996544332 37899999 89754 333 12 6678888775
No 49
>PLN02682 pectinesterase family protein
Probab=97.42 E-value=0.023 Score=58.06 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~G 141 (472)
|-.-||+||+++-+.. -.+|+|.+| +|.-+ +.+. . |++++|+++|
T Consensus 81 df~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~Ek-V~Ip~~--k~~Itl~G~g 128 (369)
T PLN02682 81 DFTTIQAAIDSLPVINLVRVVIKVNAG-TYREK-VNIPPL--KAYITLEGAG 128 (369)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeeEE-EEEecc--CceEEEEecC
Confidence 5778999999654332 247899999 89744 3331 2 6788888875
No 50
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.40 E-value=0.021 Score=60.95 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHHHhhcC---CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 88 DGSADDTAAFRAAWKAACAVE---AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 88 DG~tDdT~Aiq~Ai~~a~~~~---g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
||.- |-.-||+||+++.... --+++|.+| +|.-. +.+.. -|.+++|.++|
T Consensus 232 dGsG-~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~nItl~G~g 284 (529)
T PLN02170 232 DGSG-THKTIGEALLSTSLESGGGRTVIYLKAG-TYHEN-LNIPT-KQKNVMLVGDG 284 (529)
T ss_pred CCCC-chhhHHHHHHhcccccCCceEEEEEeCC-eeEEE-EecCC-CCceEEEEEcC
Confidence 4433 4778999999654322 358999999 89744 33310 16788888775
No 51
>PLN02432 putative pectinesterase
Probab=97.31 E-value=0.028 Score=55.83 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeee-cCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~G 141 (472)
|-..||+||+++.+.. -.+|+|.+| +|.-+ +.+ .. +++++|.++|
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~ip~~--k~~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYREK-VVVPAD--KPFITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeEEE-EEEecc--CceEEEEEcC
Confidence 4789999999655433 247899999 89644 333 11 5677777664
No 52
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.27 E-value=0.019 Score=61.78 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-.-||+||+++-+.. .-+|+|.+| +|.-.=..-.. +.+++|.++|
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~V~I~~~--k~~i~l~G~g 290 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKG-VYKENIDMKKK--KTNIMLVGDG 290 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeeEEEeccCC--CceEEEEEcC
Confidence 4778999999654432 348999999 89654222111 5677777765
No 53
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.23 E-value=0.03 Score=60.29 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-..||+||+++-+.. --+|+|.+| +|.-. +.+.-. +.+++|.++|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~-V~i~~~-k~~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKG-TYKEN-VEIGKK-KKNLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCc-eeeEE-EEecCC-CceEEEEecC
Confidence 5789999999665433 248999999 89754 333110 5677777775
No 54
>PLN02916 pectinesterase family protein
Probab=97.23 E-value=0.033 Score=59.16 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhc--C---CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAV--E---AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~--~---g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-.-||+||+++.+. + --+|+|.+| +|.-. +.+... +.+++|.++|
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~~i~l~G~g 248 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAG-VYNEK-VEIDRH-MKNVMFVGDG 248 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCc-eeeEE-EEecCC-CceEEEEecC
Confidence 567899999966431 1 248999999 89743 333110 5677787775
No 55
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.22 E-value=0.042 Score=58.83 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeee-cCCCCCceEEEeCc
Q 012057 88 DGSADDTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDG 141 (472)
Q Consensus 88 DG~tDdT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~G 141 (472)
||.. |-..||+||+++.+.. .-+|+|.+| +|.-. +.+ .. +.+++|.++|
T Consensus 213 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~~i~l~G~g 264 (520)
T PLN02201 213 DGTG-NFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLEN-VEIKKK--KWNIMMVGDG 264 (520)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCc-eeEEE-EEecCC--CceEEEEecC
Confidence 4443 5789999999654432 358999999 89744 333 12 5677777775
No 56
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.22 E-value=0.028 Score=61.09 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-..||+||+++-+.. --+|+|.+| +|.-..+.+.- .|.+++|.++|
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~-~k~ni~l~G~g 331 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGR-KKTNLMFIGDG 331 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECC-CCceEEEEecC
Confidence 4678999999654432 348899999 89875444321 16788888876
No 57
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.16 E-value=0.031 Score=60.58 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=45.6
Q ss_pred EEeeeeEEEeceEEecCCCC----eee-eeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCC
Q 012057 213 FFMSSNLVVSGLTIQNSPQF----HMK-FDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGT 287 (472)
Q Consensus 213 ~~~~~nv~I~~v~i~ns~~~----~i~-~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s 287 (472)
....+++..++|+|.|.... .+- -...+...+.+|.|.... |-+.... .+-..+||+|...=|-| +
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F-- 406 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ-----DTLYTHS-LRQFYRECDIYGTVDFI-F-- 406 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC-----cceEECC-CCEEEEeeEEeccccee-c--
Confidence 34567888899999886321 122 223566677777776632 4444433 34567777776543432 2
Q ss_pred CceeEEEEeeeecC
Q 012057 288 GCSDVDIADVTCGP 301 (472)
Q Consensus 288 ~s~nI~I~n~~~~~ 301 (472)
|.-.+.++||++..
T Consensus 407 G~a~avfq~C~i~~ 420 (566)
T PLN02713 407 GNAAVVFQNCNLYP 420 (566)
T ss_pred ccceEEEeccEEEE
Confidence 23466677776643
No 58
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.15 E-value=0.064 Score=56.85 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~G 141 (472)
|-.-||+||++|-+.. --+++|.+| +|.-. +.+. . |.+++|.++|
T Consensus 208 ~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~nItliGdg 255 (509)
T PLN02488 208 KYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDEI-VRIGST--KPNLTLIGDG 255 (509)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeEEE-EEecCC--CccEEEEecC
Confidence 5778999999664432 348999999 89754 3331 2 6688888776
No 59
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.13 E-value=0.02 Score=57.34 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-..||+||+++.+.. .-+|+|.+| +|.-+ +.+... +.+++|.++|
T Consensus 11 df~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~i~~~-k~~v~l~G~~ 58 (298)
T PF01095_consen 11 DFTTIQAAIDAAPDNNTSRYTIFIKPG-TYREK-VTIPRS-KPNVTLIGEG 58 (298)
T ss_dssp SBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-ST-STTEEEEES-
T ss_pred CccCHHHHHHhchhcCCceEEEEEeCe-eEccc-cEeccc-cceEEEEecC
Confidence 5678999999755433 248999999 89744 444211 4677777764
No 60
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.11 E-value=0.042 Score=59.83 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-..||+||+++-+.. --+++|.+| +|.-. +.+... +.+++|.++|
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~~i~l~G~g 343 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQG-IYDET-VTVDKK-MVNVTMYGDG 343 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCC-eeEEE-EEEcCC-CceEEEEecC
Confidence 5789999999654432 348899999 89754 333111 5678888776
No 61
>PLN02671 pectinesterase
Probab=97.10 E-value=0.066 Score=54.58 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCc
Q 012057 88 DGSADDTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDG 141 (472)
Q Consensus 88 DG~tDdT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~G 141 (472)
||.. |-..||+||+++-+.. --+|+|-+| +|.-+ +.+. . +.+++|.++|
T Consensus 66 dGsG-df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~I~~~--k~~Itl~G~g 117 (359)
T PLN02671 66 NGGG-DSLTVQGAVDMVPDYNSQRVKIYILPG-IYREK-VLVPKS--KPYISFIGNE 117 (359)
T ss_pred CCCC-CccCHHHHHHhchhcCCccEEEEEeCc-eEEEE-EEECCC--CCeEEEEecC
Confidence 4433 4779999999654432 348999999 89754 3331 1 6677777764
No 62
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.09 E-value=0.063 Score=57.52 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-..||+||+++-+.. --+|+|.+| +|.- .+.+.- -+.+++|+++|
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~~itl~G~g 276 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGG-EYFE-NVELPK-KKTMIMFIGDG 276 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCc-eEEE-EEEecC-CCceEEEEEcC
Confidence 4778999999654432 348999999 8974 344311 16678887775
No 63
>PLN02314 pectinesterase
Probab=97.09 E-value=0.037 Score=60.29 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~G 141 (472)
|-.-||+|++++-+.. --+|+|.+| +|.-. +.+. . +.+++|.++|
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E~-V~i~~~--k~~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVEN-VLLDKS--KWNVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEEEE-EEecCC--CceEEEEecC
Confidence 4667999999654432 248999999 89743 3331 2 6678888776
No 64
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.09 E-value=0.037 Score=59.68 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~G 141 (472)
|-.-||+||+++-+.. .-+|+|.+| +|.-. +.+. . +.+++|.++|
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~--k~~i~l~G~g 288 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREG-VYEEN-VEIPIY--KTNIVLIGDG 288 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCc-eeEEE-EecCCC--CccEEEEecC
Confidence 5778999999654433 247899999 89743 3331 1 6688888776
No 65
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.08 E-value=0.043 Score=59.54 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeec-CCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFS-GPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~-gp~~s~v~l~~~G 141 (472)
|-.-||+||+++-+.. --+|+|.+| +|.-. +.+. . +.+++|.++|
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~--k~~i~l~G~g 317 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQG-VYNEK-VDVTKK--MTHVTFIGDG 317 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCc-eeEEE-EEecCC--CCcEEEEecC
Confidence 4678999999654432 248999999 89754 3331 2 6788888876
No 66
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.07 E-value=0.047 Score=58.83 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=79.7
Q ss_pred CCCcchHHHHHHHHHHHhhcC-----CcEEEecCCcEEEEeeeee-cCCCCCceEEEeCceEeCCCCCCCCCCCCCCceE
Q 012057 88 DGSADDTAAFRAAWKAACAVE-----AGVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQW 161 (472)
Q Consensus 88 DG~tDdT~Aiq~Ai~~a~~~~-----g~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~Gtl~~~~~~~~~~~~~~~~~~ 161 (472)
||.- |-.-||+||+++-+.. --+|+|.+| +|.-. +.+ .. |.+++|.++|.
T Consensus 230 dGsG-~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G-~Y~E~-V~i~~~--k~~i~l~G~g~------------------- 285 (538)
T PLN03043 230 YGTD-NFTTITDAIAAAPNNSKPEDGYFVIYAREG-YYEEY-VVVPKN--KKNIMLIGDGI------------------- 285 (538)
T ss_pred CCCC-CCcCHHHHHHhccccCCCCcceEEEEEcCe-eeEEE-EEeCCC--CCcEEEEecCC-------------------
Confidence 4433 4778999999654332 138999999 89744 333 12 67888887761
Q ss_pred EEEEeecCcEEEeee-eeecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCCC----eeee
Q 012057 162 LVFYKLDDMTFTGKG-TIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQF----HMKF 236 (472)
Q Consensus 162 i~~~~~~nvtI~G~G-tIdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~~----~i~~ 236 (472)
....|+|.- ..|| | .. .+ .+-.....+++..++|+|+|.... .+-+
T Consensus 286 ------~~tiIt~~~~~~dg----~-~T-----------------~~-saT~~v~~~~F~a~~it~~Ntag~~~~QAvAl 336 (538)
T PLN03043 286 ------NKTIITGNHSVVDG----W-TT-----------------FN-SSTFAVSGERFVAVDVTFRNTAGPEKHQAVAL 336 (538)
T ss_pred ------CCeEEEeCCccCCC----C-cc-----------------cc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEE
Confidence 111222210 0111 1 00 01 133444567888888888886432 2222
Q ss_pred -eccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecC
Q 012057 237 -DGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGP 301 (472)
Q Consensus 237 -~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~ 301 (472)
...+...+.+|.|.... |-+... +.+-..+||+|...=|-| ++ .-...++||++..
T Consensus 337 rv~~D~~~f~~C~~~gyQ-----DTLy~~-~~rq~y~~c~I~GtVDFI-FG--~a~avfq~c~i~~ 393 (538)
T PLN03043 337 RNNADLSTFYRCSFEGYQ-----DTLYVH-SLRQFYRECDIYGTVDFI-FG--NAAAIFQNCNLYA 393 (538)
T ss_pred EEcCCcEEEEeeEEeccC-----cccccC-CCcEEEEeeEEeeccceE-ee--cceeeeeccEEEE
Confidence 23455666666666532 333333 234566666666543432 22 2455666666543
No 67
>PLN02497 probable pectinesterase
Probab=97.07 E-value=0.078 Score=53.58 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhhcCC--cEEEecCCcEEEEeeeee-cCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVEA--GVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~g--~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~G 141 (472)
|-..||+||+++-.... .+++|-+| +|.-+ +.+ .. |++++|+++|
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G-~Y~Ek-V~Ip~~--k~~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAG-LYREK-VKIPYD--KPFIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-EEEEE-EEecCC--CCcEEEEecC
Confidence 47799999996544332 36899999 89654 333 11 6678777765
No 68
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.02 E-value=0.048 Score=59.39 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-..||+|++++-+.. --+|+|.+| +|.-. +.+... +.+++|.++|
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E~-V~i~~~-k~ni~l~Gdg 333 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAG-VYREN-VEVTKK-KKNIMFLGDG 333 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCc-eeEEE-EEeCCC-CCeEEEEecC
Confidence 5779999999654432 248999999 89754 332111 5677777775
No 69
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.02 E-value=0.041 Score=60.45 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCceEeCCCCCCCCCCCCCCceEEEEEeecCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDM 170 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~Gtl~~~~~~~~~~~~~~~~~~i~~~~~~nv 170 (472)
|-.-||+||+++-+.. --+|+|-+| +|.-+ +.+.-+ +.+++|.++|. +..
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~~i~l~Gdg~-------------------------~~T 312 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAG-IYKEY-VQVNRS-MTHLVFIGDGP-------------------------DKT 312 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCC-ceEEE-EEEcCC-CCcEEEEecCC-------------------------CCe
Confidence 5779999999654432 348999999 89754 333111 56777777751 111
Q ss_pred EEEeeee-eecCCCcccCCCCCCCCCCCCCCCCCCCCCCeEEEEEeeeeEEEeceEEecCCC----Ceeee-eccccEEE
Q 012057 171 TFTGKGT-IEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQ----FHMKF-DGCEGVMI 244 (472)
Q Consensus 171 tI~G~Gt-IdG~g~~~w~~~~~~~~g~~g~~~~g~~~rp~~i~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I 244 (472)
.|+|.-. -||.+ .| + ..-.....+++..+||+|+|... ..+-+ ...+...+
T Consensus 313 iIt~~~~~~dg~~-T~---------------------~-SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~f 369 (670)
T PLN02217 313 VISGSKSYKDGIT-TY---------------------K-TATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIF 369 (670)
T ss_pred EEEcCCccCCCCC-cc---------------------c-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEE
Confidence 1111000 01100 00 1 12334457789999999998743 22332 34788999
Q ss_pred EeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCC-----CcceecccCccCCCCcE
Q 012057 245 DKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPS-----HGISIGSLGAHYSQACV 319 (472)
Q Consensus 245 ~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~-----~gi~iGs~~~~~~~~~i 319 (472)
.+|+|.... |-+.... .+-.+++|+|...=|-| ++ .....++||++..- ..-.|-..++. +...-
T Consensus 370 y~C~f~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~ 439 (670)
T PLN02217 370 YNCKFDGYQ-----DTLYAHS-HRQFYRDCTISGTIDFL-FG--DAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRES 439 (670)
T ss_pred Ecceeeecc-----chhccCC-CcEEEEeCEEEEeccEE-ec--CceEEEEccEEEEccCCCCCceeEecCCCC-CCCCC
Confidence 999998743 4455443 46789999998755543 33 35788999998642 11222112211 11223
Q ss_pred EEEEEEeEEEecCCceEE----EEeecCCC-ceeeeEEEEeEEEEccCee
Q 012057 320 SNITVRNAIIRESDNGLR----IKTWQGGT-GCVSDLSFENIQMENVRNC 364 (472)
Q Consensus 320 ~nI~i~n~~i~~~~~gi~----I~~~~g~~-g~v~nI~f~Ni~~~~v~~~ 364 (472)
..+.|.||++.....-+. .+.+-|+. ..-..+.|.+..|.+.-.|
T Consensus 440 tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P 489 (670)
T PLN02217 440 TGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPP 489 (670)
T ss_pred ceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEcC
Confidence 578899999988642111 11111211 2356788999988876443
No 70
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.95 E-value=0.06 Score=58.02 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhhc----CCcEEEecCCcEEEEeeeee-cCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAV----EAGVVLAPSDYVFKITSTIF-SGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~----~g~~V~iP~G~ty~i~~~~l-~gp~~s~v~l~~~G 141 (472)
|-.-||+||+++-+. .--+|+|.+| +|.-. +.+ .. |.+++|.++|
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~~~--k~~i~l~G~g 283 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVRLN--NDDIMLVGDG 283 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEecCC--CCcEEEEEcC
Confidence 577899999965421 2357899999 89765 222 11 6788888876
No 71
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.92 E-value=0.077 Score=57.59 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-.-||+|++++-+.. .-+|+|.+| +|.-. +.+.-. +.+++|.++|
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E~-V~i~~~-k~~i~~~G~g 316 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKG-VYFEN-VRVEKK-KWNVVMVGDG 316 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-ceEEE-EEecCC-CCeEEEEecC
Confidence 4678999999664432 348999999 89743 333111 5677777775
No 72
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.92 E-value=0.013 Score=55.20 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=72.5
Q ss_pred EeeeeEEEeceEEecC---------------CCCeeeeeccccEEEEeEEEeCCCCC---CCCCc-eeee-cceeEEEEc
Q 012057 214 FMSSNLVVSGLTIQNS---------------PQFHMKFDGCEGVMIDKLSISSPKLS---PNTDG-IHIE-NTKSVGIYN 273 (472)
Q Consensus 214 ~~~~nv~I~~v~i~ns---------------~~~~i~~~~~~nv~I~~~~i~~~~~~---~n~DG-I~i~-~s~nV~I~n 273 (472)
.+++||.|++|+|.+. ..-.+.++.+++|.|++|++...... ...|| +++. .+.+|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 4899999999999982 33458899999999999999975211 01465 6775 689999999
Q ss_pred eEEecCCceEEeCCC-------ceeEEEEeeeecCC--CcceecccCccCCCCcEEEEEEEeEEEec-CCceEEE
Q 012057 274 SMISNGDDCISIGTG-------CSDVDIADVTCGPS--HGISIGSLGAHYSQACVSNITVRNAIIRE-SDNGLRI 338 (472)
Q Consensus 274 ~~i~~gDD~I~i~s~-------s~nI~I~n~~~~~~--~gi~iGs~~~~~~~~~i~nI~i~n~~i~~-~~~gi~I 338 (472)
|.|.+.+.+.-+++. ..+|++.+|.+... +.=.+ +. -.+++-|+.+.+ ..+++..
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~-------r~---G~~Hv~NN~~~~~~~y~i~~ 187 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV-------RF---GYVHVYNNYYYNWSGYAIGA 187 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE-------CS---CEEEEES-EEEEECSESEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc-------cc---cEEEEEEeeeECCCCEEEEc
Confidence 999875444334431 36899999988653 21122 01 257788886654 3345544
No 73
>PLN02197 pectinesterase
Probab=96.74 E-value=0.061 Score=58.41 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEecCCcEEEEeeeeecCCCCCceEEEeCc
Q 012057 93 DTAAFRAAWKAACAVE--AGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDG 141 (472)
Q Consensus 93 dT~Aiq~Ai~~a~~~~--g~~V~iP~G~ty~i~~~~l~gp~~s~v~l~~~G 141 (472)
|-..||+||+++-+.. --+|+|.+| +|.=. +.+.. .|.+++|.++|
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~ni~l~G~g 333 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAG-IYNEQ-VTIPK-KKNNIFMFGDG 333 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCc-eEEEE-EEccC-CCceEEEEEcC
Confidence 4778999999654432 237899999 88744 33310 05678888775
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.54 E-value=0.14 Score=52.39 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=33.4
Q ss_pred EeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCcEEEEe-eeeecCCCCCceEEEeCce
Q 012057 79 DVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDYVFKIT-STIFSGPCKPGLVFQLDGV 142 (472)
Q Consensus 79 ~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ty~i~-~~~l~gp~~s~v~l~~~Gt 142 (472)
.|+.|=+.+| || +..||+. -+.|.+-+|.+|.++ ++.+ ++.+.|.+.|.
T Consensus 45 qvkt~~~~P~---eD---le~~I~~-----haKVaL~Pg~~Y~i~~~V~I----~~~cYIiGnGA 94 (386)
T PF01696_consen 45 QVKTYWMEPG---ED---LEEAIRQ-----HAKVALRPGAVYVIRKPVNI----RSCCYIIGNGA 94 (386)
T ss_pred eEEEEEcCCC---cC---HHHHHHh-----cCEEEeCCCCEEEEeeeEEe----cceEEEECCCE
Confidence 4667777776 23 4556653 345888888899985 6667 56788888873
No 75
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=95.96 E-value=0.79 Score=44.84 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=15.9
Q ss_pred HhhcCCcEEEecCCcEEEEeee
Q 012057 104 ACAVEAGVVLAPSDYVFKITST 125 (472)
Q Consensus 104 a~~~~g~~V~iP~G~ty~i~~~ 125 (472)
.|.+-..-+++|+|+|.++.+.
T Consensus 66 ~cenint~ifip~gktl~v~g~ 87 (464)
T PRK10123 66 VCDNINTGIFIPPGKTLHILGS 87 (464)
T ss_pred EecccccceEeCCCCeEEEEEE
Confidence 3554455699999998888654
No 76
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.07 E-value=1.3 Score=42.05 Aligned_cols=128 Identities=14% Similarity=0.227 Sum_probs=75.1
Q ss_pred ccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEec-CCceEEeCCCceeEEEEeeeecCCCc--ceecccCccCCC
Q 012057 240 EGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISN-GDDCISIGTGCSDVDIADVTCGPSHG--ISIGSLGAHYSQ 316 (472)
Q Consensus 240 ~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~-gDD~I~i~s~s~nI~I~n~~~~~~~g--i~iGs~~~~~~~ 316 (472)
+..+++|+.|-.+ ..||||..+ +-+|+|.++.. +.|+++++..+..++|.+.-...... |..-.
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------- 127 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------- 127 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S-------
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecC-------
Confidence 3567777777543 348999988 68899999887 88999998855566776655544322 44421
Q ss_pred CcEEEEEEEeEEEecCCceEEEEeec---CCCceeeeEEEEeEEEEccCeeEEEEeeccCCccccCCCCceEEEeEEEEe
Q 012057 317 ACVSNITVRNAIIRESDNGLRIKTWQ---GGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRN 393 (472)
Q Consensus 317 ~~i~nI~i~n~~i~~~~~gi~I~~~~---g~~g~v~nI~f~Ni~~~~v~~~i~I~~~~~~~~~~~~~~~~~~i~nI~f~n 393 (472)
. -.++|+|-+..+. |-.+.+-. ...+.=++|.+++........-+.|...|. ....|++++++.
T Consensus 128 -~-Gtv~I~nF~a~d~--GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g---------D~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -G-GTVTIKNFYAEDF--GKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG---------DTATISNSCIKG 194 (215)
T ss_dssp -S-EEEEEEEEEEEEE--EEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT---------TTEEEEEEEEEE
T ss_pred -c-eeEEEEeEEEcCC--CEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC---------CeEEEEEEEecC
Confidence 1 3677887666543 54444421 111244667777766554333445655554 345777777665
No 77
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=94.94 E-value=0.53 Score=46.77 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHhhcCC---cEEEecCCcEEEE
Q 012057 92 DDTAAFRAAWKAACAVEA---GVVLAPSDYVFKI 122 (472)
Q Consensus 92 DdT~Aiq~Ai~~a~~~~g---~~V~iP~G~ty~i 122 (472)
++-..||+|+++|-...+ ..+.+-+| .|.-
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~G-vY~e 124 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAG-VYQE 124 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccc-eece
Confidence 477789999997755433 35567788 7753
No 78
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=94.41 E-value=1.7 Score=42.19 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=62.8
Q ss_pred eEEeCCCceeEEEEeeeecCC--CcceecccCccCCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEE
Q 012057 282 CISIGTGCSDVDIADVTCGPS--HGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQME 359 (472)
Q Consensus 282 ~I~i~s~s~nI~I~n~~~~~~--~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~ 359 (472)
+|.+.+ .+.+|+||+|... .||.+-... ....+.+++|+++.+.....||.+...... +.| .++|..++
T Consensus 116 Gi~Ies--s~~tI~Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~---~~n-~I~NN~I~ 186 (246)
T PF07602_consen 116 GIWIES--SSPTIANNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYFNKTGISISDNAAP---VEN-KIENNIIE 186 (246)
T ss_pred EEEEec--CCcEEEeeEEECCccccEEEEeee---cCCcccceEeecceEEecCcCeEEEcccCC---ccc-eeeccEEE
Confidence 677766 3999999999883 577762211 135778899999999988889988643322 333 33666666
Q ss_pred ccCeeEEEEeec-cCCccccCCCCceEEEeEEEEeEEE
Q 012057 360 NVRNCINIDQYY-CLSKECLNQTSAVFVTGITYRNIKG 396 (472)
Q Consensus 360 ~v~~~i~I~~~~-~~~~~~~~~~~~~~i~nI~f~nI~~ 396 (472)
+-..+|.+...- ............-.|++=..-+|..
T Consensus 187 ~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~ 224 (246)
T PF07602_consen 187 NNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNN 224 (246)
T ss_pred eCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEe
Confidence 544466654322 1111011112234566555555665
No 79
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.01 E-value=3.1 Score=41.77 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=73.7
Q ss_pred eeeeEEEeceEEecCCC----Ce--ee-eeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecC--------
Q 012057 215 MSSNLVVSGLTIQNSPQ----FH--MK-FDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNG-------- 279 (472)
Q Consensus 215 ~~~nv~I~~v~i~ns~~----~~--i~-~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~g-------- 279 (472)
...++.|+|++++++.. .+ |. ........|+++++.. |.-||.+.++.++.|+.+++..-
T Consensus 75 ~aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~-----n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~r 149 (408)
T COG3420 75 AAPDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIG-----NSFGIYLHGSADVRIEGNTIQGLADLRVAER 149 (408)
T ss_pred eCCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccc-----cceEEEEeccCceEEEeeEEeeccccchhhc
Confidence 46689999999997642 22 22 2345666777777765 56799999999999999999862
Q ss_pred CceEEeCCCceeEEEEeeeecCC-CcceecccCccCCCCcEEEEEEEeEEEecCCceEE
Q 012057 280 DDCISIGTGCSDVDIADVTCGPS-HGISIGSLGAHYSQACVSNITVRNAIIRESDNGLR 337 (472)
Q Consensus 280 DD~I~i~s~s~nI~I~n~~~~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~ 337 (472)
.++|.+.. +.+..|..+.+.-+ +||.... .++-.|+++.++..+.|..
T Consensus 150 GnGI~vyN-a~~a~V~~ndisy~rDgIy~~~---------S~~~~~~gnr~~~~RygvH 198 (408)
T COG3420 150 GNGIYVYN-APGALVVGNDISYGRDGIYSDT---------SQHNVFKGNRFRDLRYGVH 198 (408)
T ss_pred cCceEEEc-CCCcEEEcCccccccceEEEcc---------cccceecccchhheeeeEE
Confidence 34676666 66777777776654 4666633 2455566666666655553
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.44 E-value=0.19 Score=34.90 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=18.8
Q ss_pred eeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEe
Q 012057 235 KFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMIS 277 (472)
Q Consensus 235 ~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~ 277 (472)
.+..+.+.+|++.+|.. +.|||++..+.+-+|+++.+.
T Consensus 3 ~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 3 YLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 34444455555555544 234555555555555555444
No 81
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=92.18 E-value=7.5 Score=36.87 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=86.1
Q ss_pred eeeEEEeceEEecCCCCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecce-eEEEEceEEecCCceEEeCCCceeEEE
Q 012057 216 SSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTK-SVGIYNSMISNGDDCISIGTGCSDVDI 294 (472)
Q Consensus 216 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~-nV~I~n~~i~~gDD~I~i~s~s~nI~I 294 (472)
-+..+|+++.|-....-+||..+ +-+|+|+.++.- ..|++.+.+.. .++|.+.-.++.+|-|-=..+...+.|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I 133 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTI 133 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEE
Confidence 46789999988766667899888 789999998874 45899999877 999999999998887755556678899
Q ss_pred EeeeecCCCcceecccCccCCC-CcEEEEEEEeEEEecCCceEEEEeecCCCceeeeEEEEe
Q 012057 295 ADVTCGPSHGISIGSLGAHYSQ-ACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFEN 355 (472)
Q Consensus 295 ~n~~~~~~~gi~iGs~~~~~~~-~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~N 355 (472)
+|-+... .|-.+-|.|.-... +.-++|.+++........-+.|....+....|+++.+..
T Consensus 134 ~nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 134 KNFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp EEEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred EeEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 9965432 23333233322222 244678888776554422345555566655666665554
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.56 E-value=0.34 Score=33.56 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.6
Q ss_pred ceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecC
Q 012057 260 GIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGP 301 (472)
Q Consensus 260 GI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~ 301 (472)
||.+..+.+.+|+++.+....|||.+.. +.+-+|+++++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEEc
Confidence 6888888888999999998888998887 5677777777654
No 83
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=90.62 E-value=6.7 Score=40.44 Aligned_cols=77 Identities=9% Similarity=0.052 Sum_probs=32.6
Q ss_pred eEEEeceEEecCC-CCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCCCceeEEEEe
Q 012057 218 NLVVSGLTIQNSP-QFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIAD 296 (472)
Q Consensus 218 nv~I~~v~i~ns~-~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n 296 (472)
++++.++.+.... ..++-+....+++|.+|.|.+- -|..++......|++|.|....-||.-. +...+.|++
T Consensus 122 ~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf------~g~cl~~~~~~~VrGC~F~~C~~gi~~~-~~~~lsVk~ 194 (386)
T PF01696_consen 122 GVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF------HGTCLESWAGGEVRGCTFYGCWKGIVSR-GKSKLSVKK 194 (386)
T ss_pred eeEEEEEEEecCCccceeEEEecceEEEEeeEEecC------cceeEEEcCCcEEeeeEEEEEEEEeecC-CcceEEeeh
Confidence 4445555554443 2234444444555555555442 1222332234455555554433333221 134444555
Q ss_pred eeecC
Q 012057 297 VTCGP 301 (472)
Q Consensus 297 ~~~~~ 301 (472)
|+|+.
T Consensus 195 C~Fek 199 (386)
T PF01696_consen 195 CVFEK 199 (386)
T ss_pred eeeeh
Confidence 55444
No 84
>PLN02665 pectinesterase family protein
Probab=89.54 E-value=11 Score=38.91 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=76.6
Q ss_pred eeccccEEEEeEEEeCCCCC-----CCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecc
Q 012057 236 FDGCEGVMIDKLSISSPKLS-----PNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGS 309 (472)
Q Consensus 236 ~~~~~nv~I~~~~i~~~~~~-----~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs 309 (472)
...++++..+|++|.|.... .+...+.+. ...+..++||.|...-|-+-... ..-.++||++.+.-.+-+|.
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~ 227 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS 227 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc
Confidence 44578999999999986421 112333332 46899999999999888776544 45789999999988877765
Q ss_pred cCccCCCCcEEEEEEEeEEEecCCce--EEEEeecCC--CceeeeEEEEeEEEEccC
Q 012057 310 LGAHYSQACVSNITVRNAIIRESDNG--LRIKTWQGG--TGCVSDLSFENIQMENVR 362 (472)
Q Consensus 310 ~~~~~~~~~i~nI~i~n~~i~~~~~g--i~I~~~~g~--~g~v~nI~f~Ni~~~~v~ 362 (472)
-...+++|++.-...+ -.|.. +++ ...-....|.|+++....
T Consensus 228 ----------g~a~fe~C~i~s~~~~~~g~ITA-~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 228 ----------GKSLYLNTELHVVGDGGLRVITA-QARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred ----------cceeeEccEEEEecCCCcEEEEc-CCCCCCCCCceEEEEeeEEecCC
Confidence 2456888888754333 22322 221 112346789999998754
No 85
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=88.81 E-value=6.1 Score=42.43 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=41.2
Q ss_pred EEeeeeEEEeceEEecCCCC----eeee-eccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCC
Q 012057 213 FFMSSNLVVSGLTIQNSPQF----HMKF-DGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGT 287 (472)
Q Consensus 213 ~~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s 287 (472)
....+++..+||+|+|.... .+-+ ...+.+.+.+|.|.... |-+.... .+-.++||+|...=|-| ++
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI-FG- 337 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI-FG- 337 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE-ec-
Confidence 34567888888888887432 1111 23555666666666522 3343332 23455666666443332 22
Q ss_pred CceeEEEEeeeec
Q 012057 288 GCSDVDIADVTCG 300 (472)
Q Consensus 288 ~s~nI~I~n~~~~ 300 (472)
.....++||++.
T Consensus 338 -~a~avf~~C~i~ 349 (497)
T PLN02698 338 -NAAAVFQNCYLF 349 (497)
T ss_pred -ccceeecccEEE
Confidence 234556666654
No 86
>PLN02773 pectinesterase
Probab=88.62 E-value=14 Score=37.33 Aligned_cols=82 Identities=11% Similarity=0.072 Sum_probs=41.9
Q ss_pred EEEEeeeeEEEeceEEecCCCC----eee-eeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEe
Q 012057 211 IRFFMSSNLVVSGLTIQNSPQF----HMK-FDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISI 285 (472)
Q Consensus 211 i~~~~~~nv~I~~v~i~ns~~~----~i~-~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i 285 (472)
-.+...+++..++|+|+|.... .+- ....+.+.+.+|+|.+.. |-+.... .+-.++||+|...=|-| +
T Consensus 96 Tv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~Q-----DTL~~~~-gr~yf~~c~IeG~VDFI-F 168 (317)
T PLN02773 96 TVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQ-----DTLYLHY-GKQYLRDCYIEGSVDFI-F 168 (317)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeeccc-----ceeEeCC-CCEEEEeeEEeecccEE-e
Confidence 3445677888888888886321 111 122455566666665422 3343332 24555666665543432 2
Q ss_pred CCCceeEEEEeeeecC
Q 012057 286 GTGCSDVDIADVTCGP 301 (472)
Q Consensus 286 ~s~s~nI~I~n~~~~~ 301 (472)
+ .-...++||++..
T Consensus 169 G--~g~a~Fe~c~i~s 182 (317)
T PLN02773 169 G--NSTALLEHCHIHC 182 (317)
T ss_pred e--ccEEEEEeeEEEE
Confidence 2 2345566666543
No 87
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=86.70 E-value=41 Score=35.04 Aligned_cols=109 Identities=28% Similarity=0.346 Sum_probs=50.0
Q ss_pred ceeEEEEceEE-ecCCceEEeCCC-----------------------ceeEEEEeeeecCCCcceecccCccCCCCcEEE
Q 012057 266 TKSVGIYNSMI-SNGDDCISIGTG-----------------------CSDVDIADVTCGPSHGISIGSLGAHYSQACVSN 321 (472)
Q Consensus 266 s~nV~I~n~~i-~~gDD~I~i~s~-----------------------s~nI~I~n~~~~~~~gi~iGs~~~~~~~~~i~n 321 (472)
+-|..++|+.. +.-.|++.+++. -.|-.|+|+...++.|+.+|..| ..+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEee
Confidence 44555665553 346677777663 14667777777777777776544 3455555
Q ss_pred EEEEeEEEecCCceEEEEeecCCCceeeeEEEEeEEEEccCee-EEEEeeccCCccccCCCCceEEEeEEEEeEEEE
Q 012057 322 ITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNC-INIDQYYCLSKECLNQTSAVFVTGITYRNIKGT 397 (472)
Q Consensus 322 I~i~n~~i~~~~~gi~I~~~~g~~g~v~nI~f~Ni~~~~v~~~-i~I~~~~~~~~~~~~~~~~~~i~nI~f~nI~~t 397 (472)
|++++|- ..|+.+.+. |=.|.||++-+.... ....|.|+. ..-.++.|++-+|+.+
T Consensus 340 i~~~d~~----g~G~~~~~~--------~~~ftNitvId~N~~n~~~nQI~i~--------G~~~vnGir~igi~~~ 396 (549)
T PF09251_consen 340 ITVQDCA----GAGIFIRGT--------NKVFTNITVIDTNTDNFNANQIYIE--------GACIVNGIRLIGIKPT 396 (549)
T ss_dssp EEEES-S----SESEEEECC--------S-EEEEEEEES-STT-SSSECEEE---------SS-EEEEEEE-ECC-S
T ss_pred EEeeccc----CCceEEeec--------CCceeeeEEEeccccCCCCceEEEe--------cceEEcceeEeeeecc
Confidence 5555542 235655442 234666666543210 001222222 2236677777777643
No 88
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=84.78 E-value=8.4 Score=39.88 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=37.5
Q ss_pred ceeEEEEeeeecCC--CcceecccCc--c-------------CCCCcEEEEEEEeEEEecCCceEEEEeecCCCceeeeE
Q 012057 289 CSDVDIADVTCGPS--HGISIGSLGA--H-------------YSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDL 351 (472)
Q Consensus 289 s~nI~I~n~~~~~~--~gi~iGs~~~--~-------------~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~~g~v~nI 351 (472)
+.|..++|...-.. +|+.+|+... . .-..--.|=.|+|+...++ .|+-+. |+|..++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 89999999875432 5666665421 1 1122235667889988887 666553 46777888888
Q ss_pred EEEeEEEE
Q 012057 352 SFENIQME 359 (472)
Q Consensus 352 ~f~Ni~~~ 359 (472)
+.++..-.
T Consensus 341 ~~~d~~g~ 348 (549)
T PF09251_consen 341 TVQDCAGA 348 (549)
T ss_dssp EEES-SSE
T ss_pred EeecccCC
Confidence 87766533
No 89
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=80.28 E-value=8 Score=35.62 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=23.5
Q ss_pred ceeEEEEeeeecCC---Ccce--ecccCccCCCCcEEEEEEEeEEEecCCc
Q 012057 289 CSDVDIADVTCGPS---HGIS--IGSLGAHYSQACVSNITVRNAIIRESDN 334 (472)
Q Consensus 289 s~nI~I~n~~~~~~---~gi~--iGs~~~~~~~~~i~nI~i~n~~i~~~~~ 334 (472)
.+||.|.++.|+.. ..+. -|-. ..++.|..|||++|.+..+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv-----~sGF~ntlIENNVfDG~y~ 78 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIV-----TSGFYNTLIENNVFDGVYH 78 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEE-----eccccccEEEeeeeccccc
Confidence 45777777777652 1111 1111 2355677888888887744
No 90
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=78.80 E-value=37 Score=34.02 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=65.2
Q ss_pred EEeeeeEEEeceEEecCCCC------eeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeC
Q 012057 213 FFMSSNLVVSGLTIQNSPQF------HMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIG 286 (472)
Q Consensus 213 ~~~~~nv~I~~v~i~ns~~~------~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~ 286 (472)
....+++.+++|+|.|.... .+.. ..+.+.+.+|.|.+. .|-+.... .+..++||.|...-|-| ++
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~-----QDTL~~~~-~r~y~~~c~IeG~vDFI-fG 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGY-----QDTLYANG-GRQYFKNCYIEGNVDFI-FG 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-S-----TT-EEE-S-SEEEEES-EEEESEEEE-EE
T ss_pred cccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccc-----cceeeecc-ceeEEEeeEEEecCcEE-EC
Confidence 34578899999999886322 1332 356777888888763 25555443 35677788877765544 22
Q ss_pred CCceeEEEEeeeecCC-----CcceecccCccCCCCcEEEEEEEeEEEecCC--------ceEEEEeecCCCceeeeEEE
Q 012057 287 TGCSDVDIADVTCGPS-----HGISIGSLGAHYSQACVSNITVRNAIIRESD--------NGLRIKTWQGGTGCVSDLSF 353 (472)
Q Consensus 287 s~s~nI~I~n~~~~~~-----~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~--------~gi~I~~~~g~~g~v~nI~f 353 (472)
. ....++||++..- ..-.|=..++ .+...-..+.|.||++.... ....+.--+ +.-..+.|
T Consensus 155 ~--~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW---~~~s~vvf 228 (298)
T PF01095_consen 155 N--GTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPW---GPYSRVVF 228 (298)
T ss_dssp S--SEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--S---SEETEEEE
T ss_pred C--eeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEeEEecCccccccccceeEEecCcc---cceeeEEE
Confidence 2 3556777776531 1111111110 01122346677788777542 122332111 12345677
Q ss_pred EeEEEEccCe
Q 012057 354 ENIQMENVRN 363 (472)
Q Consensus 354 ~Ni~~~~v~~ 363 (472)
.|..|.+.-.
T Consensus 229 ~~t~m~~~I~ 238 (298)
T PF01095_consen 229 INTYMDDHIN 238 (298)
T ss_dssp ES-EE-TTEE
T ss_pred EccccCCeee
Confidence 7777776533
No 91
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=73.11 E-value=64 Score=35.36 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=58.5
Q ss_pred ccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCC
Q 012057 238 GCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQ 316 (472)
Q Consensus 238 ~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~ 316 (472)
..+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-..+ ..-.++||++.+.-.+-+|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------- 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------- 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc-------
Confidence 345667777777664321122333332 45677777777777666555444 23457777777666666654
Q ss_pred CcEEEEEEEeEEEecCC----ceEEEEeecCC--CceeeeEEEEeEEEEcc
Q 012057 317 ACVSNITVRNAIIRESD----NGLRIKTWQGG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 317 ~~i~nI~i~n~~i~~~~----~gi~I~~~~g~--~g~v~nI~f~Ni~~~~v 361 (472)
-.+.|+||.+.-.. ..-.|.. +++ ...-..+.|.|+++...
T Consensus 414 ---a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 414 ---SAVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred ---ceEEEeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEccEEecC
Confidence 24556666664221 0112222 111 12234566777777653
No 92
>PLN02197 pectinesterase
Probab=71.25 E-value=78 Score=34.85 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=42.4
Q ss_pred EEEeeeeEEEeceEEecCCCC----eeee-eccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeC
Q 012057 212 RFFMSSNLVVSGLTIQNSPQF----HMKF-DGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIG 286 (472)
Q Consensus 212 ~~~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~ 286 (472)
.....+++..++|+|.|.... .+-+ ...+...+.+|.|.... |-+.... .+-.++||+|...=|-| ++
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG 431 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ-----DTLYVNN-GRQFYRNIVVSGTVDFI-FG 431 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-----cceEecC-CCEEEEeeEEEeccccc-cc
Confidence 344577788888888875321 2222 23556666666666532 3344332 34466666666543322 22
Q ss_pred CCceeEEEEeeeec
Q 012057 287 TGCSDVDIADVTCG 300 (472)
Q Consensus 287 s~s~nI~I~n~~~~ 300 (472)
.....++||++.
T Consensus 432 --~a~avfq~C~i~ 443 (588)
T PLN02197 432 --KSATVIQNSLIV 443 (588)
T ss_pred --ceeeeeecCEEE
Confidence 234566666654
No 93
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=68.68 E-value=42 Score=35.03 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=7.8
Q ss_pred EEEEEeeeeEEEe
Q 012057 210 LIRFFMSSNLVVS 222 (472)
Q Consensus 210 ~i~~~~~~nv~I~ 222 (472)
.+.++.|+|.+|+
T Consensus 355 svyIykC~~s~iq 367 (480)
T KOG2675|consen 355 SVYIYKCSNSTIQ 367 (480)
T ss_pred eEEEEeccceEEE
Confidence 4666666665553
No 94
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=67.52 E-value=1.1e+02 Score=33.03 Aligned_cols=113 Identities=10% Similarity=0.120 Sum_probs=76.4
Q ss_pred eccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCC
Q 012057 237 DGCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYS 315 (472)
Q Consensus 237 ~~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~ 315 (472)
...+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-... ..-.++||++.+.-.+-+|.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~------ 338 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGN------ 338 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEecc------
Confidence 3457889999999986432233445543 57899999999999888777665 34589999999888887875
Q ss_pred CCcEEEEEEEeEEEecCCc--e--EEEEeecCC--CceeeeEEEEeEEEEccC
Q 012057 316 QACVSNITVRNAIIRESDN--G--LRIKTWQGG--TGCVSDLSFENIQMENVR 362 (472)
Q Consensus 316 ~~~i~nI~i~n~~i~~~~~--g--i~I~~~~g~--~g~v~nI~f~Ni~~~~v~ 362 (472)
....|+||++.-... + -.|.. +++ ...-..+.|.|+++....
T Consensus 339 ----a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 ----AAAVFQNCYLFLRRPHGKSYNVILA-NGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ----cceeecccEEEEecCCCCCceEEEe-cCCCCCCCCceEEEEeeEEecCC
Confidence 245688888863211 1 12322 221 123357889999998653
No 95
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=67.48 E-value=28 Score=32.12 Aligned_cols=77 Identities=25% Similarity=0.409 Sum_probs=48.7
Q ss_pred eeEEEEeeeecCC--Cccee-cccCccCCCCcEEEEEEEeEEEecCCceEEEEeecCC--CceeeeEEEEeEEEEccCee
Q 012057 290 SDVDIADVTCGPS--HGISI-GSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGG--TGCVSDLSFENIQMENVRNC 364 (472)
Q Consensus 290 ~nI~I~n~~~~~~--~gi~i-Gs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~~~~g~--~g~v~nI~f~Ni~~~~v~~~ 364 (472)
.||.|.|++++.. -||-+ |..+. .+....+||+|+++.|.++..--.+. |-|+ .....|.++||..|+++-.+
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~-ysk~~a~nVhIhhN~fY~tGtn~~~~-wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGS-YSKDSAKNVHIHHNIFYDTGTNPNID-WVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCC-CCccccccEEEECcEeecCCcCCCCc-eeeeEEeccccccEEEeeeecccccc
Confidence 4789999999885 46544 33222 24456679999999999874321221 1111 11356779999999998765
Q ss_pred EEEE
Q 012057 365 INID 368 (472)
Q Consensus 365 i~I~ 368 (472)
-...
T Consensus 80 ai~~ 83 (198)
T PF08480_consen 80 AIAQ 83 (198)
T ss_pred eEEE
Confidence 4443
No 96
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=65.56 E-value=1.3e+02 Score=32.59 Aligned_cols=68 Identities=6% Similarity=0.144 Sum_probs=31.8
Q ss_pred cccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceec
Q 012057 239 CEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIG 308 (472)
Q Consensus 239 ~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iG 308 (472)
.+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-..+ ..-.+++|++.+.-.+-+|
T Consensus 312 ~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG 380 (529)
T PLN02170 312 GDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFG 380 (529)
T ss_pred cCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceecc
Confidence 34444555555543211112223222 34556666666666555554433 2335566666655555554
No 97
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=65.30 E-value=1.1e+02 Score=33.32 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=19.4
Q ss_pred ceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceec
Q 012057 266 TKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIG 308 (472)
Q Consensus 266 s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iG 308 (472)
+.++.++||.|...-|-+-..+ ..-.++||++.+.-.+-+|
T Consensus 346 ~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG 386 (537)
T PLN02506 346 SDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFG 386 (537)
T ss_pred CCcEEEEcceeecccccceecC--CceEEEeeEEecccceEcc
Confidence 4455555555555444443332 2234555555554444443
No 98
>PLN02314 pectinesterase
Probab=65.00 E-value=1.1e+02 Score=33.64 Aligned_cols=111 Identities=10% Similarity=0.143 Sum_probs=59.0
Q ss_pred ccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCC
Q 012057 238 GCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQ 316 (472)
Q Consensus 238 ~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~ 316 (472)
..+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-..+ ..-.++||++.+.-.+-+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------- 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN------- 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC-------
Confidence 455666666666664321122334332 45677777777777666665544 23467777777766666653
Q ss_pred CcEEEEEEEeEEEecCC----ceEEEEeecCC--CceeeeEEEEeEEEEcc
Q 012057 317 ACVSNITVRNAIIRESD----NGLRIKTWQGG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 317 ~~i~nI~i~n~~i~~~~----~gi~I~~~~g~--~g~v~nI~f~Ni~~~~v 361 (472)
-...|+||.+.--. ..-.|.. +++ ...-..+.|.|+++...
T Consensus 434 ---a~avf~~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 480 (586)
T PLN02314 434 ---AAVVFQNCNIQPRQPLPNQFNTITA-QGKKDPNQNTGISIQRCTISAF 480 (586)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEec-CCCCCCCCCCEEEEEeeEEecC
Confidence 24556666665321 0012222 221 12234566777777654
No 99
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=64.95 E-value=25 Score=36.89 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=23.5
Q ss_pred cEEEEeEEEeCCC--CCCCCCceeee------cceeEEEEceEEecCCc---eEEeCCCceeEEEEeeeecCCCc
Q 012057 241 GVMIDKLSISSPK--LSPNTDGIHIE------NTKSVGIYNSMISNGDD---CISIGTGCSDVDIADVTCGPSHG 304 (472)
Q Consensus 241 nv~I~~~~i~~~~--~~~n~DGI~i~------~s~nV~I~n~~i~~gDD---~I~i~s~s~nI~I~n~~~~~~~g 304 (472)
+-.|++..|...+ .+.....|++. ...+.+|+++.|...|. -|++|+ .+-+|++++|..+.|
T Consensus 165 ~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvKS--~~N~ir~Ntf~es~G 237 (425)
T PF14592_consen 165 YHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVKS--SDNTIRNNTFRESQG 237 (425)
T ss_dssp --EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEES--BT-EEES-EEES-SS
T ss_pred CceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhhcCCceeEEEeec--CCceEeccEEEeccc
Confidence 4456666665321 12233446554 23567777777765332 556666 333455555555443
No 100
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=64.28 E-value=84 Score=35.14 Aligned_cols=112 Identities=9% Similarity=0.089 Sum_probs=78.6
Q ss_pred eccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCC
Q 012057 237 DGCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYS 315 (472)
Q Consensus 237 ~~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~ 315 (472)
...+++..+|++|.|.........+.+. .+.+..++||.|...-|-+-... ..-.++||++.+.-.+-+|.
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 405 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------ 405 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC------
Confidence 3468899999999986533333455554 57899999999999888776654 45689999999988877765
Q ss_pred CCcEEEEEEEeEEEecCC----ceEEEEeecCC--CceeeeEEEEeEEEEcc
Q 012057 316 QACVSNITVRNAIIRESD----NGLRIKTWQGG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 316 ~~~i~nI~i~n~~i~~~~----~gi~I~~~~g~--~g~v~nI~f~Ni~~~~v 361 (472)
-...|+||.+.--. ..-.|.. +++ ...-..+.|.|+++...
T Consensus 406 ----a~avfq~C~I~~r~~~~~~~~~ITA-qgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ----AAAVFQNCTLLVRKPLLNQACPITA-HGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ----ceEEEEccEEEEccCCCCCceeEec-CCCCCCCCCceEEEEeeEEecC
Confidence 25678999887421 1223432 222 12345788999999875
No 101
>PLN02916 pectinesterase family protein
Probab=64.05 E-value=1.6e+02 Score=31.86 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=11.9
Q ss_pred EEEEeeeeEEEeceEEecC
Q 012057 211 IRFFMSSNLVVSGLTIQNS 229 (472)
Q Consensus 211 i~~~~~~nv~I~~v~i~ns 229 (472)
-.....+++..+||+|.|.
T Consensus 271 T~~v~~~~F~A~nitf~Nt 289 (502)
T PLN02916 271 TFGVSGDGFWARDITFENT 289 (502)
T ss_pred EEEEECCCEEEEeeEEEeC
Confidence 3344556677777777765
No 102
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=63.18 E-value=1.5e+02 Score=32.25 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=36.3
Q ss_pred EEEeeeeEEEeceEEecCCC----Ceeee-eccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeC
Q 012057 212 RFFMSSNLVVSGLTIQNSPQ----FHMKF-DGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIG 286 (472)
Q Consensus 212 ~~~~~~nv~I~~v~i~ns~~----~~i~~-~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~ 286 (472)
.....+++..+||+|.|... ..+-+ ...+...+.+|.|.... |-+.... .+-..+||+|...=|-| ++
T Consensus 288 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG 360 (520)
T PLN02201 288 FAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-----DTLYTHT-MRQFYRECRITGTVDFI-FG 360 (520)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----CeeEeCC-CCEEEEeeEEeecccEE-ec
Confidence 33446667777777766532 11111 22445555555555421 3333322 23444555555433322 21
Q ss_pred CCceeEEEEeeeec
Q 012057 287 TGCSDVDIADVTCG 300 (472)
Q Consensus 287 s~s~nI~I~n~~~~ 300 (472)
.-...++||++.
T Consensus 361 --~a~avf~~C~i~ 372 (520)
T PLN02201 361 --DATAVFQNCQIL 372 (520)
T ss_pred --CceEEEEccEEE
Confidence 234555555544
No 103
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=62.83 E-value=1.4e+02 Score=33.00 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=43.7
Q ss_pred ccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCC
Q 012057 238 GCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQ 316 (472)
Q Consensus 238 ~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~ 316 (472)
..+++..+|++|.|.........+.+. .+.+..++||.|...-|-+-... ..-.++||++.+.-.+-+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 445666666666654221122233332 45667777777766656554433 33566777776665555543
Q ss_pred CcEEEEEEEeEEEe
Q 012057 317 ACVSNITVRNAIIR 330 (472)
Q Consensus 317 ~~i~nI~i~n~~i~ 330 (472)
-...|+||.+.
T Consensus 441 ---a~avf~~C~i~ 451 (596)
T PLN02745 441 ---AAAIFQNCLIF 451 (596)
T ss_pred ---eeEEEEecEEE
Confidence 24556666665
No 104
>PLN02480 Probable pectinesterase
Probab=62.47 E-value=1.6e+02 Score=30.13 Aligned_cols=110 Identities=11% Similarity=0.046 Sum_probs=76.1
Q ss_pred cccEEEEeEEEeCCCC-----CCCCCceee-ecceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCc
Q 012057 239 CEGVMIDKLSISSPKL-----SPNTDGIHI-ENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGA 312 (472)
Q Consensus 239 ~~nv~I~~~~i~~~~~-----~~n~DGI~i-~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~ 312 (472)
.++++++|++|.+... .....++.+ ..++++.++||.|...-|-+-... ..-.++||++.+.-.+-+|.
T Consensus 131 a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~--- 205 (343)
T PLN02480 131 APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR--- 205 (343)
T ss_pred CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc---
Confidence 5789999999998631 112346666 368899999999999888775443 46789999999887877765
Q ss_pred cCCCCcEEEEEEEeEEEecCC------ceEEEEeecCCCceeeeEEEEeEEEEcc
Q 012057 313 HYSQACVSNITVRNAIIRESD------NGLRIKTWQGGTGCVSDLSFENIQMENV 361 (472)
Q Consensus 313 ~~~~~~i~nI~i~n~~i~~~~------~gi~I~~~~g~~g~v~nI~f~Ni~~~~v 361 (472)
-...|+||++.-.. .|. |..+......-....|.|+++...
T Consensus 206 -------g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 -------GRSIFHNCEIFVIADRRVKIYGS-ITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred -------eeEEEEccEEEEecCCCCCCceE-EEcCCCCCCCCCEEEEECCEEccc
Confidence 26678999887532 132 333211112335678999999864
No 105
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=60.30 E-value=2.4e+02 Score=30.64 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=38.5
Q ss_pred EEEeeeeEEEeceEEecCCCC----eeee-eccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeC
Q 012057 212 RFFMSSNLVVSGLTIQNSPQF----HMKF-DGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIG 286 (472)
Q Consensus 212 ~~~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~ 286 (472)
.....+++..+||+|.|.... .+-+ ...+.+.+.+|.|.... |-+.... .+-..++|+|...=|-| ++
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~IeGtVDFI-FG 372 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVHS-AKQFYRECDIYGTIDFI-FG 372 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccCC-CceEEEeeEEeccccee-cc
Confidence 344566777777777775321 1222 22455566666665522 3333222 23455566665433322 22
Q ss_pred CCceeEEEEeeeec
Q 012057 287 TGCSDVDIADVTCG 300 (472)
Q Consensus 287 s~s~nI~I~n~~~~ 300 (472)
.....++||++.
T Consensus 373 --~a~avFq~C~i~ 384 (530)
T PLN02933 373 --NAAVVFQNCSLY 384 (530)
T ss_pred --CceEEEeccEEE
Confidence 234555555553
No 106
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=60.04 E-value=1.4e+02 Score=32.54 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=20.9
Q ss_pred ceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceec
Q 012057 266 TKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIG 308 (472)
Q Consensus 266 s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iG 308 (472)
+.+..++||.|...-|-+-..+ ..-.++||++++.-.+-+|
T Consensus 350 ~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 350 ADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFG 390 (548)
T ss_pred CCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceecc
Confidence 4455555555555555444433 2235555555555454444
No 107
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.21 E-value=9.4 Score=31.42 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHHHhhhhcccccccc
Q 012057 1 MESIRELLLILLAVILLVQNLSNVEAR 27 (472)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (472)
|. ++.|++|.+++.++|++++-|.+|
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhhH
Confidence 66 555555544444444433445555
No 108
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=59.07 E-value=1.1e+02 Score=33.27 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=43.5
Q ss_pred cccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCCC
Q 012057 239 CEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQA 317 (472)
Q Consensus 239 ~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~~ 317 (472)
.+++..+|++|.+.........+.+. .+.++.++||.|...-|-+-..+ ..-.++||++++.-.+-+|.
T Consensus 316 ~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 385 (541)
T PLN02416 316 GEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN-------- 385 (541)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc--------
Confidence 45555555555554321122333332 35667777777776666554443 33466777776666655654
Q ss_pred cEEEEEEEeEEEec
Q 012057 318 CVSNITVRNAIIRE 331 (472)
Q Consensus 318 ~i~nI~i~n~~i~~ 331 (472)
-...|+||.+.-
T Consensus 386 --a~avfq~c~i~~ 397 (541)
T PLN02416 386 --AAVVFQACNIVS 397 (541)
T ss_pred --ceEEEeccEEEE
Confidence 245566666643
No 109
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=57.57 E-value=1.4e+02 Score=33.02 Aligned_cols=111 Identities=8% Similarity=0.142 Sum_probs=62.5
Q ss_pred ccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCC
Q 012057 238 GCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQ 316 (472)
Q Consensus 238 ~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~ 316 (472)
..+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-..+ ..-.+++|++.+.-.+-+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~------- 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGN------- 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccc-------
Confidence 345667777777765322222334433 46677788888877777665554 23477788887776666654
Q ss_pred CcEEEEEEEeEEEecCCc--e--EEEEeecCC--CceeeeEEEEeEEEEcc
Q 012057 317 ACVSNITVRNAIIRESDN--G--LRIKTWQGG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 317 ~~i~nI~i~n~~i~~~~~--g--i~I~~~~g~--~g~v~nI~f~Ni~~~~v 361 (472)
....|+||.+.-... | -.|.. +++ ...-..+.|.|+++...
T Consensus 431 ---a~avfq~c~i~~r~~~~~~~~~iTA-qgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 431 ---AAAVLQDCDINARRPNSGQKNMVTA-QGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred ---eeEEEEccEEEEecCCCCCcceEEe-cCCCCCCCCceEEEEecEEecC
Confidence 255677777763210 1 12222 221 12234577778777654
No 110
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=56.54 E-value=1.6e+02 Score=32.18 Aligned_cols=113 Identities=10% Similarity=0.091 Sum_probs=78.0
Q ss_pred eeccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccC
Q 012057 236 FDGCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHY 314 (472)
Q Consensus 236 ~~~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~ 314 (472)
....+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-..+ ..-.++||++++.-.+-+|.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~----- 381 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN----- 381 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec-----
Confidence 34458899999999986432233455554 57889999999999888776665 34689999999988888875
Q ss_pred CCCcEEEEEEEeEEEecCC----ceEEEEeecCC--CceeeeEEEEeEEEEcc
Q 012057 315 SQACVSNITVRNAIIRESD----NGLRIKTWQGG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 315 ~~~~i~nI~i~n~~i~~~~----~gi~I~~~~g~--~g~v~nI~f~Ni~~~~v 361 (472)
-...|+||.+.--. ..-.|.. +++ ...-..+.|.|+++...
T Consensus 382 -----a~avfq~c~i~~r~~~~~~~~~iTA-~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 -----AAAIFQNCNLYARKPMANQKNAFTA-QGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred -----ceeeeeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEecEEecC
Confidence 36678999886421 1112332 221 12335688999999864
No 111
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=54.53 E-value=1.5e+02 Score=32.65 Aligned_cols=111 Identities=9% Similarity=0.129 Sum_probs=61.6
Q ss_pred ccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCC
Q 012057 238 GCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQ 316 (472)
Q Consensus 238 ~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~ 316 (472)
..+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-..+ ..-.++||++.+.-.+-+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc-------
Confidence 456666777777664321122344443 46677788888877766665544 34467777777766666654
Q ss_pred CcEEEEEEEeEEEecCC----ceEEEEeecCC--CceeeeEEEEeEEEEcc
Q 012057 317 ACVSNITVRNAIIRESD----NGLRIKTWQGG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 317 ~~i~nI~i~n~~i~~~~----~gi~I~~~~g~--~g~v~nI~f~Ni~~~~v 361 (472)
-...|+||.+.--. ..-.|.. +++ ...-..+.|.|+++...
T Consensus 429 ---a~avfq~C~i~~~~~~~~~~~~ITA-q~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 ---AAVVLQNCSIYARKPMAQQKNTITA-QNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ---ceeEEeccEEEEecCCCCCceEEEe-cCCCCCCCCcEEEEEeeEEecC
Confidence 24557777775321 1122322 221 12234567777777653
No 112
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=52.53 E-value=13 Score=41.49 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=4.5
Q ss_pred EeeeecccC
Q 012057 79 DVRDYGAVG 87 (472)
Q Consensus 79 ~V~dfGA~g 87 (472)
-|..||-++
T Consensus 608 PvlP~gLkp 616 (1102)
T KOG1924|consen 608 PVLPFGLKP 616 (1102)
T ss_pred ccCCCCCCc
Confidence 355566443
No 113
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=50.41 E-value=3.5e+02 Score=29.25 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=36.6
Q ss_pred EEeeeeEEEeceEEecCCCC----eeee-eccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCCceEEeCC
Q 012057 213 FFMSSNLVVSGLTIQNSPQF----HMKF-DGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGT 287 (472)
Q Consensus 213 ~~~~~nv~I~~v~i~ns~~~----~i~~-~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gDD~I~i~s 287 (472)
....+++..+||+|+|...- .+-+ ...+...+.+|.|.... |-+... +.+-..++|+|...=|-| +
T Consensus 280 ~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ-----DTLy~~-~~RqyyrdC~I~GtVDFI-F-- 350 (509)
T PLN02488 280 ASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ-----DALYPH-RDRQFYRECFITGTVDFI-C-- 350 (509)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC-----cceeeC-CCCEEEEeeEEeeccceE-e--
Confidence 34456677777777765321 1211 22455555555555421 333322 234455555555433322 1
Q ss_pred CceeEEEEeeeec
Q 012057 288 GCSDVDIADVTCG 300 (472)
Q Consensus 288 ~s~nI~I~n~~~~ 300 (472)
|.-.+.++||++.
T Consensus 351 G~a~avFq~C~I~ 363 (509)
T PLN02488 351 GNAAAVFQFCQIV 363 (509)
T ss_pred cceEEEEEccEEE
Confidence 2244555555554
No 114
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=49.89 E-value=2.3e+02 Score=30.90 Aligned_cols=68 Identities=6% Similarity=0.054 Sum_probs=33.2
Q ss_pred cccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceec
Q 012057 239 CEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIG 308 (472)
Q Consensus 239 ~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iG 308 (472)
.+++..+|++|.+.........+.+. .+.+..++||.|...-|-+-..+ ..-.++||++++.-.+-+|
T Consensus 311 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG 379 (539)
T PLN02995 311 GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFG 379 (539)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEec
Confidence 44555555555553211112333332 34566666666666555444333 2235666666655555554
No 115
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=48.31 E-value=46 Score=33.53 Aligned_cols=40 Identities=28% Similarity=0.204 Sum_probs=25.3
Q ss_pred EEeeeecccCCCCcchHHHHHHHHHHHh--------hcC--CcEEEecCC
Q 012057 78 FDVRDYGAVGDGSADDTAAFRAAWKAAC--------AVE--AGVVLAPSD 117 (472)
Q Consensus 78 ~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~--------~~~--g~~V~iP~G 117 (472)
+-|-.-||.|+--+---+|+++|+..-. +.+ ..+|+||+-
T Consensus 82 ~avvsa~a~G~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e~v~Vp~~ 131 (405)
T COG4677 82 FAVVSAGAQGVTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQETVYVPAA 131 (405)
T ss_pred eeEEecCCCccchHHHHHHHhhhcccCCCceEEEEEccceeceeEEecCC
Confidence 4445567777655556688888876532 223 467888875
No 116
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=47.39 E-value=76 Score=32.70 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=8.6
Q ss_pred CCCceEEeeeecc
Q 012057 73 STDCIFDVRDYGA 85 (472)
Q Consensus 73 ~~~~~~~V~dfGA 85 (472)
..++.-.|..|++
T Consensus 108 ~~~~~~pv~a~~~ 120 (376)
T PRK13855 108 PRPEETPIFAYSS 120 (376)
T ss_pred cccccCceEEecc
Confidence 4556667888854
No 117
>PLN02432 putative pectinesterase
Probab=46.96 E-value=3.1e+02 Score=27.42 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=22.0
Q ss_pred ceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecc
Q 012057 266 TKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGS 309 (472)
Q Consensus 266 s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs 309 (472)
..++.++||.|...-|.+-... ..-.++||++.+.-.+-+|.
T Consensus 120 gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~ 161 (293)
T PLN02432 120 GDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGN 161 (293)
T ss_pred CCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecC
Confidence 4556666666665555443332 23456666666555555543
No 118
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=43.75 E-value=29 Score=19.79 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=5.1
Q ss_pred eEEEEceEEec
Q 012057 268 SVGIYNSMISN 278 (472)
Q Consensus 268 nV~I~n~~i~~ 278 (472)
+++|++|.|..
T Consensus 3 ~~~i~~n~i~~ 13 (26)
T smart00710 3 NVTIENNTIRN 13 (26)
T ss_pred CEEEECCEEEe
Confidence 34444444444
No 119
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=43.52 E-value=22 Score=25.96 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhcccccccccccc
Q 012057 7 LLLILLAVILLVQNLSNVEARYHHH 31 (472)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (472)
|++|++.++++++.++.-+++-|+|
T Consensus 17 lLiliis~~f~lI~~l~qq~~~y~H 41 (61)
T PF06692_consen 17 LLILIISFVFFLITSLGQQGNTYVH 41 (61)
T ss_pred HHHHHHHHHHHHHhhhccCCCeeEE
Confidence 3333333333333223345554433
No 120
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=41.83 E-value=29 Score=37.87 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=72.4
Q ss_pred eccccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCC
Q 012057 237 DGCEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYS 315 (472)
Q Consensus 237 ~~~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~ 315 (472)
...+++..+|++|.|.........+.+. .+.++.++||.|...-|-+-..+ ..-.+++|++.+.-.+-+|.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~------ 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGN------ 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecC------
Confidence 3456788888888876422223445443 57889999999998888776655 34578999998887887865
Q ss_pred CCcEEEEEEEeEEEecC------Cce--EEEEeecC--CCceeeeEEEEeEEEEcc
Q 012057 316 QACVSNITVRNAIIRES------DNG--LRIKTWQG--GTGCVSDLSFENIQMENV 361 (472)
Q Consensus 316 ~~~i~nI~i~n~~i~~~------~~g--i~I~~~~g--~~g~v~nI~f~Ni~~~~v 361 (472)
-...|+||.+.-. ..| -.|.. ++ ....-..+.|.|+++...
T Consensus 399 ----a~avfq~c~i~~~~~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 399 ----SAAVFQDCAILIAPRQLKPEKGENNAVTA-HGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred ----ceEEEEccEEEEeccccCCCCCCceEEEe-CCCCCCCCCceEEEEccEEecC
Confidence 2667888888632 111 12322 22 112334678999998764
No 121
>PRK09752 adhesin; Provisional
Probab=41.13 E-value=7.1e+02 Score=29.92 Aligned_cols=63 Identities=19% Similarity=0.113 Sum_probs=36.2
Q ss_pred cccEEEEeEEEeCCCCCCCCCceeeecce-----eEEEEceEEecCC----ceEEeCCCceeEEEEeeeecC
Q 012057 239 CEGVMIDKLSISSPKLSPNTDGIHIENTK-----SVGIYNSMISNGD----DCISIGTGCSDVDIADVTCGP 301 (472)
Q Consensus 239 ~~nv~I~~~~i~~~~~~~n~DGI~i~~s~-----nV~I~n~~i~~gD----D~I~i~s~s~nI~I~n~~~~~ 301 (472)
...+.|.++.|.+.....+.-+|...+.. .+.|.|+.|.+.. .+=+|.....++.|.||.|.+
T Consensus 120 ~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~ng~vtIsnS~F~n 191 (1250)
T PRK09752 120 NSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDN 191 (1250)
T ss_pred cceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEccCcEEEEeeEEeC
Confidence 34477888888876543344557665432 3778888887642 111222223467777777654
No 122
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=41.08 E-value=1.7e+02 Score=32.06 Aligned_cols=110 Identities=8% Similarity=0.081 Sum_probs=76.2
Q ss_pred cccEEEEeEEEeCCCCCCCCCceeee-cceeEEEEceEEecCCceEEeCCCceeEEEEeeeecCCCcceecccCccCCCC
Q 012057 239 CEGVMIDKLSISSPKLSPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGPSHGISIGSLGAHYSQA 317 (472)
Q Consensus 239 ~~nv~I~~~~i~~~~~~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~~~~~gi~iGs~~~~~~~~ 317 (472)
.+++..+|++|.+........++.+. .+.+..++||.|...-|-+-..+ ..-.++||++++.-.+-+|.
T Consensus 339 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 408 (566)
T PLN02713 339 GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN-------- 408 (566)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc--------
Confidence 57889999999986432233455553 57899999999999888887765 34689999999888888875
Q ss_pred cEEEEEEEeEEEecCC----ceEEEEeecCC--CceeeeEEEEeEEEEcc
Q 012057 318 CVSNITVRNAIIRESD----NGLRIKTWQGG--TGCVSDLSFENIQMENV 361 (472)
Q Consensus 318 ~i~nI~i~n~~i~~~~----~gi~I~~~~g~--~g~v~nI~f~Ni~~~~v 361 (472)
-.+.|+||.+.-.. ..-.|.. +++ ...-..+.|.|+++...
T Consensus 409 --a~avfq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 --AAVVFQNCNLYPRLPMQGQFNTITA-QGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred --ceEEEeccEEEEecCCCCCcceeee-cCCCCCCCCCEEEEEcCEEecC
Confidence 36778999886431 1112322 221 12335688999999864
No 123
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=40.03 E-value=1.9e+02 Score=24.32 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=6.8
Q ss_pred eeEEEeceEEec
Q 012057 217 SNLVVSGLTIQN 228 (472)
Q Consensus 217 ~nv~I~~v~i~n 228 (472)
.+++++|+++.+
T Consensus 45 ~~~~~~G~~~~~ 56 (146)
T smart00722 45 NDVRVDGITIGG 56 (146)
T ss_pred CCCEEECeEEEe
Confidence 344566666655
No 124
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=39.13 E-value=26 Score=40.79 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=5.0
Q ss_pred ceeeEEEEEEEE
Q 012057 414 PCTKITMAEVEL 425 (472)
Q Consensus 414 ~~~~i~~~ni~~ 425 (472)
++.++.|+|-.+
T Consensus 381 pi~~~ql~~h~~ 392 (2365)
T COG5178 381 PILGVQLDNHPY 392 (2365)
T ss_pred cccccccccccc
Confidence 344444444333
No 125
>PRK09752 adhesin; Provisional
Probab=38.22 E-value=7.8e+02 Score=29.59 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=62.5
Q ss_pred EEEEEeeeeEEEeceEEecCC----CCeeeeeccc-----cEEEEeEEEeCCCCC-CCCCceeeecceeEEEEceEEecC
Q 012057 210 LIRFFMSSNLVVSGLTIQNSP----QFHMKFDGCE-----GVMIDKLSISSPKLS-PNTDGIHIENTKSVGIYNSMISNG 279 (472)
Q Consensus 210 ~i~~~~~~nv~I~~v~i~ns~----~~~i~~~~~~-----nv~I~~~~i~~~~~~-~n~DGI~i~~s~nV~I~n~~i~~g 279 (472)
+|.-.....++|.++.|.+-. .-.|...+.. .+.|.++.|.+.... .+.-+|... ..++.|.||.|.+.
T Consensus 114 AIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~-ng~vtIsnS~F~nN 192 (1250)
T PRK09752 114 AIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTI-NNDVYLSDVIFDNN 192 (1250)
T ss_pred EEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEc-cCcEEEEeeEEeCC
Confidence 443333445778788776532 2235554432 377888888875421 123346543 34789999999864
Q ss_pred C----------ceEEeCC--C-------ceeEEEEeeeecCC----Cc--ceecccCccCCCCcEEEEEEEeEEEec
Q 012057 280 D----------DCISIGT--G-------CSDVDIADVTCGPS----HG--ISIGSLGAHYSQACVSNITVRNAIIRE 331 (472)
Q Consensus 280 D----------D~I~i~s--~-------s~nI~I~n~~~~~~----~g--i~iGs~~~~~~~~~i~nI~i~n~~i~~ 331 (472)
- ++-+|.. . ..++.|.||.|... .| |...+. .....=|+++.+.+..+
T Consensus 193 ~A~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNsA~~~GGAIY~~s~----t~p~~~n~~~d~~~~~~ 265 (1250)
T PRK09752 193 QAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSA----TAPYLIDISVDDSYSQN 265 (1250)
T ss_pred cccccccccCCCceEEEeccCCCccccccceEEEeccEEEccccCCcceEEEecCC----CCceEEEEEeccccccC
Confidence 2 2222221 0 23566777777652 22 444321 23344566666666554
No 126
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=37.92 E-value=2.7e+02 Score=29.38 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=76.7
Q ss_pred eeccccEEEEeEEEeCCCC----CCCCCceeee-cceeEEEEceEEecCCceEEeCCC----------ceeEEEEeeeec
Q 012057 236 FDGCEGVMIDKLSISSPKL----SPNTDGIHIE-NTKSVGIYNSMISNGDDCISIGTG----------CSDVDIADVTCG 300 (472)
Q Consensus 236 ~~~~~nv~I~~~~i~~~~~----~~n~DGI~i~-~s~nV~I~n~~i~~gDD~I~i~s~----------s~nI~I~n~~~~ 300 (472)
....+++..+|++|.+... ..+...+.+. ...++.++||.|...-|-+-.... ...-.++||++.
T Consensus 202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIe 281 (422)
T PRK10531 202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIE 281 (422)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEe
Confidence 4467899999999998642 1122334443 578999999999998887766321 225789999999
Q ss_pred CCCcceecccCccCCCCcEEEEEEEeEEEecCCc----eEEEEeecCCCceeeeEEEEeEEEEcc
Q 012057 301 PSHGISIGSLGAHYSQACVSNITVRNAIIRESDN----GLRIKTWQGGTGCVSDLSFENIQMENV 361 (472)
Q Consensus 301 ~~~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~~----gi~I~~~~g~~g~v~nI~f~Ni~~~~v 361 (472)
+.-.+-+|. -...|+||++.-... .-.|.........-..+.|.|+++...
T Consensus 282 G~VDFIFG~----------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 282 GDVDFVFGR----------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred ecccEEccC----------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 988887875 256688888865321 122322111112334678999999874
No 127
>PHA01732 proline-rich protein
Probab=35.68 E-value=46 Score=26.68 Aligned_cols=10 Identities=20% Similarity=0.292 Sum_probs=5.9
Q ss_pred hHHHHHHHHH
Q 012057 93 DTAAFRAAWK 102 (472)
Q Consensus 93 dT~Aiq~Ai~ 102 (472)
|..+|.++-.
T Consensus 43 ~apki~~~~s 52 (94)
T PHA01732 43 EAPKIREAQS 52 (94)
T ss_pred chhHHHHHHH
Confidence 5566666543
No 128
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=30.96 E-value=1.5e+02 Score=24.91 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=41.8
Q ss_pred EeeeeEEEeceEEecCC---CCeeeeeccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEc-eEEecCCceEE
Q 012057 214 FMSSNLVVSGLTIQNSP---QFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYN-SMISNGDDCIS 284 (472)
Q Consensus 214 ~~~~nv~I~~v~i~ns~---~~~i~~~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n-~~i~~gDD~I~ 284 (472)
....+..+.+-.+.+.. .+++.+..+.+..+.+.++. .. .. .+|+++..+....+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 55556666666666542 66777777666655555555 11 11 5788888777777777 55555555553
No 129
>PLN02682 pectinesterase family protein
Probab=28.98 E-value=6.7e+02 Score=25.98 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=89.0
Q ss_pred EEEEeeeeEEEeceEEecCCC---------Ceeee-eccccEEEEeEEEeCCCCCCCCCceeeecceeEEEEceEEecCC
Q 012057 211 IRFFMSSNLVVSGLTIQNSPQ---------FHMKF-DGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGD 280 (472)
Q Consensus 211 i~~~~~~nv~I~~v~i~ns~~---------~~i~~-~~~~nv~I~~~~i~~~~~~~n~DGI~i~~s~nV~I~n~~i~~gD 280 (472)
-.....+++..++|+|+|+.. ..+-+ ...+.+.+.+|+|.... |-+... ..+-.++||+|...=
T Consensus 157 T~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~V 230 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQ-----DTLYDH-LGRHYFKDCYIEGSV 230 (369)
T ss_pred EEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccc-----cceEEC-CCCEEEEeeEEcccc
Confidence 345567789999999998642 12222 34788999999999843 555443 347899999999866
Q ss_pred ceEEeCCCceeEEEEeeeecC-C--Cc-ceecccCccCCCCcEEEEEEEeEEEecCCceEEEE-eecCCCceeeeEEEEe
Q 012057 281 DCISIGTGCSDVDIADVTCGP-S--HG-ISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIK-TWQGGTGCVSDLSFEN 355 (472)
Q Consensus 281 D~I~i~s~s~nI~I~n~~~~~-~--~g-i~iGs~~~~~~~~~i~nI~i~n~~i~~~~~gi~I~-~~~g~~g~v~nI~f~N 355 (472)
|-| ++ .-...+++|++.. . .| |.--+. . ....-....|.||++.+. .-+.+. .|. .-..+.|.|
T Consensus 231 DFI-FG--~g~a~Fe~C~I~s~~~~~G~ITA~~r--~-~~~~~~GfvF~~C~itg~-g~~yLGRpW~----~yarvVf~~ 299 (369)
T PLN02682 231 DFI-FG--NGLSLYEGCHLHAIARNFGALTAQKR--Q-SVLEDTGFSFVNCKVTGS-GALYLGRAWG----TFSRVVFAY 299 (369)
T ss_pred cEE-ec--CceEEEEccEEEEecCCCeEEecCCC--C-CCCCCceEEEEeeEecCC-CceEeecCCC----CcceEEEEe
Confidence 644 33 3578999999875 1 23 222111 0 112235778999999875 334443 332 346789999
Q ss_pred EEEEccCeeE
Q 012057 356 IQMENVRNCI 365 (472)
Q Consensus 356 i~~~~v~~~i 365 (472)
..|.+.-.|-
T Consensus 300 t~m~~~I~p~ 309 (369)
T PLN02682 300 TYMDNIIIPR 309 (369)
T ss_pred ccCCCcCcCc
Confidence 9998764443
No 130
>PLN02671 pectinesterase
Probab=28.59 E-value=6.7e+02 Score=25.87 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=13.2
Q ss_pred EEEEeeeeEEEeceEEecC
Q 012057 211 IRFFMSSNLVVSGLTIQNS 229 (472)
Q Consensus 211 i~~~~~~nv~I~~v~i~ns 229 (472)
-.....+++..++|+|.|.
T Consensus 148 Tv~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 148 SVTIESDYFCATGITFENT 166 (359)
T ss_pred EEEEECCceEEEeeEEEcC
Confidence 3445567788888888776
No 131
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=28.57 E-value=72 Score=33.45 Aligned_cols=87 Identities=24% Similarity=0.335 Sum_probs=39.3
Q ss_pred ceeeecceeEEEEceEEecCCceEEeCCCceeEEEEeeee-cCC-CcceecccCccCCCCcEEEEEEEeEEEecCC-ceE
Q 012057 260 GIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTC-GPS-HGISIGSLGAHYSQACVSNITVRNAIIRESD-NGL 336 (472)
Q Consensus 260 GI~i~~s~nV~I~n~~i~~gDD~I~i~s~s~nI~I~n~~~-~~~-~gi~iGs~~~~~~~~~i~nI~i~n~~i~~~~-~gi 336 (472)
|+.+.-..|=.|..+.|.+++.++-+..+.-. -++++.+ .+. .|+-|++. ++=+++.+.+.+.+ .||
T Consensus 420 gvqirtGsNP~i~~NkIWggqNGvLVyn~G~G-c~E~NeIFDNaMagVwIKTd---------s~PtlrRNKI~dgRdgGi 489 (625)
T KOG1777|consen 420 GVQIRTGSNPKIRRNKIWGGQNGVLVYNGGLG-CLEDNEIFDNAMAGVWIKTD---------SNPTLRRNKIYDGRDGGI 489 (625)
T ss_pred ceEeecCCCCeeeecceecCcccEEEEcCccc-ccccccchhhhhcceEEecC---------CCcceeecceecCCCCcE
Confidence 45555444556666666666655544332111 1222222 222 34555432 23445555555553 255
Q ss_pred EEEeecCCCcee-eeEEEEeEEE
Q 012057 337 RIKTWQGGTGCV-SDLSFENIQM 358 (472)
Q Consensus 337 ~I~~~~g~~g~v-~nI~f~Ni~~ 358 (472)
.|- .++.|.+ .|=.|+|-.+
T Consensus 490 cif--ngGkGlle~neif~Nali 510 (625)
T KOG1777|consen 490 CIF--NGGKGLLEHNEIFRNALI 510 (625)
T ss_pred EEe--cCCceeeechhhhhcccc
Confidence 553 3455543 3344555544
No 132
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=22.47 E-value=2e+02 Score=24.05 Aligned_cols=6 Identities=0% Similarity=0.335 Sum_probs=2.1
Q ss_pred HHHHHh
Q 012057 11 LLAVIL 16 (472)
Q Consensus 11 ~~~~~~ 16 (472)
|+++.+
T Consensus 62 w~~~A~ 67 (103)
T PF11027_consen 62 WMVLAM 67 (103)
T ss_pred HHHHHH
Confidence 333333
No 133
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=21.88 E-value=3.4e+02 Score=22.41 Aligned_cols=7 Identities=29% Similarity=0.254 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 012057 7 LLLILLA 13 (472)
Q Consensus 7 ~~~~~~~ 13 (472)
++.+.++
T Consensus 25 l~~i~~~ 31 (97)
T PF04834_consen 25 LYAIGIV 31 (97)
T ss_pred HHHHHHH
Confidence 4444333
No 134
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=21.07 E-value=1.2e+02 Score=29.86 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=28.6
Q ss_pred CceEEeeeecccCCCCcchHHHHHHHHHHHhhcCCcEEEecCCc
Q 012057 75 DCIFDVRDYGAVGDGSADDTAAFRAAWKAACAVEAGVVLAPSDY 118 (472)
Q Consensus 75 ~~~~~V~dfGA~gDG~tDdT~Aiq~Ai~~a~~~~g~~V~iP~G~ 118 (472)
...+=|.+=||-.| ++|.+.+.++|+.+|+.||+|+|-
T Consensus 86 g~dlvv~SvGALaD------~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 86 GLDMIICSAGALAD------DALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred CCCEEEEChhHhcC------HHHHHHHHHHHHhCCCEEEEeChH
Confidence 34466777788776 567777777777789999999993
Done!