Query 012059
Match_columns 472
No_of_seqs 288 out of 2944
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.6E-77 3.4E-82 569.3 37.8 428 25-458 16-478 (519)
2 PLN00206 DEAD-box ATP-dependen 100.0 1.1E-75 2.3E-80 586.5 50.0 438 16-456 66-503 (518)
3 PTZ00110 helicase; Provisional 100.0 7.2E-73 1.6E-77 567.3 51.2 434 17-458 77-514 (545)
4 KOG0336 ATP-dependent RNA heli 100.0 1.7E-74 3.7E-79 516.9 32.0 430 21-458 163-602 (629)
5 KOG0333 U5 snRNP-like RNA heli 100.0 3.9E-73 8.4E-78 523.1 34.2 420 35-457 206-654 (673)
6 KOG0339 ATP-dependent RNA heli 100.0 3.7E-72 8.1E-77 514.2 37.8 437 14-458 165-605 (731)
7 KOG0330 ATP-dependent RNA heli 100.0 1.1E-70 2.4E-75 490.0 32.2 370 70-449 57-430 (476)
8 KOG0341 DEAD-box protein abstr 100.0 4.7E-70 1E-74 485.2 22.1 407 45-455 141-556 (610)
9 KOG0335 ATP-dependent RNA heli 100.0 3.5E-68 7.7E-73 496.5 32.6 395 60-455 60-471 (482)
10 KOG0334 RNA helicase [RNA proc 100.0 2.3E-67 4.9E-72 524.2 33.7 444 17-469 312-774 (997)
11 COG0513 SrmB Superfamily II DN 100.0 1.2E-65 2.6E-70 510.1 41.8 371 74-452 29-408 (513)
12 KOG0328 Predicted ATP-dependen 100.0 1.1E-65 2.3E-70 439.3 30.7 374 70-453 23-398 (400)
13 PRK04837 ATP-dependent RNA hel 100.0 2.8E-64 6.1E-69 495.6 43.2 369 73-444 7-378 (423)
14 PRK10590 ATP-dependent RNA hel 100.0 6E-63 1.3E-67 489.1 43.8 366 75-444 2-368 (456)
15 PRK04537 ATP-dependent RNA hel 100.0 3.9E-62 8.5E-67 491.2 43.0 368 73-443 8-379 (572)
16 KOG0338 ATP-dependent RNA heli 100.0 1.2E-63 2.6E-68 458.7 28.5 361 73-440 180-545 (691)
17 PRK11776 ATP-dependent RNA hel 100.0 2.9E-61 6.2E-66 479.4 42.3 358 74-442 4-363 (460)
18 PRK11634 ATP-dependent RNA hel 100.0 4E-61 8.8E-66 486.2 42.4 361 73-443 5-367 (629)
19 KOG0342 ATP-dependent RNA heli 100.0 1.3E-61 2.8E-66 444.8 32.1 360 73-437 81-446 (543)
20 PRK11192 ATP-dependent RNA hel 100.0 3.8E-60 8.2E-65 468.7 44.4 363 75-443 2-367 (434)
21 KOG0345 ATP-dependent RNA heli 100.0 1E-60 2.2E-65 435.9 36.3 363 74-444 4-376 (567)
22 KOG0340 ATP-dependent RNA heli 100.0 2.6E-61 5.7E-66 425.1 30.9 366 73-446 6-379 (442)
23 PRK01297 ATP-dependent RNA hel 100.0 1.9E-59 4.1E-64 467.4 46.6 379 72-453 85-469 (475)
24 KOG0326 ATP-dependent RNA heli 100.0 1.2E-62 2.7E-67 427.4 19.7 372 74-456 85-457 (459)
25 KOG0348 ATP-dependent RNA heli 100.0 9.8E-60 2.1E-64 435.3 31.8 365 73-438 135-564 (708)
26 KOG0343 RNA Helicase [RNA proc 100.0 6.3E-59 1.4E-63 431.3 32.7 355 72-432 67-426 (758)
27 PTZ00424 helicase 45; Provisio 100.0 9.2E-58 2E-62 448.8 41.8 368 73-450 27-396 (401)
28 KOG0346 RNA helicase [RNA proc 100.0 1.3E-58 2.9E-63 418.5 28.4 367 74-443 19-425 (569)
29 KOG0344 ATP-dependent RNA heli 100.0 1.1E-56 2.4E-61 421.9 27.9 398 55-456 113-523 (593)
30 KOG0347 RNA helicase [RNA proc 100.0 2.6E-57 5.7E-62 420.5 19.8 372 69-444 176-586 (731)
31 TIGR03817 DECH_helic helicase/ 100.0 8.5E-53 1.8E-57 433.9 37.7 356 69-442 7-402 (742)
32 KOG0327 Translation initiation 100.0 7.2E-54 1.6E-58 383.6 25.6 368 74-453 26-395 (397)
33 KOG0337 ATP-dependent RNA heli 100.0 3E-54 6.6E-59 388.3 21.4 363 73-443 20-383 (529)
34 KOG0332 ATP-dependent RNA heli 100.0 1.9E-52 4.1E-57 371.3 29.3 371 71-454 87-471 (477)
35 PLN03137 ATP-dependent DNA hel 100.0 8.7E-51 1.9E-55 415.9 39.5 340 75-438 436-797 (1195)
36 KOG0350 DEAD-box ATP-dependent 100.0 6.8E-52 1.5E-56 380.7 28.1 362 73-442 126-554 (620)
37 KOG4284 DEAD box protein [Tran 100.0 1E-50 2.3E-55 382.7 26.0 355 65-430 16-381 (980)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.9E-49 4E-54 393.9 35.1 325 91-438 6-343 (470)
39 PRK02362 ski2-like helicase; P 100.0 3.5E-49 7.5E-54 411.8 32.9 339 75-429 2-398 (737)
40 PRK11057 ATP-dependent DNA hel 100.0 6.9E-48 1.5E-52 392.3 36.9 332 81-437 9-352 (607)
41 PRK00254 ski2-like helicase; P 100.0 1.3E-47 2.9E-52 398.9 33.7 341 75-429 2-389 (720)
42 TIGR01389 recQ ATP-dependent D 100.0 3.1E-47 6.8E-52 388.9 35.4 322 91-437 8-340 (591)
43 PRK13767 ATP-dependent helicas 100.0 1.3E-46 2.7E-51 395.8 37.5 342 81-426 18-396 (876)
44 PRK01172 ski2-like helicase; P 100.0 9.2E-46 2E-50 383.7 32.5 333 75-429 2-379 (674)
45 TIGR00580 mfd transcription-re 100.0 2.2E-44 4.7E-49 374.6 39.9 392 40-458 388-805 (926)
46 PRK10917 ATP-dependent DNA hel 100.0 1.5E-43 3.3E-48 364.1 40.2 350 83-457 248-618 (681)
47 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.2E-44 6.9E-49 362.9 33.1 318 87-426 6-389 (844)
48 COG1201 Lhr Lhr-like helicases 100.0 2.2E-44 4.7E-49 362.0 30.9 337 81-427 8-361 (814)
49 PRK10689 transcription-repair 100.0 3E-43 6.4E-48 373.8 40.8 391 41-458 538-954 (1147)
50 TIGR00643 recG ATP-dependent D 100.0 3.6E-43 7.9E-48 359.2 39.4 349 84-457 224-595 (630)
51 COG0514 RecQ Superfamily II DN 100.0 6.5E-44 1.4E-48 346.2 29.2 330 87-439 7-348 (590)
52 KOG0329 ATP-dependent RNA heli 100.0 1.6E-45 3.6E-50 311.0 15.0 342 65-451 33-379 (387)
53 PRK09751 putative ATP-dependen 100.0 1.4E-41 3.1E-46 362.5 32.1 306 116-424 1-381 (1490)
54 COG1204 Superfamily II helicas 100.0 2.1E-41 4.6E-46 345.3 27.8 336 79-428 14-408 (766)
55 COG1111 MPH1 ERCC4-like helica 100.0 8E-40 1.7E-44 303.7 34.1 323 94-429 13-482 (542)
56 PHA02653 RNA helicase NPH-II; 100.0 4.1E-40 8.9E-45 331.6 33.0 312 99-430 167-516 (675)
57 COG1202 Superfamily II helicas 100.0 1.1E-40 2.4E-45 311.6 24.6 337 74-428 194-553 (830)
58 PRK09401 reverse gyrase; Revie 100.0 1.6E-39 3.6E-44 346.1 35.7 302 87-415 71-431 (1176)
59 PRK12898 secA preprotein trans 100.0 3E-39 6.5E-44 320.1 33.2 319 92-430 100-588 (656)
60 PHA02558 uvsW UvsW helicase; P 100.0 1.3E-39 2.8E-44 325.1 30.3 306 94-424 112-449 (501)
61 PRK14701 reverse gyrase; Provi 100.0 3.4E-39 7.4E-44 350.4 32.1 329 83-436 66-464 (1638)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.7E-38 3.7E-43 327.4 32.2 303 101-430 7-338 (819)
63 TIGR01587 cas3_core CRISPR-ass 100.0 2.5E-38 5.4E-43 305.9 29.3 301 113-430 1-338 (358)
64 PRK11664 ATP-dependent RNA hel 100.0 2.3E-38 4.9E-43 327.4 29.3 302 102-430 11-341 (812)
65 PRK09200 preprotein translocas 100.0 1.2E-37 2.5E-42 315.3 31.7 321 91-430 74-543 (790)
66 TIGR03714 secA2 accessory Sec 100.0 4E-37 8.8E-42 308.4 33.9 318 97-430 69-539 (762)
67 COG1205 Distinct helicase fami 100.0 3.3E-37 7.2E-42 319.1 31.4 334 81-426 55-420 (851)
68 KOG0952 DNA/RNA helicase MER3/ 100.0 7.9E-38 1.7E-42 310.7 25.2 343 91-438 105-501 (1230)
69 TIGR00963 secA preprotein tran 100.0 1.1E-36 2.3E-41 303.4 32.7 319 92-430 53-519 (745)
70 PRK13766 Hef nuclease; Provisi 100.0 3.8E-36 8.2E-41 317.9 38.8 322 95-429 14-480 (773)
71 KOG0354 DEAD-box like helicase 100.0 7E-37 1.5E-41 300.6 28.9 323 94-429 60-530 (746)
72 KOG0351 ATP-dependent DNA heli 100.0 6.9E-37 1.5E-41 314.2 28.7 329 89-439 257-603 (941)
73 TIGR01054 rgy reverse gyrase. 100.0 5.2E-36 1.1E-40 319.9 33.6 292 83-400 65-409 (1171)
74 KOG0352 ATP-dependent DNA heli 100.0 1E-36 2.2E-41 275.6 20.3 331 85-438 7-372 (641)
75 KOG0349 Putative DEAD-box RNA 100.0 2.7E-36 5.9E-41 273.3 22.0 301 150-450 287-669 (725)
76 TIGR00603 rad25 DNA repair hel 100.0 1.6E-35 3.4E-40 297.0 29.1 320 96-444 255-625 (732)
77 TIGR03158 cas3_cyano CRISPR-as 100.0 1.2E-34 2.7E-39 276.8 31.2 291 100-413 1-357 (357)
78 KOG0353 ATP-dependent DNA heli 100.0 3.2E-35 7E-40 262.3 24.1 340 78-437 75-476 (695)
79 COG1200 RecG RecG-like helicas 100.0 2.8E-33 6.1E-38 271.3 33.7 353 81-458 247-621 (677)
80 PRK05580 primosome assembly pr 100.0 3.7E-32 8.1E-37 278.7 36.0 314 96-433 144-554 (679)
81 PRK04914 ATP-dependent helicas 100.0 1.7E-32 3.7E-37 284.6 32.4 332 96-442 152-617 (956)
82 PRK11131 ATP-dependent RNA hel 100.0 8.3E-33 1.8E-37 290.7 30.3 301 100-430 78-413 (1294)
83 COG1061 SSL2 DNA or RNA helica 100.0 5.3E-32 1.1E-36 264.9 25.3 291 96-415 36-376 (442)
84 KOG0951 RNA helicase BRR2, DEA 100.0 2.4E-32 5.2E-37 275.1 22.9 337 93-435 306-709 (1674)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.6E-31 3.6E-36 282.0 28.0 313 93-430 61-406 (1283)
86 TIGR00595 priA primosomal prot 100.0 1.3E-30 2.7E-35 258.2 29.7 292 115-430 1-383 (505)
87 PRK12899 secA preprotein trans 100.0 7.2E-31 1.6E-35 264.7 27.3 179 44-236 33-228 (970)
88 cd00268 DEADc DEAD-box helicas 100.0 7.4E-31 1.6E-35 233.1 24.4 201 76-281 1-202 (203)
89 PRK13104 secA preprotein trans 100.0 3.7E-30 8E-35 260.2 32.2 332 92-443 79-606 (896)
90 COG1197 Mfd Transcription-repa 100.0 9.8E-30 2.1E-34 260.1 35.1 397 35-458 526-948 (1139)
91 PRK09694 helicase Cas3; Provis 100.0 9.9E-30 2.1E-34 262.6 34.5 311 95-417 285-664 (878)
92 PRK12904 preprotein translocas 100.0 8.3E-30 1.8E-34 257.5 29.8 319 92-430 78-575 (830)
93 KOG0947 Cytoplasmic exosomal R 100.0 3.4E-30 7.4E-35 253.8 24.6 314 91-428 293-723 (1248)
94 KOG0950 DNA polymerase theta/e 100.0 4.3E-31 9.4E-36 261.8 17.4 343 81-438 208-621 (1008)
95 PRK12906 secA preprotein trans 100.0 1E-29 2.3E-34 255.8 26.3 319 92-430 77-555 (796)
96 PLN03142 Probable chromatin-re 100.0 9.5E-29 2.1E-33 257.6 28.3 318 96-428 169-599 (1033)
97 COG4581 Superfamily II RNA hel 100.0 7.5E-29 1.6E-33 253.6 26.5 315 89-428 113-537 (1041)
98 KOG0948 Nuclear exosomal RNA h 100.0 8.5E-30 1.8E-34 245.2 17.7 333 96-453 129-583 (1041)
99 COG4098 comFA Superfamily II D 100.0 2.2E-27 4.9E-32 209.9 31.1 312 96-438 97-426 (441)
100 PRK11448 hsdR type I restricti 100.0 4.2E-28 9E-33 257.7 29.7 309 96-417 413-802 (1123)
101 PRK13107 preprotein translocas 100.0 4.6E-27 1E-31 237.1 28.1 319 92-430 79-593 (908)
102 KOG0385 Chromatin remodeling c 100.0 5.5E-27 1.2E-31 226.8 24.9 318 96-428 167-599 (971)
103 PF00270 DEAD: DEAD/DEAH box h 100.0 8.5E-27 1.8E-31 200.9 20.0 164 98-269 1-168 (169)
104 KOG0922 DEAH-box RNA helicase 99.9 9E-25 2E-29 210.3 25.9 308 100-430 55-392 (674)
105 COG1643 HrpA HrpA-like helicas 99.9 2.3E-24 5E-29 219.6 27.1 307 100-429 54-388 (845)
106 KOG0384 Chromodomain-helicase 99.9 1.3E-25 2.8E-30 227.4 14.8 384 24-429 300-812 (1373)
107 PRK12900 secA preprotein trans 99.9 2.8E-24 6.1E-29 217.9 21.4 144 299-445 577-732 (1025)
108 COG1203 CRISPR-associated heli 99.9 1.1E-23 2.3E-28 218.6 24.8 323 96-430 195-552 (733)
109 COG1110 Reverse gyrase [DNA re 99.9 6E-23 1.3E-27 205.4 28.8 286 86-400 72-417 (1187)
110 KOG0923 mRNA splicing factor A 99.9 2.3E-23 4.9E-28 198.9 21.5 309 98-428 267-606 (902)
111 KOG0387 Transcription-coupled 99.9 3.3E-23 7.1E-28 201.9 22.4 319 96-428 205-658 (923)
112 TIGR00631 uvrb excinuclease AB 99.9 6.5E-22 1.4E-26 200.8 31.9 135 303-439 425-564 (655)
113 TIGR01407 dinG_rel DnaQ family 99.9 5.2E-22 1.1E-26 210.3 32.5 346 81-441 231-829 (850)
114 KOG0949 Predicted helicase, DE 99.9 1.8E-23 3.9E-28 207.1 17.0 159 96-265 511-673 (1330)
115 COG1198 PriA Primosomal protei 99.9 5.7E-22 1.2E-26 199.3 28.0 318 96-435 198-610 (730)
116 COG4096 HsdR Type I site-speci 99.9 1.5E-22 3.2E-27 199.6 23.2 296 96-415 165-525 (875)
117 TIGR00348 hsdR type I site-spe 99.9 2.1E-21 4.6E-26 199.5 31.9 300 96-415 238-634 (667)
118 PRK12326 preprotein translocas 99.9 9.6E-22 2.1E-26 194.3 27.3 318 92-430 75-549 (764)
119 COG0556 UvrB Helicase subunit 99.9 8.6E-22 1.9E-26 184.5 23.9 170 253-431 386-560 (663)
120 KOG0389 SNF2 family DNA-depend 99.9 6.6E-22 1.4E-26 192.6 21.4 320 96-429 399-889 (941)
121 KOG0924 mRNA splicing factor A 99.9 1.9E-21 4E-26 186.3 22.9 308 98-428 358-697 (1042)
122 KOG0926 DEAH-box RNA helicase 99.9 1.9E-21 4.2E-26 189.2 22.8 306 103-428 263-704 (1172)
123 PRK05298 excinuclease ABC subu 99.9 2.6E-20 5.6E-25 190.7 32.5 149 304-454 430-592 (652)
124 KOG0920 ATP-dependent RNA heli 99.9 2.6E-21 5.6E-26 196.6 24.4 314 98-429 175-545 (924)
125 KOG0390 DNA repair protein, SN 99.9 8.3E-21 1.8E-25 189.8 27.3 321 96-425 238-702 (776)
126 COG4889 Predicted helicase [Ge 99.9 1.5E-22 3.2E-27 198.5 14.4 426 5-445 50-618 (1518)
127 PRK13103 secA preprotein trans 99.9 9.7E-21 2.1E-25 191.8 27.0 331 92-444 79-611 (913)
128 PRK12903 secA preprotein trans 99.9 1.6E-20 3.5E-25 188.2 24.5 332 92-444 75-560 (925)
129 smart00487 DEXDc DEAD-like hel 99.9 1.6E-20 3.6E-25 166.1 22.1 186 92-285 4-192 (201)
130 PRK07246 bifunctional ATP-depe 99.9 2E-19 4.4E-24 188.0 31.2 330 92-442 242-799 (820)
131 KOG0392 SNF2 family DNA-depend 99.9 4.7E-20 1E-24 186.9 21.3 325 96-428 975-1454(1549)
132 KOG1123 RNA polymerase II tran 99.8 5.5E-20 1.2E-24 170.7 16.3 310 94-431 300-656 (776)
133 CHL00122 secA preprotein trans 99.8 1.1E-18 2.5E-23 176.1 25.2 277 92-388 73-491 (870)
134 KOG0925 mRNA splicing factor A 99.8 2.7E-18 5.8E-23 159.1 24.2 329 73-428 24-387 (699)
135 KOG4150 Predicted ATP-dependen 99.8 5.9E-19 1.3E-23 166.2 18.7 326 89-426 279-638 (1034)
136 KOG1000 Chromatin remodeling p 99.8 2.4E-19 5.3E-24 166.2 15.7 327 95-443 197-620 (689)
137 KOG0391 SNF2 family DNA-depend 99.8 2.1E-18 4.5E-23 173.7 23.0 125 304-429 1260-1388(1958)
138 KOG0386 Chromatin remodeling c 99.8 1.5E-19 3.2E-24 180.5 13.8 320 95-429 393-837 (1157)
139 PRK08074 bifunctional ATP-depe 99.8 3.5E-17 7.5E-22 174.5 31.1 135 307-441 738-908 (928)
140 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.7E-16 3.7E-21 158.9 33.8 118 319-439 469-628 (636)
141 cd00079 HELICc Helicase superf 99.8 1.6E-18 3.5E-23 142.4 14.8 120 304-424 12-131 (131)
142 PRK12902 secA preprotein trans 99.8 6.9E-17 1.5E-21 163.1 28.3 277 92-388 82-506 (939)
143 KOG0388 SNF2 family DNA-depend 99.8 5.3E-18 1.1E-22 163.4 18.6 127 301-428 1025-1154(1185)
144 KOG0951 RNA helicase BRR2, DEA 99.8 3.7E-17 7.9E-22 166.6 20.0 313 96-437 1143-1503(1674)
145 PF00271 Helicase_C: Helicase 99.8 2.5E-18 5.3E-23 127.1 8.6 77 339-416 2-78 (78)
146 cd00046 DEXDc DEAD-like helica 99.7 7.3E-17 1.6E-21 134.3 16.5 143 112-263 1-144 (144)
147 KOG4439 RNA polymerase II tran 99.7 1.9E-16 4.2E-21 152.9 18.3 118 305-423 730-851 (901)
148 KOG1002 Nucleotide excision re 99.7 1.4E-15 3.1E-20 141.4 22.2 137 305-444 621-763 (791)
149 PRK11747 dinG ATP-dependent DN 99.7 2.9E-14 6.3E-19 147.6 34.3 130 307-440 521-688 (697)
150 PRK12901 secA preprotein trans 99.7 3.1E-16 6.7E-21 160.0 18.9 128 299-430 607-743 (1112)
151 PF04851 ResIII: Type III rest 99.7 5E-17 1.1E-21 141.9 10.5 152 96-264 3-183 (184)
152 TIGR00604 rad3 DNA repair heli 99.7 1.9E-14 4.2E-19 150.1 30.7 75 92-173 6-84 (705)
153 KOG0953 Mitochondrial RNA heli 99.7 7.7E-16 1.7E-20 145.3 17.6 268 114-428 194-477 (700)
154 COG1199 DinG Rad3-related DNA 99.7 1E-14 2.2E-19 152.2 27.1 121 319-442 478-633 (654)
155 smart00490 HELICc helicase sup 99.6 2E-15 4.4E-20 112.7 9.1 81 335-416 2-82 (82)
156 PRK14873 primosome assembly pr 99.6 1.1E-13 2.4E-18 140.7 22.5 283 115-428 164-539 (665)
157 KOG1015 Transcription regulato 99.6 4.2E-14 9.1E-19 140.7 17.4 123 304-426 1126-1273(1567)
158 TIGR02562 cas3_yersinia CRISPR 99.6 4.4E-13 9.5E-18 138.0 23.3 310 96-417 408-881 (1110)
159 COG0553 HepA Superfamily II DN 99.6 2.3E-13 5E-18 147.7 21.7 322 94-426 336-818 (866)
160 PF06862 DUF1253: Protein of u 99.5 1.9E-11 4.1E-16 116.9 29.8 289 147-438 35-425 (442)
161 PF02399 Herpes_ori_bp: Origin 99.5 7.5E-12 1.6E-16 125.8 23.4 289 113-428 51-388 (824)
162 COG0653 SecA Preprotein transl 99.5 1.2E-12 2.7E-17 132.2 16.6 355 98-470 80-596 (822)
163 COG0610 Type I site-specific r 99.4 2.9E-11 6.2E-16 128.7 24.9 314 112-444 274-667 (962)
164 PF00176 SNF2_N: SNF2 family N 99.4 2.3E-12 5.1E-17 121.6 13.1 156 100-263 1-172 (299)
165 PF07652 Flavi_DEAD: Flaviviru 99.4 7.3E-12 1.6E-16 99.7 12.0 136 110-267 3-140 (148)
166 KOG2340 Uncharacterized conser 99.3 2.1E-10 4.6E-15 108.4 20.1 342 95-438 215-678 (698)
167 smart00489 DEXDc3 DEAD-like he 99.3 4E-11 8.7E-16 111.1 14.3 75 93-172 6-84 (289)
168 smart00488 DEXDc2 DEAD-like he 99.3 4E-11 8.7E-16 111.1 14.3 75 93-172 6-84 (289)
169 KOG1016 Predicted DNA helicase 99.2 7.5E-10 1.6E-14 108.9 16.9 111 319-429 718-848 (1387)
170 KOG0921 Dosage compensation co 99.1 3.5E-09 7.7E-14 106.0 15.9 310 102-428 384-774 (1282)
171 PF07517 SecA_DEAD: SecA DEAD- 99.0 4.1E-09 8.9E-14 95.0 12.8 131 91-236 73-210 (266)
172 KOG0952 DNA/RNA helicase MER3/ 98.9 1.3E-10 2.8E-15 118.1 -1.4 260 96-373 927-1207(1230)
173 PRK15483 type III restriction- 98.8 5E-08 1.1E-12 101.6 14.1 143 112-265 60-240 (986)
174 COG3587 Restriction endonuclea 98.8 2.7E-07 5.8E-12 92.8 16.2 74 370-443 482-568 (985)
175 KOG1001 Helicase-like transcri 98.7 5.5E-08 1.2E-12 99.0 10.4 102 321-423 540-643 (674)
176 KOG1133 Helicase of the DEAD s 98.7 6.2E-05 1.4E-09 74.6 29.8 105 320-428 629-780 (821)
177 TIGR00596 rad1 DNA repair prot 98.7 7.7E-07 1.7E-11 92.8 18.0 66 198-263 6-72 (814)
178 PF13872 AAA_34: P-loop contai 98.6 1.9E-06 4.1E-11 78.1 14.3 172 78-269 25-226 (303)
179 PF13086 AAA_11: AAA domain; P 98.5 7E-07 1.5E-11 80.9 10.8 73 97-171 2-75 (236)
180 PF13307 Helicase_C_2: Helicas 98.5 5.1E-07 1.1E-11 76.8 8.2 105 320-428 9-150 (167)
181 KOG1802 RNA helicase nonsense 98.4 6.3E-06 1.4E-10 80.9 14.7 84 88-184 402-485 (935)
182 PF12340 DUF3638: Protein of u 98.4 4.6E-06 1E-10 72.9 12.6 152 74-237 3-186 (229)
183 PF13604 AAA_30: AAA domain; P 98.3 1.4E-06 3E-11 76.2 7.5 120 96-260 1-128 (196)
184 PF02562 PhoH: PhoH-like prote 98.3 1.6E-06 3.5E-11 75.1 7.2 141 96-259 4-152 (205)
185 PF09848 DUF2075: Uncharacteri 98.2 5.8E-06 1.3E-10 79.6 9.5 108 113-250 3-117 (352)
186 KOG1803 DNA helicase [Replicat 98.2 6.9E-06 1.5E-10 80.1 8.6 64 96-169 185-249 (649)
187 KOG1132 Helicase of the DEAD s 98.1 2.7E-05 5.9E-10 79.1 11.8 139 96-237 21-261 (945)
188 PRK10536 hypothetical protein; 98.1 5.1E-05 1.1E-09 67.8 12.2 142 93-261 56-210 (262)
189 TIGR00376 DNA helicase, putati 98.1 3.2E-05 7E-10 79.7 12.3 67 95-171 156-223 (637)
190 PF13245 AAA_19: Part of AAA d 98.1 2.1E-05 4.6E-10 56.7 7.2 60 104-169 2-62 (76)
191 COG3421 Uncharacterized protei 98.0 3.6E-05 7.8E-10 75.0 10.4 138 116-265 2-167 (812)
192 PRK10875 recD exonuclease V su 98.0 5.8E-05 1.3E-09 77.0 12.6 139 98-260 154-299 (615)
193 KOG0383 Predicted helicase [Ge 98.0 3.2E-07 6.9E-12 92.4 -3.9 79 304-384 615-696 (696)
194 TIGR01447 recD exodeoxyribonuc 98.0 8.5E-05 1.8E-09 75.6 13.2 140 98-260 147-293 (586)
195 TIGR01448 recD_rel helicase, p 97.8 0.00023 5E-09 74.7 13.6 66 92-166 320-385 (720)
196 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00047 1E-08 72.7 15.0 120 96-260 352-474 (744)
197 smart00492 HELICc3 helicase su 97.8 0.00023 5E-09 58.3 9.8 77 351-427 27-137 (141)
198 PRK13889 conjugal transfer rel 97.7 0.00064 1.4E-08 72.9 14.5 125 92-262 343-470 (988)
199 KOG1131 RNA polymerase II tran 97.7 0.00072 1.6E-08 65.1 12.8 75 92-172 12-90 (755)
200 smart00491 HELICc2 helicase su 97.7 0.0003 6.4E-09 57.8 9.0 70 358-427 31-138 (142)
201 KOG0298 DEAD box-containing he 97.7 0.00017 3.7E-09 76.2 9.1 154 110-267 373-554 (1394)
202 COG2805 PilT Tfp pilus assembl 97.6 0.00012 2.6E-09 65.9 5.2 51 68-138 100-151 (353)
203 PF00580 UvrD-helicase: UvrD/R 97.5 0.00026 5.7E-09 67.2 7.8 123 97-233 1-125 (315)
204 PF13871 Helicase_C_4: Helicas 97.5 0.0005 1.1E-08 62.4 8.9 85 362-446 52-148 (278)
205 PRK13826 Dtr system oriT relax 97.4 0.0028 6.2E-08 68.5 14.1 136 81-262 367-505 (1102)
206 PRK04296 thymidine kinase; Pro 97.4 0.0004 8.6E-09 60.5 6.5 35 113-157 4-38 (190)
207 PRK12723 flagellar biosynthesi 97.4 0.0032 6.9E-08 60.7 13.1 129 112-274 175-309 (388)
208 KOG1805 DNA replication helica 97.4 0.001 2.2E-08 68.8 10.1 144 77-238 654-811 (1100)
209 TIGR02760 TraI_TIGR conjugativ 97.4 0.035 7.6E-07 64.8 23.0 237 96-371 429-686 (1960)
210 PF13401 AAA_22: AAA domain; P 97.3 0.0011 2.4E-08 53.7 7.9 19 110-128 3-21 (131)
211 COG1875 NYN ribonuclease and A 97.3 0.0026 5.7E-08 59.0 10.7 143 91-260 223-385 (436)
212 cd00009 AAA The AAA+ (ATPases 97.2 0.0042 9.1E-08 51.2 10.8 17 111-127 19-35 (151)
213 KOG0701 dsRNA-specific nucleas 97.2 0.00052 1.1E-08 75.6 5.7 95 322-416 294-399 (1606)
214 PRK06526 transposase; Provisio 97.2 0.0019 4.1E-08 58.7 8.5 23 107-129 94-116 (254)
215 PHA02533 17 large terminase pr 97.2 0.0022 4.7E-08 64.7 9.7 123 96-236 59-182 (534)
216 PRK08181 transposase; Validate 97.2 0.0069 1.5E-07 55.5 12.1 30 98-127 89-122 (269)
217 PRK14722 flhF flagellar biosyn 97.1 0.0039 8.4E-08 59.6 10.7 131 110-274 136-269 (374)
218 PF03354 Terminase_1: Phage Te 97.1 0.0017 3.7E-08 65.2 8.4 149 99-260 1-160 (477)
219 smart00382 AAA ATPases associa 97.1 0.0017 3.7E-08 53.1 6.7 18 111-128 2-19 (148)
220 PF14617 CMS1: U3-containing 9 97.0 0.0028 6.1E-08 56.9 7.7 87 147-234 124-212 (252)
221 PRK14974 cell division protein 97.0 0.0068 1.5E-07 57.3 10.3 52 223-274 222-275 (336)
222 PRK06921 hypothetical protein; 96.9 0.01 2.2E-07 54.5 11.2 44 110-163 116-159 (266)
223 PRK07952 DNA replication prote 96.9 0.023 4.9E-07 51.3 12.6 48 221-268 160-210 (244)
224 PF05970 PIF1: PIF1-like helic 96.9 0.0042 9.1E-08 60.1 8.4 59 97-165 2-66 (364)
225 PRK11889 flhF flagellar biosyn 96.8 0.022 4.7E-07 54.5 12.5 128 112-275 242-375 (436)
226 PRK11054 helD DNA helicase IV; 96.8 0.011 2.4E-07 61.6 11.6 71 95-173 195-265 (684)
227 PF00448 SRP54: SRP54-type pro 96.8 0.0034 7.3E-08 54.8 6.2 48 222-269 82-131 (196)
228 PRK08116 hypothetical protein; 96.7 0.015 3.2E-07 53.6 10.2 46 222-268 177-226 (268)
229 PF13173 AAA_14: AAA domain 96.7 0.031 6.6E-07 45.1 10.9 40 223-264 61-100 (128)
230 COG2256 MGS1 ATPase related to 96.7 0.0058 1.3E-07 57.6 7.3 36 225-264 106-141 (436)
231 PRK12377 putative replication 96.7 0.026 5.6E-07 51.1 11.3 44 111-165 101-144 (248)
232 cd01122 GP4d_helicase GP4d_hel 96.7 0.011 2.3E-07 54.9 9.1 41 108-157 27-67 (271)
233 TIGR01075 uvrD DNA helicase II 96.6 0.01 2.2E-07 63.0 9.8 72 95-174 3-74 (715)
234 PRK08727 hypothetical protein; 96.6 0.018 3.9E-07 51.9 9.9 45 223-267 93-140 (233)
235 PRK00149 dnaA chromosomal repl 96.6 0.022 4.8E-07 56.9 11.4 47 223-269 211-260 (450)
236 PRK14712 conjugal transfer nic 96.6 0.02 4.4E-07 64.3 11.8 64 96-165 835-900 (1623)
237 KOG0989 Replication factor C, 96.5 0.012 2.5E-07 53.5 8.1 46 218-264 124-170 (346)
238 PRK05703 flhF flagellar biosyn 96.5 0.058 1.3E-06 53.1 13.6 128 111-274 221-354 (424)
239 PRK06835 DNA replication prote 96.5 0.034 7.3E-07 52.7 11.3 47 221-267 244-293 (329)
240 COG3973 Superfamily I DNA and 96.5 0.017 3.7E-07 57.2 9.4 92 79-174 187-285 (747)
241 PRK06893 DNA replication initi 96.5 0.0066 1.4E-07 54.6 6.3 43 222-264 90-135 (229)
242 PRK11773 uvrD DNA-dependent he 96.5 0.014 3.1E-07 61.9 9.7 71 96-174 9-79 (721)
243 cd01124 KaiC KaiC is a circadi 96.4 0.04 8.8E-07 47.7 11.0 49 114-173 2-50 (187)
244 COG1419 FlhF Flagellar GTP-bin 96.4 0.0088 1.9E-07 56.9 7.0 130 111-274 203-335 (407)
245 PRK14087 dnaA chromosomal repl 96.4 0.028 6.1E-07 55.8 11.0 46 222-267 205-253 (450)
246 PRK05642 DNA replication initi 96.4 0.02 4.4E-07 51.6 9.0 42 223-264 97-140 (234)
247 cd01120 RecA-like_NTPases RecA 96.4 0.036 7.8E-07 46.6 10.0 38 114-161 2-39 (165)
248 COG1484 DnaC DNA replication p 96.4 0.037 8E-07 50.4 10.5 49 110-169 104-152 (254)
249 PRK05580 primosome assembly pr 96.4 0.031 6.7E-07 58.7 11.3 95 303-398 173-267 (679)
250 TIGR00595 priA primosomal prot 96.3 0.023 5.1E-07 57.3 9.9 94 303-397 8-101 (505)
251 TIGR01074 rep ATP-dependent DN 96.3 0.024 5.2E-07 59.8 10.5 69 97-173 2-70 (664)
252 TIGR00362 DnaA chromosomal rep 96.3 0.032 6.9E-07 55.0 10.7 46 224-269 200-248 (405)
253 PRK10919 ATP-dependent DNA hel 96.3 0.011 2.4E-07 61.9 7.7 70 96-173 2-71 (672)
254 PRK12422 chromosomal replicati 96.3 0.025 5.4E-07 56.0 9.6 51 223-273 202-255 (445)
255 PHA03333 putative ATPase subun 96.3 0.068 1.5E-06 54.5 12.6 147 97-263 170-332 (752)
256 PRK13709 conjugal transfer nic 96.3 0.046 9.9E-07 62.4 12.6 64 96-165 967-1032(1747)
257 PRK08769 DNA polymerase III su 96.3 0.055 1.2E-06 50.9 11.3 44 94-138 2-52 (319)
258 PRK14088 dnaA chromosomal repl 96.3 0.047 1E-06 54.2 11.4 50 223-272 194-246 (440)
259 PF00308 Bac_DnaA: Bacterial d 96.2 0.016 3.4E-07 51.7 7.3 46 222-267 96-144 (219)
260 PTZ00112 origin recognition co 96.2 0.089 1.9E-06 55.3 13.3 28 222-250 868-895 (1164)
261 PRK14956 DNA polymerase III su 96.2 0.019 4.2E-07 56.5 8.3 18 114-131 43-60 (484)
262 PLN03025 replication factor C 96.1 0.054 1.2E-06 51.4 10.9 39 223-262 99-137 (319)
263 PRK14873 primosome assembly pr 96.1 0.042 9E-07 57.1 10.6 96 302-398 170-266 (665)
264 PRK08084 DNA replication initi 96.1 0.021 4.5E-07 51.6 7.5 18 110-127 44-61 (235)
265 COG4626 Phage terminase-like p 96.1 0.032 7E-07 55.1 9.2 145 96-261 61-223 (546)
266 PRK13342 recombination factor 96.1 0.039 8.5E-07 54.4 10.1 38 223-264 92-129 (413)
267 TIGR02881 spore_V_K stage V sp 96.1 0.047 1E-06 50.2 10.0 17 112-128 43-59 (261)
268 PRK11331 5-methylcytosine-spec 96.1 0.017 3.6E-07 56.3 7.1 33 97-129 180-212 (459)
269 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.028 6.1E-07 50.4 8.3 19 110-128 37-55 (226)
270 COG1435 Tdk Thymidine kinase [ 96.1 0.037 8E-07 47.1 8.2 91 112-236 5-95 (201)
271 PRK14086 dnaA chromosomal repl 96.1 0.019 4.2E-07 58.2 7.7 47 222-268 376-425 (617)
272 PRK05707 DNA polymerase III su 96.0 0.013 2.9E-07 55.4 6.1 41 96-137 3-47 (328)
273 PRK14964 DNA polymerase III su 96.0 0.038 8.3E-07 55.0 9.4 20 112-131 36-55 (491)
274 PRK08903 DnaA regulatory inact 96.0 0.036 7.7E-07 49.8 8.6 41 223-264 90-132 (227)
275 PRK07764 DNA polymerase III su 96.0 0.038 8.2E-07 58.8 9.8 43 222-265 119-161 (824)
276 PRK13833 conjugal transfer pro 96.0 0.026 5.6E-07 53.1 7.7 63 89-161 123-186 (323)
277 PHA03368 DNA packaging termina 96.0 0.042 9.2E-07 55.7 9.5 132 110-263 253-390 (738)
278 TIGR02760 TraI_TIGR conjugativ 96.0 0.047 1E-06 63.8 11.2 62 96-165 1019-1084(1960)
279 PRK00771 signal recognition pa 96.0 0.088 1.9E-06 51.8 11.5 50 225-274 177-228 (437)
280 TIGR01073 pcrA ATP-dependent D 96.0 0.039 8.4E-07 58.8 9.9 72 95-174 3-74 (726)
281 PRK13341 recombination factor 96.0 0.036 7.8E-07 58.2 9.3 43 223-269 109-151 (725)
282 PRK06995 flhF flagellar biosyn 95.9 0.042 9.2E-07 54.5 9.3 22 111-132 256-277 (484)
283 PRK10917 ATP-dependent DNA hel 95.9 0.056 1.2E-06 56.9 10.8 78 319-396 309-390 (681)
284 PF05127 Helicase_RecD: Helica 95.9 0.0025 5.4E-08 54.0 0.6 124 115-264 1-124 (177)
285 TIGR01547 phage_term_2 phage t 95.9 0.021 4.7E-07 56.0 7.2 134 113-265 3-142 (396)
286 PF05496 RuvB_N: Holliday junc 95.8 0.037 8.1E-07 48.5 7.4 17 112-128 51-67 (233)
287 TIGR02785 addA_Gpos recombinat 95.8 0.043 9.3E-07 61.7 9.9 122 97-234 2-126 (1232)
288 PRK06731 flhF flagellar biosyn 95.8 0.18 4E-06 46.2 12.2 130 110-275 74-209 (270)
289 PRK14960 DNA polymerase III su 95.8 0.028 6.1E-07 57.3 7.3 40 222-262 117-156 (702)
290 KOG2028 ATPase related to the 95.8 0.034 7.3E-07 51.8 7.1 96 112-263 163-258 (554)
291 CHL00181 cbbX CbbX; Provisiona 95.8 0.23 5E-06 46.2 12.9 20 111-130 59-78 (287)
292 PRK06645 DNA polymerase III su 95.8 0.083 1.8E-06 53.0 10.6 19 113-131 45-63 (507)
293 PRK12402 replication factor C 95.7 0.093 2E-06 50.3 10.6 40 222-262 124-163 (337)
294 PRK07994 DNA polymerase III su 95.7 0.1 2.3E-06 53.7 11.1 18 114-131 41-58 (647)
295 PRK12726 flagellar biosynthesi 95.7 0.077 1.7E-06 50.6 9.3 22 111-132 206-227 (407)
296 PRK07003 DNA polymerase III su 95.6 0.048 1E-06 56.5 8.4 42 222-264 118-159 (830)
297 COG0593 DnaA ATPase involved i 95.6 0.057 1.2E-06 52.1 8.4 46 223-268 175-223 (408)
298 PRK14723 flhF flagellar biosyn 95.6 0.061 1.3E-06 56.1 9.2 130 111-274 185-317 (767)
299 PHA03372 DNA packaging termina 95.6 0.16 3.4E-06 51.1 11.5 126 111-262 202-336 (668)
300 COG1444 Predicted P-loop ATPas 95.6 0.086 1.9E-06 54.6 10.0 148 89-263 207-356 (758)
301 PRK12724 flagellar biosynthesi 95.6 0.23 5.1E-06 48.2 12.4 124 113-274 225-356 (432)
302 KOG1513 Nuclear helicase MOP-3 95.6 0.031 6.8E-07 57.0 6.6 81 365-445 851-943 (1300)
303 KOG0991 Replication factor C, 95.5 0.039 8.5E-07 48.1 6.2 18 112-129 49-66 (333)
304 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.03 6.6E-07 53.7 6.2 26 110-136 133-158 (358)
305 PHA02544 44 clamp loader, smal 95.5 0.076 1.6E-06 50.4 9.0 40 223-262 100-139 (316)
306 KOG0739 AAA+-type ATPase [Post 95.5 0.42 9.1E-06 43.5 12.8 169 53-283 112-298 (439)
307 PRK11823 DNA repair protein Ra 95.5 0.17 3.6E-06 50.3 11.6 92 110-237 79-170 (446)
308 COG1222 RPT1 ATP-dependent 26S 95.4 0.22 4.7E-06 46.6 11.1 53 71-127 145-201 (406)
309 COG1474 CDC6 Cdc6-related prot 95.4 0.39 8.5E-06 46.3 13.5 26 112-138 43-68 (366)
310 PRK14958 DNA polymerase III su 95.4 0.07 1.5E-06 53.8 8.8 18 113-130 40-57 (509)
311 PRK14961 DNA polymerase III su 95.4 0.088 1.9E-06 51.0 9.2 17 114-130 41-57 (363)
312 PF00004 AAA: ATPase family as 95.4 0.2 4.4E-06 40.3 10.1 16 224-239 59-74 (132)
313 PRK13894 conjugal transfer ATP 95.4 0.051 1.1E-06 51.2 7.2 65 87-161 125-190 (319)
314 KOG0733 Nuclear AAA ATPase (VC 95.4 0.05 1.1E-06 54.1 7.2 56 69-127 503-561 (802)
315 COG4962 CpaF Flp pilus assembl 95.4 0.025 5.4E-07 52.6 4.9 58 93-161 154-212 (355)
316 COG1198 PriA Primosomal protei 95.4 0.047 1E-06 56.7 7.4 98 297-395 222-319 (730)
317 PF13177 DNA_pol3_delta2: DNA 95.4 0.091 2E-06 44.3 8.0 42 222-264 101-142 (162)
318 PRK14962 DNA polymerase III su 95.3 0.087 1.9E-06 52.6 8.9 17 114-130 39-55 (472)
319 TIGR00643 recG ATP-dependent D 95.3 0.088 1.9E-06 55.0 9.4 79 319-397 283-365 (630)
320 PF05621 TniB: Bacterial TniB 95.3 0.054 1.2E-06 49.8 6.8 109 112-251 62-175 (302)
321 cd00984 DnaB_C DnaB helicase C 95.3 0.16 3.4E-06 46.1 10.0 39 109-156 11-49 (242)
322 TIGR02782 TrbB_P P-type conjug 95.3 0.087 1.9E-06 49.3 8.3 65 87-161 109-174 (299)
323 COG2804 PulE Type II secretory 95.3 0.03 6.5E-07 54.8 5.3 40 98-138 243-284 (500)
324 PTZ00293 thymidine kinase; Pro 95.3 0.11 2.4E-06 45.4 8.3 38 111-158 4-41 (211)
325 PRK00411 cdc6 cell division co 95.2 0.13 2.7E-06 50.6 9.8 24 112-136 56-79 (394)
326 TIGR03600 phage_DnaB phage rep 95.2 0.26 5.6E-06 48.9 11.8 43 105-156 188-230 (421)
327 PRK14959 DNA polymerase III su 95.2 0.063 1.4E-06 54.8 7.5 20 113-132 40-59 (624)
328 PRK05563 DNA polymerase III su 95.1 0.078 1.7E-06 54.2 8.0 19 113-131 40-58 (559)
329 PRK14955 DNA polymerase III su 95.1 0.13 2.7E-06 50.6 9.1 19 113-131 40-58 (397)
330 PRK06964 DNA polymerase III su 95.0 0.2 4.2E-06 47.7 10.0 40 97-137 2-46 (342)
331 PRK14949 DNA polymerase III su 95.0 0.093 2E-06 55.5 8.5 17 114-130 41-57 (944)
332 TIGR03499 FlhF flagellar biosy 95.0 0.046 9.9E-07 50.8 5.7 19 111-129 194-212 (282)
333 PRK05896 DNA polymerase III su 95.0 0.14 3.1E-06 52.1 9.4 19 112-130 39-57 (605)
334 PF01695 IstB_IS21: IstB-like 95.0 0.049 1.1E-06 46.7 5.3 46 108-164 44-89 (178)
335 TIGR02525 plasmid_TraJ plasmid 95.0 0.065 1.4E-06 51.5 6.6 27 110-137 148-174 (372)
336 TIGR03015 pepcterm_ATPase puta 94.9 0.11 2.4E-06 48.0 8.0 32 96-127 23-59 (269)
337 PRK06904 replicative DNA helic 94.9 0.44 9.5E-06 47.7 12.7 117 109-237 219-348 (472)
338 PRK14952 DNA polymerase III su 94.9 0.13 2.9E-06 52.5 9.1 18 114-131 38-55 (584)
339 PRK12323 DNA polymerase III su 94.9 0.1 2.3E-06 53.3 8.1 18 113-130 40-57 (700)
340 TIGR02880 cbbX_cfxQ probable R 94.9 0.22 4.8E-06 46.3 9.8 18 111-128 58-75 (284)
341 PRK14950 DNA polymerase III su 94.9 0.21 4.5E-06 51.7 10.5 18 113-130 40-57 (585)
342 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.72 1.6E-05 44.4 13.4 109 111-267 62-172 (362)
343 cd01121 Sms Sms (bacterial rad 94.9 0.2 4.3E-06 48.4 9.6 91 110-236 81-171 (372)
344 PRK14954 DNA polymerase III su 94.8 0.2 4.4E-06 51.6 10.2 19 113-131 40-58 (620)
345 PRK08691 DNA polymerase III su 94.8 0.12 2.5E-06 53.4 8.4 18 113-130 40-57 (709)
346 TIGR01425 SRP54_euk signal rec 94.8 0.59 1.3E-05 45.8 12.8 58 113-183 102-161 (429)
347 PRK14957 DNA polymerase III su 94.8 0.13 2.9E-06 52.0 8.7 17 114-130 41-57 (546)
348 TIGR00064 ftsY signal recognit 94.8 0.34 7.3E-06 44.7 10.7 53 222-274 153-213 (272)
349 PF05876 Terminase_GpA: Phage 94.8 0.035 7.5E-07 56.7 4.5 125 96-236 16-147 (557)
350 PRK08533 flagellar accessory p 94.8 0.38 8.3E-06 43.2 10.8 53 110-173 23-75 (230)
351 PRK06871 DNA polymerase III su 94.7 0.14 3E-06 48.3 8.0 40 97-137 3-49 (325)
352 KOG0738 AAA+-type ATPase [Post 94.7 0.22 4.8E-06 47.0 9.0 16 112-127 246-261 (491)
353 PRK10867 signal recognition pa 94.7 0.41 8.9E-06 47.1 11.4 20 113-132 102-121 (433)
354 PRK09111 DNA polymerase III su 94.6 0.15 3.3E-06 52.3 8.6 19 113-131 48-66 (598)
355 PRK13851 type IV secretion sys 94.6 0.049 1.1E-06 51.8 4.7 43 108-161 159-201 (344)
356 PRK12727 flagellar biosynthesi 94.5 0.18 4E-06 50.3 8.7 128 110-273 349-480 (559)
357 KOG0742 AAA+-type ATPase [Post 94.5 0.094 2E-06 49.7 6.1 16 112-127 385-400 (630)
358 PF03796 DnaB_C: DnaB-like hel 94.5 0.23 5.1E-06 45.5 8.9 137 110-261 18-178 (259)
359 PRK04195 replication factor C 94.5 0.25 5.5E-06 49.8 9.9 18 111-128 39-56 (482)
360 PRK05986 cob(I)alamin adenolsy 94.4 1.2 2.5E-05 38.4 12.2 145 109-272 20-167 (191)
361 TIGR00580 mfd transcription-re 94.4 0.2 4.3E-06 54.3 9.4 78 319-396 499-580 (926)
362 TIGR02928 orc1/cdc6 family rep 94.4 0.15 3.3E-06 49.5 7.9 24 112-136 41-64 (365)
363 KOG0741 AAA+-type ATPase [Post 94.4 0.13 2.7E-06 50.5 6.9 43 220-262 321-378 (744)
364 PRK14963 DNA polymerase III su 94.4 0.29 6.3E-06 49.4 9.9 16 114-129 39-54 (504)
365 cd01129 PulE-GspE PulE/GspE Th 94.4 0.12 2.5E-06 47.6 6.6 38 98-136 65-104 (264)
366 PRK08840 replicative DNA helic 94.4 0.57 1.2E-05 46.8 11.9 44 104-156 210-253 (464)
367 PRK07004 replicative DNA helic 94.3 0.29 6.4E-06 48.8 9.8 112 110-236 212-337 (460)
368 PRK08939 primosomal protein Dn 94.3 0.45 9.8E-06 44.7 10.5 25 111-136 156-180 (306)
369 PRK13900 type IV secretion sys 94.2 0.15 3.1E-06 48.5 7.1 42 109-161 158-199 (332)
370 PRK05973 replicative DNA helic 94.2 0.1 2.2E-06 46.7 5.7 80 81-172 25-114 (237)
371 COG1618 Predicted nucleotide k 94.2 0.023 4.9E-07 46.7 1.4 116 112-249 6-128 (179)
372 PRK08699 DNA polymerase III su 94.2 0.56 1.2E-05 44.5 10.9 33 97-129 2-39 (325)
373 PRK14721 flhF flagellar biosyn 94.2 0.12 2.7E-06 50.4 6.6 131 110-274 190-323 (420)
374 PRK07940 DNA polymerase III su 94.1 0.47 1E-05 46.2 10.5 46 222-268 116-161 (394)
375 PRK14965 DNA polymerase III su 94.1 0.37 8.1E-06 49.6 10.3 17 114-130 41-57 (576)
376 PF01443 Viral_helicase1: Vira 94.1 0.046 1E-06 49.3 3.4 14 114-127 1-14 (234)
377 cd00561 CobA_CobO_BtuR ATP:cor 94.1 1.3 2.8E-05 37.0 11.6 52 221-272 93-147 (159)
378 TIGR01420 pilT_fam pilus retra 94.1 0.13 2.7E-06 49.4 6.5 43 110-161 121-163 (343)
379 TIGR00678 holB DNA polymerase 94.1 0.38 8.3E-06 41.7 9.0 25 112-137 15-39 (188)
380 PRK00440 rfc replication facto 94.1 0.51 1.1E-05 44.7 10.7 16 113-128 40-55 (319)
381 COG0470 HolB ATPase involved i 94.0 0.29 6.2E-06 46.6 8.9 41 221-262 107-147 (325)
382 COG3972 Superfamily I DNA and 94.0 0.2 4.3E-06 48.8 7.3 79 85-173 152-230 (660)
383 TIGR03881 KaiC_arch_4 KaiC dom 94.0 0.61 1.3E-05 41.8 10.5 52 110-172 19-70 (229)
384 COG1132 MdlB ABC-type multidru 94.0 0.083 1.8E-06 54.7 5.3 29 108-138 352-380 (567)
385 PRK09112 DNA polymerase III su 93.9 0.2 4.4E-06 48.0 7.5 25 113-138 47-71 (351)
386 PRK10436 hypothetical protein; 93.9 0.15 3.3E-06 50.6 6.7 38 98-136 203-242 (462)
387 PRK05748 replicative DNA helic 93.9 0.77 1.7E-05 45.9 11.8 114 110-236 202-327 (448)
388 PRK06067 flagellar accessory p 93.9 0.79 1.7E-05 41.3 11.0 53 110-173 24-76 (234)
389 PRK08006 replicative DNA helic 93.9 0.92 2E-05 45.4 12.2 115 110-236 223-349 (471)
390 TIGR00959 ffh signal recogniti 93.8 1.1 2.4E-05 44.1 12.4 20 113-132 101-120 (428)
391 PRK06090 DNA polymerase III su 93.8 0.2 4.3E-06 47.2 7.0 41 96-137 3-50 (319)
392 TIGR00665 DnaB replicative DNA 93.8 0.72 1.6E-05 45.9 11.5 38 110-156 194-231 (434)
393 PRK14969 DNA polymerase III su 93.8 0.2 4.3E-06 50.9 7.5 17 114-130 41-57 (527)
394 PRK06647 DNA polymerase III su 93.7 0.31 6.7E-06 49.9 8.8 18 113-130 40-57 (563)
395 PRK07993 DNA polymerase III su 93.7 0.17 3.7E-06 48.1 6.6 41 96-137 2-49 (334)
396 PRK14948 DNA polymerase III su 93.6 0.43 9.3E-06 49.5 9.7 19 112-130 39-57 (620)
397 PRK13764 ATPase; Provisional 93.6 0.15 3.2E-06 52.2 6.2 26 110-136 256-281 (602)
398 PRK14951 DNA polymerase III su 93.6 0.15 3.1E-06 52.5 6.1 17 114-130 41-57 (618)
399 PRK08506 replicative DNA helic 93.6 0.76 1.6E-05 46.1 11.1 113 110-236 191-315 (472)
400 TIGR02868 CydC thiol reductant 93.6 0.089 1.9E-06 53.9 4.7 25 110-136 360-384 (529)
401 COG1219 ClpX ATP-dependent pro 93.5 0.046 1E-06 50.0 2.2 27 110-138 96-122 (408)
402 COG5008 PilU Tfp pilus assembl 93.5 0.069 1.5E-06 47.6 3.1 15 113-127 129-143 (375)
403 cd03115 SRP The signal recogni 93.4 3.6 7.7E-05 35.0 13.8 16 114-129 3-18 (173)
404 PF03237 Terminase_6: Terminas 93.4 0.78 1.7E-05 44.5 11.0 142 115-276 1-152 (384)
405 KOG2228 Origin recognition com 93.4 2 4.4E-05 40.1 12.4 56 208-263 122-181 (408)
406 KOG1513 Nuclear helicase MOP-3 93.4 0.16 3.4E-06 52.1 5.7 156 95-262 263-453 (1300)
407 cd01130 VirB11-like_ATPase Typ 93.3 0.17 3.8E-06 43.7 5.5 31 97-127 10-41 (186)
408 KOG0730 AAA+-type ATPase [Post 93.3 0.33 7.1E-06 49.1 7.9 58 68-128 425-485 (693)
409 COG1110 Reverse gyrase [DNA re 93.2 0.23 5E-06 52.6 6.8 79 319-397 124-211 (1187)
410 KOG0058 Peptide exporter, ABC 93.2 0.19 4.1E-06 51.4 6.0 41 221-261 620-660 (716)
411 PF10593 Z1: Z1 domain; Inter 93.1 0.44 9.5E-06 42.9 7.8 93 345-442 110-207 (239)
412 TIGR00767 rho transcription te 93.1 0.5 1.1E-05 45.6 8.4 18 110-127 167-184 (415)
413 PRK03992 proteasome-activating 93.1 0.32 7E-06 47.5 7.5 17 111-127 165-181 (389)
414 cd01126 TraG_VirD4 The TraG/Tr 93.0 0.095 2.1E-06 51.3 3.8 48 113-172 1-48 (384)
415 KOG1132 Helicase of the DEAD s 93.0 2.1 4.5E-05 45.0 13.1 106 322-428 563-722 (945)
416 PRK09376 rho transcription ter 93.0 0.61 1.3E-05 44.8 8.9 81 47-127 80-185 (416)
417 PRK10689 transcription-repair 93.0 0.67 1.5E-05 51.6 10.5 77 319-395 648-728 (1147)
418 PRK07471 DNA polymerase III su 93.0 1 2.2E-05 43.4 10.7 25 113-138 43-67 (365)
419 KOG0734 AAA+-type ATPase conta 93.0 0.85 1.8E-05 45.1 9.8 42 223-264 396-448 (752)
420 PRK07133 DNA polymerase III su 92.9 0.76 1.7E-05 48.0 10.2 17 114-130 43-59 (725)
421 COG2109 BtuR ATP:corrinoid ade 92.8 1.2 2.5E-05 37.9 9.2 51 222-272 121-174 (198)
422 COG0630 VirB11 Type IV secreto 92.8 0.18 4E-06 47.4 5.2 57 94-161 125-182 (312)
423 PF02572 CobA_CobO_BtuR: ATP:c 92.8 2.1 4.6E-05 36.2 10.9 140 114-272 6-148 (172)
424 COG2255 RuvB Holliday junction 92.8 0.26 5.7E-06 44.6 5.8 18 112-129 53-70 (332)
425 PRK08451 DNA polymerase III su 92.7 0.86 1.9E-05 46.1 10.0 18 221-238 115-132 (535)
426 PF05729 NACHT: NACHT domain 92.7 1 2.2E-05 37.7 9.3 24 113-137 2-25 (166)
427 TIGR00708 cobA cob(I)alamin ad 92.7 1.4 3.1E-05 37.3 9.7 52 221-272 95-149 (173)
428 TIGR02538 type_IV_pilB type IV 92.6 0.18 4E-06 51.7 5.3 44 89-136 295-340 (564)
429 PRK11034 clpA ATP-dependent Cl 92.6 1.3 2.9E-05 47.0 11.6 43 225-267 280-327 (758)
430 TIGR03877 thermo_KaiC_1 KaiC d 92.6 0.21 4.6E-06 45.1 5.1 53 110-173 20-72 (237)
431 PRK14953 DNA polymerase III su 92.6 0.45 9.7E-06 47.8 7.8 34 410-443 408-441 (486)
432 PF06733 DEAD_2: DEAD_2; Inte 92.5 0.068 1.5E-06 45.7 1.8 45 193-237 113-159 (174)
433 PRK08760 replicative DNA helic 92.5 1 2.2E-05 45.2 10.3 114 110-236 228-352 (476)
434 PRK06305 DNA polymerase III su 92.5 1.2 2.7E-05 44.3 10.8 18 113-130 41-58 (451)
435 PF02534 T4SS-DNA_transf: Type 92.5 0.14 2.9E-06 51.7 4.1 50 112-173 45-94 (469)
436 KOG0344 ATP-dependent RNA heli 92.5 1.1 2.5E-05 44.5 10.1 99 119-234 365-467 (593)
437 PRK06321 replicative DNA helic 92.4 1.7 3.6E-05 43.6 11.6 113 110-236 225-349 (472)
438 PF01637 Arch_ATPase: Archaeal 92.4 0.13 2.9E-06 46.0 3.6 54 206-263 105-165 (234)
439 PRK09435 membrane ATPase/prote 92.4 2.3 5E-05 40.3 11.9 14 113-126 58-71 (332)
440 COG0552 FtsY Signal recognitio 92.3 2.7 5.8E-05 39.3 11.8 128 114-274 142-280 (340)
441 cd01131 PilT Pilus retraction 92.2 0.19 4.1E-06 44.0 4.2 22 114-136 4-25 (198)
442 PHA00729 NTP-binding motif con 92.2 0.43 9.3E-06 42.3 6.3 16 113-128 19-34 (226)
443 TIGR02639 ClpA ATP-dependent C 92.1 3.1 6.6E-05 44.5 13.8 18 111-128 203-220 (731)
444 COG4178 ABC-type uncharacteriz 92.0 0.91 2E-05 46.2 9.1 39 221-259 531-570 (604)
445 TIGR03819 heli_sec_ATPase heli 92.0 0.41 8.8E-06 45.7 6.5 63 86-161 154-217 (340)
446 PF13555 AAA_29: P-loop contai 92.0 0.18 3.9E-06 34.4 2.9 24 111-136 23-46 (62)
447 COG2909 MalT ATP-dependent tra 92.0 0.3 6.4E-06 50.9 5.7 39 224-262 130-169 (894)
448 TIGR02533 type_II_gspE general 92.0 0.29 6.4E-06 49.1 5.7 44 89-136 221-266 (486)
449 cd01125 repA Hexameric Replica 92.0 1.1 2.5E-05 40.4 9.2 44 113-156 3-48 (239)
450 KOG0060 Long-chain acyl-CoA tr 92.0 0.11 2.3E-06 51.7 2.5 27 108-136 458-484 (659)
451 PF00437 T2SE: Type II/IV secr 92.0 0.14 3.1E-06 47.3 3.3 43 109-161 125-167 (270)
452 PRK13897 type IV secretion sys 91.9 0.2 4.4E-06 51.4 4.6 49 112-172 159-207 (606)
453 TIGR02237 recomb_radB DNA repa 91.9 0.73 1.6E-05 40.6 7.7 39 110-158 11-49 (209)
454 TIGR02012 tigrfam_recA protein 91.7 0.36 7.9E-06 45.4 5.6 44 110-163 54-97 (321)
455 PF12846 AAA_10: AAA-like doma 91.7 0.25 5.5E-06 46.3 4.7 43 111-163 1-43 (304)
456 PRK14971 DNA polymerase III su 91.6 0.79 1.7E-05 47.5 8.5 41 221-262 119-159 (614)
457 cd01128 rho_factor Transcripti 91.6 0.57 1.2E-05 42.5 6.6 18 109-126 14-31 (249)
458 PRK05595 replicative DNA helic 91.6 0.73 1.6E-05 46.0 8.0 39 110-157 200-238 (444)
459 TIGR02397 dnaX_nterm DNA polym 91.6 2.1 4.5E-05 41.3 11.1 23 113-136 38-60 (355)
460 TIGR00416 sms DNA repair prote 91.4 1.8 3.9E-05 43.2 10.5 92 110-237 93-184 (454)
461 COG1200 RecG RecG-like helicas 91.3 1.1 2.5E-05 45.7 9.0 77 318-395 309-390 (677)
462 KOG0737 AAA+-type ATPase [Post 91.3 1.6 3.4E-05 41.3 9.2 52 74-128 89-144 (386)
463 COG1485 Predicted ATPase [Gene 91.3 4.9 0.00011 37.9 12.4 108 112-267 66-175 (367)
464 PRK07399 DNA polymerase III su 91.3 1.6 3.4E-05 41.3 9.5 58 202-261 104-161 (314)
465 PRK09354 recA recombinase A; P 91.2 0.44 9.5E-06 45.3 5.7 44 110-163 59-102 (349)
466 KOG0741 AAA+-type ATPase [Post 91.2 2.3 5E-05 42.2 10.5 70 79-160 494-575 (744)
467 TIGR00763 lon ATP-dependent pr 91.2 0.85 1.8E-05 49.0 8.5 17 111-127 347-363 (775)
468 PRK05636 replicative DNA helic 91.2 1.4 3E-05 44.6 9.5 19 111-129 265-283 (505)
469 KOG0331 ATP-dependent RNA heli 91.1 1.3 2.8E-05 44.2 8.9 75 147-231 339-417 (519)
470 PRK13850 type IV secretion sys 91.1 0.33 7.1E-06 50.6 5.1 48 112-171 140-187 (670)
471 PHA00012 I assembly protein 91.0 3.3 7.2E-05 38.7 10.8 23 114-136 4-26 (361)
472 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.7 0.67 1.4E-05 38.2 5.8 30 222-251 87-116 (144)
473 TIGR01243 CDC48 AAA family ATP 90.7 1.2 2.5E-05 47.7 9.0 17 111-127 487-503 (733)
474 KOG0298 DEAD box-containing he 90.6 0.49 1.1E-05 51.4 5.8 97 316-418 1217-1314(1394)
475 PRK09183 transposase/IS protei 90.6 0.33 7.2E-06 44.4 4.2 22 108-129 99-120 (259)
476 TIGR02640 gas_vesic_GvpN gas v 90.6 0.34 7.3E-06 44.5 4.3 27 103-129 13-39 (262)
477 COG2812 DnaX DNA polymerase II 90.5 0.6 1.3E-05 46.7 6.1 38 221-262 117-156 (515)
478 PHA00149 DNA encapsidation pro 90.5 2.9 6.2E-05 38.1 9.7 131 114-262 20-159 (331)
479 PRK14970 DNA polymerase III su 90.5 1.4 3.1E-05 42.7 8.7 16 113-128 41-56 (367)
480 CHL00176 ftsH cell division pr 90.5 0.72 1.6E-05 48.0 6.9 16 112-127 217-232 (638)
481 TIGR01243 CDC48 AAA family ATP 90.4 1.9 4.2E-05 46.1 10.3 18 110-127 211-228 (733)
482 COG0513 SrmB Superfamily II DN 90.4 1.5 3.2E-05 44.7 9.1 69 323-395 102-180 (513)
483 PRK09087 hypothetical protein; 90.4 1.2 2.6E-05 39.9 7.5 16 112-127 45-60 (226)
484 PLN00020 ribulose bisphosphate 90.2 0.2 4.4E-06 47.5 2.4 17 112-128 149-165 (413)
485 TIGR03346 chaperone_ClpB ATP-d 90.2 3.2 7E-05 45.2 11.9 20 110-129 193-212 (852)
486 PF02456 Adeno_IVa2: Adenoviru 90.1 0.58 1.3E-05 42.9 5.1 40 114-161 90-129 (369)
487 PF10412 TrwB_AAD_bind: Type I 90.1 0.35 7.6E-06 47.2 4.1 45 109-163 13-57 (386)
488 PF05894 Podovirus_Gp16: Podov 90.0 3.1 6.7E-05 38.4 9.7 130 114-261 20-159 (333)
489 KOG0333 U5 snRNP-like RNA heli 90.0 2 4.3E-05 42.4 8.9 71 148-228 516-590 (673)
490 PF06745 KaiC: KaiC; InterPro 90.0 0.41 9E-06 42.8 4.3 53 110-172 18-70 (226)
491 KOG0740 AAA+-type ATPase [Post 89.9 1.5 3.2E-05 42.7 8.0 51 223-273 245-309 (428)
492 PRK04328 hypothetical protein; 89.9 0.56 1.2E-05 42.7 5.1 53 110-173 22-74 (249)
493 PRK10416 signal recognition pa 89.9 2.2 4.8E-05 40.3 9.1 46 222-267 195-248 (318)
494 TIGR03743 SXT_TraD conjugative 89.9 0.7 1.5E-05 48.1 6.3 55 110-174 175-231 (634)
495 TIGR01193 bacteriocin_ABC ABC- 89.9 0.83 1.8E-05 48.7 7.1 26 110-137 499-524 (708)
496 TIGR02858 spore_III_AA stage I 89.9 3.3 7.1E-05 38.1 10.0 31 103-135 100-133 (270)
497 PRK07414 cob(I)yrinic acid a,c 89.8 10 0.00022 32.3 12.0 52 221-272 113-167 (178)
498 PF01935 DUF87: Domain of unkn 89.8 0.48 1E-05 42.5 4.5 44 111-163 23-66 (229)
499 cd01127 TrwB Bacterial conjuga 89.7 0.3 6.5E-06 48.2 3.4 46 108-163 39-84 (410)
500 TIGR03878 thermo_KaiC_2 KaiC d 89.7 0.84 1.8E-05 41.8 6.1 37 110-156 35-71 (259)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-77 Score=569.29 Aligned_cols=428 Identities=34% Similarity=0.599 Sum_probs=385.0
Q ss_pred CCCCCccccCccccCCCcccccCCCHHHHHHHHHhcCceeeCCC-CCCcccCccc-------------------------
Q 012059 25 ERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDA-VPAPILSFSS------------------------- 78 (472)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~------------------------- 78 (472)
..++++...+|...+. .......+.+..++..+..+.+.. +|.|..+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPS----VKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSA 91 (519)
T ss_pred cccCcccccccccccc----cccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcch
Confidence 4567778888877754 566666667777777777777755 6666655544
Q ss_pred ----CCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEE
Q 012059 79 ----CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 154 (472)
Q Consensus 79 ----~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~li 154 (472)
+++++.....++..||+.|+|+|.+.||.+++|+|++..|.||||||++|++|++.++... ......+.+|++||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~-~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNE-QGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhc-cccccCCCCCeEEE
Confidence 4555666667779999999999999999999999999999999999999999999999863 22234467899999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 012059 155 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 234 (472)
Q Consensus 155 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~ 234 (472)
++||||||.|+...+.+++..+.+++.|++||.....|...+..+.+|+|+||+++.++++.+..+++++.|+|+||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CC-CceEeecccccHHHHHHHhhhcCCcEEEEeCCCC--CCccceeEEEEEecchhHHHHHH
Q 012059 235 MLQRGFRDQVMQIFRAI-SL-PQILMYSATISQEVEKMSSSISKDIVVVSVGKPN--MPNKAVKQLAIWVESNKKKQKLF 310 (472)
Q Consensus 235 ~~~~~~~~~~~~i~~~~-~~-~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 310 (472)
|++++|+++++.|+..+ +. .|++++|||+|.+++.++..++.+++.+.++... ....++.|+...+....+...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 33 4799999999999999999999999999988653 66778899999999888888888
Q ss_pred HHHHhcC-CCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 012059 311 DILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 389 (472)
Q Consensus 311 ~~l~~~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 389 (472)
.+|.... ..++|+||||+++..|+.++..|+ ..++++..+||+.++.+|+.+++.|++|+..|||||++++||||+|+
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~-~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLR-RKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHH-hcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 8888765 566799999999999999999998 66799999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhhc
Q 012059 390 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 458 (472)
Q Consensus 390 ~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 458 (472)
+++|||||+|.+.++|+||+||+||+|+.|.+++|+...+......+.+.+++.+|.+|+.+.+++...
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999986444
No 2
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.1e-75 Score=586.49 Aligned_cols=438 Identities=76% Similarity=1.188 Sum_probs=403.4
Q ss_pred CCCCCCCCCCCCCCccccCccccCCCcccccCCCHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCC
Q 012059 16 MRVVPPPPPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYD 95 (472)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~ 95 (472)
-..+++|+++++++++++||...+. ...+++..+++.+++.+++.+.|...|.|+.+|+++++++.+++.|...||.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~ 142 (518)
T PLN00206 66 RVAVGAPKPKRLPATDECFYVRDPG---STSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYE 142 (518)
T ss_pred cCCcCCCchhhcCCcCCcCCccCcc---hhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCC
Confidence 3456777888999999999997664 2346999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|+|+|.++||.+++|+|++++||||||||++|++|++.++............++++||++||++||.|+.+.++.+...
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~ 222 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKG 222 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999988754332223346789999999999999999999999988
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCc
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQ 255 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~ 255 (472)
.++++..++||.....+...+..+++|+|+||++|.+++.+....+.++++||+||||++++++|..++..++..++.+|
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q 302 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQ 302 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCc
Confidence 88999999999998888888888999999999999999998888899999999999999999999999999999999999
Q ss_pred eEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHH
Q 012059 256 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 335 (472)
Q Consensus 256 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~ 335 (472)
++++|||+++.+..++..+..++..+..+........+.+...++....+...+..++.......+++||||+++..++.
T Consensus 303 ~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~ 382 (518)
T PLN00206 303 VLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADL 382 (518)
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHH
Confidence 99999999999999999999999998888777777778888888888888888888887666556789999999999999
Q ss_pred HHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccC
Q 012059 336 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 415 (472)
Q Consensus 336 l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~ 415 (472)
++..|....++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.
T Consensus 383 l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~ 462 (518)
T PLN00206 383 LANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRM 462 (518)
T ss_pred HHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccC
Confidence 99999856789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchh
Q 012059 416 GDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRY 456 (472)
Q Consensus 416 g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 456 (472)
|..|.+++|+++.+...+..+.+.|+..++.+|++|.++.+
T Consensus 463 g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 463 GEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred CCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 99999999999999999999999999999999999999883
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.2e-73 Score=567.31 Aligned_cols=434 Identities=34% Similarity=0.579 Sum_probs=391.6
Q ss_pred CCCCCCCCCCCCCccccCccccCCCcccccCCCHHHHHHHHHhcCcee-eCCCCCCcccCcccCCCCHHHHHHHHHCCCC
Q 012059 17 RVVPPPPPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINV-KGDAVPAPILSFSSCSLSQKLLQNIEAAGYD 95 (472)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~ 95 (472)
..++. ....++|++++||...+. +..++.++++.+++..++.+ +|..+|.|..+|+++++++.+++.|...||.
T Consensus 77 ~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~ 151 (545)
T PTZ00110 77 QPIDW-KSINLVPFEKNFYKEHPE----VSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFT 151 (545)
T ss_pred CCCCC-ccccccchhhhcccCChh----hhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCC
Confidence 33444 345788999999988775 88999999999999998886 7999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
+|+++|.++||.+++|+|++++||||||||++|++|++.++..... .....++.+|||+||++||.|+.+.+..++..
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~--~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL--LRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--ccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998865321 12245789999999999999999999999988
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCC
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 254 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~ 254 (472)
.++++.+++||.....+...+..+++|+|+||++|.+++......+.++++||+||||++++++|..++..++..+ +..
T Consensus 230 ~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCC
Confidence 8899999999999888888888999999999999999999888889999999999999999999999999999988 778
Q ss_pred ceEeecccccHHHHHHHhhhcC-CcEEEEeCCCC-CCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh
Q 012059 255 QILMYSATISQEVEKMSSSISK-DIVVVSVGKPN-MPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 255 ~~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~ 332 (472)
|++++|||++..+..+++.++. +++.+..+... .....+.+.+..+....+...|..++......+.++||||+++..
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~ 389 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKG 389 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHH
Confidence 9999999999999999988875 56776665543 334567777777777778888888887765567799999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhccc
Q 012059 333 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRA 412 (472)
Q Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~ 412 (472)
++.++..|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+.++|+||+||+
T Consensus 390 a~~l~~~L~-~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRt 468 (545)
T PTZ00110 390 ADFLTKELR-LDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRT 468 (545)
T ss_pred HHHHHHHHH-HcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 999999998 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhhc
Q 012059 413 SQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 458 (472)
Q Consensus 413 ~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 458 (472)
||.|+.|.|++|+++.+...+..+++.|+..++++|++|.+++...
T Consensus 469 GR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 514 (545)
T PTZ00110 469 GRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNER 514 (545)
T ss_pred ccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999996543
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-74 Score=516.91 Aligned_cols=430 Identities=32% Similarity=0.527 Sum_probs=388.0
Q ss_pred CCCCCCCCCccccCccccCCCcccccCCCHHHHHHHHHhcC-ceeeC------CCCCCcccCccc-CCCCHHHHHHHHHC
Q 012059 21 PPPPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLE-INVKG------DAVPAPILSFSS-CSLSQKLLQNIEAA 92 (472)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~p~~~~~~~~-~~l~~~i~~~l~~~ 92 (472)
...|..+||..++||.+.+. .+.|+.+++++++++.. +.+.+ ..+|+|.-+|++ +.-.+++++++.+.
T Consensus 163 ~~kW~~lpPi~knfYke~~e----~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~ 238 (629)
T KOG0336|consen 163 KFKWAKLPPIKKNFYKESNE----TSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKT 238 (629)
T ss_pred hcccccCCchhhhhhhcCch----hccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhc
Confidence 34678899999999998887 88999999999999854 55432 267899999997 57889999999999
Q ss_pred CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 93 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
||.+|+|+|+++||.+++|.|++..|.||+|||++|++|.+.++..+..... ...++.+|+++||++|+.|+.-++.++
T Consensus 239 GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~-qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE-QRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh-ccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 9999999999999999999999999999999999999999988876543332 456889999999999999999988887
Q ss_pred hcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-
Q 012059 173 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI- 251 (472)
Q Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~- 251 (472)
. .-+++.+|++||.+..++...+..+.+|+++||++|.++...+..++..+.|+|+||||+|++++|++++++++-.+
T Consensus 318 s-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR 396 (629)
T KOG0336|consen 318 S-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR 396 (629)
T ss_pred h-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC
Confidence 4 34789999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCC-ccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCc
Q 012059 252 SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP-NKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSR 330 (472)
Q Consensus 252 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~ 330 (472)
+..|+++.|||||+.+..++..++++++.+.++..... ...+.|.+. +.....+..+...+.+....+.++||||.++
T Consensus 397 PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~-v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 397 PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII-VTTDSEKLEIVQFFVANMSSNDKVIIFVSRK 475 (629)
T ss_pred CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE-ecccHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 89999999999999999999999999999999887543 455677764 4444444456666666666778999999999
Q ss_pred hhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhc
Q 012059 331 LGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIG 410 (472)
Q Consensus 331 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~G 410 (472)
..|+.|..-|. ..|+....+||+-.+.+|+..++.|++|+++|||||+++++|+|+|++.||+|||+|.++++|+||+|
T Consensus 476 ~~AD~LSSd~~-l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvG 554 (629)
T KOG0336|consen 476 VMADHLSSDFC-LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVG 554 (629)
T ss_pred hhhhhccchhh-hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhc
Confidence 99999999988 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhhc
Q 012059 411 RASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 458 (472)
Q Consensus 411 R~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 458 (472)
|+||+|+.|.++.|+...|..++.+++++|+++.|++|++|..++++.
T Consensus 555 rtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 555 RTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred ccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986543
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.9e-73 Score=523.07 Aligned_cols=420 Identities=34% Similarity=0.590 Sum_probs=390.3
Q ss_pred ccccCCCcccccCCCHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcE
Q 012059 35 YVRESDENSGFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSL 114 (472)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~ 114 (472)
|+...|....+..|++.+|..|+..+++.++|..+|.|+.+|++.++|.++++.+.+.||..|+|+|++++|..++.+|+
T Consensus 206 ~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~ 285 (673)
T KOG0333|consen 206 WDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDP 285 (673)
T ss_pred ccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCe
Confidence 33344445567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCcchhhHHHHHHHHhhhhh--cccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH
Q 012059 115 LVSANTGSGKTASFLVPVISQCANIRL--HHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 192 (472)
Q Consensus 115 iv~a~TGsGKT~~~~l~~~~~l~~~~~--~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (472)
|..|.||||||.+|++|++..+..... .......+|.++|++|||+|++|+.++-.+|+..++++++.++||.+..++
T Consensus 286 igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq 365 (673)
T KOG0333|consen 286 IGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQ 365 (673)
T ss_pred eeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhh
Confidence 999999999999999999998876541 112445789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCC-------------------
Q 012059 193 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL------------------- 253 (472)
Q Consensus 193 ~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~------------------- 253 (472)
-..+..+|+|+|+||++|++.+.+..+.+..+.+||+|||++|.+++|.+++..++.+++.
T Consensus 366 ~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 366 GFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 8899999999999999999999999999999999999999999999999999999988721
Q ss_pred -------CceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEE
Q 012059 254 -------PQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVY 326 (472)
Q Consensus 254 -------~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf 326 (472)
.|.++||||+|+.+..+++.++.+|+.+..+....+.+.++|.+..+..+.+...|..++.+. ..+++|||
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIF 523 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIF 523 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEE
Confidence 489999999999999999999999999999999999999999999999999999999999765 56789999
Q ss_pred ECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHH
Q 012059 327 VGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYV 406 (472)
Q Consensus 327 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~ 406 (472)
+|+++.|+.+++.|. +.|+.+..+||+-++++|+.+++.|++|..+|||||+++++|||+|++++|||||+++++++|.
T Consensus 524 vN~kk~~d~lAk~Le-K~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYt 602 (673)
T KOG0333|consen 524 VNTKKGADALAKILE-KAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYT 602 (673)
T ss_pred EechhhHHHHHHHHh-hccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHH
Confidence 999999999999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHc-CCCCCHHHHhchhh
Q 012059 407 HQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS-GAGIPRELINSRYT 457 (472)
Q Consensus 407 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~l~~~~~~ 457 (472)
|||||+||+|+.|.+++|+++.|...+..|.+.+.++ ....|.++..+..+
T Consensus 603 HRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 603 HRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred HHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 9999999999999999999999999999999988754 56788888877544
No 6
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-72 Score=514.19 Aligned_cols=437 Identities=31% Similarity=0.518 Sum_probs=405.6
Q ss_pred CCCCCCCCC--CCCCCCCccccCccccCCCcccccCCCHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHH
Q 012059 14 RGMRVVPPP--PPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEA 91 (472)
Q Consensus 14 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~ 91 (472)
+.+++.++- ....++|+.++||.++.+ ++.++..+...++..+++.+.|...|+|+.+|+++++++.+..++.+
T Consensus 165 r~idpl~~idhs~i~y~p~~kdfy~e~es----I~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk 240 (731)
T KOG0339|consen 165 RQIDPLPPIDHSEIDYEPFNKDFYEEHES----IEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRK 240 (731)
T ss_pred ccCCCCCCcchhhccccccccccccChhh----hhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhh
Confidence 344444333 556899999999988877 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
..|.+|||+|.+++|..++|++++-.|-||||||.+|+.|++.+++.+.. ...+.+|..||+|||++||.|++.++++
T Consensus 241 ~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e--L~~g~gPi~vilvPTrela~Qi~~eaKk 318 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE--LKPGEGPIGVILVPTRELASQIFSEAKK 318 (731)
T ss_pred hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh--hcCCCCCeEEEEeccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987543 2347799999999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
|++..+++++++|||.+.++|...+..++.|+||||++|++++..+..++.+++|+|+||+++|++++|..++..|..++
T Consensus 319 f~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi 398 (731)
T KOG0339|consen 319 FGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI 398 (731)
T ss_pred hhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchh-HHHHHHHHHHhcCCCCCCEEEEECC
Q 012059 252 -SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGS 329 (472)
Q Consensus 252 -~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~lIf~~~ 329 (472)
+..|+++||||++..++.+++.++.+++.+..+........+.|.+..+.+.. |...|+..|.... ..+++|||+.-
T Consensus 399 rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~-S~gkvlifVTK 477 (731)
T KOG0339|consen 399 RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS-SEGKVLIFVTK 477 (731)
T ss_pred CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhc-cCCcEEEEEec
Confidence 88999999999999999999999999999988888888888999888877764 4455555554443 35699999999
Q ss_pred chhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhh
Q 012059 330 RLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQI 409 (472)
Q Consensus 330 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~ 409 (472)
+..++.++..|+ ..++.+..+||+|.+.+|.+++..|+.+...|||+|+++++|+|||.++.||+||+-.+++.|.||+
T Consensus 478 k~~~e~i~a~Lk-lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththri 556 (731)
T KOG0339|consen 478 KADAEEIAANLK-LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRI 556 (731)
T ss_pred cCCHHHHHHHhc-cccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHh
Confidence 999999999998 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhhc
Q 012059 410 GRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 458 (472)
Q Consensus 410 GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 458 (472)
||+||.|.+|.+++++++.|..+...|++-|+.++|.||++|.+++...
T Consensus 557 grtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~ 605 (731)
T KOG0339|consen 557 GRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKS 605 (731)
T ss_pred hhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999997654
No 7
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-70 Score=490.01 Aligned_cols=370 Identities=29% Similarity=0.504 Sum_probs=349.4
Q ss_pred CCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCC
Q 012059 70 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 149 (472)
Q Consensus 70 p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 149 (472)
-....+|.++++.++++++++..|+..|+++|+++||.++.|+|+|..|.||||||.+|++|++++|+.. ...
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-------p~~ 129 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-------PKL 129 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC-------CCC
Confidence 3455789999999999999999999999999999999999999999999999999999999999999872 345
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHH-cCCCCCCCeeEEE
Q 012059 150 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM-KHDIELDDIRMFV 228 (472)
Q Consensus 150 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~-~~~~~~~~~~~iV 228 (472)
++++|++|||+||.|+.+.++.++...++++.++.||.....+...+.+.++|+|+||++|.+++. .+.+++..++++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999998 5788899999999
Q ss_pred EeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHH
Q 012059 229 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 307 (472)
Q Consensus 229 vDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
+||||+++++.|...+..|++.+ ...|.+++|||++..+.++....+.+|..+.+.......+.+.|.+.+++...|..
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~ 289 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT 289 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch
Confidence 99999999999999999999999 67899999999999999999999999999999888888888999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 012059 308 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 387 (472)
Q Consensus 308 ~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 387 (472)
.|+.++.+... ..+||||++..++..++-.|+ ..|+.+..+||+|+++.|.-.++.|++|.++||+|||+++||+|+
T Consensus 290 yLV~ll~e~~g--~s~iVF~~t~~tt~~la~~L~-~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi 366 (476)
T KOG0330|consen 290 YLVYLLNELAG--NSVIVFCNTCNTTRFLALLLR-NLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI 366 (476)
T ss_pred hHHHHHHhhcC--CcEEEEEeccchHHHHHHHHH-hcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC
Confidence 99999986544 689999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCC--CCH
Q 012059 388 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAG--IPR 449 (472)
Q Consensus 388 ~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~ 449 (472)
|.+++|||||.|.+..+|+||+||++|+|.+|.++.|++..|.+.+.++...+.+.... ++.
T Consensus 367 p~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 367 PHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred CCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999999999999999999999999999999999999999999888765 454
No 8
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.7e-70 Score=485.20 Aligned_cols=407 Identities=31% Similarity=0.562 Sum_probs=373.8
Q ss_pred ccCCCHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCc
Q 012059 45 FQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGK 124 (472)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGK 124 (472)
+.+++.++.+..|+.+.+.+.|+.+|+|+.+|.++.+|..+++.|++.|+..|||+|.+.+|.+++|+|+|-.|-|||||
T Consensus 141 ir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGK 220 (610)
T KOG0341|consen 141 IRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 220 (610)
T ss_pred HHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCc
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhhhcc-cCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC------CCeEEEEEcCcchHHHHHHHh
Q 012059 125 TASFLVPVISQCANIRLHH-SQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL------PFKTALVVGGDAMARQVYRIQ 197 (472)
Q Consensus 125 T~~~~l~~~~~l~~~~~~~-~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~ 197 (472)
|++|.+|++...+++.... ..++.+|..||+||+|+||.|.++.+..+...+ .+++..+.||....++...++
T Consensus 221 TlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~ 300 (610)
T KOG0341|consen 221 TLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR 300 (610)
T ss_pred eEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh
Confidence 9999999998877653322 345789999999999999999999888775432 278889999999999999999
Q ss_pred cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcC
Q 012059 198 QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISK 276 (472)
Q Consensus 198 ~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~ 276 (472)
.+.+|+|+||++|.+++.....++.-+.|+.+||||+|.+++|...+..++..+ ..+|+++||||+|..++.+++..+.
T Consensus 301 ~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALV 380 (610)
T KOG0341|consen 301 RGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALV 380 (610)
T ss_pred cCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999 6789999999999999999999999
Q ss_pred CcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCC
Q 012059 277 DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP 356 (472)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 356 (472)
.|+.++++......-++.|...++....|...+++-| ....+|+||||..+..++.+.++|. ..|..+..+||+-+
T Consensus 381 KPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCL---QKT~PpVLIFaEkK~DVD~IhEYLL-lKGVEavaIHGGKD 456 (610)
T KOG0341|consen 381 KPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECL---QKTSPPVLIFAEKKADVDDIHEYLL-LKGVEAVAIHGGKD 456 (610)
T ss_pred cceEEecccccccchhHHHHHHHHHhhhhhhhHHHHh---ccCCCceEEEeccccChHHHHHHHH-HccceeEEeecCcc
Confidence 9999999998887777777666666666665555555 4456799999999999999999998 78999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC-ChHHHHH
Q 012059 357 MKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQE 435 (472)
Q Consensus 357 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~ 435 (472)
+++|...++.|+.|+.+|||||++++.|+|+|++.+|||||+|..++.|+||+||+||.|+.|.+.+|++.. +...+.+
T Consensus 457 QedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlD 536 (610)
T KOG0341|consen 457 QEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLD 536 (610)
T ss_pred hhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 5678889
Q ss_pred HHHHHHHcCCCCCHHHHhch
Q 012059 436 LVDILKSSGAGIPRELINSR 455 (472)
Q Consensus 436 l~~~l~~~~~~~~~~l~~~~ 455 (472)
+...|.+.+|++|+.|..+.
T Consensus 537 LK~LL~EakQ~vP~~L~~L~ 556 (610)
T KOG0341|consen 537 LKHLLQEAKQEVPPVLAELA 556 (610)
T ss_pred HHHHHHHhhccCCHHHHHhC
Confidence 99999999999999998764
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-68 Score=496.53 Aligned_cols=395 Identities=36% Similarity=0.615 Sum_probs=368.9
Q ss_pred cCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhh
Q 012059 60 LEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANI 139 (472)
Q Consensus 60 ~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~ 139 (472)
..+.+.|.++|.++..|.+-.+.+.+..+++..||..|+|+|+.+||.+..|++++++|+||||||.+|++|++.+++..
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 34567899999999999988999999999999999999999999999999999999999999999999999999999886
Q ss_pred hhcccCCC---CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc
Q 012059 140 RLHHSQNQ---KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK 216 (472)
Q Consensus 140 ~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~ 216 (472)
........ ..|.+||++|||+||.|++++++++.....+++...|||.+...+...+..+|+|+|+||++|.++++.
T Consensus 140 ~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~ 219 (482)
T KOG0335|consen 140 GPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER 219 (482)
T ss_pred CcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc
Confidence 54332222 248999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCCCCCCeeEEEEeccchhhh-cCcHHHHHHHHHhC-----CCCceEeecccccHHHHHHHhhhcCC-cEEEEeCCCCCC
Q 012059 217 HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-----SLPQILMYSATISQEVEKMSSSISKD-IVVVSVGKPNMP 289 (472)
Q Consensus 217 ~~~~~~~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-----~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 289 (472)
..+.+++++++|+||||+|++ ++|.+++..++... ...|.++||||+|..+..++..++.+ ++.+.++.....
T Consensus 220 g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~ 299 (482)
T KOG0335|consen 220 GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST 299 (482)
T ss_pred ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc
Confidence 999999999999999999999 99999999999887 46899999999999999999999887 889999988889
Q ss_pred ccceeEEEEEecchhHHHHHHHHHHhcCCC--CC-----CEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHH
Q 012059 290 NKAVKQLAIWVESNKKKQKLFDILMSKQHF--TP-----PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 362 (472)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~-----~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~ 362 (472)
..++.|...++....+...|++++...... .+ +++|||.++..+..++..|. ..++++..+||+.++.+|++
T Consensus 300 ~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~-~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS-SNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh-cCCCCceeecchhhhhHHHH
Confidence 999999999999999999999999865421 23 79999999999999999998 88999999999999999999
Q ss_pred HHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHH
Q 012059 363 IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 442 (472)
Q Consensus 363 ~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 442 (472)
.++.|++|++.+||||++++||+|+|++++||+||+|.+..+|+|||||+||.|+.|.++.|++..+....+.|.++|.+
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhch
Q 012059 443 SGAGIPRELINSR 455 (472)
Q Consensus 443 ~~~~~~~~l~~~~ 455 (472)
+++++|+||.++.
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999999843
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-67 Score=524.23 Aligned_cols=444 Identities=31% Similarity=0.545 Sum_probs=410.8
Q ss_pred CCCCCCCCCCCCCccccCccccCCCcccccCCCHHHHHHHHHhcC-ceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCC
Q 012059 17 RVVPPPPPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLE-INVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYD 95 (472)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~ 95 (472)
..+++ ....++||+.+||.+..+ ++.|+..+++.++..+. +.+.|...|.|+.+|.+++++..++..++++||.
T Consensus 312 ~~~~~-S~~~~epFRknfy~e~~d----i~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~ 386 (997)
T KOG0334|consen 312 IQVDH-SKISYEPFRKNFYIEVRD----IKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYE 386 (997)
T ss_pred eeccc-ccccchhhhhcccccchh----HHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCC
Confidence 34455 667899999999999887 99999999999999988 9999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|+|+|.+|||++++|+++|.+|.||||||++|++|++.++..++.. +.+.||.+||++||++|+.|++++++.|...
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~--~~gdGPi~li~aPtrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL--EEGDGPIALILAPTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh--hhCCCceEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888765443 3456999999999999999999999999999
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCC---CCCeeEEEEeccchhhhcCcHHHHHHHHHhC-
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIE---LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI- 251 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~---~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~- 251 (472)
+++++++++||....+++.++..++.|+||||+++++++..+... +.++.++|+||||+|++++|.+++..|+..+
T Consensus 465 l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR 544 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc
Confidence 999999999999999999999999999999999999998865544 4555699999999999999999999999999
Q ss_pred CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEec-chhHHHHHHHHHHhcCCCCCCEEEEECCc
Q 012059 252 SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE-SNKKKQKLFDILMSKQHFTPPAVVYVGSR 330 (472)
Q Consensus 252 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~lIf~~~~ 330 (472)
+..|++++|||+|..+..++...+..|+.+.++........+.+.+..+. ...|...|+.+|..... .+++||||.+.
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~q 623 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQ 623 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCc
Confidence 88999999999999999999999999999999988888888999998888 88999999999988776 67999999999
Q ss_pred hhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhc
Q 012059 331 LGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIG 410 (472)
Q Consensus 331 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~G 410 (472)
..|+.+.+.|. ..|+.+..+||+.++.+|..+++.|++|.+.+||||+.+++|+|++.+..|||||+|..+++|+||+|
T Consensus 624 e~~d~l~~~L~-~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~g 702 (997)
T KOG0334|consen 624 EKADALLRDLQ-KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVG 702 (997)
T ss_pred hHHHHHHHHHH-hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhc
Confidence 99999999998 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhhc------------CC-cCCCCCCCC
Q 012059 411 RASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV------------GS-FSSGKGFKK 469 (472)
Q Consensus 411 R~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~------------~~-~~~~~~~~~ 469 (472)
|+||+|++|.|++|+.+++......|.+.|+.+++.+|..+..++.+. ++ +.+|+|+|-
T Consensus 703 RTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~ 774 (997)
T KOG0334|consen 703 RTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKF 774 (997)
T ss_pred ccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhhcccccccccCcccCCcccc
Confidence 999999999999999999999999999999999999999888774332 33 377788764
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-65 Score=510.11 Aligned_cols=371 Identities=34% Similarity=0.611 Sum_probs=337.5
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
.+|+++++++.+++++.+.||..|+|+|.++||.++.|+|+++.|+||||||++|++|+++++... ......+ +|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~----~~~~~~~-aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS----VERKYVS-AL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc----cccCCCc-eE
Confidence 679999999999999999999999999999999999999999999999999999999999996532 0111112 99
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
|++|||+||.|+++.+..++... ++++.+++||.+...+...+..+++|+|+||+++++++.+..+++..+.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999988 79999999999999999889889999999999999999999999999999999999
Q ss_pred chhhhcCcHHHHHHHHHhCC-CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCC--CccceeEEEEEecchh-HHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM--PNKAVKQLAIWVESNK-KKQK 308 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 308 (472)
|+|++++|.+++..++..++ ..|+++||||+++.+..+++.++.+|..+.+..... ....+.|.+..+.... +...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 99999999999999999995 599999999999999999999999998888875544 7788999999888776 7777
Q ss_pred HHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 012059 309 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 388 (472)
Q Consensus 309 l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 388 (472)
|..++..... .++||||+++..++.++..|. ..|+.+..+||++++++|.++++.|++|+.+||||||+++||||+|
T Consensus 264 L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~-~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 264 LLKLLKDEDE--GRVIVFVRTKRLVEELAESLR-KRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHH-HCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 7777765433 369999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC-ChHHHHHHHHHHHHc---CCCCCHHHH
Q 012059 389 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSS---GAGIPRELI 452 (472)
Q Consensus 389 ~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~~~~~l~ 452 (472)
++++|||||.|.+++.|+||+||+||+|..|.+++|+.+. |...+..+.+.+... ...+|....
T Consensus 341 ~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred ccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 9999999999999999999999999999999999999986 888999999888766 345554433
No 12
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-65 Score=439.26 Aligned_cols=374 Identities=29% Similarity=0.561 Sum_probs=348.5
Q ss_pred CCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCC
Q 012059 70 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 149 (472)
Q Consensus 70 p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 149 (472)
-.+..+|++++|.+++++.+-..||.+|..+|+.|++.+++|+|++++|..|+|||.+|.+.+++.+.- ....
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-------~~r~ 95 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-------SVRE 95 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc-------ccce
Confidence 446678999999999999999999999999999999999999999999999999999998888765432 1234
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEE
Q 012059 150 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 229 (472)
Q Consensus 150 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVv 229 (472)
..+||+.|||+||.|+.+.+..++...++.+..+.||.+..+.++.+..|.+++.+||+++.+++.+..+.-..++++|+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchh-HHH
Q 012059 230 DEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KKQ 307 (472)
Q Consensus 230 DE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~ 307 (472)
||||.|++.+|..++..+++.+ +..|++++|||+|.++.++.+.++.+|+.+.+.....+.+.+.+++..++.++ |.+
T Consensus 176 DEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 176 DEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred ccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHh
Confidence 9999999999999999999999 48999999999999999999999999999999999999999999999888776 888
Q ss_pred HHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 012059 308 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 387 (472)
Q Consensus 308 ~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 387 (472)
.|.++.....- ...+|||+++..++.|.+.++ ..++.+..+||+|++++|+++++.|++|+.+|||+|++.+||+|+
T Consensus 256 tLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~-~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 256 TLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMR-EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred HHHHHhhhheh--heEEEEecccchhhHHHHHHH-hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 88777654332 368999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHh
Q 012059 388 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELIN 453 (472)
Q Consensus 388 ~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 453 (472)
|.+++|||||+|.+.+.|+||+||+||.|++|.++-|+..+|.+.++.+.+++.-...++|-++.+
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999888876543
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-64 Score=495.63 Aligned_cols=369 Identities=26% Similarity=0.475 Sum_probs=328.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
..+|++++|++.+++.+...||..|+|+|.++||.+++|+|++++||||||||++|++|++..+............++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36799999999999999999999999999999999999999999999999999999999999887643322222346889
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
||++||++||.|+++.+..+....++++..++||.....+...+..+++|+|+||+++.+++......+.+++++|+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999998899999999999888888888888999999999999999988888999999999999
Q ss_pred chhhhcCcHHHHHHHHHhCC---CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 309 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (472)
|++++++|...+..++..++ ..+.+++|||++..+..+....+.++..+...........+.+...+.....+...+
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHH
Confidence 99999999999999999885 346789999999999998888888888777766555555666666666666677777
Q ss_pred HHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 012059 310 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 389 (472)
Q Consensus 310 ~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 389 (472)
..++... ...++||||+++..++.++..|. ..++.+..+||++++++|..+++.|++|+++|||||+++++|||+|+
T Consensus 247 ~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~-~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 247 QTLIEEE--WPDRAIIFANTKHRCEEIWGHLA-ADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHhc--CCCeEEEEECCHHHHHHHHHHHH-hCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 7776543 34689999999999999999998 77999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcC
Q 012059 390 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 444 (472)
Q Consensus 390 ~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 444 (472)
+++||+||+|.+..+|+||+||+||.|+.|.+++|+.+.+...+..+.+.+....
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999888888877776553
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6e-63 Score=489.06 Aligned_cols=366 Identities=31% Similarity=0.586 Sum_probs=325.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 154 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~li 154 (472)
+|++++|++.+++.|.+.||..|+++|.++|+.++.|+|++++||||||||++|++|++..+...... .......++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~-~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH-AKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-cccCCCceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999988653211 11123458999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 012059 155 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 234 (472)
Q Consensus 155 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~ 234 (472)
|+||++||.|+.+.+..+....++.+..++||.....+...+..+++|+|+||++|.+++......++++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 99999999999999999998889999999999998888888888899999999999999988888899999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHH
Q 012059 235 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDIL 313 (472)
Q Consensus 235 ~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 313 (472)
+++++|...+..++..+ ...|++++|||+++.+..+...++.++..+...........+.+.+..+....+...+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999888 55789999999999999999999988887776655555556777776666665555555554
Q ss_pred HhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEE
Q 012059 314 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQV 393 (472)
Q Consensus 314 ~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V 393 (472)
.. ....++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 241 ~~--~~~~~~lVF~~t~~~~~~l~~~L~-~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 241 GK--GNWQQVLVFTRTKHGANHLAEQLN-KDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred Hc--CCCCcEEEEcCcHHHHHHHHHHHH-HCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 33 234589999999999999999998 779999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcC
Q 012059 394 IIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 444 (472)
Q Consensus 394 I~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 444 (472)
|+|++|.+..+|+||+||+||.|..|.+++|+...|...++.+.+.+....
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999998888776543
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.9e-62 Score=491.21 Aligned_cols=368 Identities=31% Similarity=0.525 Sum_probs=324.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
..+|++++|++.+++.|.+.||..|+|+|.++||.+++|+|++++||||||||++|++|+++++.............+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34799999999999999999999999999999999999999999999999999999999999886532111112235789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC-CCCCCCeeEEEEec
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDE 231 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~-~~~~~~~~~iVvDE 231 (472)
|||+||++|+.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++... .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999988887778888999999999999998765 45688899999999
Q ss_pred cchhhhcCcHHHHHHHHHhCC---CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHH
Q 012059 232 VDCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQK 308 (472)
Q Consensus 232 ~h~~~~~~~~~~~~~i~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (472)
||++++++|...+..++..++ ..|+++||||++..+..+...++.++..+...........+.+.+.......+...
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence 999999999999999999885 57999999999999999988888887666655554455556677666666667777
Q ss_pred HHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 012059 309 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 388 (472)
Q Consensus 309 l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 388 (472)
+..++.. ..+.++||||+++..++.+++.|. ..++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 248 L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~-~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 248 LLGLLSR--SEGARTMVFVNTKAFVERVARTLE-RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHH-HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 7777654 235689999999999999999998 7799999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHc
Q 012059 389 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 443 (472)
Q Consensus 389 ~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 443 (472)
++++||+||.|.+..+|+||+||+||.|..|.+++|+++.+...+..+.+.+...
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999888888887776554
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-63 Score=458.68 Aligned_cols=361 Identities=32% Similarity=0.530 Sum_probs=325.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
..+|.+++|+..+++++..+||..|+|+|..+||..+-|+|++.+|.||||||.+|.+|++.+++.... +-...+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk----~~~~TRV 255 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK----KVAATRV 255 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc----cCcceeE
Confidence 458999999999999999999999999999999999999999999999999999999999999987322 2345789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc-CCCCCCCeeEEEEec
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVLDE 231 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~-~~~~~~~~~~iVvDE 231 (472)
|||+|||+|+.|++...+.++....+.+..+.||.+...|-..+++.+||+|+|||+|++++.+ ..+++.++.++|+||
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999999976 567899999999999
Q ss_pred cchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecc--h-hHHH
Q 012059 232 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES--N-KKKQ 307 (472)
Q Consensus 232 ~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 307 (472)
||+|++.+|..++..|+..+ +++|.++||||+.+.+.+++..-+..|+.+.+.........+.|.++.+.. . .+..
T Consensus 336 ADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH
Confidence 99999999999999999999 789999999999999999999999999999998876666666665554332 2 2223
Q ss_pred HHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 012059 308 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 387 (472)
Q Consensus 308 ~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 387 (472)
.+..++... ....++||+.++..|..+.-+|- ..|+++.-+||.+++.+|.+.++.|++++++|||||++++||+||
T Consensus 416 ~l~~l~~rt--f~~~~ivFv~tKk~AHRl~IllG-Llgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI 492 (691)
T KOG0338|consen 416 MLASLITRT--FQDRTIVFVRTKKQAHRLRILLG-LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI 492 (691)
T ss_pred HHHHHHHHh--cccceEEEEehHHHHHHHHHHHH-HhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc
Confidence 333444332 24579999999999999998887 889999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHH
Q 012059 388 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDIL 440 (472)
Q Consensus 388 ~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 440 (472)
+++.+||||++|.++..|+||+||+.|+|+.|.+++|+.++|.+.++.+.+--
T Consensus 493 ~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 493 EGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred cceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999988888763
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.9e-61 Score=479.40 Aligned_cols=358 Identities=31% Similarity=0.511 Sum_probs=323.7
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
.+|++++|++.+.+.+...||..|+|+|.++|+.++.|+|++++||||||||++|++|++.++.. .....++|
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------~~~~~~~l 76 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------KRFRVQAL 76 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-------ccCCceEE
Confidence 57999999999999999999999999999999999999999999999999999999999998743 12356799
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
|++||++||.|+.+.++.+.... ++++..++||.+...+...+..+++|+|+||++|.+++.+....+.++++||+|||
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 99999999999999999987654 68899999999998888888889999999999999999988888999999999999
Q ss_pred chhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 311 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (472)
|++++++|...+..++..+ +..|++++|||+++.+..+...++.++..+....... ...+.+.+..+....+...+..
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD-LPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC-CCCeeEEEEEeCcHHHHHHHHH
Confidence 9999999999999999988 5678999999999999999999999988887765443 3447777777777777777777
Q ss_pred HHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCc
Q 012059 312 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 391 (472)
Q Consensus 312 ~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~ 391 (472)
++... ...++||||+++..++.++..|. ..++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|+++
T Consensus 236 ll~~~--~~~~~lVF~~t~~~~~~l~~~L~-~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~ 312 (460)
T PRK11776 236 LLLHH--QPESCVVFCNTKKECQEVADALN-AQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE 312 (460)
T ss_pred HHHhc--CCCceEEEECCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC
Confidence 77543 34579999999999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHH
Q 012059 392 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 442 (472)
Q Consensus 392 ~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 442 (472)
+||+||.|.+...|+||+||+||.|+.|.+++|+.+.|...+..+.+.+..
T Consensus 313 ~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 313 AVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred eEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999998888887776654
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4e-61 Score=486.18 Aligned_cols=361 Identities=28% Similarity=0.505 Sum_probs=324.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
..+|.+++|++.++++|.++||.+|+|+|.++|+.++.++++++.||||||||++|++|++..+.. ...++++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------~~~~~~~ 77 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------ELKAPQI 77 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-------ccCCCeE
Confidence 346999999999999999999999999999999999999999999999999999999999987643 1245789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEec
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 231 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE 231 (472)
||++||++||.|+++.+..+.... ++.++.++||.....+...+..+++|+|+||+++.+++.+..+.+.++++|||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 999999999999999999987665 6889999999998888888888999999999999999998888899999999999
Q ss_pred cchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHH
Q 012059 232 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 310 (472)
Q Consensus 232 ~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (472)
||++++++|...+..++..+ ...|+++||||+|..+..+.+.++.++..+.+.........+.+.+..+....+...+.
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHH
Confidence 99999999999999999998 56889999999999999999999999888777666555566777777777767777888
Q ss_pred HHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 012059 311 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 390 (472)
Q Consensus 311 ~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 390 (472)
.++... ...++||||+++..++.++..|. ..++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++
T Consensus 238 ~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~-~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V 314 (629)
T PRK11634 238 RFLEAE--DFDAAIIFVRTKNATLEVAEALE-RNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERI 314 (629)
T ss_pred HHHHhc--CCCCEEEEeccHHHHHHHHHHHH-hCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccC
Confidence 877543 33579999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHc
Q 012059 391 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 443 (472)
Q Consensus 391 ~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 443 (472)
++||+||.|.+.+.|+||+||+||.|+.|.+++|+.+.+...++.+.+.++..
T Consensus 315 ~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~ 367 (629)
T PRK11634 315 SLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 (629)
T ss_pred CEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998877777766654433
No 19
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.3e-61 Score=444.77 Aligned_cols=360 Identities=27% Similarity=0.488 Sum_probs=327.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
...|++..|++...+++..+||..+|++|...++.++.|+|+++.|-||+|||++|++|+++.+...+... ..+-.+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~---r~~~~v 157 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP---RNGTGV 157 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC---CCCeeE
Confidence 45577889999999999999999999999999999999999999999999999999999999998765543 356789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC-CCCCCCeeEEEEe
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLD 230 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~-~~~~~~~~~iVvD 230 (472)
||+||||+||.|++.+++++.+.. ++.+..+.||.........+.++++|+|+|||+|.+++++. .+.+.+++++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999999998887 78999999999999988999999999999999999999874 4456778899999
Q ss_pred ccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCC-cEEEEeCCC--CCCccceeEEEEEecchhHH
Q 012059 231 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKD-IVVVSVGKP--NMPNKAVKQLAIWVESNKKK 306 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 306 (472)
|||++++++|+..+..|+..+ ...|.++||||.+.+++++++..+.. +..+..... ..+.+.+.|.+...+...+.
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999 67899999999999999999877664 777776554 44567788888888888888
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 386 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 386 (472)
..++.+|.+.... .+++|||+|-..+..+++.|. ...+++..+||+.++..|..+...|++.+..||||||+++||+|
T Consensus 318 ~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~-~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 318 SLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLN-YIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred HHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHh-hcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 8888888776543 789999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHH
Q 012059 387 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 387 i~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 437 (472)
+|++++||.||+|.++++|+||+||+||.|..|.+++++.+++...++.+.
T Consensus 396 ~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 396 IPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987776665
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.8e-60 Score=468.69 Aligned_cols=363 Identities=31% Similarity=0.512 Sum_probs=321.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 154 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~li 154 (472)
+|+++++++.+++.+.+.||..|+++|.++++.++.|+|++++||||+|||++|++|+++++..... ....++++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~---~~~~~~~~li 78 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR---RKSGPPRILI 78 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCceEEE
Confidence 6899999999999999999999999999999999999999999999999999999999998875321 1234578999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 012059 155 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 234 (472)
Q Consensus 155 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~ 234 (472)
++||++||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++....+.+.++++||+||||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 99999999999999999999999999999999988888777778899999999999999998888899999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CCCceEeecccccH-HHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecch-hHHHHHHH
Q 012059 235 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQ-EVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-KKKQKLFD 311 (472)
Q Consensus 235 ~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 311 (472)
+++++|...+..+...+ ...|+++||||++. .+..+...++.++..+...........+.+.+...... .+...+..
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999988877 55789999999974 57888888888888887766655556667766666543 34444444
Q ss_pred HHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCc
Q 012059 312 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 391 (472)
Q Consensus 312 ~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~ 391 (472)
++.. ....++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 239 l~~~--~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 239 LLKQ--PEVTRSIVFVRTRERVHELAGWLR-KAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHhc--CCCCeEEEEeCChHHHHHHHHHHH-hCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 4432 234689999999999999999998 6789999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHc
Q 012059 392 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 443 (472)
Q Consensus 392 ~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 443 (472)
+||+||+|.+...|+||+||+||.|..|.+++|+...|...+..+.+++...
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998888888776653
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-60 Score=435.86 Aligned_cols=363 Identities=30% Similarity=0.496 Sum_probs=319.0
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 74 LSFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 74 ~~~~~~~--l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
.+|++++ |++++++.+...||..+||+|..+||.+++++|+++.|+||||||++|++|++..+........ ...-.
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~--~~~vg 81 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP--PGQVG 81 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC--cccee
Confidence 3566654 6699999999999999999999999999999999999999999999999999998855322211 11346
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcC-CCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcCC--CCCCCeeEE
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGKG-LPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHD--IELDDIRMF 227 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~~--~~~~~~~~i 227 (472)
+|||+|||+||.|+.+.+..|... .++.+.+++||....+.+..+. .+++|+|+|||+|.+++.+.. +++.++.++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 999999999999999999988776 5689999999999988888776 568899999999999998844 445599999
Q ss_pred EEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCC--CccceeEEEEEecchh
Q 012059 228 VLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM--PNKAVKQLAIWVESNK 304 (472)
Q Consensus 228 VvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 304 (472)
|+||||++++++|...+..|+..+ ..+++=+||||....+.++.+..+.+++.+.+..... .+..+...+..+....
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e 241 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE 241 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH
Confidence 999999999999999999999999 5567779999999999999999999999999887754 6666888888999999
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012059 305 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 383 (472)
Q Consensus 305 ~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 383 (472)
|...++.+|.. ....++|||.++-..++.....+... .+..+..+||.|.+..|..+++.|++..-.+|+|||+++|
T Consensus 242 K~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaAR 319 (567)
T KOG0345|consen 242 KLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAAR 319 (567)
T ss_pred HHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhc
Confidence 99999999976 34568999999999999999988754 4678999999999999999999999988899999999999
Q ss_pred cCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcC
Q 012059 384 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 444 (472)
Q Consensus 384 Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 444 (472)
|||||++++||+||+|.++..|+||+||++|.|+.|.+++|+.+.+.. .+++|+..+
T Consensus 320 GlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a----YveFl~i~~ 376 (567)
T KOG0345|consen 320 GLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA----YVEFLRIKG 376 (567)
T ss_pred cCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH----HHHHHHhcC
Confidence 999999999999999999999999999999999999999999997653 344444443
No 22
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-61 Score=425.09 Aligned_cols=366 Identities=30% Similarity=0.462 Sum_probs=330.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
...|+.+||++++.+.++.+|+..|||+|..|||.++.|+|+|-+|.||||||.+|.+|+++++.+. ..+..+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed-------P~giFa 78 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED-------PYGIFA 78 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC-------CCcceE
Confidence 4579999999999999999999999999999999999999999999999999999999999998762 457789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC----CCCCCeeEEE
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD----IELDDIRMFV 228 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~----~~~~~~~~iV 228 (472)
+|++|||+||-|+.+.+..+++..++++.+++||.+.-.+...+...+|++|+|||++.+++..+. ..+++++++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999998762 3478899999
Q ss_pred EeccchhhhcCcHHHHHHHHHhCCCC-ceEeecccccHHHHHHHhhhcCC--cEEEEeCCCCCCccceeEEEEEecchhH
Q 012059 229 LDEVDCMLQRGFRDQVMQIFRAISLP-QILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPNKAVKQLAIWVESNKK 305 (472)
Q Consensus 229 vDE~h~~~~~~~~~~~~~i~~~~~~~-~~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 305 (472)
+||||++++..|...+..++..++.+ |.++||||+.+.+..+...-... .............+.+.+.+..++...+
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999999665 99999999999887765543333 3444444556666778888899999888
Q ss_pred HHHHHHHHHhcCC-CCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 012059 306 KQKLFDILMSKQH-FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 384 (472)
Q Consensus 306 ~~~l~~~l~~~~~-~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 384 (472)
...++.+|....+ .++.++||+++..+|+.++..|+ ..++.+..+|+.|++++|...+..|+++..+||||||+++||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~-~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLK-NLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRG 317 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHh-hhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcC
Confidence 8889988887665 56689999999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCC
Q 012059 385 VELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAG 446 (472)
Q Consensus 385 idi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 446 (472)
+|||.++.|||||.|.++.+|+||+||+.|+|+.|.++.++.+.|.+.+..+.+-......+
T Consensus 318 LDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e 379 (442)
T KOG0340|consen 318 LDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTE 379 (442)
T ss_pred CCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999888888776655433
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-59 Score=467.38 Aligned_cols=379 Identities=29% Similarity=0.511 Sum_probs=329.5
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
....|.+++|++.+.+.|.+.||..|+++|.++|+.+++|+|+++.+|||||||++|++|++..+.............++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 34578899999999999999999999999999999999999999999999999999999999988763322111123578
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEe
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 230 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvD 230 (472)
+|||+||++|+.|+++.++.+....++.+..++||.....+...+. ..++|+|+||++|.+++......+.++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999888899999999988777766665 458999999999999988888889999999999
Q ss_pred ccchhhhcCcHHHHHHHHHhCC---CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHH
Q 012059 231 EVDCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 307 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
|+|++.+++|...+..++..++ ..|++++|||++..+..+++.+..++..+...........+.+.+..+....+..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 9999999999999999988873 5689999999999999999999888887776665555555666666666666766
Q ss_pred HHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 012059 308 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 387 (472)
Q Consensus 308 ~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 387 (472)
.+..++... ...++||||+++..++.++..|. ..++.+..+||++++++|.++++.|++|+++|||||+++++|||+
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLV-KDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 777766543 34589999999999999999997 778999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcC-CCC-CHHHHh
Q 012059 388 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG-AGI-PRELIN 453 (472)
Q Consensus 388 ~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~-~~~-~~~l~~ 453 (472)
|++++||+|++|.|..+|+||+||+||.|+.|.+++|+.++|...+..+.+++.... -++ |.+++.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 999999999999999999999999999999999999999999888888888876654 243 445544
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-62 Score=427.38 Aligned_cols=372 Identities=30% Similarity=0.506 Sum_probs=344.7
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
..|+++.|..+++..+-+.||.+|+|+|.++||.+++|+|++..|..|+|||-+|++|+++.+.. ....-.++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~-------~~~~IQ~~ 157 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP-------KKNVIQAI 157 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-------cccceeEE
Confidence 57899999999999999999999999999999999999999999999999999999999988643 23456799
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 233 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h 233 (472)
|++|||+||.|....+.++++.+++.+...+||.+..+.+-.+....+++|+||++++++..+....++++.++|+||||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 99999999999999999999999999999999999999888888999999999999999999998899999999999999
Q ss_pred hhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHH
Q 012059 234 CMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDI 312 (472)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (472)
.+++..|...+..++..+ +.+|++++|||+|-.+..+...++.+|..++.-. +.....+.|++.++....|..-|..+
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHH
Confidence 999999999999999999 6789999999999999999999999999887643 45567789999999999888777777
Q ss_pred HHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcE
Q 012059 313 LMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQ 392 (472)
Q Consensus 313 l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~ 392 (472)
+.+..- ...+|||+|...++.+++.+. ..|+.+.++|+.|.++.|.+++..|++|.++.|||||.+.||||++++++
T Consensus 317 fskLqI--NQsIIFCNS~~rVELLAkKIT-elGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNv 393 (459)
T KOG0326|consen 317 FSKLQI--NQSIIFCNSTNRVELLAKKIT-ELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNV 393 (459)
T ss_pred HHHhcc--cceEEEeccchHhHHHHHHHH-hccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeE
Confidence 655432 368999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchh
Q 012059 393 VIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRY 456 (472)
Q Consensus 393 VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 456 (472)
|||||+|++.+.|+||+||+||.|..|.++-+++.+|...+..+.+.|-....++|+.+.+.-|
T Consensus 394 VINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk~ly 457 (459)
T KOG0326|consen 394 VINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDKSLY 457 (459)
T ss_pred EEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999987665544
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-60 Score=435.27 Aligned_cols=365 Identities=29% Similarity=0.492 Sum_probs=314.7
Q ss_pred ccCcccCCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 73 ILSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
...|..+||++.+++.|.. +++..||.+|.++||.++.|+|++|.++||||||++|++|+++.|..+.... .+..|+.
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki-~Rs~G~~ 213 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI-QRSDGPY 213 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc-cccCCce
Confidence 3568889999999999964 6999999999999999999999999999999999999999999998765443 3678999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCCeE-EEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc-CCCCCCCeeEEEE
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGKGLPFKT-ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVL 229 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~-~~~~~~~~~~iVv 229 (472)
+||++|||+||.|+++.+.++.+.+.+.+ ..+.||.....+...+++|++|+|+|||+|++++.+ ..+.++.+.+||+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 99999999999999999999988766443 568899999988999999999999999999999986 5667889999999
Q ss_pred eccchhhhcCcHHHHHHHHHhCC--------------CCceEeecccccHHHHHHHhhhcCCcEEEEeCCC---------
Q 012059 230 DEVDCMLQRGFRDQVMQIFRAIS--------------LPQILMYSATISQEVEKMSSSISKDIVVVSVGKP--------- 286 (472)
Q Consensus 230 DE~h~~~~~~~~~~~~~i~~~~~--------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--------- 286 (472)
||+|++++.||...+..|+..+. ..|.+++|||+.+.+..++..-+.+++.|..+..
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999988761 2578999999999999999999999998872211
Q ss_pred ----------------CCCccceeEEEEEecchhHHHHHHHHHHhcCC--CCCCEEEEECCchhHHHHHHHHhhh-----
Q 012059 287 ----------------NMPNKAVKQLAIWVESNKKKQKLFDILMSKQH--FTPPAVVYVGSRLGADLLSNAISVT----- 343 (472)
Q Consensus 287 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~lIf~~~~~~~~~l~~~L~~~----- 343 (472)
...++.+.+.+..++...+...|..+|.+... ...++|||+++.+.+++-++.|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 12233455666777777777777777766432 3347999999999999988887621
Q ss_pred ----------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHH
Q 012059 344 ----------------TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVH 407 (472)
Q Consensus 344 ----------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Q 407 (472)
.+.++..+||+|++++|..+++.|...+-.||+|||+++||+|+|++.+||.||+|.+.++|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 2356789999999999999999999998889999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEEcCCChHHHHHHHH
Q 012059 408 QIGRASQMGDEGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 408 r~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 438 (472)
|+||+.|.|.+|.+++|+.+.+.++++.+..
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999875544443
No 26
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-59 Score=431.33 Aligned_cols=355 Identities=29% Similarity=0.493 Sum_probs=324.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
.+..|.+++++....+.|+..+|..|+.+|+++||..+.|+|++-.|.||||||++|++|++++|...+|.. ..|--
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~---~DGlG 143 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP---TDGLG 143 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC---CCCce
Confidence 456799999999999999999999999999999999999999999999999999999999999998877654 45677
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC-CCCCCCeeEEEEe
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLD 230 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~-~~~~~~~~~iVvD 230 (472)
+|||.|||+||.|+++.+.++++...+.+..+.||.........+ ++++|+|||||+|+.++..+ .++..++.++|+|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 999999999999999999999999999999999999866654444 56999999999999998764 5677899999999
Q ss_pred ccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCC--CCCccceeEEEEEecchhHHH
Q 012059 231 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESNKKKQ 307 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~ 307 (472)
|||+++++||...+..|+..+ +.+|+++||||....+.++++.-+.+|..+.+... ...+..+.|.+..+....+..
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 999999999999999999999 67899999999999999999999999988877633 567788999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhh-hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 012059 308 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV-TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 386 (472)
Q Consensus 308 ~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 386 (472)
.|+.++..+. ..+.|||++|-+.+..++..+++ ..|..+..+||.|++..|.++...|...+.-||+||++++||+|
T Consensus 303 ~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLD 380 (758)
T KOG0343|consen 303 MLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLD 380 (758)
T ss_pred HHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCC
Confidence 9999997754 46799999999999999998874 35899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHH
Q 012059 387 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL 432 (472)
Q Consensus 387 i~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 432 (472)
+|.+++||.+|+|.++++|+||+||+.|.+..|.+++++.+.+...
T Consensus 381 FpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 381 FPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred CcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 9999999999999999999999999999999999999999998443
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=9.2e-58 Score=448.77 Aligned_cols=368 Identities=30% Similarity=0.560 Sum_probs=321.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
..+|+++++++.+.+++.+.||..|+|+|.++|+.++.|+|+++.||||||||++|++|++..+.. ...+.++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-------~~~~~~~ 99 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-------DLNACQA 99 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------CCCCceE
Confidence 567999999999999999999999999999999999999999999999999999999999987642 1246789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
||++|+++|+.|+.+.+..++...++.+..++|+....++...+..+++|+|+||+++.+++.+....+.++++||+||+
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 99999999999999999999888888888899998888877778888999999999999999888778999999999999
Q ss_pred chhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecch-hHHHHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-KKKQKLF 310 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 310 (472)
|++.+.++...+..++..+ +..|++++|||+++.+..+...++.++..+...........+.+.+...... .+...+.
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHH
Confidence 9999999988888888888 6789999999999999888888888877766555444455556665555443 2444455
Q ss_pred HHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 012059 311 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 390 (472)
Q Consensus 311 ~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 390 (472)
.++... ...++||||+++..++.++..|. ..+..+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 260 ~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~-~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 260 DLYETL--TITQAIIYCNTRRKVDYLTKKMH-ERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHhc--CCCeEEEEecCcHHHHHHHHHHH-HCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 544332 34579999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHH
Q 012059 391 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRE 450 (472)
Q Consensus 391 ~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 450 (472)
++||++|+|.+..+|+||+||+||.|+.|.|++|+.+.+...+..+.+.+.....+.+..
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 999999999999999999999999999999999999999998888888877766665543
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-58 Score=418.47 Aligned_cols=367 Identities=25% Similarity=0.433 Sum_probs=326.7
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
.+|++++|++.+++++.+.||..||-+|+.+||.++.|+|++..|.||||||.+|++|+++.++..+... ....++.++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~-~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-DGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-cccccceeE
Confidence 5899999999999999999999999999999999999999999999999999999999999998865443 456789999
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCC--CeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC-CCCCCeeEEEEe
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGLP--FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD-IELDDIRMFVLD 230 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~-~~~~~~~~iVvD 230 (472)
|++||++||+|++..+.++...++ ++++-+.+..+.......+...++|+|+||++++.++..+. ..+..++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999998876554 66666666666666666777889999999999999998876 567889999999
Q ss_pred ccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCC-ccceeEEEEEecchhHHHH
Q 012059 231 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP-NKAVKQLAIWVESNKKKQK 308 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 308 (472)
|||.+++.||.+.+..+...+ +..|.++||||+.+++..+.+.++.+|+.+.......+ +..+.|+.+.+...++...
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 999999999999999999999 56799999999999999999999999999888776554 4667888888887777766
Q ss_pred HHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec---------
Q 012059 309 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG--------- 379 (472)
Q Consensus 309 l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~--------- 379 (472)
+..++. ..-..++.|||+|+.+.|..+.-.|. ..|++...++|.|+.+.|.-++++|+.|-++++||||
T Consensus 258 lyallK-L~LI~gKsliFVNtIdr~YrLkLfLe-qFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 258 LYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLE-QFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHH-HHHhcCceEEEEechhhhHHHHHHHH-HhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 666554 34456799999999999999998888 8999999999999999999999999999999999999
Q ss_pred --------------------------cccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHH
Q 012059 380 --------------------------ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF 433 (472)
Q Consensus 380 --------------------------~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 433 (472)
-.+||||+.++.+|+|||+|.+...|+||+||++|.+++|.++.|+.+.+..-.
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~ 415 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGK 415 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhh
Confidence 134899999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHc
Q 012059 434 QELVDILKSS 443 (472)
Q Consensus 434 ~~l~~~l~~~ 443 (472)
..+..+++..
T Consensus 416 ~~le~~~~d~ 425 (569)
T KOG0346|consen 416 ESLESILKDE 425 (569)
T ss_pred hHHHHHHhhH
Confidence 7777777664
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=421.86 Aligned_cols=398 Identities=31% Similarity=0.550 Sum_probs=346.7
Q ss_pred HHHHhcCceeeCCCCCCcccCccc----CCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHH
Q 012059 55 SLRKRLEINVKGDAVPAPILSFSS----CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLV 130 (472)
Q Consensus 55 ~~~~~~~~~~~~~~~p~~~~~~~~----~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l 130 (472)
..|+.+.+.+.|..+|.|+.+|.+ +.....+++++...+|..|+|+|.+|+|.++.+++++.++|||||||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 345566788999999999999997 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh--cCCCCeEEEEEcCcchHH-HHHHHhcCCCEEEeCh
Q 012059 131 PVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG--KGLPFKTALVVGGDAMAR-QVYRIQQGVELIVGTP 207 (472)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~I~i~Tp 207 (472)
|++.+|..... .....+-+++|+.|+++||.|++.++.++. ...+++...........+ ........++|+++||
T Consensus 193 Pil~~L~~~~~--~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 193 PILQHLKDLSQ--EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred HHHHHHHHhhc--ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 99999876432 233567899999999999999999999998 555554444333221111 1112224589999999
Q ss_pred HHHHHHHHcCC--CCCCCeeEEEEeccchhhhc-CcHHHHHHHHHhC--CCCceEeecccccHHHHHHHhhhcCCcEEEE
Q 012059 208 GRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVS 282 (472)
Q Consensus 208 ~~l~~~~~~~~--~~~~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~ 282 (472)
-++...+.... ..+..+.++|+||+|++.+. .|..++..+++.+ +...+-+||||++..++++++....++..+.
T Consensus 271 ~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 271 MRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999887764 67889999999999999999 8999999999988 5566679999999999999999999999999
Q ss_pred eCCCCCCccceeEEEEEecch-hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHH
Q 012059 283 VGKPNMPNKAVKQLAIWVESN-KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERR 361 (472)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~ 361 (472)
++..+.....+.|...++.+. .+...+.+++... ..+|+|||+.+.+.|..|...|....++.+.++||..++.+|+
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 988887777788777776654 5667777777543 6679999999999999999999547799999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHH
Q 012059 362 EIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 441 (472)
Q Consensus 362 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 441 (472)
++++.|+.|++.|||||++++||+|+.+++.|||||+|.+...|+||+||+||+|+.|.+++||+..|.+..+.+.+.++
T Consensus 429 e~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 429 ETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHhchh
Q 012059 442 SSGAGIPRELINSRY 456 (472)
Q Consensus 442 ~~~~~~~~~l~~~~~ 456 (472)
..|-++|.++..++.
T Consensus 509 ~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKK 523 (593)
T ss_pred HcCCcchHHHHhhhh
Confidence 999999999998864
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-57 Score=420.46 Aligned_cols=372 Identities=24% Similarity=0.439 Sum_probs=308.3
Q ss_pred CCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC-CcEEEEccCCCCcchhhHHHHHHHHhhhhhc-----
Q 012059 69 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLH----- 142 (472)
Q Consensus 69 ~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~----- 142 (472)
-+..++.|.++.++.+++++|..+||..|+++|...+|.+..| .|++-.|.||||||++|-+|+++.+......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3556778999999999999999999999999999999999988 7999999999999999999999965443111
Q ss_pred -ccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC--
Q 012059 143 -HSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-- 219 (472)
Q Consensus 143 -~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~-- 219 (472)
.......+..||++|||+||.|+...+..++...++++..++||.....|.+.+...++|+|+|||+|+.++..+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 11223445699999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred -CCCCeeEEEEeccchhhhcCcHHHHHHHHHhC------CCCceEeecccccHH---------------------HHHHH
Q 012059 220 -ELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI------SLPQILMYSATISQE---------------------VEKMS 271 (472)
Q Consensus 220 -~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~------~~~~~i~~SAT~~~~---------------------~~~~~ 271 (472)
++.+++++|+||+|+|++.|+...+..++..+ ...|.+.||||+.-. ++.+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 67889999999999999999999999998887 457999999997421 11222
Q ss_pred hh--hcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEE
Q 012059 272 SS--ISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL 349 (472)
Q Consensus 272 ~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~ 349 (472)
+. +...+.++...........+....+.|...++...|..+|. ...+++|||||+++-+..|+.+|. ..++...
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~-~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLN-NLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe---ecCCceEEEechHHHHHHHHHHHh-hcCCCCc
Confidence 21 23344555444433322222222222333333333333332 235689999999999999999998 8899999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 350 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 350 ~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
.+|+.|.+++|...++.|++....||||||+++||+|||++.|||||..|.+.+.|+||.||+.|++..|..++++.+.+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcC
Q 012059 430 KNLFQELVDILKSSG 444 (472)
Q Consensus 430 ~~~~~~l~~~l~~~~ 444 (472)
...+.++..-|++..
T Consensus 572 ~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKE 586 (731)
T ss_pred hHHHHHHHHHHhhcc
Confidence 999999998888753
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.5e-53 Score=433.85 Aligned_cols=356 Identities=22% Similarity=0.321 Sum_probs=274.5
Q ss_pred CCCcccCcccC--CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCC
Q 012059 69 VPAPILSFSSC--SLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 146 (472)
Q Consensus 69 ~p~~~~~~~~~--~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~ 146 (472)
+|.....+..+ .+++.+.+.|.+.||.+|+++|.++++.+++|+|+++.+|||||||++|++|+++.+..
T Consensus 7 ~p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------- 78 (742)
T TIGR03817 7 LPARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------- 78 (742)
T ss_pred cCCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------
Confidence 34444444444 48999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC----CCCCC
Q 012059 147 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH----DIELD 222 (472)
Q Consensus 147 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~----~~~~~ 222 (472)
..+.++||++||++|+.|+.+.++.+. ..++++..+.|+.. .++...+..+++|+|+||+++...+... ...++
T Consensus 79 ~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~ 156 (742)
T TIGR03817 79 DPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLR 156 (742)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHh
Confidence 346789999999999999999999987 34677766666655 4444566777999999999987543321 12378
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhC--------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCcccee
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVK 294 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 294 (472)
++++||+||+|.+.+ .|...+..++.++ ..+|++++|||+++... +++.++..+..+ +.....+... .
T Consensus 157 ~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~-~ 232 (742)
T TIGR03817 157 RLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGA-R 232 (742)
T ss_pred cCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCc-e
Confidence 899999999999865 3666666655543 45799999999998654 566666665443 2222222111 1
Q ss_pred EEEEEecc-----------------hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh-------cCCeEEE
Q 012059 295 QLAIWVES-----------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT-------TGMKALS 350 (472)
Q Consensus 295 ~~~~~~~~-----------------~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~-------~~~~~~~ 350 (472)
....+... ..+...+..++. .+.++||||+|+..++.++..|+.. .+..+..
T Consensus 233 ~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~ 308 (742)
T TIGR03817 233 TVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAA 308 (742)
T ss_pred EEEEecCCccccccccccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhh
Confidence 22221111 122233333332 3568999999999999999988742 1567889
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC--
Q 012059 351 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-- 428 (472)
Q Consensus 351 ~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-- 428 (472)
+||++.+++|.++++.|++|++++||||+++++|||+|++++||+|+.|.+...|+||+||+||.|+.|.++++...+
T Consensus 309 ~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~ 388 (742)
T TIGR03817 309 YRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPL 388 (742)
T ss_pred eecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred ChHHHHHHHHHHHH
Q 012059 429 NKNLFQELVDILKS 442 (472)
Q Consensus 429 ~~~~~~~l~~~l~~ 442 (472)
|...+....++++.
T Consensus 389 d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 389 DTYLVHHPEALFDR 402 (742)
T ss_pred HHHHHhCHHHHhcC
Confidence 44445544445443
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-54 Score=383.63 Aligned_cols=368 Identities=32% Similarity=0.580 Sum_probs=339.9
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
.+|++++|++++++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++.+... .+...++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-------~ke~qal 98 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-------VKETQAL 98 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-------hHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999999886331 2345699
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
+++|+++||.|..+....++...+..+..+.||.....+...+. ..++|+++||+++.+++....+....++++|+||+
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 99999999999999999999999999999999988886555554 45899999999999999988877888999999999
Q ss_pred chhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 311 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (472)
+.+++.+|..++..++..+ ++.|++++|||.|.++....+.++.+++.+.+.........+.+++..+....|...|.+
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHH
Confidence 9999999999999999999 678999999999999999999999999999999998888999999999888888888888
Q ss_pred HHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCc
Q 012059 312 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 391 (472)
Q Consensus 312 ~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~ 391 (472)
+.. .-...+|||+++..+..+...|. ..++.+..+||+|.+.+|..++..|+.|..+|||+|+.+++|+|+..+.
T Consensus 259 l~~----~~~q~~if~nt~r~v~~l~~~L~-~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 259 LYR----RVTQAVIFCNTRRKVDNLTDKLR-AHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHH----hhhcceEEecchhhHHHHHHHHh-hCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 776 23468999999999999999996 8899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHh
Q 012059 392 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELIN 453 (472)
Q Consensus 392 ~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 453 (472)
.||+|+.|...+.|+||+||+||.|.+|.++.++.+.+...++++.+++.-...++|....+
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 99999999999999999999999999999999999999999999999998888888876543
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-54 Score=388.33 Aligned_cols=363 Identities=28% Similarity=0.474 Sum_probs=338.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
.-+|.+++|+..+.+++.+.||..|+|+|++.+|.++.+++++-.+-||||||.||++|+++++... ...+-++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~------s~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH------SQTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc------cccccce
Confidence 4579999999999999999999999999999999999999999999999999999999999998662 2467899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
+++.||++|+.|..+..+.+++..++++++++||+...++...+..++||+++||+++..+.....+.++.+.|||+||+
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999988887788999999999999
Q ss_pred chhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 311 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (472)
++++.++|.+++.+++.++ ...|.++||||+|..+.++++.-+.+|..+.........+.++..+..+...++...|+.
T Consensus 174 drlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHH
Confidence 9999999999999999999 567999999999999999999999999999988777777778888888888899999988
Q ss_pred HHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCc
Q 012059 312 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 391 (472)
Q Consensus 312 ~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~ 391 (472)
++..... ...++|||.+..+++.+...|. ..|+.+..++|.+++..|..-+..|+.++..+||.|++++||+|+|-.+
T Consensus 254 il~~~~~-~~~t~vf~~tk~hve~~~~ll~-~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplld 331 (529)
T KOG0337|consen 254 ILGGRIK-DKQTIVFVATKHHVEYVRGLLR-DFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLD 331 (529)
T ss_pred HHhcccc-ccceeEEecccchHHHHHHHHH-hcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccc
Confidence 8876554 4579999999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHc
Q 012059 392 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 443 (472)
Q Consensus 392 ~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 443 (472)
.|||||+|.+...|+||+||+.|.|+.|.+|.++.+++..++-++-.++-+.
T Consensus 332 nvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 332 NVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred ccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCc
Confidence 9999999999999999999999999999999999999998888887776553
No 34
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-52 Score=371.31 Aligned_cols=371 Identities=27% Similarity=0.492 Sum_probs=318.9
Q ss_pred CcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCC
Q 012059 71 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 148 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 148 (472)
-...+|+++.|.+++++.+-.++|.+|+.+|..|+|.++.. +|+|.++..|+|||.+|.+.++.++.. ...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~-------~~~ 159 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP-------DVV 159 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-------ccc
Confidence 45678999999999999999999999999999999999954 899999999999999999999987643 234
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc-CCCCCCCeeEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMF 227 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~-~~~~~~~~~~i 227 (472)
.|.++.++||++||.|.-+.+.+.++..+++....+-|....+ .-.-..+|+|+||+.+.+++.. ....+..++.+
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 6789999999999999999999999988777777766652211 0001257999999999999987 77788999999
Q ss_pred EEeccchhhhc-CcHHHHHHHHHhCC-CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecch-h
Q 012059 228 VLDEVDCMLQR-GFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-K 304 (472)
Q Consensus 228 VvDE~h~~~~~-~~~~~~~~i~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~ 304 (472)
|+|||+.|++. ||..+-..+...++ +.|++++|||+.+.+..++..+.+++..+...........+.+++..+... .
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 99999999874 58888888888886 899999999999999999999999999999999888889999999888765 5
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 012059 305 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 384 (472)
Q Consensus 305 ~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 384 (472)
|...|.++. .. ..-+..+|||.++..+..++..+. ..|..+..+||+|...+|..+++.|+.|..+|||+|++++||
T Consensus 317 K~~~l~~ly-g~-~tigqsiIFc~tk~ta~~l~~~m~-~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 317 KYQALVNLY-GL-LTIGQSIIFCHTKATAMWLYEEMR-AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred HHHHHHHHH-hh-hhhhheEEEEeehhhHHHHHHHHH-hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 566666643 22 234578999999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCC------CHhHHHHhhcccccCCCcceEEEEEcCC-ChHHHHHHHHHHHHcCC-CCCHHHHhc
Q 012059 385 VELLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSSGA-GIPRELINS 454 (472)
Q Consensus 385 idi~~~~~VI~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~-~~~~~l~~~ 454 (472)
||++.++.|||||+|. +++.|+||+||+||.|+.|.++-|++.. ....+..+.++...... -.|+++.++
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 9999999999999987 6889999999999999999999988765 56677788888755543 345555544
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.7e-51 Score=415.92 Aligned_cols=340 Identities=23% Similarity=0.311 Sum_probs=262.0
Q ss_pred Cccc--CCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 75 SFSS--CSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 75 ~~~~--~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
.|.+ +++...+...++. +||..++|+|.++|+.++.|+|+++.+|||+|||+||++|++.. ++.
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------------~Gi 502 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------------PGI 502 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------------CCc
Confidence 4553 4556666666654 69999999999999999999999999999999999999999852 356
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh------cCCCEEEeChHHHHH---HHHc--CCCC
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ------QGVELIVGTPGRLID---LLMK--HDIE 220 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~I~i~Tp~~l~~---~~~~--~~~~ 220 (472)
+|||+|+++|+.++...+.. .++....+.++....++...+. ...+|+++|||+|.. ++.. ....
T Consensus 503 TLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~ 578 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS 578 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh
Confidence 99999999998754444443 3678888888887666554433 358999999999852 1211 1112
Q ss_pred CCCeeEEEEeccchhhhcC--cHHHHHH---HHHhCCCCceEeecccccHHHHHHHhhhcC--CcEEEEeCCCCCCccce
Q 012059 221 LDDIRMFVLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSISK--DIVVVSVGKPNMPNKAV 293 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~--~~~~~~~---i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~ 293 (472)
...+++|||||||++.+|+ |++.+.. +...++..+++++|||++..+.......+. ++..+. .... ..++
T Consensus 579 ~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~--RpNL 655 (1195)
T PLN03137 579 RGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFN--RPNL 655 (1195)
T ss_pred ccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccC--ccce
Confidence 3458899999999999987 7776655 344568889999999999887764443332 222222 1111 1122
Q ss_pred eEEEEEecchh-HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 012059 294 KQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 372 (472)
Q Consensus 294 ~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 372 (472)
.+....... ....+..++... ..+.++||||.++..++.++..|. ..|+.+..+||+|++++|..+++.|..|++
T Consensus 656 --~y~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~-~~Gika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 656 --WYSVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQ-EFGHKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred --EEEEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHH-HCCCCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 222222222 234555555433 234578999999999999999998 789999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHH
Q 012059 373 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 373 ~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 438 (472)
+|||||+++++|||+|++++||||++|.+++.|+||+|||||.|..|.|++|++..|...+..++.
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999887766665553
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-52 Score=380.65 Aligned_cols=362 Identities=26% Similarity=0.423 Sum_probs=292.8
Q ss_pred ccCcccCCCCHHHHH----------HHHHCCCCCCCHHHHHHHhhHh---------cCCcEEEEccCCCCcchhhHHHHH
Q 012059 73 ILSFSSCSLSQKLLQ----------NIEAAGYDMPTPVQMQAIPSAL---------SGKSLLVSANTGSGKTASFLVPVI 133 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~----------~l~~~g~~~~~~~Q~~~i~~~~---------~~~~~iv~a~TGsGKT~~~~l~~~ 133 (472)
...|+.+++++.+.. .+.+++++..+|+|..++|.++ .++|+.|.||||||||++|.+|++
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 344555665555544 4889999999999999999986 368999999999999999999999
Q ss_pred HHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcC-----CCEEEeChH
Q 012059 134 SQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQG-----VELIVGTPG 208 (472)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~I~i~Tp~ 208 (472)
+.+.... -+.-++|||+||++|+.|+++.+.++....++.+..+.|..+..++...+.+. .||+|+||+
T Consensus 206 Q~L~~R~------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 206 QLLSSRP------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred HHHccCC------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 9886521 23478999999999999999999999999999988888888888877777653 489999999
Q ss_pred HHHHHHHc-CCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCC-----------------------------------
Q 012059 209 RLIDLLMK-HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS----------------------------------- 252 (472)
Q Consensus 209 ~l~~~~~~-~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~----------------------------------- 252 (472)
+|.+++.. ..+++++++++|+||||++++..|...+..++..+.
T Consensus 280 RLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~ 359 (620)
T KOG0350|consen 280 RLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYP 359 (620)
T ss_pred HHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCc
Confidence 99999984 778999999999999999998776655555543321
Q ss_pred CCceEeecccccHHHHHHHhhhcCCcEEEEeC----CCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEEC
Q 012059 253 LPQILMYSATISQEVEKMSSSISKDIVVVSVG----KPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVG 328 (472)
Q Consensus 253 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~ 328 (472)
....+.+|||+...-..+...-+..|....+. .....+..+.+....+....+...+..++.... ..++|+|++
T Consensus 360 ~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k--~~r~lcf~~ 437 (620)
T KOG0350|consen 360 PLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK--LNRTLCFVN 437 (620)
T ss_pred hhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh--cceEEEEec
Confidence 11356778887665555555555555333333 223334445555555555556666667765543 357999999
Q ss_pred CchhHHHHHHHHh---hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHH
Q 012059 329 SRLGADLLSNAIS---VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEY 405 (472)
Q Consensus 329 ~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~ 405 (472)
+...+..++..|. ...+.++..+.|+++.+.|...++.|..|.++||||+|+++||+|+.++++|||||+|.+...|
T Consensus 438 S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~kty 517 (620)
T KOG0350|consen 438 SVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTY 517 (620)
T ss_pred chHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHH
Confidence 9999999998886 2345667779999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHH
Q 012059 406 VHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 442 (472)
Q Consensus 406 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 442 (472)
+||+||++|+|+.|.|+.+....+...+.++++....
T Consensus 518 VHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 518 VHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999999999999888888766
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1e-50 Score=382.72 Aligned_cols=355 Identities=25% Similarity=0.444 Sum_probs=316.6
Q ss_pred eCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhccc
Q 012059 65 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 144 (472)
Q Consensus 65 ~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~ 144 (472)
.++-.+.....|+++-|...++..|+..+|..|+++|..|||.++.+-|+||++..|+|||++|.+.+++.+..
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------ 89 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------ 89 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------
Confidence 34555777788999999999999999999999999999999999999999999999999999999988887643
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHHHHhcC-CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 145 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKG-LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 145 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
+...+..+||+|||++|.|+.+.+..++.. .+++|.+.+||.........+. .++|+|+|||++..+++.+.++.++
T Consensus 90 -~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 90 -RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred -ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccc
Confidence 245678999999999999999999999874 5699999999999887666654 4889999999999999999999999
Q ss_pred eeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEec
Q 012059 224 IRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE 301 (472)
Q Consensus 224 ~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 301 (472)
++++|+||||.+.+ ..|..++..|+..+ ...|++++|||.|..+...+..++.++..+.........-.+.|++....
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC 247 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc
Confidence 99999999999998 56999999999999 67899999999999999999999999999998888777777888877655
Q ss_pred ch--------hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q 012059 302 SN--------KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVP 373 (472)
Q Consensus 302 ~~--------~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 373 (472)
.. .+.+.|-.++.+.. -...||||+....|+-++.+|. ..|+.+.++.|.|++++|..+++.+++-.++
T Consensus 248 s~nnsveemrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~-ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~r 324 (980)
T KOG4284|consen 248 SPNNSVEEMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLK-SSGLDVTFISGAMSQKDRLLAVDQLRAFRVR 324 (980)
T ss_pred CCcchHHHHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhh-ccCCCeEEeccccchhHHHHHHHHhhhceEE
Confidence 43 24445555554433 2368999999999999999998 8899999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 374 VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 374 vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
|||+||..+||||-++++.|||.|.|.+..+|.||||||||.|..|.+++|+.....
T Consensus 325 ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 325 ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999987654
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.9e-49 Score=393.91 Aligned_cols=325 Identities=21% Similarity=0.326 Sum_probs=251.6
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.+||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. ++.+||++|+++|+.|+.+.+.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-------------~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-------------DGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-------------CCcEEEEecHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998742 4569999999999999888877
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHH-HcCCC-CCCCeeEEEEeccchhhhcC--cHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLL-MKHDI-ELDDIRMFVLDEVDCMLQRG--FRD 242 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~-~~~~~-~~~~~~~iVvDE~h~~~~~~--~~~ 242 (472)
.+ ++.+..+.++....+... .+. ...+|+++||+++.... ....+ ...++++||+||||++.+++ |+.
T Consensus 73 ~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 73 AS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 64 466666666655443221 222 34899999999975321 01111 45789999999999999876 555
Q ss_pred HHHH---HHHhCCCCceEeecccccHHHHHHHhhhc--CCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcC
Q 012059 243 QVMQ---IFRAISLPQILMYSATISQEVEKMSSSIS--KDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQ 317 (472)
Q Consensus 243 ~~~~---i~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 317 (472)
.+.. +...++..+++++|||+++.+.......+ .++..+... .. ..++... ...........+..++...
T Consensus 149 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~--r~nl~~~-v~~~~~~~~~~l~~~l~~~- 223 (470)
T TIGR00614 149 DYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FD--RPNLYYE-VRRKTPKILEDLLRFIRKE- 223 (470)
T ss_pred HHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CC--CCCcEEE-EEeCCccHHHHHHHHHHHh-
Confidence 5444 45556889999999999987765443332 233333221 11 1112111 1112223455666666532
Q ss_pred CCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEec
Q 012059 318 HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD 397 (472)
Q Consensus 318 ~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~ 397 (472)
..+..+||||++++.++.++..|. ..++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~-~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQ-NLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHH-hcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeC
Confidence 234467999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHH
Q 012059 398 MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 398 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 438 (472)
+|.|.+.|+||+||+||.|..|.|++|+++.|...++.++.
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999999988776666543
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-49 Score=411.84 Aligned_cols=339 Identities=22% Similarity=0.278 Sum_probs=262.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
.|++++|++.+.+.+.+.||.+|+|+|.++++. +.+|+|++++||||||||++|.+|++..+.. +.++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~----------~~kal 71 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----------GGKAL 71 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----------CCcEE
Confidence 578899999999999999999999999999998 6799999999999999999999999988742 56799
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 233 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h 233 (472)
|++|+++||.|+++.++.+.. .++++..++|+..... ......+|+|+||+++..++.+....+.++++||+||+|
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 999999999999999998753 4788888888765433 223458999999999999988765567899999999999
Q ss_pred hhhhcCcHHHHHHHHHhC----CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCC-----ccce--eEEEEEecc
Q 012059 234 CMLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP-----NKAV--KQLAIWVES 302 (472)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~--~~~~~~~~~ 302 (472)
.+.+.+++..++.++.++ +..|++++|||+++ ..+++.++....+.......... ...+ .........
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 999888888777776655 67899999999986 45566665433211000000000 0000 000000010
Q ss_pred hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc-----------------------------------CCe
Q 012059 303 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-----------------------------------GMK 347 (472)
Q Consensus 303 ~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~-----------------------------------~~~ 347 (472)
..+ ......+......++++||||+++..++.++..|.... ...
T Consensus 227 ~~~-~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 227 PSK-DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred ccc-hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 011 12222332222356789999999999999888776321 136
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ec-----CCCCHhHHHHhhcccccCCCc
Q 012059 348 ALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-----MPNSIKEYVHQIGRASQMGDE 418 (472)
Q Consensus 348 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~-----~p~s~~~~~Qr~GR~~R~g~~ 418 (472)
+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||+ || .|.+..+|.||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 889999999999999999999999999999999999999999999997 66 588999999999999999975
Q ss_pred --ceEEEEEcCCC
Q 012059 419 --GTAIVFVNEEN 429 (472)
Q Consensus 419 --g~~~~~~~~~~ 429 (472)
|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 99999987653
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.9e-48 Score=392.25 Aligned_cols=332 Identities=21% Similarity=0.313 Sum_probs=256.0
Q ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 81 LSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 81 l~~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
..+...+.|++ +||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++.. ...+||++|++
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-------------~g~tlVisPl~ 75 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-------------DGLTLVVSPLI 75 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-------------CCCEEEEecHH
Confidence 33444445544 69999999999999999999999999999999999999999842 34699999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHH---Hh-cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchh
Q 012059 160 ELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 235 (472)
Q Consensus 160 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~ 235 (472)
+|+.|+.+.+..+ ++...++.++......... +. ...+++++||+++........+...++++||+||||++
T Consensus 76 sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 76 SLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999988888765 4666677676655443322 22 34789999999986422222233457899999999999
Q ss_pred hhcC--cHHHH---HHHHHhCCCCceEeecccccHHHHHHH-hhh-cCCcEEEEeCCCCCCccceeEEEEEecchhHHHH
Q 012059 236 LQRG--FRDQV---MQIFRAISLPQILMYSATISQEVEKMS-SSI-SKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQK 308 (472)
Q Consensus 236 ~~~~--~~~~~---~~i~~~~~~~~~i~~SAT~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (472)
.+++ |++.+ ..+...++..+++++|||++....... ..+ +.++.... ..... .++ .+...........
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r--~nl--~~~v~~~~~~~~~ 226 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDR--PNI--RYTLVEKFKPLDQ 226 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCC--Ccc--eeeeeeccchHHH
Confidence 9876 55444 344556688999999999998765433 332 23333322 21111 112 1222333344456
Q ss_pred HHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 012059 309 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 388 (472)
Q Consensus 309 l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 388 (472)
+...+... .+.++||||+++..++.++..|. ..++.+..+||+|++++|..+++.|+.|+++|||||+++++|||+|
T Consensus 227 l~~~l~~~--~~~~~IIFc~tr~~~e~la~~L~-~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip 303 (607)
T PRK11057 227 LMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQ-SRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHHhc--CCCCEEEEECcHHHHHHHHHHHH-hCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCC
Confidence 66666443 45689999999999999999998 7799999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHH
Q 012059 389 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 389 ~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 437 (472)
++++||+||.|.|.+.|+||+||+||.|.+|.|++|+++.|...++.++
T Consensus 304 ~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876555443
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-47 Score=398.93 Aligned_cols=341 Identities=21% Similarity=0.266 Sum_probs=262.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
+|+++++++.+.+.+.+.||.+|+|+|.++++. +++|+|+++++|||||||++|.+|++.++.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------cCCeEE
Confidence 567889999999999999999999999999986 7799999999999999999999999988754 356899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 233 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h 233 (472)
|++|+++|+.|+++.+..+. ..++++..++|+..... .....++|+|+||+++..++......++++++||+||+|
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred EEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 99999999999999998864 46788888888765433 223568999999999999887766678899999999999
Q ss_pred hhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchh--H-HHHH
Q 012059 234 CMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK--K-KQKL 309 (472)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l 309 (472)
.+.+.++...+..++.++ ...|++++|||+++ ..+++.++....................+......... + ...+
T Consensus 149 ~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 149 LIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred ccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 999888888898888887 67899999999987 56677765443221110000000000011111111110 0 0111
Q ss_pred HHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh--------------------------------cCCeEEEEcCCCCH
Q 012059 310 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT--------------------------------TGMKALSIHGEKPM 357 (472)
Q Consensus 310 ~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~--------------------------------~~~~~~~~~~~~~~ 357 (472)
...+.+....+.++||||+++..++.++..|... ....+.++||+|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 2222222224568999999999998877666321 13458899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE-------ecCCC-CHhHHHHhhcccccCC--CcceEEEEEcC
Q 012059 358 KERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-------FDMPN-SIKEYVHQIGRASQMG--DEGTAIVFVNE 427 (472)
Q Consensus 358 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~-------~~~p~-s~~~~~Qr~GR~~R~g--~~g~~~~~~~~ 427 (472)
++|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|.||+|||||.| ..|.+++++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999984 44433 5779999999999976 45999999987
Q ss_pred CC
Q 012059 428 EN 429 (472)
Q Consensus 428 ~~ 429 (472)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 55
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.1e-47 Score=388.92 Aligned_cols=322 Identities=25% Similarity=0.360 Sum_probs=255.0
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.+||..|+|+|.++++.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+.+.++
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-------------~g~~lVisPl~sL~~dq~~~l~ 74 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-------------KGLTVVISPLISLMKDQVDQLR 74 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-------------CCcEEEEcCCHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999998742 3458999999999999888887
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHH---H-hcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC--cHHHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYR---I-QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--FRDQV 244 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~--~~~~~ 244 (472)
.+ ++.+..+.++....+.... + ....+|+++||+++............++++||+||||++.+++ |++.+
T Consensus 75 ~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 75 AA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 75 4667777777665543322 2 2458999999999865433333456689999999999999876 66655
Q ss_pred HHH---HHhCCCCceEeecccccHHHHHHHhhhcC--CcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCC
Q 012059 245 MQI---FRAISLPQILMYSATISQEVEKMSSSISK--DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHF 319 (472)
Q Consensus 245 ~~i---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 319 (472)
..+ ...++..+++++|||++..+.......+. ++..+. .... ..++ .+.......+...+..++....
T Consensus 151 ~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~--r~nl--~~~v~~~~~~~~~l~~~l~~~~-- 223 (591)
T TIGR01389 151 QRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-TSFD--RPNL--RFSVVKKNNKQKFLLDYLKKHR-- 223 (591)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCC--CCCc--EEEEEeCCCHHHHHHHHHHhcC--
Confidence 444 44556777999999999877654443332 222221 1111 1112 2222334455667777776543
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP 399 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p 399 (472)
+.++||||+++..++.++..|. ..++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+|++|
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~-~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLE-SQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHH-hCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 5689999999999999999998 779999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHH
Q 012059 400 NSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 400 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 437 (472)
.|.+.|.|++||+||.|..|.|++++++.|...++.++
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999988765555443
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.3e-46 Score=395.80 Aligned_cols=342 Identities=18% Similarity=0.261 Sum_probs=252.0
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 160 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~ 160 (472)
+++.+.+.+.. +|..|+|+|.++++.+++|+|++++||||||||++|++|++.++...... .....+.++||++|+++
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE-GELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-cCCCCCeEEEEEcCHHH
Confidence 56777776665 79999999999999999999999999999999999999999988753211 11134678999999999
Q ss_pred HHHHHHHHHHH-------Hh----cCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC--CCCCeeE
Q 012059 161 LCIQVEEQAKL-------LG----KGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI--ELDDIRM 226 (472)
Q Consensus 161 L~~q~~~~~~~-------~~----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~--~~~~~~~ 226 (472)
|+.|+++.+.. +. ... ++++...+|+....+....+...++|+|+||++|..++..... .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99998875542 22 233 5778888888887777667777899999999999887765432 4788999
Q ss_pred EEEeccchhhhcCcHHHHHHHHHhC-----CCCceEeecccccHHHHHHHhhhcCC-------cEEEEeCCCCCCcccee
Q 012059 227 FVLDEVDCMLQRGFRDQVMQIFRAI-----SLPQILMYSATISQEVEKMSSSISKD-------IVVVSVGKPNMPNKAVK 294 (472)
Q Consensus 227 iVvDE~h~~~~~~~~~~~~~i~~~~-----~~~~~i~~SAT~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~ 294 (472)
||+||+|.+.+..+...+...+.++ +..|++++|||+++ ...++.++... +..+.... ......+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccC-CCccceEE
Confidence 9999999998776665555444333 56899999999976 34444444321 11111111 00000010
Q ss_pred EEE-----EEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc-----CCeEEEEcCCCCHHHHHHHH
Q 012059 295 QLA-----IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-----GMKALSIHGEKPMKERREIM 364 (472)
Q Consensus 295 ~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~~r~~~~ 364 (472)
... ...........+...+......+.++||||+++..++.++..|++.. +..+..+||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 000 00111112233344444333345689999999999999999998432 46789999999999999999
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCC-CcceEEEEEc
Q 012059 365 RSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG-DEGTAIVFVN 426 (472)
Q Consensus 365 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~ 426 (472)
+.|++|+++|||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999864 3344444443
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9.2e-46 Score=383.75 Aligned_cols=333 Identities=19% Similarity=0.225 Sum_probs=255.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 154 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~li 154 (472)
.|+++++++.+++.+.+.+|. ++++|.++++.+.+++|+++++|||||||+++.++++..+.. +.++||
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----------~~k~v~ 70 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----------GLKSIY 70 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----------CCcEEE
Confidence 567889999999999999996 999999999999999999999999999999999999887643 467999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 012059 155 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 234 (472)
Q Consensus 155 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~ 234 (472)
++|+++||.|+++.+.++. ..+.++...+|+..... .....++|+|+||+++..++.+....+.++++||+||+|+
T Consensus 71 i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 9999999999999998864 45778888887755432 2235689999999999998887666688999999999999
Q ss_pred hhhcCcHHHHHHHHHhC----CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEE-----EEecch-h
Q 012059 235 MLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLA-----IWVESN-K 304 (472)
Q Consensus 235 ~~~~~~~~~~~~i~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~-~ 304 (472)
+.+.++...+..++..+ +..|++++|||+++ ..++++++....+..... +..+.... ...... .
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r-----~vpl~~~i~~~~~~~~~~~~~ 220 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFR-----PVPLKLGILYRKRLILDGYER 220 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCC-----CCCeEEEEEecCeeeeccccc
Confidence 98877777777666543 56899999999987 566777664433211110 11111100 011111 1
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc------------------------CCeEEEEcCCCCHHHH
Q 012059 305 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT------------------------GMKALSIHGEKPMKER 360 (472)
Q Consensus 305 ~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~------------------------~~~~~~~~~~~~~~~r 360 (472)
....+..++.+....++++||||+++..++.++..|.... ...+..+||+|++++|
T Consensus 221 ~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR 300 (674)
T PRK01172 221 SQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQR 300 (674)
T ss_pred ccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHH
Confidence 1112333444433456789999999999999998886321 1357889999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEec---------CCCCHhHHHHhhcccccCCC--cceEEEEEcCCC
Q 012059 361 REIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD---------MPNSIKEYVHQIGRASQMGD--EGTAIVFVNEEN 429 (472)
Q Consensus 361 ~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~---------~p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~ 429 (472)
..+++.|++|.++|||||+++++|+|+|+.. ||+.+ .|.+..+|.||+|||||.|. .|.+++++...+
T Consensus 301 ~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 301 RFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999999864 44443 25588999999999999985 577888876543
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-44 Score=374.63 Aligned_cols=392 Identities=17% Similarity=0.220 Sum_probs=281.3
Q ss_pred CCcccccCCCHHHHHHHHHhcCceeeC--CCC---C--CcccCcccCCCCHHHHHHHH-HCCCCCCCHHHHHHHhhHhcC
Q 012059 40 DENSGFQSLTIGQTDSLRKRLEINVKG--DAV---P--APILSFSSCSLSQKLLQNIE-AAGYDMPTPVQMQAIPSALSG 111 (472)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---p--~~~~~~~~~~l~~~i~~~l~-~~g~~~~~~~Q~~~i~~~~~~ 111 (472)
.+.+.+.++....|...+.+..-.+.. ..+ . .....-..+..+..+.+.+. .++| +||+.|.+||+.++++
T Consensus 388 ~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d 466 (926)
T TIGR00580 388 GKNPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKAD 466 (926)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhh
Confidence 345668888889999887765322111 000 0 00000011334455656554 4689 5999999999999864
Q ss_pred ------CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEc
Q 012059 112 ------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVG 185 (472)
Q Consensus 112 ------~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 185 (472)
.|.+++|+||||||.+|+++++..+.. +.+++|++||++||.|+++.++++....++++..++|
T Consensus 467 ~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg 536 (926)
T TIGR00580 467 MESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSR 536 (926)
T ss_pred hcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEec
Confidence 789999999999999999999887643 5789999999999999999999988888888888888
Q ss_pred CcchHHH---HHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeec
Q 012059 186 GDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYS 260 (472)
Q Consensus 186 g~~~~~~---~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~S 260 (472)
+....+. ...+.. .++|+|+||.. + .....+.+++++|+||+|++. ......+..+ ...++++||
T Consensus 537 ~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~~~~~vL~~S 606 (926)
T TIGR00580 537 FRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFG-----VKQKEKLKELRTSVDVLTLS 606 (926)
T ss_pred cccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccccc-----hhHHHHHHhcCCCCCEEEEe
Confidence 7654433 233444 48999999942 2 345678899999999999963 2223344444 678999999
Q ss_pred ccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHH
Q 012059 261 ATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAI 340 (472)
Q Consensus 261 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L 340 (472)
||+.+....+......++..+...... ...+...+...........+...+ ..+++++|||++...++.+++.|
T Consensus 607 ATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~i~~~i~~el----~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 607 ATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPELVREAIRREL----LRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred cCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHHHHHHHHHHH----HcCCeEEEEECCcHHHHHHHHHH
Confidence 998766655555555566555543222 112333332222111122222222 34578999999999999999999
Q ss_pred hhh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCC-CHhHHHHhhcccccCCCc
Q 012059 341 SVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDE 418 (472)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~ 418 (472)
++. .+.++..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|. +..+|.||+||+||.|+.
T Consensus 681 ~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~ 760 (926)
T TIGR00580 681 RELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK 760 (926)
T ss_pred HHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC
Confidence 843 378899999999999999999999999999999999999999999999999999875 577999999999999999
Q ss_pred ceEEEEEcCCC--hHHHHHHHHHHHH---cCCCCCHHHHhchhhc
Q 012059 419 GTAIVFVNEEN--KNLFQELVDILKS---SGAGIPRELINSRYTV 458 (472)
Q Consensus 419 g~~~~~~~~~~--~~~~~~l~~~l~~---~~~~~~~~l~~~~~~~ 458 (472)
|.|++++++.+ .+...+-++.+++ .|..+--...+++.+.
T Consensus 761 g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg 805 (926)
T TIGR00580 761 AYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRG 805 (926)
T ss_pred eEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Confidence 99999997653 1233333344443 3446665666666553
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-43 Score=364.06 Aligned_cols=350 Identities=18% Similarity=0.252 Sum_probs=255.9
Q ss_pred HHHHHHH-HHCCCCCCCHHHHHHHhhHhcC------CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEE
Q 012059 83 QKLLQNI-EAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 155 (472)
Q Consensus 83 ~~i~~~l-~~~g~~~~~~~Q~~~i~~~~~~------~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil 155 (472)
..+.+.+ ..++| +||++|.++++.+.++ .+.+++||||||||++|++|++..+. .+.+++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------~g~q~lil 316 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------AGYQAALM 316 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------cCCeEEEE
Confidence 3444444 55688 6999999999999865 47999999999999999999988763 36789999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH---HHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEec
Q 012059 156 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR---QVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 231 (472)
Q Consensus 156 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE 231 (472)
+||++||.|+++.++++...+++++..++|+....+ ....+.. .++|+|+||+.+.+ ...+.++++||+||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEec
Confidence 999999999999999999888899999999987543 3334444 49999999987643 34578899999999
Q ss_pred cchhhhcCcHHHHHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHH
Q 012059 232 VDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 311 (472)
Q Consensus 232 ~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (472)
+|++... +...+...-..+++++||||+.+....+......+...+... ......+..... . ......++.
T Consensus 392 ~Hrfg~~----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~--p~~r~~i~~~~~--~-~~~~~~~~~ 462 (681)
T PRK10917 392 QHRFGVE----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL--PPGRKPITTVVI--P-DSRRDEVYE 462 (681)
T ss_pred hhhhhHH----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC--CCCCCCcEEEEe--C-cccHHHHHH
Confidence 9997432 222233333568999999998665544433222233333221 111222333322 2 222344445
Q ss_pred HHHhcCCCCCCEEEEECCch--------hHHHHHHHHhhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012059 312 ILMSKQHFTPPAVVYVGSRL--------GADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 382 (472)
Q Consensus 312 ~l~~~~~~~~~~lIf~~~~~--------~~~~l~~~L~~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 382 (472)
.+......+.+++|||+..+ .+..+++.|.+.. +..+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 55544455678999999643 4556677776433 47899999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEecCCC-CHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhh
Q 012059 383 RGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYT 457 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~ 457 (472)
+|+|+|++++||+++.|. ...++.||+||+||.|..|.|++++.....+...+-++.+++....+.-.-.+++.+
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~r 618 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLELR 618 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhhC
Confidence 999999999999999987 578889999999999999999999964433344455666666554444333444433
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.2e-44 Score=362.88 Aligned_cols=318 Identities=20% Similarity=0.233 Sum_probs=242.4
Q ss_pred HHHHH-CCCCCCCHHHHHHHhhHhcCC-cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCc-eEEEEcCCHHHHH
Q 012059 87 QNIEA-AGYDMPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP-LAMVLTPTRELCI 163 (472)
Q Consensus 87 ~~l~~-~g~~~~~~~Q~~~i~~~~~~~-~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~-~~lil~Pt~~L~~ 163 (472)
+.+.. .||. |+|||.++++.++.|+ ++++.+|||||||.++.++++... .....+ ++++++|||+|+.
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~--------~~~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE--------IGAKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc--------ccccccceEEEeCchHHHHH
Confidence 33433 5897 9999999999999998 578889999999997654444221 112234 4555779999999
Q ss_pred HHHHHHHHHhcCC-----------------------CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC-
Q 012059 164 QVEEQAKLLGKGL-----------------------PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI- 219 (472)
Q Consensus 164 q~~~~~~~~~~~~-----------------------~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~- 219 (472)
|+++.+.++++.+ ++++.+++||.....++..+..+++|+|+|++ ++.+..+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~ 152 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLF 152 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccc
Confidence 9999999998754 48889999999999999999999999999964 4433332
Q ss_pred ---------------CCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--CC----CceEeecccccHHHHHHHhhhcCCc
Q 012059 220 ---------------ELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SL----PQILMYSATISQEVEKMSSSISKDI 278 (472)
Q Consensus 220 ---------------~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~----~~~i~~SAT~~~~~~~~~~~~~~~~ 278 (472)
.+.+++++|+|||| ++++|...+..|++.+ +. .|+++||||++.++..+...++.++
T Consensus 153 ~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 153 SGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred cccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 26789999999999 6799999999999964 22 5899999999988888877777666
Q ss_pred EEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHh-cCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCH
Q 012059 279 VVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS-KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPM 357 (472)
Q Consensus 279 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 357 (472)
..+.+.........+.+++ ......+...+...+.. ....++++||||+++..++.+++.|+ ..++ ..+||+|++
T Consensus 231 ~~i~V~~~~l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~-~~g~--~lLHG~m~q 306 (844)
T TIGR02621 231 YKHPVLKKRLAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP-KEKF--ELLTGTLRG 306 (844)
T ss_pred ceeecccccccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH-hcCC--eEeeCCCCH
Confidence 6555544433334444432 22333333333332221 12345689999999999999999998 4454 789999999
Q ss_pred HHHH-----HHHHHHhc----CC-------CcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCc-ce
Q 012059 358 KERR-----EIMRSFLV----GE-------VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE-GT 420 (472)
Q Consensus 358 ~~r~-----~~~~~f~~----g~-------~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~-g~ 420 (472)
.+|. .+++.|++ |. ..|||||+++++|||++. ++||++..| .+.|+||+||+||.|.. +.
T Consensus 307 ~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 9999 78999987 44 679999999999999986 899988777 79999999999999985 33
Q ss_pred EEEEEc
Q 012059 421 AIVFVN 426 (472)
Q Consensus 421 ~~~~~~ 426 (472)
.+.++.
T Consensus 384 ~i~vv~ 389 (844)
T TIGR02621 384 QIAVVH 389 (844)
T ss_pred eEEEEe
Confidence 355543
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=362.05 Aligned_cols=337 Identities=21% Similarity=0.296 Sum_probs=271.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 160 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~ 160 (472)
|++.+.+.+... |..|||.|.+|||.+.+|+|+++.||||||||+++.+|++..+.... ......+-.+|||+|.++
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~--~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG--KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc--CCCCCCceEEEEeCcHHH
Confidence 788899999888 99999999999999999999999999999999999999999998753 122345678999999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC--CCCCCeeEEEEeccchhhhc
Q 012059 161 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 161 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~--~~~~~~~~iVvDE~h~~~~~ 238 (472)
|.+.+.+-++.++..+|+.+..-+|+....+..+...+.+||+|+|||.|.-++.... -.+.++.+||+||+|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 9999999999999999999999999998888777788889999999999988887643 25889999999999999877
Q ss_pred CcHHHHHHHHHhC----CCCceEeecccccHHHHHHHhhhcCC--cEE-EEeCCCCCCccceeEEEEE-----e--cchh
Q 012059 239 GFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKD--IVV-VSVGKPNMPNKAVKQLAIW-----V--ESNK 304 (472)
Q Consensus 239 ~~~~~~~~i~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~-i~~~~~~~~~~~~~~~~~~-----~--~~~~ 304 (472)
..+.++.-.+.++ ...|.|++|||..+ ....++++... +.. +.+...... .+.-.... . ....
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~--~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKL--EIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcc--eEEEEecCCccccccchhHH
Confidence 6666666555544 57999999999985 55566666554 233 222222111 11111100 0 0112
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 012059 305 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 384 (472)
Q Consensus 305 ~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 384 (472)
....+.+++.+ ...+|||+||+..++.++..|++..+..+..+||.++.+.|..+++.|++|+.+++|||+.++-|
T Consensus 242 ~~~~i~~~v~~----~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 242 LYERIAELVKK----HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred HHHHHHHHHhh----cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 33444444433 34699999999999999999996556899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCHhHHHHhhccccc-CCCcceEEEEEcC
Q 012059 385 VELLGVRQVIIFDMPNSIKEYVHQIGRASQ-MGDEGTAIVFVNE 427 (472)
Q Consensus 385 idi~~~~~VI~~~~p~s~~~~~Qr~GR~~R-~g~~g~~~~~~~~ 427 (472)
||+.+++.||+++.|.++..++||+||+|+ .|.....+++...
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999995 4444666666655
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3e-43 Score=373.81 Aligned_cols=391 Identities=17% Similarity=0.177 Sum_probs=282.5
Q ss_pred CcccccCCCHHHHHHHHHhcCceeeCC--CCC-----CcccCcccCCCCHHH-HHHHHHCCCCCCCHHHHHHHhhHhcC-
Q 012059 41 ENSGFQSLTIGQTDSLRKRLEINVKGD--AVP-----APILSFSSCSLSQKL-LQNIEAAGYDMPTPVQMQAIPSALSG- 111 (472)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p-----~~~~~~~~~~l~~~i-~~~l~~~g~~~~~~~Q~~~i~~~~~~- 111 (472)
+.+.++.+....|...+++..-.+..- ++- .....-..+..+..+ .+....++| .||+.|.+||+.++.+
T Consensus 538 ~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~ 616 (1147)
T PRK10689 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDM 616 (1147)
T ss_pred CCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHh
Confidence 456688899999998877644222110 000 000000112223333 445577788 7999999999999976
Q ss_pred -----CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 012059 112 -----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG 186 (472)
Q Consensus 112 -----~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g 186 (472)
+|++++++||+|||.+|+.+++..+. .+.+++|++||++||.|+++.+.+.....++++.++.++
T Consensus 617 ~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~ 686 (1147)
T PRK10689 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRF 686 (1147)
T ss_pred hcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence 89999999999999999888776542 367899999999999999999998777778888888888
Q ss_pred cchHHHHHHHh----cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecc
Q 012059 187 DAMARQVYRIQ----QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSA 261 (472)
Q Consensus 187 ~~~~~~~~~~~----~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SA 261 (472)
.+..++...+. ..++|+|+||+.+ .....+.+++++|+||+|++. +. . ...++.+ .+.++++|||
T Consensus 687 ~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG---~~-~-~e~lk~l~~~~qvLl~SA 756 (1147)
T PRK10689 687 RSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFG---VR-H-KERIKAMRADVDILTLTA 756 (1147)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcc---hh-H-HHHHHhcCCCCcEEEEcC
Confidence 77666554332 3589999999643 234567889999999999973 22 2 2334444 6789999999
Q ss_pred cccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHh
Q 012059 262 TISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAIS 341 (472)
Q Consensus 262 T~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~ 341 (472)
|+.+....++...+.++..+...... ...+.+.............++..+ ..+++++|||++...++.+++.|.
T Consensus 757 Tpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~ 830 (1147)
T PRK10689 757 TPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLA 830 (1147)
T ss_pred CCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHH
Confidence 98877777777777777766543322 122444333322222223333333 235689999999999999999998
Q ss_pred hhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCC-CCHhHHHHhhcccccCCCcc
Q 012059 342 VTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRASQMGDEG 419 (472)
Q Consensus 342 ~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p-~s~~~~~Qr~GR~~R~g~~g 419 (472)
+.. +.++..+||+|++.+|++++..|++|+++|||||+++++|+|+|++++||..+.. .+..+|.||+||+||.|+.|
T Consensus 831 ~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g 910 (1147)
T PRK10689 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 (1147)
T ss_pred HhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce
Confidence 432 6789999999999999999999999999999999999999999999999965543 35678999999999999999
Q ss_pred eEEEEEcCCC--hHHHHHHHHH---HHHcCCCCCHHHHhchhhc
Q 012059 420 TAIVFVNEEN--KNLFQELVDI---LKSSGAGIPRELINSRYTV 458 (472)
Q Consensus 420 ~~~~~~~~~~--~~~~~~l~~~---l~~~~~~~~~~l~~~~~~~ 458 (472)
.|++++.... .+...+-++. ....|..+--...+++.+.
T Consensus 911 ~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg 954 (1147)
T PRK10689 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 (1147)
T ss_pred EEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC
Confidence 9999987542 1222222333 3334557777777777664
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.6e-43 Score=359.17 Aligned_cols=349 Identities=17% Similarity=0.217 Sum_probs=256.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHhhHhcC------CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 84 KLLQNIEAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 84 ~i~~~l~~~g~~~~~~~Q~~~i~~~~~~------~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.+.+.+...+| +||+.|.++++.++++ .+.+++||||||||++|++|++..+. .+.+++|++|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----------~g~qvlilaP 292 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----------AGYQVALMAP 292 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----------cCCcEEEECC
Confidence 34456677899 7999999999999865 36899999999999999999988763 3678999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH---HHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 012059 158 TRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR---QVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 233 (472)
Q Consensus 158 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h 233 (472)
|++||.|+++.+++++..+++++..++|+....+ ....+.. .++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 293 T~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQH 367 (630)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechh
Confidence 9999999999999999888899999999877554 2333333 48999999987643 3457889999999999
Q ss_pred hhhhcCcHHHHHHHHHhCC---CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHH
Q 012059 234 CMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 310 (472)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (472)
++... +...+..... .+++++||||+.+....+......+...+.. .......+.... ... .....++
T Consensus 368 ~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~--~p~~r~~i~~~~--~~~-~~~~~~~ 438 (630)
T TIGR00643 368 RFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDE--LPPGRKPITTVL--IKH-DEKDIVY 438 (630)
T ss_pred hccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeecc--CCCCCCceEEEE--eCc-chHHHHH
Confidence 87432 2223333333 7899999999765443332211112111111 111112232222 222 2234555
Q ss_pred HHHHhcCCCCCCEEEEECCch--------hHHHHHHHHhhh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 012059 311 DILMSKQHFTPPAVVYVGSRL--------GADLLSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 381 (472)
Q Consensus 311 ~~l~~~~~~~~~~lIf~~~~~--------~~~~l~~~L~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 381 (472)
..+.+....+.+++|||+..+ .++.+++.|... .+..+..+||+|++++|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 555554445678999998763 455667777633 36789999999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEecCCC-CHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhh
Q 012059 382 GRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYT 457 (472)
Q Consensus 382 ~~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~ 457 (472)
++|+|+|++++||+++.|. +..+|.||+||+||.|..|.|++++.....+...+-++.+.+....+.-...+++.+
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~R 595 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELR 595 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcC
Confidence 9999999999999999986 678899999999999999999999954444444455567776666655444555544
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-44 Score=346.25 Aligned_cols=330 Identities=25% Similarity=0.376 Sum_probs=254.0
Q ss_pred HHHH-HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 87 QNIE-AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 87 ~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
..|+ -+||..+++-|.++|..+++|+|+++..|||+||++||.+|++-. .+.+|||+|..+|....
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CCCEEEECchHHHHHHH
Confidence 3343 359999999999999999999999999999999999999999853 33699999999998877
Q ss_pred HHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC--
Q 012059 166 EEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-- 239 (472)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-- 239 (472)
.+.++.. |+.+.++.+..+..+... .+.. ..++++-+||++..-...+.+.-..+.++||||||++.+||
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCc
Confidence 7766665 466777777655444332 2333 37999999999854333333335568899999999999997
Q ss_pred cHHHHHHHH---HhCCCCceEeecccccHHHHHHHhhhcC-CcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHh
Q 012059 240 FRDQVMQIF---RAISLPQILMYSATISQEVEKMSSSISK-DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS 315 (472)
Q Consensus 240 ~~~~~~~i~---~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 315 (472)
|++.+..+- ..++++.++++|||.++.+...+...+. ....+.......++-... . .........+. ++..
T Consensus 150 FRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~--v--~~~~~~~~q~~-fi~~ 224 (590)
T COG0514 150 FRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALK--V--VEKGEPSDQLA-FLAT 224 (590)
T ss_pred cCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhh--h--hhcccHHHHHH-HHHh
Confidence 877666654 4558899999999999888765554432 221122222222111111 1 11111222222 3332
Q ss_pred -cCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEE
Q 012059 316 -KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI 394 (472)
Q Consensus 316 -~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI 394 (472)
.....+..||||.|+..++.++..|. ..|+.+..+|+||+.++|+.+.+.|..++.+|+|||.++++|||.|++++||
T Consensus 225 ~~~~~~~~GIIYc~sRk~~E~ia~~L~-~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 225 VLPQLSKSGIIYCLTRKKVEELAEWLR-KNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred hccccCCCeEEEEeeHHhHHHHHHHHH-HCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE
Confidence 23445579999999999999999999 6699999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHH
Q 012059 395 IFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 439 (472)
Q Consensus 395 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 439 (472)
||+.|.|++.|.|-+|||||+|....|++|+++.|....+.+++.
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999997766665555
No 52
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-45 Score=311.04 Aligned_cols=342 Identities=30% Similarity=0.530 Sum_probs=295.4
Q ss_pred eCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhccc
Q 012059 65 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 144 (472)
Q Consensus 65 ~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~ 144 (472)
+|..+..-.+.|.++-|.+++++++-.+||..|..+|.++||...-|-+++++|..|.|||.+|.+.-++.+.-
T Consensus 33 kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------ 106 (387)
T KOG0329|consen 33 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------ 106 (387)
T ss_pred cCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------
Confidence 34444444567888999999999999999999999999999999999999999999999999999998887532
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCC-CeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 145 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 145 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
......+|++|.||+||-|+.+++.+|.+..+ +++.+.+||.........+.+.++|+|+||++++.+..+..+++++
T Consensus 107 -v~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 107 -VDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred -CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhh
Confidence 13356799999999999999999999998876 8899999999988888888888999999999999999999999999
Q ss_pred eeEEEEeccchhhhc-CcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCC-CCCccceeEEEEEe
Q 012059 224 IRMFVLDEVDCMLQR-GFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP-NMPNKAVKQLAIWV 300 (472)
Q Consensus 224 ~~~iVvDE~h~~~~~-~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 300 (472)
++.+|+|||+.|++. ..+..+.++++.. ...|+.++|||++++++...+.++.+|..+.+... ......++|++...
T Consensus 186 vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkL 265 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKL 265 (387)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhh
Confidence 999999999998754 3578888888887 66889999999999999999999999998888765 55677788898888
Q ss_pred cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 012059 301 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 380 (472)
Q Consensus 301 ~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 380 (472)
...+|...+.++|.... -..++||+.+... |. | ..+ +|||+.
T Consensus 266 ke~eKNrkl~dLLd~Le--FNQVvIFvKsv~R-------l~-------------------------f---~kr-~vat~l 307 (387)
T KOG0329|consen 266 KENEKNRKLNDLLDVLE--FNQVVIFVKSVQR-------LS-------------------------F---QKR-LVATDL 307 (387)
T ss_pred hhhhhhhhhhhhhhhhh--hcceeEeeehhhh-------hh-------------------------h---hhh-hHHhhh
Confidence 88888888888886543 2469999988654 10 2 123 889999
Q ss_pred ccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC-ChHHHHHHHHHHHHcCCCCCHHH
Q 012059 381 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSSGAGIPREL 451 (472)
Q Consensus 381 ~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 451 (472)
++||+|+-.++.|+|||.|.+.++|.||+|||||.|.+|.++.|++.. +...+..+.+-.+....++|+++
T Consensus 308 fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 308 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred hccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 999999999999999999999999999999999999999999999764 67778888887778888888873
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.4e-41 Score=362.51 Aligned_cols=306 Identities=19% Similarity=0.242 Sum_probs=222.0
Q ss_pred EEccCCCCcchhhHHHHHHHHhhhhhcc---cCCCCCceEEEEcCCHHHHHHHHHHHHHHh------------cCCCCeE
Q 012059 116 VSANTGSGKTASFLVPVISQCANIRLHH---SQNQKNPLAMVLTPTRELCIQVEEQAKLLG------------KGLPFKT 180 (472)
Q Consensus 116 v~a~TGsGKT~~~~l~~~~~l~~~~~~~---~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~------------~~~~~~~ 180 (472)
|+||||||||++|.+|++..+....... .....+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532110 011246789999999999999999886421 1246888
Q ss_pred EEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC-CCCCCCeeEEEEeccchhhhcCcHHH----HHHHHHhC-CCC
Q 012059 181 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQ----VMQIFRAI-SLP 254 (472)
Q Consensus 181 ~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~-~~~~~~~~~iVvDE~h~~~~~~~~~~----~~~i~~~~-~~~ 254 (472)
...+|+....+....+.+.++|+|+||++|..++.++ ...++++++|||||+|.+.+..++.. +..+...+ ...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998888776667778999999999999887653 34689999999999999987544443 33443333 468
Q ss_pred ceEeecccccHHHHHHHhhhcCC-cEEEEeCCCCCCccceeEEEEEecchh--------------------HHHHHHHHH
Q 012059 255 QILMYSATISQEVEKMSSSISKD-IVVVSVGKPNMPNKAVKQLAIWVESNK--------------------KKQKLFDIL 313 (472)
Q Consensus 255 ~~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~l 313 (472)
|+|++|||+++ ..++++++... ++.+.. ........+.. ........ ....+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 56777766543 444432 22111112221 11111100 000111111
Q ss_pred HhcCCCCCCEEEEECCchhHHHHHHHHhhhcC--------------------------------CeEEEEcCCCCHHHHH
Q 012059 314 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTG--------------------------------MKALSIHGEKPMKERR 361 (472)
Q Consensus 314 ~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~--------------------------------~~~~~~~~~~~~~~r~ 361 (472)
......+.++||||||+..|+.++..|.+... ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 11122346899999999999999998874211 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCC-CcceEEEE
Q 012059 362 EIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG-DEGTAIVF 424 (472)
Q Consensus 362 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~ 424 (472)
.+++.|++|++++||||+++++|||++++++||+++.|.+..+|+||+||+||.. ..+.++++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 9999999999999999999999999999999999999999999999999999962 23445533
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.1e-41 Score=345.34 Aligned_cols=336 Identities=21% Similarity=0.289 Sum_probs=264.1
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 79 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 79 ~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
..+++.+.+.+...|+.++++.|..++...+ +++|++|++|||||||+.+++.++..+.+ .+.+++++||
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~---------~~~k~vYivP 84 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE---------GGGKVVYIVP 84 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh---------cCCcEEEEeC
Confidence 3477888888888899899998888887765 66999999999999999999999998875 2678999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 012059 158 TRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 237 (472)
Q Consensus 158 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~ 237 (472)
+++||.+.++.++++ ..+++++...+|+..... +...+++|+|+|||++..++.+....+.++++||+||+|.+.+
T Consensus 85 lkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 85 LKALAEEKYEEFSRL-EELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred hHHHHHHHHHHhhhH-HhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCC
Confidence 999999999999944 567899999999877554 2336699999999999999988777788999999999999988
Q ss_pred cCcHHHHHHHHHhC----CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCC-CccceeEEEEEecc------hhHH
Q 012059 238 RGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM-PNKAVKQLAIWVES------NKKK 306 (472)
Q Consensus 238 ~~~~~~~~~i~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~------~~~~ 306 (472)
....+.++.+..++ ...+++++|||+|+ ..+++.++..++.......... ......+.+..... ....
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 76666666666655 45799999999999 7888888887766322222211 11111222222221 1234
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh------------------------------------cCCeEEE
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT------------------------------------TGMKALS 350 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~------------------------------------~~~~~~~ 350 (472)
..++.++......++++||||+|+..+...++.+... ....+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 5566666666677889999999999998888888710 0123568
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ec-----CCCCHhHHHHhhcccccCCCc--c
Q 012059 351 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-----MPNSIKEYVHQIGRASQMGDE--G 419 (472)
Q Consensus 351 ~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~-----~p~s~~~~~Qr~GR~~R~g~~--g 419 (472)
+|++++.++|..+.+.|+.|+++||+||++++.|+|+|.-.+||- |+ .+-+..++.||+|||||.|-. |
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 999999999999999999999999999999999999997655552 56 455788999999999999954 7
Q ss_pred eEEEEEcCC
Q 012059 420 TAIVFVNEE 428 (472)
Q Consensus 420 ~~~~~~~~~ 428 (472)
.++++.+..
T Consensus 400 ~~~i~~~~~ 408 (766)
T COG1204 400 EAIILATSH 408 (766)
T ss_pred cEEEEecCc
Confidence 777777443
No 55
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8e-40 Score=303.71 Aligned_cols=323 Identities=22% Similarity=0.239 Sum_probs=237.7
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.-+++.||.......+.+ |++++.|||.|||+++++.+..++.. .++ ++|+++||+.|+.|..+.|.++.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~--------~~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW--------FGG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh--------cCC-eEEEecCCchHHHHHHHHHHHHh
Confidence 347889999988888765 99999999999999998888887765 334 89999999999999999999987
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHH-HHHhCC
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ-IFRAIS 252 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~-i~~~~~ 252 (472)
.-.+..++.++|.....+ ........+|+|+||+.+.+-+..+..++.++.++||||||+.....-+..+.+ .++.-.
T Consensus 83 ~ip~~~i~~ltGev~p~~-R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 83 GIPEDEIAALTGEVRPEE-REELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred CCChhheeeecCCCChHH-HHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 654455666666555443 344445689999999999999999999999999999999999764433334443 555558
Q ss_pred CCceEeecccccHH---HHHHHhhhcCCcEEEEeCCCCCCcc--------------------------------------
Q 012059 253 LPQILMYSATISQE---VEKMSSSISKDIVVVSVGKPNMPNK-------------------------------------- 291 (472)
Q Consensus 253 ~~~~i~~SAT~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------------------- 291 (472)
++.++++|||+..+ +.+....+.-..+.+......-...
T Consensus 162 ~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 162 NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999995322 2222222222222221100000000
Q ss_pred --------------------------------------------------------cee---------------------
Q 012059 292 --------------------------------------------------------AVK--------------------- 294 (472)
Q Consensus 292 --------------------------------------------------------~~~--------------------- 294 (472)
.+.
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a 321 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAA 321 (542)
T ss_pred cCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHH
Confidence 000
Q ss_pred -----------------EEEEEecchhHHHHHHHHHHhcC--CCCCCEEEEECCchhHHHHHHHHhhhcCCeEE-E----
Q 012059 295 -----------------QLAIWVESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-S---- 350 (472)
Q Consensus 295 -----------------~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~-~---- 350 (472)
.....-....|...+.+++.+.. ..+.++|||++.+++++.+..+|. ..+..+. .
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~-~~~~~~~~rFiGQ 400 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLK-KIGIKARVRFIGQ 400 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHH-hcCCcceeEEeec
Confidence 00000001123334444444422 345689999999999999999998 5555542 2
Q ss_pred ----EcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEc
Q 012059 351 ----IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 426 (472)
Q Consensus 351 ----~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 426 (472)
...||++.++.++++.|++|+++|||||+++++|+|+|.++.||+|++..|...++||.||+||. +.|.+++++.
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEe
Confidence 22579999999999999999999999999999999999999999999999999999999999997 7899999999
Q ss_pred CCC
Q 012059 427 EEN 429 (472)
Q Consensus 427 ~~~ 429 (472)
+..
T Consensus 480 ~gt 482 (542)
T COG1111 480 EGT 482 (542)
T ss_pred cCc
Confidence 874
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.1e-40 Score=331.59 Aligned_cols=312 Identities=17% Similarity=0.173 Sum_probs=228.7
Q ss_pred HHHHHHHhhHhcCCcEEEEccCCCCcchh---------hHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 99 PVQMQAIPSALSGKSLLVSANTGSGKTAS---------FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 99 ~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~---------~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
.+|.++++.+++++++++.|+||||||.+ |++|.+..+.... ......++++++||++||.|+...+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~----~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID----PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc----cccCCcEEEEECcHHHHHHHHHHHH
Confidence 47999999999999999999999999986 3334444332100 1124568999999999999999888
Q ss_pred HHHhcC---CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHH
Q 012059 170 KLLGKG---LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 246 (472)
Q Consensus 170 ~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~ 246 (472)
...... .+..+...+||... ..........+|+++|++. ....+.++++||+||||++...+ ..+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHH
Confidence 765433 24567788888763 2222223467999999652 11247789999999999987664 44555
Q ss_pred HHHhC--CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecc---------hhHHHHHHHHHHh
Q 012059 247 IFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES---------NKKKQKLFDILMS 315 (472)
Q Consensus 247 i~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~ 315 (472)
+++.. ...|+++||||++.++..+ ..++.++..+..... ....+++.+..... ......+...+..
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 55544 2358999999999888776 466777776665432 22335554432210 1112233444433
Q ss_pred cC-CCCCCEEEEECCchhHHHHHHHHhhhc-CCeEEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEeccccccCCCCCCcE
Q 012059 316 KQ-HFTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSF-LVGEVPVIVATGILGRGVELLGVRQ 392 (472)
Q Consensus 316 ~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~Gidi~~~~~ 392 (472)
.. ..++.+|||++++.+++.+++.|.+.. ++.+..+||++++. ++.++.| ++|+.+|||||+++++|||+|++++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 234689999999999999999998442 68999999999974 4667777 6899999999999999999999999
Q ss_pred EEEec---CCC---------CHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 393 VIIFD---MPN---------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 393 VI~~~---~p~---------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
||++| .|. |.++|.||+||+||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 555 788999999999999 78999999998764
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=311.64 Aligned_cols=337 Identities=23% Similarity=0.327 Sum_probs=270.6
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
...+++.+++++.+-|+..|++++.|+|.-++.. ++.|+|.+|.++|+||||++..++-+..++. .+.+.
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------~g~Km 264 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------GGKKM 264 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------CCCeE
Confidence 4456788999999999999999999999999987 5699999999999999999999988888765 57889
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHH----HHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEE
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV----YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 228 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iV 228 (472)
|+++|..+||+|-+++++.-...+++.+..-+|..-..... ......+||+|+|++-+..++... ..+.+++.||
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVV 343 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVV 343 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEE
Confidence 99999999999999999987788888887777653322211 112235899999999999888776 5789999999
Q ss_pred EeccchhhhcCcHHHHHHHHH----hCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEec-ch
Q 012059 229 LDEVDCMLQRGFRDQVMQIFR----AISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE-SN 303 (472)
Q Consensus 229 vDE~h~~~~~~~~~~~~~i~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~ 303 (472)
+||+|.+-+...++.+.-++. .++..|+|.+|||..+ -.++++.+....+...-. +..++.+..++. ..
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~~R-----PVplErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYDER-----PVPLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeecCC-----CCChhHeeeeecCch
Confidence 999999877554443333333 3388999999999987 566788887777655332 222444555555 55
Q ss_pred hHHHHHHHHHHh------cCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012059 304 KKKQKLFDILMS------KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA 377 (472)
Q Consensus 304 ~~~~~l~~~l~~------~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 377 (472)
+|...+..+... .....+++|||++|+..|..+++.|. ..|+++..+|++++..+|..+...|.++++.++|+
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~-~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVT 496 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT-GKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVT 496 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh-cCCcccccccCCCcHHHHHHHHHHHhcCCcceEee
Confidence 565555555543 33456799999999999999999998 66999999999999999999999999999999999
Q ss_pred eccccccCCCCCCcEEEE----ecC-CCCHhHHHHhhcccccCCCc--ceEEEEEcCC
Q 012059 378 TGILGRGVELLGVRQVII----FDM-PNSIKEYVHQIGRASQMGDE--GTAIVFVNEE 428 (472)
Q Consensus 378 T~~~~~Gidi~~~~~VI~----~~~-p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 428 (472)
|.+++.|+|+|+- .||+ ++. .-|+.+|.||.|||||.+.+ |++|+++.+.
T Consensus 497 TAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 497 TAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999965 4443 333 33899999999999999864 9999999765
No 58
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.6e-39 Score=346.05 Aligned_cols=302 Identities=22% Similarity=0.295 Sum_probs=236.9
Q ss_pred HHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 87 QNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 87 ~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
+.+.+ .|+ .|+++|..+++.++.|+|++++||||+|||. |.+++...+.. .+.+++||+||++|+.|+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---------~g~~alIL~PTreLa~Qi 139 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK---------KGKKSYIIFPTRLLVEQV 139 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeccHHHHHHH
Confidence 34433 477 8999999999999999999999999999996 55565544322 367899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCcc-----hHHHHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhh--
Q 012059 166 EEQAKLLGKGLPFKTALVVGGDA-----MARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-- 237 (472)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~-- 237 (472)
++.++.++...++.+..++|+.. ..+....+.. .++|+|+||++|.+.+. .+....++++|+||||++++
T Consensus 140 ~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 140 VEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcc
Confidence 99999999888888877777654 2223334443 58999999999998876 34556699999999999986
Q ss_pred ---------cCcH-HHHHHHHHhCC-------------------------CCceEeecccccHH-HHHHHhhhcCCcEEE
Q 012059 238 ---------RGFR-DQVMQIFRAIS-------------------------LPQILMYSATISQE-VEKMSSSISKDIVVV 281 (472)
Q Consensus 238 ---------~~~~-~~~~~i~~~~~-------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~i 281 (472)
.||. ..+..++..++ ..|++++|||+++. +.. .++.++..+
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~ 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGF 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceE
Confidence 5674 56666665553 57899999999864 332 233444455
Q ss_pred EeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh---HHHHHHHHhhhcCCeEEEEcCCCCHH
Q 012059 282 SVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG---ADLLSNAISVTTGMKALSIHGEKPMK 358 (472)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~ 358 (472)
.++.......++.+.+.... .+...+..++... +.++||||+++.. ++.+++.|. ..|+++..+||+|
T Consensus 295 ~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~-~~gi~v~~~hg~l--- 365 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLE-DLGINAELAISGF--- 365 (1176)
T ss_pred EecCcccccCCceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHH-HCCCcEEEEeCcH---
Confidence 56655555666777766554 4566677776543 2479999999887 999999998 7899999999999
Q ss_pred HHHHHHHHHhcCCCcEEEE----eccccccCCCCC-CcEEEEecCCC------CHhHHHHhhcccccC
Q 012059 359 ERREIMRSFLVGEVPVIVA----TGILGRGVELLG-VRQVIIFDMPN------SIKEYVHQIGRASQM 415 (472)
Q Consensus 359 ~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-~~~VI~~~~p~------s~~~~~Qr~GR~~R~ 415 (472)
.+.++.|++|+++|||| |++++||||+|+ +++|||||.|. ....|.||+||+...
T Consensus 366 --~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 366 --ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred --HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 23459999999999999 689999999999 89999999998 678899999999743
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3e-39 Score=320.05 Aligned_cols=319 Identities=19% Similarity=0.225 Sum_probs=250.6
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|..+++.++.|+ |..+.||+|||++|.+|++..... ++.++|++||++||.|.++++..
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~----------G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA----------GLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc----------CCeEEEEcCcHHHHHHHHHHHHH
Confidence 455 89999999999999998 999999999999999999987543 67899999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcCC-------------------------CCCCCee
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD-------------------------IELDDIR 225 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~~-------------------------~~~~~~~ 225 (472)
+...+++++.+++||.... .+....+++|+++|...| .+++..+- .....+.
T Consensus 167 l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 9999999999999997643 355567899999999887 44443221 1134578
Q ss_pred EEEEeccchhhhc------------------CcHHHHHHHHHhC------------------------------------
Q 012059 226 MFVLDEVDCMLQR------------------GFRDQVMQIFRAI------------------------------------ 251 (472)
Q Consensus 226 ~iVvDE~h~~~~~------------------~~~~~~~~i~~~~------------------------------------ 251 (472)
+.||||+|.++-. .+......+...+
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 9999999986400 0000011110000
Q ss_pred ---------------------C----------------------------------------------------------
Q 012059 252 ---------------------S---------------------------------------------------------- 252 (472)
Q Consensus 252 ---------------------~---------------------------------------------------------- 252 (472)
.
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 0
Q ss_pred ---CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECC
Q 012059 253 ---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGS 329 (472)
Q Consensus 253 ---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~ 329 (472)
-.++.+||||.+....++.+.+..+++.+....+... ...+.+.++....|...|...+......+.++||||++
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0156788999988888888888888777655544322 23334455667778888888887755556789999999
Q ss_pred chhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---CCc-----EEEEecCCCC
Q 012059 330 RLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---GVR-----QVIIFDMPNS 401 (472)
Q Consensus 330 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---~~~-----~VI~~~~p~s 401 (472)
...++.++..|. ..|+.+..+||+++ +|+..+..|..+...|+|||++++||+||+ ++. +||+++.|.|
T Consensus 483 ~~~se~L~~~L~-~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s 559 (656)
T PRK12898 483 VAASERLSALLR-EAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS 559 (656)
T ss_pred HHHHHHHHHHHH-HCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC
Confidence 999999999998 78999999999866 455555666666667999999999999999 666 9999999999
Q ss_pred HhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 402 IKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 402 ~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
...|.||+||+||.|.+|.+++|++..|.
T Consensus 560 ~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 560 ARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999999998764
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.3e-39 Score=325.06 Aligned_cols=306 Identities=15% Similarity=0.162 Sum_probs=219.9
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
...|+++|.++++.++.+++.++++|||+|||+++... ...+.. ....++||++||++|+.||.+.+.++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~--------~~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLE--------NYEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHh--------cCCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999975432 222222 123479999999999999999999987
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-C
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-S 252 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~ 252 (472)
......+..+.+|.... .+.+|+|+||+++.+... ..+.++++||+||||++.... +..++..+ +
T Consensus 183 ~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~ 248 (501)
T PHA02558 183 LFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDN 248 (501)
T ss_pred cccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhc
Confidence 54334455666665432 347899999999876432 246789999999999997543 45666666 4
Q ss_pred CCceEeecccccHHHHHHH--hhhcCCcEEEEeCCC------C------------CCcc---ce-----eEEE-EEecch
Q 012059 253 LPQILMYSATISQEVEKMS--SSISKDIVVVSVGKP------N------------MPNK---AV-----KQLA-IWVESN 303 (472)
Q Consensus 253 ~~~~i~~SAT~~~~~~~~~--~~~~~~~~~i~~~~~------~------------~~~~---~~-----~~~~-~~~~~~ 303 (472)
..++++||||+.+...... ..++.+. ...+... . .... .. .... ......
T Consensus 249 ~~~~lGLTATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (501)
T PHA02558 249 CKFKFGLTGSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHT 327 (501)
T ss_pred cceEEEEeccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccH
Confidence 6789999999964321110 1111111 1110000 0 0000 00 0000 001112
Q ss_pred hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-cccc
Q 012059 304 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT-GILG 382 (472)
Q Consensus 304 ~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~ 382 (472)
.+...+..++......+.+++|||.+.++++.+++.|. ..+.++..+||+++.++|..+++.|++|+..||||| ++++
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~-~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLK-KVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHH-HcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 23333444444444456789999999999999999998 678999999999999999999999999999999998 8999
Q ss_pred ccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcce-EEEE
Q 012059 383 RGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT-AIVF 424 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~-~~~~ 424 (472)
+|+|+|++++||+++++.|...|+||+||++|.+..+. |.++
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999999999999999999999876543 4433
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.4e-39 Score=350.43 Aligned_cols=329 Identities=18% Similarity=0.239 Sum_probs=248.4
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 83 QKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 83 ~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.++.+.+++ .|| .|+++|.++++.+++|+++++.||||+|||++++++++... ..+.++|||+||++|
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~----------~~g~~aLVl~PTreL 134 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA----------LKGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH----------hcCCeEEEEECHHHH
Confidence 344556665 799 69999999999999999999999999999996555554331 135689999999999
Q ss_pred HHHHHHHHHHHhcCC--CCeEEEEEcCcchHHHH---HHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchh
Q 012059 162 CIQVEEQAKLLGKGL--PFKTALVVGGDAMARQV---YRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 235 (472)
Q Consensus 162 ~~q~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~---~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~ 235 (472)
+.|+.+.++.++... ++.+..++|+.+..++. ..+.. .++|+|+||++|.+.+... ...+++++|+||||++
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceec
Confidence 999999999998765 45667788887766543 23444 4899999999998776542 1267899999999999
Q ss_pred hh-----------cCcHHHHHH----HHH----------------------hC-CCCc-eEeecccccHHHHHHHhhhcC
Q 012059 236 LQ-----------RGFRDQVMQ----IFR----------------------AI-SLPQ-ILMYSATISQEVEKMSSSISK 276 (472)
Q Consensus 236 ~~-----------~~~~~~~~~----i~~----------------------~~-~~~~-~i~~SAT~~~~~~~~~~~~~~ 276 (472)
++ .+|.+++.. ++. .+ ..++ .+++|||++.... . ..++.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhh
Confidence 86 477777754 322 12 2334 5679999985311 1 12345
Q ss_pred CcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh---HHHHHHHHhhhcCCeEEEEcC
Q 012059 277 DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG---ADLLSNAISVTTGMKALSIHG 353 (472)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~---~~~l~~~L~~~~~~~~~~~~~ 353 (472)
++..+.++.......++.+.+.......+ ..+..++... +..+||||+++.. ++.++..|. ..|+++..+||
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~-~~Gi~a~~~h~ 365 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLL-EDGFKIELVSA 365 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHH-HCCCeEEEecc
Confidence 66667776666566667777665544433 5677777554 3579999999875 589999998 77999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEe----ccccccCCCCC-CcEEEEecCCC---CHhHHHHhh-------------ccc
Q 012059 354 EKPMKERREIMRSFLVGEVPVIVAT----GILGRGVELLG-VRQVIIFDMPN---SIKEYVHQI-------------GRA 412 (472)
Q Consensus 354 ~~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-~~~VI~~~~p~---s~~~~~Qr~-------------GR~ 412 (472)
+ |...++.|++|+++||||| ++++||||+|+ +++|||||.|. +.+.|.|.. ||+
T Consensus 366 ~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a 440 (1638)
T PRK14701 366 K-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEE 440 (1638)
T ss_pred h-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhh
Confidence 5 8889999999999999999 58999999999 99999999999 877666654 999
Q ss_pred ccCCCcceEEEEEcCCChHHHHHH
Q 012059 413 SQMGDEGTAIVFVNEENKNLFQEL 436 (472)
Q Consensus 413 ~R~g~~g~~~~~~~~~~~~~~~~l 436 (472)
||.|..+.+++.+...+...++.+
T Consensus 441 ~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 441 LKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred cccCCcchhHHHhHHHHHHHHHHH
Confidence 999988777755444444444333
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.7e-38 Score=327.40 Aligned_cols=303 Identities=18% Similarity=0.249 Sum_probs=228.2
Q ss_pred HHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH-HHhcCCCCe
Q 012059 101 QMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFK 179 (472)
Q Consensus 101 Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~ 179 (472)
-.+.+..+.++++++++|+||||||++|.++++.... .+.+++|+.|+|++|.|+++.+. .++...+..
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 3455566668899999999999999999999887641 24579999999999999999875 455555555
Q ss_pred EEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch-hhhcCcHH-HHHHHHHhC-CCCce
Q 012059 180 TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-MLQRGFRD-QVMQIFRAI-SLPQI 256 (472)
Q Consensus 180 ~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~-~~~~~~~~-~~~~i~~~~-~~~~~ 256 (472)
+...+.+.. ....+.+|+|+|++.|.+++... ..+.++++|||||+|+ +++.++.- .+..+...+ +..++
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 655555433 12345799999999999988764 4689999999999995 66655432 233444444 67899
Q ss_pred EeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHH-----HHHHHHHHhcCCCCCCEEEEECCch
Q 012059 257 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK-----QKLFDILMSKQHFTPPAVVYVGSRL 331 (472)
Q Consensus 257 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~~~lIf~~~~~ 331 (472)
++||||++... + ..++.+...+....... .+++.+.......+. ..+..++. ...+.+|||+++..
T Consensus 150 IlmSATl~~~~--l-~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~~ 220 (819)
T TIGR01970 150 LAMSATLDGER--L-SSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALA---SETGSILVFLPGQA 220 (819)
T ss_pred EEEeCCCCHHH--H-HHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHH---hcCCcEEEEECCHH
Confidence 99999999754 2 34554444444332221 244444433332221 12223332 23568999999999
Q ss_pred hHHHHHHHHhhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCC---------
Q 012059 332 GADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN--------- 400 (472)
Q Consensus 332 ~~~~l~~~L~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~--------- 400 (472)
+++.++..|.+. .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||||++++||+++.|.
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g 300 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTG 300 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccC
Confidence 999999999843 378899999999999999999999999999999999999999999999999999875
Q ss_pred ---------CHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 401 ---------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 401 ---------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
|-.+|.||.||+||. .+|.||.++++.+.
T Consensus 301 ~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 301 ITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345689999999999 79999999997754
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.5e-38 Score=305.87 Aligned_cols=301 Identities=17% Similarity=0.157 Sum_probs=207.7
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch---
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM--- 189 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~--- 189 (472)
++++.||||||||++|+++++..+.. ..+.+++|++|+++|+.|+++.+..++.. .+..++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 47999999999999999999987543 34678999999999999999999987432 23333333221
Q ss_pred --------HHH-HHHH------hcCCCEEEeChHHHHHHHHcCCC----CC--CCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 190 --------ARQ-VYRI------QQGVELIVGTPGRLIDLLMKHDI----EL--DDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 190 --------~~~-~~~~------~~~~~I~i~Tp~~l~~~~~~~~~----~~--~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
... .... ....+|+++||+++...+..... .+ -..++||+||+|.+.+.++.. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 000 0111 12367999999999887665211 11 123789999999998765333 55555
Q ss_pred HhC--CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEec--chhHHHHHHHHHHhcCCCCCCEE
Q 012059 249 RAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE--SNKKKQKLFDILMSKQHFTPPAV 324 (472)
Q Consensus 249 ~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~l 324 (472)
..+ ...|++++|||+|+.+..+................... ....+.+.... ...+...+..++.. ...++++|
T Consensus 149 ~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~l 226 (358)
T TIGR01587 149 EVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIA 226 (358)
T ss_pred HHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHH-hhCCCeEE
Confidence 555 46899999999998777776655433211111111000 00111111111 12233334444432 23456899
Q ss_pred EEECCchhHHHHHHHHhhhc-CCeEEEEcCCCCHHHHHH----HHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCC
Q 012059 325 VYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERRE----IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP 399 (472)
Q Consensus 325 If~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p 399 (472)
|||++++.++.++..|++.. ...+..+||++++.+|.+ +++.|++|+..|||||+++++|+|++ +++||++..|
T Consensus 227 Vf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~ 305 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP 305 (358)
T ss_pred EEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC
Confidence 99999999999999997332 235899999999999976 48899999999999999999999996 7899988877
Q ss_pred CCHhHHHHhhcccccCCCc----ceEEEEEcCCCh
Q 012059 400 NSIKEYVHQIGRASQMGDE----GTAIVFVNEENK 430 (472)
Q Consensus 400 ~s~~~~~Qr~GR~~R~g~~----g~~~~~~~~~~~ 430 (472)
.+.|+||+||+||.|+. |.++++....+.
T Consensus 306 --~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 306 --IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred --HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 78999999999999864 377888776543
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.3e-38 Score=327.37 Aligned_cols=302 Identities=16% Similarity=0.246 Sum_probs=226.9
Q ss_pred HHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH-HHhcCCCCeE
Q 012059 102 MQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFKT 180 (472)
Q Consensus 102 ~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~ 180 (472)
.+.+..+.+++++++.|+||||||++|.+++++... .+.+++|++|||++|.|+++.+. .++...+..+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 345566668899999999999999999888886421 23479999999999999999885 4555566677
Q ss_pred EEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch-hhhcCc-HHHHHHHHHhC-CCCceE
Q 012059 181 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-MLQRGF-RDQVMQIFRAI-SLPQIL 257 (472)
Q Consensus 181 ~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~-~~~~~~-~~~~~~i~~~~-~~~~~i 257 (472)
...+++.... ....+|+|+||++|.+++... ..+.++++|||||+|+ .++..+ ...+..++..+ +..+++
T Consensus 81 Gy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 7777665432 234689999999999988764 4689999999999997 333332 22334455554 678999
Q ss_pred eecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHH-----HHHHHHHhcCCCCCCEEEEECCchh
Q 012059 258 MYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ-----KLFDILMSKQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 258 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~~~lIf~~~~~~ 332 (472)
+||||++... + ..++.+...+...... ..+.+.+.......+.. .+...+. ...+.+|||+++..+
T Consensus 154 lmSATl~~~~--l-~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~~e 224 (812)
T PRK11664 154 IMSATLDNDR--L-QQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLR---QESGSLLLFLPGVGE 224 (812)
T ss_pred EEecCCCHHH--H-HHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHH---hCCCCEEEEcCCHHH
Confidence 9999998642 3 3455444444333221 12444444333333322 2223332 235789999999999
Q ss_pred HHHHHHHHhhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCC----------
Q 012059 333 ADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN---------- 400 (472)
Q Consensus 333 ~~~l~~~L~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~---------- 400 (472)
++.+++.|.+. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||||++++||+++.+.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 99999999842 467899999999999999999999999999999999999999999999999988765
Q ss_pred --------CHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 401 --------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 401 --------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
|-.+|.||.||+||. .+|.||.++++.+.
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999999 69999999997653
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-37 Score=315.32 Aligned_cols=321 Identities=19% Similarity=0.248 Sum_probs=243.2
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
..|. .|+++|..+.+.+..|+ ++.+.||+|||++|++|++...+. ++.++|++||+.||.|.++++.
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~----------G~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE----------GKGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 3466 89999999999888876 999999999999999999866543 6779999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcCC------CCCCCeeEEEEeccchhhhc-----
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQR----- 238 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~~------~~~~~~~~iVvDE~h~~~~~----- 238 (472)
.+...+++++.++.|+....++.. ...+++|+++||+.+ .+++..+- ..+..+.++|+||+|.++-.
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tp 219 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTP 219 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCc
Confidence 999999999999999988433333 335699999999999 55554321 24577899999999997510
Q ss_pred -----------CcHHHHHHHHHhCC---------CC--------------------------------------------
Q 012059 239 -----------GFRDQVMQIFRAIS---------LP-------------------------------------------- 254 (472)
Q Consensus 239 -----------~~~~~~~~i~~~~~---------~~-------------------------------------------- 254 (472)
........+...+. ..
T Consensus 220 liisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~ 299 (790)
T PRK09200 220 LIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLF 299 (790)
T ss_pred eeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHh
Confidence 01111111211110 00
Q ss_pred -----------------------------------------------------------------ceEeecccccHHHHH
Q 012059 255 -----------------------------------------------------------------QILMYSATISQEVEK 269 (472)
Q Consensus 255 -----------------------------------------------------------------~~i~~SAT~~~~~~~ 269 (472)
++.+||+|....-.+
T Consensus 300 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e 379 (790)
T PRK09200 300 KRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKE 379 (790)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHH
Confidence 345566665444444
Q ss_pred HHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEE
Q 012059 270 MSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL 349 (472)
Q Consensus 270 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~ 349 (472)
+.+.+..+.+.+....+... .. .....+.....+...+...+......+.++||||++...++.++..|. ..|+++.
T Consensus 380 ~~~~Y~l~v~~IPt~kp~~r-~d-~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~-~~gi~~~ 456 (790)
T PRK09200 380 FFEVYNMEVVQIPTNRPIIR-ID-YPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLD-EAGIPHN 456 (790)
T ss_pred HHHHhCCcEEECCCCCCccc-cc-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCCEE
Confidence 44444444333322111111 11 112234556677888888887765567899999999999999999998 7899999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC---CCCc-----EEEEecCCCCHhHHHHhhcccccCCCcceE
Q 012059 350 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL---LGVR-----QVIIFDMPNSIKEYVHQIGRASQMGDEGTA 421 (472)
Q Consensus 350 ~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi---~~~~-----~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~ 421 (472)
.+||++.+.++..+...++.| .|+|||++++||+|+ |++. +||+++.|.+...|.||+||+||.|.+|.+
T Consensus 457 ~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 457 LLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred EecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999988888887777766 699999999999999 6898 999999999999999999999999999999
Q ss_pred EEEEcCCCh
Q 012059 422 IVFVNEENK 430 (472)
Q Consensus 422 ~~~~~~~~~ 430 (472)
+.|++..|.
T Consensus 535 ~~~is~eD~ 543 (790)
T PRK09200 535 QFFISLEDD 543 (790)
T ss_pred EEEEcchHH
Confidence 999998764
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4e-37 Score=308.38 Aligned_cols=318 Identities=20% Similarity=0.240 Sum_probs=232.3
Q ss_pred CCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC
Q 012059 97 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 176 (472)
Q Consensus 97 ~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 176 (472)
++|+|.+++..+..++..++.++||+|||++|++|++...+. ++.++|++|+++||.|+++++..+.+.+
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~----------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT----------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc----------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 355555555555544557999999999999999998766543 4469999999999999999999999999
Q ss_pred CCeEEEEEcCcc---hHHHHHHHhcCCCEEEeChHHH-HHHHHc------CCCCCCCeeEEEEeccchhhhcC-------
Q 012059 177 PFKTALVVGGDA---MARQVYRIQQGVELIVGTPGRL-IDLLMK------HDIELDDIRMFVLDEVDCMLQRG------- 239 (472)
Q Consensus 177 ~~~~~~~~~g~~---~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~------~~~~~~~~~~iVvDE~h~~~~~~------- 239 (472)
++.+.+++++.. ..........+++|+++||++| .+++.. ....+..+.++|+||||.++-..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 999988887632 2222333446799999999999 555532 23346789999999999985210
Q ss_pred ---------cHHHHHHHHHhCCC---------------------------------------------------------
Q 012059 240 ---------FRDQVMQIFRAISL--------------------------------------------------------- 253 (472)
Q Consensus 240 ---------~~~~~~~i~~~~~~--------------------------------------------------------- 253 (472)
.......+...+..
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 11111112111100
Q ss_pred -------------------------------------------------------------CceEeecccccHHHHHHHh
Q 012059 254 -------------------------------------------------------------PQILMYSATISQEVEKMSS 272 (472)
Q Consensus 254 -------------------------------------------------------------~~~i~~SAT~~~~~~~~~~ 272 (472)
.++.+||+|......++.+
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 1345556665444444544
Q ss_pred hhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEc
Q 012059 273 SISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIH 352 (472)
Q Consensus 273 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~ 352 (472)
.+..+.+.+....+.... -..-..+.....|...+...+.+....+.++||||++...++.++..|. ..|+++..+|
T Consensus 379 iY~l~v~~IPt~kp~~r~--d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~-~~gi~~~~L~ 455 (762)
T TIGR03714 379 TYSLSVVKIPTNKPIIRI--DYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLL-REGIPHNLLN 455 (762)
T ss_pred HhCCCEEEcCCCCCeeee--eCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHH-HCCCCEEEec
Confidence 443333332221111111 1112345566678888888887766677899999999999999999998 7899999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---------CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEE
Q 012059 353 GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 423 (472)
Q Consensus 353 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---------~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 423 (472)
|++.++++..+...++.| .|+|||++++||+|++ ++.+|++++.|....+ .||+||+||.|.+|.++.
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999998888877777666 6999999999999999 8999999999988766 999999999999999999
Q ss_pred EEcCCCh
Q 012059 424 FVNEENK 430 (472)
Q Consensus 424 ~~~~~~~ 430 (472)
|++..|.
T Consensus 533 ~is~eD~ 539 (762)
T TIGR03714 533 FVSLEDD 539 (762)
T ss_pred EEccchh
Confidence 9998764
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=319.08 Aligned_cols=334 Identities=22% Similarity=0.313 Sum_probs=260.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 160 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~ 160 (472)
....+..++.+.|+..|+.+|.+|+..+.+|+|++|+.+||||||.+|++|++.+++. ....++|+|.||++
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~--------~~~a~AL~lYPtnA 126 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR--------DPSARALLLYPTNA 126 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh--------CcCccEEEEechhh
Confidence 4445678888999999999999999999999999999999999999999999999987 34458999999999
Q ss_pred HHHHHHHHHHHHhcCCC--CeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC----CCCCCeeEEEEeccch
Q 012059 161 LCIQVEEQAKLLGKGLP--FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD----IELDDIRMFVLDEVDC 234 (472)
Q Consensus 161 L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~----~~~~~~~~iVvDE~h~ 234 (472)
||+.+.+.++++....+ ++...+.|.....+......+.++|+++||++|..++.+.. ..+.++++||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 99999999999988877 66666666666655545667889999999999988665432 2356799999999997
Q ss_pred hhhcCcHHHHHHHHHhC--------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEec-----
Q 012059 235 MLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE----- 301 (472)
Q Consensus 235 ~~~~~~~~~~~~i~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----- 301 (472)
.- -.|+..+..+++++ ..+|+|+.|||+.+.- +++..+........+.....+... .....+..
T Consensus 207 Yr-Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~~~~-~~~~~~~p~~~~~ 283 (851)
T COG1205 207 YR-GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSPRGL-RYFVRREPPIREL 283 (851)
T ss_pred cc-ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCCCCc-eEEEEeCCcchhh
Confidence 63 33666666666655 4789999999998844 455555555544433333333322 22222222
Q ss_pred ----chhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHH----HHHhhhcC----CeEEEEcCCCCHHHHHHHHHHHhc
Q 012059 302 ----SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLS----NAISVTTG----MKALSIHGEKPMKERREIMRSFLV 369 (472)
Q Consensus 302 ----~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~----~~L~~~~~----~~~~~~~~~~~~~~r~~~~~~f~~ 369 (472)
.......+-.+.......+-++|+|+.++..++.++ ..+. ..+ ..+..+++++..++|.+++..|+.
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~-~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~ 362 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLV-REGGKLLDAVSTYRAGLHREERRRIEAEFKE 362 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHh-hcchhhhhheeeccccCCHHHHHHHHHHHhc
Confidence 112333333333333445568999999999999996 3333 233 568889999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCCcEEEEecCCC-CHhHHHHhhcccccCCCcceEEEEEc
Q 012059 370 GEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVN 426 (472)
Q Consensus 370 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~ 426 (472)
|+..++++|++++-|+|+-+++.||.++.|. +..++.||.||+||.++.+-.++...
T Consensus 363 g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 363 GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999999999 89999999999999997776666666
No 68
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.9e-38 Score=310.69 Aligned_cols=343 Identities=17% Similarity=0.213 Sum_probs=254.3
Q ss_pred HCCCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
-++|..++.+|++++|.+. ++.|+|||||||||||..|++.++..+.+..........+.++++|+|.++||.++.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 3578899999999999998 778999999999999999999999887753222223346788999999999999999888
Q ss_pred HHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC---CCCCCeeEEEEeccchhhhcCcHHHHHH
Q 012059 170 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD---IELDDIRMFVLDEVDCMLQRGFRDQVMQ 246 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~---~~~~~~~~iVvDE~h~~~~~~~~~~~~~ 246 (472)
.+-...+++.+..++|+....+.. ...++|+|+|||++.-...+.. ..++.+++||+||+|.+-+. .++.++.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 877778899999999988766532 3559999999999965544322 23677999999999977544 4666766
Q ss_pred HHHhC--------CCCceEeecccccHHHHHHHhhhcCCc-EEEEeCCCCCCccceeEEEEEecch---hHH----HHHH
Q 012059 247 IFRAI--------SLPQILMYSATISQEVEKMSSSISKDI-VVVSVGKPNMPNKAVKQLAIWVESN---KKK----QKLF 310 (472)
Q Consensus 247 i~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~---~~~----~~l~ 310 (472)
+..+. ...+++++|||+|+ ..+.+.++..++ .-+........+..+.+.+.-.... ... ....
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 66554 56899999999998 777888776652 2222222222333344444333322 111 1122
Q ss_pred HHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh----------------------cCCeEEEEcCCCCHHHHHHHHHHHh
Q 012059 311 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVT----------------------TGMKALSIHGEKPMKERREIMRSFL 368 (472)
Q Consensus 311 ~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~ 368 (472)
+.+.+....+.+++|||.++..+...++.|.+. .......+|+||..++|..+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 222233345678999999999888888888621 1134567999999999999999999
Q ss_pred cCCCcEEEEeccccccCCCCCCcEEEE----ecCCC------CHhHHHHhhcccccCC--CcceEEEEEcCCChHHHHHH
Q 012059 369 VGEVPVIVATGILGRGVELLGVRQVII----FDMPN------SIKEYVHQIGRASQMG--DEGTAIVFVNEENKNLFQEL 436 (472)
Q Consensus 369 ~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~~p~------s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~l 436 (472)
.|.++||+||.+++.|+|+|+-.++|- ||.-. .+-+.+|.+|||||.+ ..|.++++.+.+....+..+
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 999999999999999999997655553 33322 5678899999999986 45999999988877666555
Q ss_pred HH
Q 012059 437 VD 438 (472)
Q Consensus 437 ~~ 438 (472)
+.
T Consensus 500 l~ 501 (1230)
T KOG0952|consen 500 LT 501 (1230)
T ss_pred Hc
Confidence 54
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.1e-36 Score=303.39 Aligned_cols=319 Identities=21% Similarity=0.243 Sum_probs=243.9
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|..+...+..|+ +..++||+|||++|.+|++...+. +..++|++||+.||.|.++++..
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 465 78999999988887775 999999999999999999644433 34599999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhhc-C----
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQR-G---- 239 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~------~~~~~~~~~iVvDE~h~~~~~-~---- 239 (472)
+.+.+++++.+++|+....+.. ..-.++|+++||++| .+++..+ ...+..+.++|+||+|+++-. .
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~--~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpL 197 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERR--EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPL 197 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHH--HhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHH
Confidence 9999999999999998765433 233589999999999 8888765 345788999999999997621 0
Q ss_pred -----------cHHHHHHHHHhCC---------C----------------------------------------------
Q 012059 240 -----------FRDQVMQIFRAIS---------L---------------------------------------------- 253 (472)
Q Consensus 240 -----------~~~~~~~i~~~~~---------~---------------------------------------------- 253 (472)
.......+.+.+. .
T Consensus 198 iisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~ 277 (745)
T TIGR00963 198 IISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFE 277 (745)
T ss_pred hhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 0000001111100 0
Q ss_pred ---------------------------------------------------------------CceEeecccccHHHHHH
Q 012059 254 ---------------------------------------------------------------PQILMYSATISQEVEKM 270 (472)
Q Consensus 254 ---------------------------------------------------------------~~~i~~SAT~~~~~~~~ 270 (472)
.++.+||+|......++
T Consensus 278 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 357 (745)
T TIGR00963 278 KDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF 357 (745)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH
Confidence 03445566655544445
Q ss_pred HhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEE
Q 012059 271 SSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALS 350 (472)
Q Consensus 271 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~ 350 (472)
.+.+..+.+.+....+..... .....+.....+...+...+.+....+.|+||||++...++.++..|. ..|++...
T Consensus 358 ~~iY~l~vv~IPtnkp~~R~d--~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~-~~gi~~~~ 434 (745)
T TIGR00963 358 EKIYNLEVVVVPTNRPVIRKD--LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLK-ERGIPHNV 434 (745)
T ss_pred HHHhCCCEEEeCCCCCeeeee--CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HcCCCeEE
Confidence 444444444332222211111 111223445567777777776666778899999999999999999998 78999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC-------CcEEEEecCCCCHhHHHHhhcccccCCCcceEEE
Q 012059 351 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG-------VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 423 (472)
Q Consensus 351 ~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~-------~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 423 (472)
+|++ +.+|+..+..|..+...|+|||++++||+||+. .-+||+++.|.|...|.|++||+||.|.+|.+..
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9998 779999999999999999999999999999998 4599999999999999999999999999999999
Q ss_pred EEcCCCh
Q 012059 424 FVNEENK 430 (472)
Q Consensus 424 ~~~~~~~ 430 (472)
|++..|.
T Consensus 513 ~ls~eD~ 519 (745)
T TIGR00963 513 FLSLEDN 519 (745)
T ss_pred EEeccHH
Confidence 9998875
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.8e-36 Score=317.91 Aligned_cols=322 Identities=21% Similarity=0.269 Sum_probs=237.1
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
-++++||.+++..++.+ |+++++|||+|||+++++++...+. ..+.++||++||++|+.|+.+.++.+..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~---------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH---------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH---------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 37899999999988876 9999999999999999888887663 2457899999999999999999998865
Q ss_pred CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHH-HhCCC
Q 012059 175 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF-RAISL 253 (472)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~-~~~~~ 253 (472)
..+..+..+.|+....+ ...+..+.+|+|+||+.+...+......+.++++|||||||++........+...+ ...+.
T Consensus 84 ~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 44456677777655443 34455678999999999988887777788899999999999987554333333333 33366
Q ss_pred CceEeecccccH---HHHHHHhhhcCCcEEEEeCCCC-------------------------------------------
Q 012059 254 PQILMYSATISQ---EVEKMSSSISKDIVVVSVGKPN------------------------------------------- 287 (472)
Q Consensus 254 ~~~i~~SAT~~~---~~~~~~~~~~~~~~~i~~~~~~------------------------------------------- 287 (472)
+.++++|||+.. .+....+.+....+.+......
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 789999999732 2333333322211111100000
Q ss_pred -CC--cc-------------ceeEE-------------------------------------------------------
Q 012059 288 -MP--NK-------------AVKQL------------------------------------------------------- 296 (472)
Q Consensus 288 -~~--~~-------------~~~~~------------------------------------------------------- 296 (472)
.. .. .+...
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 00 00 00000
Q ss_pred -----------------EEEecchhHHHHHHHHHHhcC--CCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCC---
Q 012059 297 -----------------AIWVESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGE--- 354 (472)
Q Consensus 297 -----------------~~~~~~~~~~~~l~~~l~~~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~--- 354 (472)
........|...|.+++.... ..+.++||||+++.+++.+++.|. ..++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~-~~~~~~~~~~g~~~~ 401 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLE-KEGIKAVRFVGQASK 401 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHH-hCCCceEEEEccccc
Confidence 000001123333444443322 356789999999999999999997 778888888886
Q ss_pred -----CCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 355 -----KPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 355 -----~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
+++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|. |.+++++....
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999864 88888887653
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=7e-37 Score=300.55 Aligned_cols=323 Identities=21% Similarity=0.230 Sum_probs=229.5
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.-.++.||.+.+..++ |+|+||++|||+|||+++...+..++.. .+..++|+++|++.|+.|....+..++
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw--------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW--------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc--------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 3478999999999999 9999999999999999999999888755 445889999999999999886667666
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCC-CCCeeEEEEeccchhhhcCcHHHHH-HHHHhC
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIE-LDDIRMFVLDEVDCMLQRGFRDQVM-QIFRAI 251 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~-~~~~~~iVvDE~h~~~~~~~~~~~~-~i~~~~ 251 (472)
.. ..+....||.........+....+|+++||+.+.+.+...... ++++.++||||||+......+..+. ..+..-
T Consensus 131 ~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 131 IP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred Cc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhh
Confidence 44 5666666765544444466677999999999999988875443 5899999999999987655555555 333322
Q ss_pred -CCCceEeecccccHHHHHHHhhhcCCcEEEEe-----------------------------------------------
Q 012059 252 -SLPQILMYSATISQEVEKMSSSISKDIVVVSV----------------------------------------------- 283 (472)
Q Consensus 252 -~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~----------------------------------------------- 283 (472)
...|+|++|||+..+.......+..-.+.+.+
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 55599999999643332221111000000000
Q ss_pred --------CC----C------CCCcccee--EE--------------------EE---------------E---------
Q 012059 284 --------GK----P------NMPNKAVK--QL--------------------AI---------------W--------- 299 (472)
Q Consensus 284 --------~~----~------~~~~~~~~--~~--------------------~~---------------~--------- 299 (472)
.. . .....+.. +. .. +
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354|consen 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred cCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHh
Confidence 00 0 00000000 00 00 0
Q ss_pred ----------------------ecchhHHHHHHHHHHhc--CCCCCCEEEEECCchhHHHHHHHHhhh--cCCeEEEEc-
Q 012059 300 ----------------------VESNKKKQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIH- 352 (472)
Q Consensus 300 ----------------------~~~~~~~~~l~~~l~~~--~~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~- 352 (472)
.....+...+.+.+.+. .....++|||+.++..|..+..+|.+. .+.+...+-
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354|consen 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred cchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeee
Confidence 00012233333444332 233458999999999999999998732 233333332
Q ss_pred -------CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEE
Q 012059 353 -------GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 425 (472)
Q Consensus 353 -------~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 425 (472)
.+|++.++.++++.|++|+++|||||+++++|+||+.|+.||.||...|+..++||.|| ||. +.|.+++++
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~ 526 (746)
T KOG0354|consen 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLT 526 (746)
T ss_pred ccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999 997 578999998
Q ss_pred cCCC
Q 012059 426 NEEN 429 (472)
Q Consensus 426 ~~~~ 429 (472)
...+
T Consensus 527 t~~~ 530 (746)
T KOG0354|consen 527 TGSE 530 (746)
T ss_pred cchh
Confidence 8443
No 72
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.9e-37 Score=314.22 Aligned_cols=329 Identities=21% Similarity=0.319 Sum_probs=251.0
Q ss_pred HHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
...+|...+++-|.++|..++.|++++|.+|||.||++||.+|++-. ++..|||.|..+|.+. +
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-------------~gitvVISPL~SLm~D---Q 320 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-------------GGVTVVISPLISLMQD---Q 320 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-------------CCceEEeccHHHHHHH---H
Confidence 35679999999999999999999999999999999999999999742 4479999999999664 4
Q ss_pred HHHHhcCCCCeEEEEEcCcchHHHH---HHHhc---CCCEEEeChHHHHHHH--HcCCCCCCC---eeEEEEeccchhhh
Q 012059 169 AKLLGKGLPFKTALVVGGDAMARQV---YRIQQ---GVELIVGTPGRLIDLL--MKHDIELDD---IRMFVLDEVDCMLQ 237 (472)
Q Consensus 169 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~---~~~I~i~Tp~~l~~~~--~~~~~~~~~---~~~iVvDE~h~~~~ 237 (472)
+..+ ...++....+.++....++. ..+.. ..+|++.|||++...- ......+.. +.++|+||||+..+
T Consensus 321 v~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSq 399 (941)
T KOG0351|consen 321 VTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQ 399 (941)
T ss_pred HHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhh
Confidence 4444 23457778888877765433 33333 3789999999985422 122223333 88999999999999
Q ss_pred cC--cHHHHHH---HHHhCCCCceEeecccccHHHHHHHhhhc--CCcEEEEeCCCCCCccceeEEEEEecchhHHHHHH
Q 012059 238 RG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSIS--KDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 310 (472)
Q Consensus 238 ~~--~~~~~~~---i~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (472)
|+ |++.+.. +..+++...++++|||....++...-..+ .++..+. .. ....++.-.+..-........+.
T Consensus 400 WgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~s--fnR~NL~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 400 WGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK-SS--FNRPNLKYEVSPKTDKDALLDIL 476 (941)
T ss_pred hcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec-cc--CCCCCceEEEEeccCccchHHHH
Confidence 87 6665554 44555778999999999887766443332 2333221 11 11222222221111122222333
Q ss_pred HHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 012059 311 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 390 (472)
Q Consensus 311 ~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 390 (472)
..+. ........||||.++..|+.++..|+ ..++.+..+|++|+..+|..+.+.|..++++|+|||-++++|||.|++
T Consensus 477 ~~~~-~~~~~~s~IIYC~sr~~ce~vs~~L~-~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DV 554 (941)
T KOG0351|consen 477 EESK-LRHPDQSGIIYCLSRKECEQVSAVLR-SLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDV 554 (941)
T ss_pred HHhh-hcCCCCCeEEEeCCcchHHHHHHHHH-HhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCce
Confidence 3332 33456789999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHH
Q 012059 391 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 439 (472)
Q Consensus 391 ~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 439 (472)
+.||||..|+|.+.|.|-+|||||.|....|++|+...|...++.++.-
T Consensus 555 R~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 555 RFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred eEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999987766665543
No 73
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.2e-36 Score=319.86 Aligned_cols=292 Identities=24% Similarity=0.332 Sum_probs=220.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHH
Q 012059 83 QKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 162 (472)
Q Consensus 83 ~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~ 162 (472)
.++.+.+.+.....|+++|..+++.++.|++++++||||+|||+ |.+|+...+.. .++++||++||++||
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeCHHHHH
Confidence 34455555544448999999999999999999999999999997 66777655432 367899999999999
Q ss_pred HHHHHHHHHHhcCCCCeEE---EEEcCcchHHH---HHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchh
Q 012059 163 IQVEEQAKLLGKGLPFKTA---LVVGGDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 235 (472)
Q Consensus 163 ~q~~~~~~~~~~~~~~~~~---~~~~g~~~~~~---~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~ 235 (472)
.|+++.++.++...++.+. .++||.+..++ ...+.+ +++|+|+||++|.+.+..-. . +++++|+||||++
T Consensus 135 ~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~ 211 (1171)
T TIGR01054 135 IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDAL 211 (1171)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhh
Confidence 9999999999887665543 45677665543 233343 49999999999988776422 2 7999999999999
Q ss_pred hh-----------cCcHHH-HHHHH----------------------HhC-CCCc--eEeeccc-ccHHHHHHHhhhcCC
Q 012059 236 LQ-----------RGFRDQ-VMQIF----------------------RAI-SLPQ--ILMYSAT-ISQEVEKMSSSISKD 277 (472)
Q Consensus 236 ~~-----------~~~~~~-~~~i~----------------------~~~-~~~~--~i~~SAT-~~~~~~~~~~~~~~~ 277 (472)
++ +||..+ +..++ ..+ ...| ++++||| .|..+.. .++.+
T Consensus 212 L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ 288 (1171)
T TIGR01054 212 LKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRE 288 (1171)
T ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHccc
Confidence 97 567653 44432 222 2233 5678999 5554432 23445
Q ss_pred cEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCc---hhHHHHHHHHhhhcCCeEEEEcCC
Q 012059 278 IVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSR---LGADLLSNAISVTTGMKALSIHGE 354 (472)
Q Consensus 278 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~ 354 (472)
...+.++.......++.+.+..... +...+..++... +.++||||+++ +.++.++..|. ..|+++..+||+
T Consensus 289 ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~-~~g~~a~~lhg~ 362 (1171)
T TIGR01054 289 LLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLE-NHGVKAVAYHAT 362 (1171)
T ss_pred ccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHH-hCCceEEEEeCC
Confidence 5556666555555667766654333 245566666543 35799999999 99999999998 679999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEe----ccccccCCCCC-CcEEEEecCCC
Q 012059 355 KPMKERREIMRSFLVGEVPVIVAT----GILGRGVELLG-VRQVIIFDMPN 400 (472)
Q Consensus 355 ~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-~~~VI~~~~p~ 400 (472)
+++ .+++.|++|+++||||| ++++||||+|+ +++|||||.|.
T Consensus 363 ~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 363 KPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 973 68999999999999995 89999999999 89999999998
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-36 Score=275.61 Aligned_cols=331 Identities=22% Similarity=0.293 Sum_probs=243.6
Q ss_pred HHHHHHH-CCCCCC-CHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 85 LLQNIEA-AGYDMP-TPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 85 i~~~l~~-~g~~~~-~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
+.+.|++ +|+..+ ++.|.+|+..+. .++|+.|++|||+||++||.+|.+.+ +...||+.|..+|
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------CCeEEEehHHHHH
Confidence 4456655 477654 789999999987 55799999999999999999999853 3479999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcCcchHHH---HHHH---hcCCCEEEeChHHHHH-----HHHcCCCCCCCeeEEEEe
Q 012059 162 CIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRI---QQGVELIVGTPGRLID-----LLMKHDIELDDIRMFVLD 230 (472)
Q Consensus 162 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~---~~~~~I~i~Tp~~l~~-----~~~~~~~~~~~~~~iVvD 230 (472)
.....+.+.++. +.+..+.+..+..+. +..+ +....+++.|||.... +++. -.+-.-+.|+|+|
T Consensus 74 IkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 74 IKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEec
Confidence 887777776653 333344433332222 1222 2346799999987522 2221 1122347899999
Q ss_pred ccchhhhcC--cHHHHHH---HHHhCCCCceEeecccccHHHHHHHh--hhcCCcEEEEeCCCCCCccceeEEEEE-ec-
Q 012059 231 EVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSS--SISKDIVVVSVGKPNMPNKAVKQLAIW-VE- 301 (472)
Q Consensus 231 E~h~~~~~~--~~~~~~~---i~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~- 301 (472)
|||+..+|| |++++.. +.+.++....+++|||....+++..- .-+..|+.+........ ++ ++.. ..
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~--NL--FYD~~~K~ 224 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD--NL--FYDNHMKS 224 (641)
T ss_pred hhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh--hh--hHHHHHHH
Confidence 999999997 6665544 45566889999999999988876433 33456654433221110 00 0000 00
Q ss_pred -chhHHHHHHHHHHh-----------cCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 012059 302 -SNKKKQKLFDILMS-----------KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV 369 (472)
Q Consensus 302 -~~~~~~~l~~~l~~-----------~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 369 (472)
-.+....|.++... .+...+..||||.+++.++.++-.|. ..|+++..+|.++...+|.++.+.|.+
T Consensus 225 ~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~-~~Gi~A~AYHAGLK~~ERTeVQe~WM~ 303 (641)
T KOG0352|consen 225 FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE-IAGIPAMAYHAGLKKKERTEVQEKWMN 303 (641)
T ss_pred HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh-hcCcchHHHhcccccchhHHHHHHHhc
Confidence 01112233333222 12234578999999999999999998 889999999999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHH
Q 012059 370 GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 370 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 438 (472)
+++.|++||..+++|+|-|++++|||++.|.++.-|.|-.|||||.|..+.|-++|+..|.+.++.++.
T Consensus 304 ~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 304 NEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999887766654
No 75
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-36 Score=273.25 Aligned_cols=301 Identities=26% Similarity=0.429 Sum_probs=236.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHhcCC---CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeE
Q 012059 150 PLAMVLTPTRELCIQVEEQAKLLGKGL---PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRM 226 (472)
Q Consensus 150 ~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~ 226 (472)
+.++|+-|+++|++|.+..+++|...+ .++...+.||.....+...+..+.+|+|+||+++.+.++...+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 679999999999999999777775443 36677889999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhcCcHHHHHHHHHhC-------CCCceEeeccccc-HHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEE
Q 012059 227 FVLDEVDCMLQRGFRDQVMQIFRAI-------SLPQILMYSATIS-QEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAI 298 (472)
Q Consensus 227 iVvDE~h~~~~~~~~~~~~~i~~~~-------~~~~~i~~SAT~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 298 (472)
+|+||++.++..++...+..+...+ ...|.+..|||+. -++..+.+.++.-|..+........++.+.+...
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 9999999999888888888877666 3478899999975 2355566677777777766665555554444433
Q ss_pred Eecch--hHHHHH----------------------------HHHHHh-------cCCCCCCEEEEECCchhHHHHHHHHh
Q 012059 299 WVESN--KKKQKL----------------------------FDILMS-------KQHFTPPAVVYVGSRLGADLLSNAIS 341 (472)
Q Consensus 299 ~~~~~--~~~~~l----------------------------~~~l~~-------~~~~~~~~lIf~~~~~~~~~l~~~L~ 341 (472)
.+..+ ..-..+ ..++.. ....-.+.||||.++..|+.|.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 22111 000011 111110 11223489999999999999999998
Q ss_pred hhcC--CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcc
Q 012059 342 VTTG--MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEG 419 (472)
Q Consensus 342 ~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g 419 (472)
+..+ +.+.++||+..+.+|.+-++.|..+..+.||||++++||+||..+-++||..+|.....|+||+||+||+.+-|
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcc
Confidence 5544 67889999999999999999999999999999999999999999999999999999999999999999987778
Q ss_pred eEEEEEcC--------------------------------CChHHHHHHHHHHHHcCCCCCHH
Q 012059 420 TAIVFVNE--------------------------------ENKNLFQELVDILKSSGAGIPRE 450 (472)
Q Consensus 420 ~~~~~~~~--------------------------------~~~~~~~~l~~~l~~~~~~~~~~ 450 (472)
.++.++-. .+...+.++.+.|+-..+.+...
T Consensus 607 laislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~ 669 (725)
T KOG0349|consen 607 LAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKT 669 (725)
T ss_pred eeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCC
Confidence 77776631 13456777788877766655443
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-35 Score=296.99 Aligned_cols=320 Identities=13% Similarity=0.140 Sum_probs=218.8
Q ss_pred CCCHHHHHHHhhHhc-C--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALS-G--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~-~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
.++|||.+++..+.. + ++.++++|||+|||++.+..+. .+ +.++|||||+..|+.||.+++.++
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l------------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV------------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh------------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 789999999999883 3 4789999999999998665443 22 345999999999999999999998
Q ss_pred hcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc--------CCCCCCCeeEEEEeccchhhhcCcHHHH
Q 012059 173 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--------HDIELDDIRMFVLDEVDCMLQRGFRDQV 244 (472)
Q Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~--------~~~~~~~~~~iVvDE~h~~~~~~~~~~~ 244 (472)
....+..+..++|+.... ......|+|+|++.+.....+ ..+.-..+++||+||||++.. ...
T Consensus 322 ~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~f 392 (732)
T TIGR00603 322 STIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMF 392 (732)
T ss_pred cCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHH
Confidence 643334555555543211 123478999999987543221 112234688999999999853 445
Q ss_pred HHHHHhCCCCceEeecccccHHHH--HHHhhhcCCcEEEEeCCCCC----CccceeEEEEEe------------------
Q 012059 245 MQIFRAISLPQILMYSATISQEVE--KMSSSISKDIVVVSVGKPNM----PNKAVKQLAIWV------------------ 300 (472)
Q Consensus 245 ~~i~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~------------------ 300 (472)
..++..+.....+++|||+...-. .....+.... .....-... ....+....+++
T Consensus 393 r~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~-vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 393 RRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPK-LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCe-eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 567777778889999999853211 1112222221 111100000 000011111111
Q ss_pred -----cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE
Q 012059 301 -----ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV 374 (472)
Q Consensus 301 -----~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v 374 (472)
....|...+..++..+...+.++||||.+...++.++..|. +..+||++++.+|..+++.|++| .+++
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 11223334444454443466799999999998888887763 45689999999999999999875 8899
Q ss_pred EEEeccccccCCCCCCcEEEEecCC-CCHhHHHHhhcccccCCCcceE-------EEEEcCCCh--HHHHHHHHHHHHcC
Q 012059 375 IVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRASQMGDEGTA-------IVFVNEENK--NLFQELVDILKSSG 444 (472)
Q Consensus 375 LvaT~~~~~Gidi~~~~~VI~~~~p-~s~~~~~Qr~GR~~R~g~~g~~-------~~~~~~~~~--~~~~~l~~~l~~~~ 444 (472)
||+|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ |.|++.+.. ....+-..+|-+.|
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999987 5999999999999999876554 778887643 34444455555443
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.2e-34 Score=276.83 Aligned_cols=291 Identities=16% Similarity=0.161 Sum_probs=198.3
Q ss_pred HHHHHHhhHhcCCc--EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC-
Q 012059 100 VQMQAIPSALSGKS--LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL- 176 (472)
Q Consensus 100 ~Q~~~i~~~~~~~~--~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~- 176 (472)
+|.++++.+..+.+ +++++|||||||.+|++|++.. +.++++++|+++|++|+++.++.+...+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~ 67 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-------------ENDTIALYPTNALIEDQTEAIKEFVDVFK 67 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-------------CCCEEEEeChHHHHHHHHHHHHHHHHhcC
Confidence 59999999998764 8899999999999999998741 2358999999999999999998886432
Q ss_pred ---CCeEEEEEcCcchH--HH----------------HH-H-HhcCCCEEEeChHHHHHHHHcC---CC-----CCCCee
Q 012059 177 ---PFKTALVVGGDAMA--RQ----------------VY-R-IQQGVELIVGTPGRLIDLLMKH---DI-----ELDDIR 225 (472)
Q Consensus 177 ---~~~~~~~~~g~~~~--~~----------------~~-~-~~~~~~I~i~Tp~~l~~~~~~~---~~-----~~~~~~ 225 (472)
+..+..+.|..... .. .+ . ..+.++|+++||+.|..++... .. .+.+++
T Consensus 68 ~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 68 PERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 34444444431111 00 00 0 1235789999999997765431 11 147899
Q ss_pred EEEEeccchhhhcCc-----HHHHHHHHHhC-CCCceEeecccccHHHHHHHhhh--cCCcEEEEeCCCCC---------
Q 012059 226 MFVLDEVDCMLQRGF-----RDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI--SKDIVVVSVGKPNM--------- 288 (472)
Q Consensus 226 ~iVvDE~h~~~~~~~-----~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~--------- 288 (472)
+||+||+|.+..+.. .-....++... ...+++++|||++..+....... +..++....+....
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEA 227 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhc
Confidence 999999999764331 11223333322 35799999999998877766654 34443332222000
Q ss_pred --C-------ccceeEEEEEecchhHHH---HHHHHHHhcC--CCCCCEEEEECCchhHHHHHHHHhhh-cCCeEEEEcC
Q 012059 289 --P-------NKAVKQLAIWVESNKKKQ---KLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVT-TGMKALSIHG 353 (472)
Q Consensus 289 --~-------~~~~~~~~~~~~~~~~~~---~l~~~l~~~~--~~~~~~lIf~~~~~~~~~l~~~L~~~-~~~~~~~~~~ 353 (472)
. ...+.+.+.. ....+.. .+.+.+.+.. ..++++||||++...++.++..|++. .+..+..+||
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 0 0133333333 2222222 2333332211 24568999999999999999999832 2467888999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccc
Q 012059 354 EKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS 413 (472)
Q Consensus 354 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~ 413 (472)
.+++.+|.+. ++.+|||||+++++|||++.. +|| ++ |.+.+.|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999988654 478999999999999999986 666 55 889999999999997
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=262.35 Aligned_cols=340 Identities=20% Similarity=0.304 Sum_probs=256.1
Q ss_pred cCCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 78 SCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 78 ~~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
+++++.+..+-|+. +...+++|.|..+|+..++|+++++..|||.||++||.+|++.. .+.+||++
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------------dg~alvi~ 141 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------------DGFALVIC 141 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-------------CCceEeec
Confidence 56777777777754 46778999999999999999999999999999999999999863 56799999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HH---hcCCCEEEeChHHHHH---HHHc--CCCCCCCee
Q 012059 157 PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RI---QQGVELIVGTPGRLID---LLMK--HDIELDDIR 225 (472)
Q Consensus 157 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~---~~~~~I~i~Tp~~l~~---~~~~--~~~~~~~~~ 225 (472)
|...|.+...-.++.++ +....+....+..+..+ .+ .+...+++.||+++.. ++++ .......+.
T Consensus 142 plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~ 217 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFK 217 (695)
T ss_pred hhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeE
Confidence 99999887777777765 33334433333332211 11 1346799999999843 2221 334566789
Q ss_pred EEEEeccchhhhcC--cHHH---HHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEe
Q 012059 226 MFVLDEVDCMLQRG--FRDQ---VMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWV 300 (472)
Q Consensus 226 ~iVvDE~h~~~~~~--~~~~---~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 300 (472)
+|.+||+|+..+|+ |++. +.-+-+.++...++++|||..+.+.+.++.++.-.......... ...++.-.+...
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f-nr~nl~yev~qk 296 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF-NRPNLKYEVRQK 296 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc-CCCCceeEeeeC
Confidence 99999999999987 4443 33445667999999999999988877777665432222221111 111222122211
Q ss_pred c--chhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012059 301 E--SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 378 (472)
Q Consensus 301 ~--~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 378 (472)
+ ..+-.+.+..++... -.+...||||-+++.++.++..|+ ..|+.+..+|..|.++++.-+-+.|-+|++.|+|+|
T Consensus 297 p~n~dd~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alk-n~gi~a~~yha~lep~dks~~hq~w~a~eiqvivat 374 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALK-NHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVAT 374 (695)
T ss_pred CCChHHHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHH-hcCccccccccccCccccccccccccccceEEEEEE
Confidence 2 122344555555432 345678999999999999999998 889999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcEEEEecCCCCHhHHHH-------------------------------------------hhcccccC
Q 012059 379 GILGRGVELLGVRQVIIFDMPNSIKEYVH-------------------------------------------QIGRASQM 415 (472)
Q Consensus 379 ~~~~~Gidi~~~~~VI~~~~p~s~~~~~Q-------------------------------------------r~GR~~R~ 415 (472)
-++++|||-|++++||+..+|+|++.|.| -.||+||.
T Consensus 375 vafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd 454 (695)
T KOG0353|consen 375 VAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRD 454 (695)
T ss_pred eeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccC
Confidence 99999999999999999999999999999 57999999
Q ss_pred CCcceEEEEEcCCChHHHHHHH
Q 012059 416 GDEGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 416 g~~g~~~~~~~~~~~~~~~~l~ 437 (472)
+.+..|++++.-.|.-....++
T Consensus 455 ~~~a~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 455 DMKADCILYYGFADIFKISSMV 476 (695)
T ss_pred CCcccEEEEechHHHHhHHHHH
Confidence 9999999999887755444443
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.8e-33 Score=271.28 Aligned_cols=353 Identities=18% Similarity=0.254 Sum_probs=271.4
Q ss_pred CCHHHHHH-HHHCCCCCCCHHHHHHHhhHhcC------CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 81 LSQKLLQN-IEAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 81 l~~~i~~~-l~~~g~~~~~~~Q~~~i~~~~~~------~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
....+++. +...+| ++|..|++++..+... .+-++++.-|||||++++++++..+. .|.++.
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~----------~G~Q~A 315 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE----------AGYQAA 315 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH----------cCCeeE
Confidence 34444444 466788 8999999999999833 46899999999999999999998764 478899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchH---HHHHHHhcC-CCEEEeChHHHHHHHHcCCCCCCCeeEEEE
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA---RQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVL 229 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVv 229 (472)
.++||.-||.|.++.+.++...+++++..++|..... +....+.+| .+|+|+| +-+-.....+.++.++|+
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIi 390 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVII 390 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEE
Confidence 9999999999999999999999999999999865533 333445555 9999999 566677778999999999
Q ss_pred eccchhhhcCcHHHHHHHHHhCC-CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHH
Q 012059 230 DEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQK 308 (472)
Q Consensus 230 DE~h~~~~~~~~~~~~~i~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (472)
||=|++.- .+-..+..+-. .+.++.||||+-+.. ++-..+.+..+............+...... ..+...
T Consensus 391 DEQHRFGV----~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i~---~~~~~~ 461 (677)
T COG1200 391 DEQHRFGV----HQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVIP---HERRPE 461 (677)
T ss_pred eccccccH----HHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEec---cccHHH
Confidence 99999852 33334444445 689999999986534 333444444433333333333344444332 244556
Q ss_pred HHHHHHhcCCCCCCEEEEECCchhH--------HHHHHHHhhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012059 309 LFDILMSKQHFTPPAVVYVGSRLGA--------DLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 379 (472)
Q Consensus 309 l~~~l~~~~~~~~~~lIf~~~~~~~--------~~l~~~L~~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 379 (472)
+++.+......+.++-+.|+-.++. ..++..|+... ++++..+||.|+..+++++++.|++|+++|||||.
T Consensus 462 v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT 541 (677)
T COG1200 462 VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT 541 (677)
T ss_pred HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 6666666656778899999876544 45566666333 67799999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEecCCC-CHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhchhhc
Q 012059 380 ILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 458 (472)
Q Consensus 380 ~~~~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 458 (472)
+.+.|+|+|+++++|+.+.-. -.++.-|-.||+||.+..+.|++++.+...+..++-++++....-.+--.=.|++.+.
T Consensus 542 VIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklRG 621 (677)
T COG1200 542 VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLRG 621 (677)
T ss_pred EEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhccC
Confidence 999999999999999988654 4677888889999999999999999998877777888888888777766666666664
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.7e-32 Score=278.71 Aligned_cols=314 Identities=16% Similarity=0.220 Sum_probs=222.5
Q ss_pred CCCHHHHHHHhhHhcC---CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSG---KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~---~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
.+++.|.++++.+..+ +++++.++||||||.+|+.++...+. .+.++||++|+++|+.|+.+.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----------QGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 5899999999999874 78999999999999999887766553 2568999999999999999988875
Q ss_pred hcCCCCeEEEEEcCcchHHHHHH---Hh-cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCc------HH
Q 012059 173 GKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF------RD 242 (472)
Q Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~------~~ 242 (472)
. +..+..++|+.+..+.... +. ...+|+|+|++.+. ..+.++++||+||+|.....+. ..
T Consensus 214 f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 214 F---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred h---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 3 4678888888776544332 22 35899999997763 3577899999999997653321 13
Q ss_pred HHHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCC--CCccceeEEEEEecch-------hHHHHHHHHH
Q 012059 243 QVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPN--MPNKAVKQLAIWVESN-------KKKQKLFDIL 313 (472)
Q Consensus 243 ~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~l~~~l 313 (472)
.+........+.+++++|||++.+....+.. .....+...... .....+... ..... .-...+++.+
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~i--d~~~~~~~~~~~~ls~~l~~~i 359 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEII--DMRELLRGENGSFLSPPLLEAI 359 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEE--echhhhhhcccCCCCHHHHHHH
Confidence 3444445557889999999988555443322 222222222111 111111111 11100 0113455556
Q ss_pred HhcCCCCCCEEEEECCch------------------------------------------------------------hH
Q 012059 314 MSKQHFTPPAVVYVGSRL------------------------------------------------------------GA 333 (472)
Q Consensus 314 ~~~~~~~~~~lIf~~~~~------------------------------------------------------------~~ 333 (472)
.+....+.++|||++.+. .+
T Consensus 360 ~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~ 439 (679)
T PRK05580 360 KQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGT 439 (679)
T ss_pred HHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccH
Confidence 555556668888877532 45
Q ss_pred HHHHHHHhhh-cCCeEEEEcCCCCH--HHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCC--CC-------
Q 012059 334 DLLSNAISVT-TGMKALSIHGEKPM--KERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP--NS------- 401 (472)
Q Consensus 334 ~~l~~~L~~~-~~~~~~~~~~~~~~--~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p--~s------- 401 (472)
+.+++.|.+. .+.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|+++.|+.+|.+ .+
T Consensus 440 e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~ 519 (679)
T PRK05580 440 ERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRAS 519 (679)
T ss_pred HHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchH
Confidence 5666777633 26788999999874 578999999999999999999999999999999999766543 22
Q ss_pred ---HhHHHHhhcccccCCCcceEEEEEcCCChHHH
Q 012059 402 ---IKEYVHQIGRASQMGDEGTAIVFVNEENKNLF 433 (472)
Q Consensus 402 ---~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 433 (472)
...|.|++||+||.+..|.+++.....+....
T Consensus 520 Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~ 554 (679)
T PRK05580 520 ERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVI 554 (679)
T ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHH
Confidence 35789999999999999999998876654433
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-32 Score=284.64 Aligned_cols=332 Identities=16% Similarity=0.195 Sum_probs=219.2
Q ss_pred CCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.|.|||.+++..++.. ..+++..++|.|||+.+.+.+...+.. +...++|||||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 6999999998887643 479999999999999876655544433 445679999997 89999999986543
Q ss_pred cCCCCeEEEEEcCcchHHHHH---HHhcCCCEEEeChHHHHHHHH-cCCCCCCCeeEEEEeccchhhhcC-cHHHHHHHH
Q 012059 174 KGLPFKTALVVGGDAMARQVY---RIQQGVELIVGTPGRLIDLLM-KHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIF 248 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~I~i~Tp~~l~~~~~-~~~~~~~~~~~iVvDE~h~~~~~~-~~~~~~~i~ 248 (472)
. +....+.++ ....... ......+++|+|++.+...-. ...+.-..+++|||||||++.... -.......+
T Consensus 223 ~---l~~~i~~~~-~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 223 N---LRFSLFDEE-RYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred C---CCeEEEcCc-chhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 2 333333222 1111000 011236799999987764211 111223468999999999986211 011112333
Q ss_pred HhC--CCCceEeecccccH----------------------HHH----------HHHh-----------------hhcCC
Q 012059 249 RAI--SLPQILMYSATISQ----------------------EVE----------KMSS-----------------SISKD 277 (472)
Q Consensus 249 ~~~--~~~~~i~~SAT~~~----------------------~~~----------~~~~-----------------~~~~~ 277 (472)
..+ ..+.++++|||+-. .+. .... .++.+
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 333 45678999999421 000 0000 00000
Q ss_pred -----------------------------------cEEEEeCCC---CCCccceeEEEE---------------------
Q 012059 278 -----------------------------------IVVVSVGKP---NMPNKAVKQLAI--------------------- 298 (472)
Q Consensus 278 -----------------------------------~~~i~~~~~---~~~~~~~~~~~~--------------------- 298 (472)
.+.+..... ..+......+..
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 000000000 000000011000
Q ss_pred ---------------EecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHH
Q 012059 299 ---------------WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREI 363 (472)
Q Consensus 299 ---------------~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~ 363 (472)
+.....|...|.+++... ...|+||||+++.++..++..|+...|+.+..+||+|++.+|.++
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRA 536 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHH
Confidence 111123444556655443 256899999999999999999965779999999999999999999
Q ss_pred HHHHhcC--CCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHH
Q 012059 364 MRSFLVG--EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 441 (472)
Q Consensus 364 ~~~f~~g--~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 441 (472)
++.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+.+++...+......+.+.+.
T Consensus 537 ~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 537 AAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred HHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHh
Confidence 9999974 69999999999999999999999999999999999999999999999998888877666555555666555
Q ss_pred H
Q 012059 442 S 442 (472)
Q Consensus 442 ~ 442 (472)
+
T Consensus 617 ~ 617 (956)
T PRK04914 617 E 617 (956)
T ss_pred h
Confidence 5
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.3e-33 Score=290.74 Aligned_cols=301 Identities=17% Similarity=0.236 Sum_probs=212.0
Q ss_pred HHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC----HHHHHHHHHHHHH-Hhc
Q 012059 100 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT----RELCIQVEEQAKL-LGK 174 (472)
Q Consensus 100 ~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt----~~L~~q~~~~~~~-~~~ 174 (472)
+-.+.+..+..++.++|+|+||||||+ .+|.+..... .+....+++..|. ++||.++.+++.. ++.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 344556666677788999999999999 6785543221 1122345555575 5778887777764 443
Q ss_pred CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccc-hhhhcCcHH-HHHHHHHhCC
Q 012059 175 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRD-QVMQIFRAIS 252 (472)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h-~~~~~~~~~-~~~~i~~~~~ 252 (472)
..|+.+ .... ....+++|+++||++|++.+.... .+.++++||||||| ++++.+|.. .+..++...+
T Consensus 149 ~VGY~v----rf~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rp 217 (1294)
T PRK11131 149 CVGYKV----RFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRP 217 (1294)
T ss_pred eeceee----cCcc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcCC
Confidence 333221 1111 123568999999999999988665 48999999999999 577777653 3445555556
Q ss_pred CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecc------hhHHHHHHHHHHhc-CCCCCCEEE
Q 012059 253 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES------NKKKQKLFDILMSK-QHFTPPAVV 325 (472)
Q Consensus 253 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~-~~~~~~~lI 325 (472)
..|+|+||||++. ..+.+.+...++ +.+..... .+...+..... ......++..+... ....+.+||
T Consensus 218 dlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 7899999999974 456666665554 33333222 23444433321 12223333333221 234568999
Q ss_pred EECCchhHHHHHHHHhhhcCC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC----
Q 012059 326 YVGSRLGADLLSNAISVTTGM---KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM---- 398 (472)
Q Consensus 326 f~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~---- 398 (472)
|+++..+++.+++.|. ..+. .+..+||++++.+|..+++. .|..+|||||+++++|||+|++++||+++.
T Consensus 292 FLpg~~EIe~lae~L~-~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 292 FMSGEREIRDTADALN-KLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EcCCHHHHHHHHHHHH-hcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999998 4443 47789999999999999886 578899999999999999999999999863
Q ss_pred -----------C---CCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 399 -----------P---NSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 399 -----------p---~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
| .|..+|.||.||+||. .+|.|+.++++.+.
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4568999999999999 68999999997754
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.3e-32 Score=264.93 Aligned_cols=291 Identities=20% Similarity=0.266 Sum_probs=202.0
Q ss_pred CCCHHHHHHHhhHhc----CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALS----GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~----~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|+++|.+++..+.+ ++..++++|||+|||.+++..+... +..+|||||+++|+.||.+.+..
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-------------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-------------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-------------cCCEEEEECcHHHHHHHHHHHHH
Confidence 799999999999997 8999999999999999766555432 22399999999999999877766
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
..... .....+||..... .. ..|.|+|++.+.............+++||+||||++....+. .+...+
T Consensus 103 ~~~~~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~ 170 (442)
T COG1061 103 FLLLN--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELL 170 (442)
T ss_pred hcCCc--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhh
Confidence 64321 1333444433221 01 469999999987753122222336899999999999755433 445555
Q ss_pred CCCc-eEeecccccHHHHH---HHhhhcCCcEEEEeCCC------CCCccceeEEEE-----------------------
Q 012059 252 SLPQ-ILMYSATISQEVEK---MSSSISKDIVVVSVGKP------NMPNKAVKQLAI----------------------- 298 (472)
Q Consensus 252 ~~~~-~i~~SAT~~~~~~~---~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~----------------------- 298 (472)
.... ++++|||++..-.. ....+.. ++....... ...+..+.....
T Consensus 171 ~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 171 SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 5555 99999997632101 1111111 122211110 000000000000
Q ss_pred -------------EecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHH
Q 012059 299 -------------WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMR 365 (472)
Q Consensus 299 -------------~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~ 365 (472)
......+...+..++.... .+.+++||+.+..++..++..+. ..+. +..+.+..+..+|+.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~-~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFL-APGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhc-CCCc-eEEEECCCCHHHHHHHHH
Confidence 0011112223333333333 46689999999999999999998 4555 888999999999999999
Q ss_pred HHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccC
Q 012059 366 SFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 415 (472)
Q Consensus 366 ~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~ 415 (472)
.|+.|.+++|+++.++.+|+|+|+++++|......|...|.||+||.-|.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999993
No 84
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=275.14 Aligned_cols=337 Identities=19% Similarity=0.221 Sum_probs=245.6
Q ss_pred CCCCCCHHHHHHHhhHhcC-CcEEEEccCCCCcchhhHHHHHHHHhhhhhcc-cCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 93 GYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHH-SQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~~~~~-~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~-~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
|...+.++|......++.+ .|+++|||||+|||-++++-+++.+-...... .-.-...++++++|.++|++.|...+.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 6777999999999998854 68999999999999999999999876532211 111234589999999999999999888
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC--CCCCCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~--~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
+....+++++.-.+|+.....+. ..+..|+|||||++.-..++.. ...+-++++|+||.|.+-+ ..++.++++.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIV 461 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIV 461 (1674)
T ss_pred hhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHH
Confidence 88888999999999986644321 1457899999999966555422 2244578999999996643 3466666665
Q ss_pred HhC--------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhH-------HHHHHHHH
Q 012059 249 RAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKK-------KQKLFDIL 313 (472)
Q Consensus 249 ~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~l 313 (472)
.+. ...+++++|||+|+ -.+.+.-+..++.-+........+..+.|.++-+..... .+...+.+
T Consensus 462 aRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKV 540 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKV 540 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHH
Confidence 544 46889999999997 334444333333323223333333334555544433221 12344444
Q ss_pred HhcCCCCCCEEEEECCchhHHHHHHHHh------------------------------------hhcCCeEEEEcCCCCH
Q 012059 314 MSKQHFTPPAVVYVGSRLGADLLSNAIS------------------------------------VTTGMKALSIHGEKPM 357 (472)
Q Consensus 314 ~~~~~~~~~~lIf~~~~~~~~~l~~~L~------------------------------------~~~~~~~~~~~~~~~~ 357 (472)
.+..+. +++|||+-+++++...|+.++ +...+.+..+|+||++
T Consensus 541 m~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R 619 (1674)
T KOG0951|consen 541 LEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNR 619 (1674)
T ss_pred HHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCc
Confidence 444444 799999999998888887776 1224567789999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ecC------CCCHhHHHHhhcccccCCCc--ceEEEEE
Q 012059 358 KERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FDM------PNSIKEYVHQIGRASQMGDE--GTAIVFV 425 (472)
Q Consensus 358 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~~------p~s~~~~~Qr~GR~~R~g~~--g~~~~~~ 425 (472)
.+|..+.+.|..|.++|||+|.++++|+|+|+..++|- ||+ +.++.+.+||+|||||.+.+ |..++..
T Consensus 620 ~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 620 KDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred chHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 99999999999999999999999999999998766653 443 34789999999999998854 7777777
Q ss_pred cCCChHHHHH
Q 012059 426 NEENKNLFQE 435 (472)
Q Consensus 426 ~~~~~~~~~~ 435 (472)
...+...+..
T Consensus 700 ~~se~qyyls 709 (1674)
T KOG0951|consen 700 DHSELQYYLS 709 (1674)
T ss_pred CchHhhhhHH
Confidence 7766544444
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.6e-31 Score=282.04 Aligned_cols=313 Identities=18% Similarity=0.194 Sum_probs=216.0
Q ss_pred CCCCCCHHHH---HHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 93 GYDMPTPVQM---QAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 93 g~~~~~~~Q~---~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
.|....|+.. +.+..+.+++.++|+|+||||||+ .+|.+..-.. .+...++++.-|.|.-|..+++.+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-------~~~~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-------RGSHGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-------CCCCceEecCCccHHHHHHHHHHH
Confidence 3444344433 455556677889999999999999 5676643211 122346777779888777666555
Q ss_pred HH-HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccc-hhhhcCcHH-HHHH
Q 012059 170 KL-LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRD-QVMQ 246 (472)
Q Consensus 170 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h-~~~~~~~~~-~~~~ 246 (472)
.. ++...+..+...+..... ...++.|.++|+|.|++.+..+. .+.++++|||||+| +.++.++.- .+..
T Consensus 132 A~elg~~lG~~VGY~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~ 204 (1283)
T TIGR01967 132 AEELGTPLGEKVGYKVRFHDQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQ 204 (1283)
T ss_pred HHHhCCCcceEEeeEEcCCcc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHH
Confidence 43 333333222222222211 13457899999999999887655 48899999999999 477776654 3566
Q ss_pred HHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecc------hhHHHHHHHHHHhc-CCC
Q 012059 247 IFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES------NKKKQKLFDILMSK-QHF 319 (472)
Q Consensus 247 i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~-~~~ 319 (472)
++...+..++|+||||++. ..+.+.+...++. .+.....+ +...+..... ......+...+... ...
T Consensus 205 il~~rpdLKlIlmSATld~--~~fa~~F~~apvI-~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~ 278 (1283)
T TIGR01967 205 LLPRRPDLKIIITSATIDP--ERFSRHFNNAPII-EVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEG 278 (1283)
T ss_pred HHhhCCCCeEEEEeCCcCH--HHHHHHhcCCCEE-EECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhC
Confidence 6666688899999999974 4666666655543 33322221 2223322211 12233344433321 124
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEec
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTT--GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD 397 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~ 397 (472)
.+.+|||+++..+++.+++.|.+.. +..+..+||++++++|..+++.+ +..+|+|||+++++|||+|++++||+++
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCC
Confidence 5789999999999999999998432 35688999999999999986553 3478999999999999999999999988
Q ss_pred CC------------------CCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 398 MP------------------NSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 398 ~p------------------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
.+ .|.++|.||.||+||.| +|.||.++++.+.
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 43 36689999999999997 9999999987754
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-30 Score=258.16 Aligned_cols=292 Identities=16% Similarity=0.228 Sum_probs=202.8
Q ss_pred EEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH
Q 012059 115 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY 194 (472)
Q Consensus 115 iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 194 (472)
++.|+||||||.+|+..+...+ . .+.++||++|+++|+.|+++.+++.. +..+..++++.+..+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A---------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H---------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH
Confidence 4789999999999876554433 2 36679999999999999999888753 456777888766544333
Q ss_pred ---HHh-cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC-----c-HHHHHHHHHhCCCCceEeeccccc
Q 012059 195 ---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-----F-RDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 195 ---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-----~-~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
.+. ...+|+|+|+..+. ..+.++++|||||.|....++ | ...+........+.+++++|||++
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 233 34799999997663 257789999999999876332 1 234555566668899999999987
Q ss_pred HHHHHHHhhhcCCcEEEEeCCC--CCCccceeEEEEEecch----hHHHHHHHHHHhcCCCCCCEEEEECCchh------
Q 012059 265 QEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESN----KKKQKLFDILMSKQHFTPPAVVYVGSRLG------ 332 (472)
Q Consensus 265 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~lIf~~~~~~------ 332 (472)
-+....+. ......+..... ......+.. . ..... .-...+++.+.+....+.++|||+|++..
T Consensus 141 les~~~~~--~g~~~~~~l~~r~~~~~~p~v~v-i-d~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C 216 (505)
T TIGR00595 141 LESYHNAK--QKAYRLLVLTRRVSGRKPPEVKL-I-DMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLC 216 (505)
T ss_pred HHHHHHHh--cCCeEEeechhhhcCCCCCeEEE-E-ecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEh
Confidence 54433322 122222222111 111111111 1 11111 11245666666666667789999877643
Q ss_pred ------------------------------------------------------HHHHHHHHhhhc-CCeEEEEcCCCCH
Q 012059 333 ------------------------------------------------------ADLLSNAISVTT-GMKALSIHGEKPM 357 (472)
Q Consensus 333 ------------------------------------------------------~~~l~~~L~~~~-~~~~~~~~~~~~~ 357 (472)
.+.+++.|.+.. +.++..+|++++.
T Consensus 217 ~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~ 296 (505)
T TIGR00595 217 RSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTS 296 (505)
T ss_pred hhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEeccccc
Confidence 467777777433 6789999999987
Q ss_pred HHH--HHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCC------------CHhHHHHhhcccccCCCcceEEE
Q 012059 358 KER--REIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN------------SIKEYVHQIGRASQMGDEGTAIV 423 (472)
Q Consensus 358 ~~r--~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~------------s~~~~~Qr~GR~~R~g~~g~~~~ 423 (472)
..+ +.+++.|++|+.+|||+|+++++|+|+|+++.|+.+|... ....|.|++||+||.+..|.+++
T Consensus 297 ~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred CccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 655 8999999999999999999999999999999986544332 24678999999999999999998
Q ss_pred EEcCCCh
Q 012059 424 FVNEENK 430 (472)
Q Consensus 424 ~~~~~~~ 430 (472)
.....+.
T Consensus 377 qt~~p~~ 383 (505)
T TIGR00595 377 QTYNPNH 383 (505)
T ss_pred EeCCCCC
Confidence 7765543
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.2e-31 Score=264.74 Aligned_cols=179 Identities=19% Similarity=0.303 Sum_probs=142.0
Q ss_pred cccCCCHHHHHHHHHhcCcee-eCCCCCCcccCcccCCCCHHHHHHHH-----HCCCCCC---CHHHHHHHhhHhcCCcE
Q 012059 44 GFQSLTIGQTDSLRKRLEINV-KGDAVPAPILSFSSCSLSQKLLQNIE-----AAGYDMP---TPVQMQAIPSALSGKSL 114 (472)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~i~~~l~-----~~g~~~~---~~~Q~~~i~~~~~~~~~ 114 (472)
.+.+++.++....-..+.... .|..+. . .--+.+.+..++.+.+. ..||..| +|+|.++++.+..++++
T Consensus 33 ~~~~lsd~eL~~kt~~~k~~l~~~~~ld-~-~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gv 110 (970)
T PRK12899 33 KFSSLSDDELRNKTAELKQRYQDGESLD-K-LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGF 110 (970)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHcCCchH-H-HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCe
Confidence 366677766655433322211 121111 0 01245788888888877 5799988 99999999999999999
Q ss_pred EEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH
Q 012059 115 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY 194 (472)
Q Consensus 115 iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 194 (472)
++.++||+|||++|++|++..++. +..++||+||++||.|.++++..+.+.+++++.+++||....++..
T Consensus 111 IAeaqTGeGKTLAf~LP~l~~aL~----------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 111 ITEMQTGEGKTLTAVMPLYLNALT----------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE 180 (970)
T ss_pred EEEeCCCCChHHHHHHHHHHHHhh----------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 999999999999999999987754 1238999999999999999999999999999999999999888765
Q ss_pred HHhcCCCEEEeChHHH-HHHHHcCCCCCC-------CeeEEEEeccchhh
Q 012059 195 RIQQGVELIVGTPGRL-IDLLMKHDIELD-------DIRMFVLDEVDCML 236 (472)
Q Consensus 195 ~~~~~~~I~i~Tp~~l-~~~~~~~~~~~~-------~~~~iVvDE~h~~~ 236 (472)
.+ +++|+|+||++| .+++..+.+.+. .+.++|+||||.|+
T Consensus 181 ~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 181 IY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred Hc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 54 599999999999 999987755554 45899999999976
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=7.4e-31 Score=233.12 Aligned_cols=201 Identities=39% Similarity=0.714 Sum_probs=180.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEE
Q 012059 76 FSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 155 (472)
Q Consensus 76 ~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil 155 (472)
|+++++++.+.+.+...|+..|+++|.++++.+.+|+++++.+|||+|||++|++|++..+.... ...+++++|+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----ccCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999998876621 1357889999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchh
Q 012059 156 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 235 (472)
Q Consensus 156 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~ 235 (472)
+|+++|+.|+...++.+....++.+..++|+....+....+..+++|+|+||+.+.+++.+....+.+++++|+||+|.+
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999999887788889999998887776666668999999999999999888778899999999999999
Q ss_pred hhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEE
Q 012059 236 LQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVV 281 (472)
Q Consensus 236 ~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i 281 (472)
.+.++...+..+...+ ...+++++|||+++.+..+...+..+++.+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9888888888888888 468999999999999999998888888765
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.7e-30 Score=260.23 Aligned_cols=332 Identities=17% Similarity=0.201 Sum_probs=237.8
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|.-.--.+..| -|..++||+|||++|.+|++..++. +..++|++||++||.|.++++..
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 454 6677776655444444 6899999999999999999977654 34599999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcC-CCCC-----CCeeEEEEeccchhhhcC-----
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH-DIEL-----DDIRMFVLDEVDCMLQRG----- 239 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~-~~~~-----~~~~~iVvDE~h~~~~~~----- 239 (472)
+...+++++.+++||......... -.++|+++||++| .+++..+ ...+ ..+.++|+||+|.++-..
T Consensus 146 l~~~lGLtv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 146 IYEFLGLTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred HhcccCceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 999999999999999876664333 3689999999999 8888765 3333 478999999999976110
Q ss_pred -----------cHHHHHHHHHhC---------------CCCceEee----------------------------------
Q 012059 240 -----------FRDQVMQIFRAI---------------SLPQILMY---------------------------------- 259 (472)
Q Consensus 240 -----------~~~~~~~i~~~~---------------~~~~~i~~---------------------------------- 259 (472)
....+..+...+ ...+.+.+
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 111112222211 01122222
Q ss_pred --------------------------------------------------------------------------------
Q 012059 260 -------------------------------------------------------------------------------- 259 (472)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (472)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred --cccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHH
Q 012059 260 --SATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLS 337 (472)
Q Consensus 260 --SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~ 337 (472)
|+|......++.+.+..+.+.+....+... .-..-.++.....|...+...+......+.|+||||+|...++.++
T Consensus 384 GMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R--~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 384 GMTGTADTEAYEFQQIYNLEVVVIPTNRSMIR--KDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred cCCCCChhHHHHHHHHhCCCEEECCCCCCcce--ecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 222222222222222222211111111000 0011123455567778888888887788899999999999999999
Q ss_pred HHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC---------------------------
Q 012059 338 NAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV--------------------------- 390 (472)
Q Consensus 338 ~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~--------------------------- 390 (472)
..|. ..|++...+|+.+.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 462 ~~L~-~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (896)
T PRK13104 462 QLLK-KENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQ 538 (896)
T ss_pred HHHH-HcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhh
Confidence 9998 78999999999999999999999999995 99999999999998611
Q ss_pred -----------cEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHH----HHHHHHHHHc
Q 012059 391 -----------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF----QELVDILKSS 443 (472)
Q Consensus 391 -----------~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~ 443 (472)
=+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-+- ..+..++...
T Consensus 539 ~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~~~~~ 606 (896)
T PRK13104 539 KRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRL 606 (896)
T ss_pred hhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHHHHHc
Confidence 2677778888999999999999999999999999998874332 3344455544
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=9.8e-30 Score=260.13 Aligned_cols=397 Identities=19% Similarity=0.232 Sum_probs=289.2
Q ss_pred ccccCCCcccccCCCHHHHHHHHHhcCceeeC---CCC----CCcccCcccCCCCHHHHHHHH-HCCCCCCCHHHHHHHh
Q 012059 35 YVRESDENSGFQSLTIGQTDSLRKRLEINVKG---DAV----PAPILSFSSCSLSQKLLQNIE-AAGYDMPTPVQMQAIP 106 (472)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----p~~~~~~~~~~l~~~i~~~l~-~~g~~~~~~~Q~~~i~ 106 (472)
|...+.+.+.+.++..+.|..-+.+..-.+.. +.+ ......-..++.+....+.+. .++| .-|+-|..||.
T Consensus 526 Y~g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPy-eET~DQl~AI~ 604 (1139)
T COG1197 526 YVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPY-EETPDQLKAIE 604 (1139)
T ss_pred ccCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCC-cCCHHHHHHHH
Confidence 34445556778999999999987765432211 100 011111112344555555554 4577 66999999999
Q ss_pred hHh----cC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeE
Q 012059 107 SAL----SG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 180 (472)
Q Consensus 107 ~~~----~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 180 (472)
.+. ++ -|-+|||.-|.|||-+++-+++....+ |+.|.|+|||.-||+|.++.++.-...+++++
T Consensus 605 eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~----------GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I 674 (1139)
T COG1197 605 EVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD----------GKQVAVLVPTTLLAQQHYETFKERFAGFPVRI 674 (1139)
T ss_pred HHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC----------CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeE
Confidence 987 33 479999999999999999888887654 78899999999999999999998889999999
Q ss_pred EEEEcCcchHHHHHH---Hhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCc
Q 012059 181 ALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQ 255 (472)
Q Consensus 181 ~~~~~g~~~~~~~~~---~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~ 255 (472)
..+.--.+..++... +.. ..||+|+| +-+....+.+++++++|+||-|++.=. -.+-++.+ .+..
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRFGVk-----~KEkLK~Lr~~VD 744 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRFGVK-----HKEKLKELRANVD 744 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhcCcc-----HHHHHHHHhccCc
Confidence 888776665554433 333 48999999 556667788999999999999997522 22333333 6788
Q ss_pred eEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHH
Q 012059 256 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 335 (472)
Q Consensus 256 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~ 335 (472)
++-||||+-+....++-.-.++.-+|...... ...+..++...+..- +.+.+......++++-...|..+..+.
T Consensus 745 vLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~~~----ireAI~REl~RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 745 VLTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDDLL----IREAILRELLRGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EEEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCChHH----HHHHHHHHHhcCCEEEEEecchhhHHH
Confidence 99999998766767776666666555443322 222444443333333 333344444677888888999999999
Q ss_pred HHHHHhhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCC-CHhHHHHhhcccc
Q 012059 336 LSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRAS 413 (472)
Q Consensus 336 l~~~L~~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~~ 413 (472)
++..|++.. ..++.+.||.|+..+-+.++..|.+|+.+|||||.+.+.|||||+++++|..+... -.++..|..||+|
T Consensus 819 ~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVG 898 (1139)
T COG1197 819 KAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVG 898 (1139)
T ss_pred HHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccC
Confidence 999998432 56789999999999999999999999999999999999999999999999877654 5788999999999
Q ss_pred cCCCcceEEEEEcCCC-----hHHHHHHHHHHHHcCCCCCHHHHhchhhc
Q 012059 414 QMGDEGTAIVFVNEEN-----KNLFQELVDILKSSGAGIPRELINSRYTV 458 (472)
Q Consensus 414 R~g~~g~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 458 (472)
|..+.+.||+++.+.. ...--+.++-+...|..+--.+.++..+.
T Consensus 899 RS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRG 948 (1139)
T COG1197 899 RSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRG 948 (1139)
T ss_pred CccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhccc
Confidence 9999999999999653 11222223334456777766666666553
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.98 E-value=9.9e-30 Score=262.56 Aligned_cols=311 Identities=14% Similarity=0.147 Sum_probs=202.5
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
..|+|+|..+......+..+++.||||+|||.+++..+...+.. +...+++|..||+++++|+++.+..+..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--------~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--------GLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 37999999886554456779999999999999877665543222 3456899999999999999998876443
Q ss_pred CC--CCeEEEEEcCcchHHH--------------------HHHHh----c---CCCEEEeChHHHHHHHHcCC-CCCCC-
Q 012059 175 GL--PFKTALVVGGDAMARQ--------------------VYRIQ----Q---GVELIVGTPGRLIDLLMKHD-IELDD- 223 (472)
Q Consensus 175 ~~--~~~~~~~~~g~~~~~~--------------------~~~~~----~---~~~I~i~Tp~~l~~~~~~~~-~~~~~- 223 (472)
.. ...+...+|....... ...+. + -.+|+|||...++.-..... ..+..
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 21 2345555554331110 00111 1 16899999998875443321 11222
Q ss_pred ---eeEEEEeccchhhhcCcHHHHHHHHHhC--CCCceEeecccccHHHHHH-HhhhcCC-cE-------EEEe-CCC--
Q 012059 224 ---IRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKM-SSSISKD-IV-------VVSV-GKP-- 286 (472)
Q Consensus 224 ---~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~-~~~~~~~-~~-------~i~~-~~~-- 286 (472)
-++|||||+|.+ +......+..+++.+ ....+|+||||+|...... .+.+... .. .+.. ...
T Consensus 437 ~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~ 515 (878)
T PRK09694 437 GLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGA 515 (878)
T ss_pred hhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccc
Confidence 248999999987 332334555555554 4567999999999877643 3322111 00 0000 000
Q ss_pred -----CCC----ccceeEEEEEe--cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc--CCeEEEEcC
Q 012059 287 -----NMP----NKAVKQLAIWV--ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--GMKALSIHG 353 (472)
Q Consensus 287 -----~~~----~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~--~~~~~~~~~ 353 (472)
... ........... ........+++.+.+....++++|||||+...+..+++.|++.. ...+..+||
T Consensus 516 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHs 595 (878)
T PRK09694 516 QRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHA 595 (878)
T ss_pred eeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeC
Confidence 000 00000001111 11112234444444433456789999999999999999998433 257999999
Q ss_pred CCCHHHHH----HHHHHH-hcCC---CcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCC
Q 012059 354 EKPMKERR----EIMRSF-LVGE---VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD 417 (472)
Q Consensus 354 ~~~~~~r~----~~~~~f-~~g~---~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~ 417 (472)
.++..+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999994 567778 5665 4699999999999999 57999998888 7899999999999985
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.3e-30 Score=257.55 Aligned_cols=319 Identities=19% Similarity=0.209 Sum_probs=240.8
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|.-+.-.+..| -|..+.||+|||+++.+|++...+. +..+-|++||..||.|.++++..
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHH
Confidence 455 7888888877666565 4999999999999999999744333 33477999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcCC------CCCCCeeEEEEeccchhhhc------
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQR------ 238 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~~------~~~~~~~~iVvDE~h~~~~~------ 238 (472)
+...+++++.++.|+.+..+..... .++|+++|++.| .+++..+. .....+.++||||+|.++-.
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpL 222 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPL 222 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCce
Confidence 9999999999999988777654443 489999999999 88886543 23567899999999997510
Q ss_pred ----------CcHHHHHHHHHhCC---------C----------------------------------------------
Q 012059 239 ----------GFRDQVMQIFRAIS---------L---------------------------------------------- 253 (472)
Q Consensus 239 ----------~~~~~~~~i~~~~~---------~---------------------------------------------- 253 (472)
.....+..+...+. .
T Consensus 223 iiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~ 302 (830)
T PRK12904 223 IISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFK 302 (830)
T ss_pred eeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 01112222222110 0
Q ss_pred ---------------------------------------------------------------CceEeecccccHHHHHH
Q 012059 254 ---------------------------------------------------------------PQILMYSATISQEVEKM 270 (472)
Q Consensus 254 ---------------------------------------------------------------~~~i~~SAT~~~~~~~~ 270 (472)
.++.+||+|...+..++
T Consensus 303 ~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 382 (830)
T PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382 (830)
T ss_pred cCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH
Confidence 13455666665555555
Q ss_pred HhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEE
Q 012059 271 SSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALS 350 (472)
Q Consensus 271 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~ 350 (472)
.+.+..+.+.+....+.... -..-.++.....|...+...+.+....+.|+||||+|...++.++..|. ..+++...
T Consensus 383 ~~iY~l~vv~IPtnkp~~r~--d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~-~~gi~~~v 459 (830)
T PRK12904 383 REIYNLDVVVIPTNRPMIRI--DHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLK-KAGIPHNV 459 (830)
T ss_pred HHHhCCCEEEcCCCCCeeee--eCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCceEe
Confidence 55554444443322211110 0112334556678888888887766677899999999999999999998 78999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC--------------------------------------cE
Q 012059 351 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV--------------------------------------RQ 392 (472)
Q Consensus 351 ~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~--------------------------------------~~ 392 (472)
+|+. +.+|+..+..|..+...|+|||++++||+||+-- =+
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9995 7799999999999999999999999999998632 26
Q ss_pred EEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 393 VIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 393 VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
||--..|.|..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 88888899999999999999999999999999998874
No 93
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=253.84 Aligned_cols=314 Identities=18% Similarity=0.190 Sum_probs=230.5
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
..+| +|-.+|++||-.+..|.+++|.|+|.+|||+++..++...- ..+.+++|-+|-++|.+|-++.++
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq----------~h~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ----------KHMTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH----------hhccceEecchhhhhccchHHHHH
Confidence 3455 78899999999999999999999999999999877665321 357789999999999999999988
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHh
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~ 250 (472)
.-+...+ .++|+.. +...+..+|+|.|.|.+++.++.--+.++.+||+||+|.+.+...+-.+++++-.
T Consensus 362 ~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 362 ETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred Hhccccc----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeee
Confidence 7765543 4555433 3356789999999999999998877899999999999999988877888888888
Q ss_pred C-CCCceEeecccccHHHHHHHhhhcCC-cEEEEeCCCCCCccceeEEEEEecc--------------------------
Q 012059 251 I-SLPQILMYSATISQEVEKMSSSISKD-IVVVSVGKPNMPNKAVKQLAIWVES-------------------------- 302 (472)
Q Consensus 251 ~-~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-------------------------- 302 (472)
+ +..++|++|||.|+. .+++.|+..- ...+.+......+..++++...-.+
T Consensus 431 lP~HV~~IlLSATVPN~-~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ 509 (1248)
T KOG0947|consen 431 LPRHVNFILLSATVPNT-LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKE 509 (1248)
T ss_pred ccccceEEEEeccCCCh-HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccc
Confidence 8 568999999999984 4566666431 1111111111111111111100000
Q ss_pred -------------------------------------hhHH--HHHHHHHHhcCC-CCCCEEEEECCchhHHHHHHHHh-
Q 012059 303 -------------------------------------NKKK--QKLFDILMSKQH-FTPPAVVYVGSRLGADLLSNAIS- 341 (472)
Q Consensus 303 -------------------------------------~~~~--~~l~~~l~~~~~-~~~~~lIf~~~~~~~~~l~~~L~- 341 (472)
..+. ..+++++..... .--|++|||-|+..|+..+++|.
T Consensus 510 ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred ccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhc
Confidence 0000 123333333221 22389999999999999999997
Q ss_pred -------------------------------------hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 012059 342 -------------------------------------VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 384 (472)
Q Consensus 342 -------------------------------------~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 384 (472)
......+.++||++=+--++-+.-.|..|-++||+||.++++|
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMG 669 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMG 669 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhh
Confidence 0112346689999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCC---------CHhHHHHhhcccccCCC--cceEEEEEcCC
Q 012059 385 VELLGVRQVIIFDMPN---------SIKEYVHQIGRASQMGD--EGTAIVFVNEE 428 (472)
Q Consensus 385 idi~~~~~VI~~~~p~---------s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~ 428 (472)
+|.|+- +||+-...+ .+-+|.||.|||||-|- .|.++++....
T Consensus 670 VNMPAR-tvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 670 VNMPAR-TVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred cCCCce-eEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999964 555433322 57899999999999985 48888887655
No 94
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=4.3e-31 Score=261.81 Aligned_cols=343 Identities=20% Similarity=0.204 Sum_probs=250.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHH--hhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAI--PSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i--~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
++....-..+..|...++.||.+++ +.++.++|++..+||+.|||+++.+.++..++.. ...++.+.|.
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---------rr~~llilp~ 278 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---------RRNVLLILPY 278 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---------hhceeEecce
Confidence 3333334456678899999999998 5677999999999999999999999999887762 4558999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc--CCCCCCCeeEEEEeccchhh
Q 012059 159 RELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--HDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 159 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~--~~~~~~~~~~iVvDE~h~~~ 236 (472)
...+..-...+..+...+|+.+.+.+|...... ..+..++.|||.|+-..+++. ....+..+++|||||.|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 999888888888888889999888886554332 234468999999998666654 23346678999999999999
Q ss_pred hcCcHHHHHHHHHhC------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecch-------
Q 012059 237 QRGFRDQVMQIFRAI------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN------- 303 (472)
Q Consensus 237 ~~~~~~~~~~i~~~~------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------- 303 (472)
+.+.+..++.++.++ ...|+|+||||+++ +..+..++.............. .+.+.--......+
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL~~~L~A~~y~t~fRPv~L-~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPN-NSLLQDWLDAFVYTTRFRPVPL-KEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCC-hHHHHHHhhhhheecccCcccc-hhccCCCcccccchhhHHHHH
Confidence 999888888887776 34579999999997 5555544432222111111000 00000000000000
Q ss_pred -----------hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHh-------------------------------
Q 012059 304 -----------KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAIS------------------------------- 341 (472)
Q Consensus 304 -----------~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~------------------------------- 341 (472)
...+.+..+..+....+..+||||+++..|+.++..+.
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 01123333333333445579999999999999886554
Q ss_pred ------hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEec----CCCCHhHHHHhhcc
Q 012059 342 ------VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD----MPNSIKEYVHQIGR 411 (472)
Q Consensus 342 ------~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~----~p~s~~~~~Qr~GR 411 (472)
+...+.+.++|.+++.++|+.+...|++|.+.|++||++++.|+|+|..+++|-.- ...+..+|.||+||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 12235677999999999999999999999999999999999999999998888643 34477899999999
Q ss_pred cccCCC--cceEEEEEcCCChHHHHHHHH
Q 012059 412 ASQMGD--EGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 412 ~~R~g~--~g~~~~~~~~~~~~~~~~l~~ 438 (472)
|||+|- .|.+++++.+.+.+...+++.
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHHHh
Confidence 999985 499999999999877765543
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1e-29 Score=255.79 Aligned_cols=319 Identities=19% Similarity=0.243 Sum_probs=232.5
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|.-+.-.+..|+ |..+.||+|||+++.+|++...+. |..+-|++||.-||.|-++++..
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----------G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT----------GKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc----------CCCeEEEeccHHHHHhhHHHHHH
Confidence 455 78888988876666665 999999999999999999877655 67799999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHH-HHHHcC------CCCCCCeeEEEEeccchhhhc------
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLI-DLLMKH------DIELDDIRMFVLDEVDCMLQR------ 238 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~-~~~~~~------~~~~~~~~~iVvDE~h~~~~~------ 238 (472)
+...+|+++.++.++....+. .-.-.++|+++|...|- +++..+ ......+.+.||||+|.++-.
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r--~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEK--RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHH--HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 999999999999887655542 22346899999998773 344321 112346789999999986510
Q ss_pred -------C---cHHHHHHHHHhCC--------------------CC----------------------------------
Q 012059 239 -------G---FRDQVMQIFRAIS--------------------LP---------------------------------- 254 (472)
Q Consensus 239 -------~---~~~~~~~i~~~~~--------------------~~---------------------------------- 254 (472)
. ....+..+...+. ..
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 0 1111111111110 00
Q ss_pred ---------------------------------------------------------------------------ceEee
Q 012059 255 ---------------------------------------------------------------------------QILMY 259 (472)
Q Consensus 255 ---------------------------------------------------------------------------~~i~~ 259 (472)
++.+|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 23344
Q ss_pred cccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHH
Q 012059 260 SATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNA 339 (472)
Q Consensus 260 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~ 339 (472)
|+|...+..++.+.+..+.+.+....+... .-..-..+.....+...+...+......+.|+||||+|...++.++..
T Consensus 382 TGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r--~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 382 TGTAKTEEEEFREIYNMEVITIPTNRPVIR--KDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCCCHHHHHHHHHHhCCCEEEcCCCCCeee--eeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 444443333333333333322211111100 001112334556677888888877767788999999999999999999
Q ss_pred HhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---CCc-----EEEEecCCCCHhHHHHhhcc
Q 012059 340 ISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---GVR-----QVIIFDMPNSIKEYVHQIGR 411 (472)
Q Consensus 340 L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---~~~-----~VI~~~~p~s~~~~~Qr~GR 411 (472)
|. ..+++...+|+++...++..+.+.++.|. |+|||++++||+||+ ++. +||+++.|.|...|.|++||
T Consensus 460 L~-~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 460 LD-EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred HH-HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhh
Confidence 98 78999999999999888888888777777 999999999999995 788 99999999999999999999
Q ss_pred cccCCCcceEEEEEcCCCh
Q 012059 412 ASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 412 ~~R~g~~g~~~~~~~~~~~ 430 (472)
+||.|.+|.+..|++.+|.
T Consensus 537 tGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 537 SGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred hccCCCCcceEEEEeccch
Confidence 9999999999999998864
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=9.5e-29 Score=257.65 Aligned_cols=318 Identities=14% Similarity=0.152 Sum_probs=219.8
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.+++||.+++..+. .|.+.|+...+|.|||+.. +.++.++... .+....+|||||. .+..||.+++.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~------~~~~gp~LIVvP~-SlL~nW~~Ei~k 240 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEY------RGITGPHMVVAPK-STLGNWMNEIRR 240 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHh------cCCCCCEEEEeCh-HHHHHHHHHHHH
Confidence 68999999998875 6788999999999999964 3444444321 1334569999996 555779999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHH---HhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYR---IQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
++.. +.+..++|.......... .....+|+|+|++.+...... +.-..+++|||||||++-+. ...+...+
T Consensus 241 w~p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskal 314 (1033)
T PLN03142 241 FCPV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTM 314 (1033)
T ss_pred HCCC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHH
Confidence 9754 556666665443222211 123589999999998664322 22235789999999998544 45666777
Q ss_pred HhCCCCceEeeccccc-HHHHH---HHhhh-------------------------------------------------c
Q 012059 249 RAISLPQILMYSATIS-QEVEK---MSSSI-------------------------------------------------S 275 (472)
Q Consensus 249 ~~~~~~~~i~~SAT~~-~~~~~---~~~~~-------------------------------------------------~ 275 (472)
..+.....+++|||+- +.+.+ +...+ +
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 7777888899999952 11111 10000 0
Q ss_pred CCcE--EEEeCCCC--------------------CCcc--------------------------ceeEEEEEecchhHHH
Q 012059 276 KDIV--VVSVGKPN--------------------MPNK--------------------------AVKQLAIWVESNKKKQ 307 (472)
Q Consensus 276 ~~~~--~i~~~~~~--------------------~~~~--------------------------~~~~~~~~~~~~~~~~ 307 (472)
+... .+.+.-.. .... ........+..+.|..
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 0000 00000000 0000 0000000112234555
Q ss_pred HHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEecccccc
Q 012059 308 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG---EVPVIVATGILGRG 384 (472)
Q Consensus 308 ~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLvaT~~~~~G 384 (472)
.|..++......+.++|||+......+.|..+|. ..++.+..+||+++..+|..+++.|++. ..-+|++|.+++.|
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~-~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM-YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 6666666666677899999999999999999997 7799999999999999999999999853 34578999999999
Q ss_pred CCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEE--EEEcCC
Q 012059 385 VELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAI--VFVNEE 428 (472)
Q Consensus 385 idi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 428 (472)
||+..+++||+||++|++....|++||+.|.|+...|. .|+...
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999876554 444443
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.5e-29 Score=253.59 Aligned_cols=315 Identities=23% Similarity=0.232 Sum_probs=229.7
Q ss_pred HHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
....|| .|.++|++++-.+..|.+++++||||+|||+++..++...+.. +.+++|.+|.++|.+|.+++
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----------~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD----------GQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----------CCceEeccchhhhhhhHHHH
Confidence 345677 7899999999999999999999999999999988888776644 55699999999999999888
Q ss_pred HHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 169 AKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 169 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
+........-.+..++|+.. +..++.++|+|.|.|.+++.++...+.++.+||+||+|.+.+...+..++.++
T Consensus 182 l~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHH
Confidence 87655433112233444432 22567899999999999999988889999999999999999998888888888
Q ss_pred HhCCC-CceEeecccccHHHHHHHhhhc---CCcEE-EEeCCCCCCccceeEEEE-------EecchhH-----------
Q 012059 249 RAISL-PQILMYSATISQEVEKMSSSIS---KDIVV-VSVGKPNMPNKAVKQLAI-------WVESNKK----------- 305 (472)
Q Consensus 249 ~~~~~-~~~i~~SAT~~~~~~~~~~~~~---~~~~~-i~~~~~~~~~~~~~~~~~-------~~~~~~~----------- 305 (472)
..++. .++++||||+++ ..++..|+. ..++. +.......+ ..+++. .++...+
T Consensus 255 i~lP~~v~~v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~RpvP---L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEHRPVP---LEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HhcCCCCcEEEEeCCCCC-HHHHHHHHHhccCCCeEEEeecCCCCC---eEEEEecCCceeeeecccccchhhcchhhhh
Confidence 88855 599999999998 455666654 22222 222111111 111111 1111110
Q ss_pred ------------------------------------HHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhh-------
Q 012059 306 ------------------------------------KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV------- 342 (472)
Q Consensus 306 ------------------------------------~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~------- 342 (472)
...++..+.. ...-|+++|+-++..|+.++..+..
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~ 408 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTE 408 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCC
Confidence 0111222211 1234899999999999988776650
Q ss_pred --------------------hcC-------------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 012059 343 --------------------TTG-------------MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 389 (472)
Q Consensus 343 --------------------~~~-------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 389 (472)
..+ ..+.++|++|=+..+..+...|..|-++|+++|.+++.|+|.|.
T Consensus 409 ~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 409 EKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred cHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 011 12347999999999999999999999999999999999999996
Q ss_pred CcEEEEec---------CCCCHhHHHHhhcccccCCCc--ceEEEEEcCC
Q 012059 390 VRQVIIFD---------MPNSIKEYVHQIGRASQMGDE--GTAIVFVNEE 428 (472)
Q Consensus 390 ~~~VI~~~---------~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 428 (472)
- .|++.. .+-+..+|.|+.|||||-|.+ |.+++...+.
T Consensus 489 r-tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 489 R-TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred c-ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 4 455433 233789999999999999964 8888885443
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=8.5e-30 Score=245.25 Aligned_cols=333 Identities=20% Similarity=0.213 Sum_probs=238.1
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.+-|+|+.+|..+-.+.+++|.|.|.+|||.++..++...+.+ +.++++-.|-++|.+|-++++..-+..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 6789999999999999999999999999999999888887754 678999999999999999988776555
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCC
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 254 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~ 254 (472)
.|+ .+|+... ...+.-+|+|.+.|..++.++.--+..+.+||+||+|.|-+...+-.+++.+-.+ .+.
T Consensus 199 VGL----MTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 VGL----MTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred cce----eecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 443 3333222 2456789999999999999988889999999999999998877555555544444 678
Q ss_pred ceEeecccccHHHHHHHhhhc---CCcEEEEeCCCCCCccceeEE---------EEEecch-----hHHHHHHHHHHhc-
Q 012059 255 QILMYSATISQEVEKMSSSIS---KDIVVVSVGKPNMPNKAVKQL---------AIWVESN-----KKKQKLFDILMSK- 316 (472)
Q Consensus 255 ~~i~~SAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~-----~~~~~l~~~l~~~- 316 (472)
+.+++|||+|+ ..++++|+. ..|..+.... ..+..++++ +..++.. +.....+..+...
T Consensus 268 r~VFLSATiPN-A~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 268 RFVFLSATIPN-ARQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred eEEEEeccCCC-HHHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 99999999998 556677653 3443332211 111112222 1112111 1122222222211
Q ss_pred -----------------------------------CCCCCCEEEEECCchhHHHHHHHHhh-------------------
Q 012059 317 -----------------------------------QHFTPPAVVYVGSRLGADLLSNAISV------------------- 342 (472)
Q Consensus 317 -----------------------------------~~~~~~~lIf~~~~~~~~~l~~~L~~------------------- 342 (472)
.....|+|||+-|++.|+.++-.+.+
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 01124899999999999998866650
Q ss_pred -------------------hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ecC-
Q 012059 343 -------------------TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FDM- 398 (472)
Q Consensus 343 -------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~~- 398 (472)
.....+..+|+|+-+--++.+.-.|++|-+++|+||.+++.|+|.|+-.+|+- ||-
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 11224557999999999999999999999999999999999999996544442 221
Q ss_pred ---CCCHhHHHHhhcccccCCC--cceEEEEEcCCC-h-------------------HHHHHHHHHHHHcCCCCCHHHHh
Q 012059 399 ---PNSIKEYVHQIGRASQMGD--EGTAIVFVNEEN-K-------------------NLFQELVDILKSSGAGIPRELIN 453 (472)
Q Consensus 399 ---p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~-~-------------------~~~~~l~~~l~~~~~~~~~~l~~ 453 (472)
--|.-+|+||.|||||-|. .|.|++++++.- . -.+..+++.|+..+.. |+.+++
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRvEei~-pe~~l~ 583 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRVEEIS-PEYMLE 583 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHccCC-HHHHHH
Confidence 1166799999999999996 499999998752 1 1345566666666555 344443
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.2e-27 Score=209.89 Aligned_cols=312 Identities=19% Similarity=0.254 Sum_probs=225.9
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
++++.|+.+-..+. +.++.++.|-||+|||.. +...++..++ .|.++.+..|....|.+++..++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHH
Confidence 68999998876655 778999999999999984 6666666655 578899999999998888887777
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHh-
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA- 250 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~- 250 (472)
-... .....++|+....- ...++|+|...|+++.. .++++|+||+|.+--.. ...+..-.+.
T Consensus 167 aF~~--~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~a 229 (441)
T COG4098 167 AFSN--CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKA 229 (441)
T ss_pred hhcc--CCeeeEecCCchhc-------cccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHh
Confidence 6543 56677887765443 26899999988888754 47789999999864222 1222222222
Q ss_pred C-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHH-------HHHHHHHHhcCCCCCC
Q 012059 251 I-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK-------QKLFDILMSKQHFTPP 322 (472)
Q Consensus 251 ~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~l~~~~~~~~~ 322 (472)
. ....+|.+|||+++.++.-...- +...+.............-.+.|...-.+. ..|...+......+.|
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 2 56778999999998776544322 222222222211111122233444443332 3778888888888889
Q ss_pred EEEEECCchhHHHHHHHHhhhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCC--
Q 012059 323 AVVYVGSRLGADLLSNAISVTTG-MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP-- 399 (472)
Q Consensus 323 ~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p-- 399 (472)
++||+++....+.++..|++... ..+..+|+... .|.+.++.|++|++++||+|.+++||+.+|++++.+.-.--
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 99999999999999999964443 45578887654 78899999999999999999999999999999988875543
Q ss_pred CCHhHHHHhhcccccCCC--cceEEEEEcCCChHHHHHHHH
Q 012059 400 NSIKEYVHQIGRASQMGD--EGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 400 ~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~l~~ 438 (472)
.+.+..+|..||+||.-. .|.+..|..-..+.+.....+
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 578889999999999754 488888887766655544433
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=4.2e-28 Score=257.66 Aligned_cols=309 Identities=13% Similarity=0.163 Sum_probs=197.1
Q ss_pred CCCHHHHHHHhhHh-----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~-----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.++++|.+|+..+. ..++.+++++||||||.+++ .++.+++.. ....++|||+|+++|+.|+.+.+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~-------~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA-------KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc-------CccCeEEEEecHHHHHHHHHHHHH
Confidence 58999999998875 24679999999999998744 344444431 235689999999999999999998
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC-----CCCCCCeeEEEEeccchhhhc-------
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQR------- 238 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~-----~~~~~~~~~iVvDE~h~~~~~------- 238 (472)
.+..........+++.....+. .......|+|+|++++...+... ...+..+++||+||||+....
T Consensus 485 ~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 485 DTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred hcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 8743211111112211111110 11234789999999997765321 134678999999999995310
Q ss_pred --------CcHHHHHHHHHhCCCCceEeecccccHHHHHHH--------------hhhcC---CcEEEEeCC--CCC---
Q 012059 239 --------GFRDQVMQIFRAISLPQILMYSATISQEVEKMS--------------SSISK---DIVVVSVGK--PNM--- 288 (472)
Q Consensus 239 --------~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~~~~--------------~~~~~---~~~~i~~~~--~~~--- 288 (472)
.+...+..++..+. ...|+||||+......+. ..++. .+..+.... ...
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 12356667777664 578999999864222111 11111 111111100 000
Q ss_pred Ccccee-------EEE-EEecc---------------hhHHHHHHHHHHhc--CCCCCCEEEEECCchhHHHHHHHHhhh
Q 012059 289 PNKAVK-------QLA-IWVES---------------NKKKQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISVT 343 (472)
Q Consensus 289 ~~~~~~-------~~~-~~~~~---------------~~~~~~l~~~l~~~--~~~~~~~lIf~~~~~~~~~l~~~L~~~ 343 (472)
....+. ... ..... ......+...+.+. ....+++||||.++.+|+.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 000000 000 00000 00011111212111 122469999999999999999887642
Q ss_pred c-----C---CeEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhccccc
Q 012059 344 T-----G---MKALSIHGEKPMKERREIMRSFLVGEV-PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 414 (472)
Q Consensus 344 ~-----~---~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R 414 (472)
. + ..+..+||+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.+.+||++.++.|...|.||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 1 2 24566899886 56789999999876 689999999999999999999999999999999999999999
Q ss_pred CCC
Q 012059 415 MGD 417 (472)
Q Consensus 415 ~g~ 417 (472)
...
T Consensus 800 ~~~ 802 (1123)
T PRK11448 800 LCP 802 (1123)
T ss_pred CCc
Confidence 753
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.6e-27 Score=237.11 Aligned_cols=319 Identities=17% Similarity=0.196 Sum_probs=230.7
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|.-.--.+. +.-|..++||.|||++|.+|++..++. +..+.||+|+..||.|..+++..
T Consensus 79 lgm-~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~----------g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALT----------GKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred hCC-CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhc----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 455 67777765544443 446999999999999999999877654 44499999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcC-CCCC-----CCeeEEEEeccchhhhcC-----
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH-DIEL-----DDIRMFVLDEVDCMLQRG----- 239 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~-~~~~-----~~~~~iVvDE~h~~~~~~----- 239 (472)
+...+++++.++.++....+ ..-.-.++|+++||+.| .+++..+ .... ..+.++||||+|.++-..
T Consensus 146 l~~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPL 223 (908)
T PRK13107 146 LFEFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPL 223 (908)
T ss_pred HHHhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCce
Confidence 99999999999999877543 22223689999999999 8887765 3232 678899999999876211
Q ss_pred -----------cHHHHHHHHHhC--------------------CCC----------------------------------
Q 012059 240 -----------FRDQVMQIFRAI--------------------SLP---------------------------------- 254 (472)
Q Consensus 240 -----------~~~~~~~i~~~~--------------------~~~---------------------------------- 254 (472)
....+..+...+ ...
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~ 303 (908)
T PRK13107 224 IISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAAN 303 (908)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchh
Confidence 111111111111 011
Q ss_pred --------------------------------------------------------------------------------
Q 012059 255 -------------------------------------------------------------------------------- 254 (472)
Q Consensus 255 -------------------------------------------------------------------------------- 254 (472)
T Consensus 304 ~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (908)
T PRK13107 304 ISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQ 383 (908)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHh
Confidence
Q ss_pred --ceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh
Q 012059 255 --QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 255 --~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~ 332 (472)
++-+||+|...+..++.+.+..+.+.+....+.... -..-..+.....|...+.+.+......+.|+||||.|...
T Consensus 384 Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~--d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 384 YEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRK--DMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccce--eCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 122223333222222222222222222111110000 0111234455677788888888877888999999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC-----------------------
Q 012059 333 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG----------------------- 389 (472)
Q Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~----------------------- 389 (472)
++.++..|. ..++....+|+++.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 462 se~ls~~L~-~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~ 538 (908)
T PRK13107 462 SELLARLMV-KEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIK 538 (908)
T ss_pred HHHHHHHHH-HCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHH
Confidence 999999998 78999999999999999999999999999 9999999999999861
Q ss_pred --------------CcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 390 --------------VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 390 --------------~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
==+||--..+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 539 ~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 539 ADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12688888899999999999999999999999999998875
No 102
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.96 E-value=5.5e-27 Score=226.84 Aligned_cols=318 Identities=16% Similarity=0.199 Sum_probs=230.4
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.+++||.+.++++. .|-|.|+...+|.|||+. .+.++.++... .+..+..||+||...|.+ |..++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~------~~~~GPfLVi~P~StL~N-W~~Ef~r 238 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGR------KGIPGPFLVIAPKSTLDN-WMNEFKR 238 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHh------cCCCCCeEEEeeHhhHHH-HHHHHHH
Confidence 68999999999876 678899999999999985 45555555431 133444899999999866 8899999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHH-H--hcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYR-I--QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
|+.. +.+++++|.......... + ....+|+|+|++..+.--. .+.--.++|+||||||++-+. ...+..++
T Consensus 239 f~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~--~s~L~~~l 312 (971)
T KOG0385|consen 239 FTPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNE--KSKLSKIL 312 (971)
T ss_pred hCCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcch--hhHHHHHH
Confidence 9865 678888887654433322 1 2358999999999876422 222335789999999999655 56777899
Q ss_pred HhCCCCceEeecccccH-H------------------HHHHHhhhcC---------------------------------
Q 012059 249 RAISLPQILMYSATISQ-E------------------VEKMSSSISK--------------------------------- 276 (472)
Q Consensus 249 ~~~~~~~~i~~SAT~~~-~------------------~~~~~~~~~~--------------------------------- 276 (472)
+.+.....+++|+|+-. . ...+..|+..
T Consensus 313 r~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 313 REFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred HHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 99999999999999310 0 0111111100
Q ss_pred -Cc--EEEEeCCC------------------------------------------------CCCccceeEEEEEecchhH
Q 012059 277 -DI--VVVSVGKP------------------------------------------------NMPNKAVKQLAIWVESNKK 305 (472)
Q Consensus 277 -~~--~~i~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~ 305 (472)
.. +.+.++-. ..+......--..+..+.|
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGK 472 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGK 472 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcc
Confidence 00 00100000 0000001111112334556
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEecccc
Q 012059 306 KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE---VPVIVATGILG 382 (472)
Q Consensus 306 ~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~~ 382 (472)
...|-.+|......+++||||.......+.+.+++- ..++.+..+.|.++-++|...++.|.... .-.|++|.+.+
T Consensus 473 m~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~-~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 473 MLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM-LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGG 551 (971)
T ss_pred eehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH-hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccc
Confidence 667777777777888999999999999999998887 78999999999999999999999998653 44689999999
Q ss_pred ccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceE--EEEEcCC
Q 012059 383 RGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 428 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 428 (472)
-|||+..+++||.||..|++..-.|++-||+|.|+...+ +-|+++.
T Consensus 552 LGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 552 LGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999999987554 4555554
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=8.5e-27 Score=200.88 Aligned_cols=164 Identities=31% Similarity=0.536 Sum_probs=141.0
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 177 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 177 (472)
||+|.++++.+.+++++++.+|||+|||++++++++..+.+ .+..++++++|+++|++|..+.+..++...+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~--------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE--------GKDARVLIIVPTRALAEQQFERLRKFFSNTN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc--------CCCceEEEEeecccccccccccccccccccc
Confidence 68999999999999999999999999999999999988765 2345899999999999999999999988777
Q ss_pred CeEEEEEcCcchH-HHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC---CC
Q 012059 178 FKTALVVGGDAMA-RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SL 253 (472)
Q Consensus 178 ~~~~~~~~g~~~~-~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~---~~ 253 (472)
+++..++++.... +....+..+++|+|+||++|.+.+.....++.++++||+||+|.+....+...+..++..+ .+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCC
Confidence 8889998888755 3333445679999999999999999865677789999999999999888888888888777 46
Q ss_pred CceEeecccccHHHHH
Q 012059 254 PQILMYSATISQEVEK 269 (472)
Q Consensus 254 ~~~i~~SAT~~~~~~~ 269 (472)
.+++++|||++..++.
T Consensus 153 ~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLPSNVEK 168 (169)
T ss_dssp SEEEEEESSSTHHHHH
T ss_pred CcEEEEeeCCChhHhh
Confidence 8999999999966654
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=9e-25 Score=210.26 Aligned_cols=308 Identities=18% Similarity=0.227 Sum_probs=213.3
Q ss_pred HHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH-HHhcCCCC
Q 012059 100 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPF 178 (472)
Q Consensus 100 ~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~ 178 (472)
+-.+.+..+.+++-++|.|+||||||+ .+|-+ |.+.++ ...+++.+.-|.|--|..+++... +.+..+|-
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~-----~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGF-----ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhccc-----ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 445666667788889999999999998 56644 222222 122337888899977776555443 33333333
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc--CcHHHHHHHHHhCCCCce
Q 012059 179 KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR--GFRDQVMQIFRAISLPQI 256 (472)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~--~~~~~~~~i~~~~~~~~~ 256 (472)
.+....--.+. ..+...|.+.|.|.|++.+..+. .++.+++||+||||+-.-. -....+.+++++.+..++
T Consensus 126 ~VGY~IRFed~------ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 126 EVGYTIRFEDS------TSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred eeeeEEEeccc------CCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 33322221111 11346899999999999887766 4889999999999963211 123444555555577899
Q ss_pred EeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHh--cCCCCCCEEEEECCchhHH
Q 012059 257 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS--KQHFTPPAVVYVGSRLGAD 334 (472)
Q Consensus 257 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~lIf~~~~~~~~ 334 (472)
|.+|||+.- ..+...|..-++....+.. .+ ++..+..-+..+..+..+..+.+ .....+-+|||...+++.+
T Consensus 199 IimSATlda--~kfS~yF~~a~i~~i~GR~-fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 199 IIMSATLDA--EKFSEYFNNAPILTIPGRT-FP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred EEEeeeecH--HHHHHHhcCCceEeecCCC-Cc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 999999983 4455555554554433332 22 44444443444444443333333 2244567999999999999
Q ss_pred HHHHHHhhhcCC-------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC---------
Q 012059 335 LLSNAISVTTGM-------KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM--------- 398 (472)
Q Consensus 335 ~l~~~L~~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~--------- 398 (472)
.+++.|.+..+. -+..+||.++.+++.++.+.-..|..+|++||++++..+.|+++.+||+-++
T Consensus 273 ~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~ 352 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPR 352 (674)
T ss_pred HHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccc
Confidence 999998743221 2467999999999999988888899999999999999999999999998443
Q ss_pred ---------CCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 399 ---------PNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 399 ---------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
|-|-.+-.||.|||||.| +|+|+-+|++.+.
T Consensus 353 ~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 353 TGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred cCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 558889999999999996 8999999998764
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.3e-24 Score=219.59 Aligned_cols=307 Identities=18% Similarity=0.219 Sum_probs=211.6
Q ss_pred HHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH-HhcCCCC
Q 012059 100 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL-LGKGLPF 178 (472)
Q Consensus 100 ~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~ 178 (472)
...+.+..+..+.-++|.|+||||||+ .+|.+.. +..+ ..+..+.+.-|.|--|..+++.+.. ++...|-
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~ll--e~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLL--EEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHH--hhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 344555566677889999999999998 5665532 2111 3456788888999777666555543 3333343
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-Cc-HHHHHHHHHhCC-CCc
Q 012059 179 KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GF-RDQVMQIFRAIS-LPQ 255 (472)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~-~~-~~~~~~i~~~~~-~~~ 255 (472)
.|....-.++. ......|-++|.|.|++.+..+.. ++.+++||+||+|+=.-. .+ -..+..++...+ ..+
T Consensus 125 ~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 125 TVGYSIRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeeEEEEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 33332222221 124578999999999999987764 899999999999974311 11 123334444444 689
Q ss_pred eEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEec-chh-HHHHHHHHHHh-cCCCCCCEEEEECCchh
Q 012059 256 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE-SNK-KKQKLFDILMS-KQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 256 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~l~~-~~~~~~~~lIf~~~~~~ 332 (472)
+|.||||+.. +.+.+.+..-++....+. ..+ ++..+.... ... -...+...+.. .....+.+|||.+...+
T Consensus 198 iIimSATld~--~rfs~~f~~apvi~i~GR-~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 198 LIIMSATLDA--ERFSAYFGNAPVIEIEGR-TYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred EEEEecccCH--HHHHHHcCCCCEEEecCC-ccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 9999999984 445555554444433332 222 333331111 222 22333333333 23446789999999999
Q ss_pred HHHHHHHHhh-hc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC-----------
Q 012059 333 ADLLSNAISV-TT--GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM----------- 398 (472)
Q Consensus 333 ~~~l~~~L~~-~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~----------- 398 (472)
.+.+++.|.+ .. ...+..+||.++.+++.++++.-..|+.+|++||++++.+|.||++++||+-+.
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 9999999984 23 477899999999999999888777787789999999999999999999998543
Q ss_pred -------CCCHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 399 -------PNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 399 -------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
|-|-++..||.|||||.+ +|.||-++++++
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred ceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 447788999999999985 899999999854
No 106
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.93 E-value=1.3e-25 Score=227.37 Aligned_cols=384 Identities=15% Similarity=0.159 Sum_probs=259.3
Q ss_pred CCCCCCccccCccccCCC-cccccCCCHHHHHHHHHhcCce---eeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCH
Q 012059 24 PERLPATDECFYVRESDE-NSGFQSLTIGQTDSLRKRLEIN---VKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTP 99 (472)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~ 99 (472)
.+.+.+|+..-|....+| ...+......+++.+..+-+.. ..+...-++...|..+...+..+. | .+++.
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LRd 373 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG-----G-NELRD 373 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc-----c-chhhh
Confidence 567888888889888887 4445555677777776554322 112222233334544444443332 2 58999
Q ss_pred HHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 100 VQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 100 ~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
||.+.+++++ .+.|+|+...+|.|||+. .+..+..+.... .-.+..|||+|...+.. |.+++..+.
T Consensus 374 yQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~------~~~gpflvvvplst~~~-W~~ef~~w~-- 443 (1373)
T KOG0384|consen 374 YQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL------QIHGPFLVVVPLSTITA-WEREFETWT-- 443 (1373)
T ss_pred hhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh------hccCCeEEEeehhhhHH-HHHHHHHHh--
Confidence 9999998876 889999999999999964 334444443311 12334899999888766 888888886
Q ss_pred CCCeEEEEEcCcchHHHHHHHh----c-----CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHH
Q 012059 176 LPFKTALVVGGDAMARQVYRIQ----Q-----GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 246 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~----~-----~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~ 246 (472)
.+++++++|.....+.++... . .++++++|++.++.--. .+.--.+.++++||||++-+. ...+..
T Consensus 444 -~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~l~~ 518 (1373)
T KOG0384|consen 444 -DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESKLYE 518 (1373)
T ss_pred -hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HHHHHH
Confidence 478888888777666555432 2 37899999988754322 112224678999999999544 566777
Q ss_pred HHHhCCCCceEeecccccH-HHHHHHhhh-------------------------------------------------cC
Q 012059 247 IFRAISLPQILMYSATISQ-EVEKMSSSI-------------------------------------------------SK 276 (472)
Q Consensus 247 i~~~~~~~~~i~~SAT~~~-~~~~~~~~~-------------------------------------------------~~ 276 (472)
.+..+.....+++|+|+-. .+.++...+ ..
T Consensus 519 ~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~ 598 (1373)
T KOG0384|consen 519 SLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPP 598 (1373)
T ss_pred HHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCC
Confidence 7888888888999999421 122211100 00
Q ss_pred CcE-EEEe-----------------------CCCCCCccc----------eeEEEEEe----------------------
Q 012059 277 DIV-VVSV-----------------------GKPNMPNKA----------VKQLAIWV---------------------- 300 (472)
Q Consensus 277 ~~~-~i~~-----------------------~~~~~~~~~----------~~~~~~~~---------------------- 300 (472)
... .+.+ +........ -.+-+...
T Consensus 599 k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~l 678 (1373)
T KOG0384|consen 599 KEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQAL 678 (1373)
T ss_pred CcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHH
Confidence 000 0000 000000000 00000000
Q ss_pred -cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEE
Q 012059 301 -ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG---EVPVIV 376 (472)
Q Consensus 301 -~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv 376 (472)
.++.|...|-.+|......+++||||.......+.|+++|. ..+++...+.|.+..+.|+..++.|.+. .+..|+
T Consensus 679 I~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~-~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLL 757 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLS-LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLL 757 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHH-HcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEE
Confidence 01111122223444456678899999999999999999998 8899999999999999999999999853 566899
Q ss_pred EeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcc--eEEEEEcCCC
Q 012059 377 ATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEG--TAIVFVNEEN 429 (472)
Q Consensus 377 aT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~ 429 (472)
||.+.+-|||+..+++||+||..|++..-+|+..||+|.|++. .+|-|++...
T Consensus 758 STRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 758 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred ecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999999999999999875 4566777653
No 107
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.8e-24 Score=217.90 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=122.7
Q ss_pred EecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012059 299 WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 378 (472)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 378 (472)
+.....|...+...+......+.|+||||+|...++.++..|. ..++....+|+ .+.+|+..+..|..+...|+|||
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~-~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLR-AKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHH-HcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3444567788888887776778899999999999999999998 78999999997 57799999999999999999999
Q ss_pred ccccccCCCC---CCc-----EEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHH----HHHHHHHHHcCC
Q 012059 379 GILGRGVELL---GVR-----QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF----QELVDILKSSGA 445 (472)
Q Consensus 379 ~~~~~Gidi~---~~~-----~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~~ 445 (472)
++++||+||+ .+. +||.++.|.|...|.|++||+||.|.+|.+.+|++..|.-+. ..+..+++..+.
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 9999999999 443 458899999999999999999999999999999998875321 246666666654
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.92 E-value=1.1e-23 Score=218.62 Aligned_cols=323 Identities=20% Similarity=0.221 Sum_probs=213.6
Q ss_pred CCCHHHHHHHhhHhc---CC-cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALS---GK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~---~~-~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
..+++|..++..+.. .. .+++.||||+|||.+.+.+++..+.+. .....+++++.|++.+.+++++.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------IKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc------ccccceEEEEccHHHHHHHHHHHHHh
Confidence 348899999988873 24 788999999999999888888765541 12578899999999999999999998
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHH---------------hcCCCEEEeChHHHHHHHHc-CCCC-C--CCeeEEEEecc
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRI---------------QQGVELIVGTPGRLIDLLMK-HDIE-L--DDIRMFVLDEV 232 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~I~i~Tp~~l~~~~~~-~~~~-~--~~~~~iVvDE~ 232 (472)
............++. ......... .....+.++||......... .... + -..+++|+||+
T Consensus 269 ~~~~~~~~~~~~h~~-~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 269 IFGLFSVIGKSLHSS-SKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhccccccccccccc-ccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 765433222211222 111111100 00134555555554442211 1111 1 12468999999
Q ss_pred chhhhcCcHHHHHHHHHhC--CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCC---CccceeEE-EEEecchhHH
Q 012059 233 DCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM---PNKAVKQL-AIWVESNKKK 306 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~-~~~~~~~~~~ 306 (472)
|.+.+......+..++..+ ....++++|||+|..+.+...........+....... ....+.+. ....... ..
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~ 426 (733)
T COG1203 348 HLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDG-PQ 426 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhh-hh
Confidence 9887664344444454444 5789999999999988887777665544433321110 00001110 0000000 00
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEecccc
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL----VGEVPVIVATGILG 382 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~ 382 (472)
..+..........+.+++|.|||...|..++..|+ ..+..+..+||.+...+|.+.++.+. .+...|+|||++++
T Consensus 427 ~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk-~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIE 505 (733)
T COG1203 427 EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLK-EKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIE 505 (733)
T ss_pred HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHH-hcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEE
Confidence 12333344445567799999999999999999998 44447999999999999999888655 46788999999999
Q ss_pred ccCCCCCCcEEEEecCCCCHhHHHHhhcccccCC--CcceEEEEEcCCCh
Q 012059 383 RGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG--DEGTAIVFVNEENK 430 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 430 (472)
.|+|+. .+.+|-=-.| ++..+||+||++|.| ..|.++++......
T Consensus 506 agvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 506 AGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred EEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 999966 5666544444 899999999999999 56888888776543
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=6e-23 Score=205.41 Aligned_cols=286 Identities=22% Similarity=0.315 Sum_probs=196.5
Q ss_pred HHHHHHC-CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHH
Q 012059 86 LQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 164 (472)
Q Consensus 86 ~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q 164 (472)
.+...+. |+ .|+..|+-....+..|+++-+.||||.|||+ |.+.+...+. .++.++++++||..|+.|
T Consensus 72 ~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a---------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 72 EEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLA---------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHH---------hcCCeEEEEecCHHHHHH
Confidence 3444444 55 9999999999999999999999999999997 4443333322 356899999999999999
Q ss_pred HHHHHHHHhcCCC-CeEEEEEcCcch----HHHHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 012059 165 VEEQAKLLGKGLP-FKTALVVGGDAM----ARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
+++.+..++...+ ..+..++.+.-. .+....+.+ +.||+|+|.+-|......- .-.++++|++|++|.++-.
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhc
Confidence 9999999986655 444443444422 223334444 5999999987765554421 1136899999999987632
Q ss_pred C-----------cHH-----------------------HHHHHH---------HhCCCCceEeecccccHHH--HHHHhh
Q 012059 239 G-----------FRD-----------------------QVMQIF---------RAISLPQILMYSATISQEV--EKMSSS 273 (472)
Q Consensus 239 ~-----------~~~-----------------------~~~~i~---------~~~~~~~~i~~SAT~~~~~--~~~~~~ 273 (472)
+ |.. .+.++. ++.+..+++..|||....- ..+.+.
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 2 111 111111 1113457889999975322 112222
Q ss_pred hcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECC---chhHHHHHHHHhhhcCCeEEE
Q 012059 274 ISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGS---RLGADLLSNAISVTTGMKALS 350 (472)
Q Consensus 274 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~---~~~~~~l~~~L~~~~~~~~~~ 350 (472)
++ -..++.......++...+... .....+..++..... ..|||++. ++.++.++++|+ ..|+++..
T Consensus 299 Ll----gFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~---GgLIfV~~d~G~e~aeel~e~Lr-~~Gi~a~~ 367 (1187)
T COG1110 299 LL----GFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGD---GGLIFVPIDYGREKAEELAEYLR-SHGINAEL 367 (1187)
T ss_pred Hh----CCccCccchhhhheeeeeccC---ccHHHHHHHHHHhCC---CeEEEEEcHHhHHHHHHHHHHHH-hcCceEEE
Confidence 22 223344444445555555444 344455555544332 58999999 899999999998 88999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEec----cccccCCCCC-CcEEEEecCCC
Q 012059 351 IHGEKPMKERREIMRSFLVGEVPVIVATG----ILGRGVELLG-VRQVIIFDMPN 400 (472)
Q Consensus 351 ~~~~~~~~~r~~~~~~f~~g~~~vLvaT~----~~~~Gidi~~-~~~VI~~~~p~ 400 (472)
+|+. ..+.++.|..|++++||++. ++-||||+|. ++++|+++.|+
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9983 25689999999999998765 7899999996 89999999883
No 110
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.3e-23 Score=198.85 Aligned_cols=309 Identities=18% Similarity=0.193 Sum_probs=216.7
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH-HHHhcCC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGL 176 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~-~~~~~~~ 176 (472)
+++-.+.+.++..++-++|.|.||||||+ .+|-+-+ +.+. ...+.++-+-.|.|--|..++... .+.+-.+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~--EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLY--EAGY----TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHH--hccc----ccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 55666777778888999999999999998 6675532 2211 123455777789998887755433 3333222
Q ss_pred CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc--CcHHHHHHHHHhCCCC
Q 012059 177 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR--GFRDQVMQIFRAISLP 254 (472)
Q Consensus 177 ~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~--~~~~~~~~i~~~~~~~ 254 (472)
|-. +|.....+. ......-|-++|.|+|++-+.... .+.++++||+||||.-.-. -....+..|.+..+..
T Consensus 339 G~e----VGYsIRFEd--cTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 339 GHE----VGYSIRFED--CTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred ccc----cceEEEecc--ccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 211 222121111 111335688999999998776554 6889999999999963211 1234555666666899
Q ss_pred ceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcC--CCCCCEEEEECCchh
Q 012059 255 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLG 332 (472)
Q Consensus 255 ~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~lIf~~~~~~ 332 (472)
+++..|||+.. ..+...|..-+++..++.... +..++...+..+..+.....+.+.. ...+-+|||...++.
T Consensus 412 KllIsSAT~DA--ekFS~fFDdapIF~iPGRRyP----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATMDA--EKFSAFFDDAPIFRIPGRRYP----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeeccccCH--HHHHHhccCCcEEeccCcccc----eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 99999999974 455555555666655544332 4445555555555555555554422 234679999999988
Q ss_pred HHHHHHHHhh---hc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC------
Q 012059 333 ADLLSNAISV---TT-----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM------ 398 (472)
Q Consensus 333 ~~~l~~~L~~---~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~------ 398 (472)
.+.....|.+ .+ .+-+..+|+.++.+.+..+++.-.+|-.+|++||++++..|.|+++.+||+-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 8877776652 12 345788999999999999999888999999999999999999999999998553
Q ss_pred ------------CCCHhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 399 ------------PNSIKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 399 ------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
|-|-+...||.|||||.| +|+|+-+++..
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 447788899999999997 89999999844
No 111
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.3e-23 Score=201.85 Aligned_cols=319 Identities=17% Similarity=0.188 Sum_probs=223.4
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.+++||++++.++. .+...|+...+|.|||+. .+..+..+.... .--..+|||||. .+..||.+++..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~------k~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG------KLTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc------cccCceEEEccH-HHHHHHHHHHHH
Confidence 57899999998876 566799999999999974 444444444321 112569999996 566779999999
Q ss_pred HhcCCCCeEEEEEcCcchH--------HHH-----HHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 012059 172 LGKGLPFKTALVVGGDAMA--------RQV-----YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~--------~~~-----~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
+... +++..+++..+.. ... +......+|+|+|++.+.-. ...+.--.++|+|+||.|++-++
T Consensus 277 w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 277 WWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred hCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCC
Confidence 9754 6777777755420 000 11123467999999766432 22233345889999999999766
Q ss_pred CcHHHHHHHHHhCCCCceEeeccccc-HHHHHHHhh--------------------------------------------
Q 012059 239 GFRDQVMQIFRAISLPQILMYSATIS-QEVEKMSSS-------------------------------------------- 273 (472)
Q Consensus 239 ~~~~~~~~i~~~~~~~~~i~~SAT~~-~~~~~~~~~-------------------------------------------- 273 (472)
+ .++......++..+.|.+|+|+- +.+.++...
T Consensus 353 n--s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 353 N--SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred c--cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 4 66777788888899999999921 111111000
Q ss_pred ---------------------hcC--CcEEEEe------------------------CCCC-----------------CC
Q 012059 274 ---------------------ISK--DIVVVSV------------------------GKPN-----------------MP 289 (472)
Q Consensus 274 ---------------------~~~--~~~~i~~------------------------~~~~-----------------~~ 289 (472)
.+. +-+++.. +... ..
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 000 0000000 0000 00
Q ss_pred c--cceeEEE---EEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHH
Q 012059 290 N--KAVKQLA---IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIM 364 (472)
Q Consensus 290 ~--~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~ 364 (472)
. ....+.. .....+.+...+..++......+.++|+|..++...+.+...|....++.+..+.|..+...|...+
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 0 0000000 1123446778888888888888889999999999999999999866799999999999999999999
Q ss_pred HHHhcCC-Cc-EEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceE--EEEEcCC
Q 012059 365 RSFLVGE-VP-VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 428 (472)
Q Consensus 365 ~~f~~g~-~~-vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 428 (472)
+.|+++. +. .|++|.+.+-|+|+..++-||+||+.|++..-.|..-||-|.|++..+ |-|++..
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 9999875 33 578889999999999999999999999999999999999999987544 4555554
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=6.5e-22 Score=200.80 Aligned_cols=135 Identities=23% Similarity=0.367 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012059 303 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 382 (472)
Q Consensus 303 ~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 382 (472)
..+...++..+......+.++||||+++..++.++..|. ..|+.+..+||++++.+|.++++.|+.|++.|||||+.++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~-~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLK-ELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-hhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 445667777777766777899999999999999999998 6799999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEec-----CCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHH
Q 012059 383 RGVELLGVRQVIIFD-----MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 439 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~-----~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 439 (472)
+|+|+|++++||++| .|.+...|+||+||+||. ..|.+++|.+..+..+...+.+.
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999988 799999999999999998 68999999998765554444443
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.91 E-value=5.2e-22 Score=210.34 Aligned_cols=346 Identities=18% Similarity=0.262 Sum_probs=213.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHh----hHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIP----SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~----~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
+++.+.+.+...||. +++.|.+.+. .+..++++++.||||+|||++|++|++..+. .+.+++|.+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----------~~~~vvi~t 299 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----------TEKPVVIST 299 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----------CCCeEEEEe
Confidence 344667777778885 8999998666 4447889999999999999999999987643 245799999
Q ss_pred CCHHHHHHHHH-HHHHHhcCCC--CeEEEEEcCcch--------------------------------------------
Q 012059 157 PTRELCIQVEE-QAKLLGKGLP--FKTALVVGGDAM-------------------------------------------- 189 (472)
Q Consensus 157 Pt~~L~~q~~~-~~~~~~~~~~--~~~~~~~~g~~~-------------------------------------------- 189 (472)
||++|..|+.. ++..+.+.++ ++++.+.|+...
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~ 379 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLK 379 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCC
Confidence 99999999754 6666655444 677777663211
Q ss_pred ---------------------------HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC---
Q 012059 190 ---------------------------ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--- 239 (472)
Q Consensus 190 ---------------------------~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~--- 239 (472)
....+.....++|+|+....|.+.+......+...+++||||||++.+..
T Consensus 380 ~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 380 GGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred CcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHH
Confidence 00001112246799999998877765444345677899999999975310
Q ss_pred ----c-----HHH----------------------------------------------------------------HHH
Q 012059 240 ----F-----RDQ----------------------------------------------------------------VMQ 246 (472)
Q Consensus 240 ----~-----~~~----------------------------------------------------------------~~~ 246 (472)
+ ... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 000 000
Q ss_pred HHHh--------------------------------C-----------------CCCceEeecccccH--HHHHHHhhhc
Q 012059 247 IFRA--------------------------------I-----------------SLPQILMYSATISQ--EVEKMSSSIS 275 (472)
Q Consensus 247 i~~~--------------------------------~-----------------~~~~~i~~SAT~~~--~~~~~~~~~~ 275 (472)
.+.. + ....+|++|||+.. ....+.+.+.
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 01256788888862 2344444333
Q ss_pred CC-cEEEEeC-CCCCCccceeEEEEE--e------cchhHHHHHHHHHHhc-CCCCCCEEEEECCchhHHHHHHHHhhh-
Q 012059 276 KD-IVVVSVG-KPNMPNKAVKQLAIW--V------ESNKKKQKLFDILMSK-QHFTPPAVVYVGSRLGADLLSNAISVT- 343 (472)
Q Consensus 276 ~~-~~~i~~~-~~~~~~~~~~~~~~~--~------~~~~~~~~l~~~l~~~-~~~~~~~lIf~~~~~~~~~l~~~L~~~- 343 (472)
-+ ....... .+....... ..+.. . ........+...+... ....+++|||++|....+.++..|...
T Consensus 620 l~~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 620 LTDVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred CCccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 22 1111111 111101111 11111 1 1112223334443332 224568999999999999999998731
Q ss_pred --cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC--cEEEEecCCC-------------------
Q 012059 344 --TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV--RQVIIFDMPN------------------- 400 (472)
Q Consensus 344 --~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~--~~VI~~~~p~------------------- 400 (472)
.++.+ +..+.. ..|..+++.|++++..||++|+.+++|||+|+. ..||+...|.
T Consensus 699 ~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 23333 333333 478899999999999999999999999999975 4677766554
Q ss_pred -----------CHhHHHHhhcccccCCCcceEEEEEcCC--ChHHHHHHHHHHH
Q 012059 401 -----------SIKEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDILK 441 (472)
Q Consensus 401 -----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~l~ 441 (472)
....+.|.+||.-|...+.-++++++.. ...+-+.+.+.+.
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 1233579999999987664455555554 3444455555554
No 114
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=207.15 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=114.2
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc-
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK- 174 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~- 174 (472)
.|..||.+.+..+-.+++++|+|||.+|||++--..+=..+.. .....+|+++|+++|++|+...+..-..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe--------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE--------SDSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh--------cCCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 6888999999999999999999999999998644444444433 4466799999999999998776655432
Q ss_pred CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc---CCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 175 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK---HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~---~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
..-.+-+.+.|.....-... .-.|.|+|+-|+.+..++.. .....+++++||+||+|.+.+.. ...+...+-.+
T Consensus 583 ~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~e-d~l~~Eqll~l 659 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEE-DGLLWEQLLLL 659 (1330)
T ss_pred CccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccc-cchHHHHHHHh
Confidence 22223333444333222111 12599999999999998887 45567899999999999998765 23333344444
Q ss_pred CCCceEeecccccH
Q 012059 252 SLPQILMYSATISQ 265 (472)
Q Consensus 252 ~~~~~i~~SAT~~~ 265 (472)
-.+.++++|||+.+
T Consensus 660 i~CP~L~LSATigN 673 (1330)
T KOG0949|consen 660 IPCPFLVLSATIGN 673 (1330)
T ss_pred cCCCeeEEecccCC
Confidence 67789999999643
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=5.7e-22 Score=199.29 Aligned_cols=318 Identities=18% Similarity=0.230 Sum_probs=215.9
Q ss_pred CCCHHHHHHHhhHhcC----CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~----~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.+++-|..++..+.+. ...++.+.||||||.+|+-.+-..+. .|..+|+++|-.+|..|+...++.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----------~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----------QGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----------cCCEEEEEeccccchHHHHHHHHH
Confidence 5678899999998755 67999999999999988776666553 478899999999999998887776
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHH---h-cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC------cH
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRI---Q-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG------FR 241 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~------~~ 241 (472)
.+ +..+..++++-+..+....+ . ....|+|+|=.. -...++++++||+||=|.-.-.. ..
T Consensus 268 rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-------lF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 268 RF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-------LFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred Hh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-------hcCchhhccEEEEeccccccccCCcCCCcCH
Confidence 54 35677777776655544333 3 458999999321 12358899999999999654221 24
Q ss_pred HHHHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCC--CCCccceeEEEEEecchh----HHHHHHHHHHh
Q 012059 242 DQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESNK----KKQKLFDILMS 315 (472)
Q Consensus 242 ~~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~ 315 (472)
.++.....+..+.++|+-|||++-+....+ ....+..+..... ......+........... -...+++.+.+
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHH
Confidence 566677777789999999999884333332 2222332222222 111222221111111111 12566677766
Q ss_pred cCCCCCCEEEEECCchhHHHHH----------------------------------------------------------
Q 012059 316 KQHFTPPAVVYVGSRLGADLLS---------------------------------------------------------- 337 (472)
Q Consensus 316 ~~~~~~~~lIf~~~~~~~~~l~---------------------------------------------------------- 337 (472)
....+.++|+|+|.+..+-.+.
T Consensus 416 ~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gter 495 (730)
T COG1198 416 TLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTER 495 (730)
T ss_pred HHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHH
Confidence 6677778888888776553332
Q ss_pred --HHHhhh-cCCeEEEEcCCCCHH--HHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCC------------
Q 012059 338 --NAISVT-TGMKALSIHGEKPMK--ERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN------------ 400 (472)
Q Consensus 338 --~~L~~~-~~~~~~~~~~~~~~~--~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~------------ 400 (472)
+.|.+. .+.++..+.++.... .-+..++.|.+|+.+|||.|++++.|.|+|++..|...|...
T Consensus 496 ieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er 575 (730)
T COG1198 496 IEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASER 575 (730)
T ss_pred HHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHH
Confidence 111111 134455666665543 356789999999999999999999999999999987765433
Q ss_pred CHhHHHHhhcccccCCCcceEEEEEcCCChHHHHH
Q 012059 401 SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQE 435 (472)
Q Consensus 401 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 435 (472)
....+.|-.|||||.+.+|.+++-....|...+..
T Consensus 576 ~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~ 610 (730)
T COG1198 576 TFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610 (730)
T ss_pred HHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHH
Confidence 23456888999999999999999998887554443
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=1.5e-22 Score=199.62 Aligned_cols=296 Identities=15% Similarity=0.164 Sum_probs=193.4
Q ss_pred CCCHHHHHHHhhHh----cC-CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~-~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.++.+|..||..+. +| +.+++++.||+|||.+ .+.++.+|+.. +-.+++|+|+-+++|+.|.+..+.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~-------~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKS-------GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhc-------chhheeeEEechHHHHHHHHHHHH
Confidence 68999999998865 44 4599999999999997 45666666652 446789999999999999999888
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC-----CCCCCCeeEEEEeccchhhhcCcHHHHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQRGFRDQVM 245 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~-----~~~~~~~~~iVvDE~h~~~~~~~~~~~~ 245 (472)
.+..... ....+.+.... ..++|.++|++.+...+... .+....+++||+||||+-. .....
T Consensus 237 ~~~P~~~-~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~ 303 (875)
T COG4096 237 DFLPFGT-KMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWS 303 (875)
T ss_pred HhCCCcc-ceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhH
Confidence 8865422 11122111111 14789999999998877654 3445669999999999754 44555
Q ss_pred HHHHhCCCCceEeecccccHHHHHHHhhhc-CCcEEE------------------Ee--CCC--CCCcc-----------
Q 012059 246 QIFRAISLPQILMYSATISQEVEKMSSSIS-KDIVVV------------------SV--GKP--NMPNK----------- 291 (472)
Q Consensus 246 ~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~i------------------~~--~~~--~~~~~----------- 291 (472)
.++.++...++++ |||+.+.+..-.-.++ ..|+.. .+ ... ...+.
T Consensus 304 ~I~dYFdA~~~gL-TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 304 SILDYFDAATQGL-TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHHHHhh-ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 7777775554444 9998664433222222 222211 11 000 00000
Q ss_pred ce---eEEE---------EEecchhH-HHHHHHHHHh--cCCCCCCEEEEECCchhHHHHHHHHhhhc----CCeEEEEc
Q 012059 292 AV---KQLA---------IWVESNKK-KQKLFDILMS--KQHFTPPAVVYVGSRLGADLLSNAISVTT----GMKALSIH 352 (472)
Q Consensus 292 ~~---~~~~---------~~~~~~~~-~~~l~~~l~~--~~~~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~ 352 (472)
.+ .+.+ .+...... ...+.+.+.. ....-+|+||||.+..+|+.+...|.... +--+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 0000 00001111 1222333333 22225699999999999999999997422 34466677
Q ss_pred CCCCHHHHHHHHHHHhc--CCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccC
Q 012059 353 GEKPMKERREIMRSFLV--GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 415 (472)
Q Consensus 353 ~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~ 415 (472)
|+-.+ . ...++.|.. .-.+|.|+.+++..|+|+|.|.+++++..-.|...|.||+||+-|.
T Consensus 463 ~d~~~-~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQ-A-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchh-h-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 76553 2 334555543 3466889999999999999999999999999999999999999885
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=2.1e-21 Score=199.47 Aligned_cols=300 Identities=14% Similarity=0.139 Sum_probs=181.5
Q ss_pred CCCHHHHHHHhhHh----c------CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----S------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~------~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
-++.+|..|+..+. . .+..+++++||||||++++..+...+ . ....+++|||+|+.+|..|+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~-------~~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E-------LLKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h-------hcCCCeEEEEECcHHHHHHH
Confidence 37889999998864 2 25799999999999997655544332 2 13568899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhc-CCCEEEeChHHHHHHHHcC--CCCCCCe-eEEEEeccchhhhcCcH
Q 012059 166 EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKH--DIELDDI-RMFVLDEVDCMLQRGFR 241 (472)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~--~~~~~~~-~~iVvDE~h~~~~~~~~ 241 (472)
.+.+..+..... .+..+.......+.. ...|+|+|.++|...+... ....... -+||+||||+....
T Consensus 310 ~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~--- 380 (667)
T TIGR00348 310 MKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG--- 380 (667)
T ss_pred HHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---
Confidence 999998863211 111122222222322 3689999999998644321 1111112 28999999987533
Q ss_pred HHHHHHH-HhCCCCceEeecccccHHHHH-HHhhh---cCCcEEEEeCCCCCCccce-eE-EEE------Eecc------
Q 012059 242 DQVMQIF-RAISLPQILMYSATISQEVEK-MSSSI---SKDIVVVSVGKPNMPNKAV-KQ-LAI------WVES------ 302 (472)
Q Consensus 242 ~~~~~i~-~~~~~~~~i~~SAT~~~~~~~-~~~~~---~~~~~~i~~~~~~~~~~~~-~~-~~~------~~~~------ 302 (472)
.+...+ ..+++...++||||+-..... ....+ ..+++....- ..+..... .. .+. ....
T Consensus 381 -~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~-~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 381 -ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFI-TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred -HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeH-HHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 233333 567889999999998532111 11111 1122211100 00000000 00 000 0000
Q ss_pred ---------------------------------hhHHHHHH----HHHHhc-CCCCCCEEEEECCchhHHHHHHHHhhhc
Q 012059 303 ---------------------------------NKKKQKLF----DILMSK-QHFTPPAVVYVGSRLGADLLSNAISVTT 344 (472)
Q Consensus 303 ---------------------------------~~~~~~l~----~~l~~~-~~~~~~~lIf~~~~~~~~~l~~~L~~~~ 344 (472)
......+. +..... ....++.+|||.++.+|..+++.|.+..
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~ 538 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEEL 538 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhc
Confidence 00001111 111111 1224789999999999999998886332
Q ss_pred ----CCeEEEEcCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEeccccccCCCCCCcEEEEecC
Q 012059 345 ----GMKALSIHGEKPMK---------------------ERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIFDM 398 (472)
Q Consensus 345 ----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~~~ 398 (472)
+.....++++.+.. ....+++.|++ +.++|||+++++.+|+|.|.+.+++..-+
T Consensus 539 ~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKp 618 (667)
T TIGR00348 539 NEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKP 618 (667)
T ss_pred ccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecc
Confidence 23455566543322 22468889976 68999999999999999999988886665
Q ss_pred CCCHhHHHHhhcccccC
Q 012059 399 PNSIKEYVHQIGRASQM 415 (472)
Q Consensus 399 p~s~~~~~Qr~GR~~R~ 415 (472)
-. ...++|++||+.|.
T Consensus 619 lk-~h~LlQai~R~nR~ 634 (667)
T TIGR00348 619 LK-YHGLLQAIARTNRI 634 (667)
T ss_pred cc-ccHHHHHHHHhccc
Confidence 55 45689999999994
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=9.6e-22 Score=194.32 Aligned_cols=318 Identities=19% Similarity=0.262 Sum_probs=225.2
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|+ .|+++|.-+.-.++.| -+..+.||+|||+++.+|++...+. |..+.|++|+.-||.|-++++..
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~----------G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ----------GRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc----------CCCeEEEcCCHHHHHHHHHHHHH
Confidence 455 7899999999888877 4789999999999999999877654 67799999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhhc------
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQR------ 238 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~------~~~~~~~~~iVvDE~h~~~~~------ 238 (472)
+...+++++.++.++....+... .-.|||+++|...| .+++..+ ......+.+.||||+|.++-.
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPL 219 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRA--AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 219 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHH--HHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCce
Confidence 99999999999888766544222 23589999998776 2333221 112356889999999986510
Q ss_pred ---------CcHHHHHHHHHhCC---------C-----------------------------------------------
Q 012059 239 ---------GFRDQVMQIFRAIS---------L----------------------------------------------- 253 (472)
Q Consensus 239 ---------~~~~~~~~i~~~~~---------~----------------------------------------------- 253 (472)
.....+..+...+. .
T Consensus 220 iISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~ 299 (764)
T PRK12326 220 VLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQ 299 (764)
T ss_pred eeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 01111111111110 0
Q ss_pred ---------------------------------------------------------------CceEeecccccHHHHHH
Q 012059 254 ---------------------------------------------------------------PQILMYSATISQEVEKM 270 (472)
Q Consensus 254 ---------------------------------------------------------------~~~i~~SAT~~~~~~~~ 270 (472)
.++.+||+|......++
T Consensus 300 ~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef 379 (764)
T PRK12326 300 RDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL 379 (764)
T ss_pred cCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH
Confidence 03445555555444444
Q ss_pred HhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEE
Q 012059 271 SSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALS 350 (472)
Q Consensus 271 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~ 350 (472)
.+.+..+.+.+....+..... .....+.....+...+.+.+.+....+.|+||.+.|....+.++..|. ..+++...
T Consensus 380 ~~iY~l~Vv~IPtnkp~~R~d--~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~-~~gI~h~v 456 (764)
T PRK12326 380 RQFYDLGVSVIPPNKPNIRED--EADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLR-AAGVPAVV 456 (764)
T ss_pred HHHhCCcEEECCCCCCceeec--CCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH-hCCCccee
Confidence 444444433222211111110 111334555677788888888877788999999999999999999998 77889888
Q ss_pred EcCCCCHHHHHHHHHHHhcCC-CcEEEEeccccccCCCCC---------------CcEEEEecCCCCHhHHHHhhccccc
Q 012059 351 IHGEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELLG---------------VRQVIIFDMPNSIKEYVHQIGRASQ 414 (472)
Q Consensus 351 ~~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~---------------~~~VI~~~~p~s~~~~~Qr~GR~~R 414 (472)
+++.-...+- +++. ++|+ -.|.|||++++||.||.- ==+||-...+.|...-.|-.||+||
T Consensus 457 LNAk~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGR 533 (764)
T PRK12326 457 LNAKNDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGR 533 (764)
T ss_pred eccCchHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccccc
Confidence 8887553332 2222 2453 448999999999999862 1378888899999999999999999
Q ss_pred CCCcceEEEEEcCCCh
Q 012059 415 MGDEGTAIVFVNEENK 430 (472)
Q Consensus 415 ~g~~g~~~~~~~~~~~ 430 (472)
.|.+|.+..|++-+|.
T Consensus 534 QGDpGss~f~lSleDd 549 (764)
T PRK12326 534 QGDPGSSVFFVSLEDD 549 (764)
T ss_pred CCCCCceeEEEEcchh
Confidence 9999999999998774
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.90 E-value=8.6e-22 Score=184.47 Aligned_cols=170 Identities=22% Similarity=0.294 Sum_probs=134.9
Q ss_pred CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh
Q 012059 253 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 253 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~ 332 (472)
..|+|.+|||+.+.-.+... ...+.-.+.......+ .+..-+.....+.|+..+......+.++||-+-+++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 46999999999864433322 1111111111122111 2223445567788888888877788999999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC-----CCCHhHHHH
Q 012059 333 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 407 (472)
Q Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~-----p~s~~~~~Q 407 (472)
++.|.++|. ..|+++.++|++...-+|.+++...+.|.++|||.-+.+-+|+|+|.|..|.++|. ..|....+|
T Consensus 459 AEdLT~Yl~-e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 459 AEDLTEYLK-ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHH-hcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999998 89999999999999999999999999999999999999999999999999999885 458899999
Q ss_pred hhcccccCCCcceEEEEEcCCChH
Q 012059 408 QIGRASQMGDEGTAIVFVNEENKN 431 (472)
Q Consensus 408 r~GR~~R~g~~g~~~~~~~~~~~~ 431 (472)
-+|||.|. ..|.++++.+.-...
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~s 560 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDS 560 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHH
Confidence 99999996 579999999865433
No 120
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.89 E-value=6.6e-22 Score=192.59 Aligned_cols=320 Identities=15% Similarity=0.188 Sum_probs=223.2
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.+-+||.-.++++. .+-+.|+...+|.|||.. .++.+..|... +..+..|||||...|-+ |.+++.+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~-------g~~gpHLVVvPsSTleN-WlrEf~k 469 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI-------GNPGPHLVVVPSSTLEN-WLREFAK 469 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc-------CCCCCcEEEecchhHHH-HHHHHHH
Confidence 47889999999875 666889999999999974 55666665542 33455899999999865 8888999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhc----CCCEEEeChHHHHHHHH-cCCCCCCCeeEEEEeccchhhhcCcHHHHHH
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQ----GVELIVGTPGRLIDLLM-KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 246 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~I~i~Tp~~l~~~~~-~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~ 246 (472)
|+.. +++..++|......+++.... +++|+++||..+..--. +..+.-.+++++|+||+|.+-++. ..-..
T Consensus 470 wCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~--SeRy~ 545 (941)
T KOG0389|consen 470 WCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT--SERYK 545 (941)
T ss_pred hCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc--hHHHH
Confidence 9865 788888888776666654432 48999999966532111 111234568899999999987664 22233
Q ss_pred HHHhCCCCceEeeccccc-HHHHHH---------------------------------------------Hhh-------
Q 012059 247 IFRAISLPQILMYSATIS-QEVEKM---------------------------------------------SSS------- 273 (472)
Q Consensus 247 i~~~~~~~~~i~~SAT~~-~~~~~~---------------------------------------------~~~------- 273 (472)
-+-.++....+++|+|+- +.+.++ ++.
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 344447778899999921 000000 000
Q ss_pred ----------hcCCcEEEEeC------------------------CCC--CCc------------c--------------
Q 012059 274 ----------ISKDIVVVSVG------------------------KPN--MPN------------K-------------- 291 (472)
Q Consensus 274 ----------~~~~~~~i~~~------------------------~~~--~~~------------~-------------- 291 (472)
+.+....|... ..+ ... .
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 00000000000 000 000 0
Q ss_pred -------------------------------------ceeEE------EEEecchhHHHHHHHHHHhcCCCCCCEEEEEC
Q 012059 292 -------------------------------------AVKQL------AIWVESNKKKQKLFDILMSKQHFTPPAVVYVG 328 (472)
Q Consensus 292 -------------------------------------~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~ 328 (472)
...+. ....-.+.|...|-.+|......+.+||||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 00000 00011234666777777777777889999999
Q ss_pred CchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEeccccccCCCCCCcEEEEecCCCCHhHHH
Q 012059 329 SRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE--VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYV 406 (472)
Q Consensus 329 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~ 406 (472)
.....+.|...|. ..++....+.|...-.+|+.+++.|..++ .-.|++|.+.+-|||+..+++||.+|...++-+-.
T Consensus 786 FTqmLDILE~~L~-~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 786 FTQMLDILEVVLD-TLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHH-hcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999999998 89999999999999999999999999764 33579999999999999999999999999999999
Q ss_pred HhhcccccCCCc--ceEEEEEcCCC
Q 012059 407 HQIGRASQMGDE--GTAIVFVNEEN 429 (472)
Q Consensus 407 Qr~GR~~R~g~~--g~~~~~~~~~~ 429 (472)
|+--||+|.|+. =.++.+++...
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999986 45666777664
No 121
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.9e-21 Score=186.32 Aligned_cols=308 Identities=19% Similarity=0.205 Sum_probs=206.2
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH-HHhcCC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGL 176 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~ 176 (472)
..++.+.+..+..++-++|.+.||||||+ .+|-+ |...+. ..++.+-+-.|.|.-|..+++... +++..+
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~Qy--L~edGY-----~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQY--LYEDGY-----ADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHH--HHhccc-----ccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 44566666666688889999999999998 44433 222111 234456666799988887666544 343333
Q ss_pred CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC--cHHHHHHHHHhCCCC
Q 012059 177 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLP 254 (472)
Q Consensus 177 ~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~--~~~~~~~i~~~~~~~ 254 (472)
|-.+ |.....+.. ......|-++|.+.|++-..... .+..++.||+||||.-.-.. ....+..++....+.
T Consensus 429 G~~V----GYsIRFEdv--T~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 429 GDTV----GYSIRFEDV--TSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred cccc----ceEEEeeec--CCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 3222 211111110 11235688999999988765544 57889999999999743111 234445555556788
Q ss_pred ceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHh--cCCCCCCEEEEECCchh
Q 012059 255 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS--KQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 255 ~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~lIf~~~~~~ 332 (472)
++|.+|||+. .+.+...|..-|.....+... + +...+...+-.+..+..+.-... .....+-+|||...++.
T Consensus 502 KliVtSATm~--a~kf~nfFgn~p~f~IpGRTy-P---V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqed 575 (1042)
T KOG0924|consen 502 KLIVTSATMD--AQKFSNFFGNCPQFTIPGRTY-P---VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQED 575 (1042)
T ss_pred eEEEeecccc--HHHHHHHhCCCceeeecCCcc-c---eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcc
Confidence 9999999997 455666565445444333322 1 33333333333333333332222 12334679999999887
Q ss_pred HHHHHHHHhhh---------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEec------
Q 012059 333 ADLLSNAISVT---------TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD------ 397 (472)
Q Consensus 333 ~~~l~~~L~~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~------ 397 (472)
.+-.+..+... .++.+..+++.++..-+.++++.-..|..+++|||++++..+.+|++.+||+.+
T Consensus 576 iE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 576 IECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred hhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 66665555421 257789999999999999998888889999999999999999999999999844
Q ss_pred ------------CCCCHhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 398 ------------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 398 ------------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
.|.|-+.--||.|||||.| +|.||-+|+++
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 3557788899999999996 89999999874
No 122
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.9e-21 Score=189.24 Aligned_cols=306 Identities=17% Similarity=0.196 Sum_probs=192.3
Q ss_pred HHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH-HHHHhcCCCCeEE
Q 012059 103 QAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ-AKLLGKGLPFKTA 181 (472)
Q Consensus 103 ~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~-~~~~~~~~~~~~~ 181 (472)
+++..+..+.-+||||.||||||+ .+|-+- .+.+....+...+..+-|--|.|--|..+++. ..+++. ++-.+.
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFL--YEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVs 337 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFL--YEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVS 337 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHH--HHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Ccccee
Confidence 344445566679999999999998 666553 33333322223355677888999666554443 334443 333333
Q ss_pred E--EEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--------
Q 012059 182 L--VVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-------- 251 (472)
Q Consensus 182 ~--~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-------- 251 (472)
. -+.|... ....|.++|.|.|++-+.+.. .+..++.||+||||.-.-. ...+.-++.++
T Consensus 338 YqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvn--TDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 338 YQIRFDGTIG--------EDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVN--TDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEEeccccC--------CCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccch--HHHHHHHHHHHHHHHHHHh
Confidence 2 2333222 347899999999999887654 5889999999999973211 22222222221
Q ss_pred ------CCCceEeecccccHH-HHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHH-HHHh-cCCCCCC
Q 012059 252 ------SLPQILMYSATISQE-VEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD-ILMS-KQHFTPP 322 (472)
Q Consensus 252 ------~~~~~i~~SAT~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~-~~~~~~~ 322 (472)
...+.|.||||+.-. +.+-.+.|-..+-.+.+.....+ +..++......+.....+. .+.- ..-..+.
T Consensus 407 ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ 483 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGG 483 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcCCCCc
Confidence 367899999998621 11111222223334444433332 2222222222222211111 1111 2234567
Q ss_pred EEEEECCchhHHHHHHHHhhhc----------------------------------------------------------
Q 012059 323 AVVYVGSRLGADLLSNAISVTT---------------------------------------------------------- 344 (472)
Q Consensus 323 ~lIf~~~~~~~~~l~~~L~~~~---------------------------------------------------------- 344 (472)
+|||+..+.+++.++..|++..
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 9999999999999999998211
Q ss_pred ----------------------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 012059 345 ----------------------------------------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 384 (472)
Q Consensus 345 ----------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 384 (472)
.+-+..+++=++.+++.++++.-..|..-++|||++++..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 1123355666777888888888888988899999999999
Q ss_pred CCCCCCcEEEEecCCC------------------CHhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 385 VELLGVRQVIIFDMPN------------------SIKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 385 idi~~~~~VI~~~~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
+.||++++||+.+.-+ |-+.--||.|||||.| .|+||-+|+..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999855322 4455689999999997 79999999865
No 123
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=2.6e-20 Score=190.74 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012059 304 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 383 (472)
Q Consensus 304 ~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 383 (472)
.+...++..+......+.++||||+++..++.++..|. ..|+.+..+||++++.+|..+++.|+.|++.|+|||+.+++
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~-~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLK-ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHh-hcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 45667777777666677889999999999999999998 77999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecC-----CCCHhHHHHhhcccccCCCcceEEEEEcC---------CChHHHHHHHHHHHHcCCCCCH
Q 012059 384 GVELLGVRQVIIFDM-----PNSIKEYVHQIGRASQMGDEGTAIVFVNE---------ENKNLFQELVDILKSSGAGIPR 449 (472)
Q Consensus 384 Gidi~~~~~VI~~~~-----p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~~ 449 (472)
|+|+|++++||++|. |.+...|+||+||+||. ..|.|++|++. .+....+++...++.....+|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999999874 78999999999999996 68999999994 4566777788888888888888
Q ss_pred HHHhc
Q 012059 450 ELINS 454 (472)
Q Consensus 450 ~l~~~ 454 (472)
...+-
T Consensus 588 ~~~~~ 592 (652)
T PRK05298 588 TIKKK 592 (652)
T ss_pred hHHHH
Confidence 77544
No 124
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.89 E-value=2.6e-21 Score=196.57 Aligned_cols=314 Identities=17% Similarity=0.187 Sum_probs=212.6
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH-HhcCC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL-LGKGL 176 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~ 176 (472)
+..+.+.+..+.+++.+++.+.||+|||+-.---+++..... +...++++-.|+|--|..+++.+.. .+...
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-------~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES-------GAACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc-------CCCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 567888888898999999999999999985444445544331 2455677878999777776665543 33344
Q ss_pred CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-C-cHHHHHHHHHhCCCC
Q 012059 177 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-G-FRDQVMQIFRAISLP 254 (472)
Q Consensus 177 ~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~-~-~~~~~~~i~~~~~~~ 254 (472)
+-.+.......+.. .....+++||.|.|++.+..+ ..+..+++||+||+|.-.-. . +--.+..++...+..
T Consensus 248 g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeeccc------CCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 43333333322211 133789999999999999874 46889999999999974322 2 234444555555899
Q ss_pred ceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCC---------------ccceeEE------------EEEecchhH--
Q 012059 255 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP---------------NKAVKQL------------AIWVESNKK-- 305 (472)
Q Consensus 255 ~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~------------~~~~~~~~~-- 305 (472)
++|+||||+.. +.+...|...++....+..... .....+. .........
T Consensus 321 kvILMSAT~da--e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 321 KVILMSATLDA--ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred eEEEeeeecch--HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 99999999883 3343444433332222111000 0000000 000011112
Q ss_pred -HHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012059 306 -KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT------TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 378 (472)
Q Consensus 306 -~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 378 (472)
...++..+... ...+.+|||.+....+..+.+.|... ..+-+..+|+.|+..++..+......|..+|+++|
T Consensus 399 Li~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 399 LIEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 22333333222 44678999999999999999988621 13567889999999999999999889999999999
Q ss_pred ccccccCCCCCCcEEEEec--------CCC----------CHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 379 GILGRGVELLGVRQVIIFD--------MPN----------SIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 379 ~~~~~Gidi~~~~~VI~~~--------~p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
++++.+|.|+++-+||+.+ .-. |-..-.||.|||||. ++|.||-+++...
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999999843 322 556779999999998 6899999998664
No 125
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=8.3e-21 Score=189.75 Aligned_cols=321 Identities=15% Similarity=0.155 Sum_probs=206.0
Q ss_pred CCCHHHHHHHhhHh---cC-------CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL---SG-------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~---~~-------~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
.++|+|.+++..+. .| ..+|+.-.+|+|||+. +++.+..++.+.... ...-.+.|||+|. .|+..|
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~--~~~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQA--KPLINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCc--cccccccEEEccH-HHHHHH
Confidence 67999999998865 22 2488899999999996 455555555432110 0122679999994 677779
Q ss_pred HHHHHHHhcCCCCeEEEEEcCcch--HHHHHHH-----hcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 012059 166 EEQAKLLGKGLPFKTALVVGGDAM--ARQVYRI-----QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~-----~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
++++.++.....+....++++... ......+ .-..-|++.+++.+.+.... +....++++|+||.|++-+.
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch
Confidence 999999976545667777776663 1111111 11245888999998765543 34567899999999998443
Q ss_pred CcHHHHHHHHHhCCCCceEeeccccc-HH---------------------------------------------------
Q 012059 239 GFRDQVMQIFRAISLPQILMYSATIS-QE--------------------------------------------------- 266 (472)
Q Consensus 239 ~~~~~~~~i~~~~~~~~~i~~SAT~~-~~--------------------------------------------------- 266 (472)
...+...+..+..++.|++|+|+- ++
T Consensus 392 --~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 --DSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 577778888889999999999931 00
Q ss_pred HHHHHhhh------------cCC-cEEEEeCCCC----------------------------------------------
Q 012059 267 VEKMSSSI------------SKD-IVVVSVGKPN---------------------------------------------- 287 (472)
Q Consensus 267 ~~~~~~~~------------~~~-~~~i~~~~~~---------------------------------------------- 287 (472)
+..+...+ ++. ...+-.....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11111110 000 0000000000
Q ss_pred CC------------ccceeEEEEEecchhHHHHHHHHHHhcCC-CCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCC
Q 012059 288 MP------------NKAVKQLAIWVESNKKKQKLFDILMSKQH-FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGE 354 (472)
Q Consensus 288 ~~------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 354 (472)
.. ...............+...|..++..... ...++++..+.+.+.+.+...++ ..|+.+..+||.
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~-~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR-WRGYEVLRLDGK 628 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh-hcCceEEEEcCC
Confidence 00 00000000000112233444444422221 12234444455556666666555 669999999999
Q ss_pred CCHHHHHHHHHHHhcCC--Cc-EEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEE
Q 012059 355 KPMKERREIMRSFLVGE--VP-VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 425 (472)
Q Consensus 355 ~~~~~r~~~~~~f~~g~--~~-vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 425 (472)
|+.++|+.+++.|++.. .. .|.+|.+.+.||++-+++-||.||.+|+++.-.|+++|+-|.|++-.|+++-
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 99999999999999643 23 4567779999999999999999999999999999999999999987766654
No 126
>COG4889 Predicted helicase [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=198.47 Aligned_cols=426 Identities=16% Similarity=0.232 Sum_probs=252.6
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccCccccCCCcccccCC--------------------CHHHHHHHHHh-cCce
Q 012059 5 WPLWVANANRGMRVVPPPPPERLPATDECFYVRESDENSGFQSL--------------------TIGQTDSLRKR-LEIN 63 (472)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~-~~~~ 63 (472)
||-..+.-.+|++.|.-.....+.+.+..||...-. ...+.+. +..-.+.+... ....
T Consensus 50 wpe~~g~~dtgidlva~~d~g~ytaiQcKFy~nsla-k~di~sF~t~lgkt~f~~gliiSTtdw~sNA~~aieq~~~~~~ 128 (1518)
T COG4889 50 WPERGGRTDTGIDLVAREDNGNYTAIQCKFYQNSLA-KGDIDSFFTALGKTGFKNGLIISTTDWTSNAEKAIEQQRSPGM 128 (1518)
T ss_pred chhhCCCcCcceeEEEEccCCCeEEEEeeeeccccc-cccccHHHHHhccccccCceEEEecccchhHHHHHHhhhCccc
Confidence 788888888999999887778999999999983322 1112221 11111111110 0011
Q ss_pred eeC-CCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC----CcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 64 VKG-DAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG----KSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 64 ~~~-~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~----~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
..| ..+......|+.+.. .++..++....-.+|+|+|..|+...++| ...-+.+.+|+|||++.+ -+.+.+.
T Consensus 129 ~Iglsei~es~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala- 205 (1518)
T COG4889 129 RIGLSEIAESPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA- 205 (1518)
T ss_pred eecHHHHhcCCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh-
Confidence 111 122223345555433 44555565555669999999999998844 335556679999999754 4444442
Q ss_pred hhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH-----------------------HHHH
Q 012059 139 IRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR-----------------------QVYR 195 (472)
Q Consensus 139 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~-----------------------~~~~ 195 (472)
..++|+++|+.+|..|..+++..- +.++++...++++..... .+..
T Consensus 206 ----------~~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~ 274 (1518)
T COG4889 206 ----------AARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEH 274 (1518)
T ss_pred ----------hhheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHH
Confidence 266999999999999987777664 345666666666432211 1111
Q ss_pred --HhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC------CCCceEeeccccc---
Q 012059 196 --IQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI------SLPQILMYSATIS--- 264 (472)
Q Consensus 196 --~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~------~~~~~i~~SAT~~--- 264 (472)
...+.-|+++|++.+...-+....-+..+++||+||||+...-.....-..-+.++ +..+.+.||||+.
T Consensus 275 ~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~ 354 (1518)
T COG4889 275 RQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYS 354 (1518)
T ss_pred hhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhc
Confidence 11245599999999988877777778899999999999865322111111112111 3456677888852
Q ss_pred HHHHH------------------------------HHhhhcCCcEEEEeCCCCCCc-cceeEEEEEe------cchhHHH
Q 012059 265 QEVEK------------------------------MSSSISKDIVVVSVGKPNMPN-KAVKQLAIWV------ESNKKKQ 307 (472)
Q Consensus 265 ~~~~~------------------------------~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~------~~~~~~~ 307 (472)
+.... ..+.++.++.++......... ........-. ....+..
T Consensus 355 eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIv 434 (1518)
T COG4889 355 ESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIV 434 (1518)
T ss_pred hhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhh
Confidence 11111 122333443322221111000 0000000000 0111111
Q ss_pred HHHHHHHhcCC-------------CCCCEEEEECCchhHHHHHHHHh-----------hh-cC--CeEEEEcCCCCHHHH
Q 012059 308 KLFDILMSKQH-------------FTPPAVVYVGSRLGADLLSNAIS-----------VT-TG--MKALSIHGEKPMKER 360 (472)
Q Consensus 308 ~l~~~l~~~~~-------------~~~~~lIf~~~~~~~~~l~~~L~-----------~~-~~--~~~~~~~~~~~~~~r 360 (472)
....-|..... .-.+.+-||.+.++...++..+. +. .+ +.+..+.|.|+..+|
T Consensus 435 G~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R 514 (1518)
T COG4889 435 GCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALER 514 (1518)
T ss_pred hhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHH
Confidence 22222222111 01257889998887777765553 11 23 345567789999888
Q ss_pred HHHHH---HHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCC-cceEEEEEc----------
Q 012059 361 REIMR---SFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD-EGTAIVFVN---------- 426 (472)
Q Consensus 361 ~~~~~---~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~---------- 426 (472)
...+. .|...+++||--..++++|+|+|.++.||++++-.++.+.+|.+||+.|... +...|++++
T Consensus 515 ~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~ 594 (1518)
T COG4889 515 LDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPL 594 (1518)
T ss_pred HHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCch
Confidence 55544 3456789999888999999999999999999999999999999999999642 223333332
Q ss_pred -----CCChHHHHHHHHHHHHcCC
Q 012059 427 -----EENKNLFQELVDILKSSGA 445 (472)
Q Consensus 427 -----~~~~~~~~~l~~~l~~~~~ 445 (472)
..+.+.+.++++.|+.+..
T Consensus 595 ~~l~~n~nFk~VWqVlnALRShD~ 618 (1518)
T COG4889 595 DELVNNTNFKNVWQVLKALRSHDE 618 (1518)
T ss_pred HHHhcCccHHHHHHHHHHHHhcCH
Confidence 3346677888888877655
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=9.7e-21 Score=191.80 Aligned_cols=331 Identities=18% Similarity=0.226 Sum_probs=223.1
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|.-.--.+ ++.-|..+.||+|||+++.+|++...+. |..+.|++|+.-||.+-++++..
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~----------G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS----------GKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 454 6777777654444 3457899999999999999999876554 67799999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcCCCC-------CCCeeEEEEeccchhhhcC----
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHDIE-------LDDIRMFVLDEVDCMLQRG---- 239 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~~~~-------~~~~~~iVvDE~h~~~~~~---- 239 (472)
+...+++++.++.++....+.... -.++|+++|...| .++|..+ +. ...+.++||||+|.++=..
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~--Y~~dI~YGT~~e~gFDYLrD~-~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtP 222 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAA--YAADITYGTNNEFGFDYLRDN-MAFSLDDKFQRELNFAVIDEVDSILIDEARTP 222 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHH--hcCCEEEEcccccccchhhcc-ceechhhhcccccceeEechhhheeccccCCc
Confidence 999999999998877655443222 2389999998876 3344322 22 3678999999999865100
Q ss_pred ------------cHHHHHHHHHhC--------------------CCC---------------------------------
Q 012059 240 ------------FRDQVMQIFRAI--------------------SLP--------------------------------- 254 (472)
Q Consensus 240 ------------~~~~~~~i~~~~--------------------~~~--------------------------------- 254 (472)
....+..+...+ ...
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~ 302 (913)
T PRK13103 223 LIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAH 302 (913)
T ss_pred eeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChh
Confidence 111111111111 000
Q ss_pred --------------------------------------------------------------------------------
Q 012059 255 -------------------------------------------------------------------------------- 254 (472)
Q Consensus 255 -------------------------------------------------------------------------------- 254 (472)
T Consensus 303 ~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr 382 (913)
T PRK13103 303 NLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFR 382 (913)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHH
Confidence
Q ss_pred ---ceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCch
Q 012059 255 ---QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRL 331 (472)
Q Consensus 255 ---~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~ 331 (472)
++-+||+|......++...+..+.+.|....+.... . ..-.++.....|...+.+.+......+.|+||-+.|.+
T Consensus 383 ~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~-D-~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 383 LYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARK-D-FNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred hcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccc-c-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 233344444333333333333333332221111110 0 11124455667888888888888888999999999999
Q ss_pred hHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEeccccccCCCC----------------------
Q 012059 332 GADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPVIVATGILGRGVELL---------------------- 388 (472)
Q Consensus 332 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gidi~---------------------- 388 (472)
..+.++..|. ..+++..+++......+-+-+- ++| .-.|.|||++++||.||.
T Consensus 461 ~SE~ls~~L~-~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~ 536 (913)
T PRK13103 461 TSEHMSNLLK-KEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQ 536 (913)
T ss_pred HHHHHHHHHH-HcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHH
Confidence 9999999998 7788777777764433322222 356 345999999999999984
Q ss_pred ---------------CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHH----HHHHHHHHHHcC
Q 012059 389 ---------------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL----FQELVDILKSSG 444 (472)
Q Consensus 389 ---------------~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~----~~~l~~~l~~~~ 444 (472)
+==+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-+ -..+..++...+
T Consensus 537 ~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg~~~~~~~~~~~~ 611 (913)
T PRK13103 537 IKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFASDRVKNFMKALG 611 (913)
T ss_pred HHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhCcHHHHHHHHHcC
Confidence 11268888899999999999999999999999999999876422 124445555443
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.6e-20 Score=188.18 Aligned_cols=332 Identities=17% Similarity=0.195 Sum_probs=227.4
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|.-+--.+..| -|..+.||-|||+++.+|++-..+. |..|-|++.+.-||..-.+++..
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~----------GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT----------GKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc----------CCceEEEecchhhhhhhHHHHHH
Confidence 455 7888888777665555 5899999999999999998765544 56688889999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcCC------CCCCCeeEEEEeccchhhhc------
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQR------ 238 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~~------~~~~~~~~iVvDE~h~~~~~------ 238 (472)
+...+|+.+.++..+....+. .-.-.|||+++|...| .+++..+- .....+.+.||||+|.++-.
T Consensus 142 vy~fLGLsvG~i~~~~~~~~r--r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPL 219 (925)
T PRK12903 142 VFNFLGLSVGINKANMDPNLK--REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPL 219 (925)
T ss_pred HHHHhCCceeeeCCCCChHHH--HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcc
Confidence 999999999988876555442 2233589999998887 44444221 12456889999999986510
Q ss_pred ----------CcHHHHHHHHHhCC--------CC----------------------------------------------
Q 012059 239 ----------GFRDQVMQIFRAIS--------LP---------------------------------------------- 254 (472)
Q Consensus 239 ----------~~~~~~~~i~~~~~--------~~---------------------------------------------- 254 (472)
.....+..+...+. ..
T Consensus 220 IISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~r 299 (925)
T PRK12903 220 IISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKE 299 (925)
T ss_pred cccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhc
Confidence 01111222222110 01
Q ss_pred ---------------------------------------------------------------ceEeecccccHHHHHHH
Q 012059 255 ---------------------------------------------------------------QILMYSATISQEVEKMS 271 (472)
Q Consensus 255 ---------------------------------------------------------------~~i~~SAT~~~~~~~~~ 271 (472)
++-+||+|...+..++.
T Consensus 300 d~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~ 379 (925)
T PRK12903 300 DVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI 379 (925)
T ss_pred CCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH
Confidence 33445555444444444
Q ss_pred hhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEE
Q 012059 272 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 351 (472)
Q Consensus 272 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 351 (472)
+.+..+.+.+....+..... ..-..+.....+...+...+......+.|+||.|.|.+.++.++..|. ..|+...++
T Consensus 380 ~iY~l~Vv~IPTnkP~~R~D--~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~-~~gi~h~vL 456 (925)
T PRK12903 380 DIYNMRVNVVPTNKPVIRKD--EPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLL-EANIPHTVL 456 (925)
T ss_pred HHhCCCEEECCCCCCeeeee--CCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCCceee
Confidence 43433333332211111000 011234455677778888887777788899999999999999999998 778888888
Q ss_pred cCCCCHHHHHHHHHHHhcCC-CcEEEEeccccccCCCCCCc--------EEEEecCCCCHhHHHHhhcccccCCCcceEE
Q 012059 352 HGEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELLGVR--------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAI 422 (472)
Q Consensus 352 ~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~~~--------~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 422 (472)
++.-. +++..+-. ++|+ -.|.|||++++||.||.--. +||....|.|..--.|..||+||.|.+|.+-
T Consensus 457 NAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 457 NAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred cccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 88644 33333322 4664 55899999999999986322 8999999999999999999999999999999
Q ss_pred EEEcCCChHHH-----HHHHHHHHHcC
Q 012059 423 VFVNEENKNLF-----QELVDILKSSG 444 (472)
Q Consensus 423 ~~~~~~~~~~~-----~~l~~~l~~~~ 444 (472)
.|++-.|.-+. ..+...+...+
T Consensus 534 f~lSLeD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 534 FFISLDDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred EEEecchHHHHHhCCHHHHHHHHHhcC
Confidence 99998774322 34555565555
No 129
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=1.6e-20 Score=166.11 Aligned_cols=186 Identities=36% Similarity=0.582 Sum_probs=154.2
Q ss_pred CCCCCCCHHHHHHHhhHhcC-CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~-~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.++..|+++|.++++.+... +++++.++||+|||.++..+++..+.. ....+++|++|++.++.|+...+.
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~--------~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR--------GKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc--------cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 46778999999999999988 999999999999999988888887654 224679999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCC-CEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGV-ELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 249 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~ 249 (472)
.+............++.........+..+. +++++|++.+.+.+.........++++|+||+|.+....+...+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 887665445566666666555556666665 9999999999999988776777899999999999986567788888888
Q ss_pred hC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCC
Q 012059 250 AI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 285 (472)
Q Consensus 250 ~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 285 (472)
.+ +..+++++|||+++........+......+....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 77 7889999999999888888888887777666554
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.87 E-value=2e-19 Score=188.02 Aligned_cols=330 Identities=17% Similarity=0.255 Sum_probs=202.4
Q ss_pred CCCCCCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH-H
Q 012059 92 AGYDMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-E 166 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~-~ 166 (472)
.|| ++|+-|.+-...+. .++.+++.|+||+|||++|++|++... .+.++||++||++|++|+ .
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Ql~~ 309 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQIMA 309 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHHHHH
Confidence 456 78999999554433 678899999999999999999988642 246799999999999998 5
Q ss_pred HHHHHHhcCCCCeEEEEEcCcchH--------------------------------------------------HH----
Q 012059 167 EQAKLLGKGLPFKTALVVGGDAMA--------------------------------------------------RQ---- 192 (472)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~g~~~~--------------------------------------------------~~---- 192 (472)
+.+..+.+.+++++..+.|+...- +.
T Consensus 310 ~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~ 389 (820)
T PRK07246 310 EEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHD 389 (820)
T ss_pred HHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhcc
Confidence 778888877777777777632210 00
Q ss_pred -----------------HHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC-----c-------HHH
Q 012059 193 -----------------VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-----F-------RDQ 243 (472)
Q Consensus 193 -----------------~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-----~-------~~~ 243 (472)
.+.-...++|+|+.-..|...+.... .+...+++||||||++.+.. . ...
T Consensus 390 ~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~ 468 (820)
T PRK07246 390 GNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQT 468 (820)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHH
Confidence 00111235699999888777664443 36789999999999875311 0 000
Q ss_pred --------------------------------------------------H-----------HHHHH--h----C-----
Q 012059 244 --------------------------------------------------V-----------MQIFR--A----I----- 251 (472)
Q Consensus 244 --------------------------------------------------~-----------~~i~~--~----~----- 251 (472)
+ ..++. . +
T Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~ 548 (820)
T PRK07246 469 IQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQ 548 (820)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 0 00000 0 0
Q ss_pred -----------------------CCCceEeeccccc--HHHHHHHhhhcCC-cEEEEeCCCCCCccceeEEEEE--ec--
Q 012059 252 -----------------------SLPQILMYSATIS--QEVEKMSSSISKD-IVVVSVGKPNMPNKAVKQLAIW--VE-- 301 (472)
Q Consensus 252 -----------------------~~~~~i~~SAT~~--~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~--~~-- 301 (472)
....+|++|||++ +... +.+.+.-+ ....... .....-...+.. .+
T Consensus 549 ~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~~~~~~i~~~~p~~ 624 (820)
T PRK07246 549 SEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQDQLVVVDQDMPLV 624 (820)
T ss_pred CCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHHccEEEeCCCCCCC
Confidence 0124577788874 2222 33333221 1111111 000000111110 11
Q ss_pred ----chhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012059 302 ----SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA 377 (472)
Q Consensus 302 ----~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 377 (472)
.......+.+.+......++++||+++|....+.++..|. .....+ ...|... .+..+++.|++++..||++
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~-~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLD-QWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHh-hcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEe
Confidence 1222334444443333456799999999999999999987 334444 4444322 3566899999988899999
Q ss_pred eccccccCCCCC--CcEEEEecCCC------------------------------CHhHHHHhhcccccCCCcceEEEEE
Q 012059 378 TGILGRGVELLG--VRQVIIFDMPN------------------------------SIKEYVHQIGRASQMGDEGTAIVFV 425 (472)
Q Consensus 378 T~~~~~Gidi~~--~~~VI~~~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~ 425 (472)
|+.+.+|+|+|. ...||+...|. -...+.|.+||.-|...+--+++++
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999999973 55666655443 1234689999999987643345555
Q ss_pred cCC--ChHHHHHHHHHHHH
Q 012059 426 NEE--NKNLFQELVDILKS 442 (472)
Q Consensus 426 ~~~--~~~~~~~l~~~l~~ 442 (472)
++. .+.+-+.+.+.|..
T Consensus 781 D~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 781 DRRILTKSYGKQILASLAE 799 (820)
T ss_pred CCcccccHHHHHHHHhCCC
Confidence 544 34455566555543
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.85 E-value=4.7e-20 Score=186.88 Aligned_cols=325 Identities=15% Similarity=0.170 Sum_probs=215.7
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.+|.||.+.++++. =+-+.|++..+|.|||+.. +.+++.=...+......-.....|||||. .|+.-|..++.+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQt-icilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQT-ICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHH-HHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 56889999998864 2357999999999999864 33332211111111111122338999995 788889999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
++.. +++..++|+.......+.-.++.+|+|++|+.+.+-+..- .-.++.|+|+||.|-+-+ -...+.+..+.+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l--~~~~wNYcVLDEGHVikN--~ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL--IKIDWNYCVLDEGHVIKN--SKTKLTKAVKQL 1126 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH--HhcccceEEecCcceecc--hHHHHHHHHHHH
Confidence 9876 6777777776666555555566899999999986443221 112466999999998843 366677777777
Q ss_pred CCCceEeecccc--------------------------------------------------------------------
Q 012059 252 SLPQILMYSATI-------------------------------------------------------------------- 263 (472)
Q Consensus 252 ~~~~~i~~SAT~-------------------------------------------------------------------- 263 (472)
.....+.+|+|+
T Consensus 1127 ~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1127 RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 777888899991
Q ss_pred ---------cHHH------------HHHHhhhcCC---cEEEEeCCCCCCccc--------------eeEEE--EE----
Q 012059 264 ---------SQEV------------EKMSSSISKD---IVVVSVGKPNMPNKA--------------VKQLA--IW---- 299 (472)
Q Consensus 264 ---------~~~~------------~~~~~~~~~~---~~~i~~~~~~~~~~~--------------~~~~~--~~---- 299 (472)
|+++ .++.+.+... .+............. ...+. +.
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 1100 0011111110 000000000000000 00000 00
Q ss_pred -------------------ecchhHHHHHHHHHHhcCC--------------CCCCEEEEECCchhHHHHHHHHhhhc--
Q 012059 300 -------------------VESNKKKQKLFDILMSKQH--------------FTPPAVVYVGSRLGADLLSNAISVTT-- 344 (472)
Q Consensus 300 -------------------~~~~~~~~~l~~~l~~~~~--------------~~~~~lIf~~~~~~~~~l~~~L~~~~-- 344 (472)
...+.|...|.++|....- .++++||||.-+...+.+.+-|.+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 1112345566666655321 24689999999999999998876443
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEE-EEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcc--e
Q 012059 345 GMKALSIHGEKPMKERREIMRSFLVG-EVPVI-VATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEG--T 420 (472)
Q Consensus 345 ~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vL-vaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g--~ 420 (472)
......+.|..++.+|.++.++|+++ .++|| ++|.+.+-|+|+.++++||+++-.|++..-.|++-||+|.|++- .
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 34455899999999999999999999 78876 56779999999999999999999999999999999999999875 4
Q ss_pred EEEEEcCC
Q 012059 421 AIVFVNEE 428 (472)
Q Consensus 421 ~~~~~~~~ 428 (472)
+|-++...
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 55566554
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=5.5e-20 Score=170.67 Aligned_cols=310 Identities=15% Similarity=0.162 Sum_probs=199.9
Q ss_pred CCCCCHHHHHHHhhHhcC---CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 94 YDMPTPVQMQAIPSALSG---KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~---~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
-..++|||.+++.....+ ++.+|+.|+|+|||++-+-++. .-++++||+|.+..-++||..++.
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-------------tikK~clvLcts~VSVeQWkqQfk 366 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-------------TIKKSCLVLCTSAVSVEQWKQQFK 366 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-------------eecccEEEEecCccCHHHHHHHHH
Confidence 347899999999998833 6899999999999987544332 235679999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC--------CCCCCCeeEEEEeccchhhhcCcHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH--------DIELDDIRMFVLDEVDCMLQRGFRD 242 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~--------~~~~~~~~~iVvDE~h~~~~~~~~~ 242 (472)
.|..--+-.+...++... .....++.|+|+|+.++..--.+. .+.-..++++++||+|-+-..=|+.
T Consensus 367 ~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRR 441 (776)
T KOG1123|consen 367 QWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRR 441 (776)
T ss_pred hhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHH
Confidence 997554444444443322 223467899999997664322110 1124568999999999886444443
Q ss_pred HHHHHHHhCCCCceEeecccccHHHHHHHh-hhcCCcE----------------EEEeCCCCCC-----------cccee
Q 012059 243 QVMQIFRAISLPQILMYSATISQEVEKMSS-SISKDIV----------------VVSVGKPNMP-----------NKAVK 294 (472)
Q Consensus 243 ~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~----------------~i~~~~~~~~-----------~~~~~ 294 (472)
++.-....-.+++|||+-.+-..+.. .++-.|. .+.....+.+ ...-.
T Consensus 442 ----Vlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~k 517 (776)
T KOG1123|consen 442 ----VLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRK 517 (776)
T ss_pred ----HHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhh
Confidence 33333445568999997432221110 0000000 0000000000 00001
Q ss_pred EEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHh-cCCCc
Q 012059 295 QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL-VGEVP 373 (472)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~ 373 (472)
....++-...|.....-++.-+...+.++|||..+.-....++-.|. -..++|..++.+|..+++.|+ +..++
T Consensus 518 r~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~------KpfIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 518 RMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred hheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC------CceEECCCchhHHHHHHHhcccCCccc
Confidence 11112222333333333444444567899999988777666665443 235889999999999999998 45788
Q ss_pred EEEEeccccccCCCCCCcEEEEecCC-CCHhHHHHhhcccccCCCc------ceEEEEEcCCChH
Q 012059 374 VIVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRASQMGDE------GTAIVFVNEENKN 431 (472)
Q Consensus 374 vLvaT~~~~~Gidi~~~~~VI~~~~p-~s~~~~~Qr~GR~~R~g~~------g~~~~~~~~~~~~ 431 (472)
.++-+.+....+|+|.++++|..... .|-.+-.||+||.-|+-+. ...|.+++.+..+
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 89999999999999999999987654 3678889999999887431 3455666655443
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.83 E-value=1.1e-18 Score=176.14 Aligned_cols=277 Identities=17% Similarity=0.191 Sum_probs=184.7
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|+ .|+++|.-+.-.+ .+.-|..+.||.|||+++.+|++-..+. |..|.|++++..||.+-++++..
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~----------G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT----------GKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc----------CCceEEEeCCHHHHHHHHHHHHH
Confidence 466 5788887765444 4568999999999999999999754433 66699999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHH-HHHHcC------CCCCCCeeEEEEeccchhhhcC-----
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLI-DLLMKH------DIELDDIRMFVLDEVDCMLQRG----- 239 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~-~~~~~~------~~~~~~~~~iVvDE~h~~~~~~----- 239 (472)
+...+|+.+.++.++....+ +...-.++|+++|...|- +++..+ ......+.+.||||+|.++-..
T Consensus 140 vy~~LGLsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPL 217 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEE--RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPL 217 (870)
T ss_pred HHHHcCCceeeeCCCCChHH--HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCce
Confidence 99999999999888766654 223345899999987652 333322 1124568899999999865100
Q ss_pred -----------cHHHHHHHHHhCC--------------------------------------------------------
Q 012059 240 -----------FRDQVMQIFRAIS-------------------------------------------------------- 252 (472)
Q Consensus 240 -----------~~~~~~~i~~~~~-------------------------------------------------------- 252 (472)
.......+.+.+.
T Consensus 218 iISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~ 297 (870)
T CHL00122 218 IISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFK 297 (870)
T ss_pred eccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhc
Confidence 0111111111110
Q ss_pred -------------------------------------------------------------CCceEeecccccHHHHHHH
Q 012059 253 -------------------------------------------------------------LPQILMYSATISQEVEKMS 271 (472)
Q Consensus 253 -------------------------------------------------------------~~~~i~~SAT~~~~~~~~~ 271 (472)
-.++.+||+|......++.
T Consensus 298 d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~ 377 (870)
T CHL00122 298 NVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFE 377 (870)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHH
Confidence 0145566666655555555
Q ss_pred hhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEE
Q 012059 272 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 351 (472)
Q Consensus 272 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 351 (472)
+.+..+.+.+....+..... ....++.....|...+...+......+.|+||-+.|....+.++..|. ..|++..++
T Consensus 378 ~iY~l~vv~IPtnkp~~R~d--~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~-~~gi~h~vL 454 (870)
T CHL00122 378 KIYNLEVVCIPTHRPMLRKD--LPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLK-EYRLPHQLL 454 (870)
T ss_pred HHhCCCEEECCCCCCcccee--CCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHH-HcCCcccee
Confidence 55544444433222211111 111234455567777888877777788999999999999999999998 788988888
Q ss_pred cCCCCHHHHH-HHHHHHhcCC-CcEEEEeccccccCCCC
Q 012059 352 HGEKPMKERR-EIMRSFLVGE-VPVIVATGILGRGVELL 388 (472)
Q Consensus 352 ~~~~~~~~r~-~~~~~f~~g~-~~vLvaT~~~~~Gidi~ 388 (472)
++.....+++ +++.. +|+ -.|.|||++++||.||.
T Consensus 455 NAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 455 NAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred eCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 8864221222 23322 564 44899999999999973
No 134
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.7e-18 Score=159.11 Aligned_cols=329 Identities=17% Similarity=0.152 Sum_probs=203.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
+..|...+.++...+-+++.-----+..+.+-+..+..++-+++.+.||||||. .+|-+..-... .....+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~-------~~~~~v 94 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYEL-------SHLTGV 94 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHH-------hhccce
Confidence 566888888888887776542222344455555666688889999999999997 55554322211 112336
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
....|.|.-|.+++..... ..++....-+|.....+.+. ..+.-+-+||.+.|++-..... .+..+++||+|||
T Consensus 95 ~CTQprrvaamsva~RVad---EMDv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDea 168 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVAD---EMDVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEA 168 (699)
T ss_pred eecCchHHHHHHHHHHHHH---HhccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhCc-ccccccEEEechh
Confidence 6667988887775554332 22222222222211111100 0001133577777776665555 3788999999999
Q ss_pred chhh--hcCcHHHHHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHH
Q 012059 233 DCML--QRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 310 (472)
Q Consensus 233 h~~~--~~~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (472)
|.-. ..-....+..+....+..++|.+|||+.. .++...+...|+ +.+.. . ..++.++......+..+..+
T Consensus 169 hERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a--~Kfq~yf~n~Pl-l~vpg-~---~PvEi~Yt~e~erDylEaai 241 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNRPDLKLVVMSATLDA--EKFQRYFGNAPL-LAVPG-T---HPVEIFYTPEPERDYLEAAI 241 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhCCCceEEEeecccch--HHHHHHhCCCCe-eecCC-C---CceEEEecCCCChhHHHHHH
Confidence 9632 11123444555555588999999999863 344444444444 33332 1 22343333333334444444
Q ss_pred HHHHhc--CCCCCCEEEEECCchhHHHHHHHHhhh--------cCCeEEEEcCCCCHHHHHHHHHHHh---cC--CCcEE
Q 012059 311 DILMSK--QHFTPPAVVYVGSRLGADLLSNAISVT--------TGMKALSIHGEKPMKERREIMRSFL---VG--EVPVI 375 (472)
Q Consensus 311 ~~l~~~--~~~~~~~lIf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~vL 375 (472)
..+.+. ....+-+|||....++.+..++.+... ...++..+| +.++..+++.-. +| ..+|+
T Consensus 242 rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV 317 (699)
T KOG0925|consen 242 RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV 317 (699)
T ss_pred HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE
Confidence 444332 234567999999999999888887622 135677777 334444443332 22 46799
Q ss_pred EEeccccccCCCCCCcEEEEecC------------------CCCHhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 376 VATGILGRGVELLGVRQVIIFDM------------------PNSIKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 376 vaT~~~~~Gidi~~~~~VI~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
|+|++++..+.++++.+||+.++ |.|-.+..||.||+||. .+|+|+.+|++.
T Consensus 318 vstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 318 VSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999999998553 55888899999999997 689999999865
No 135
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=5.9e-19 Score=166.22 Aligned_cols=326 Identities=12% Similarity=0.070 Sum_probs=229.8
Q ss_pred HHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
+.++.-.....+|.+++..+-.|++.++.-.|.+||.+++.+.....+.. ......+++.|+.++++...+.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL--------CHATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc--------CcccceecchhHHHHhhccCCc
Confidence 34555567889999999999999999999999999999999888776554 3455688899999998765443
Q ss_pred HHHHh---cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCC----CCCeeEEEEeccchhhhcCcH
Q 012059 169 AKLLG---KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIE----LDDIRMFVLDEVDCMLQRGFR 241 (472)
Q Consensus 169 ~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~----~~~~~~iVvDE~h~~~~~~~~ 241 (472)
+.-.. +...-.++..+.+.+......-.+.+.+++++.|.........+..+ +-...++++||+|...-. +.
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TK 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hh
Confidence 22111 11122345566677766666777889999999999887655443332 234567999999976432 22
Q ss_pred H----HHHHHHHhC------CCCceEeecccccHHHHHHHhhhcCCc-EEEEeCCCCCCccceeEEEEEecc--------
Q 012059 242 D----QVMQIFRAI------SLPQILMYSATISQEVEKMSSSISKDI-VVVSVGKPNMPNKAVKQLAIWVES-------- 302 (472)
Q Consensus 242 ~----~~~~i~~~~------~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-------- 302 (472)
. +++.++..+ .+.+++-.+||+...++-+...+.-+- ..+..... +..-.+.+.|.+.
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS---Ps~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS---PSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC---CCccceEEEeCCCCCCcchhh
Confidence 2 222222222 567889999999877765554443332 22322222 2223445555432
Q ss_pred -hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc---C----CeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 012059 303 -NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT---G----MKALSIHGEKPMKERREIMRSFLVGEVPV 374 (472)
Q Consensus 303 -~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~---~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 374 (472)
+.+......++.+....+-++|-||.++..|+.+....+... + ..+..+.|+...++|..+....-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 123333344444444456689999999999998877665211 1 23456889999999999999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEc
Q 012059 375 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 426 (472)
Q Consensus 375 LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 426 (472)
+|+|++++-||||..++.|++.++|.|+..+.|..|||||-.+++.++.+..
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999888766554443
No 136
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=2.4e-19 Score=166.23 Aligned_cols=327 Identities=14% Similarity=0.189 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 95 DMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
..+.|+|.+.+...+ .|..+++...+|.|||+.++..+..+.. ....||+||..-+ -.|.+.+++|.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra-----------EwplliVcPAsvr-ftWa~al~r~l 264 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA-----------EWPLLIVCPASVR-FTWAKALNRFL 264 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh-----------cCcEEEEecHHHh-HHHHHHHHHhc
Confidence 367899999998876 7889999999999999975443333322 2338999997655 44899999887
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-C
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-S 252 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~ 252 (472)
....- +..+.++.+... .+.....|.|.+++.+..+-. .+.-..+.+||+||+|++-+.. ......++.-+ .
T Consensus 265 ps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 265 PSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKV 337 (689)
T ss_pred ccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHH
Confidence 65432 444444443321 122335699999998866543 2233458899999999886543 12222222222 3
Q ss_pred CCceEeeccccc----H---------------HHHHHHhhhcCC-cE--EEEeCC-C-----------------------
Q 012059 253 LPQILMYSATIS----Q---------------EVEKMSSSISKD-IV--VVSVGK-P----------------------- 286 (472)
Q Consensus 253 ~~~~i~~SAT~~----~---------------~~~~~~~~~~~~-~~--~i~~~~-~----------------------- 286 (472)
..++|++|+|+. . ...+++..+..- .+ ...... .
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999952 1 111122111110 00 000000 0
Q ss_pred -CCCccceeEEEEEe-cc-------------------------------------hhHHHHHHHHHHh----cCCCCCCE
Q 012059 287 -NMPNKAVKQLAIWV-ES-------------------------------------NKKKQKLFDILMS----KQHFTPPA 323 (472)
Q Consensus 287 -~~~~~~~~~~~~~~-~~-------------------------------------~~~~~~l~~~l~~----~~~~~~~~ 323 (472)
..++. .+.+.++ .. ..|...+.+.+.. ......|.
T Consensus 418 ~qLPpK--rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 418 KQLPPK--RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred hhCCcc--ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 00111 1111111 00 0011222233333 12234589
Q ss_pred EEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEeccccccCCCCCCcEEEEecCCCC
Q 012059 324 VVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV-IVATGILGRGVELLGVRQVIIFDMPNS 401 (472)
Q Consensus 324 lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gidi~~~~~VI~~~~p~s 401 (472)
+|||-.....+.+...+. ..+.....+.|..+..+|....+.|+.+ ++.| +++..+++.|+++...+.|++...+++
T Consensus 496 lVFaHH~~vLd~Iq~~~~-~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wn 574 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVN-KRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWN 574 (689)
T ss_pred EEEehhHHHHHHHHHHHH-HcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCC
Confidence 999999999999999998 7889999999999999999999999955 5555 456678899999999999999999999
Q ss_pred HhHHHHhhcccccCCCcceEEEEEc--CC--ChHHHHHHHHHHHHc
Q 012059 402 IKEYVHQIGRASQMGDEGTAIVFVN--EE--NKNLFQELVDILKSS 443 (472)
Q Consensus 402 ~~~~~Qr~GR~~R~g~~g~~~~~~~--~~--~~~~~~~l~~~l~~~ 443 (472)
+.-.+|.=-|++|.|++..+.+.|. .. |......+.+.|...
T Consensus 575 PgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 575 PGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred CceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 9999999999999999866554442 22 333444444444443
No 137
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=173.72 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEeccc
Q 012059 304 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE--VPVIVATGIL 381 (472)
Q Consensus 304 ~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 381 (472)
.|.+.|.-+|.+.+..++++|||.......+.|..+|. ..|+....+.|...-++|+..++.|+.+. ...+++|...
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLn-yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLN-YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHh-hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 46677777888888888999999999999999999998 88999999999999999999999999874 4567899999
Q ss_pred cccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCc--ceEEEEEcCCC
Q 012059 382 GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE--GTAIVFVNEEN 429 (472)
Q Consensus 382 ~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~~ 429 (472)
+.|||+.+++.||+||..|++..-.|.--|+.|.|+. =+.|-|+++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999999999999999999889999999998875 45666777653
No 138
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.5e-19 Score=180.51 Aligned_cols=320 Identities=15% Similarity=0.145 Sum_probs=217.9
Q ss_pred CCCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 95 DMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.++.+||.+.+.+.. .+-|.|+...||.|||.. .+.++.++++.+ ...+..||+||+..|.+ |..++.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K------~~~GP~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK------QMQGPFLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc------ccCCCeEEeccccccCC-chhhcc
Confidence 378999999998865 446899999999999985 677777777633 23344899999999988 888888
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHH--HHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVY--RIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
.++.. +..+.+.|......... .....++|+++|++.+.. .+..+.--++.|+||||.|+|.+. ...+...+
T Consensus 465 kWaPS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L 538 (1157)
T KOG0386|consen 465 KWAPS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTL 538 (1157)
T ss_pred ccccc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHh
Confidence 88654 44555554433222211 223569999999988755 111112235679999999999543 44455444
Q ss_pred H-hCCCCceEeecccc----------------------------------------------------------------
Q 012059 249 R-AISLPQILMYSATI---------------------------------------------------------------- 263 (472)
Q Consensus 249 ~-~~~~~~~i~~SAT~---------------------------------------------------------------- 263 (472)
. .......+++|+|+
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 4 33455566667761
Q ss_pred -----------cHHHHHHHhhhcC------------CcEEE-Ee--CC------------------CCCCccceeEEE--
Q 012059 264 -----------SQEVEKMSSSISK------------DIVVV-SV--GK------------------PNMPNKAVKQLA-- 297 (472)
Q Consensus 264 -----------~~~~~~~~~~~~~------------~~~~i-~~--~~------------------~~~~~~~~~~~~-- 297 (472)
|+.++...+.-+. ..... .. +. ......+++..+
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~ 698 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTL 698 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccc
Confidence 2222111110000 00000 00 00 000000010000
Q ss_pred -----EEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC--
Q 012059 298 -----IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-- 370 (472)
Q Consensus 298 -----~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-- 370 (472)
..+....|.+.|-.++-+....++++|.||........+..+|. ..++....+.|.....+|...++.|+.-
T Consensus 699 ~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~-~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 699 HYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQ-IREYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred ccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHh-hhhhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 01122345666666777777889999999999999999999998 7899999999999999999999999864
Q ss_pred -CCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 371 -EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 371 -~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
-...|++|.+.+.|+|+-.+++||+||..|++..+.|+.-||.|.|+...+-++....-
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 34468899999999999999999999999999999999999999998876666655443
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=3.5e-17 Score=174.46 Aligned_cols=135 Identities=9% Similarity=0.153 Sum_probs=91.5
Q ss_pred HHHHHHHHhcC-CCCCCEEEEECCchhHHHHHHHHhhhcCC-eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 012059 307 QKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGM-KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 384 (472)
Q Consensus 307 ~~l~~~l~~~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 384 (472)
..+...+.... ..++++||+++|....+.++..|...... ....+.-+++...|..+++.|+.++-.||++|..+.+|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 34444443322 34568999999999999999998733221 12222223333467889999999888899999999999
Q ss_pred CCCCC--CcEEEEecCCC------------------------------CHhHHHHhhcccccCCCcceEEEEEcCC--Ch
Q 012059 385 VELLG--VRQVIIFDMPN------------------------------SIKEYVHQIGRASQMGDEGTAIVFVNEE--NK 430 (472)
Q Consensus 385 idi~~--~~~VI~~~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~ 430 (472)
||+|+ +++||+...|. -...+.|.+||.-|...+--++++++.. ..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99996 58888876554 1223479999999987653355555554 44
Q ss_pred HHHHHHHHHHH
Q 012059 431 NLFQELVDILK 441 (472)
Q Consensus 431 ~~~~~l~~~l~ 441 (472)
.+-+.+.+.|.
T Consensus 898 ~Yg~~~l~sLP 908 (928)
T PRK08074 898 SYGKYFLESLP 908 (928)
T ss_pred hHHHHHHHhCC
Confidence 45555655554
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.81 E-value=1.7e-16 Score=158.88 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=84.5
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEeccccccCCC-------
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV----GEVPVIVATGILGRGVEL------- 387 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~Gidi------- 387 (472)
.++.++|.+.|...++.++..|.....+.+ .+.|+.+ .+...++.|++ |.-.||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~-l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEI-VIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCE-EEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 456899999999999999999975555554 4556543 45668888987 478899999999999999
Q ss_pred -C--CCcEEEEecCCCC-------------------------HhHHHHhhcccccCCCc---ceEEEEEcCCChHHHHHH
Q 012059 388 -L--GVRQVIIFDMPNS-------------------------IKEYVHQIGRASQMGDE---GTAIVFVNEENKNLFQEL 436 (472)
Q Consensus 388 -~--~~~~VI~~~~p~s-------------------------~~~~~Qr~GR~~R~g~~---g~~~~~~~~~~~~~~~~l 436 (472)
| .+++||+...|.. .-.+.|.+||.-|.... |.++++-..-.+.+-..+
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~ 625 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESW 625 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHH
Confidence 3 3889998776631 23357999999998764 555555444334444444
Q ss_pred HHH
Q 012059 437 VDI 439 (472)
Q Consensus 437 ~~~ 439 (472)
.+.
T Consensus 626 ~~~ 628 (636)
T TIGR03117 626 QES 628 (636)
T ss_pred HHH
Confidence 433
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.6e-18 Score=142.38 Aligned_cols=120 Identities=33% Similarity=0.597 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012059 304 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 383 (472)
Q Consensus 304 ~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 383 (472)
.+...+...+.+....++++||||++...++.+++.|. ..+..+..+||+++..+|..+++.|.++...+|++|.++++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLR-KPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHH-hcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 57777888887765567799999999999999999998 56888999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEE
Q 012059 384 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 424 (472)
Q Consensus 384 Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 424 (472)
|+|+|.+++||+++.|++..++.|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998888764
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=6.9e-17 Score=163.05 Aligned_cols=277 Identities=17% Similarity=0.194 Sum_probs=181.0
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|.-+--.+ ++.-|..+.||-|||+++.+|++-..+. |..|-||+++.-||..-++++..
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~----------GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT----------GKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc----------CCCeEEEeCCHHHHHhHHHHHHH
Confidence 455 6777776665444 4558999999999999999999876554 56699999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-----HHHHHc--CCCCCCCeeEEEEeccchhhhcC-----
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-----IDLLMK--HDIELDDIRMFVLDEVDCMLQRG----- 239 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-----~~~~~~--~~~~~~~~~~iVvDE~h~~~~~~----- 239 (472)
+...+|+.+.++.++....+ +...-.+||+++|+..| .+.+.. .......+.+.||||+|.++-..
T Consensus 149 vy~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPL 226 (939)
T PRK12902 149 VHRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPL 226 (939)
T ss_pred HHHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcc
Confidence 99999999999877665443 33345699999999887 333221 12234678899999999865100
Q ss_pred -----------cHHHHHHHHHhC---------------CCC---------------------------------------
Q 012059 240 -----------FRDQVMQIFRAI---------------SLP--------------------------------------- 254 (472)
Q Consensus 240 -----------~~~~~~~i~~~~---------------~~~--------------------------------------- 254 (472)
.......+...+ ...
T Consensus 227 IISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A 306 (939)
T PRK12902 227 IISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKA 306 (939)
T ss_pred cccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHH
Confidence 111111111111 011
Q ss_pred ---------------------------------------------------------------------ceEeecccccH
Q 012059 255 ---------------------------------------------------------------------QILMYSATISQ 265 (472)
Q Consensus 255 ---------------------------------------------------------------------~~i~~SAT~~~ 265 (472)
++.+||+|...
T Consensus 307 ~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~t 386 (939)
T PRK12902 307 KELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKT 386 (939)
T ss_pred HHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHH
Confidence 23344444443
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcC
Q 012059 266 EVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG 345 (472)
Q Consensus 266 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~ 345 (472)
...++.+.+..+.+.+....+..... ..-..+.....|...+.+.+......+.|+||-+.|.+..+.++..|. ..|
T Consensus 387 e~~Ef~~iY~l~Vv~IPTnkP~~R~d--~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~-~~g 463 (939)
T PRK12902 387 EEVEFEKTYKLEVTVIPTNRPRRRQD--WPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQ-EQG 463 (939)
T ss_pred HHHHHHHHhCCcEEEcCCCCCeeeec--CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHH-HcC
Confidence 33333333333333322211111100 111233455677778888888777788999999999999999999998 788
Q ss_pred CeEEEEcCCCCHHHHH-HHHHHHhcCC-CcEEEEeccccccCCCC
Q 012059 346 MKALSIHGEKPMKERR-EIMRSFLVGE-VPVIVATGILGRGVELL 388 (472)
Q Consensus 346 ~~~~~~~~~~~~~~r~-~~~~~f~~g~-~~vLvaT~~~~~Gidi~ 388 (472)
+...+++..-...+++ +++.. +|+ -.|.|||++++||.||.
T Consensus 464 i~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 464 IPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 8888888862222222 23322 564 44899999999999874
No 143
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.79 E-value=5.3e-18 Score=163.41 Aligned_cols=127 Identities=17% Similarity=0.282 Sum_probs=109.9
Q ss_pred cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc-EEEEec
Q 012059 301 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVP-VIVATG 379 (472)
Q Consensus 301 ~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vLvaT~ 379 (472)
..+.|...|-.+|......++++|+|+......+.+.++|. ..++....+.|.....+|..++.+|+...+- .|++|.
T Consensus 1025 tdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~-yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTR 1103 (1185)
T KOG0388|consen 1025 TDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLV-YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTR 1103 (1185)
T ss_pred ccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHH-hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecc
Confidence 34456667777777778888999999999999999999998 8899999999999999999999999976544 578999
Q ss_pred cccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcce--EEEEEcCC
Q 012059 380 ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT--AIVFVNEE 428 (472)
Q Consensus 380 ~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 428 (472)
+.+-|||+.+++.||+||..|++..-.|.+.||.|.|+... +|-++...
T Consensus 1104 AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1104 AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 99999999999999999999999999999999999998654 44444443
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=3.7e-17 Score=166.62 Aligned_cols=313 Identities=18% Similarity=0.260 Sum_probs=211.5
Q ss_pred CCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH-HHh
Q 012059 96 MPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLG 173 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~ 173 (472)
...|+|.++++.+. +++++++.+|+|||||.|+.++++. .....++++++|..+.+...++.+. ++.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----------PDTIGRAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----------CccceEEEEecchHHHHHHHHHHHHHhhc
Confidence 44889999999987 6678999999999999999888764 2456789999999999887666654 566
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC---c--HHHHHHHH
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG---F--RDQVMQIF 248 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~---~--~~~~~~i~ 248 (472)
...|..++-+.|..+..- .+....+|+|+||+++..+ . ..+.+++.|.||+|.+.... + .-.+..+-
T Consensus 1212 ~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia 1283 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIA 1283 (1674)
T ss_pred cccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHH
Confidence 666677777766655443 3445579999999999777 1 57789999999999887322 0 01134444
Q ss_pred HhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecch---hH----HHHHHHHHHhcCCCC
Q 012059 249 RAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN---KK----KQKLFDILMSKQHFT 320 (472)
Q Consensus 249 ~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~----~~~l~~~l~~~~~~~ 320 (472)
..+ +..+++++|..+.+ ..++ +......+....+..........+..+... .. ..-....+.+....+
T Consensus 1284 ~q~~k~ir~v~ls~~lan-a~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLAN-ARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHHhheeEEEeehhhcc-chhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 444 77889999988776 3333 222222122222222122222222222211 11 122233344444566
Q ss_pred CCEEEEECCchhHHHHHHHHh-----------------------hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012059 321 PPAVVYVGSRLGADLLSNAIS-----------------------VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA 377 (472)
Q Consensus 321 ~~~lIf~~~~~~~~~l~~~L~-----------------------~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 377 (472)
.+.+||+++++++..++..|- +.....+. |.+++..+..-+...|..|.+.|+|.
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~ 1437 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVM 1437 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEE
Confidence 789999999999888765442 11122222 88999999999999999999999988
Q ss_pred eccccccCCCCCCcEEEE----ec------CCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHH
Q 012059 378 TGILGRGVELLGVRQVII----FD------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 378 T~~~~~Gidi~~~~~VI~----~~------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 437 (472)
..- ..|+-...--+|+. || .+.++.+..||+|+|.| .|+|++++...++.+++++.
T Consensus 1438 s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1438 SRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred Ecc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 876 77777554333332 22 24458899999999998 56999999999887777654
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=2.5e-18 Score=127.06 Aligned_cols=77 Identities=43% Similarity=0.780 Sum_probs=73.8
Q ss_pred HHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCC
Q 012059 339 AISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG 416 (472)
Q Consensus 339 ~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g 416 (472)
.|. ..++.+..+||+++..+|..+++.|++++..|||||+++++|+|+|++++||+++.|+++.+|.|++||++|.|
T Consensus 2 ~L~-~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLE-KKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHH-HTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChH-HCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 354 77999999999999999999999999999999999999999999999999999999999999999999999986
No 146
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=7.3e-17 Score=134.29 Aligned_cols=143 Identities=34% Similarity=0.510 Sum_probs=110.7
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 191 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (472)
+++++.+|||+|||.+++..+...... ....+++|++|++.++.|+.+.+...... +..+..+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 468999999999999887777765443 34578999999999999999999888765 567777777766665
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHH-HHHHHhCCCCceEeecccc
Q 012059 192 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQV-MQIFRAISLPQILMYSATI 263 (472)
Q Consensus 192 ~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~-~~i~~~~~~~~~i~~SAT~ 263 (472)
.........+|+++|++.+.............++++|+||+|.+......... ..........+++++|||+
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55555677999999999998888766555667899999999999766544332 2233344788999999995
No 147
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=1.9e-16 Score=152.91 Aligned_cols=118 Identities=21% Similarity=0.292 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhc-CCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHh--cCCCcEE-EEecc
Q 012059 305 KKQKLFDILMSK-QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL--VGEVPVI-VATGI 380 (472)
Q Consensus 305 ~~~~l~~~l~~~-~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vL-vaT~~ 380 (472)
+....+..+... .....+++|...-......+...|. ..|+....+||....++|+.+++.|+ +|..+|+ ++-.+
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~-~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQ-KGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHh-hCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 333444444433 3445577777766677777788887 78999999999999999999999998 4445665 55567
Q ss_pred ccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEE
Q 012059 381 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 423 (472)
Q Consensus 381 ~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 423 (472)
.+.|+|+...+|+|..|+-|++.--.|...|..|.|++..+++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 8899999999999999999999999999999999998765554
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.72 E-value=1.4e-15 Score=141.44 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=105.4
Q ss_pred HHHHHHHHHHh--cCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEecc
Q 012059 305 KKQKLFDILMS--KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV-IVATGI 380 (472)
Q Consensus 305 ~~~~l~~~l~~--~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~ 380 (472)
|.+.|.+.+.. .....-+.|||.......+.+.-.|. +.|+.++.+.|+|++..|...++.|.++ .+.| |++-.+
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~-kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLG-KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhh-ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 44444444332 22334478999998888999988888 8899999999999999999999999977 5665 466678
Q ss_pred ccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCc--ceEEEEEcCCChHHHHHHHHHHHHcC
Q 012059 381 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE--GTAIVFVNEENKNLFQELVDILKSSG 444 (472)
Q Consensus 381 ~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~~~~~~~~l~~~l~~~~ 444 (472)
.+.-+|+..+++|+++|+-|++..-.|...|..|.|+. =.++.|+-+... -.++++.-++..
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi--E~kIieLQeKKa 763 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI--EEKIIELQEKKA 763 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccH--HHHHHHHHHHHh
Confidence 88889999999999999999999999999999999974 466666655532 234455444433
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.72 E-value=2.9e-14 Score=147.57 Aligned_cols=130 Identities=18% Similarity=0.312 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEecccc
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL----VGEVPVIVATGILG 382 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~ 382 (472)
..+.+.+.......+.+|||++|....+.++..|....+..+ ..+|.. .+..+++.|+ .|+..||++|..+.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 344444443333455699999999999999999874444443 345542 4667887776 46778999999999
Q ss_pred ccCCCCC--CcEEEEecCCC----C--------------------------HhHHHHhhcccccCCCcceEEEEEcCC--
Q 012059 383 RGVELLG--VRQVIIFDMPN----S--------------------------IKEYVHQIGRASQMGDEGTAIVFVNEE-- 428 (472)
Q Consensus 383 ~Gidi~~--~~~VI~~~~p~----s--------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~-- 428 (472)
+|||+|+ +++||+...|. + ...+.|.+||.-|...+--+++++++.
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~ 676 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLL 676 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccccc
Confidence 9999996 78999877654 1 123478999999987653345555554
Q ss_pred ChHHHHHHHHHH
Q 012059 429 NKNLFQELVDIL 440 (472)
Q Consensus 429 ~~~~~~~l~~~l 440 (472)
...+-+.+++.|
T Consensus 677 ~~~Yg~~~l~sL 688 (697)
T PRK11747 677 TKRYGKRLLDAL 688 (697)
T ss_pred chhHHHHHHHhC
Confidence 333445555443
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=3.1e-16 Score=159.98 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=103.8
Q ss_pred EecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC-CcEEEE
Q 012059 299 WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE-VPVIVA 377 (472)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vLva 377 (472)
+.....|...+...+......+.|+||-+.|.+..+.++..|. ..|++..++++.....+-+-+-+ +|+ -.|.||
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~-~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIA 682 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLK-MRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIA 682 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHH-HcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEe
Confidence 3455567788888888888889999999999999999999998 67888777777655444333333 453 448999
Q ss_pred eccccccCCCC--------CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 378 TGILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 378 T~~~~~Gidi~--------~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
|++++||.||. +==+||--..+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 683 TNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 683 TNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred ccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999999986 224788888999999999999999999999999999998774
No 151
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=5e-17 Score=141.94 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=102.8
Q ss_pred CCCHHHHHHHhhHhc-------CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALS-------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~-------~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
+|+++|.+++..+.. ++++++.+|||||||.+++..+..... ++++++|+..|+.|+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------------~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------------KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------------EEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------------ceeEecCHHHHHHHHHHH
Confidence 579999999999883 689999999999999987755544321 699999999999999999
Q ss_pred HHHHhcCCCCeEEE-----------EEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC-----------CCCCCeeE
Q 012059 169 AKLLGKGLPFKTAL-----------VVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD-----------IELDDIRM 226 (472)
Q Consensus 169 ~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~-----------~~~~~~~~ 226 (472)
+..+.......... ..................+++++|.+.+........ ......++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T PF04851_consen 70 FDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDL 149 (184)
T ss_dssp HHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESE
T ss_pred HHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCE
Confidence 97775432111100 001111112222223467899999999987765421 22346789
Q ss_pred EEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccccc
Q 012059 227 FVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 227 iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
||+||||++....- ...++. .+...+|+||||+.
T Consensus 150 vI~DEaH~~~~~~~---~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 150 VIIDEAHHYPSDSS---YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp EEEETGGCTHHHHH---HHHHHH-SSCCEEEEEESS-S
T ss_pred EEEehhhhcCCHHH---HHHHHc-CCCCeEEEEEeCcc
Confidence 99999999864431 334444 77888999999985
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.9e-14 Score=150.10 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 167 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 167 (472)
+.|..++|.|.+.+..+. .++++++.+|||+|||++.+.+++.+.... +..+++++++.|..-..|+.+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-------~~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-------PEVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-------cccccEEEEcccchHHHHHHH
Confidence 457777999999987765 788999999999999999999998876431 234689999999998899999
Q ss_pred HHHHHh
Q 012059 168 QAKLLG 173 (472)
Q Consensus 168 ~~~~~~ 173 (472)
++++..
T Consensus 79 Elk~~~ 84 (705)
T TIGR00604 79 ELRKLM 84 (705)
T ss_pred HHHhhh
Confidence 998853
No 153
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=7.7e-16 Score=145.31 Aligned_cols=268 Identities=18% Similarity=0.179 Sum_probs=169.3
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV 193 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (472)
++-+|||.||||.-+ ++++.. ....++..|.|-||.++++.+++.+ +.+-.++|.+......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~----------aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS----------AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLD 255 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh----------hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCC
Confidence 556899999999854 344432 4558999999999999888887764 4555555543322211
Q ss_pred HHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCC--CCceEeecccccHHHHHHH
Q 012059 194 YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS--LPQILMYSATISQEVEKMS 271 (472)
Q Consensus 194 ~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~--~~~~i~~SAT~~~~~~~~~ 271 (472)
. ...+..+=||.|+.. .-..+++.|+||++.|.+...+-.+.+-+--+. .....+=-|- -+-++.+.
T Consensus 256 ~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsv-ldlV~~i~ 324 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSV-LDLVRKIL 324 (700)
T ss_pred C--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchH-HHHHHHHH
Confidence 0 112456666643221 123588999999999988775544444433331 1111111111 11133333
Q ss_pred hhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEE
Q 012059 272 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 351 (472)
Q Consensus 272 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 351 (472)
+-...+ +.+...... ..-.-.+.++.-+.... .+-+ |.|-|++....+...+.+..+.++.++
T Consensus 325 k~TGd~-vev~~YeRl-------------~pL~v~~~~~~sl~nlk--~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953|consen 325 KMTGDD-VEVREYERL-------------SPLVVEETALGSLSNLK--PGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred hhcCCe-eEEEeeccc-------------CcceehhhhhhhhccCC--CCCe-EEEeehhhHHHHHHHHHHhcCcceEEE
Confidence 322222 222211111 11001112233332222 2234 456678888888888886666779999
Q ss_pred cCCCCHHHHHHHHHHHhc--CCCcEEEEeccccccCCCCCCcEEEEecCC---------CCHhHHHHhhcccccCCC---
Q 012059 352 HGEKPMKERREIMRSFLV--GEVPVIVATGILGRGVELLGVRQVIIFDMP---------NSIKEYVHQIGRASQMGD--- 417 (472)
Q Consensus 352 ~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p---------~s~~~~~Qr~GR~~R~g~--- 417 (472)
+|+++++.|...-..|++ ++++||||||++++|+|+. ++-||+++.- .+..+..|..|||||.|.
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999999999999997 8999999999999999965 7888887753 367889999999999985
Q ss_pred cceEEEEEcCC
Q 012059 418 EGTAIVFVNEE 428 (472)
Q Consensus 418 ~g~~~~~~~~~ 428 (472)
.|.+.++..++
T Consensus 467 ~G~vTtl~~eD 477 (700)
T KOG0953|consen 467 QGEVTTLHSED 477 (700)
T ss_pred CceEEEeeHhh
Confidence 37777776654
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.69 E-value=1e-14 Score=152.16 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=82.6
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccccccCCCCC--CcEEEE
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV-PVIVATGILGRGVELLG--VRQVII 395 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gidi~~--~~~VI~ 395 (472)
.++++|||++|...++.+++.+...........+|..+ +...++.|.++.- .++|+|..+++|+|+|+ ++.||+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 34589999999999999999998322212334455444 4478888886644 89999999999999986 578888
Q ss_pred ecCCC------------------------------CHhHHHHhhcccccCCCcceEEEEEcCC-C-hHHHHHHHHHHHH
Q 012059 396 FDMPN------------------------------SIKEYVHQIGRASQMGDEGTAIVFVNEE-N-KNLFQELVDILKS 442 (472)
Q Consensus 396 ~~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~-~~~~~~l~~~l~~ 442 (472)
...|. -+....|.+||+-|.-.+.-++++++.. . ...-+.+.+.+..
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~ 633 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPP 633 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCC
Confidence 77665 2345689999999976554444444443 2 2244444444443
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=2e-15 Score=112.72 Aligned_cols=81 Identities=40% Similarity=0.688 Sum_probs=75.7
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhccccc
Q 012059 335 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 414 (472)
Q Consensus 335 ~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R 414 (472)
.++..|. ..++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||+++.|++...|.|++||++|
T Consensus 2 ~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 2 ELAELLK-ELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred HHHHHHH-HCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 4566676 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 012059 415 MG 416 (472)
Q Consensus 415 ~g 416 (472)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 75
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.60 E-value=1.1e-13 Score=140.72 Aligned_cols=283 Identities=14% Similarity=0.107 Sum_probs=168.7
Q ss_pred EEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH
Q 012059 115 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY 194 (472)
Q Consensus 115 iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 194 (472)
+..+.+|||||.+|+-.+-..+. .|..+||++|...|..|+.+.++..+.. ..+..++++.+..+...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~----------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR----------AGRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH----------cCCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHH
Confidence 33444699999998776665553 3677999999999999999988876531 45777888766554443
Q ss_pred H---HhcC-CCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC------cHHHHHHHHHhCCCCceEeeccccc
Q 012059 195 R---IQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG------FRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 195 ~---~~~~-~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~------~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
. ...| ..|+|+|-. .-...+.++++||+||-|.-.-.. ...++.....+..+..+|+.|||++
T Consensus 232 ~w~~~~~G~~~IViGtRS-------AvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRS-------AVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred HHHHHhCCCCcEEEEcce-------eEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 3 3344 789999932 122367899999999999643221 2245666666678999999999998
Q ss_pred HHHHHHHhhhcCCcEEEEeCC--CCCCccceeEEEEE---ec----c--hhHHHHHHHHHHhcCCCCCCEEEEECCchhH
Q 012059 265 QEVEKMSSSISKDIVVVSVGK--PNMPNKAVKQLAIW---VE----S--NKKKQKLFDILMSKQHFTPPAVVYVGSRLGA 333 (472)
Q Consensus 265 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~---~~----~--~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~ 333 (472)
-+....+..- ....+.... .......+...... .. . ..-...+++.+.+....+ ++|||+|.+..+
T Consensus 305 les~~~~~~g--~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGya 381 (665)
T PRK14873 305 AEAQALVESG--WAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYV 381 (665)
T ss_pred HHHHHHHhcC--cceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCC
Confidence 5554333211 111111110 01111111111100 00 0 001134555666555666 999999988766
Q ss_pred HHHHHHHhhhcCCeEE--------EEcC-----------------------C-------CC------------------H
Q 012059 334 DLLSNAISVTTGMKAL--------SIHG-----------------------E-------KP------------------M 357 (472)
Q Consensus 334 ~~l~~~L~~~~~~~~~--------~~~~-----------------------~-------~~------------------~ 357 (472)
..+...=+ |+.+. .+|. + .. .
T Consensus 382 p~l~C~~C---g~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r 458 (665)
T PRK14873 382 PSLACARC---RTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT 458 (665)
T ss_pred CeeEhhhC---cCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE
Confidence 55422111 11000 0010 0 00 1
Q ss_pred HHHHHHHHHHhcCCCcEEEEec----cccccCCCCCCcEEEEecCCC------------CHhHHHHhhcccccCCCcceE
Q 012059 358 KERREIMRSFLVGEVPVIVATG----ILGRGVELLGVRQVIIFDMPN------------SIKEYVHQIGRASQMGDEGTA 421 (472)
Q Consensus 358 ~~r~~~~~~f~~g~~~vLvaT~----~~~~Gidi~~~~~VI~~~~p~------------s~~~~~Qr~GR~~R~g~~g~~ 421 (472)
.+++.+++.|. ++.+|||+|+ +++ +++..|+..|... ....+.|..||+||....|.+
T Consensus 459 ~d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 459 SGGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred EChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEE
Confidence 12345777886 5899999999 555 3566666655322 234457889999999888999
Q ss_pred EEEEcCC
Q 012059 422 IVFVNEE 428 (472)
Q Consensus 422 ~~~~~~~ 428 (472)
++...++
T Consensus 533 ~iq~~p~ 539 (665)
T PRK14873 533 VVVAESS 539 (665)
T ss_pred EEEeCCC
Confidence 9886444
No 157
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.59 E-value=4.2e-14 Score=140.74 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhh---------------------hcCCeEEEEcCCCCHHHHHH
Q 012059 304 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV---------------------TTGMKALSIHGEKPMKERRE 362 (472)
Q Consensus 304 ~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~---------------------~~~~~~~~~~~~~~~~~r~~ 362 (472)
.+...|+++|......+.+.|||..|....+.+..+|.. ..|...+.+.|......|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 455677788877777888999999999999999988872 11345678899999999999
Q ss_pred HHHHHhcC-CC---cEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEc
Q 012059 363 IMRSFLVG-EV---PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 426 (472)
Q Consensus 363 ~~~~f~~g-~~---~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 426 (472)
..+.|++- +. -.||+|.+.+-|||+-+++-||+||..|++.--.|.|=|+-|.|+.--||++-.
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 99999864 22 268999999999999999999999999999999999999999998766665543
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.57 E-value=4.4e-13 Score=138.00 Aligned_cols=310 Identities=18% Similarity=0.145 Sum_probs=175.1
Q ss_pred CCCHHHHHHHhhHhc----C--Cc--EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALS----G--KS--LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 167 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~----~--~~--~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 167 (472)
.-+.||-+|+..+.+ . .. ++-.|.||+|||++ =.-++..|.. ...+.+..|..-.|.|-.|.-+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd-------~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRD-------DKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCC-------CCCCceEEEEccccceeccchH
Confidence 456799999988762 1 12 55589999999985 3333333322 2456678888888888777766
Q ss_pred HHHHHhcCCCCeEEEEEcCcchHHHHH-------------------------------------------HHhc------
Q 012059 168 QAKLLGKGLPFKTALVVGGDAMARQVY-------------------------------------------RIQQ------ 198 (472)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------------------------------------~~~~------ 198 (472)
.+++-..--+-...+++|+....+... .+.+
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 666543322233444455322211110 0000
Q ss_pred --CCCEEEeChHHHHHHHHcCC--C-CCC--C--eeEEEEeccchhhhcCcHHHHHHHHH--hCCCCceEeecccccHHH
Q 012059 199 --GVELIVGTPGRLIDLLMKHD--I-ELD--D--IRMFVLDEVDCMLQRGFRDQVMQIFR--AISLPQILMYSATISQEV 267 (472)
Q Consensus 199 --~~~I~i~Tp~~l~~~~~~~~--~-~~~--~--~~~iVvDE~h~~~~~~~~~~~~~i~~--~~~~~~~i~~SAT~~~~~ 267 (472)
...|+|||++.++....... . .+. . -+.|||||+|.+-.. ....+..++. .....+++++|||+|..+
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 14599999999987763211 1 111 1 247999999976322 2344555555 236789999999999876
Q ss_pred HHHHh-hh----------cC---CcEEE---EeCCCCCC--------------------------ccceeEE--EEEecc
Q 012059 268 EKMSS-SI----------SK---DIVVV---SVGKPNMP--------------------------NKAVKQL--AIWVES 302 (472)
Q Consensus 268 ~~~~~-~~----------~~---~~~~i---~~~~~~~~--------------------------~~~~~~~--~~~~~~ 302 (472)
..... .+ .. .+..+ -+...... ....... ...+..
T Consensus 639 ~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~ 718 (1110)
T TIGR02562 639 VKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSS 718 (1110)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCC
Confidence 54321 11 11 11111 11110000 0001111 111111
Q ss_pred h-----hHHHHHHHHHH-------hcC----CCCCC----EEEEECCchhHHHHHHHHhhh-----cCCeEEEEcCCCCH
Q 012059 303 N-----KKKQKLFDILM-------SKQ----HFTPP----AVVYVGSRLGADLLSNAISVT-----TGMKALSIHGEKPM 357 (472)
Q Consensus 303 ~-----~~~~~l~~~l~-------~~~----~~~~~----~lIf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~ 357 (472)
. .....+...+. +.. ...++ .||-+.++..+-.++..|... ..+.+.++|+..+.
T Consensus 719 ~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l 798 (1110)
T TIGR02562 719 LPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPL 798 (1110)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChH
Confidence 1 11112222221 111 11222 467777777777777776522 23457889999988
Q ss_pred HHHHHHHHHH----------------------hc----CCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcc
Q 012059 358 KERREIMRSF----------------------LV----GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGR 411 (472)
Q Consensus 358 ~~r~~~~~~f----------------------~~----g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR 411 (472)
..|..+++.. .+ +...|+|+|++.+.|+|+. .+.+| .-|.++...+|++||
T Consensus 799 ~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR 875 (1110)
T TIGR02562 799 LLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGR 875 (1110)
T ss_pred HHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhc
Confidence 7777766553 11 3567999999999999954 44444 445669999999999
Q ss_pred cccCCC
Q 012059 412 ASQMGD 417 (472)
Q Consensus 412 ~~R~g~ 417 (472)
+.|.|.
T Consensus 876 ~~R~~~ 881 (1110)
T TIGR02562 876 VNRHRL 881 (1110)
T ss_pred cccccc
Confidence 999885
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=2.3e-13 Score=147.65 Aligned_cols=322 Identities=17% Similarity=0.196 Sum_probs=203.0
Q ss_pred CCCCCHHHHHHHhhHh-----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 94 YDMPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~-----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
...++++|.+.++.+. .+.+.++...+|.|||+..+..+.. +... .....+.+++++|+..+ .+|.++
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~-----~~~~~~~~liv~p~s~~-~nw~~e 408 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLES-----IKVYLGPALIVVPASLL-SNWKRE 408 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhc-----ccCCCCCeEEEecHHHH-HHHHHH
Confidence 3467889999997744 3678899999999999864444333 2221 01114579999997555 558888
Q ss_pred HHHHhcCCCCeEEEEEcCcch----HHHHHHHhcC-----CCEEEeChHHHHHHHH-cCCCCCCCeeEEEEeccchhhhc
Q 012059 169 AKLLGKGLPFKTALVVGGDAM----ARQVYRIQQG-----VELIVGTPGRLIDLLM-KHDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 169 ~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~-----~~I~i~Tp~~l~~~~~-~~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
+.++...... +...+|.... .+....+... .+++++|++.+..... ...+.-..++++|+||+|.+.+.
T Consensus 409 ~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 409 FEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred HhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 8888765432 5555554431 3333333332 7999999999987421 12233456789999999997544
Q ss_pred CcHHHHHHHHHhCCCCceEeecccc-cHHHHHHH--------------------hhh-----------------------
Q 012059 239 GFRDQVMQIFRAISLPQILMYSATI-SQEVEKMS--------------------SSI----------------------- 274 (472)
Q Consensus 239 ~~~~~~~~i~~~~~~~~~i~~SAT~-~~~~~~~~--------------------~~~----------------------- 274 (472)
. .....-+..+.....+++|+|+ .+.+.++. .++
T Consensus 488 ~--s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 488 Q--SSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred h--hHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 3 1111222233333335555553 00000000 000
Q ss_pred --------c----CCc-EEEEe------------------------C-------------CCCC--------C-------
Q 012059 275 --------S----KDI-VVVSV------------------------G-------------KPNM--------P------- 289 (472)
Q Consensus 275 --------~----~~~-~~i~~------------------------~-------------~~~~--------~------- 289 (472)
+ .+. +.... . .... .
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 0 000 00000 0 0000 0
Q ss_pred --ccceeEEEEEe-----------------------------cch-hHHHHHHHHH-HhcCCCCC--CEEEEECCchhHH
Q 012059 290 --NKAVKQLAIWV-----------------------------ESN-KKKQKLFDIL-MSKQHFTP--PAVVYVGSRLGAD 334 (472)
Q Consensus 290 --~~~~~~~~~~~-----------------------------~~~-~~~~~l~~~l-~~~~~~~~--~~lIf~~~~~~~~ 334 (472)
...+....... ... .+...+.+++ ......+. +++||+......+
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~ 725 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLD 725 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHH
Confidence 00000000000 011 4556666666 45555566 8999999999999
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhccc
Q 012059 335 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG--EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRA 412 (472)
Q Consensus 335 ~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~ 412 (472)
.+...+. ..++....++|.++.++|...++.|.++ ..-+++++.+.+.|+|+..+++||++|..+++....|+..|+
T Consensus 726 il~~~l~-~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa 804 (866)
T COG0553 726 LLEDYLK-ALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred HHHHHHH-hcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHH
Confidence 9999998 6668899999999999999999999986 344567788999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEEc
Q 012059 413 SQMGDEGTAIVFVN 426 (472)
Q Consensus 413 ~R~g~~g~~~~~~~ 426 (472)
.|.|+...+.++-.
T Consensus 805 ~RigQ~~~v~v~r~ 818 (866)
T COG0553 805 HRIGQKRPVKVYRL 818 (866)
T ss_pred HHhcCcceeEEEEe
Confidence 99998765544443
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.54 E-value=1.9e-11 Score=116.88 Aligned_cols=289 Identities=14% Similarity=0.221 Sum_probs=199.9
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHhcC-------------CCCe------EEEEEcCcchHHHHHHHhc---------
Q 012059 147 QKNPLAMVLTPTRELCIQVEEQAKLLGKG-------------LPFK------TALVVGGDAMARQVYRIQQ--------- 198 (472)
Q Consensus 147 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~------~~~~~~g~~~~~~~~~~~~--------- 198 (472)
-..|+||||+|+|..|-++.+.+-.+... +++. ...-............+..
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 35789999999999999988877776533 1100 0000000111112222211
Q ss_pred ----------------CCCEEEeChHHHHHHHHc------CCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC---C-
Q 012059 199 ----------------GVELIVGTPGRLIDLLMK------HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---S- 252 (472)
Q Consensus 199 ----------------~~~I~i~Tp~~l~~~~~~------~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~---~- 252 (472)
++||+||+|=-|...+.. ..--++++.++|+|.||.+. ++-+..+..++..+ |
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCC
Confidence 367999999888877764 12237889999999999876 44456666666665 1
Q ss_pred ---------------------CCceEeecccccHHHHHHHhhhcCCcE---EEEeCCC-----CCCccceeEEEEEecch
Q 012059 253 ---------------------LPQILMYSATISQEVEKMSSSISKDIV---VVSVGKP-----NMPNKAVKQLAIWVESN 303 (472)
Q Consensus 253 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~---~i~~~~~-----~~~~~~~~~~~~~~~~~ 303 (472)
-+|+|++|+...+++..+....+.+.. .+..... ......+.|.+...+..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 148999999999888888776544331 1111111 22333456666554332
Q ss_pred h-------HH----HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 012059 304 K-------KK----QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 372 (472)
Q Consensus 304 ~-------~~----~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 372 (472)
. +. ..++..+.. ....+.+|||++|.-.--.+.++|+ ..+.....+|.-.+..+-.++-..|..|+.
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-KENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-hcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 1 11 223333332 3455689999999999999999998 889999999999999999999999999999
Q ss_pred cEEEEecc--ccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCC------cceEEEEEcCCChHHHHHHHH
Q 012059 373 PVIVATGI--LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD------EGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 373 ~vLvaT~~--~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~------~g~~~~~~~~~~~~~~~~l~~ 438 (472)
+||+.|.- .=+-..+.++++||+|++|..+.-|...++-.+.... ...|.++++.-|.-.+..++-
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99999983 3456788999999999999999888877765544332 479999999999877777664
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.49 E-value=7.5e-12 Score=125.84 Aligned_cols=289 Identities=16% Similarity=0.245 Sum_probs=178.0
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 192 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (472)
-.+|.+|+|||||.+ ++..+...+. ....++|+++.++.|+.+....++...-. ++. .+.......
T Consensus 51 V~vVRSpMGTGKTta-Li~wLk~~l~--------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~~- 116 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTA-LIRWLKDALK--------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDYI- 116 (824)
T ss_pred eEEEECCCCCCcHHH-HHHHHHHhcc--------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeecccccc-
Confidence 478899999999986 4444444322 35678999999999999888877764321 111 111111100
Q ss_pred HHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCc------HHHHHHHHHhC--CCCceEeeccccc
Q 012059 193 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF------RDQVMQIFRAI--SLPQILMYSATIS 264 (472)
Q Consensus 193 ~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~------~~~~~~i~~~~--~~~~~i~~SAT~~ 264 (472)
+. ....+-+++..+.|.++. ...+.++++||+||+-..+..=+ ...+..++..+ ....+|++-|++.
T Consensus 117 i~--~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 117 ID--GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred cc--ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 00 012467777777776553 22466799999999987664322 12333333333 6788999999999
Q ss_pred HHHHHHHhhhcCCc-EEEEeCCCCC---Ccccee---------------------EE----------EEEecchhHHHHH
Q 012059 265 QEVEKMSSSISKDI-VVVSVGKPNM---PNKAVK---------------------QL----------AIWVESNKKKQKL 309 (472)
Q Consensus 265 ~~~~~~~~~~~~~~-~~i~~~~~~~---~~~~~~---------------------~~----------~~~~~~~~~~~~l 309 (472)
+...++...+.++. +.+....-.. ...... .. .............
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 99999888875432 2222211000 000000 00 0000000112234
Q ss_pred HHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 012059 310 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 389 (472)
Q Consensus 310 ~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 389 (472)
...|......+.++-||+++...++.+++... .....+..++|.-+..+. +.| ++.+|++=|.++..|+++-.
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~-~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCA-RFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHH-hcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccch
Confidence 44444444566788899999999999999888 668888888887665522 222 57899999999999999864
Q ss_pred C--cEEEEecCC----CCHhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 390 V--RQVIIFDMP----NSIKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 390 ~--~~VI~~~~p----~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
. +-|+-|=-| .+..+..|++||+.... ....+++++..
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 3 334444222 23556899999997764 56788888765
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.47 E-value=1.2e-12 Score=132.22 Aligned_cols=355 Identities=18% Similarity=0.233 Sum_probs=217.8
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 177 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 177 (472)
+|+=.|.+-.+.-+..-+..+-||-|||+++.+|+.-..+. +..+.++...--||.--.+++..+...++
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~----------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA----------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC----------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 44445555555556678999999999999999998765443 56688889999999999999999999999
Q ss_pred CeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHc------CCCCCCCeeEEEEeccchhhh----------c--
Q 012059 178 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMK------HDIELDDIRMFVLDEVDCMLQ----------R-- 238 (472)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~------~~~~~~~~~~iVvDE~h~~~~----------~-- 238 (472)
+.+.+...+....+.... -.|||.++|...| .+++.. .......+.+.|+||+|.++- .
T Consensus 150 lsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 999999988866553332 3589999998776 233221 112234578999999998641 1
Q ss_pred ----CcHHHHHHHHHhC---------CCCceEeec---------------------------------------------
Q 012059 239 ----GFRDQVMQIFRAI---------SLPQILMYS--------------------------------------------- 260 (472)
Q Consensus 239 ----~~~~~~~~i~~~~---------~~~~~i~~S--------------------------------------------- 260 (472)
..+..+..+...+ ...+.+.+|
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1122333333222 111222222
Q ss_pred ----------------------------------------------------------------ccccHHHHHHHhhhcC
Q 012059 261 ----------------------------------------------------------------ATISQEVEKMSSSISK 276 (472)
Q Consensus 261 ----------------------------------------------------------------AT~~~~~~~~~~~~~~ 276 (472)
+|...+..++...+..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 1111111122121111
Q ss_pred CcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCC
Q 012059 277 DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP 356 (472)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 356 (472)
+.+.+....+.... -..-..+.....|...++..+......+.|+||-..+.+..+.+.+.|. ..+++..+++..-.
T Consensus 388 ~vv~iPTnrp~~R~--D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~-~~~i~h~VLNAk~h 464 (822)
T COG0653 388 DVVVIPTNRPIIRL--DEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLR-KAGIPHNVLNAKNH 464 (822)
T ss_pred ceeeccCCCcccCC--CCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHH-hcCCCceeeccccH
Confidence 11111111111100 0111223445567888888888888889999999999999999999998 78888877877766
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEeccccccCCCCCCc-----------EEEEecCCCCHhHHHHhhcccccCCCcceEEEE
Q 012059 357 MKERREIMRSFLVGE-VPVIVATGILGRGVELLGVR-----------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 424 (472)
Q Consensus 357 ~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~~~-----------~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 424 (472)
. ++.-+-.. +|+ --|-|||+++++|-||.--. +||--..-.|-.--.|-.||+||.|.+|.+-.|
T Consensus 465 ~--~EA~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~ 541 (822)
T COG0653 465 A--REAEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFY 541 (822)
T ss_pred H--HHHHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhh
Confidence 3 33333333 443 34789999999999985222 344444444555556889999999999998888
Q ss_pred EcCCChHHH----HHHHHHHHH----cCCCC-CHHHHhchhhcCCcCCCCCCCCC
Q 012059 425 VNEENKNLF----QELVDILKS----SGAGI-PRELINSRYTVGSFSSGKGFKKR 470 (472)
Q Consensus 425 ~~~~~~~~~----~~l~~~l~~----~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 470 (472)
++-.|.-+. ..+...+.. .+..+ ++.+...=.+++....|.++..+
T Consensus 542 lSleD~L~r~F~~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQk~vE~~n~d~r 596 (822)
T COG0653 542 LSLEDDLMRRFASDRLPALMDKLGLKEGEAIESKMVTRAVERAQRKVEGRNFDIR 596 (822)
T ss_pred hhhHHHHHHHhcchhhHHHHHhhcCCccCccccHHHHHHHHHHHHHHHhcCCcHH
Confidence 886653211 112222222 22223 34444444555556666665544
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.44 E-value=2.9e-11 Score=128.72 Aligned_cols=314 Identities=16% Similarity=0.210 Sum_probs=175.7
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 191 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (472)
+..+|+--||||||++....+ ..+... ...+.+++|+-++.|-.|..+.+..+........ ...+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHH
Confidence 569999999999999744333 333331 5688999999999999999999999976533221 3334444
Q ss_pred HHHHHhcC-CCEEEeChHHHHHHHHcCC-CCCCCe-eEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecccccHHHH
Q 012059 192 QVYRIQQG-VELIVGTPGRLIDLLMKHD-IELDDI-RMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVE 268 (472)
Q Consensus 192 ~~~~~~~~-~~I~i~Tp~~l~~~~~~~~-~~~~~~-~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~ 268 (472)
....+..+ ..|+|+|.++|-....... ....+- =+||+||||+-- ++..-..+-..+++...++||+|+-..-.
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhccceEEEeeCCcccccc
Confidence 44445544 4899999999988776541 112222 268999999853 33333444555678999999999742111
Q ss_pred HH-HhhhcCCcEEEEeCCCCCCccce-eEEEEEe------cc--------------------------------------
Q 012059 269 KM-SSSISKDIVVVSVGKPNMPNKAV-KQLAIWV------ES-------------------------------------- 302 (472)
Q Consensus 269 ~~-~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~------~~-------------------------------------- 302 (472)
.. ....+..+.....-........+ ...+... ..
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 12222333222221111100000 0000000 00
Q ss_pred ---hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc----------C--------Ce----EEEEcCCCCH
Q 012059 303 ---NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT----------G--------MK----ALSIHGEKPM 357 (472)
Q Consensus 303 ---~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~----------~--------~~----~~~~~~~~~~ 357 (472)
......+............++.+.+.++..+..+.+...... + .. ....|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 000011222222223345577777777774444443332100 0 00 00001111 1
Q ss_pred HHHHHHHHHH--hcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCc----ceEEEEEcCCChH
Q 012059 358 KERREIMRSF--LVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE----GTAIVFVNEENKN 431 (472)
Q Consensus 358 ~~r~~~~~~f--~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~----g~~~~~~~~~~~~ 431 (472)
..+......| .....++||.++++-+|.|.|.+.++ -+|-|.-....+|.+.|+.|.-.. |.++-|.. -..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e 654 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKE 654 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHH
Confidence 2233344443 35689999999999999999988555 477778888999999999997432 55555555 333
Q ss_pred HHHHHHHHHHHcC
Q 012059 432 LFQELVDILKSSG 444 (472)
Q Consensus 432 ~~~~l~~~l~~~~ 444 (472)
.+.+..+.+.+.+
T Consensus 655 ~l~~Al~~Y~~~~ 667 (962)
T COG0610 655 ALKKALKLYSNEG 667 (962)
T ss_pred HHHHHHHHhhccc
Confidence 4444444444433
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.41 E-value=2.3e-12 Score=121.65 Aligned_cols=156 Identities=16% Similarity=0.163 Sum_probs=93.9
Q ss_pred HHHHHHhhHh-------------cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHH
Q 012059 100 VQMQAIPSAL-------------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 166 (472)
Q Consensus 100 ~Q~~~i~~~~-------------~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 166 (472)
+|.+++..++ ..+.++++.++|+|||+..+..+ ..+.... .......+|||||. .+..||.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~----~~~~~~~~LIv~P~-~l~~~W~ 74 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALI-SYLKNEF----PQRGEKKTLIVVPS-SLLSQWK 74 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHH-HHHHHCC----TTSS-S-EEEEE-T-TTHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhh-hhhhhcc----ccccccceeEeecc-chhhhhh
Confidence 5777776653 33679999999999998754444 3333311 01122359999999 7778999
Q ss_pred HHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc---CCCCCCCeeEEEEeccchhhhcCcHHH
Q 012059 167 EQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK---HDIELDDIRMFVLDEVDCMLQRGFRDQ 243 (472)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~---~~~~~~~~~~iVvDE~h~~~~~~~~~~ 243 (472)
.++.++.....+++..+.+...............+++|+|++.+...... ..+...++++||+||+|.+.+. ...
T Consensus 75 ~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~ 152 (299)
T PF00176_consen 75 EEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSK 152 (299)
T ss_dssp HHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSH
T ss_pred hhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccc
Confidence 99999986545665555555412222222234588999999999811000 0011134899999999999544 344
Q ss_pred HHHHHHhCCCCceEeecccc
Q 012059 244 VMQIFRAISLPQILMYSATI 263 (472)
Q Consensus 244 ~~~i~~~~~~~~~i~~SAT~ 263 (472)
....+..+.....+++|||+
T Consensus 153 ~~~~l~~l~~~~~~lLSgTP 172 (299)
T PF00176_consen 153 RYKALRKLRARYRWLLSGTP 172 (299)
T ss_dssp HHHHHHCCCECEEEEE-SS-
T ss_pred ccccccccccceEEeecccc
Confidence 55566667888999999996
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.38 E-value=7.3e-12 Score=99.75 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=81.8
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
+|+-.++-..+|+|||.-.+--++...+. .+.++|||.|||.++..+.+.++.. +++... ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t---~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHT---NARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTTTS----SEEEES---TTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHhcC----CcccCc---eeee
Confidence 45557889999999998655555555444 5778999999999999877766533 322211 1110
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC--cHHHHHHHHHhCCCCceEeecccccHHH
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQILMYSATISQEV 267 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~--~~~~~~~i~~~~~~~~~i~~SAT~~~~~ 267 (472)
. ....+.-|-++|...+..++.+ .....++++||+||||..-... ++..+.. +.......+|++|||+|...
T Consensus 67 ~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~-~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRE-LAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHH-HHHTTS-EEEEEESS-TT--
T ss_pred c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHH-hhhccCeeEEEEeCCCCCCC
Confidence 0 1224567899999999888766 5567899999999999752221 1222222 22235568999999998754
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2.1e-10 Score=108.40 Aligned_cols=342 Identities=15% Similarity=0.221 Sum_probs=212.3
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEc-cCCCCc--chhhHHHHHHHHhhhhhccc---------------------CCCCCc
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSA-NTGSGK--TASFLVPVISQCANIRLHHS---------------------QNQKNP 150 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a-~TGsGK--T~~~~l~~~~~l~~~~~~~~---------------------~~~~~~ 150 (472)
..+++.|.+.+....+.+|++..- ..+.|+ +-+|++-+++|++..+.... +.-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 368999999999998999977532 234455 45688888988765421110 111358
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCC-e--------EEEEEcC--------cchHHHH--------------------
Q 012059 151 LAMVLTPTRELCIQVEEQAKLLGKGLPF-K--------TALVVGG--------DAMARQV-------------------- 193 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~--------~~~~~~g--------~~~~~~~-------------------- 193 (472)
+||||||+|+-|-.+...+..+.....- + ...-++| ....+..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999888877776322211 0 0111111 0001111
Q ss_pred --HHHh---cCCCEEEeChHHHHHHHHcCC------CCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC---CC------
Q 012059 194 --YRIQ---QGVELIVGTPGRLIDLLMKHD------IELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SL------ 253 (472)
Q Consensus 194 --~~~~---~~~~I~i~Tp~~l~~~~~~~~------~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~---~~------ 253 (472)
-.+. ...||+||+|=-|.-.+...+ -.++++.++|+|-+|.++..+ ++.+..++.++ |.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCC
Confidence 1111 247899999988877776321 126788999999999988655 55566677665 11
Q ss_pred ----------------CceEeecccccHHHHHHHhhhcCCcE---EEE-e---CCCCCCccceeEEEEE--e-----cch
Q 012059 254 ----------------PQILMYSATISQEVEKMSSSISKDIV---VVS-V---GKPNMPNKAVKQLAIW--V-----ESN 303 (472)
Q Consensus 254 ----------------~~~i~~SAT~~~~~~~~~~~~~~~~~---~i~-~---~~~~~~~~~~~~~~~~--~-----~~~ 303 (472)
.|+++||+--...+..+....+.+.. ... + +........+.|.+.. + ...
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 26677777655555544443332211 100 0 0000001111111111 1 111
Q ss_pred hHHHHHHHHHH-h-cCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-
Q 012059 304 KKKQKLFDILM-S-KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI- 380 (472)
Q Consensus 304 ~~~~~l~~~l~-~-~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~- 380 (472)
.+.......+. + .......+|||.++.-.--.+.++++ ........+|.-.++..-.++-+.|..|...||+-|.-
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K-~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMK-KEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhh-hhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 22222222222 1 11223468999999999999999998 55677777887777777788889999999999999984
Q ss_pred -ccccCCCCCCcEEEEecCCCCHhHH---HHhhcccccCCC----cceEEEEEcCCChHHHHHHHH
Q 012059 381 -LGRGVELLGVRQVIIFDMPNSIKEY---VHQIGRASQMGD----EGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 381 -~~~Gidi~~~~~VI~~~~p~s~~~~---~Qr~GR~~R~g~----~g~~~~~~~~~~~~~~~~l~~ 438 (472)
.-+-.++.+++.||+|.+|..+.-| +.+.+|+.-.|+ .-.|.++++.-|.-.+..++-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 4567899999999999999987655 566677654442 257889999888766655553
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.31 E-value=4e-11 Score=111.14 Aligned_cols=75 Identities=23% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHhh----HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 93 GYDMPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~----~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
.| .|+|.|.+.+.. +..|+++++.||||+|||+++++|++.++...+.. ..+.+++|.++|..+..|....
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHH
Confidence 45 469999995544 45889999999999999999999998876542110 0234799999999998887777
Q ss_pred HHHH
Q 012059 169 AKLL 172 (472)
Q Consensus 169 ~~~~ 172 (472)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.31 E-value=4e-11 Score=111.14 Aligned_cols=75 Identities=23% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHhh----HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 93 GYDMPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~----~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
.| .|+|.|.+.+.. +..|+++++.||||+|||+++++|++.++...+.. ..+.+++|.++|..+..|....
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHH
Confidence 45 469999995544 45889999999999999999999998876542110 0234799999999998887777
Q ss_pred HHHH
Q 012059 169 AKLL 172 (472)
Q Consensus 169 ~~~~ 172 (472)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.20 E-value=7.5e-10 Score=108.92 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=90.1
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhc-----------------CCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEe
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTT-----------------GMKALSIHGEKPMKERREIMRSFLVG---EVPVIVAT 378 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLvaT 378 (472)
.+.++|||..+....+.+...|.+.. +.....+.|..+..+|++.+++|++. ..-+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 35689999999999998888886211 12234577888899999999999864 23478899
Q ss_pred ccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 379 GILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 379 ~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
....-|||+-..+-+|+||.-|++..-.|.+-|+-|.|+...|+++---.|
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 999999999988899999999999999999999999999888877765444
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.08 E-value=3.5e-09 Score=105.98 Aligned_cols=310 Identities=16% Similarity=0.187 Sum_probs=181.9
Q ss_pred HHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH-HhcCCCCeE
Q 012059 102 MQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL-LGKGLPFKT 180 (472)
Q Consensus 102 ~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~ 180 (472)
...+..+..++-+++.+.||+|||.-+.--+++.++... ...-..+.+.-|++.-+..+.+.+.. -+...+-.+
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-----~g~~~na~v~qprrisaisiaerva~er~e~~g~tv 458 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-----NGASFNAVVSQPRRISAISLAERVANERGEEVGETC 458 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-----ccccccceeccccccchHHHHHHHHHhhHHhhcccc
Confidence 344455557778999999999999988888888776522 12233466777888776665554432 222222111
Q ss_pred EEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC----CCCce
Q 012059 181 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI----SLPQI 256 (472)
Q Consensus 181 ~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~----~~~~~ 256 (472)
+...--.+ .--+..-.|+.||.+.+++++.... ..+.++|+||.|..--. ...+..+++.+ +...+
T Consensus 459 gy~vRf~S-----a~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 459 GYNVRFDS-----ATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred cccccccc-----cccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccc--hHHHHHHHHhhhccchhhhh
Confidence 11110000 0001224599999999999987654 35678999999975322 23333444333 55566
Q ss_pred EeecccccHHHHH--------------------HHhh-hcCCcEEEEeCCC-----------CCCcc-ceeEEEEEe---
Q 012059 257 LMYSATISQEVEK--------------------MSSS-ISKDIVVVSVGKP-----------NMPNK-AVKQLAIWV--- 300 (472)
Q Consensus 257 i~~SAT~~~~~~~--------------------~~~~-~~~~~~~i~~~~~-----------~~~~~-~~~~~~~~~--- 300 (472)
+++|||+..+... +... +......+..... ....+ .-+..-..+
T Consensus 529 ~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 6667765432211 1111 1000000000000 00000 000000000
Q ss_pred ------------cchh----HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh------cCCeEEEEcCCCCHH
Q 012059 301 ------------ESNK----KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT------TGMKALSIHGEKPMK 358 (472)
Q Consensus 301 ------------~~~~----~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~ 358 (472)
.... -.+.++..+. .....+-+++|.+-......|..+|... ..+.+...|+.....
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~-s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~ 687 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIA-SRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ 687 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHHHHHhhhc-ccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH
Confidence 0000 1122222221 2233457999999999888888877632 245677889999888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC------------------CCCHhHHHHhhcccccCCCcce
Q 012059 359 ERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM------------------PNSIKEYVHQIGRASQMGDEGT 420 (472)
Q Consensus 359 ~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~ 420 (472)
++.++.+....|..+++++|.++...+.+-++.+||+.+. -.|.....||.||+||. ++|.
T Consensus 688 eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~ 766 (1282)
T KOG0921|consen 688 EQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGF 766 (1282)
T ss_pred hhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccc
Confidence 8889988888999999999999999999988888876432 12556679999999997 6788
Q ss_pred EEEEEcCC
Q 012059 421 AIVFVNEE 428 (472)
Q Consensus 421 ~~~~~~~~ 428 (472)
|..++...
T Consensus 767 ~f~lcs~a 774 (1282)
T KOG0921|consen 767 CFHLCSRA 774 (1282)
T ss_pred cccccHHH
Confidence 88887643
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=4.1e-09 Score=95.04 Aligned_cols=131 Identities=20% Similarity=0.237 Sum_probs=97.3
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
..|+ .|++.|.-++-.+..|+ ++...||-|||++..+|++...+. |..|-|++.+..||..-++++.
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----------G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ----------GKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT----------SS-EEEEESSHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh----------cCCcEEEeccHHHhhccHHHHH
Confidence 3455 88999999987776665 999999999999988888776654 6679999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHH-HHHHcCC------CCCCCeeEEEEeccchhh
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLI-DLLMKHD------IELDDIRMFVLDEVDCML 236 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~-~~~~~~~------~~~~~~~~iVvDE~h~~~ 236 (472)
.+...+++.+..+.++....+.... -.++|+++|...+. +++..+- .....+.++||||+|.++
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHhhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999998775442222 23689999999884 3443211 114678899999999876
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.91 E-value=1.3e-10 Score=118.12 Aligned_cols=260 Identities=14% Similarity=0.153 Sum_probs=153.0
Q ss_pred CCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 96 MPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
...|.|.+.+.... ...++++.+|||+|||++|.+.++..+.. .++.++++++|-++|+..-...+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~--------~p~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY--------YPGSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc--------CCCccEEEEcCCchhhcccccchhhhcc
Confidence 45567777766655 45789999999999999999998876654 5668899999999998886666665544
Q ss_pred CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHH--cCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-
Q 012059 175 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM--KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI- 251 (472)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~--~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~- 251 (472)
.-+++++-+.|..... ... ....+++|+||+++..... .....+++++.+|+||.|.+.+. +.+.++.+....
T Consensus 999 ~~g~k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMN 1074 (1230)
T ss_pred cCCceeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccc
Confidence 4477888877765543 111 2457999999999988776 34556889999999999987644 233333322222
Q ss_pred -------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEE------ecc-hhHHHHHHHHHHhcC
Q 012059 252 -------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW------VES-NKKKQKLFDILMSKQ 317 (472)
Q Consensus 252 -------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~-~~~~~~l~~~l~~~~ 317 (472)
+..+.+++|.-+. ...+++.|+..... ... .+...+...+.++.- +.. ..........+.. .
T Consensus 1075 ~~s~~t~~~vr~~glsta~~-na~dla~wl~~~~~-~nf-~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~-~ 1150 (1230)
T KOG0952|consen 1075 YISSQTEEPVRYLGLSTALA-NANDLADWLNIKDM-YNF-RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKT-H 1150 (1230)
T ss_pred cCccccCcchhhhhHhhhhh-ccHHHHHHhCCCCc-CCC-CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhc-C
Confidence 2345555553332 24556666654433 111 111111111111111 111 1111223333333 3
Q ss_pred CCCCCEEEEECCchhHHHHHHHHhh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q 012059 318 HFTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVP 373 (472)
Q Consensus 318 ~~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 373 (472)
....|++||+.++.....-+.-|-. ...-+...++. +..+-+.++...+....+
T Consensus 1151 sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1151 SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCCceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccchh
Confidence 4566899999987654433332221 11222334443 355666666666655443
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.83 E-value=5e-08 Score=101.62 Aligned_cols=143 Identities=14% Similarity=0.163 Sum_probs=89.0
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH-----HHh----cCCCCeEEE
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-----LLG----KGLPFKTAL 182 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-----~~~----~~~~~~~~~ 182 (472)
.++.+.++||+|||.+|+-.++..... ....++||+||+.+.-..+...+. ..+ ....+....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~--------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~ 131 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK--------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYV 131 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH--------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEE
Confidence 379999999999999998888765433 345679999999998887776654 111 122234444
Q ss_pred EEcCc-------chHHHHHHHhc-------CCCEEEeChHHHHHHHH-cC---------C-CCC---CCe-eEEEEeccc
Q 012059 183 VVGGD-------AMARQVYRIQQ-------GVELIVGTPGRLIDLLM-KH---------D-IEL---DDI-RMFVLDEVD 233 (472)
Q Consensus 183 ~~~g~-------~~~~~~~~~~~-------~~~I~i~Tp~~l~~~~~-~~---------~-~~~---~~~-~~iVvDE~h 233 (472)
+.++. .....+..... ..+|+|+|.+.|..-.. +. . ..+ ... =.||+||.|
T Consensus 132 ~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh 211 (986)
T PRK15483 132 INAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPH 211 (986)
T ss_pred EecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCC
Confidence 44332 22334333332 36899999998854221 00 0 111 111 269999999
Q ss_pred hhhhcCcHHHHHHHHHhCCCCceEeecccccH
Q 012059 234 CMLQRGFRDQVMQIFRAISLPQILMYSATISQ 265 (472)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~ 265 (472)
++... ...+..+ ..+...-++.+|||.++
T Consensus 212 ~~~~~--~k~~~~i-~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 212 RFPRD--NKFYQAI-EALKPQMIIRFGATFPD 240 (986)
T ss_pred CCCcc--hHHHHHH-HhcCcccEEEEeeecCC
Confidence 98432 2233333 55566667889999976
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.77 E-value=2.7e-07 Score=92.84 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=59.5
Q ss_pred CCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCC--Ccc-----------eEEEEEcCCChHHHHHH
Q 012059 370 GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG--DEG-----------TAIVFVNEENKNLFQEL 436 (472)
Q Consensus 370 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g--~~g-----------~~~~~~~~~~~~~~~~l 436 (472)
...+.+++..++-+|.|-|++-.++-.....|...=.|-+||.-|.. +.| .-.++++..+...+..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 45789999999999999999999999999999999999999998853 223 33467777888777777
Q ss_pred HHHHHHc
Q 012059 437 VDILKSS 443 (472)
Q Consensus 437 ~~~l~~~ 443 (472)
.+-++..
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7665553
No 175
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.73 E-value=5.5e-08 Score=98.96 Aligned_cols=102 Identities=22% Similarity=0.257 Sum_probs=89.6
Q ss_pred CCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC-Cc-EEEEeccccccCCCCCCcEEEEecC
Q 012059 321 PPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE-VP-VIVATGILGRGVELLGVRQVIIFDM 398 (472)
Q Consensus 321 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gidi~~~~~VI~~~~ 398 (472)
++++||+.-...+..+...|. ..+.....+.|.|+...|...+..|.++. .. .+++..+...|+|+..+.+|+..|+
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~-~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~ 618 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLF-FKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDP 618 (674)
T ss_pred CceeeehhHHHHHHHhhhhhh-hcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhch
Confidence 489999999999999988887 77888889999999999999999999653 33 3577889999999999999999999
Q ss_pred CCCHhHHHHhhcccccCCCcceEEE
Q 012059 399 PNSIKEYVHQIGRASQMGDEGTAIV 423 (472)
Q Consensus 399 p~s~~~~~Qr~GR~~R~g~~g~~~~ 423 (472)
-+++..-.|.+-|+.|.|+.-.+.+
T Consensus 619 ~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 619 WWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999998755544
No 176
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.70 E-value=6.2e-05 Score=74.57 Aligned_cols=105 Identities=17% Similarity=0.314 Sum_probs=70.0
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhcC-------CeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEe--ccccccCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTTG-------MKALSIHGEKPMKERREIMRSFL----VGEVPVIVAT--GILGRGVE 386 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLvaT--~~~~~Gid 386 (472)
.+.+++|++|.+....+.+.+. ..| .+...+-..-+ -+.+++.|. .|.-.+|+|. .-+++|||
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~-~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWE-QNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHH-hcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 3679999999999888888876 222 22222222222 344555554 3454577665 47899999
Q ss_pred CCC--CcEEEEecCCCC--------------------------------HhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 387 LLG--VRQVIIFDMPNS--------------------------------IKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 387 i~~--~~~VI~~~~p~s--------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
+.+ ++.||..++|.. +...-|.+|||-|+-++-.++++++..
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 987 789999887762 112369999999997776666666543
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.70 E-value=7.7e-07 Score=92.80 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=53.8
Q ss_pred cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccc
Q 012059 198 QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATI 263 (472)
Q Consensus 198 ~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~ 263 (472)
....|+++||..+..-+..+.+.+..+..|||||||++....-...+..+++.- +..-+.+|||.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 346799999999988888888999999999999999997666566666776655 556678888883
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.57 E-value=1.9e-06 Score=78.10 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=111.4
Q ss_pred cCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh----------cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCC
Q 012059 78 SCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL----------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQ 147 (472)
Q Consensus 78 ~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~----------~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~ 147 (472)
.+.|++.+++. ..+...|.+++-++- ....+++...||.||--...-.++...+.
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------- 89 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------- 89 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------
Confidence 35677766553 245777888876653 23568999999999997655555555443
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC---CCC----
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH---DIE---- 220 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~---~~~---- 220 (472)
...++|++..+..|-....+.++.++.. .+.+..+..-.. . ....-...|+++|+..|...-... ...
T Consensus 90 Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql 164 (303)
T PF13872_consen 90 GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQL 164 (303)
T ss_pred CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHH
Confidence 3457999999999999888999988654 233322221100 0 001123569999999987765321 110
Q ss_pred ---C-CCe-eEEEEeccchhhhcCc--------HHHHHHHHHhCCCCceEeecccccHHHHH
Q 012059 221 ---L-DDI-RMFVLDEVDCMLQRGF--------RDQVMQIFRAISLPQILMYSATISQEVEK 269 (472)
Q Consensus 221 ---~-~~~-~~iVvDE~h~~~~~~~--------~~~~~~i~~~~~~~~~i~~SAT~~~~~~~ 269 (472)
+ .++ .+|||||||...+... ...+..+-..+++.+++..|||...+...
T Consensus 165 ~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 165 VDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRN 226 (303)
T ss_pred HHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCce
Confidence 0 223 4899999999875432 23455566677999999999997654443
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.53 E-value=7e-07 Score=80.94 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=50.4
Q ss_pred CCHHHHHHHhhHhcCCc-EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 97 PTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 97 ~~~~Q~~~i~~~~~~~~-~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
+.+.|.+|+..+++... .+|.||+|+|||.+ +..++..+..... ......+.++|+++|+..-++++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999999988 99999999999964 3344444411000 00124678899999999999988887776
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.49 E-value=5.1e-07 Score=76.78 Aligned_cols=105 Identities=22% Similarity=0.395 Sum_probs=72.4
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cccccCCCCC--CcE
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG--ILGRGVELLG--VRQ 392 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gidi~~--~~~ 392 (472)
.+.+|||++|....+.+.+.+.... ++.+ +.. ...++..+++.|++++-.||+++. .+++|+|+|+ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v--~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPV--FVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE--EES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccccccee--eec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3689999999999999999987332 2332 222 245788899999999999999998 9999999996 788
Q ss_pred EEEecCCCC------------------------------HhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 393 VIIFDMPNS------------------------------IKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 393 VI~~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
||....|.. .....|.+||+-|...+--++++++..
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 999887751 112368899999987765555555554
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.43 E-value=6.3e-06 Score=80.88 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=66.9
Q ss_pred HHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHH
Q 012059 88 NIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 167 (472)
Q Consensus 88 ~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 167 (472)
.+...++.++..-|..|+..+++..-.+|++|+|+|||.+. ..++.++.. ..+..+|+++|+..-++|+++
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~--------~~~~~VLvcApSNiAVDqLae 472 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR--------QHAGPVLVCAPSNIAVDQLAE 472 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHH--------hcCCceEEEcccchhHHHHHH
Confidence 55667888999999999999999999999999999999864 445555554 245669999999999999988
Q ss_pred HHHHHhcCCCCeEEEEE
Q 012059 168 QAKLLGKGLPFKTALVV 184 (472)
Q Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (472)
.+.+.+ ++++-+.
T Consensus 473 KIh~tg----LKVvRl~ 485 (935)
T KOG1802|consen 473 KIHKTG----LKVVRLC 485 (935)
T ss_pred HHHhcC----ceEeeee
Confidence 887753 5554443
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.43 E-value=4.6e-06 Score=72.89 Aligned_cols=152 Identities=23% Similarity=0.347 Sum_probs=94.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh---cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCc
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL---SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 150 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~---~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 150 (472)
..|+....|.+++=.+. .++ -.++.|.+....+. +|+|.+.+.-||.|||.+ ++|++..++. .+..
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA--------dg~~ 71 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA--------DGSR 71 (229)
T ss_pred CCCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc--------CCCc
Confidence 35666666666655443 233 68999999998887 468999999999999996 8899888776 3345
Q ss_pred eEEEEcCCHHHHHHHHHHHHH-HhcCCCCeEEE--EEcCcch----HHHHH----HHhcCCCEEEeChHHHHHHHHcC--
Q 012059 151 LAMVLTPTRELCIQVEEQAKL-LGKGLPFKTAL--VVGGDAM----ARQVY----RIQQGVELIVGTPGRLIDLLMKH-- 217 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~--~~~g~~~----~~~~~----~~~~~~~I~i~Tp~~l~~~~~~~-- 217 (472)
-+-+++| ++|..|....+.. ++.-++-.+.. ..-.... ..... .......|+++||+.+..+....
T Consensus 72 LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 72 LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHH
Confidence 5677777 5788888887764 33222222211 1111111 11111 22345679999999986654211
Q ss_pred -----CC-----------CCCCeeEEEEeccchhhh
Q 012059 218 -----DI-----------ELDDIRMFVLDEVDCMLQ 237 (472)
Q Consensus 218 -----~~-----------~~~~~~~iVvDE~h~~~~ 237 (472)
.. .+.+...=|+||+|..++
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 122334468999998764
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.34 E-value=1.4e-06 Score=76.21 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=69.4
Q ss_pred CCCHHHHHHHhhHhcCC--cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~--~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
++++-|.+++..++... -.++.++.|+|||.+ +..+...+.. .+.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~~--- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA---------AGKRVIGLAPTNKAAKELREKTG--- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhhC---
Confidence 36788999999997443 477889999999984 3444444433 35789999999988876554411
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC----CCCCCCeeEEEEeccchhhhcCcHHHHHHHHH
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH----DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 249 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~----~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~ 249 (472)
..+ .|...++...... ...+...++|||||+-.+. ...+..++.
T Consensus 68 ----~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~ 115 (196)
T PF13604_consen 68 ----IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLR 115 (196)
T ss_dssp ----S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHH
T ss_pred ----cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHH
Confidence 111 1221111111110 0114556799999999774 455667777
Q ss_pred hCC--CCceEeec
Q 012059 250 AIS--LPQILMYS 260 (472)
Q Consensus 250 ~~~--~~~~i~~S 260 (472)
..+ ..+++++-
T Consensus 116 ~~~~~~~klilvG 128 (196)
T PF13604_consen 116 LAKKSGAKLILVG 128 (196)
T ss_dssp HS-T-T-EEEEEE
T ss_pred HHHhcCCEEEEEC
Confidence 663 35566654
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.32 E-value=1.6e-06 Score=75.14 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=69.8
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
-.+..|..++..++...-+++.||.|+|||+.++..++..+.+ +.-.+++++-|..+... .+--+-..
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--------g~~~kiii~Rp~v~~~~----~lGflpG~ 71 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--------GEYDKIIITRPPVEAGE----DLGFLPGD 71 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--------TS-SEEEEEE-S--TT--------SS---
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--------CCCcEEEEEecCCCCcc----ccccCCCC
Confidence 4578899999999988889999999999999888888877765 44567888888765311 11111000
Q ss_pred CCCeEEEE-------EcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 176 LPFKTALV-------VGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 176 ~~~~~~~~-------~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
..-+...+ ............+.....|-+.+.. ++ + +..+. -.+||+|||+.+. ..++..++
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~----~i-R-Grt~~-~~~iIvDEaQN~t----~~~~k~il 140 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLA----FI-R-GRTFD-NAFIIVDEAQNLT----PEELKMIL 140 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGG----GG-T-T--B--SEEEEE-SGGG------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehh----hh-c-Ccccc-ceEEEEecccCCC----HHHHHHHH
Confidence 00000000 0000000111222233445555431 11 1 11233 3799999999874 67788888
Q ss_pred HhCC-CCceEee
Q 012059 249 RAIS-LPQILMY 259 (472)
Q Consensus 249 ~~~~-~~~~i~~ 259 (472)
.++. +.+++++
T Consensus 141 TR~g~~skii~~ 152 (205)
T PF02562_consen 141 TRIGEGSKIIIT 152 (205)
T ss_dssp TTB-TT-EEEEE
T ss_pred cccCCCcEEEEe
Confidence 8884 4555554
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.22 E-value=5.8e-06 Score=79.58 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=67.4
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 192 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (472)
-++|.|.+|||||++++ -++..+. ....+..+++++++..|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~-------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQ-------NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhh-------ccccCCceEEEEecchHHHHHHHHHhhhccc-----------------
Confidence 47899999999999644 3333331 1135677999999999988777766554300
Q ss_pred HHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC-------cHHHHHHHHHh
Q 012059 193 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-------FRDQVMQIFRA 250 (472)
Q Consensus 193 ~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-------~~~~~~~i~~~ 250 (472)
......+..+..+.............+++|||||||++...+ ...++..++..
T Consensus 58 -----~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223334444444333233456789999999999998731 23556666655
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.17 E-value=6.9e-06 Score=80.14 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=50.1
Q ss_pred CCCHHHHHHHhhHhcCC-cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~-~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
.+.+-|++|+......+ -.++.||+|+|||.+.. -++..+.. .+.++||++||..-++.+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tlv-EiI~qlvk---------~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLV-EIISQLVK---------QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHH-HHHHHHHH---------cCCeEEEEcCchHHHHHHHHHh
Confidence 56788999999988774 47889999999998744 44444443 4688999999999888777743
No 187
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.11 E-value=2.7e-05 Score=79.13 Aligned_cols=139 Identities=17% Similarity=0.260 Sum_probs=86.9
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhh---------hc--------ccC---------
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIR---------LH--------HSQ--------- 145 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~---------~~--------~~~--------- 145 (472)
+|++.|..-+..++ ...+.++.+|||+|||++.+-..+.+....+ .. ...
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 78999988877766 5678999999999999876544443332221 00 000
Q ss_pred CC------CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEc----------------------------------
Q 012059 146 NQ------KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVG---------------------------------- 185 (472)
Q Consensus 146 ~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~---------------------------------- 185 (472)
.. ..+++.+-.-|..-..|+.+++++...... ..++-+
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vk--mtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVK--MTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCc--eEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 00 146677777777777888888888754422 221111
Q ss_pred ---------------Cc-chH--------------HHHHHHhcCCCEEEeChHHHHHHHHcCC--CCCCCeeEEEEeccc
Q 012059 186 ---------------GD-AMA--------------RQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVD 233 (472)
Q Consensus 186 ---------------g~-~~~--------------~~~~~~~~~~~I~i~Tp~~l~~~~~~~~--~~~~~~~~iVvDE~h 233 (472)
+. +.+ -..+.+...++|++|-+..|++-..+.. ++++ =..|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccccccc-ccEEEEeccc
Confidence 00 000 0113444567899999999988776655 3332 3589999999
Q ss_pred hhhh
Q 012059 234 CMLQ 237 (472)
Q Consensus 234 ~~~~ 237 (472)
.+-+
T Consensus 258 NiEd 261 (945)
T KOG1132|consen 258 NIED 261 (945)
T ss_pred cHHH
Confidence 8753
No 188
>PRK10536 hypothetical protein; Provisional
Probab=98.10 E-value=5.1e-05 Score=67.78 Aligned_cols=142 Identities=10% Similarity=0.052 Sum_probs=78.5
Q ss_pred CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHH----------
Q 012059 93 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC---------- 162 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~---------- 162 (472)
++.-.+..|...+..+.++..+++.||+|+|||+.++..++..+.. +.-.++++.-|+.+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~--------~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH--------KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc--------CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 4555678899999988888889999999999999766666655543 2234466665664321
Q ss_pred -HHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHH-h-cCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC
Q 012059 163 -IQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRI-Q-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG 239 (472)
Q Consensus 163 -~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~ 239 (472)
+...-++..+...+.. +.+. .....+ . ....|-|... .++.... + +-++||+|||+.+.
T Consensus 128 ~eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt--l-~~~~vIvDEaqn~~--- 189 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT--F-ENAVVILDEAQNVT--- 189 (262)
T ss_pred HHHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecH----HHhcCCc--c-cCCEEEEechhcCC---
Confidence 1122222222211110 0011 111111 1 1233555542 2332222 2 33799999999874
Q ss_pred cHHHHHHHHHhCCCCceEeecc
Q 012059 240 FRDQVMQIFRAISLPQILMYSA 261 (472)
Q Consensus 240 ~~~~~~~i~~~~~~~~~i~~SA 261 (472)
..++..++.++...-.+.+++
T Consensus 190 -~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 -AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred -HHHHHHHHhhcCCCCEEEEeC
Confidence 467778888774443444433
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.09 E-value=3.2e-05 Score=79.73 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHhhHhcC-CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 95 DMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~-~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
..+.+.|.+|+..++.. ..++|.||+|+|||.+. ..++..+.. .+.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46789999999998876 67889999999999753 444444433 355899999999999888777765
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=98.05 E-value=2.1e-05 Score=56.73 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=39.2
Q ss_pred HHhhHhc-CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 104 AIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 104 ~i~~~~~-~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
++...+. ++-++|.+|+|||||.+.+-.+. .+.... ... +.++++++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~-~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIA-ELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHH-HHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334 34466699999999976444333 333210 112 678999999999999877766
No 191
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=3.6e-05 Score=74.96 Aligned_cols=138 Identities=16% Similarity=0.228 Sum_probs=73.6
Q ss_pred EEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCC----CeEEEEEcCcchH-
Q 012059 116 VSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP----FKTALVVGGDAMA- 190 (472)
Q Consensus 116 v~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~----~~~~~~~~g~~~~- 190 (472)
..+.||||||+++.-.++..... +-...|+.|......+... ..+..... +.-...+++....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---------gyr~flffvnq~nilekt~---~nftd~~s~kylf~e~i~~~d~~i~i 69 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---------GYRNFLFFVNQANILEKTK---LNFTDSVSSKYLFSENININDENIEI 69 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---------chhhEEEEecchhHHHHHH---hhcccchhhhHhhhhhhhcCCceeee
Confidence 35789999999866666654422 2234677776555443221 12211100 0001111111100
Q ss_pred ---HHHHHHhcCCCEEEeChHHHHHHHHcCC---C---CCCCee-EEEEeccchhhhc-------------CcHHHHHHH
Q 012059 191 ---RQVYRIQQGVELIVGTPGRLIDLLMKHD---I---ELDDIR-MFVLDEVDCMLQR-------------GFRDQVMQI 247 (472)
Q Consensus 191 ---~~~~~~~~~~~I~i~Tp~~l~~~~~~~~---~---~~~~~~-~iVvDE~h~~~~~-------------~~~~~~~~i 247 (472)
........+..|+++|.+.|...+.+.. . ++.+.. +++-||||++... ++...+..-
T Consensus 70 kkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la 149 (812)
T COG3421 70 KKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA 149 (812)
T ss_pred eeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH
Confidence 0001122346799999999977766432 2 233444 4577999998642 134444444
Q ss_pred HHhCCCCceEeecccccH
Q 012059 248 FRAISLPQILMYSATISQ 265 (472)
Q Consensus 248 ~~~~~~~~~i~~SAT~~~ 265 (472)
+...+..-++.+|||.+.
T Consensus 150 ~~~nkd~~~lef~at~~k 167 (812)
T COG3421 150 LEQNKDNLLLEFSATIPK 167 (812)
T ss_pred HhcCCCceeehhhhcCCc
Confidence 444466778889999984
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.03 E-value=5.8e-05 Score=76.99 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=83.4
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 177 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 177 (472)
.++|+.|+-..+.++-++|.+++|+|||.+ +..++..+... ......++++++||..-|..+.+.+......++
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~-----~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQL-----ADGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHh-----cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 589999999999999999999999999985 33333333321 112345788999999998888777665443322
Q ss_pred CeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHH------cCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 178 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM------KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~------~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
+. + ........-..|-.+|+.... .+..+.-.+++|||||+-++- ...+..++..+
T Consensus 228 ~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al 289 (615)
T PRK10875 228 LT-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDAL 289 (615)
T ss_pred cc-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhc
Confidence 10 0 000111112233333332211 111233457899999999663 45556677777
Q ss_pred -CCCceEeec
Q 012059 252 -SLPQILMYS 260 (472)
Q Consensus 252 -~~~~~i~~S 260 (472)
+..++|++.
T Consensus 290 ~~~~rlIlvG 299 (615)
T PRK10875 290 PPHARVIFLG 299 (615)
T ss_pred ccCCEEEEec
Confidence 445666654
No 193
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.02 E-value=3.2e-07 Score=92.42 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEecc
Q 012059 304 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV---GEVPVIVATGI 380 (472)
Q Consensus 304 ~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vLvaT~~ 380 (472)
.+...|...+......+++++||..-....+.+..++. ..+ ....+.|.....+|+..++.|+. .+...|++|.+
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~-~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLT-YEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHh-ccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 34556666666677788899999999999999999998 556 88889999999999999999983 35668899998
Q ss_pred cccc
Q 012059 381 LGRG 384 (472)
Q Consensus 381 ~~~G 384 (472)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 7655
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.00 E-value=8.5e-05 Score=75.64 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=83.6
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 177 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 177 (472)
.++|+.|+..++.++-++|.|++|+|||++ +..++..+..... ...+.++++++||-.-|..+.+.+......++
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~----~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP----KQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc----ccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 379999999999999999999999999985 3334443332110 01135799999999888877776655433222
Q ss_pred CeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHH------cCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 178 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM------KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~------~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
.. .. ......+-..|..+++.... .+..+...+++|||||+-++. ...+..++..+
T Consensus 222 ~~----------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al 283 (586)
T TIGR01447 222 AA----------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKAL 283 (586)
T ss_pred cc----------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhc
Confidence 10 00 00111122334444432211 111223468999999999663 45566677777
Q ss_pred -CCCceEeec
Q 012059 252 -SLPQILMYS 260 (472)
Q Consensus 252 -~~~~~i~~S 260 (472)
+..++|++.
T Consensus 284 ~~~~rlIlvG 293 (586)
T TIGR01447 284 PPNTKLILLG 293 (586)
T ss_pred CCCCEEEEEC
Confidence 455666653
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.85 E-value=0.00023 Score=74.66 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 166 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 166 (472)
.++ .+++.|.+|+..+..++-+++.+++|+|||.+ +-.++..+... +....+++++||-.-|..+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-------~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-------GGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-------CCCceEEEEeCchHHHHHHH
Confidence 344 78999999999999888999999999999984 33333333220 11256888999988776443
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.80 E-value=0.00047 Score=72.68 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=72.9
Q ss_pred CCCHHHHHHHhhHhc-CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 96 MPTPVQMQAIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~-~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
.+++-|.+|+..++. ++-++|.+++|+|||.+ +-.+.. +.. ..+..+++++||-..+..+.+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~-~~~--------~~g~~V~~~ApTg~Aa~~L~~------- 414 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAARE-AWE--------AAGYRVIGAALSGKAAEGLQA------- 414 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHH-HHH--------hCCCeEEEEeCcHHHHHHHHh-------
Confidence 689999999999886 46689999999999974 333333 332 236779999999777664432
Q ss_pred CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--C
Q 012059 175 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S 252 (472)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~ 252 (472)
..+.... |-.++..........+...++|||||+-.+... .+..++... .
T Consensus 415 ~~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~ 466 (744)
T TIGR02768 415 ESGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEA 466 (744)
T ss_pred ccCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhc
Confidence 1222111 222221111222233567889999999977533 334444432 3
Q ss_pred CCceEeec
Q 012059 253 LPQILMYS 260 (472)
Q Consensus 253 ~~~~i~~S 260 (472)
..++|++.
T Consensus 467 ~~kliLVG 474 (744)
T TIGR02768 467 GAKVVLVG 474 (744)
T ss_pred CCEEEEEC
Confidence 55566654
No 197
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.79 E-value=0.00023 Score=58.28 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=54.7
Q ss_pred EcCCCCHHHHHHHHHHHhcCC-CcEEEEeccccccCCCCC--CcEEEEecCCCC--------------------------
Q 012059 351 IHGEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELLG--VRQVIIFDMPNS-------------------------- 401 (472)
Q Consensus 351 ~~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~--~~~VI~~~~p~s-------------------------- 401 (472)
+.-+.+..+...+++.|++.. ..||++|..+++|+|+|+ ++.||....|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 344455556788999998654 379999988999999997 678888776641
Q ss_pred -----HhHHHHhhcccccCCCcceEEEEEcC
Q 012059 402 -----IKEYVHQIGRASQMGDEGTAIVFVNE 427 (472)
Q Consensus 402 -----~~~~~Qr~GR~~R~g~~g~~~~~~~~ 427 (472)
.....|.+||+-|...+--++++++.
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12346889999998765334454443
No 198
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.72 E-value=0.00064 Score=72.86 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=76.3
Q ss_pred CCCCCCCHHHHHHHhhHhcCC-cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~-~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.|+ .+++-|.+++..+++++ -++|.++.|+|||++ +-.+.. +.. ..+.+++.++||-..+..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~-~~e--------~~G~~V~~~ApTGkAA~~L~e--- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVARE-AWE--------AAGYEVRGAALSGIAAENLEG--- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHH-HHH--------HcCCeEEEecCcHHHHHHHhh---
Confidence 344 68999999999999765 478999999999984 333333 322 246779999999776654322
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHh
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~ 250 (472)
..++.. .|..+|..-.......+...++|||||+-.+.. ..+..++..
T Consensus 409 ----~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~ 456 (988)
T PRK13889 409 ----GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSH 456 (988)
T ss_pred ----ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHh
Confidence 122111 122222211112223456678999999997753 344455554
Q ss_pred C--CCCceEeeccc
Q 012059 251 I--SLPQILMYSAT 262 (472)
Q Consensus 251 ~--~~~~~i~~SAT 262 (472)
. ...++|++.-+
T Consensus 457 a~~~garvVLVGD~ 470 (988)
T PRK13889 457 AADAGAKVVLVGDP 470 (988)
T ss_pred hhhCCCEEEEECCH
Confidence 3 45566666443
No 199
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.69 E-value=0.00072 Score=65.06 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 167 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 167 (472)
+.|...+|-|.+-.-.+. .+.+.++.+|+|+|||.+.+..++.+-+..+ ....+.++..-|..-.+....
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p------~~~~KliYCSRTvpEieK~l~ 85 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP------DEHRKLIYCSRTVPEIEKALE 85 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC------cccceEEEecCcchHHHHHHH
Confidence 356677888877665544 6778999999999999976555555443321 234567777766655554555
Q ss_pred HHHHH
Q 012059 168 QAKLL 172 (472)
Q Consensus 168 ~~~~~ 172 (472)
+++.+
T Consensus 86 El~~l 90 (755)
T KOG1131|consen 86 ELKRL 90 (755)
T ss_pred HHHHH
Confidence 55443
No 200
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.68 E-value=0.0003 Score=57.78 Aligned_cols=70 Identities=20% Similarity=0.421 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCC---cEEEEecc--ccccCCCCC--CcEEEEecCCCC-----------------------------
Q 012059 358 KERREIMRSFLVGEV---PVIVATGI--LGRGVELLG--VRQVIIFDMPNS----------------------------- 401 (472)
Q Consensus 358 ~~r~~~~~~f~~g~~---~vLvaT~~--~~~Gidi~~--~~~VI~~~~p~s----------------------------- 401 (472)
.+...+++.|++..- .||+++.- +++|||+|+ ++.||..+.|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345678888886543 58988876 999999997 688998776641
Q ss_pred --HhHHHHhhcccccCCCcceEEEEEcC
Q 012059 402 --IKEYVHQIGRASQMGDEGTAIVFVNE 427 (472)
Q Consensus 402 --~~~~~Qr~GR~~R~g~~g~~~~~~~~ 427 (472)
.....|.+||+-|...+--++++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 12247899999998765445555543
No 201
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.67 E-value=0.00017 Score=76.18 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=97.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhh--------hcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEE
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIR--------LHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTA 181 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~--------~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 181 (472)
.|+.+++.-.+|+|||..-+...+..+-... ........-+..|||+|. ++..||.+++.+..... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 4567899999999999875554443211100 000011123569999996 56688999999987654 5666
Q ss_pred EEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC--------------C----CCCe--eEEEEeccchhhhcCcH
Q 012059 182 LVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI--------------E----LDDI--RMFVLDEVDCMLQRGFR 241 (472)
Q Consensus 182 ~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~--------------~----~~~~--~~iVvDE~h~~~~~~~~ 241 (472)
.+.|-...........-.+|||++||..|..-+..... . +-.+ =-|++|||+.+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 65553221111111223589999999999776643210 0 0011 1289999997643 46
Q ss_pred HHHHHHHHhCCCCceEeecccccHHH
Q 012059 242 DQVMQIFRAISLPQILMYSATISQEV 267 (472)
Q Consensus 242 ~~~~~i~~~~~~~~~i~~SAT~~~~~ 267 (472)
....+...+++.....++|+|+-..+
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhhh
Confidence 78888889999999999999965443
No 202
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.55 E-value=0.00012 Score=65.86 Aligned_cols=51 Identities=27% Similarity=0.452 Sum_probs=39.7
Q ss_pred CCCCcccCcccCCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 68 AVPAPILSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 68 ~~p~~~~~~~~~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
.+|..+.+|+++++|+-+.+.+.. .|. ++|.+|||||||++ +..++.++..
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 678889999999999888774321 233 99999999999985 6777777654
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.53 E-value=0.00026 Score=67.16 Aligned_cols=123 Identities=23% Similarity=0.174 Sum_probs=74.5
Q ss_pred CCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC
Q 012059 97 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 176 (472)
Q Consensus 97 ~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 176 (472)
+++-|.+++.. ..++++|.|+.|||||.+.+.-++..+...+ ....++|++++|+..+..+.+.+.......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 46789999988 6788999999999999976555554444311 235669999999999999988888764321
Q ss_pred CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc-CCCCC-CCeeEEEEeccc
Q 012059 177 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIEL-DDIRMFVLDEVD 233 (472)
Q Consensus 177 ~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~-~~~~~-~~~~~iVvDE~h 233 (472)
... ................+.|+|...+...+.+ ..... -.-.+-++|+..
T Consensus 73 ~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 73 QQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 100 0000011122223467899999888654433 11111 112356777766
No 204
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.53 E-value=0.0005 Score=62.39 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=65.8
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCC--------CcEEEEecCCCCHhHHHHhhcccccCCCc-ceEEEEEcC---CC
Q 012059 362 EIMRSFLVGEVPVIVATGILGRGVELLG--------VRQVIIFDMPNSIKEYVHQIGRASQMGDE-GTAIVFVNE---EN 429 (472)
Q Consensus 362 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~--------~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~-g~~~~~~~~---~~ 429 (472)
...+.|.+|+..|+|.+++++.||.+.+ -++-|...+||+.+..+|.+||+.|.|+. .-.|.++.. .+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998864 35677899999999999999999999974 333444332 26
Q ss_pred hHHHHHHHHHHHHcCCC
Q 012059 430 KNLFQELVDILKSSGAG 446 (472)
Q Consensus 430 ~~~~~~l~~~l~~~~~~ 446 (472)
.+....+.+-|+..+.-
T Consensus 132 ~Rfas~va~rL~sLgAl 148 (278)
T PF13871_consen 132 RRFASTVARRLESLGAL 148 (278)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 66777777777765543
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.40 E-value=0.0028 Score=68.50 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhc-CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~-~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
+++..++.....++ .+++-|.+++..+.. ++-.+|.|+.|+|||++ +-++... .. ..+.+++.++||-
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~-~e--------~~G~~V~g~ApTg 435 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREA-WE--------AAGYRVVGGALAG 435 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHH-HH--------HcCCeEEEEcCcH
Confidence 33444443333333 689999999998864 55689999999999984 3344333 22 2467899999997
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC
Q 012059 160 ELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG 239 (472)
Q Consensus 160 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~ 239 (472)
.-+..+.+ ..++... |..+|+.........+..-++|||||+..+.
T Consensus 436 kAA~~L~e-------~~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~--- 481 (1102)
T PRK13826 436 KAAEGLEK-------EAGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA--- 481 (1102)
T ss_pred HHHHHHHH-------hhCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC---
Confidence 76654432 1222221 2222211111122345567799999999764
Q ss_pred cHHHHHHHHHhC--CCCceEeeccc
Q 012059 240 FRDQVMQIFRAI--SLPQILMYSAT 262 (472)
Q Consensus 240 ~~~~~~~i~~~~--~~~~~i~~SAT 262 (472)
...+..++... ...++|++.-+
T Consensus 482 -~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 482 -SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -HHHHHHHHHHHHhcCCEEEEECCH
Confidence 34455555555 34666666543
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.39 E-value=0.0004 Score=60.46 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=23.6
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
-.++.+|+|+|||+.++ -++.++.. .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l-~~~~~~~~---------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELL-QRAYNYEE---------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHH-HHHHHHHH---------cCCeEEEEec
Confidence 46889999999998543 34443332 3567888866
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0032 Score=60.73 Aligned_cols=129 Identities=15% Similarity=0.140 Sum_probs=69.1
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
+.+++.+|||+|||++..-.+...... ....+.++.++. +.|.-+. ++++.++..+++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~------~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGIN------SDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh------hccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe-------
Confidence 468899999999998754333222111 001234455544 3334333 2355555544543322
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC-cHHHHHHHHHhCC-C-CceEeeccccc-H
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAIS-L-PQILMYSATIS-Q 265 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~~-~-~~~i~~SAT~~-~ 265 (472)
+-+++.+...+.. +.++++|++|++.+..... ....+..++.... . ..++.+|||.. +
T Consensus 239 --------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 --------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred --------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1134444444432 3568899999999874221 1234444555442 2 46788999985 3
Q ss_pred HHHHHHhhh
Q 012059 266 EVEKMSSSI 274 (472)
Q Consensus 266 ~~~~~~~~~ 274 (472)
.+.+....+
T Consensus 301 ~~~~~~~~~ 309 (388)
T PRK12723 301 DVKEIFHQF 309 (388)
T ss_pred HHHHHHHHh
Confidence 444444444
No 208
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.39 E-value=0.001 Score=68.85 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=84.5
Q ss_pred ccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCc-EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEE
Q 012059 77 SSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 155 (472)
Q Consensus 77 ~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~-~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil 155 (472)
....+.+.+..- -+..++.-|++|+-.++..+| .+|.|=+|+|||.+.... +..|.. .++++|+.
T Consensus 654 ~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~---------~gkkVLLt 719 (1100)
T KOG1805|consen 654 LSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA---------LGKKVLLT 719 (1100)
T ss_pred cccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH---------cCCeEEEE
Confidence 334455555442 233678889999999886655 788899999999853332 332322 47789999
Q ss_pred cCCHHHHHHHHHHHHHHhcCC---C--------CeEEEEEcCc--chHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCC
Q 012059 156 TPTRELCIQVEEQAKLLGKGL---P--------FKTALVVGGD--AMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELD 222 (472)
Q Consensus 156 ~Pt~~L~~q~~~~~~~~~~~~---~--------~~~~~~~~g~--~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~ 222 (472)
+=|..-++.+.-.++.+.-.+ | +.-.+...+. ..............||.||---+.+.+. ...
T Consensus 720 syThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R 795 (1100)
T KOG1805|consen 720 SYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNR 795 (1100)
T ss_pred ehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hcc
Confidence 998888776666555543210 0 0001111111 1122223334557788888433332222 334
Q ss_pred CeeEEEEeccchhhhc
Q 012059 223 DIRMFVLDEVDCMLQR 238 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~ 238 (472)
.+++.|+|||-.+..+
T Consensus 796 ~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 796 QFDYCIIDEASQILLP 811 (1100)
T ss_pred ccCEEEEccccccccc
Confidence 5999999999987643
No 209
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.35 E-value=0.035 Score=64.78 Aligned_cols=237 Identities=10% Similarity=0.130 Sum_probs=125.5
Q ss_pred CCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.+++-|.+++..++.. +-.+|.++.|+|||.+ +-.+.. +.+ ..+..+++++||..-+..+.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~-~~~--------~~G~~V~~lAPTgrAA~~L~e~~g~~A 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLH-LAS--------EQGYEIQIITAGSLSAQELRQKIPRLA 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHH-HHH--------hcCCeEEEEeCCHHHHHHHHHHhcchh
Confidence 5788999999998865 5688999999999974 333333 333 346789999999877665554322111
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-- 251 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-- 251 (472)
. ........+.. ..-..|...+. .....+..-++|||||+-.+. ...+..++...
T Consensus 499 ~-------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~ 555 (1960)
T TIGR02760 499 S-------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQ 555 (1960)
T ss_pred h-------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhh
Confidence 0 00011111111 01112222232 122334567899999999774 44555666544
Q ss_pred CCCceEeecccc-------cHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEE
Q 012059 252 SLPQILMYSATI-------SQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAV 324 (472)
Q Consensus 252 ~~~~~i~~SAT~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 324 (472)
...++|++.-+- .+.+..+.. ...... ...........+ .............+.............++
T Consensus 556 ~garvVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~--~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 556 HNSKLILLNDSAQRQGMSAGSAIDLLKE-GGVTTY--AWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred cCCEEEEEcChhhcCccccchHHHHHHH-CCCcEE--EeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 567788775441 122332222 211111 111111111111 11111222333445555545444445699
Q ss_pred EEECCchhHHHHHHHHhhhc---C------CeEEEEc-CCCCHHHHHHHHHHHhcCC
Q 012059 325 VYVGSRLGADLLSNAISVTT---G------MKALSIH-GEKPMKERREIMRSFLVGE 371 (472)
Q Consensus 325 If~~~~~~~~~l~~~L~~~~---~------~~~~~~~-~~~~~~~r~~~~~~f~~g~ 371 (472)
|+..+......|...++..+ | .....+. -+++..++... ..|+.|.
T Consensus 631 iv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred EEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 99999888888877776432 2 2223333 35666666633 5666553
No 210
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.31 E-value=0.0011 Score=53.74 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=12.5
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
+++.++|.|++|+|||.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3456899999999999853
No 211
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.30 E-value=0.0026 Score=58.99 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=82.8
Q ss_pred HCCCCCCCHHHHHHHhhHhcCC--cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH---
Q 012059 91 AAGYDMPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV--- 165 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~--~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~--- 165 (472)
..|+.-....|.-|+..++... =+.+.++-|||||+.++.+.+...+..+ .-.+++|.=|+..+.+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-------~y~KiiVtRp~vpvG~dIGfL 295 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-------RYRKIIVTRPTVPVGEDIGFL 295 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-------hhceEEEecCCcCcccccCcC
Confidence 4578777889999999998553 4788999999999988888887766532 334577766776553211
Q ss_pred ----HHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCC----------eeEEEEec
Q 012059 166 ----EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD----------IRMFVLDE 231 (472)
Q Consensus 166 ----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~----------~~~iVvDE 231 (472)
.+.+.-|. ....+....+.+.. =++.+.+...+.+..+.+.. =.+||+||
T Consensus 296 PG~eEeKm~PWm-------------q~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDE 359 (436)
T COG1875 296 PGTEEEKMGPWM-------------QAIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDE 359 (436)
T ss_pred CCchhhhccchH-------------HHHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEeh
Confidence 00000000 00111111111111 11233344444333322221 24799999
Q ss_pred cchhhhcCcHHHHHHHHHhC-CCCceEeec
Q 012059 232 VDCMLQRGFRDQVMQIFRAI-SLPQILMYS 260 (472)
Q Consensus 232 ~h~~~~~~~~~~~~~i~~~~-~~~~~i~~S 260 (472)
|+.+. ..++..++.+. +..+++++.
T Consensus 360 aQNLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 360 AQNLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred hhccC----HHHHHHHHHhccCCCEEEEcC
Confidence 99884 67888898888 555665553
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.23 E-value=0.0042 Score=51.17 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999973
No 213
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=97.17 E-value=0.00052 Score=75.64 Aligned_cols=95 Identities=25% Similarity=0.460 Sum_probs=80.9
Q ss_pred CEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 012059 322 PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP-----------MKERREIMRSFLVGEVPVIVATGILGRGVELLGV 390 (472)
Q Consensus 322 ~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 390 (472)
..++|++.+..+..+...++....+.+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 36899999999999888888555555555666443 2347789999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHhhcccccCC
Q 012059 391 RQVIIFDMPNSIKEYVHQIGRASQMG 416 (472)
Q Consensus 391 ~~VI~~~~p~s~~~~~Qr~GR~~R~g 416 (472)
+.|+.++.|.....|+|+.||+.+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998765
No 214
>PRK06526 transposase; Provisional
Probab=97.17 E-value=0.0019 Score=58.74 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.7
Q ss_pred hHhcCCcEEEEccCCCCcchhhH
Q 012059 107 SALSGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 107 ~~~~~~~~iv~a~TGsGKT~~~~ 129 (472)
.+..++++++.||+|+|||..+.
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHH
Confidence 34467899999999999997543
No 215
>PHA02533 17 large terminase protein; Provisional
Probab=97.17 E-value=0.0022 Score=64.73 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=74.8
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|.|+|.+.+..+..++-.++..+-..|||.+....++..+.. ..+..+++++|+..-|..+.+.++.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~--------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF--------NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh--------CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 6789999999887666667888889999998766444433332 23568999999999999888888766544
Q ss_pred CCC-eEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 176 LPF-KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 176 ~~~-~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
.+. ....+... . .....+.++..|.+.|.+ .....-.+.+++|+||+|.+.
T Consensus 131 ~P~l~~~~i~~~-~--~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 131 LPDFLQPGIVEW-N--KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred CHHHhhcceeec-C--ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCC
Confidence 331 00000000 0 000112344555444421 111122346789999999764
No 216
>PRK08181 transposase; Validated
Probab=97.16 E-value=0.0069 Score=55.48 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=21.7
Q ss_pred CHHHHHHHh----hHhcCCcEEEEccCCCCcchh
Q 012059 98 TPVQMQAIP----SALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 98 ~~~Q~~~i~----~~~~~~~~iv~a~TGsGKT~~ 127 (472)
...|..++. .+..++++++.||+|+|||..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHH
Confidence 344554442 334778999999999999974
No 217
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0039 Score=59.63 Aligned_cols=131 Identities=22% Similarity=0.250 Sum_probs=63.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|+.+++.+|||+|||++....+...+.. ....++.++. +...-.--.+.++.+++..++.+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~--------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~------ 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR--------FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAV------ 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEec------
Confidence 35679999999999998654433332222 1113444444 22211112234444444444333222
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC-cHHHHHHHHHhC-CCCceEeecccccHH-
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI-SLPQILMYSATISQE- 266 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~-~~~~~i~~SAT~~~~- 266 (472)
.+++.+...+. .+.+.++|+||++-+..... ....+..+.... +...++.+|||....
T Consensus 201 ---------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 201 ---------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred ---------------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 23333333332 23456889999997542111 122222221111 234578889997543
Q ss_pred HHHHHhhh
Q 012059 267 VEKMSSSI 274 (472)
Q Consensus 267 ~~~~~~~~ 274 (472)
+.+..+.|
T Consensus 262 l~evi~~f 269 (374)
T PRK14722 262 LNEVVQAY 269 (374)
T ss_pred HHHHHHHH
Confidence 34444443
No 218
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.11 E-value=0.0017 Score=65.24 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=85.7
Q ss_pred HHHHHHHhhHh-----cC----CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 99 PVQMQAIPSAL-----SG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 99 ~~Q~~~i~~~~-----~~----~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
|||.-.+-.++ .| +.+++.-|-|-|||......++..+.- ....+..++++++++.-|..+++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~------~g~~~~~i~~~A~~~~QA~~~f~~~ 74 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL------DGEPGAEIYCAANTRDQAKIVFDEA 74 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc------CCccCceEEEEeCCHHHHHHHHHHH
Confidence 67887777766 22 348888899999997544444444432 1245678999999999999999999
Q ss_pred HHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc--CCCCCCCeeEEEEeccchhhhcCcHHHHHHH
Q 012059 170 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--HDIELDDIRMFVLDEVDCMLQRGFRDQVMQI 247 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~--~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i 247 (472)
..+....+........ ..... ....|.....+.+...+.. ....-.+.+++|+||+|.+.+......+..-
T Consensus 75 ~~~i~~~~~l~~~~~~------~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g 147 (477)
T PF03354_consen 75 KKMIEASPELRKRKKP------KIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESG 147 (477)
T ss_pred HHHHHhChhhccchhh------hhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhh
Confidence 8887653311100000 00000 0112222211222111212 2222335789999999998654445555555
Q ss_pred HHhCCCCceEeec
Q 012059 248 FRAISLPQILMYS 260 (472)
Q Consensus 248 ~~~~~~~~~i~~S 260 (472)
....++++++.+|
T Consensus 148 ~~~r~~pl~~~IS 160 (477)
T PF03354_consen 148 MGARPNPLIIIIS 160 (477)
T ss_pred hccCCCceEEEEe
Confidence 5555777777664
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.07 E-value=0.0017 Score=53.14 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
++.+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567999999999999853
No 220
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.00 E-value=0.0028 Score=56.86 Aligned_cols=87 Identities=23% Similarity=0.331 Sum_probs=64.8
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCc-chHHHHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 147 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGD-AMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 147 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
.+.|.+|||+.+-.-|..+.+.++.+... +..++-+..-. ...++...+.. ..+|.||||+++..+++.+.+.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 45788999999877777788877777311 12233333332 45566666664 58999999999999999999999999
Q ss_pred eEEEEeccch
Q 012059 225 RMFVLDEVDC 234 (472)
Q Consensus 225 ~~iVvDE~h~ 234 (472)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998764
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=96.95 E-value=0.0068 Score=57.32 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=34.5
Q ss_pred CeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhh
Q 012059 223 DIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI 274 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~ 274 (472)
++++|++|.+.++.. ......+..+.... +...++.++||..++....++.+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 467999999998752 23445555555544 55567788888776665555554
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.95 E-value=0.01 Score=54.50 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=27.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
.+.++++.|++|+|||.. +.++...+.. ..+..++++. ..++..
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~--------~~g~~v~y~~-~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMR--------KKGVPVLYFP-FVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhh--------hcCceEEEEE-HHHHHH
Confidence 357899999999999973 3444444433 1145566655 344433
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.023 Score=51.29 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=28.8
Q ss_pred CCCeeEEEEeccchhhhcCcHH-HHHHHHHhC--CCCceEeecccccHHHH
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRD-QVMQIFRAI--SLPQILMYSATISQEVE 268 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~-~~~~i~~~~--~~~~~i~~SAT~~~~~~ 268 (472)
+..++++||||++......+.. .+..++... ....++..|.--+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 3467899999999875443332 344455443 35667776665554443
No 224
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.87 E-value=0.0042 Score=60.05 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=43.9
Q ss_pred CCHHHHHHHhhH------hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 97 PTPVQMQAIPSA------LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 97 ~~~~Q~~~i~~~------~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
+++-|++++..+ ..+.+++|.|+-|+|||. ++-.+..... ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~--------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLR--------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhc--------cccceEEEecchHHHHHhc
Confidence 567799998888 578899999999999997 4444333332 2467799999997766544
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.022 Score=54.46 Aligned_cols=128 Identities=14% Similarity=0.179 Sum_probs=67.0
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCH-HHHHHHHHHHHHHhcCCCCeEEEEEcCcc
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTR-ELCIQVEEQAKLLGKGLPFKTALVVGGDA 188 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~-~L~~q~~~~~~~~~~~~~~~~~~~~~g~~ 188 (472)
+.+.+.||||+|||+.....+. .+.. .+.++.++. |.| ..+.|+. .++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~---------~GkkVglI~aDt~RiaAvEQLk----~yae~lgipv-------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG---------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEV-------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH---------cCCcEEEEecCCcchHHHHHHH----HHhhhcCCcE--------
Confidence 5688999999999986443332 2222 244455544 333 2333333 3332222222
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC-cHHHHHHHHHhC-CCCceEeeccccc-H
Q 012059 189 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI-SLPQILMYSATIS-Q 265 (472)
Q Consensus 189 ~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~-~~~~~i~~SAT~~-~ 265 (472)
+...+|..+.+.+..... ..++++|++|-+-+..... ....+..++... +...++.+|||.. +
T Consensus 300 -------------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 300 -------------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred -------------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 113356666555543211 1247899999997754221 223344444433 3344566888754 4
Q ss_pred HHHHHHhhhc
Q 012059 266 EVEKMSSSIS 275 (472)
Q Consensus 266 ~~~~~~~~~~ 275 (472)
++...++.|.
T Consensus 366 d~~~i~~~F~ 375 (436)
T PRK11889 366 DMIEIITNFK 375 (436)
T ss_pred HHHHHHHHhc
Confidence 5566666553
No 226
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.83 E-value=0.011 Score=61.61 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
..+++-|.+|+-. ...+++|.|..|||||.+.. .-+.+++.. ....+..+|+++.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~-~r~ayLl~~-----~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLV-ARAGWLLAR-----GQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHH-HHHHHHHHh-----CCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 3689999999864 34578999999999999744 333444431 11235679999999999998888776654
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.76 E-value=0.0034 Score=54.77 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=29.4
Q ss_pred CCeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHH
Q 012059 222 DDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEK 269 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~ 269 (472)
+++++|++|-+.+... ......+..++... +..-.+.+|||.......
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 3477899999876432 22345555666665 445677889998754433
No 228
>PRK08116 hypothetical protein; Validated
Probab=96.70 E-value=0.015 Score=53.58 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCeeEEEEeccchh--hhcCcHHHHHHHHHhC--CCCceEeecccccHHHH
Q 012059 222 DDIRMFVLDEVDCM--LQRGFRDQVMQIFRAI--SLPQILMYSATISQEVE 268 (472)
Q Consensus 222 ~~~~~iVvDE~h~~--~~~~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~ 268 (472)
.+.+++|+||++.. .++ ....+..++... ...++|+.|...+.++.
T Consensus 177 ~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 177 VNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred cCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 45679999999642 222 234455555544 44567777766665544
No 229
>PF13173 AAA_14: AAA domain
Probab=96.68 E-value=0.031 Score=45.12 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=27.0
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccccc
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
.-.+|++||+|.+- ++...+..+....++.++++.+....
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhccCceEEEEccchH
Confidence 45589999999984 45677777776655556665554433
No 230
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.0058 Score=57.59 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.8
Q ss_pred eEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccccc
Q 012059 225 RMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 225 ~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
.++++||+|++. ..+-..++..+.+-.++++.||--
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhhcCCeEEEEeccCC
Confidence 379999999985 445556677778888999999843
No 231
>PRK12377 putative replication protein; Provisional
Probab=96.65 E-value=0.026 Score=51.08 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
..++++.||+|+|||.. +.++...+.. .+..+++ ++..+|..++
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~---------~g~~v~~-i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA---------KGRSVIV-VTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH---------cCCCeEE-EEHHHHHHHH
Confidence 36799999999999974 3444444433 2344544 4445565543
No 232
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.65 E-value=0.011 Score=54.89 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=26.5
Q ss_pred HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 108 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
+..|.-+++.|++|+|||...+. +...+.. ..+..++++.-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~-~~~~~~~--------~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLRE-YALDLIT--------QHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHH-HHHHHHH--------hcCceEEEEEc
Confidence 44677899999999999984333 3333222 22566888763
No 233
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.63 E-value=0.01 Score=63.04 Aligned_cols=72 Identities=25% Similarity=0.218 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
..+++-|.+++.. ...+++|.|..|||||.+... =+.+++.. ..-...++|+++.|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~-Ria~Li~~-----~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTH-RIAWLLSV-----ENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHc-----CCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3588999999865 346899999999999987443 33444431 112345799999999999999888888753
No 234
>PRK08727 hypothetical protein; Validated
Probab=96.60 E-value=0.018 Score=51.90 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=25.1
Q ss_pred CeeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHH
Q 012059 223 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEV 267 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~ 267 (472)
+.++||+||+|.+.... ....+..++... ...++|+.|...|...
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 45689999999886432 223333444433 2334555555555544
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.57 E-value=0.022 Score=56.86 Aligned_cols=47 Identities=15% Similarity=0.380 Sum_probs=27.3
Q ss_pred CeeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHHHH
Q 012059 223 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEK 269 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~ 269 (472)
.++++++||+|.+.... ....+..++..+ ...++++.|...|..+..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 46699999999875432 233444555444 344555555555555443
No 236
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.56 E-value=0.02 Score=64.26 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
.+++-|.+|+..++.. +-++|.+..|+|||.+. -.++..+... ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l-----~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML-----PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH-----hhccCceEEEEechHHHHHHH
Confidence 6899999999999954 67999999999999852 2222221110 012456788999998776654
No 237
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.54 E-value=0.012 Score=53.54 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeeccccc
Q 012059 218 DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATIS 264 (472)
Q Consensus 218 ~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~ 264 (472)
....+.++.||+||||.|.... +..+.+.+... ...++++.+.-+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3356678999999999997554 44455555554 5566777766543
No 238
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.52 E-value=0.058 Score=53.08 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcc
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVVGGDA 188 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~ 188 (472)
++.+++.+|||+|||++....+...... ..+.++.++. |.+.-+ .+.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~--------~~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL--------YGKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEECCccHHHH---HHHHHHHHHHhCCceE-------
Confidence 5678999999999998654333322101 1234455554 223222 1333333332332221
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-CcHHHHHHHHHhC--CCCceEeeccccc-
Q 012059 189 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATIS- 264 (472)
Q Consensus 189 ~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~--~~~~~i~~SAT~~- 264 (472)
.+.+++.+...+.. +.++++|+||.+-+.... .....+..++... +....+.++||..
T Consensus 283 --------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 283 --------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred --------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 12344444444442 335789999998754221 1223444555421 3345778888876
Q ss_pred HHHHHHHhhh
Q 012059 265 QEVEKMSSSI 274 (472)
Q Consensus 265 ~~~~~~~~~~ 274 (472)
..+......+
T Consensus 345 ~~l~~~~~~f 354 (424)
T PRK05703 345 EDLKDIYKHF 354 (424)
T ss_pred HHHHHHHHHh
Confidence 4455555544
No 239
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.49 E-value=0.034 Score=52.66 Aligned_cols=47 Identities=9% Similarity=0.277 Sum_probs=27.5
Q ss_pred CCCeeEEEEeccchhhhcCc-HHHHHHHHHhC--CCCceEeecccccHHH
Q 012059 221 LDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI--SLPQILMYSATISQEV 267 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~-~~~~~~i~~~~--~~~~~i~~SAT~~~~~ 267 (472)
+.+++++|+|+.+......+ ...+..++... ....+|+.|.-.+.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 34578999999987643322 34455555544 3455666665545544
No 240
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.49 E-value=0.017 Score=57.24 Aligned_cols=92 Identities=22% Similarity=0.171 Sum_probs=60.4
Q ss_pred CCCCHHHH-HHHHHCCCCCCCH----HHHHHHhhHh--cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 79 CSLSQKLL-QNIEAAGYDMPTP----VQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 79 ~~l~~~i~-~~l~~~g~~~~~~----~Q~~~i~~~~--~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
.+..++++ ..|++.--.+++. +|.+-=+.+. .++-++|+|..|||||.+++.-+...+...+... .+..
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l----~~k~ 262 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL----QAKP 262 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc----ccCc
Confidence 44555554 4666654444443 4555544444 4556999999999999988766655555433322 2333
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhc
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
+||+.|++.+..-+.+.+-.++.
T Consensus 263 vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 263 VLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred eEEEcCcHHHHHHHHHhchhhcc
Confidence 99999999998877777777754
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=96.48 E-value=0.0066 Score=54.56 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=26.9
Q ss_pred CCeeEEEEeccchhhhc-CcHHHHHHHHHhC--CCCceEeeccccc
Q 012059 222 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATIS 264 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~--~~~~~i~~SAT~~ 264 (472)
.+.+++++||+|.+... .+...+..++... ...+++++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 35679999999987532 2344555555555 2345667777654
No 242
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.47 E-value=0.014 Score=61.91 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=53.0
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
.+++-|.+++... ..+++|.|..|||||.+...-+ .+++.. ..-....+|+|+-|+..|.++.+.+.++..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ri-a~Li~~-----~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRI-AWLMQV-----ENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHc-----CCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5799999998753 4689999999999998744333 344431 112345699999999999999888887753
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.44 E-value=0.04 Score=47.68 Aligned_cols=49 Identities=27% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
++|.||+|+|||...+-.+...+ . .+..++++.. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~---------~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A---------RGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H---------CCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 68999999999985444344333 1 3566888764 445566666666553
No 244
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.44 E-value=0.0088 Score=56.92 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 190 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 190 (472)
++.+.+.||||-|||++..-.+....+. .++....||-.-|--.+ ..++++.+++-+++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-------~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~--------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-------KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPLE--------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-------ccCcceEEEEeccchhh--HHHHHHHHHHHhCCceE---------
Confidence 7789999999999998754433333311 12333445544443222 23455555554444433
Q ss_pred HHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeeccccc-HHH
Q 012059 191 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATIS-QEV 267 (472)
Q Consensus 191 ~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~-~~~ 267 (472)
++-+|.-|...+. .+.++++|.||=+-+-.. .....++..++... +....+.+|||.. .++
T Consensus 265 ------------vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 265 ------------VVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred ------------EecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 3345555555544 355668888888775321 11234444444444 3345667788865 344
Q ss_pred HHHHhhh
Q 012059 268 EKMSSSI 274 (472)
Q Consensus 268 ~~~~~~~ 274 (472)
......|
T Consensus 329 kei~~~f 335 (407)
T COG1419 329 KEIIKQF 335 (407)
T ss_pred HHHHHHh
Confidence 5555544
No 245
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.44 E-value=0.028 Score=55.82 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=28.2
Q ss_pred CCeeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHH
Q 012059 222 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEV 267 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~ 267 (472)
.+.+++|+||+|.+.... ....+..++..+ ...++|+.|-..|...
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 356799999999875322 334555555554 3446666665555544
No 246
>PRK05642 DNA replication initiation factor; Validated
Probab=96.41 E-value=0.02 Score=51.61 Aligned_cols=42 Identities=17% Similarity=0.443 Sum_probs=26.1
Q ss_pred CeeEEEEeccchhhhc-CcHHHHHHHHHhC-CCCceEeeccccc
Q 012059 223 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAI-SLPQILMYSATIS 264 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~-~~~~~i~~SAT~~ 264 (472)
+++++|+|++|.+... .+...+..++..+ .....+++|++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 4568999999977433 3345566666655 2334556666544
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.37 E-value=0.036 Score=46.55 Aligned_cols=38 Identities=32% Similarity=0.334 Sum_probs=23.4
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
+++.|++|+|||.... .+...+. ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~-~i~~~~~---------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLAL-QLALNIA---------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHH-HHHHHHH---------hcCCEEEEEECCcch
Confidence 6889999999998433 2322221 135567777655444
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.037 Score=50.43 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=31.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
++.++++.||+|+|||..+ .++...+.. .+. -++++++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~---------~g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK---------AGI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH---------cCC-eEEEEEHHHHHHHHHHHH
Confidence 7789999999999999843 333333333 234 444466777766554433
No 249
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.36 E-value=0.031 Score=58.67 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012059 303 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 382 (472)
Q Consensus 303 ~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 382 (472)
+.|-...+..+......+.++||.++++..+..+.+.|++..+..+..+||+++..+|........+|+.+|+|+|....
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 34444444444333334568999999999999999999866788899999999999999999999999999999998433
Q ss_pred ccCCCCCCcEEEEecC
Q 012059 383 RGVELLGVRQVIIFDM 398 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~~ 398 (472)
-+.+.++..||..+.
T Consensus 253 -~~p~~~l~liVvDEe 267 (679)
T PRK05580 253 -FLPFKNLGLIIVDEE 267 (679)
T ss_pred -cccccCCCEEEEECC
Confidence 255677888886553
No 250
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.34 E-value=0.023 Score=57.28 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012059 303 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 382 (472)
Q Consensus 303 ~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 382 (472)
+.|-...+..+......+.++||.++++..+..+++.|++..+..+..+||+++..+|.+......+|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 34444444444443344668999999999999999999877788899999999999999999989999999999998543
Q ss_pred ccCCCCCCcEEEEec
Q 012059 383 RGVELLGVRQVIIFD 397 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~ 397 (472)
. ..++++..||..+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4567788888654
No 251
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.33 E-value=0.024 Score=59.83 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=50.9
Q ss_pred CCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 97 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 97 ~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
+++-|.+++.. ...+++|.|..|||||.+.+--+ .+++.. .......+|+|+.|+..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri-~~ll~~-----~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKI-AYLIQN-----CGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHH-HHHHHh-----cCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998865 45689999999999999744444 444431 11234669999999999999888887654
No 252
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.33 E-value=0.032 Score=54.97 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=26.1
Q ss_pred eeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHHHH
Q 012059 224 IRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEK 269 (472)
Q Consensus 224 ~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~ 269 (472)
.+++++||+|.+.... ....+..++..+ ...++++.|...|..+..
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 5689999999875432 233344555444 344555544444554443
No 253
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.31 E-value=0.011 Score=61.94 Aligned_cols=70 Identities=23% Similarity=0.120 Sum_probs=51.6
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.+++-|.+++.. ...+++|.|+.|||||.+...- +.+++.. ..-...++|+++.|+..|.++.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~R-ia~Li~~-----~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNK-IAHLIRG-----CGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHH-HHHHHHh-----cCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478889999876 3567999999999999974444 4444431 11234579999999999999888887654
No 254
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.29 E-value=0.025 Score=56.04 Aligned_cols=51 Identities=12% Similarity=0.392 Sum_probs=30.8
Q ss_pred CeeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHHHHHHhh
Q 012059 223 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSS 273 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~~~~ 273 (472)
..+++++||+|.+.... ....+..++..+ ...++|+.|.+.|..+..+...
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH
Confidence 57799999999886432 234445555443 4456666665666665544333
No 255
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.28 E-value=0.068 Score=54.48 Aligned_cols=147 Identities=11% Similarity=0.158 Sum_probs=79.4
Q ss_pred CCHHHHHHHhhH---hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 97 PTPVQMQAIPSA---LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 97 ~~~~Q~~~i~~~---~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
|.|.=.+-|..+ ++.+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-++++.+.+....
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f---------~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF---------LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh---------cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 344444444443 466778999999999998655444433221 25679999999999998888877766
Q ss_pred cCCC--------CeEEEEEcCcch--HHHHHHHhcC-CCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHH
Q 012059 174 KGLP--------FKTALVVGGDAM--ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRD 242 (472)
Q Consensus 174 ~~~~--------~~~~~~~~g~~~--~~~~~~~~~~-~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~ 242 (472)
...+ ..+..+.||... .........+ ..|.+++-. .+...-..++++|+|||+.+.. +
T Consensus 241 e~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~ 309 (752)
T PHA03333 241 HAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----G 309 (752)
T ss_pred HHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----H
Confidence 5322 112223332210 0000000001 223332210 1222223578999999998754 3
Q ss_pred HHHHHHHhC--CCCceEeecccc
Q 012059 243 QVMQIFRAI--SLPQILMYSATI 263 (472)
Q Consensus 243 ~~~~i~~~~--~~~~~i~~SAT~ 263 (472)
.+..++-.+ ...+++++|.+-
T Consensus 310 ~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 310 ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHccCCCceEEEeCCC
Confidence 344444443 355666666653
No 256
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.27 E-value=0.046 Score=62.37 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=45.3
Q ss_pred CCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
.+++.|.+|+..++.+ +-++|.+..|+|||.+ +-.++..+... ....+..++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l-----~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL-----PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh-----hcccCceEEEECCcHHHHHHH
Confidence 6899999999999964 5699999999999984 33333332210 112356788899998776644
No 257
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.055 Score=50.92 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHhhHh----cCC---cEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 94 YDMPTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~----~~~---~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
+..++|||..++..+. +++ -.++.||.|.||+..+ ..+...++.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhC
Confidence 4578999999998876 343 4889999999999854 334444443
No 258
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.25 E-value=0.047 Score=54.16 Aligned_cols=50 Identities=16% Similarity=0.418 Sum_probs=28.8
Q ss_pred CeeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHHHHHHh
Q 012059 223 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEKMSS 272 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~~~ 272 (472)
..+++++||+|.+.+.. ....+..++..+ ...++++.|...|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 46789999999876442 233444555444 334555555555555544433
No 259
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.24 E-value=0.016 Score=51.67 Aligned_cols=46 Identities=13% Similarity=0.398 Sum_probs=30.8
Q ss_pred CCeeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHH
Q 012059 222 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEV 267 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~ 267 (472)
...+++++|++|.+.... +...+..++..+ ...++|+.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 357899999999986542 345566666655 5667777776766544
No 260
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.24 E-value=0.089 Score=55.28 Aligned_cols=28 Identities=14% Similarity=0.570 Sum_probs=18.7
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHh
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRA 250 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~ 250 (472)
....+|||||+|.+...+ ...+..++..
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 346689999999997542 4445555543
No 261
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.019 Score=56.54 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.9
Q ss_pred EEEEccCCCCcchhhHHH
Q 012059 114 LLVSANTGSGKTASFLVP 131 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~ 131 (472)
+++.||.|+|||.++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 43 YIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999865443
No 262
>PLN03025 replication factor C subunit; Provisional
Probab=96.14 E-value=0.054 Score=51.43 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=23.0
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
..+++|+||+|.+.... ...+...+...+....+.++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEeC
Confidence 57899999999986433 3444444544433333444443
No 263
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.13 E-value=0.042 Score=57.10 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 012059 302 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG-MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 380 (472)
Q Consensus 302 ~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 380 (472)
.+.|.+..+.++......+..+||.++.+..+..+...|+...+ ..+..+|++++..+|.+......+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 34677777777777666677899999999999999999997777 77999999999999999999999999999999986
Q ss_pred ccccCCCCCCcEEEEecC
Q 012059 381 LGRGVELLGVRQVIIFDM 398 (472)
Q Consensus 381 ~~~Gidi~~~~~VI~~~~ 398 (472)
+. =.-+++...||..+-
T Consensus 250 Av-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred eE-EeccCCCCEEEEEcC
Confidence 43 346677888887553
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.12 E-value=0.021 Score=51.58 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.+..+++.||+|+|||..
T Consensus 44 ~~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346799999999999973
No 265
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.12 E-value=0.032 Score=55.11 Aligned_cols=145 Identities=11% Similarity=0.085 Sum_probs=84.8
Q ss_pred CCCHHHHHHHhhHh------cC----CcEEEEccCCCCcchhhH-HHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHH
Q 012059 96 MPTPVQMQAIPSAL------SG----KSLLVSANTGSGKTASFL-VPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 164 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~------~~----~~~iv~a~TGsGKT~~~~-l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q 164 (472)
.+-|||.-++-.++ .+ +..+|..|-+-|||..+. +.+...+... ..+..+.|++|+.+-+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------hcCCcEEEEeccHHHHHH
Confidence 57899999998887 22 348999999999997544 3333333331 456779999999999998
Q ss_pred HHHHHHHHhcCCC-CeEEEEEcCcchHHHHHHHhcCCC---EEEeChHHHHHHHHc--CCCCCCCeeEEEEeccchhhhc
Q 012059 165 VEEQAKLLGKGLP-FKTALVVGGDAMARQVYRIQQGVE---LIVGTPGRLIDLLMK--HDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~---I~i~Tp~~l~~~~~~--~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
....++......+ ++.. ..-..+ |...--...+..+.. +..+-.+..+.|+||.|.....
T Consensus 134 ~F~~ar~mv~~~~~l~~~--------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 134 SFNPARDMVKRDDDLRDL--------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred hhHHHHHHHHhCcchhhh--------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 8888887654432 0000 000111 111111111122222 2334456779999999998765
Q ss_pred -CcHHHHHHHHHhCCCCceEeecc
Q 012059 239 -GFRDQVMQIFRAISLPQILMYSA 261 (472)
Q Consensus 239 -~~~~~~~~i~~~~~~~~~i~~SA 261 (472)
.....+..-+...++.+++..|.
T Consensus 200 ~~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 200 EDMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHHhhhccCcCceEEEEec
Confidence 22222222233337777777765
No 266
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.11 E-value=0.039 Score=54.43 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=24.5
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccccc
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
...+|++||+|++.. .+...++..+....++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVEDGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhcCcEEEEEeCCC
Confidence 456899999998852 33334455555566777766643
No 267
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.10 E-value=0.047 Score=50.18 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 57999999999999854
No 268
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.09 E-value=0.017 Score=56.31 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCHHHHHHHhhHhcCCcEEEEccCCCCcchhhH
Q 012059 97 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 97 ~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~ 129 (472)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344455666667789999999999999998543
No 269
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.09 E-value=0.028 Score=50.43 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+.++++.||+|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999854
No 270
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.037 Score=47.11 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=53.0
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 191 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (472)
.=.++.+|+.||||...+ -...+.. ..+.++++..|...- + .+...+.-.-|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl-~r~~~~~---------~~g~~v~vfkp~iD~---------R----~~~~~V~Sr~G~~~-- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELL-RRARRYK---------EAGMKVLVFKPAIDT---------R----YGVGKVSSRIGLSS-- 59 (201)
T ss_pred EEEEEEccCcCcchHHHH-HHHHHHH---------HcCCeEEEEeccccc---------c----cccceeeeccCCcc--
Confidence 346889999999998533 3332222 246778888884221 1 11122222222221
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 192 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 192 ~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
.-++|-.+..+.+.+....... .++.|.+|||+-+.
T Consensus 60 --------~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~ 95 (201)
T COG1435 60 --------EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD 95 (201)
T ss_pred --------cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC
Confidence 2466667777777776544322 27899999999663
No 271
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.07 E-value=0.019 Score=58.21 Aligned_cols=47 Identities=11% Similarity=0.372 Sum_probs=29.6
Q ss_pred CCeeEEEEeccchhhhcC-cHHHHHHHHHhC--CCCceEeecccccHHHH
Q 012059 222 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVE 268 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~ 268 (472)
.++++|||||+|.+.... ....+..++..+ ...++|+.|-..+..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 357899999999885433 234555566555 34567766655555443
No 272
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.013 Score=55.44 Aligned_cols=41 Identities=17% Similarity=0.068 Sum_probs=29.9
Q ss_pred CCCHHHHHHHhhHhcCC----cEEEEccCCCCcchhhHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSALSGK----SLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~----~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.++|||...|..+.... -.++.||.|.|||..+. .+...++
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~-~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE-RLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH-HHHHHHc
Confidence 45899999999988432 48899999999998543 3333333
No 273
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.038 Score=55.00 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=16.2
Q ss_pred CcEEEEccCCCCcchhhHHH
Q 012059 112 KSLLVSANTGSGKTASFLVP 131 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~ 131 (472)
+.+++.||.|+|||.++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 35999999999999865443
No 274
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.01 E-value=0.036 Score=49.81 Aligned_cols=41 Identities=10% Similarity=0.288 Sum_probs=24.2
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhC--CCCceEeeccccc
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATIS 264 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT~~ 264 (472)
..+++|+||+|.+... ....+..++... ....+++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3568999999987432 244455555443 2233466666654
No 275
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.038 Score=58.79 Aligned_cols=43 Identities=14% Similarity=0.356 Sum_probs=25.4
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecccccH
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 265 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~ 265 (472)
.+++++||||+|+|.... .+.+.+++...+..-+++|..|-++
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEeCChh
Confidence 468899999999996443 3344444444444434444444443
No 276
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.99 E-value=0.026 Score=53.06 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=41.4
Q ss_pred HHHCCCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
+...|. +++.|.+.+..+. .+.+++++|+||||||.. +-.++..+.. .....+++.+=.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~-------~~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVA-------SAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhc-------CCCCceEEEecCCccc
Confidence 444444 5677887776655 667999999999999983 4445444322 1234567777777776
No 277
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.98 E-value=0.042 Score=55.69 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=81.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC-CCe-EEEEEcCc
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFK-TALVVGGD 187 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~-~~~~~~g~ 187 (472)
+.+-.++..|--.|||.... +++..++. ...+-++++.+|.+..++.+++++....+.. +-. +..+.| .
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~-------s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e 323 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALA-------TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E 323 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHH-------hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c
Confidence 44678899999999999544 56554443 1247789999999999999999888765432 111 111222 1
Q ss_pred chHHHHHHHhcC--CCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--CCCceEeecccc
Q 012059 188 AMARQVYRIQQG--VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATI 263 (472)
Q Consensus 188 ~~~~~~~~~~~~--~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT~ 263 (472)
.. ......+ ..|.+++. .+.+...-..++++|+|||+.+.+. .+..++-.+ .++++|.+|.|-
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCC
Confidence 11 0011122 24555531 2223334457999999999988643 344444433 588999999883
No 278
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.98 E-value=0.047 Score=63.79 Aligned_cols=62 Identities=26% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhH--HHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFL--VPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~--l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
.+++.|.+|+..++.+ +-++|.+..|+|||.+.. +-.+..+.. ..+..++.++||..-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~--------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE--------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH--------hcCCeEEEEeChHHHHHHH
Confidence 6899999999998855 457889999999998531 012222221 2466799999997776644
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.97 E-value=0.088 Score=51.82 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=27.2
Q ss_pred eEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhh
Q 012059 225 RMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI 274 (472)
Q Consensus 225 ~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~ 274 (472)
++||+|.+-+... ...-.++..+.... +..-++.++||...+....++.+
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 7899999855421 11233344444433 44556667777665554444443
No 280
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.96 E-value=0.039 Score=58.77 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
..+++-|.+++.. ...+++|.|..|||||.+...-+. +++... .-...++|+++-|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria-~Li~~~-----~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIA-HLIAEK-----NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHH-HHHHcC-----CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3578999999975 356899999999999987444443 443310 11235699999999999988888877643
No 281
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.96 E-value=0.036 Score=58.16 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=27.9
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecccccHHHHH
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEK 269 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~~ 269 (472)
...++|+||+|++.. .....++..+...+++++++|-.+....
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVENGTITLIGATTENPYFE 151 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhcCceEEEEEecCCChHhh
Confidence 356899999998853 2233445555667788888876544433
No 282
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.95 E-value=0.042 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCcchhhHHHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPV 132 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~ 132 (472)
|+-+.+.||||+|||++....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4458899999999998654433
No 283
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.94 E-value=0.056 Score=56.95 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=66.2
Q ss_pred CCCCEEEEECCchhHHHHHHHHhh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccccCCCCCCcEEE
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGRGVELLGVRQVI 394 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~~~~VI 394 (472)
.+.+++|.++++.-+...++.+++ ..+..+..+||+++..+|..+++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999999888877763 33688999999999999999999999999999999984 45567788898888
Q ss_pred Ee
Q 012059 395 IF 396 (472)
Q Consensus 395 ~~ 396 (472)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 64
No 284
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.94 E-value=0.0025 Score=53.98 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=52.5
Q ss_pred EEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH
Q 012059 115 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY 194 (472)
Q Consensus 115 iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 194 (472)
++.|+-|-|||.+.-+.+.. +.. ....+++|.+|+.+-++.+.+.+..-.+..+++..... .......
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~--------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQ--------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS-------------EEEE-SS--S-HHHHHCC-------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHH--------hcCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccc
Confidence 57899999999864443322 211 12256999999999888777766555444433320000 0000000
Q ss_pred HHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccccc
Q 012059 195 RIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 195 ~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
....+..|-+..|+.+...- ...+++|||||=.+- -+.+..++ .....+.||.|..
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll---~~~~~vv~stTi~ 124 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLL---RRFPRVVFSTTIH 124 (177)
T ss_dssp ----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHH---CCSSEEEEEEEBS
T ss_pred cccccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHH---hhCCEEEEEeecc
Confidence 11124567777776554431 134789999998773 34444443 3455677788863
No 285
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.91 E-value=0.021 Score=56.05 Aligned_cols=134 Identities=12% Similarity=0.153 Sum_probs=75.8
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH-HHHHHHHHHHHHhcCCCCeEEEEEcCcchHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE-LCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 191 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (472)
-.++.++.|||||.+..+.++..++.. ..+.+++++-|+.. |...+...+......+++....-......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--
Confidence 367899999999998887777776652 14577899989886 66667777776655444432111111100
Q ss_pred HHHHHhc-CCCEEEeCh-HHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC---CCCceEeecccccH
Q 012059 192 QVYRIQQ-GVELIVGTP-GRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SLPQILMYSATISQ 265 (472)
Q Consensus 192 ~~~~~~~-~~~I~i~Tp-~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~---~~~~~i~~SAT~~~ 265 (472)
.+ .+.. +..|++..- +...++. ....++++.+|||..+... .+..++.++ .....+.+|.+++.
T Consensus 74 ~i-~~~~~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 74 EI-KILNTGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EE-EecCCCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 00 0111 334555442 1111111 1233689999999988433 333444433 22224778888764
No 286
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.84 E-value=0.037 Score=48.53 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.++++.||+|.|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 36999999999999843
No 287
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.84 E-value=0.043 Score=61.70 Aligned_cols=122 Identities=21% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC-
Q 012059 97 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG- 175 (472)
Q Consensus 97 ~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~- 175 (472)
.|+-|.++|.. .+++++|.|..|||||.+..--++..+... ....++|+|+=|+..|..+.+.+..-...
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 57889999973 688999999999999998665566555431 12246999999999998877777654321
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCC--CeeEEEEeccch
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELD--DIRMFVLDEVDC 234 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~--~~~~iVvDE~h~ 234 (472)
..- ........+.+..-...-|+|...++..+.+.....- +..+=|.||...
T Consensus 73 ~~~-------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQQ-------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hhc-------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 110 0011111122223346789999998755544322111 224456888875
No 288
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.82 E-value=0.18 Score=46.20 Aligned_cols=130 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC--CH-HHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP--TR-ELCIQVEEQAKLLGKGLPFKTALVVGG 186 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P--t~-~L~~q~~~~~~~~~~~~~~~~~~~~~g 186 (472)
.+..+.+.+++|+|||..+...+.. +.. .+.++.++.- .+ ..+.||.. ++...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~---------~~~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~~---- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG---------KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVIA---- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH---------cCCeEEEEecCCCCHHHHHHHHH----HhhhcCceEEe----
Confidence 3467899999999999865443322 211 2334544442 22 34444443 33222222211
Q ss_pred cchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-CcHHHHHHHHHhC-CCCceEeeccccc
Q 012059 187 DAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI-SLPQILMYSATIS 264 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~-~~~~~i~~SAT~~ 264 (472)
..+++.+.+.+..-. ...++++|++|-+-+.... .....+..++... +...++.+|||..
T Consensus 136 -----------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 136 -----------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred -----------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 124444444433211 1235789999999875322 1233344444443 3334667899864
Q ss_pred -HHHHHHHhhhc
Q 012059 265 -QEVEKMSSSIS 275 (472)
Q Consensus 265 -~~~~~~~~~~~ 275 (472)
++....++.|.
T Consensus 198 ~~d~~~~~~~f~ 209 (270)
T PRK06731 198 SKDMIEIITNFK 209 (270)
T ss_pred HHHHHHHHHHhC
Confidence 56666666653
No 289
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.028 Score=57.35 Aligned_cols=40 Identities=10% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
...+++||||+|++.... ...+.+.+...+..-.+.+++|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEEC
Confidence 457899999999886443 2334444444333334444444
No 290
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.76 E-value=0.034 Score=51.79 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=54.0
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 191 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (472)
.++|+++|+|+|||..+-+.+-. .+....+.+=+..|.+-.+.+...++.-.+.
T Consensus 163 pSmIlWGppG~GKTtlArlia~t----------sk~~SyrfvelSAt~a~t~dvR~ife~aq~~---------------- 216 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAST----------SKKHSYRFVELSATNAKTNDVRDIFEQAQNE---------------- 216 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhh----------cCCCceEEEEEeccccchHHHHHHHHHHHHH----------------
Confidence 36999999999999854332221 1122345666666665555444444332110
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecccc
Q 012059 192 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 263 (472)
Q Consensus 192 ~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~ 263 (472)
.....+-.++.+||+|++.. .+-..++-...+--+++..||-
T Consensus 217 --------------------------~~l~krkTilFiDEiHRFNk----sQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 217 --------------------------KSLTKRKTILFIDEIHRFNK----SQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred --------------------------HhhhcceeEEEeHHhhhhhh----hhhhcccceeccCceEEEeccc
Confidence 00122344789999999852 2233344444566677777774
No 291
>CHL00181 cbbX CbbX; Provisional
Probab=95.75 E-value=0.23 Score=46.23 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCcchhhHH
Q 012059 111 GKSLLVSANTGSGKTASFLV 130 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l 130 (472)
+.++++.||+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999986543
No 292
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.75 E-value=0.083 Score=53.04 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.7
Q ss_pred cEEEEccCCCCcchhhHHH
Q 012059 113 SLLVSANTGSGKTASFLVP 131 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~ 131 (472)
.++++||.|+|||.++.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6999999999999865443
No 293
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.70 E-value=0.093 Score=50.30 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
...++||+||+|.+... ....+..++...+....+.++++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987532 23344455554443333444444
No 294
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.1 Score=53.75 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=14.6
Q ss_pred EEEEccCCCCcchhhHHH
Q 012059 114 LLVSANTGSGKTASFLVP 131 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~ 131 (472)
.|+.||.|+|||.++.+.
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999865443
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.077 Score=50.63 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCCcchhhHHHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPV 132 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~ 132 (472)
++.+++.+|+|+|||.+..-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999998644333
No 296
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.048 Score=56.46 Aligned_cols=42 Identities=12% Similarity=0.331 Sum_probs=24.2
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccccc
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
..++++||||+|.|....+ +.+.+++..-+..-+++++.|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEECCh
Confidence 4578999999999865432 33334444433333444444433
No 297
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.057 Score=52.11 Aligned_cols=46 Identities=15% Similarity=0.410 Sum_probs=32.5
Q ss_pred CeeEEEEeccchhhhc-CcHHHHHHHHHhC--CCCceEeecccccHHHH
Q 012059 223 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEVE 268 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~ 268 (472)
+++++++|+++.+... .....+-.++..+ ...|+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5789999999988655 3455555666666 44578888877776654
No 298
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.061 Score=56.14 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 190 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 190 (472)
++-+.+.+|||+|||++....+...... ..+.++.++.--..-+- ..+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--------~G~kkV~lit~Dt~Rig-A~eQL~~~a~~~gvpv~--------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR--------EGADQLALLTTDSFRIG-ALEQLRIYGRILGVPVH--------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH--------cCCCeEEEecCcccchH-HHHHHHHHHHhCCCCcc---------
Confidence 3457899999999998654433322111 12234544443211100 12334444433333221
Q ss_pred HHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-CcHHHHHHHHHhC-CCCceEeeccccc-HHH
Q 012059 191 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI-SLPQILMYSATIS-QEV 267 (472)
Q Consensus 191 ~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~-~~~~~i~~SAT~~-~~~ 267 (472)
++.+|+.+.+.+.. +.+.++|+||=+-+.... .....+..+.... +...++.++||.. +.+
T Consensus 247 ------------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 247 ------------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred ------------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 22355555555542 334578888877754321 1122222222222 3445667777764 334
Q ss_pred HHHHhhh
Q 012059 268 EKMSSSI 274 (472)
Q Consensus 268 ~~~~~~~ 274 (472)
.+..+.|
T Consensus 311 ~~i~~~f 317 (767)
T PRK14723 311 NEVVHAY 317 (767)
T ss_pred HHHHHHH
Confidence 4444444
No 299
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.59 E-value=0.16 Score=51.09 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH-HhcCCCCe-EEEEEcCcc
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL-LGKGLPFK-TALVVGGDA 188 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~-~~~~~~g~~ 188 (472)
.+-.+..-|--.|||+ ++.|++..++.. -.+-++.|++.-+.-++-+.+++.. +.+.++-+ +....++
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s-------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~-- 271 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN-------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN-- 271 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh-------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc--
Confidence 3567778899999999 788998887762 3577899999999888776666553 22223322 1111111
Q ss_pred hHHHHHHHhcCCCEEEeChHH-----HHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--CCCceEeecc
Q 012059 189 MARQVYRIQQGVELIVGTPGR-----LIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSA 261 (472)
Q Consensus 189 ~~~~~~~~~~~~~I~i~Tp~~-----l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~~~~i~~SA 261 (472)
.|.+.-|+. +....+.+...-+++++++|||||-+. ...+..++..+ .+.++|..|.
T Consensus 272 ------------tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 272 ------------VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred ------------EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeC
Confidence 222222211 112233444556789999999999774 35556676666 6788899987
Q ss_pred c
Q 012059 262 T 262 (472)
Q Consensus 262 T 262 (472)
|
T Consensus 336 ~ 336 (668)
T PHA03372 336 T 336 (668)
T ss_pred C
Confidence 7
No 300
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.57 E-value=0.086 Score=54.60 Aligned_cols=148 Identities=17% Similarity=0.207 Sum_probs=84.0
Q ss_pred HHHCCCCCCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 166 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 166 (472)
+.....+.+..-|.+.+..++.. +-+++.|.-|=|||.+.-+.+.. +... .....++|.+|+.+-++.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~-------~~~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARL-------AGSVRIIVTAPTPANVQTLF 278 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHh-------cCCceEEEeCCCHHHHHHHH
Confidence 44444445555555566666644 35889999999999876655522 2220 11457999999999988888
Q ss_pred HHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHH
Q 012059 167 EQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 246 (472)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~ 246 (472)
+.+.+-...++++..+......... ........|=+.+|.... ..-+++|||||=.+- -+.+..
T Consensus 279 ~fa~~~l~~lg~~~~v~~d~~g~~~--~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~ 342 (758)
T COG1444 279 EFAGKGLEFLGYKRKVAPDALGEIR--EVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHK 342 (758)
T ss_pred HHHHHhHHHhCCcccccccccccee--eecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHH
Confidence 8777655555543222211100000 000011234444553222 116789999998763 444445
Q ss_pred HHHhCCCCceEeecccc
Q 012059 247 IFRAISLPQILMYSATI 263 (472)
Q Consensus 247 i~~~~~~~~~i~~SAT~ 263 (472)
++.. -+.++||.|+
T Consensus 343 l~~~---~~rv~~sTTI 356 (758)
T COG1444 343 LLRR---FPRVLFSTTI 356 (758)
T ss_pred HHhh---cCceEEEeee
Confidence 5443 3567888886
No 301
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.23 Score=48.17 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=63.3
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 190 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 190 (472)
-+++.+|+|+|||+...-.+...... .+.++.++. +.|..+. ..+..++...++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~---------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~-------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH---------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP-------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh---------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeee--------
Confidence 37889999999998655444332222 234455544 3344333 2344444333332211
Q ss_pred HHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhh-hcCcHHHHHHHHHhC----CCCceEeecccccH
Q 012059 191 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QRGFRDQVMQIFRAI----SLPQILMYSATISQ 265 (472)
Q Consensus 191 ~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~-~~~~~~~~~~i~~~~----~~~~~i~~SAT~~~ 265 (472)
+..+..+...+.. .++++|++|=+-+.. +......+..++... +...++.+|||...
T Consensus 285 -------------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 285 -------------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred -------------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 1112233333321 357889999766542 111233444444443 23467888999865
Q ss_pred -HHHHHHhhh
Q 012059 266 -EVEKMSSSI 274 (472)
Q Consensus 266 -~~~~~~~~~ 274 (472)
.+....+.+
T Consensus 347 ~~~~~~~~~f 356 (432)
T PRK12724 347 HHTLTVLKAY 356 (432)
T ss_pred HHHHHHHHHh
Confidence 455555544
No 302
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.56 E-value=0.031 Score=56.96 Aligned_cols=81 Identities=22% Similarity=0.387 Sum_probs=60.1
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCCcEE--------EEecCCCCHhHHHHhhcccccCCCc-c-eEEEEEc--CCChHH
Q 012059 365 RSFLVGEVPVIVATGILGRGVELLGVRQV--------IIFDMPNSIKEYVHQIGRASQMGDE-G-TAIVFVN--EENKNL 432 (472)
Q Consensus 365 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~V--------I~~~~p~s~~~~~Qr~GR~~R~g~~-g-~~~~~~~--~~~~~~ 432 (472)
+.|..|+..|-|-+.+++-||.+..-+-| |-..+|||.+..+|.+||+.|..+. + ..+.+++ ..+.+.
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 46888998898889999999988654433 4588999999999999999998763 2 2333333 246677
Q ss_pred HHHHHHHHHHcCC
Q 012059 433 FQELVDILKSSGA 445 (472)
Q Consensus 433 ~~~l~~~l~~~~~ 445 (472)
..-+.+-|+..|.
T Consensus 931 AS~VAKRLESLGA 943 (1300)
T KOG1513|consen 931 ASIVAKRLESLGA 943 (1300)
T ss_pred HHHHHHHHHhhcc
Confidence 7777777777654
No 303
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.51 E-value=0.039 Score=48.11 Aligned_cols=18 Identities=44% Similarity=0.746 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCcchhhH
Q 012059 112 KSLLVSANTGSGKTASFL 129 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~ 129 (472)
-++++.+|+|.|||++.+
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 479999999999999743
No 304
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.51 E-value=0.03 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+..+++++|||||||+. +-.++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 556799999999999984 34444444
No 305
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.51 E-value=0.076 Score=50.41 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
..++||+||+|.+........+..++...+....+.++++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999988333234455555555544334444444
No 306
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.42 Score=43.53 Aligned_cols=169 Identities=16% Similarity=0.258 Sum_probs=87.2
Q ss_pred HHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCC-----cEEEEccCCCCcchh
Q 012059 53 TDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGK-----SLLVSANTGSGKTAS 127 (472)
Q Consensus 53 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~-----~~iv~a~TGsGKT~~ 127 (472)
-..++..+...+ ...+|...|++..=-+.-.++|++.-+ -|+ -+|.+..|+ .+++.+|+|+||+.
T Consensus 112 ~kKLr~~L~sAI---v~EKPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSY- 181 (439)
T KOG0739|consen 112 KKKLRSALNSAI---VREKPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSY- 181 (439)
T ss_pred HHHHHHHhhhhh---hccCCCCchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHH-
Confidence 344555544322 224566677775322333445544311 110 135566664 49999999999996
Q ss_pred hHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeCh
Q 012059 128 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTP 207 (472)
Q Consensus 128 ~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp 207 (472)
+.-++.. ..+ ...+-+.+..|+..|..+-+++.+.
T Consensus 182 -LAKAVAT-----------EAn-STFFSvSSSDLvSKWmGESEkLVkn-------------------------------- 216 (439)
T KOG0739|consen 182 -LAKAVAT-----------EAN-STFFSVSSSDLVSKWMGESEKLVKN-------------------------------- 216 (439)
T ss_pred -HHHHHHh-----------hcC-CceEEeehHHHHHHHhccHHHHHHH--------------------------------
Confidence 3333321 112 3667777888877776655555321
Q ss_pred HHHHHHHHcCCCCCCCeeEEEEeccchhhhcC---cHHHHH----HHHHhC-----CCCceEeecccccHHH-HHHHhhh
Q 012059 208 GRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG---FRDQVM----QIFRAI-----SLPQILMYSATISQEV-EKMSSSI 274 (472)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~---~~~~~~----~i~~~~-----~~~~~i~~SAT~~~~~-~~~~~~~ 274 (472)
|..+...+ ..+.|.+||+|.+.... -....+ +++-.+ .+.-++.+.||--+.+ ....++-
T Consensus 217 --LFemARe~-----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRR 289 (439)
T KOG0739|consen 217 --LFEMAREN-----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRR 289 (439)
T ss_pred --HHHHHHhc-----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHH
Confidence 11222211 24579999999876432 112222 223333 3456788888854433 3334444
Q ss_pred cCCcEEEEe
Q 012059 275 SKDIVVVSV 283 (472)
Q Consensus 275 ~~~~~~i~~ 283 (472)
+...+.|..
T Consensus 290 FekRIYIPL 298 (439)
T KOG0739|consen 290 FEKRIYIPL 298 (439)
T ss_pred hhcceeccC
Confidence 444444433
No 307
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.49 E-value=0.17 Score=50.34 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=51.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.-+++.+++|+|||+. ++-+...+.. .+.+++|+.- .+-..|+...+++++.... ...+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~---------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~--~l~~~~e--- 142 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTL-LLQVAARLAA---------AGGKVLYVSG-EESASQIKLRAERLGLPSD--NLYLLAE--- 142 (446)
T ss_pred CCEEEEEECCCCCCHHHH-HHHHHHHHHh---------cCCeEEEEEc-cccHHHHHHHHHHcCCChh--cEEEeCC---
Confidence 356689999999999984 3333333221 2556888874 3444566655655542211 1111111
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 237 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~ 237 (472)
...+.+...+.. ...++||+|+++.+..
T Consensus 143 ---------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 ---------------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 122333344332 2467999999998764
No 308
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.22 Score=46.61 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=30.4
Q ss_pred CcccCcccCC-CCHHHHHHHH---HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCS-LSQKLLQNIE---AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~-l~~~i~~~l~---~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|++.| |..++. .++ .....+|--++.-.| ..-+.+++.+|+|+|||+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~-EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQ-EIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CCCCChhhccCHHHHHH-HHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHH
Confidence 3455677765 444443 232 234444433332222 2347799999999999984
No 309
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.39 Score=46.28 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=18.9
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
.|+++.|+||+|||.+ .--++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 4799999999999986 3444444443
No 310
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.07 Score=53.84 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=14.7
Q ss_pred cEEEEccCCCCcchhhHH
Q 012059 113 SLLVSANTGSGKTASFLV 130 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l 130 (472)
-.++.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 368999999999986544
No 311
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.088 Score=50.95 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.1
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
+++.||.|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999985433
No 312
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.41 E-value=0.2 Score=40.25 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.4
Q ss_pred eeEEEEeccchhhhcC
Q 012059 224 IRMFVLDEVDCMLQRG 239 (472)
Q Consensus 224 ~~~iVvDE~h~~~~~~ 239 (472)
..++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999987654
No 313
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.38 E-value=0.051 Score=51.21 Aligned_cols=65 Identities=26% Similarity=0.365 Sum_probs=42.8
Q ss_pred HHHHHCCCCCCCHHHHHHHhhH-hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 87 QNIEAAGYDMPTPVQMQAIPSA-LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 87 ~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
+.+...|+ +++.|.+.+..+ ..+++++++|+||||||. ++-.++..+.. .....+++++-.+.+|
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~-------~~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVI-------QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhh-------cCCCceEEEEcCCCcc
Confidence 44444454 457788887654 477899999999999996 34445444321 1234567777777776
No 314
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.05 Score=54.15 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=34.8
Q ss_pred CCCcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 69 VPAPILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 69 ~p~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
...|-.+|++.|--.++...|... .+.+|- +-+++-.- ....+++++|+|+|||+.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd--~~k~lGi~-~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPD--LFKALGID-APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHH--HHHHhCCC-CCCceEEeCCCCccHHHH
Confidence 345677899988666666655432 233332 33333221 235699999999999984
No 315
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.025 Score=52.58 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHhhHhcCC-cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 93 GYDMPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~~~~~~-~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.|..+++-|...+-.+...+ |+++++.||||||+ ++-++.... ....+++.+=-|.+|
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i---------~~~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFI---------DSDERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcC---------CCcccEEEEeehhhh
Confidence 46678888999988877665 99999999999998 333332221 233478888888887
No 316
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.047 Score=56.75 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=84.3
Q ss_pred EEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 012059 297 AIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV 376 (472)
Q Consensus 297 ~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 376 (472)
...++.+.|.+..+.++.+....+..+||.++.+.....+...++...|.++..+|+++++.+|.....+..+|+.+|+|
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVI 301 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVI 301 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEE
Confidence 34466777888888888887778889999999999999999999988899999999999999999999999999999999
Q ss_pred EeccccccCCCCCCcEEEE
Q 012059 377 ATGILGRGVELLGVRQVII 395 (472)
Q Consensus 377 aT~~~~~Gidi~~~~~VI~ 395 (472)
.|..+- =.-++++..||.
T Consensus 302 GtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 302 GTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred Eechhh-cCchhhccEEEE
Confidence 998542 245667777775
No 317
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.35 E-value=0.091 Score=44.31 Aligned_cols=42 Identities=7% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccccc
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 264 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~ 264 (472)
...+++|+||||.|.... ...+.+.+..-+..-++.++++-+
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 568999999999986433 444445555444444444544433
No 318
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.087 Score=52.57 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.3
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
+++.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999986443
No 319
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.30 E-value=0.088 Score=54.98 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=66.3
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccccCCCCCCcEEE
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGRGVELLGVRQVI 394 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~~~~VI 394 (472)
.+.+++|.++++.-+...++.+++. .+..+..+||+++..+|...++...+|+.+|+|+|.. +...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4568999999999999888777643 3689999999999999999999999999999999984 45567788888888
Q ss_pred Eec
Q 012059 395 IFD 397 (472)
Q Consensus 395 ~~~ 397 (472)
.-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 643
No 320
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.30 E-value=0.054 Score=49.82 Aligned_cols=109 Identities=20% Similarity=0.369 Sum_probs=54.2
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccC--CCCCceEEEEcCCHHHHHHHHHHH-HHHhcCCCCeEEEEEcCcc
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ--NQKNPLAMVLTPTRELCIQVEEQA-KLLGKGLPFKTALVVGGDA 188 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~--~~~~~~~lil~Pt~~L~~q~~~~~-~~~~~~~~~~~~~~~~g~~ 188 (472)
.++++.|+||-|||.. +.+.......... ...-|.+.+-+|...-....+..+ ..++.... . ...
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~--~-----~~~ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR--P-----RDR 129 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC--C-----CCC
Confidence 5799999999999983 2333322222111 112355566667665444334333 33332211 1 011
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcH--HHHHHHHHhC
Q 012059 189 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFR--DQVMQIFRAI 251 (472)
Q Consensus 189 ~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~--~~~~~i~~~~ 251 (472)
..+. -.....++.. -.++++||||+|.++..+.. ..+...++.+
T Consensus 130 ~~~~--------------~~~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 130 VAKL--------------EQQVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred HHHH--------------HHHHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 1100 0011233322 24679999999998765532 3444555555
No 321
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.29 E-value=0.16 Score=46.14 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=26.3
Q ss_pred hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 109 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
..|.-++|.|++|+|||.. ++-++..+.. ..+..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~-~~~~~~~~~~--------~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAF-ALNIAENIAK--------KQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHH-HHHHHHHHHH--------hCCCceEEEe
Confidence 3566799999999999974 4444333332 1256688888
No 322
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.27 E-value=0.087 Score=49.32 Aligned_cols=65 Identities=31% Similarity=0.430 Sum_probs=40.4
Q ss_pred HHHHHCCCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 87 QNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 87 ~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
+.+.+.|. +++-|.+.+..+. .+++++++|+||||||.. +-.++..+.. .....+++++-.+.|+
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~-------~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK-------NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc-------cCCCceEEEECCchhh
Confidence 33444443 4455666665544 677999999999999983 4444444321 1124567887777776
No 323
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.26 E-value=0.03 Score=54.80 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=30.3
Q ss_pred CHHHHHHHhhHhcCC--cEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 98 TPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~--~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
.+.|.+.+..++... =+++.||||||||++ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 677888888877543 488899999999986 6666666543
No 324
>PTZ00293 thymidine kinase; Provisional
Probab=95.25 E-value=0.11 Score=45.37 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
|+=.++.||++||||.-.+ -.+.+... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLL-r~i~~y~~---------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELM-RLVKRFTY---------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHH-HHHHHHHH---------cCCceEEEEec
Confidence 4446889999999997433 33333222 35668888885
No 325
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.22 E-value=0.13 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=17.8
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+++|.||+|+|||.+ +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999985 33344433
No 326
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.17 E-value=0.26 Score=48.89 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=26.8
Q ss_pred HhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 105 IPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 105 i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
+.-+..|.-+++.|+||+|||.. ++-+...+.. ..+..+++++
T Consensus 188 ~~G~~~g~liviag~pg~GKT~~-al~ia~~~a~--------~~g~~v~~fS 230 (421)
T TIGR03600 188 TNGLVKGDLIVIGARPSMGKTTL-ALNIAENVAL--------REGKPVLFFS 230 (421)
T ss_pred hcCCCCCceEEEEeCCCCCHHHH-HHHHHHHHHH--------hCCCcEEEEE
Confidence 33344566789999999999984 4444433321 1245577776
No 327
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.063 Score=54.84 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=15.9
Q ss_pred cEEEEccCCCCcchhhHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPV 132 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~ 132 (472)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999655433
No 328
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.078 Score=54.25 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.2
Q ss_pred cEEEEccCCCCcchhhHHH
Q 012059 113 SLLVSANTGSGKTASFLVP 131 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~ 131 (472)
-.+++||.|+|||.++-+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999865443
No 329
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.13 Score=50.55 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=15.3
Q ss_pred cEEEEccCCCCcchhhHHH
Q 012059 113 SLLVSANTGSGKTASFLVP 131 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~ 131 (472)
.+++.||.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3889999999999865443
No 330
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.2 Score=47.72 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=28.3
Q ss_pred CCHHHHHHHhhHhc--C---CcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 97 PTPVQMQAIPSALS--G---KSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 97 ~~~~Q~~~i~~~~~--~---~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
++|||...+..+.+ + .-.++.||.|.||+..+. .+...++
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~-~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ-HLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH-HHHHHHc
Confidence 47888888888763 3 248899999999998543 3333343
No 331
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.093 Score=55.51 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.0
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
.|+.||.|+|||.++.+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999986433
No 332
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.04 E-value=0.046 Score=50.80 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCcchhhH
Q 012059 111 GKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~ 129 (472)
++.+++.+|||+|||++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468899999999998643
No 333
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.14 Score=52.06 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCcchhhHH
Q 012059 112 KSLLVSANTGSGKTASFLV 130 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l 130 (472)
+.+++.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3488999999999985443
No 334
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.96 E-value=0.049 Score=46.75 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=26.3
Q ss_pred HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHH
Q 012059 108 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 164 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q 164 (472)
+.+++++++.|++|+|||..+ ..+...+.. .+..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~---------~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA-VAIANEAIR---------KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH-HHHHHHHHH---------TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH-HHHHHHhcc---------CCcceeEe-ecCceecc
Confidence 347789999999999999853 334444443 24446654 44555443
No 335
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.96 E-value=0.065 Score=51.55 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=20.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.+..+++++|||||||+. +..++.++.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 345689999999999984 455555554
No 336
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.94 E-value=0.11 Score=48.01 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhhHh----cC-CcEEEEccCCCCcchh
Q 012059 96 MPTPVQMQAIPSAL----SG-KSLLVSANTGSGKTAS 127 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~-~~~iv~a~TGsGKT~~ 127 (472)
.+++.+.+++..+. .+ ..+++.||+|+|||+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 34555666666543 23 3588999999999984
No 337
>PRK06904 replicative DNA helicase; Validated
Probab=94.94 E-value=0.44 Score=47.72 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=56.3
Q ss_pred hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcC-c
Q 012059 109 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG-D 187 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g-~ 187 (472)
..|.=++|.|.||.|||.. .+-+...+.. ..+..+++++.- .-..|+...+-......+ ...+..| .
T Consensus 219 ~~G~LiiIaarPg~GKTaf-alnia~~~a~--------~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~--~~~i~~g~~ 286 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTF-AMNLCENAAM--------ASEKPVLVFSLE-MPAEQIMMRMLASLSRVD--QTKIRTGQN 286 (472)
T ss_pred CCCcEEEEEeCCCCChHHH-HHHHHHHHHH--------hcCCeEEEEecc-CCHHHHHHHHHHhhCCCC--HHHhccCCC
Confidence 3455688899999999984 4444443322 124557777632 333333333222211112 1111122 2
Q ss_pred chHHHH-------HHHhcCCCEEE-----eChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 012059 188 AMARQV-------YRIQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 237 (472)
Q Consensus 188 ~~~~~~-------~~~~~~~~I~i-----~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~ 237 (472)
...+.+ ..+....++.| .|+..+.....+.......+++||||=.+.+..
T Consensus 287 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 287 LDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 222222 12223345666 355555443332111122578999999987753
No 338
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.13 Score=52.54 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=14.8
Q ss_pred EEEEccCCCCcchhhHHH
Q 012059 114 LLVSANTGSGKTASFLVP 131 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~ 131 (472)
.++.||.|+|||.++.+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~l 55 (584)
T PRK14952 38 YLFSGPRGCGKTSSARIL 55 (584)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999865443
No 339
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.1 Score=53.25 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=14.7
Q ss_pred cEEEEccCCCCcchhhHH
Q 012059 113 SLLVSANTGSGKTASFLV 130 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l 130 (472)
-+|+.||.|.|||..+.+
T Consensus 40 A~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999986544
No 340
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.88 E-value=0.22 Score=46.30 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999865
No 341
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.21 Score=51.66 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.6
Q ss_pred cEEEEccCCCCcchhhHH
Q 012059 113 SLLVSANTGSGKTASFLV 130 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l 130 (472)
.+|+.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986443
No 342
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.87 E-value=0.72 Score=44.38 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=62.2
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 190 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 190 (472)
.+.+-+.|+.|.|||+ ++-++...+.. ..+.+ ++..+...++++.+..+. ++...-
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~-------~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI-------KRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPL 117 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc-------ccccc----ccccHHHHHHHHHHHHHh-----------CCCccH
Confidence 4679999999999998 44444332210 11222 144456666677776664 111100
Q ss_pred HHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--CCCceEeecccccHHH
Q 012059 191 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEV 267 (472)
Q Consensus 191 ~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~ 267 (472)
..+.+.+ .....++.+||+|- .+.+-.-.+..++..+ ...-+|+.|.+.|+++
T Consensus 118 -----------------~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 118 -----------------PQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -----------------HHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0111222 22345899999994 3444344555666666 5677888888888654
No 343
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.85 E-value=0.2 Score=48.42 Aligned_cols=91 Identities=14% Similarity=0.273 Sum_probs=50.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.-+++.+++|+|||... +-+...+.. .+.+++|+.-. +-..|+.....++.-.. ....+...
T Consensus 81 ~GslvLI~G~pG~GKStLl-lq~a~~~a~---------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~e--- 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLL-LQVAARLAK---------RGGKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLAE--- 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHh---------cCCeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEcc---
Confidence 3566899999999999843 333333322 24568888653 33455555555553211 11111111
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
...+.+.+.+.. ...++||||+++.+.
T Consensus 145 ---------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ---------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ---------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 122344444432 246799999999875
No 344
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.2 Score=51.62 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=15.4
Q ss_pred cEEEEccCCCCcchhhHHH
Q 012059 113 SLLVSANTGSGKTASFLVP 131 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~ 131 (472)
..|+.||.|.|||.++.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999865443
No 345
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.12 Score=53.42 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.0
Q ss_pred cEEEEccCCCCcchhhHH
Q 012059 113 SLLVSANTGSGKTASFLV 130 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l 130 (472)
.+|+.||.|+|||.++.+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 479999999999986544
No 346
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.82 E-value=0.59 Score=45.79 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=31.3
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCHHHHHHHHHHHHHHhcCCCCeEEEE
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALV 183 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 183 (472)
-+++++++|+|||++..-.+. .+.. .+.++++++ +.|.-|. ++++.++...++.+...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~---------~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~ 161 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR---------KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGS 161 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH---------CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEee
Confidence 377899999999986443332 2222 244566665 3444333 33444444444444433
No 347
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.13 Score=52.00 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.2
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
+++.||.|+|||..+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999986443
No 348
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.80 E-value=0.34 Score=44.71 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=29.0
Q ss_pred CCeeEEEEeccchhhhc-CcHHHHHHHHHhC-------CCCceEeecccccHHHHHHHhhh
Q 012059 222 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI-------SLPQILMYSATISQEVEKMSSSI 274 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~-------~~~~~i~~SAT~~~~~~~~~~~~ 274 (472)
.++++|++|=+-+.... ....++..+.... +...++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45778888888765321 1233444444332 34557788888765443433433
No 349
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.77 E-value=0.035 Score=56.72 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=72.6
Q ss_pred CCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHH-HHHHHH
Q 012059 96 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE-EQAKLL 172 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~ 172 (472)
..+|||.+.+..+-.. +.+.+..++-+|||.+.+. ++-+.+. .....++++.||..+|..+. ..+..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~--------~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSID--------QDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEE--------eCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5689999999888744 5799999999999995433 3333222 12345999999999999865 455555
Q ss_pred hcCCCCeEEEEEc----CcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 173 GKGLPFKTALVVG----GDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 173 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
.+..+.-...+.. ..........+ .+..+.++.... ...+.-..++++++||++.+-
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t~~~k~f-~gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNTILYKRF-PGGFLYLVGANS------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCchhheec-CCCEEEEEeCCC------CcccccCCcCEEEEechhhcc
Confidence 5443311111111 00001111111 233444443211 122334467899999999984
No 350
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.76 E-value=0.38 Score=43.17 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=31.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.|.-+++.+++|+|||+..+- ++..+.. .+.++++++.. +-..+..+.+..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~-~~~~~~~---------~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQR-LAYGFLQ---------NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHh---------CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 467799999999999985333 3333322 34567888743 33344445554443
No 351
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.14 Score=48.32 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=27.4
Q ss_pred CCHHHHHHHhhHh----cCC---cEEEEccCCCCcchhhHHHHHHHHh
Q 012059 97 PTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 97 ~~~~Q~~~i~~~~----~~~---~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.+|||...+..+. +|+ -.++.||.|.||+..+. .+...++
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~-~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR-ALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH-HHHHHHc
Confidence 4678888877765 443 47799999999998543 3334443
No 352
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.22 Score=47.03 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
+.+++.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6799999999999984
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=94.65 E-value=0.41 Score=47.09 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.3
Q ss_pred cEEEEccCCCCcchhhHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPV 132 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~ 132 (472)
-+++++++|+|||++..-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37889999999998654333
No 354
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.15 Score=52.35 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.7
Q ss_pred cEEEEccCCCCcchhhHHH
Q 012059 113 SLLVSANTGSGKTASFLVP 131 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~ 131 (472)
.+|+.||.|+|||.++.+.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999865443
No 355
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.57 E-value=0.049 Score=51.82 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=29.6
Q ss_pred HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 108 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
+..+++++++|+||||||.. +-.++..+ ....+++.+-.+.||
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i----------~~~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI----------PPQERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc----------CCCCCEEEECCCccc
Confidence 33788999999999999983 34444332 224457777777776
No 356
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.18 Score=50.30 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=62.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCHHHHHHHHHHHHHHhcCCCCeEEEEEcCc
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVVGGD 187 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~ 187 (472)
.|+.+.+.||||+|||+.....+...... ..+.++.++. +.+.-+. +.+..++..+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~--------~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~----- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ--------HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE----- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCceEEEecccccccHH---HHHHHhhcccCceeEe-----
Confidence 56778899999999998643333222111 1223454443 2233222 3344444333332211
Q ss_pred chHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcC-cHHHHHHHHHhCCCCceEeeccccc-H
Q 012059 188 AMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAISLPQILMYSATIS-Q 265 (472)
Q Consensus 188 ~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~~~~~~i~~SAT~~-~ 265 (472)
..+++.+...+.. +.++++|+||.+-...... ...++..+........++.++++.. .
T Consensus 413 ----------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~ 472 (559)
T PRK12727 413 ----------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFS 472 (559)
T ss_pred ----------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChh
Confidence 1133344444442 3457899999998643211 1122322222224455667777654 3
Q ss_pred HHHHHHhh
Q 012059 266 EVEKMSSS 273 (472)
Q Consensus 266 ~~~~~~~~ 273 (472)
++....+.
T Consensus 473 Dl~eii~~ 480 (559)
T PRK12727 473 DLDEVVRR 480 (559)
T ss_pred HHHHHHHH
Confidence 34444433
No 357
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.094 Score=49.70 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
+|++..+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7899999999999984
No 358
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.47 E-value=0.23 Score=45.55 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=67.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC---HHHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT---RELCIQVEEQAKLLGKGLPFKTALVVGG 186 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt---~~L~~q~~~~~~~~~~~~~~~~~~~~~g 186 (472)
.|.=+++.|.||.|||..+ +-+...+.. ..+..+++++.- .+++.. .+.... ..+. ..+..+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~-l~ia~~~a~--------~~~~~vly~SlEm~~~~l~~R---~la~~s-~v~~--~~i~~g 82 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFA-LQIALNAAL--------NGGYPVLYFSLEMSEEELAAR---LLARLS-GVPY--NKIRSG 82 (259)
T ss_dssp TT-EEEEEESTTSSHHHHH-HHHHHHHHH--------TTSSEEEEEESSS-HHHHHHH---HHHHHH-TSTH--HHHHCC
T ss_pred cCcEEEEEecccCCchHHH-HHHHHHHHH--------hcCCeEEEEcCCCCHHHHHHH---HHHHhh-cchh--hhhhcc
Confidence 4456899999999999854 444444333 224678888842 333332 222221 1111 111112
Q ss_pred cchHHHHHHH------hcCCCEEE-e----ChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc----CcHHHHHHHHHhC
Q 012059 187 DAMARQVYRI------QQGVELIV-G----TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR----GFRDQVMQIFRAI 251 (472)
Q Consensus 187 ~~~~~~~~~~------~~~~~I~i-~----Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~----~~~~~~~~i~~~~ 251 (472)
.........+ .....++| . |++.+...+.........+++||||=.|.+... +....+..+...+
T Consensus 83 ~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~L 162 (259)
T PF03796_consen 83 DLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISREL 162 (259)
T ss_dssp GCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 2222222221 12233443 3 444555555432222267899999999988663 2344454443333
Q ss_pred ------CCCceEeecc
Q 012059 252 ------SLPQILMYSA 261 (472)
Q Consensus 252 ------~~~~~i~~SA 261 (472)
.+..++++|-
T Consensus 163 k~lA~~~~i~vi~~sQ 178 (259)
T PF03796_consen 163 KALAKELNIPVIALSQ 178 (259)
T ss_dssp HHHHHHHTSEEEEEEE
T ss_pred HHHHHHcCCeEEEccc
Confidence 3445555554
No 359
>PRK04195 replication factor C large subunit; Provisional
Probab=94.47 E-value=0.25 Score=49.83 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999853
No 360
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.40 E-value=1.2 Score=38.40 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=74.6
Q ss_pred hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcc
Q 012059 109 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDA 188 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~ 188 (472)
....++++..++|.|||.+++-.++..+ +.+.+|+++-=.+--. -+.+...+....++.... .|..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~----------g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~ 85 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV----------GHGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTG 85 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH----------HCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCC
Confidence 3567899999999999998766666554 3467788776333210 012222222111222221 1211
Q ss_pred hHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCc--HHHHHHHHHhCCCCceEeecc-cccH
Q 012059 189 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSA-TISQ 265 (472)
Q Consensus 189 ~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~--~~~~~~i~~~~~~~~~i~~SA-T~~~ 265 (472)
..-. ....+--.......++... ..+.-..+++||+||+-..++.++ ...+..++...+...-+.+|+ ..|+
T Consensus 86 ~~~~----~~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 86 FTWE----TQDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred Cccc----CCCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 0000 0000000001111111111 112235689999999999888774 466777777766655555555 4667
Q ss_pred HHHHHHh
Q 012059 266 EVEKMSS 272 (472)
Q Consensus 266 ~~~~~~~ 272 (472)
++.+.+.
T Consensus 161 ~Lie~AD 167 (191)
T PRK05986 161 ELIEAAD 167 (191)
T ss_pred HHHHhCc
Confidence 6666554
No 361
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.40 E-value=0.2 Score=54.25 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCCcEEE
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 394 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gidi~~~~~VI 394 (472)
.+.+++|.++++..|...++.+++. .+..+..++|..+..++..+++.+.+|+.+|+|+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3468999999999999988877642 356788899999999999999999999999999998 455667888898888
Q ss_pred Ee
Q 012059 395 IF 396 (472)
Q Consensus 395 ~~ 396 (472)
.-
T Consensus 579 ID 580 (926)
T TIGR00580 579 ID 580 (926)
T ss_pred ee
Confidence 63
No 362
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.40 E-value=0.15 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=18.0
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+++|.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 34444444
No 363
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.13 Score=50.53 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCCCeeEEEEeccchhhhc--------C-cHHHHHHHHHhC------CCCceEeeccc
Q 012059 220 ELDDIRMFVLDEVDCMLQR--------G-FRDQVMQIFRAI------SLPQILMYSAT 262 (472)
Q Consensus 220 ~~~~~~~iVvDE~h~~~~~--------~-~~~~~~~i~~~~------~~~~~i~~SAT 262 (472)
.-+.+..||+||.|.+... + ....+.+++.++ ++.-+|+||.-
T Consensus 321 ~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR 378 (744)
T KOG0741|consen 321 ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR 378 (744)
T ss_pred ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc
Confidence 3567889999999987631 1 235666777776 56677788754
No 364
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.29 Score=49.38 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=13.8
Q ss_pred EEEEccCCCCcchhhH
Q 012059 114 LLVSANTGSGKTASFL 129 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~ 129 (472)
+++.||+|+|||.++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999998644
No 365
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.36 E-value=0.12 Score=47.57 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=25.1
Q ss_pred CHHHHHHHhhHh--cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 98 TPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 98 ~~~Q~~~i~~~~--~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+.|.+.+..++ .+..+++.++||||||.. +..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 444666665554 334689999999999984 44454443
No 366
>PRK08840 replicative DNA helicase; Provisional
Probab=94.36 E-value=0.57 Score=46.77 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=26.4
Q ss_pred HHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 104 AIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 104 ~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
.+.-+..|.-+++.|.||.|||.-+ +-+...+.. ..+..++|+.
T Consensus 210 ~~~G~~~g~LiviaarPg~GKTafa-lnia~~~a~--------~~~~~v~~fS 253 (464)
T PRK08840 210 KTAGLQGSDLIIVAARPSMGKTTFA-MNLCENAAM--------DQDKPVLIFS 253 (464)
T ss_pred hhcCCCCCceEEEEeCCCCchHHHH-HHHHHHHHH--------hCCCeEEEEe
Confidence 3333445566888999999999843 333333321 1245577776
No 367
>PRK07004 replicative DNA helicase; Provisional
Probab=94.34 E-value=0.29 Score=48.83 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=53.8
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc---CCHHHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT---PTRELCIQVEEQAKLLGKGLPFKTALVVGG 186 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~---Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g 186 (472)
.|.-++|.|.||+|||.. .+-+..++.. ..+..+++++ +..+|+..+ +...+ ++....+..|
T Consensus 212 ~g~liviaarpg~GKT~~-al~ia~~~a~--------~~~~~v~~fSlEM~~~ql~~R~---la~~~---~v~~~~i~~g 276 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAF-SMNIGEYVAV--------EYGLPVAVFSMEMPGTQLAMRM---LGSVG---RLDQHRMRTG 276 (460)
T ss_pred CCceEEEEeCCCCCccHH-HHHHHHHHHH--------HcCCeEEEEeCCCCHHHHHHHH---HHhhc---CCCHHHHhcC
Confidence 456688899999999984 4444433321 1245576665 333343322 22221 1111111112
Q ss_pred cchHHHHHH------HhcCCCEEEe-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 187 DAMARQVYR------IQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 187 ~~~~~~~~~------~~~~~~I~i~-----Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
....+++.. ...+..+.|. |+..+.....+.......+++||||=.+.+.
T Consensus 277 ~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 277 RLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 222222211 1123556663 4444444332211112347899999999885
No 368
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.33 E-value=0.45 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
++++++.|++|+|||.. +.++...+
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 46799999999999974 33333333
No 369
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.22 E-value=0.15 Score=48.54 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=28.6
Q ss_pred hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 109 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
..+++++++|+||||||.. +-.++..+ ....+++.+=-+.||
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~i----------p~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREI----------PAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhC----------CCCCeEEEecCCCcc
Confidence 3788999999999999983 44444433 224566666555565
No 370
>PRK05973 replicative DNA helicase; Provisional
Probab=94.22 E-value=0.1 Score=46.71 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHCCCC----------CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCc
Q 012059 81 LSQKLLQNIEAAGYD----------MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 150 (472)
Q Consensus 81 l~~~i~~~l~~~g~~----------~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 150 (472)
++..+-+.-.+.||. .++| ..+...-+..|.-++|.|++|+|||...+-.+.+.+ . .+.
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~---------~Ge 93 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-K---------SGR 93 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-h---------cCC
Confidence 444444444455664 3455 223444555777899999999999985444343332 2 255
Q ss_pred eEEEEcCCHHHHHHHHHHHHHH
Q 012059 151 LAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
+++|++-- +=..|+.+.+..+
T Consensus 94 ~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 94 TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred eEEEEEEe-CCHHHHHHHHHHc
Confidence 67777632 2244555555555
No 371
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.023 Score=46.65 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=58.2
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 191 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (472)
..+++.+++|+|||+. +.-+...+.+. .-.-.=+++| +.+.=++..+++++.+..|....-
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~--------g~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK--------GYKVGGFITP----------EVREGGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc--------CceeeeEEee----------eeecCCeEeeeEEEEccCCceEEE
Confidence 3589999999999984 66666666541 1122334554 344445556666666664432110
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcC-----CCCCCCeeEEEEeccchhhh--cCcHHHHHHHHH
Q 012059 192 QVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQ--RGFRDQVMQIFR 249 (472)
Q Consensus 192 ~~~~~~~~~~I~i~Tp~~l~~~~~~~-----~~~~~~~~~iVvDE~h~~~~--~~~~~~~~~i~~ 249 (472)
... .....-|+-|....+.+++- .-.+..-++||+||+--|-- ..|...+..++.
T Consensus 67 a~~---~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~ 128 (179)
T COG1618 67 ARV---GFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLK 128 (179)
T ss_pred EEc---CCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhc
Confidence 000 00112222222222222210 00133467999999987642 335566655554
No 372
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.16 E-value=0.56 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCHHHHHHHhhHh--cCC---cEEEEccCCCCcchhhH
Q 012059 97 PTPVQMQAIPSAL--SGK---SLLVSANTGSGKTASFL 129 (472)
Q Consensus 97 ~~~~Q~~~i~~~~--~~~---~~iv~a~TGsGKT~~~~ 129 (472)
.+|||...|..+. .++ ..++.||.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 3788999988877 222 48899999999998543
No 373
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.12 Score=50.36 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=61.8
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|+-+.+.||||+|||+.....+...+.. .+.....++...+.-.+ ..+.+..++..+++.....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~-------~~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v------ 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIR-------HGADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI------ 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC------
Confidence 34568999999999998644333222211 01122344555543221 1233444443334333221
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeeccccc-HH
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATIS-QE 266 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~-~~ 266 (472)
.++..+...+. .+.+.+++++|.+-+.-. .....++..+.... +...++.++||.. +.
T Consensus 255 ---------------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~ 315 (420)
T PRK14721 255 ---------------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT 315 (420)
T ss_pred ---------------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH
Confidence 22333322222 245667899998743211 11122333322211 3345678999964 44
Q ss_pred HHHHHhhh
Q 012059 267 VEKMSSSI 274 (472)
Q Consensus 267 ~~~~~~~~ 274 (472)
+.+....+
T Consensus 316 ~~~~~~~f 323 (420)
T PRK14721 316 LDEVISAY 323 (420)
T ss_pred HHHHHHHh
Confidence 55555444
No 374
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.47 Score=46.25 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecccccHHHH
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVE 268 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~ 268 (472)
...+++||||+|+|.... ...+.+.+..-+...++++++|-+..+.
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECChHHCh
Confidence 467899999999996432 2333344443344455566655454443
No 375
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.37 Score=49.62 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.3
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
.|+.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 41 FLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986544
No 376
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.11 E-value=0.046 Score=49.28 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=12.2
Q ss_pred EEEEccCCCCcchh
Q 012059 114 LLVSANTGSGKTAS 127 (472)
Q Consensus 114 ~iv~a~TGsGKT~~ 127 (472)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999983
No 377
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.10 E-value=1.3 Score=37.01 Aligned_cols=52 Identities=15% Similarity=0.354 Sum_probs=36.2
Q ss_pred CCCeeEEEEeccchhhhcCc--HHHHHHHHHhCCCCc-eEeecccccHHHHHHHh
Q 012059 221 LDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQ-ILMYSATISQEVEKMSS 272 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~--~~~~~~i~~~~~~~~-~i~~SAT~~~~~~~~~~ 272 (472)
...+++||+||+-...+.++ ...+..+++..+... +|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45689999999998877663 466777777765554 55555556777766554
No 378
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.09 E-value=0.13 Score=49.42 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=26.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.+..++++||||||||+. +..++..+.. ..+.+++.+-...++
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~--------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINK--------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCc--------CCCCEEEEEcCChhh
Confidence 456799999999999984 3444443321 223456666544444
No 379
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.08 E-value=0.38 Score=41.66 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.4
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
..+++.||.|+|||..+ ..+...+.
T Consensus 15 ~~~L~~G~~G~gkt~~a-~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA-LALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHc
Confidence 34889999999999853 33444443
No 380
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.06 E-value=0.51 Score=44.72 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=14.1
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
++++.||+|+|||.++
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5999999999999853
No 381
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.04 E-value=0.29 Score=46.57 Aligned_cols=41 Identities=7% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
....++||+||||.|.... ...+...+..-+....+.+++.
T Consensus 107 ~~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 3568899999999986422 3333333333344444444443
No 382
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.01 E-value=0.2 Score=48.78 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=52.5
Q ss_pred HHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHH
Q 012059 85 LLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 164 (472)
Q Consensus 85 i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q 164 (472)
+++.++.. +..+-..|.++.-..-.|.. .+.+=.|||||...++-+.. +. ...+..++++.+-|+.|+.+
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~--lh------~knPd~~I~~Tfftk~L~s~ 221 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE--LH------SKNPDSRIAFTFFTKILAST 221 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH--Hh------cCCCCceEEEEeehHHHHHH
Confidence 34444332 33455668777655556655 67788999999854333322 22 23567789999999999999
Q ss_pred HHHHHHHHh
Q 012059 165 VEEQAKLLG 173 (472)
Q Consensus 165 ~~~~~~~~~ 173 (472)
+.....+|+
T Consensus 222 ~r~lv~~F~ 230 (660)
T COG3972 222 MRTLVPEFF 230 (660)
T ss_pred HHHHHHHHH
Confidence 888777765
No 383
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.00 E-value=0.61 Score=41.84 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=30.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
.|..+++.+++|+|||..++..+...+ . .+..++++.- .+...++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~---------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R---------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h---------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 567899999999999975433333322 2 2445777763 33334444444444
No 384
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.96 E-value=0.083 Score=54.66 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=21.3
Q ss_pred HhcCCcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 108 ALSGKSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
+..|+-+.+.||+|||||+ ++-++.++.+
T Consensus 352 i~~Ge~vaiVG~sGsGKST--l~~LL~r~~~ 380 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKST--LIKLLLRLYD 380 (567)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhccCC
Confidence 4477889999999999987 4455555443
No 385
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.93 E-value=0.2 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=17.8
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
-+++.||.|+|||..+ ..+...++.
T Consensus 47 a~L~~G~~G~GKttlA-~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLA-FHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 4899999999999853 344444443
No 386
>PRK10436 hypothetical protein; Provisional
Probab=93.90 E-value=0.15 Score=50.65 Aligned_cols=38 Identities=37% Similarity=0.524 Sum_probs=25.8
Q ss_pred CHHHHHHHhhHh--cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 98 TPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 98 ~~~Q~~~i~~~~--~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+.|.+.+..++ .+.-+++++|||||||++ +..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 444555565554 445699999999999985 44555554
No 387
>PRK05748 replicative DNA helicase; Provisional
Probab=93.88 E-value=0.77 Score=45.92 Aligned_cols=114 Identities=10% Similarity=0.104 Sum_probs=54.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH-HHHhcCCCCeEEEEEcCcc
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGLPFKTALVVGGDA 188 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~-~~~~~~~~~~~~~~~~g~~ 188 (472)
.|.-++|.|+||.|||.- .+-++..+.. ..+..+++++. .+-..|+...+ ...+ ..+ ...+..|..
T Consensus 202 ~G~livIaarpg~GKT~~-al~ia~~~a~--------~~g~~v~~fSl-Ems~~~l~~R~l~~~~-~v~--~~~i~~~~l 268 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAF-ALNIAQNVAT--------KTDKNVAIFSL-EMGAESLVMRMLCAEG-NID--AQRLRTGQL 268 (448)
T ss_pred CCceEEEEeCCCCCchHH-HHHHHHHHHH--------hCCCeEEEEeC-CCCHHHHHHHHHHHhc-CCC--HHHhhcCCC
Confidence 456689999999999984 4444444321 12445777652 22233333333 2222 111 111112222
Q ss_pred hHHHHHH------HhcCCCEEEe-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 189 MARQVYR------IQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 189 ~~~~~~~------~~~~~~I~i~-----Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
....+.. ...+..+.|. |++.+...+.+.......+++||||=.|.+.
T Consensus 269 ~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 269 TDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2222211 1123455553 4455544333211111257899999999874
No 388
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.87 E-value=0.79 Score=41.30 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=32.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.|.-+++.+++|+|||......+...+. .+.+++++.--.. ..++.+.+..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~----------~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK----------QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh----------CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 3566899999999999854433333221 3566777775333 344555555553
No 389
>PRK08006 replicative DNA helicase; Provisional
Probab=93.85 E-value=0.92 Score=45.42 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=54.8
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.-++|.|.||.|||.- .+-+...+.. ..+..++|++.- .=..|+...+-......+ ...+..|...
T Consensus 223 ~G~LiiIaarPgmGKTaf-alnia~~~a~--------~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~--~~~i~~~~l~ 290 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTF-AMNLCENAAM--------LQDKPVLIFSLE-MPGEQIMMRMLASLSRVD--QTRIRTGQLD 290 (471)
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH--------hcCCeEEEEecc-CCHHHHHHHHHHHhcCCC--HHHhhcCCCC
Confidence 455688899999999984 4444433321 124557777532 222333322222211111 1111222222
Q ss_pred HHHHH-------HHhcCCCEEEe-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 190 ARQVY-------RIQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 190 ~~~~~-------~~~~~~~I~i~-----Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
.+++. .+.....+.|- |+..+.....+.......+++||||=.|.+.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 22222 22234456653 4545544333211112357899999999874
No 390
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.83 E-value=1.1 Score=44.12 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=15.6
Q ss_pred cEEEEccCCCCcchhhHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPV 132 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~ 132 (472)
-+++++++|+|||++..-.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 48889999999998654433
No 391
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.82 E-value=0.2 Score=47.16 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=28.8
Q ss_pred CCCHHHHHHHhhHh----cCC---cEEEEccCCCCcchhhHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~---~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.++|||...+..+. +++ -.++.||.|.||+..+ ..+...++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHc
Confidence 46788888887765 343 4899999999999743 33334443
No 392
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.80 E-value=0.72 Score=45.92 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=24.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
.|.-++|.|+||+|||.. .+-+..++.. ..+..+++++
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~~a~--------~~g~~vl~~S 231 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAENAAI--------KEGKPVAFFS 231 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHHHHH--------hCCCeEEEEe
Confidence 455688999999999974 4444443322 1245577776
No 393
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.2 Score=50.93 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.3
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
.++.||.|+|||.++.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 41 YLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986544
No 394
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.31 Score=49.87 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=14.7
Q ss_pred cEEEEccCCCCcchhhHH
Q 012059 113 SLLVSANTGSGKTASFLV 130 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l 130 (472)
-.++.||.|.|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986443
No 395
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.73 E-value=0.17 Score=48.11 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCHHHHHHHhhHh----cCC---cEEEEccCCCCcchhhHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~---~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.++|||...|..+. +|+ -.++.||.|.||+..+ ..+...++
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHc
Confidence 45788998888775 343 4889999999999854 33344443
No 396
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.62 E-value=0.43 Score=49.48 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCcchhhHH
Q 012059 112 KSLLVSANTGSGKTASFLV 130 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l 130 (472)
..+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999986443
No 397
>PRK13764 ATPase; Provisional
Probab=93.62 E-value=0.15 Score=52.17 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.++++++++|||||||+. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999984 44555444
No 398
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.15 Score=52.53 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.4
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
++++||.|+|||.++.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986544
No 399
>PRK08506 replicative DNA helicase; Provisional
Probab=93.57 E-value=0.76 Score=46.14 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=54.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.-+++.|.||.|||.. .+-+...+.. .+..+++++. ..=..|+...+-......+... +..|...
T Consensus 191 ~G~LivIaarpg~GKT~f-al~ia~~~~~---------~g~~V~~fSl-EMs~~ql~~Rlla~~s~v~~~~--i~~~~l~ 257 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTL-CLNMALKALN---------QDKGVAFFSL-EMPAEQLMLRMLSAKTSIPLQN--LRTGDLD 257 (472)
T ss_pred CCceEEEEcCCCCChHHH-HHHHHHHHHh---------cCCcEEEEeC-cCCHHHHHHHHHHHhcCCCHHH--HhcCCCC
Confidence 456688899999999984 4444444332 2445777753 2233333333322211222111 1112221
Q ss_pred HHHH-------HHHhcCCCEEEe-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 190 ARQV-------YRIQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 190 ~~~~-------~~~~~~~~I~i~-----Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
...+ ..+. +..+.|- |+..+...+.+.......+++||||=.+.+.
T Consensus 258 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 258 DDEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 2222 1222 3345552 4555544433211112357899999999775
No 400
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.57 E-value=0.089 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|+-+.+.||+|||||+ ++-++..+
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 78889999999999998 44444443
No 401
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.046 Score=50.04 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=19.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
+..|+++.+|||||||+.+ --++.+++
T Consensus 96 ~KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 5568999999999999844 33444443
No 402
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.47 E-value=0.069 Score=47.59 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
-++++++|||||+.+
T Consensus 129 LviiVGaTGSGKSTt 143 (375)
T COG5008 129 LVIIVGATGSGKSTT 143 (375)
T ss_pred eEEEECCCCCCchhh
Confidence 388899999999986
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.44 E-value=3.6 Score=34.95 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.3
Q ss_pred EEEEccCCCCcchhhH
Q 012059 114 LLVSANTGSGKTASFL 129 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~ 129 (472)
+++.+++|+|||....
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998643
No 404
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.44 E-value=0.78 Score=44.46 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=59.0
Q ss_pred EEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCC-ceEEEEcCCHH-HHHHHH---HHHHHHhcC-CCCeEEEEEcCcc
Q 012059 115 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN-PLAMVLTPTRE-LCIQVE---EQAKLLGKG-LPFKTALVVGGDA 188 (472)
Q Consensus 115 iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~-~~~lil~Pt~~-L~~q~~---~~~~~~~~~-~~~~~~~~~~g~~ 188 (472)
++.++.|+|||.+....++..+.. ..+ ..++++ ++.. +...+. ..+..+... .............
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~--------~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT--------RPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS--------SSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhh--------CCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE
Confidence 478899999999877777766654 222 445555 6554 444322 233333333 1111111111111
Q ss_pred hHHHHHHHhcCCCEEEeChHHH--HHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecccc--c
Q 012059 189 MARQVYRIQQGVELIVGTPGRL--IDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI--S 264 (472)
Q Consensus 189 ~~~~~~~~~~~~~I~i~Tp~~l--~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~--~ 264 (472)
.. ..+..|.+.+.+.- ..-+. -..++++++||+-.+.+..+...+............+.+|.|. .
T Consensus 72 ~~------~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~ 140 (384)
T PF03237_consen 72 IL------PNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTPPNPG 140 (384)
T ss_dssp EE------TTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SS
T ss_pred Ee------cCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecCCCCC
Confidence 10 23445666653221 11111 1457799999988775443333333333332323222444432 2
Q ss_pred HHHHHHHhhhcC
Q 012059 265 QEVEKMSSSISK 276 (472)
Q Consensus 265 ~~~~~~~~~~~~ 276 (472)
..+..+......
T Consensus 141 ~~~~~~~~~~~~ 152 (384)
T PF03237_consen 141 GWFYEIFQRNLD 152 (384)
T ss_dssp SHHHHHHHHHHC
T ss_pred Cceeeeeehhhc
Confidence 334444443333
No 405
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.41 E-value=2 Score=40.07 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCC----CCceEeecccc
Q 012059 208 GRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS----LPQILMYSATI 263 (472)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~----~~~~i~~SAT~ 263 (472)
..++..+..+....+.--.+|+||+|....+.....+..++.... +.-++++|..+
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 344555555444333335789999998877766666666666552 33455665544
No 406
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.36 E-value=0.16 Score=52.15 Aligned_cols=156 Identities=16% Similarity=0.170 Sum_probs=92.4
Q ss_pred CCCCHHHHHHHhhHh--------cCC--cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHH
Q 012059 95 DMPTPVQMQAIPSAL--------SGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 164 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~--------~~~--~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q 164 (472)
..+...|.+++-++- +|. .++|....|-||--+..-.|++..+. ..+++|++.-+..|--.
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk---------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK---------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc---------ccceeEEEEeccccccc
Confidence 356778888886654 333 37776666666654333334444333 46789999998888666
Q ss_pred HHHHHHHHhcCCCCeEEEEEcC---cchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC------------CCCCe-eEEE
Q 012059 165 VEEQAKLLGKGLPFKTALVVGG---DAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI------------ELDDI-RMFV 228 (472)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~------------~~~~~-~~iV 228 (472)
..+.++.++.. ++.+..+.-- ....+... .-.-.|+++|+..|+---..... .-.++ ++||
T Consensus 334 AERDL~DigA~-~I~V~alnK~KYakIss~en~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIv 410 (1300)
T KOG1513|consen 334 AERDLRDIGAT-GIAVHALNKFKYAKISSKENT--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIV 410 (1300)
T ss_pred hhhchhhcCCC-CccceehhhcccccccccccC--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEE
Confidence 66666666432 3443332110 00000000 01135999999777543321110 01122 5899
Q ss_pred Eeccchhhhc---------CcHHHHHHHHHhCCCCceEeeccc
Q 012059 229 LDEVDCMLQR---------GFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 229 vDE~h~~~~~---------~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
+||||+..+. .....+..+-+.+++.+++.-|||
T Consensus 411 fDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASAT 453 (1300)
T KOG1513|consen 411 FDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASAT 453 (1300)
T ss_pred ehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeecc
Confidence 9999986541 145677788888999999999999
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.35 E-value=0.17 Score=43.73 Aligned_cols=31 Identities=39% Similarity=0.494 Sum_probs=24.7
Q ss_pred CCHHHHHHHhhHh-cCCcEEEEccCCCCcchh
Q 012059 97 PTPVQMQAIPSAL-SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 97 ~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~ 127 (472)
+.+-|.+.+.... .++.+++.+|||||||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566777776655 778999999999999984
No 408
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.33 Score=49.10 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhh
Q 012059 68 AVPAPILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 68 ~~p~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~ 128 (472)
.++.|..+|++.|=-+++.+.|++. +...|-.+.+-. +-.-+.+++.+|+|+|||+++
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 4567788899988556666555532 222332222222 123477999999999999854
No 409
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.16 E-value=0.23 Score=52.59 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=58.6
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhc---C-CeEEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-cccCC-CC--C
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTT---G-MKALS-IHGEKPMKERREIMRSFLVGEVPVIVATGIL-GRGVE-LL--G 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~---~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gid-i~--~ 389 (472)
.+.++++.++|..-+.+.++.|.+.. + ..+.. +|+.++.++++++++.|.+|..+|||+|..+ ..-.+ +. .
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~k 203 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLK 203 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccC
Confidence 44789999999998888888887321 2 44333 9999999999999999999999999999853 33333 22 3
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
.++|+.-|
T Consensus 204 FdfifVDD 211 (1187)
T COG1110 204 FDFIFVDD 211 (1187)
T ss_pred CCEEEEcc
Confidence 55666544
No 410
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=0.19 Score=51.41 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecc
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 261 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SA 261 (472)
+.+...+|+|||-..+|-..+..+.+.+.++...+++++=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe
Confidence 55677899999999888877888888887764446555533
No 411
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.09 E-value=0.44 Score=42.92 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=67.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC----CcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccc-cCCCcc
Q 012059 345 GMKALSIHGEKPMKERREIMRSFLVGE----VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS-QMGDEG 419 (472)
Q Consensus 345 ~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~-R~g~~g 419 (472)
+..+..++++.+... -.|.++. ..|+|+-+.++||+.++++.+-.....+...+++.||.=--| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466777776554322 2333333 778999999999999999999999999998888888753333 777778
Q ss_pred eEEEEEcCCChHHHHHHHHHHHH
Q 012059 420 TAIVFVNEENKNLFQELVDILKS 442 (472)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~l~~ 442 (472)
.|-+++++.-...+..+.+.-+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~~e~ 207 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEAEEE 207 (239)
T ss_pred ceEEecCHHHHHHHHHHHHHHHH
Confidence 89999988877666666655444
No 412
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.07 E-value=0.5 Score=45.61 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|+.+++.+|+|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 788999999999999974
No 413
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.06 E-value=0.32 Score=47.49 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
.+.+++.||+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 36799999999999984
No 414
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.05 E-value=0.095 Score=51.25 Aligned_cols=48 Identities=31% Similarity=0.360 Sum_probs=36.2
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
++++.||||||||.++++|-+.. ....++|+=|.-++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------------~~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------------WPGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------------CCCCEEEEccchhHHHHHHHHHHHc
Confidence 47899999999999998887642 1345888889989987665555443
No 415
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.04 E-value=2.1 Score=45.00 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=66.5
Q ss_pred CEEEEECCchhHHHHHHHHhh-----hc-CCeEEEEcCCCCHHHHHHHHHHHhcC--------CCcEEEEeccccccCCC
Q 012059 322 PAVVYVGSRLGADLLSNAISV-----TT-GMKALSIHGEKPMKERREIMRSFLVG--------EVPVIVATGILGRGVEL 387 (472)
Q Consensus 322 ~~lIf~~~~~~~~~l~~~L~~-----~~-~~~~~~~~~~~~~~~r~~~~~~f~~g--------~~~vLvaT~~~~~Gidi 387 (472)
..|||.++....+.+...+.. .. +.+- .+.+--+..+-.+++..|.+. ..-..||-...++|+|+
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 499999999888777554441 11 1111 222222444555666666532 23345777789999999
Q ss_pred CC--CcEEEEecCCC--------------------------------------CHhHHHHhhcccccCCCcceEEEEEcC
Q 012059 388 LG--VRQVIIFDMPN--------------------------------------SIKEYVHQIGRASQMGDEGTAIVFVNE 427 (472)
Q Consensus 388 ~~--~~~VI~~~~p~--------------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 427 (472)
.+ .+.||..+.|. -....-|.+||+-|.-++=.++++++.
T Consensus 642 sD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D~ 721 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCDD 721 (945)
T ss_pred cccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEeec
Confidence 75 68899877665 123347999999998776444456654
Q ss_pred C
Q 012059 428 E 428 (472)
Q Consensus 428 ~ 428 (472)
.
T Consensus 722 R 722 (945)
T KOG1132|consen 722 R 722 (945)
T ss_pred h
Confidence 3
No 416
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=93.04 E-value=0.61 Score=44.85 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHhcCceeeCCCC-CCcccCcccC-------CCCHHHHHHHHHC-CCCCCCHHHHHH-------------
Q 012059 47 SLTIGQTDSLRKRLEINVKGDAV-PAPILSFSSC-------SLSQKLLQNIEAA-GYDMPTPVQMQA------------- 104 (472)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~-------~l~~~i~~~l~~~-g~~~~~~~Q~~~------------- 104 (472)
=+++.++..+.-+.+-.+.|.-- |++-..|..+ +.+++-...-..+ ..+.++|.++..
T Consensus 80 yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rv 159 (416)
T PRK09376 80 YVSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNPEDLSTRI 159 (416)
T ss_pred eeCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccccCCCCcccceee
Confidence 35777888887777766766532 2222222211 3334333221111 122333344333
Q ss_pred HhhHh---cCCcEEEEccCCCCcchh
Q 012059 105 IPSAL---SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 105 i~~~~---~~~~~iv~a~TGsGKT~~ 127 (472)
+..+. .|+..+|.||.|+|||..
T Consensus 160 ID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 160 IDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred eeeecccccCceEEEeCCCCCChhHH
Confidence 33333 788999999999999973
No 417
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.02 E-value=0.67 Score=51.59 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCCcEEE
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 394 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gidi~~~~~VI 394 (472)
.+.+++|.++++..+...+..+.+.. +..+..++|..+..++..+++...+|..+|+|+|. .+...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 45689999999999999988876422 46778899999999999999999999999999997 444556777888887
Q ss_pred E
Q 012059 395 I 395 (472)
Q Consensus 395 ~ 395 (472)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 418
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=1 Score=43.44 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=17.9
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
-.++.||.|+||+..+ ..+...++.
T Consensus 43 A~Lf~Gp~G~GK~~lA-~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLA-YRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhC
Confidence 4899999999999853 444444443
No 419
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.85 Score=45.10 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=27.9
Q ss_pred CeeEEEEeccchhhhcC------c-HHHHHHHHHhC----CCCceEeeccccc
Q 012059 223 DIRMFVLDEVDCMLQRG------F-RDQVMQIFRAI----SLPQILMYSATIS 264 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~------~-~~~~~~i~~~~----~~~~~i~~SAT~~ 264 (472)
..+.|.+||.|.+.... + ..-+.+++..+ ++.-+|.+.||--
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 35689999999887542 1 12334444444 6778999999954
No 420
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.94 E-value=0.76 Score=48.02 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=14.3
Q ss_pred EEEEccCCCCcchhhHH
Q 012059 114 LLVSANTGSGKTASFLV 130 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l 130 (472)
.|+.||.|.|||.++.+
T Consensus 43 YLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 68999999999986543
No 421
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.85 E-value=1.2 Score=37.94 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=36.7
Q ss_pred CCeeEEEEeccchhhhcCc--HHHHHHHHHhCCCCceEeeccc-ccHHHHHHHh
Q 012059 222 DDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSAT-ISQEVEKMSS 272 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~--~~~~~~i~~~~~~~~~i~~SAT-~~~~~~~~~~ 272 (472)
..+++||+||.-..+..++ .+.+..++..-|..+-+.+|+. .|+.+.+++.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 3689999999998887763 4666777776677666666665 5666666554
No 422
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.83 E-value=0.18 Score=47.43 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHh-hHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 94 YDMPTPVQMQAIP-SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 94 ~~~~~~~Q~~~i~-~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
+..+.+.|..-+- .+..+++++++++||||||. ++.+++..+ ....+++.+=-|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I----------p~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI----------PPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC----------CchhcEEEEeccccc
Confidence 3345555655544 44588999999999999998 355555433 234557777666665
No 423
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.81 E-value=2.1 Score=36.24 Aligned_cols=140 Identities=12% Similarity=0.176 Sum_probs=62.8
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV 193 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (472)
+.|--..|=|||.+++-.++..+ +.+.+|+++-=.+.- ..+.+...+...-++.... .|.......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~----------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~--~g~~f~~~~ 71 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA----------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIER--FGKGFVWRM 71 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH----------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE----TT----G
T ss_pred EEEEeCCCCCchHHHHHHHHHHH----------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEE--cCCcccccC
Confidence 55666789999998776666554 567889998755441 1123333332221222221 111110000
Q ss_pred HHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCc--HHHHHHHHHhCCCCceEeecc-cccHHHHHH
Q 012059 194 YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSA-TISQEVEKM 270 (472)
Q Consensus 194 ~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~--~~~~~~i~~~~~~~~~i~~SA-T~~~~~~~~ 270 (472)
..-. .+ .......++... ..+.-..+++||+||+-...+.++ ...+..++..-+...-+.+|+ .+|+.+.+.
T Consensus 72 ~~~~--~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 72 NEEE--ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp GGHH--HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred CCcH--HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 0000 00 001111122211 122345789999999999888774 466777777665555455554 566667665
Q ss_pred Hh
Q 012059 271 SS 272 (472)
Q Consensus 271 ~~ 272 (472)
+.
T Consensus 147 AD 148 (172)
T PF02572_consen 147 AD 148 (172)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 424
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.79 E-value=0.26 Score=44.58 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCcchhhH
Q 012059 112 KSLLVSANTGSGKTASFL 129 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~ 129 (472)
.++++.+|+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 469999999999998543
No 425
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.74 E-value=0.86 Score=46.09 Aligned_cols=18 Identities=22% Similarity=0.665 Sum_probs=14.5
Q ss_pred CCCeeEEEEeccchhhhc
Q 012059 221 LDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~ 238 (472)
....+++|+||+|.+...
T Consensus 115 ~~~~KVvIIDEad~Lt~~ 132 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE 132 (535)
T ss_pred cCCeEEEEEECcccCCHH
Confidence 357889999999998643
No 426
>PF05729 NACHT: NACHT domain
Probab=92.70 E-value=1 Score=37.69 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=16.7
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHh
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
-++|.|++|+|||.. +.-+...+.
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHH
Confidence 478999999999984 333443433
No 427
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.66 E-value=1.4 Score=37.25 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCCeeEEEEeccchhhhcCc--HHHHHHHHHhCCCCceEeec-ccccHHHHHHHh
Q 012059 221 LDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYS-ATISQEVEKMSS 272 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~--~~~~~~i~~~~~~~~~i~~S-AT~~~~~~~~~~ 272 (472)
-..+++||+||+-...+.++ ...+..++...+...-+.+| -..|+.+.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35689999999998888774 45666777766655444454 456776766554
No 428
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.64 E-value=0.18 Score=51.74 Aligned_cols=44 Identities=34% Similarity=0.465 Sum_probs=29.6
Q ss_pred HHHCCCCCCCHHHHHHHhhHhc--CCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~~--~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
+.+.|+ .+-|.+.+..++. +..++++||||||||++ +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 344554 4567777766653 45688999999999985 44555544
No 429
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.61 E-value=1.3 Score=47.00 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=26.1
Q ss_pred eEEEEeccchhhhcCc----HHHHHHHHHhC-CCCceEeecccccHHH
Q 012059 225 RMFVLDEVDCMLQRGF----RDQVMQIFRAI-SLPQILMYSATISQEV 267 (472)
Q Consensus 225 ~~iVvDE~h~~~~~~~----~~~~~~i~~~~-~~~~~i~~SAT~~~~~ 267 (472)
.+++|||+|.+...+. ...+..+++.+ ....+.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999865431 23344444433 4556666677765544
No 430
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.57 E-value=0.21 Score=45.10 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.|..++|.|++|+|||..++-.+...+. .+.++++++ +.+-..++.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~----------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4577999999999999855444444332 356688887 3455556666666554
No 431
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.57 E-value=0.45 Score=47.84 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=20.2
Q ss_pred cccccCCCcceEEEEEcCCChHHHHHHHHHHHHc
Q 012059 410 GRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 443 (472)
Q Consensus 410 GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 443 (472)
-++-|.-..|..++.+.....+.+..=.+.++..
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (486)
T PRK14953 408 KNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKY 441 (486)
T ss_pred hhhhhhhhcCceEEEecccHHHHHHHHHHHHHHh
Confidence 3555655668888887766555555444444443
No 432
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.54 E-value=0.068 Score=45.73 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHhcCCCEEEeChHHHHHHHHcCCC--CCCCeeEEEEeccchhhh
Q 012059 193 VYRIQQGVELIVGTPGRLIDLLMKHDI--ELDDIRMFVLDEVDCMLQ 237 (472)
Q Consensus 193 ~~~~~~~~~I~i~Tp~~l~~~~~~~~~--~~~~~~~iVvDE~h~~~~ 237 (472)
.+.....++|+|+++..|.+-...... ...+-.+|||||||.+.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 344556799999999988765443222 123457899999999864
No 433
>PRK08760 replicative DNA helicase; Provisional
Probab=92.50 E-value=1 Score=45.21 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=54.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.-++|.|.||.|||.. .+-+...+.. ..+..+++++.- .-..|+...+.......+... +..|...
T Consensus 228 ~G~LivIaarPg~GKTaf-al~iA~~~a~--------~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~--i~~g~l~ 295 (476)
T PRK08760 228 PTDLIILAARPAMGKTTF-ALNIAEYAAI--------KSKKGVAVFSME-MSASQLAMRLISSNGRINAQR--LRTGALE 295 (476)
T ss_pred CCceEEEEeCCCCChhHH-HHHHHHHHHH--------hcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHH--HhcCCCC
Confidence 445588899999999984 4444443321 124457776532 223344443333322222111 1122222
Q ss_pred HHHHHH------HhcCCCEEEe-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 190 ARQVYR------IQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 190 ~~~~~~------~~~~~~I~i~-----Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
..++.. ......+.|. |++.+...+.+-.. -..+++||||=.+.+.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 221111 1123455554 34555443332111 1347899999998774
No 434
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.48 E-value=1.2 Score=44.32 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=14.7
Q ss_pred cEEEEccCCCCcchhhHH
Q 012059 113 SLLVSANTGSGKTASFLV 130 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l 130 (472)
..++.||.|+|||.++..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999986433
No 435
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.47 E-value=0.14 Score=51.71 Aligned_cols=50 Identities=34% Similarity=0.434 Sum_probs=38.2
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.++++.||||||||..+++|.+.. . +..++|.-|--+|........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999999997632 1 2258888899899876666665543
No 436
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.46 E-value=1.1 Score=44.54 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=74.0
Q ss_pred cCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH---HHH
Q 012059 119 NTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYR 195 (472)
Q Consensus 119 ~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~ 195 (472)
-.+.||+..-++++.+.+.. +-.|.+||.+-+.+-|.|+++++..+ -++++..++|..+..+. +..
T Consensus 365 lvF~gse~~K~lA~rq~v~~--------g~~PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS--------GFKPPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred heeeecchhHHHHHHHHHhc--------cCCCCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccchhHHHHHHHH
Confidence 35788888877777766544 56788999999999999999888732 34778888887654433 334
Q ss_pred Hhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 012059 196 IQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 234 (472)
Q Consensus 196 ~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~ 234 (472)
++. ...++||| +++.++ .++..+.+||-++...
T Consensus 434 FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 434 FRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 443 47899999 777655 7899999999988764
No 437
>PRK06321 replicative DNA helicase; Provisional
Probab=92.45 E-value=1.7 Score=43.61 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=53.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.=++|.|.+|.|||.- .+-+...+.. ..+..+++++. ..=..|+...+-..... +....+..+...
T Consensus 225 ~G~LiiiaarPgmGKTaf-al~ia~~~a~--------~~g~~v~~fSL-EMs~~ql~~Rlla~~s~--v~~~~i~~~~l~ 292 (472)
T PRK06321 225 PSNLMILAARPAMGKTAL-ALNIAENFCF--------QNRLPVGIFSL-EMTVDQLIHRIICSRSE--VESKKISVGDLS 292 (472)
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHH--------hcCCeEEEEec-cCCHHHHHHHHHHhhcC--CCHHHhhcCCCC
Confidence 345578899999999984 4444444322 12445666652 22223333322222111 211111122222
Q ss_pred HHHHH-------HHhcCCCEEEe-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 190 ARQVY-------RIQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 190 ~~~~~-------~~~~~~~I~i~-----Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
.+.+. .+ ....+.|- |.+.+.....+... -..+++||||=.+.+.
T Consensus 293 ~~e~~~~~~a~~~l-~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 293 GRDFQRIVSVVNEM-QEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 22222 22 23456664 44455444333211 1347899999999875
No 438
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.42 E-value=0.13 Score=46.03 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=28.9
Q ss_pred ChHHHHHHHHcCCCCCCCeeEEEEeccchhh-h----cCcHHHHHHHHHhC--CCCceEeecccc
Q 012059 206 TPGRLIDLLMKHDIELDDIRMFVLDEVDCML-Q----RGFRDQVMQIFRAI--SLPQILMYSATI 263 (472)
Q Consensus 206 Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~-~----~~~~~~~~~i~~~~--~~~~~i~~SAT~ 263 (472)
+...+.+.+...... -+||+||+|.+. . ..+...+..++... .....+.++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 445555555543322 589999999998 2 22444555555553 223334455554
No 439
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.40 E-value=2.3 Score=40.34 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=12.3
Q ss_pred cEEEEccCCCCcch
Q 012059 113 SLLVSANTGSGKTA 126 (472)
Q Consensus 113 ~~iv~a~TGsGKT~ 126 (472)
-+-+.++.|+|||+
T Consensus 58 ~igi~G~~GaGKST 71 (332)
T PRK09435 58 RIGITGVPGVGKST 71 (332)
T ss_pred EEEEECCCCCCHHH
Confidence 37789999999997
No 440
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.32 E-value=2.7 Score=39.31 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=67.0
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC--CHHHHHHHHHHHHHHhcCCCCeEEEE-EcCcchH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP--TRELCIQVEEQAKLLGKGLPFKTALV-VGGDAMA 190 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~-~~g~~~~ 190 (472)
+++.+-.|+|||++. --+..++.. .+.++++.+- .|+-|. ++++.+++..+..++.. .|++.-.
T Consensus 142 il~vGVNG~GKTTTI-aKLA~~l~~---------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa 208 (340)
T COG0552 142 ILFVGVNGVGKTTTI-AKLAKYLKQ---------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA 208 (340)
T ss_pred EEEEecCCCchHhHH-HHHHHHHHH---------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH
Confidence 778999999999963 333333332 4666766663 344433 33444444455555542 2322211
Q ss_pred HHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-CcHHHHHHHHHhCCC-------CceEeeccc
Q 012059 191 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAISL-------PQILMYSAT 262 (472)
Q Consensus 191 ~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~~~-------~~~i~~SAT 262 (472)
-. .+-++.. ...++++|++|=|-|+-.. +...++.++.+-+.. .-++.+=||
T Consensus 209 Va------------------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 209 VA------------------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred HH------------------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 11 1112211 2345778888888887543 345555555554411 123444688
Q ss_pred ccHHHHHHHhhh
Q 012059 263 ISQEVEKMSSSI 274 (472)
Q Consensus 263 ~~~~~~~~~~~~ 274 (472)
...+...-++.|
T Consensus 269 tGqnal~QAk~F 280 (340)
T COG0552 269 TGQNALSQAKIF 280 (340)
T ss_pred cChhHHHHHHHH
Confidence 766555544444
No 441
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.22 E-value=0.19 Score=43.99 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=16.1
Q ss_pred EEEEccCCCCcchhhHHHHHHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
+++++|||||||+. +..++..+
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHh
Confidence 78999999999985 34444443
No 442
>PHA00729 NTP-binding motif containing protein
Probab=92.19 E-value=0.43 Score=42.28 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=14.2
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999743
No 443
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.07 E-value=3.1 Score=44.51 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
..|+++.||+|+|||..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999853
No 444
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.04 E-value=0.91 Score=46.18 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHh-CCCCceEee
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRA-ISLPQILMY 259 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~-~~~~~~i~~ 259 (472)
+...+++|+|||-.-+|.+....+...++. ++..-+|-+
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV 570 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEe
Confidence 556789999999998888767666666554 355554444
No 445
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.01 E-value=0.41 Score=45.69 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=39.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 86 LQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 86 ~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
++.+.+.|+ +.+.+.+.+..+. .+++++++++||||||.. +-.++..+ ....+++++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i----------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV----------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC----------CCCCcEEEECCccee
Confidence 344555554 4456667666655 567999999999999983 33333221 123456776666666
No 446
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.01 E-value=0.18 Score=34.42 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
|...++.+++|||||. ++-++..+
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHH
Confidence 4569999999999998 44444443
No 447
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.00 E-value=0.3 Score=50.94 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=29.7
Q ss_pred eeEEEEeccchhhhcCcHHHHHHHHHhCCC-CceEeeccc
Q 012059 224 IRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMYSAT 262 (472)
Q Consensus 224 ~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~-~~~i~~SAT 262 (472)
.=++|+|+.|.+.+......+..++++.+. ...++.|-+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 358999999999888878888888888854 445555544
No 448
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.99 E-value=0.29 Score=49.12 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=28.5
Q ss_pred HHHCCCCCCCHHHHHHHhhHhcC-C-cEEEEccCCCCcchhhHHHHHHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSALSG-K-SLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~~~-~-~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
+...|+ .+-|.+.+..+... + -++++||||||||++ +..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 344444 56677777766643 2 378999999999985 34444443
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.99 E-value=1.1 Score=40.42 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=25.1
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcc--cCCCCCceEEEEc
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHH--SQNQKNPLAMVLT 156 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~--~~~~~~~~~lil~ 156 (472)
-.++.||.|+|||+..+-.++.......+-. .....+.+++|+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 3689999999999865444443222111111 0112456788888
No 450
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=91.97 E-value=0.11 Score=51.70 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=20.8
Q ss_pred HhcCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 108 ALSGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
+.+|++++|++|+|+|||- ++-++.-+
T Consensus 458 V~~g~~LLItG~sG~GKtS--LlRvlggL 484 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTS--LLRVLGGL 484 (659)
T ss_pred ecCCCeEEEECCCCCchhH--HHHHHhcc
Confidence 4489999999999999996 44444433
No 451
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.97 E-value=0.14 Score=47.31 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=29.2
Q ss_pred hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 109 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
..+.+++++|+||||||.. +-.++..+-. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~---------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPP---------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHT---------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhccc---------cccceEEeccccce
Confidence 3578999999999999984 4444544322 13567777776666
No 452
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.94 E-value=0.2 Score=51.43 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=39.2
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
+++++.||||||||..+++|-+... +..++|+=|--++........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5799999999999999999987542 234888889999988776666654
No 453
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.88 E-value=0.73 Score=40.65 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=25.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
.|.-+.+.+|+|+|||...+..+.. ... .+.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~-~~~---------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN-AAR---------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHh---------CCCeEEEEECC
Confidence 4566899999999999854433332 222 24567777754
No 454
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.68 E-value=0.36 Score=45.35 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=28.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
.|+-+.|.+|+|+|||..++ .++..... .+..++++..-..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL-~~~~~~~~---------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLAL-HAIAEAQK---------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHH---------cCCcEEEEcccchhHH
Confidence 45678999999999998544 43333322 3566888765544443
No 455
>PF12846 AAA_10: AAA-like domain
Probab=91.66 E-value=0.25 Score=46.28 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=30.2
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
++++++.|+||+|||.... .++..+.. .+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~---------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR---------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH---------cCCCEEEEcCCchHHH
Confidence 3679999999999998654 55544443 3566888877755544
No 456
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.61 E-value=0.79 Score=47.54 Aligned_cols=41 Identities=15% Similarity=0.355 Sum_probs=24.1
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
+...+++||||+|.+.... ...+...+...+..-++.+.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEeC
Confidence 4578899999999986432 2333334443334344455554
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.59 E-value=0.57 Score=42.51 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCCcch
Q 012059 109 LSGKSLLVSANTGSGKTA 126 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~ 126 (472)
-.|+.+++.+|.|+|||.
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 378999999999999997
No 458
>PRK05595 replicative DNA helicase; Provisional
Probab=91.59 E-value=0.73 Score=45.98 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=24.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.|.-++|.|.||.|||.. .+-+..++.. ..+..++++..
T Consensus 200 ~g~liviaarpg~GKT~~-al~ia~~~a~--------~~g~~vl~fSl 238 (444)
T PRK05595 200 KGDMILIAARPSMGKTTF-ALNIAEYAAL--------REGKSVAIFSL 238 (444)
T ss_pred CCcEEEEEecCCCChHHH-HHHHHHHHHH--------HcCCcEEEEec
Confidence 445578899999999984 4444333221 13556777764
No 459
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.55 E-value=2.1 Score=41.29 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=16.4
Q ss_pred cEEEEccCCCCcchhhHHHHHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+++.||+|+|||..+ ..+...+
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4789999999999753 3343433
No 460
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.43 E-value=1.8 Score=43.15 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=51.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.-+++.+++|+|||+..+ -+...+.. .+.+++|+..- +-..|+...+.+++-. .....+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~l-q~a~~~a~---------~g~kvlYvs~E-Es~~qi~~ra~rlg~~--~~~l~~~~e--- 156 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLL-QVACQLAK---------NQMKVLYVSGE-ESLQQIKMRAIRLGLP--EPNLYVLSE--- 156 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHH-HHHHHHHh---------cCCcEEEEECc-CCHHHHHHHHHHcCCC--hHHeEEcCC---
Confidence 45668999999999998433 33333322 23468888753 3445555555554311 111111110
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 237 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~ 237 (472)
.+.+.+...+... +.++||+|.+..+..
T Consensus 157 ---------------~~~~~I~~~i~~~-----~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 157 ---------------TNWEQICANIEEE-----NPQACVIDSIQTLYS 184 (454)
T ss_pred ---------------CCHHHHHHHHHhc-----CCcEEEEecchhhcc
Confidence 2334555544332 467899999998753
No 461
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.34 E-value=1.1 Score=45.66 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=64.2
Q ss_pred CCCCCEEEEECCchhHH----HHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccccCCCCCCcE
Q 012059 318 HFTPPAVVYVGSRLGAD----LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGRGVELLGVRQ 392 (472)
Q Consensus 318 ~~~~~~lIf~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~~~~ 392 (472)
..+.++..-++|.--|+ .+.++|. ..|+.+..+.|.+....|.++++...+|+++++|.|-+ +...+++.++-.
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 34567889999965554 4555555 56899999999999999999999999999999999986 567899999888
Q ss_pred EEE
Q 012059 393 VII 395 (472)
Q Consensus 393 VI~ 395 (472)
||.
T Consensus 388 VIi 390 (677)
T COG1200 388 VII 390 (677)
T ss_pred EEE
Confidence 886
No 462
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=1.6 Score=41.27 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=31.9
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHh----hHhcCCcEEEEccCCCCcchhh
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIP----SALSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~----~~~~~~~~iv~a~TGsGKT~~~ 128 (472)
.+|.+.+=-+.+.+.|++.-. .|.|.--+- .+...+.+++.+|+|+|||+++
T Consensus 89 v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 567887766677777765411 122221111 1224478999999999999854
No 463
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.33 E-value=4.9 Score=37.90 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=63.7
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 191 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (472)
+.+-+.|+-|.|||. ++-++.+.+-. ..+ .-++...-...+++.+..+... .
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~-------~~k----~R~HFh~FM~~vH~~l~~l~g~------------~--- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG-------ERK----RRLHFHRFMARVHQRLHTLQGQ------------T--- 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc-------ccc----ccccHHHHHHHHHHHHHHHcCC------------C---
Confidence 668999999999997 55555443220 111 2245566667777777776411 0
Q ss_pred HHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--CCCceEeecccccHHH
Q 012059 192 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEV 267 (472)
Q Consensus 192 ~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~ 267 (472)
+.+ +....++ ..+..++.+||.| +.|-+-.-.+..++..+ ....+++.|.|.|+.+
T Consensus 118 ---------dpl---~~iA~~~-------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 ---------DPL---PPIADEL-------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ---------Ccc---HHHHHHH-------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 111 1111122 2345689999999 33433233444555555 6788889999988765
No 464
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.32 E-value=1.6 Score=41.27 Aligned_cols=58 Identities=5% Similarity=0.194 Sum_probs=32.1
Q ss_pred EEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeecc
Q 012059 202 LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 261 (472)
Q Consensus 202 I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SA 261 (472)
|-|-....+.+.+..... ....+++|+|++|.|.... ...+.+++..-+...+|++|.
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCCCCeEEEEEC
Confidence 333334445555544433 3578999999999986432 344444555445443444443
No 465
>PRK09354 recA recombinase A; Provisional
Probab=91.22 E-value=0.44 Score=45.27 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=29.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
.|+-+.|.+|+|||||...+..+.... . .+..++++..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~---------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K---------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H---------cCCcEEEECCccchHH
Confidence 356688999999999985444443332 2 3567888886655543
No 466
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=2.3 Score=42.17 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHhhH-------h-cC----CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCC
Q 012059 79 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSA-------L-SG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 146 (472)
Q Consensus 79 ~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~-------~-~~----~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~ 146 (472)
+|.+++.++.....|.-.-.+.=.+.+..- . +. ..+++.+|.|||||..+.-.+..
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 677888888777776654444333433321 1 11 35999999999999643322221
Q ss_pred CCCceEEEEcCCHH
Q 012059 147 QKNPLAMVLTPTRE 160 (472)
Q Consensus 147 ~~~~~~lil~Pt~~ 160 (472)
..-|.+=++.|...
T Consensus 562 S~FPFvKiiSpe~m 575 (744)
T KOG0741|consen 562 SDFPFVKIISPEDM 575 (744)
T ss_pred cCCCeEEEeChHHc
Confidence 34677888888543
No 467
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.19 E-value=0.85 Score=48.99 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999974
No 468
>PRK05636 replicative DNA helicase; Provisional
Probab=91.19 E-value=1.4 Score=44.58 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCcchhhH
Q 012059 111 GKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~ 129 (472)
|.-+++.|.||.|||.-++
T Consensus 265 G~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLAL 283 (505)
T ss_pred CceEEEEeCCCCCHHHHHH
Confidence 4457889999999997433
No 469
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.11 E-value=1.3 Score=44.22 Aligned_cols=75 Identities=9% Similarity=0.290 Sum_probs=57.3
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh----cCCCEEEeChHHHHHHHHcCCCCCC
Q 012059 147 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ----QGVELIVGTPGRLIDLLMKHDIELD 222 (472)
Q Consensus 147 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~I~i~Tp~~l~~~~~~~~~~~~ 222 (472)
+.+.++||.|-|+.-|.++...++.. ++.+.+++|+.+..+....+. ..+.|+||| + +..+.+++.
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----d-VAaRGLDi~ 408 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----D-VAARGLDVP 408 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEc-----c-cccccCCCc
Confidence 46778999999999999877777664 368899999988777555443 248899999 3 345677889
Q ss_pred CeeEEEEec
Q 012059 223 DIRMFVLDE 231 (472)
Q Consensus 223 ~~~~iVvDE 231 (472)
++++||-=+
T Consensus 409 dV~lVInyd 417 (519)
T KOG0331|consen 409 DVDLVINYD 417 (519)
T ss_pred cccEEEeCC
Confidence 999888543
No 470
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.07 E-value=0.33 Score=50.57 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=35.8
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
+++++.||||||||..+++|-+... +..++|+=|.-++........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 5899999999999999999986431 23477888888887655554444
No 471
>PHA00012 I assembly protein
Probab=90.97 E-value=3.3 Score=38.70 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.0
Q ss_pred EEEEccCCCCcchhhHHHHHHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
-++.|..|+|||+.++.-+...+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 57899999999997766555544
No 472
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.73 E-value=0.67 Score=38.16 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
.+.+++++||.-.-+|......+...+..+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 455689999999887776677777777766
No 473
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.72 E-value=1.2 Score=47.71 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
.+.+++.||+|+|||+.
T Consensus 487 ~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999984
No 474
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.61 E-value=0.49 Score=51.35 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=72.5
Q ss_pred cCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE-EEEeccccccCCCCCCcEEE
Q 012059 316 KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV-IVATGILGRGVELLGVRQVI 394 (472)
Q Consensus 316 ~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v-LvaT~~~~~Gidi~~~~~VI 394 (472)
..+...++|+|+.-....+.++..+. ..++.....-+ .++-...+..|.+ +++ |+-+...+-|+|+-.+.+|+
T Consensus 1217 ~k~~qekvIvfsqws~~ldV~e~~~~-~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvf 1290 (1394)
T KOG0298|consen 1217 FKNEQEKVIVFSQWSVVLDVKELRYL-MNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVF 1290 (1394)
T ss_pred ccCcCceEEEEEehHHHHHHHHHHHH-hhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhh
Confidence 34445689999998888887777776 33444332222 2344556666655 554 56678889999999999999
Q ss_pred EecCCCCHhHHHHhhcccccCCCc
Q 012059 395 IFDMPNSIKEYVHQIGRASQMGDE 418 (472)
Q Consensus 395 ~~~~p~s~~~~~Qr~GR~~R~g~~ 418 (472)
..++-.++..-.|.+||+.|.|++
T Consensus 1291 l~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1291 LVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred eeccccCchHHHhhhhhhhhcccc
Confidence 999999999999999999999985
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=90.59 E-value=0.33 Score=44.43 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.3
Q ss_pred HhcCCcEEEEccCCCCcchhhH
Q 012059 108 ALSGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~ 129 (472)
+..+.++++.||+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4578899999999999997443
No 476
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.57 E-value=0.34 Score=44.54 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=21.2
Q ss_pred HHHhhHhcCCcEEEEccCCCCcchhhH
Q 012059 103 QAIPSALSGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 103 ~~i~~~~~~~~~iv~a~TGsGKT~~~~ 129 (472)
+++..+..++++++.||+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 344455588999999999999998643
No 477
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=90.51 E-value=0.6 Score=46.71 Aligned_cols=38 Identities=13% Similarity=0.346 Sum_probs=25.7
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHhC--CCCceEeeccc
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSAT 262 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT 262 (472)
-.++++.|+||+|.+... ....+++.+ |...++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~----afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQ----AFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHH----HHHHHhcccccCccCeEEEEec
Confidence 567899999999988633 334566666 55556555555
No 478
>PHA00149 DNA encapsidation protein
Probab=90.50 E-value=2.9 Score=38.07 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=70.6
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV 193 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (472)
-++.|.-|-|||.+..--++..+.. +|.+.|+|=-...-.......+.......+-.-..+.|....
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~---------kgeqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~F~Vkg~ki~---- 86 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIK---------KGEQFIYLRRYKSELKKKSKFFADIAQEFPNTEFEVKGRKIY---- 86 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHh---------cCcEEEEEEecchhhhhhhhhhHHHHHhCCCCceEEEccEEE----
Confidence 4556999999999876666766654 566788876554322223333333333223222333331111
Q ss_pred HHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch-hhhcC--------cHHHHHHHHHhCCCCceEeeccc
Q 012059 194 YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-MLQRG--------FRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 194 ~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~-~~~~~--------~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
.++-.|....|=.-+..+ .....+++..|++||.-. -..++ +...+..+.+.-...+++++|..
T Consensus 87 ---~~~k~igy~i~LS~~q~~--Ks~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa 159 (331)
T PHA00149 87 ---IKGKLIGYAIPLSTWQAL--KSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNA 159 (331)
T ss_pred ---EcCeEEEEEEehhhHHhh--cccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCc
Confidence 112234444432222222 334567899999999986 22222 33444445555567788888754
No 479
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.47 E-value=1.4 Score=42.74 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=13.9
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.||+|+|||..+
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999753
No 480
>CHL00176 ftsH cell division protein; Validated
Probab=90.47 E-value=0.72 Score=47.96 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
+.+++.+|+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5699999999999984
No 481
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.43 E-value=1.9 Score=46.10 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457899999999999974
No 482
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.42 E-value=1.5 Score=44.67 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=54.4
Q ss_pred EEEEECCchhHHHHHHHHhh---hc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccccc-CCCCCCcE
Q 012059 323 AVVYVGSRLGADLLSNAISV---TT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGRG-VELLGVRQ 392 (472)
Q Consensus 323 ~lIf~~~~~~~~~l~~~L~~---~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~~~~ 392 (472)
+||++++++.|..+++.+.. .. +..+..++|+++...+... ++.| .+|+|+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999887763 23 5678899999997766544 4446 99999998 35555 88888998
Q ss_pred EEE
Q 012059 393 VII 395 (472)
Q Consensus 393 VI~ 395 (472)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 886
No 483
>PRK09087 hypothetical protein; Validated
Probab=90.40 E-value=1.2 Score=39.88 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
..+++.||+|+|||..
T Consensus 45 ~~l~l~G~~GsGKThL 60 (226)
T PRK09087 45 PVVVLAGPVGSGKTHL 60 (226)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4499999999999973
No 484
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.19 E-value=0.2 Score=47.51 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
+-+++.+|+|+|||+.+
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 45889999999999853
No 485
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.18 E-value=3.2 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCcchhhH
Q 012059 110 SGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~ 129 (472)
...+.++.||+|.|||...-
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCCceEEEcCCCCCHHHHHH
Confidence 34689999999999998543
No 486
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=90.11 E-value=0.58 Score=42.91 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=25.1
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.+|-||||+||+-. +..++..+.- ......|++|+|.+..
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI---~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLI---QPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcc---cCCCCceEEECCCCCC
Confidence 67899999999962 2222221111 1345569999998754
No 487
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.09 E-value=0.35 Score=47.22 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=29.8
Q ss_pred hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 109 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
...+++++.|.||||||. ++..++..+.. .+.+++|.=|.-+...
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~---------~g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRA---------RGDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHH---------TT-EEEEEEETTHHHH
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHH---------cCCEEEEEECCchHHH
Confidence 356889999999999997 45666666654 2456777777766544
No 488
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=90.03 E-value=3.1 Score=38.43 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=67.9
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHH-HHHHHhcCCCCeEEEEEcCcchHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE-QAKLLGKGLPFKTALVVGGDAMARQ 192 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~-~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (472)
-++.|.-|-|||.+..--++..++. .|.+.|+|=-...-+..+.. .+..+.+..+-....+.|.....
T Consensus 20 ~~viG~RgiGKtya~k~~~i~df~~---------~G~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk~~k~~i-- 88 (333)
T PF05894_consen 20 NFVIGARGIGKTYALKKKLIKDFIE---------YGEQFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVKGNKIYI-- 88 (333)
T ss_pred EEEEecccccchhHHHHHHHHHHHh---------cCCEEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEEccEEEE--
Confidence 4556999999999877777777765 56778888655433322222 33344333332222233311110
Q ss_pred HHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-C--------cHHHHHHHHHhCCCCceEeecc
Q 012059 193 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-G--------FRDQVMQIFRAISLPQILMYSA 261 (472)
Q Consensus 193 ~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~-~--------~~~~~~~i~~~~~~~~~i~~SA 261 (472)
.+-.+...+| |...-........++..||+||+-.=-+. + +...+..+.+.-...+++++|.
T Consensus 89 -----dgk~~g~~~~--Ls~~q~~Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~N 159 (333)
T PF05894_consen 89 -----DGKLIGYFIP--LSGWQKLKSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSN 159 (333)
T ss_pred -----CCeEEEEEEe--cchhhhcccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEec
Confidence 1222333332 22222234456788999999998741111 1 2223333333336778888875
No 489
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=90.02 E-value=2 Score=42.39 Aligned_cols=71 Identities=11% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHH---Hhc-CCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
..+.++|.+.++.-|+-+++.+.+. ++++..++||.+..+.... ++. ..+|+|||. ....+++.++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCc
Confidence 4677999999999888777766665 4899999999887765443 333 589999993 3345678889
Q ss_pred eeEEE
Q 012059 224 IRMFV 228 (472)
Q Consensus 224 ~~~iV 228 (472)
+++||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 98876
No 490
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.98 E-value=0.41 Score=42.85 Aligned_cols=53 Identities=25% Similarity=0.220 Sum_probs=31.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
.|..+++.+++|+|||...+-.+.+.+.+ .+.++++++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~---------~ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN---------FGEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH---------HT--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh---------cCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 45679999999999998544444444322 1455888773 33335555555554
No 491
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=1.5 Score=42.73 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=30.5
Q ss_pred CeeEEEEeccchhhhcC--------cHHHHHHHHHhC-----CCCceEeecccc-cHHHHHHHhh
Q 012059 223 DIRMFVLDEVDCMLQRG--------FRDQVMQIFRAI-----SLPQILMYSATI-SQEVEKMSSS 273 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~--------~~~~~~~i~~~~-----~~~~~i~~SAT~-~~~~~~~~~~ 273 (472)
...++++||+|.++... .+...+-++... ++.+++.++||- |.++.+.+..
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 46688899999987532 122222222222 567899999994 5555554444
No 492
>PRK04328 hypothetical protein; Provisional
Probab=89.91 E-value=0.56 Score=42.73 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=33.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.|..++|.+++|+|||...+-.+.+.+. .+..++++. +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~----------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567999999999999754433443332 255577776 4444445556666554
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.89 E-value=2.2 Score=40.33 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=26.7
Q ss_pred CCeeEEEEeccchhhhc-CcHHHHHHHHHhC-------CCCceEeecccccHHH
Q 012059 222 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI-------SLPQILMYSATISQEV 267 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~-~~~~~~~~i~~~~-------~~~~~i~~SAT~~~~~ 267 (472)
.++++||+|=+-++... +...++..+.+.. +...++.++||.....
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 45789999998876422 2234444444321 3345678888865433
No 494
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=89.87 E-value=0.7 Score=48.05 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=36.8
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH--HHHHHHHHHHHHhc
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE--LCIQVEEQAKLLGK 174 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~~ 174 (472)
..++++|.|+||+|||..+.. ++..... .+..++++=|-.. |...+...++..+.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~-l~~q~i~---------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAEL-LITQDIR---------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHH-HHHHHHH---------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 347899999999999986543 4333332 2455777777754 66666666666643
No 495
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=89.87 E-value=0.83 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=20.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.|+.+.+.|++|||||+ ++-++..+.
T Consensus 499 ~G~~vaIvG~SGsGKST--LlklL~gl~ 524 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKST--LAKLLVGFF 524 (708)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhccC
Confidence 78899999999999997 445554443
No 496
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.85 E-value=3.3 Score=38.14 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=21.0
Q ss_pred HHHhhHhc-C--CcEEEEccCCCCcchhhHHHHHHH
Q 012059 103 QAIPSALS-G--KSLLVSANTGSGKTASFLVPVISQ 135 (472)
Q Consensus 103 ~~i~~~~~-~--~~~iv~a~TGsGKT~~~~l~~~~~ 135 (472)
..++.+.. + +++++.+|+|+|||+ ++-++..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKtt--l~~~l~~ 133 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTT--LLRDLAR 133 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHH--HHHHHhC
Confidence 34555553 3 589999999999998 3444433
No 497
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.81 E-value=10 Score=32.29 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=36.3
Q ss_pred CCCeeEEEEeccchhhhcCc--HHHHHHHHHhCCCCceEeecc-cccHHHHHHHh
Q 012059 221 LDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSA-TISQEVEKMSS 272 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~--~~~~~~i~~~~~~~~~i~~SA-T~~~~~~~~~~ 272 (472)
-..+++||+||+-...+.++ ...+..++...+...-+.+|+ ..|+++.+.+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 35689999999999888774 466777777766554455554 56776766543
No 498
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=89.78 E-value=0.48 Score=42.55 Aligned_cols=44 Identities=18% Similarity=0.396 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
++++.|.|.||||||.+ +-.++..+.. ..+..++|+=|.-+-+.
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~~--------~~~~~~ii~D~~GEY~~ 66 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELLK--------KKGAKVIIFDPHGEYAS 66 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHh--------cCCCCEEEEcCCCcchh
Confidence 47899999999999985 4555555552 24556888888765433
No 499
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.74 E-value=0.3 Score=48.16 Aligned_cols=46 Identities=15% Similarity=0.318 Sum_probs=31.8
Q ss_pred HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 108 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
-...+++++.|+||||||.. +..++..+.. .+.+++|+=|..++..
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~---------~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQ-IRELLASIRA---------RGDRAIIYDPNGGFVS 84 (410)
T ss_pred chhhccEEEEcCCCCCHHHH-HHHHHHHHHh---------cCCCEEEEeCCcchhH
Confidence 33457899999999999984 4444444433 2456888888877654
No 500
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.69 E-value=0.84 Score=41.82 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=24.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
.|.-++|.+++|+|||...+-.+...+ ..+.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a----------~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA----------SRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----------hCCCcEEEEE
Confidence 456699999999999985443333322 1355688877
Done!