Query 012059
Match_columns 472
No_of_seqs 288 out of 2944
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 20:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4E-68 1.4E-72 525.7 49.4 391 58-454 40-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.1E-62 3.7E-67 486.6 46.7 395 61-457 2-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.7E-59 5.7E-64 462.7 38.4 373 69-451 32-406 (410)
4 3eiq_A Eukaryotic initiation f 100.0 2.8E-58 9.7E-63 454.6 36.5 377 67-453 33-412 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.2E-57 4.2E-62 447.9 40.2 373 71-454 18-391 (400)
6 1xti_A Probable ATP-dependent 100.0 2.7E-56 9.2E-61 437.1 39.7 369 74-452 8-382 (391)
7 1hv8_A Putative ATP-dependent 100.0 1.4E-55 4.7E-60 428.3 43.8 359 72-447 4-364 (367)
8 1fuu_A Yeast initiation factor 100.0 2.6E-57 8.7E-62 444.8 23.3 374 69-453 16-391 (394)
9 3pey_A ATP-dependent RNA helic 100.0 1.9E-54 6.5E-59 424.5 40.3 356 72-441 3-370 (395)
10 3fht_A ATP-dependent RNA helic 100.0 8.7E-55 3E-59 429.4 37.9 367 70-449 21-401 (412)
11 3sqw_A ATP-dependent RNA helic 100.0 7.7E-55 2.6E-59 446.5 37.6 366 72-441 15-411 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 2.2E-54 7.4E-59 443.0 36.9 358 81-441 79-462 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 9E-56 3.1E-60 444.2 20.8 374 63-449 78-468 (479)
14 2z0m_A 337AA long hypothetical 100.0 1.4E-52 4.8E-57 402.2 39.4 334 81-441 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 2.1E-51 7.2E-56 417.3 35.4 342 73-437 18-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 3.8E-53 1.3E-57 426.3 22.0 388 49-450 93-493 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 5.3E-51 1.8E-55 410.5 33.5 340 74-438 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.4E-49 4.7E-54 392.0 28.3 325 84-441 9-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-47 4.7E-52 402.5 31.8 336 72-430 6-410 (715)
20 2zj8_A DNA helicase, putative 100.0 3.6E-48 1.2E-52 406.7 23.8 332 75-429 2-388 (720)
21 4a2p_A RIG-I, retinoic acid in 100.0 3.8E-47 1.3E-51 389.4 29.5 330 94-431 5-511 (556)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-47 5.4E-52 400.7 22.0 332 75-430 2-390 (702)
23 2ykg_A Probable ATP-dependent 100.0 9.7E-48 3.3E-52 403.7 19.6 343 86-436 3-524 (696)
24 1tf5_A Preprotein translocase 100.0 3.1E-46 1.1E-50 379.2 29.4 358 43-430 34-547 (844)
25 3tbk_A RIG-I helicase domain; 100.0 1.2E-46 4.2E-51 385.6 26.4 334 96-436 4-515 (555)
26 4a2q_A RIG-I, retinoic acid in 100.0 5.3E-46 1.8E-50 393.9 29.3 333 91-430 243-751 (797)
27 3l9o_A ATP-dependent RNA helic 100.0 5.6E-46 1.9E-50 400.2 28.6 329 75-429 163-598 (1108)
28 4ddu_A Reverse gyrase; topoiso 100.0 4.2E-45 1.4E-49 393.4 29.1 321 91-442 74-504 (1104)
29 1wp9_A ATP-dependent RNA helic 100.0 4.8E-44 1.6E-48 360.4 34.4 322 96-430 9-477 (494)
30 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-44 3.8E-49 387.5 29.4 334 90-430 242-751 (936)
31 2xgj_A ATP-dependent RNA helic 100.0 1.4E-43 4.6E-48 378.6 37.4 318 90-435 81-507 (1010)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 2.3E-45 7.8E-50 395.8 21.9 323 87-442 48-468 (1054)
33 4f92_B U5 small nuclear ribonu 100.0 5.3E-44 1.8E-48 397.5 31.2 343 81-437 911-1317(1724)
34 4gl2_A Interferon-induced heli 100.0 2.1E-45 7.1E-50 386.1 15.1 325 96-429 7-520 (699)
35 1gm5_A RECG; helicase, replica 100.0 5E-44 1.7E-48 370.4 22.7 339 83-447 356-715 (780)
36 4f92_B U5 small nuclear ribonu 100.0 2.8E-43 9.6E-48 391.7 29.6 338 93-437 76-482 (1724)
37 2fsf_A Preprotein translocase 100.0 2E-43 6.9E-48 357.5 24.7 322 92-431 71-586 (853)
38 1nkt_A Preprotein translocase 100.0 3E-42 1E-46 349.2 30.6 336 91-444 107-637 (922)
39 4a4z_A Antiviral helicase SKI2 100.0 2.7E-42 9.4E-47 368.6 31.5 307 92-426 36-490 (997)
40 2eyq_A TRCF, transcription-rep 100.0 1.7E-40 5.9E-45 359.8 37.9 324 79-429 586-923 (1151)
41 3fe2_A Probable ATP-dependent 100.0 1.3E-40 4.5E-45 302.9 26.6 238 47-286 2-240 (242)
42 2whx_A Serine protease/ntpase/ 100.0 1.8E-42 6.3E-47 352.7 14.6 325 79-452 155-505 (618)
43 2oca_A DAR protein, ATP-depend 100.0 4.7E-42 1.6E-46 347.3 16.6 311 95-426 112-453 (510)
44 2jlq_A Serine protease subunit 100.0 1.4E-41 4.6E-46 336.6 19.5 310 93-451 1-337 (451)
45 2fwr_A DNA repair protein RAD2 100.0 2.8E-40 9.6E-45 331.1 22.0 292 96-428 93-454 (472)
46 1yks_A Genome polyprotein [con 100.0 7.8E-42 2.7E-46 336.7 7.3 288 107-451 4-325 (440)
47 2xau_A PRE-mRNA-splicing facto 100.0 8.1E-40 2.8E-44 341.3 21.7 338 71-430 69-445 (773)
48 2wv9_A Flavivirin protease NS2 100.0 3.4E-40 1.2E-44 337.9 15.0 315 89-451 203-559 (673)
49 2z83_A Helicase/nucleoside tri 100.0 3.6E-39 1.2E-43 319.7 15.2 273 105-428 15-313 (459)
50 3o8b_A HCV NS3 protease/helica 100.0 4.7E-39 1.6E-43 324.3 14.5 278 96-432 217-518 (666)
51 1wrb_A DJVLGB; RNA helicase, D 100.0 1.1E-37 3.7E-42 285.9 21.6 237 59-295 6-251 (253)
52 3h1t_A Type I site-specific re 100.0 2.3E-38 7.8E-43 325.5 16.0 306 96-417 178-545 (590)
53 2v6i_A RNA helicase; membrane, 100.0 3.1E-37 1.1E-41 303.3 23.2 268 110-425 1-288 (431)
54 3iuy_A Probable ATP-dependent 100.0 8.2E-37 2.8E-41 275.5 23.0 215 66-282 11-227 (228)
55 3dkp_A Probable ATP-dependent 100.0 6.5E-37 2.2E-41 279.4 21.3 229 52-286 3-243 (245)
56 1z63_A Helicase of the SNF2/RA 100.0 1.8E-36 6.2E-41 305.7 25.5 309 96-428 37-453 (500)
57 3ber_A Probable ATP-dependent 100.0 5.8E-36 2E-40 272.8 25.1 207 71-284 40-248 (249)
58 3dmq_A RNA polymerase-associat 100.0 6E-37 2.1E-41 328.1 21.1 332 96-442 153-627 (968)
59 3bor_A Human initiation factor 100.0 3.2E-36 1.1E-40 272.9 21.7 214 64-284 20-235 (237)
60 2oxc_A Probable ATP-dependent 100.0 7.9E-36 2.7E-40 269.2 23.5 211 65-283 15-228 (230)
61 1vec_A ATP-dependent RNA helic 100.0 2.5E-35 8.4E-40 261.6 24.8 201 74-281 3-205 (206)
62 2pl3_A Probable ATP-dependent 100.0 4.1E-35 1.4E-39 265.8 25.6 227 49-284 5-233 (236)
63 1q0u_A Bstdead; DEAD protein, 100.0 6.4E-36 2.2E-40 267.9 19.1 207 73-286 3-214 (219)
64 1qde_A EIF4A, translation init 100.0 3.1E-35 1.1E-39 264.5 22.8 210 68-285 8-218 (224)
65 3rc3_A ATP-dependent RNA helic 100.0 2.2E-35 7.5E-40 301.3 24.0 274 106-427 150-444 (677)
66 2gxq_A Heat resistant RNA depe 100.0 1.2E-34 4.2E-39 257.4 24.8 203 75-283 2-205 (207)
67 3fmo_B ATP-dependent RNA helic 100.0 3.2E-35 1.1E-39 274.9 21.7 213 62-284 77-298 (300)
68 3mwy_W Chromo domain-containin 100.0 3.5E-34 1.2E-38 302.6 31.1 382 24-428 166-684 (800)
69 3jux_A Protein translocase sub 100.0 1E-33 3.5E-38 280.9 31.6 333 91-444 71-607 (822)
70 1t6n_A Probable ATP-dependent 100.0 1.5E-34 5E-39 259.3 23.0 211 65-282 5-219 (220)
71 3ly5_A ATP-dependent RNA helic 100.0 2.2E-34 7.6E-39 264.4 23.0 202 74-278 52-257 (262)
72 1z3i_X Similar to RAD54-like; 100.0 1.8E-32 6.1E-37 282.5 32.3 321 96-428 55-528 (644)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.2E-32 4E-37 292.6 22.5 312 96-426 271-707 (1038)
74 2ipc_A Preprotein translocase 100.0 5.4E-29 1.9E-33 251.6 30.9 319 91-430 75-700 (997)
75 2p6n_A ATP-dependent RNA helic 100.0 6.5E-30 2.2E-34 222.2 19.8 181 272-456 9-190 (191)
76 2jgn_A DBX, DDX3, ATP-dependen 100.0 4.9E-29 1.7E-33 215.8 19.4 168 287-456 14-181 (185)
77 1c4o_A DNA nucleotide excision 100.0 8.1E-28 2.8E-32 247.5 29.2 176 253-438 380-560 (664)
78 2d7d_A Uvrabc system protein B 100.0 1.8E-26 6.1E-31 237.4 31.0 175 253-437 386-565 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 4.4E-27 1.5E-31 199.6 19.3 151 289-442 6-156 (163)
80 1fuk_A Eukaryotic initiation f 100.0 1.3E-27 4.3E-32 203.5 15.8 158 292-452 3-161 (165)
81 1t5i_A C_terminal domain of A 100.0 1.6E-27 5.6E-32 203.9 15.7 161 290-453 3-164 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 9.3E-27 3.2E-31 200.2 17.4 157 289-448 4-167 (175)
83 3eaq_A Heat resistant RNA depe 99.9 8.4E-26 2.9E-30 200.0 17.6 150 293-445 6-155 (212)
84 3i32_A Heat resistant RNA depe 99.9 3.3E-25 1.1E-29 205.2 17.1 149 293-444 3-151 (300)
85 3b6e_A Interferon-induced heli 99.9 4.2E-25 1.4E-29 197.1 10.6 165 93-262 30-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.9 2.2E-26 7.7E-31 196.7 0.0 149 293-444 4-153 (170)
87 2vl7_A XPD; helicase, unknown 99.9 4.3E-24 1.5E-28 215.6 14.9 127 92-236 4-188 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 3.8E-21 1.3E-25 194.9 29.4 308 96-428 3-531 (551)
89 3llm_A ATP-dependent RNA helic 99.9 1.1E-22 3.9E-27 183.4 14.1 171 94-279 59-232 (235)
90 1rif_A DAR protein, DNA helica 99.9 6.1E-23 2.1E-27 190.7 10.3 153 96-267 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 4.2E-20 1.4E-24 166.3 14.2 138 95-265 92-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 6.4E-19 2.2E-23 179.8 23.5 82 96-186 3-88 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 1E-19 3.5E-24 166.4 11.6 128 301-428 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 3.7E-09 1.3E-13 107.7 7.8 142 98-260 151-296 (608)
95 3upu_A ATP-dependent DNA helic 98.3 2.3E-06 7.7E-11 84.4 10.8 72 89-169 18-94 (459)
96 4b3f_X DNA-binding protein smu 98.3 1.5E-06 5E-11 89.6 9.1 67 96-172 189-256 (646)
97 2gk6_A Regulator of nonsense t 98.3 3.5E-06 1.2E-10 86.3 11.7 70 94-172 178-247 (624)
98 3e1s_A Exodeoxyribonuclease V, 98.3 4.2E-06 1.4E-10 84.4 11.4 63 96-168 189-251 (574)
99 3hgt_A HDA1 complex subunit 3; 98.3 3.8E-06 1.3E-10 76.9 9.8 123 300-428 105-237 (328)
100 2xzl_A ATP-dependent helicase 98.2 6.1E-06 2.1E-10 86.4 11.3 70 94-172 358-427 (802)
101 2wjy_A Regulator of nonsense t 98.2 1E-05 3.5E-10 84.6 12.1 70 94-172 354-423 (800)
102 3lfu_A DNA helicase II; SF1 he 98.1 0.00016 5.4E-09 74.7 19.8 71 95-173 8-78 (647)
103 2o0j_A Terminase, DNA packagin 97.7 0.00026 8.8E-09 67.2 11.8 72 96-175 163-234 (385)
104 3cpe_A Terminase, DNA packagin 97.3 0.0011 3.9E-08 67.2 11.2 74 96-177 163-236 (592)
105 3vkw_A Replicase large subunit 97.3 0.00071 2.4E-08 65.0 8.5 105 113-260 163-267 (446)
106 3ec2_A DNA replication protein 97.2 0.0015 5.2E-08 55.1 8.8 30 98-127 16-54 (180)
107 2orw_A Thymidine kinase; TMTK, 97.0 0.0014 4.6E-08 55.6 6.5 39 111-159 3-41 (184)
108 2kjq_A DNAA-related protein; s 96.9 0.001 3.5E-08 54.2 5.1 18 110-127 35-52 (149)
109 2j9r_A Thymidine kinase; TK1, 96.7 0.0024 8.1E-08 54.9 6.0 40 111-160 28-67 (214)
110 1xx6_A Thymidine kinase; NESG, 96.6 0.003 1E-07 53.7 6.2 39 111-159 8-46 (191)
111 2b8t_A Thymidine kinase; deoxy 96.6 0.002 6.7E-08 56.2 5.1 92 110-236 11-102 (223)
112 2orv_A Thymidine kinase; TP4A 96.5 0.0056 1.9E-07 53.1 6.8 40 110-159 18-57 (234)
113 3te6_A Regulatory protein SIR3 96.4 0.026 8.8E-07 52.0 11.6 26 110-136 44-69 (318)
114 1pjr_A PCRA; DNA repair, DNA r 96.4 0.0069 2.3E-07 63.1 8.6 71 95-173 10-80 (724)
115 1uaa_A REP helicase, protein ( 96.4 0.0043 1.5E-07 64.1 6.9 71 96-174 2-72 (673)
116 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0034 1.2E-07 53.8 4.1 40 111-160 28-67 (219)
117 1l8q_A Chromosomal replication 96.2 0.03 1E-06 51.9 10.9 17 111-127 37-53 (324)
118 1a5t_A Delta prime, HOLB; zinc 96.1 0.015 5.2E-07 54.3 8.4 39 97-136 3-48 (334)
119 2zpa_A Uncharacterized protein 95.9 0.013 4.4E-07 59.3 7.3 112 96-263 175-288 (671)
120 2chg_A Replication factor C sm 95.9 0.082 2.8E-06 45.5 11.8 16 112-127 39-54 (226)
121 3kl4_A SRP54, signal recogniti 95.8 0.027 9.3E-07 54.2 8.8 130 112-274 98-234 (433)
122 1w4r_A Thymidine kinase; type 95.8 0.014 4.7E-07 49.3 5.7 39 110-158 19-57 (195)
123 2v1u_A Cell division control p 95.8 0.032 1.1E-06 53.0 9.2 29 223-251 130-159 (387)
124 3u4q_A ATP-dependent helicase/ 95.8 0.014 4.8E-07 64.5 7.4 107 96-215 10-117 (1232)
125 2w58_A DNAI, primosome compone 95.8 0.066 2.3E-06 45.7 10.3 16 112-127 55-70 (202)
126 2z4s_A Chromosomal replication 95.5 0.049 1.7E-06 52.9 9.5 17 111-127 130-146 (440)
127 1d2n_A N-ethylmaleimide-sensit 95.5 0.098 3.3E-06 47.1 10.9 17 112-128 65-81 (272)
128 4b4t_M 26S protease regulatory 95.4 0.057 1.9E-06 51.9 9.4 55 70-127 174-231 (434)
129 3u61_B DNA polymerase accessor 95.3 0.093 3.2E-06 48.6 10.5 39 222-260 104-143 (324)
130 2qby_B CDC6 homolog 3, cell di 95.3 0.04 1.4E-06 52.4 8.0 18 111-128 45-62 (384)
131 3h4m_A Proteasome-activating n 95.3 0.07 2.4E-06 48.3 9.2 54 72-127 12-67 (285)
132 3eie_A Vacuolar protein sortin 95.3 0.17 5.9E-06 46.8 12.0 51 72-128 13-68 (322)
133 4b4t_J 26S protease regulatory 95.2 0.06 2E-06 51.0 8.6 54 71-127 142-198 (405)
134 1gm5_A RECG; helicase, replica 95.2 0.057 2E-06 56.2 9.1 79 320-398 417-499 (780)
135 1fnn_A CDC6P, cell division co 95.1 0.12 4.2E-06 49.0 10.7 15 113-127 46-60 (389)
136 3bos_A Putative DNA replicatio 94.9 0.018 6E-07 50.7 3.8 18 110-127 51-68 (242)
137 3pfi_A Holliday junction ATP-d 94.9 0.22 7.6E-06 46.3 11.6 17 112-128 56-72 (338)
138 2p65_A Hypothetical protein PF 94.8 0.074 2.5E-06 44.4 7.5 18 111-128 43-60 (187)
139 1g5t_A COB(I)alamin adenosyltr 94.7 0.19 6.6E-06 42.3 9.4 136 111-272 28-172 (196)
140 2dr3_A UPF0273 protein PH0284; 94.5 0.3 1E-05 42.8 11.0 50 110-170 22-71 (247)
141 2q6t_A DNAB replication FORK h 94.4 0.13 4.4E-06 50.0 9.1 39 110-157 199-237 (444)
142 3dm5_A SRP54, signal recogniti 94.4 0.31 1.1E-05 46.9 11.5 57 112-181 101-159 (443)
143 3pvs_A Replication-associated 94.4 0.049 1.7E-06 52.9 6.0 17 112-128 51-67 (447)
144 3syl_A Protein CBBX; photosynt 94.3 0.043 1.5E-06 50.4 5.1 18 111-128 67-84 (309)
145 2gno_A DNA polymerase III, gam 94.2 0.15 5.2E-06 46.7 8.5 17 113-129 20-36 (305)
146 1sxj_E Activator 1 40 kDa subu 94.1 0.14 4.7E-06 48.0 8.4 39 222-261 133-172 (354)
147 2qby_A CDC6 homolog 1, cell di 94.1 0.098 3.4E-06 49.5 7.3 17 111-127 45-61 (386)
148 1njg_A DNA polymerase III subu 94.0 1.2 4E-05 38.5 14.0 15 113-127 47-61 (250)
149 1iqp_A RFCS; clamp loader, ext 93.9 0.21 7E-06 46.1 9.0 16 113-128 48-63 (327)
150 1cr0_A DNA primase/helicase; R 93.5 0.51 1.7E-05 42.9 10.7 19 109-127 33-51 (296)
151 1sxj_D Activator 1 41 kDa subu 93.5 0.14 4.9E-06 47.8 7.2 38 222-260 132-170 (353)
152 4b4t_H 26S protease regulatory 93.4 0.083 2.8E-06 50.9 5.3 54 71-127 203-259 (467)
153 2r6a_A DNAB helicase, replicat 93.4 0.36 1.2E-05 47.0 10.1 39 110-157 202-240 (454)
154 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.34 1.1E-05 42.0 8.9 18 110-127 22-39 (235)
155 1jr3_A DNA polymerase III subu 93.1 0.81 2.8E-05 42.9 11.9 41 221-262 117-157 (373)
156 3oiy_A Reverse gyrase helicase 93.1 0.32 1.1E-05 46.6 9.1 81 318-398 62-148 (414)
157 2qp9_X Vacuolar protein sortin 93.0 0.2 6.9E-06 47.0 7.3 18 111-128 84-101 (355)
158 1sxj_A Activator 1 95 kDa subu 92.9 0.092 3.2E-06 52.2 5.1 41 222-263 147-189 (516)
159 4a1f_A DNAB helicase, replicat 92.8 0.094 3.2E-06 48.7 4.7 38 110-157 45-82 (338)
160 1sxj_B Activator 1 37 kDa subu 92.7 0.32 1.1E-05 44.7 8.1 15 113-127 44-58 (323)
161 3vfd_A Spastin; ATPase, microt 92.6 0.36 1.2E-05 45.9 8.6 18 111-128 148-165 (389)
162 1sxj_C Activator 1 40 kDa subu 92.3 0.43 1.5E-05 44.4 8.6 40 222-262 109-148 (340)
163 2p6n_A ATP-dependent RNA helic 92.1 1.8 6.1E-05 36.3 11.5 73 149-231 54-130 (191)
164 1w5s_A Origin recognition comp 91.5 0.31 1.1E-05 46.6 6.8 16 112-127 51-68 (412)
165 1t6n_A Probable ATP-dependent 91.4 1.8 6.2E-05 37.0 11.1 75 321-398 83-167 (220)
166 1nlf_A Regulatory protein REPA 91.2 0.9 3.1E-05 40.8 9.2 23 107-129 26-48 (279)
167 2eyq_A TRCF, transcription-rep 91.2 0.87 3E-05 49.8 10.5 77 319-395 651-731 (1151)
168 2fna_A Conserved hypothetical 91.1 5.5 0.00019 36.6 15.0 52 206-260 123-177 (357)
169 3bh0_A DNAB-like replicative h 91.0 0.59 2E-05 42.9 7.8 38 110-157 67-104 (315)
170 3m6a_A ATP-dependent protease 90.8 0.24 8.2E-06 49.4 5.3 18 110-127 107-124 (543)
171 2hjv_A ATP-dependent RNA helic 90.7 1.6 5.3E-05 35.5 9.5 74 149-232 35-112 (163)
172 1n0w_A DNA repair protein RAD5 90.7 1.8 6.2E-05 37.6 10.5 20 110-129 23-42 (243)
173 3co5_A Putative two-component 90.6 0.17 5.8E-06 40.4 3.3 20 108-127 24-43 (143)
174 1hqc_A RUVB; extended AAA-ATPa 90.4 0.28 9.6E-06 45.2 5.1 17 111-127 38-54 (324)
175 3n70_A Transport activator; si 90.3 0.18 6.2E-06 40.3 3.2 20 109-128 22-41 (145)
176 4ddu_A Reverse gyrase; topoiso 90.1 0.81 2.8E-05 49.8 9.0 81 318-398 119-205 (1104)
177 1p9r_A General secretion pathw 90.0 0.38 1.3E-05 46.1 5.7 27 101-127 155-183 (418)
178 2eyu_A Twitching motility prot 89.8 0.25 8.6E-06 44.0 4.0 20 108-127 22-41 (261)
179 2qen_A Walker-type ATPase; unk 89.7 3.2 0.00011 38.2 11.9 18 110-127 30-47 (350)
180 2z43_A DNA repair and recombin 89.5 0.95 3.3E-05 41.7 7.9 59 110-172 106-165 (324)
181 2l8b_A Protein TRAI, DNA helic 89.0 0.78 2.7E-05 37.9 6.0 117 98-260 36-156 (189)
182 3e70_C DPA, signal recognition 88.7 1.1 3.9E-05 41.2 7.7 51 224-274 212-264 (328)
183 3eaq_A Heat resistant RNA depe 88.5 2.4 8.2E-05 36.2 9.3 71 149-229 31-105 (212)
184 2rb4_A ATP-dependent RNA helic 88.5 2.1 7.2E-05 35.2 8.7 75 148-232 33-111 (175)
185 3io5_A Recombination and repai 88.3 0.66 2.2E-05 42.3 5.6 42 113-162 30-71 (333)
186 2oap_1 GSPE-2, type II secreti 88.2 0.55 1.9E-05 46.3 5.5 39 87-127 237-276 (511)
187 1fuk_A Eukaryotic initiation f 88.1 2.5 8.6E-05 34.3 8.9 75 148-232 29-107 (165)
188 1ls1_A Signal recognition part 88.1 2.3 8E-05 38.5 9.3 19 110-128 97-115 (295)
189 1e9r_A Conjugal transfer prote 87.7 0.48 1.6E-05 45.8 4.8 44 110-163 52-95 (437)
190 3bgw_A DNAB-like replicative h 87.6 0.86 3E-05 44.1 6.4 38 110-157 196-233 (444)
191 3lda_A DNA repair protein RAD5 87.4 2.3 7.9E-05 40.4 9.2 19 110-128 177-195 (400)
192 1t5i_A C_terminal domain of A 87.4 3.7 0.00013 33.6 9.5 76 148-233 30-109 (172)
193 3jvv_A Twitching mobility prot 87.2 0.63 2.2E-05 43.5 5.0 18 110-127 122-139 (356)
194 3cmu_A Protein RECA, recombina 87.2 0.32 1.1E-05 55.5 3.5 42 110-161 1426-1467(2050)
195 3b85_A Phosphate starvation-in 87.1 0.83 2.8E-05 39.1 5.4 37 98-136 9-45 (208)
196 3fe2_A Probable ATP-dependent 86.1 3.8 0.00013 35.6 9.4 75 319-397 101-184 (242)
197 2gza_A Type IV secretion syste 86.0 0.5 1.7E-05 44.4 3.7 25 108-134 172-196 (361)
198 2jgn_A DBX, DDX3, ATP-dependen 86.0 2.4 8.1E-05 35.3 7.6 74 148-231 45-122 (185)
199 2qgz_A Helicase loader, putati 85.9 0.98 3.4E-05 41.3 5.6 18 111-128 152-169 (308)
200 1vec_A ATP-dependent RNA helic 85.6 4.2 0.00014 34.1 9.3 75 319-397 70-154 (206)
201 2gxq_A Heat resistant RNA depe 85.1 5.2 0.00018 33.6 9.6 75 319-397 71-152 (207)
202 1q57_A DNA primase/helicase; d 85.0 1.4 4.7E-05 43.5 6.5 39 110-157 241-279 (503)
203 1pzn_A RAD51, DNA repair and r 84.9 6.2 0.00021 36.6 10.6 19 110-128 130-148 (349)
204 3ber_A Probable ATP-dependent 84.2 4.9 0.00017 35.2 9.2 74 320-397 111-194 (249)
205 1qvr_A CLPB protein; coiled co 84.1 2 7E-05 45.4 7.7 17 111-127 191-207 (854)
206 2pt7_A CAG-ALFA; ATPase, prote 84.1 0.52 1.8E-05 43.6 2.8 18 109-126 169-186 (330)
207 3cf0_A Transitional endoplasmi 83.7 1.3 4.3E-05 40.4 5.2 55 72-127 10-65 (301)
208 1oyw_A RECQ helicase, ATP-depe 83.4 2.1 7.2E-05 42.4 7.1 75 320-395 65-145 (523)
209 2i1q_A DNA repair and recombin 83.3 2.3 7.7E-05 39.1 6.8 19 111-129 98-116 (322)
210 2ewv_A Twitching motility prot 83.2 0.58 2E-05 44.2 2.8 19 109-127 134-152 (372)
211 3hjh_A Transcription-repair-co 83.0 1.2 4.2E-05 43.4 5.1 52 110-174 13-64 (483)
212 2i4i_A ATP-dependent RNA helic 83.0 10 0.00036 35.7 11.8 72 148-229 275-350 (417)
213 1wrb_A DJVLGB; RNA helicase, D 82.9 12 0.00041 32.5 11.3 74 320-397 100-182 (253)
214 1gku_B Reverse gyrase, TOP-RG; 82.7 3.1 0.00011 45.1 8.5 77 319-397 98-183 (1054)
215 2d7d_A Uvrabc system protein B 82.4 18 0.00061 36.9 13.6 79 148-236 444-526 (661)
216 4ag6_A VIRB4 ATPase, type IV s 82.4 0.99 3.4E-05 42.9 4.1 42 110-161 34-75 (392)
217 2v1x_A ATP-dependent DNA helic 82.3 2.3 7.9E-05 42.8 6.9 59 320-379 84-144 (591)
218 1rj9_A FTSY, signal recognitio 81.7 1.3 4.4E-05 40.4 4.4 26 111-138 102-127 (304)
219 1kgd_A CASK, peripheral plasma 81.5 0.72 2.5E-05 38.3 2.5 18 110-127 4-21 (180)
220 1lvg_A Guanylate kinase, GMP k 81.4 0.89 3E-05 38.5 3.0 18 110-127 3-20 (198)
221 3iuy_A Probable ATP-dependent 81.4 4 0.00014 35.0 7.4 75 319-397 93-175 (228)
222 2oxc_A Probable ATP-dependent 81.1 4.6 0.00016 34.8 7.7 73 319-396 91-173 (230)
223 4b4t_L 26S protease subunit RP 81.0 1.8 6.1E-05 41.6 5.3 54 71-127 175-231 (437)
224 2zts_A Putative uncharacterize 80.9 1.2 4E-05 39.0 3.8 20 110-129 29-48 (251)
225 2qmh_A HPR kinase/phosphorylas 80.7 0.74 2.5E-05 38.8 2.2 19 110-128 33-51 (205)
226 1jbk_A CLPB protein; beta barr 80.7 0.76 2.6E-05 38.1 2.4 17 111-127 43-59 (195)
227 3a8t_A Adenylate isopentenyltr 80.7 0.63 2.2E-05 42.9 1.9 17 112-128 41-57 (339)
228 1xwi_A SKD1 protein; VPS4B, AA 80.6 2.4 8.1E-05 39.0 5.9 50 72-127 7-61 (322)
229 1xti_A Probable ATP-dependent 80.5 8.6 0.00029 35.9 10.0 75 320-397 76-160 (391)
230 3i5x_A ATP-dependent RNA helic 80.5 16 0.00056 36.1 12.6 80 147-233 337-420 (563)
231 4b4t_K 26S protease regulatory 80.5 2.1 7.2E-05 41.0 5.6 54 71-127 166-222 (428)
232 3i32_A Heat resistant RNA depe 80.3 5.2 0.00018 36.3 7.9 74 149-232 28-105 (300)
233 3vaa_A Shikimate kinase, SK; s 80.3 0.82 2.8E-05 38.7 2.4 19 110-128 24-42 (199)
234 4b4t_I 26S protease regulatory 80.3 0.62 2.1E-05 44.4 1.8 54 71-127 176-232 (437)
235 1qhx_A CPT, protein (chloramph 80.2 0.64 2.2E-05 38.3 1.7 18 111-128 3-20 (178)
236 3trf_A Shikimate kinase, SK; a 80.1 0.81 2.8E-05 38.0 2.3 19 111-129 5-23 (185)
237 3nbx_X ATPase RAVA; AAA+ ATPas 79.9 0.79 2.7E-05 45.0 2.5 25 103-127 33-57 (500)
238 3iij_A Coilin-interacting nucl 79.8 0.8 2.7E-05 37.9 2.2 20 109-128 9-28 (180)
239 1u0j_A DNA replication protein 79.7 3 0.0001 37.0 5.9 43 83-128 73-121 (267)
240 3tau_A Guanylate kinase, GMP k 79.6 0.88 3E-05 38.8 2.4 18 110-127 7-24 (208)
241 2bjv_A PSP operon transcriptio 79.6 1.1 3.8E-05 39.7 3.2 18 110-127 28-45 (265)
242 3nwn_A Kinesin-like protein KI 79.4 1 3.6E-05 41.9 3.0 25 104-128 96-122 (359)
243 2pl3_A Probable ATP-dependent 79.2 5.5 0.00019 34.3 7.6 73 319-396 96-178 (236)
244 1tue_A Replication protein E1; 79.2 0.82 2.8E-05 38.8 2.0 72 45-134 5-80 (212)
245 3b9p_A CG5977-PA, isoform A; A 79.2 3 0.0001 37.6 6.1 54 72-128 16-71 (297)
246 3sqw_A ATP-dependent RNA helic 79.0 9.6 0.00033 38.1 10.3 79 148-233 287-369 (579)
247 3hws_A ATP-dependent CLP prote 78.9 2.8 9.5E-05 39.2 5.9 19 110-128 50-68 (363)
248 3fht_A ATP-dependent RNA helic 78.9 8.2 0.00028 36.3 9.4 74 149-232 266-343 (412)
249 3uk6_A RUVB-like 2; hexameric 78.8 1.5 5.1E-05 41.1 4.0 18 111-128 70-87 (368)
250 2px0_A Flagellar biosynthesis 78.4 1.9 6.5E-05 39.1 4.4 20 110-129 104-123 (296)
251 3b9q_A Chloroplast SRP recepto 78.1 1.4 4.7E-05 40.2 3.3 26 110-137 99-124 (302)
252 3bor_A Human initiation factor 78.1 5.1 0.00017 34.7 7.0 76 319-397 97-181 (237)
253 1c4o_A DNA nucleotide excision 78.1 25 0.00087 35.7 13.1 78 148-235 438-519 (664)
254 3ly5_A ATP-dependent RNA helic 78.1 11 0.00038 33.1 9.4 74 319-396 125-208 (262)
255 2r44_A Uncharacterized protein 78.0 0.73 2.5E-05 42.6 1.5 21 107-127 42-62 (331)
256 3exa_A TRNA delta(2)-isopenten 78.0 0.87 3E-05 41.5 1.9 17 112-128 4-20 (322)
257 1bg2_A Kinesin; motor protein, 77.9 1.3 4.3E-05 40.8 3.0 24 105-128 70-95 (325)
258 1ofh_A ATP-dependent HSL prote 77.8 3.8 0.00013 37.0 6.3 19 110-128 49-67 (310)
259 1y63_A LMAJ004144AAA protein; 77.6 1.1 3.8E-05 37.3 2.4 19 110-128 9-27 (184)
260 3tr0_A Guanylate kinase, GMP k 77.5 1.3 4.6E-05 37.3 2.9 18 110-127 6-23 (205)
261 3pey_A ATP-dependent RNA helic 77.4 12 0.0004 34.9 9.9 77 148-234 242-322 (395)
262 3lw7_A Adenylate kinase relate 77.3 0.82 2.8E-05 37.4 1.5 16 113-128 3-18 (179)
263 3foz_A TRNA delta(2)-isopenten 77.1 1 3.5E-05 40.9 2.1 16 113-128 12-27 (316)
264 1z6g_A Guanylate kinase; struc 77.0 1.5 5E-05 37.8 3.1 19 109-127 21-39 (218)
265 3cmw_A Protein RECA, recombina 76.9 1.2 4E-05 50.3 2.9 51 110-173 1430-1480(1706)
266 1kag_A SKI, shikimate kinase I 76.8 1.3 4.4E-05 36.2 2.6 17 111-127 4-20 (173)
267 2ze6_A Isopentenyl transferase 76.7 1.1 3.7E-05 39.7 2.2 16 113-128 3-18 (253)
268 2r8r_A Sensor protein; KDPD, P 76.6 2.2 7.6E-05 36.8 4.0 21 113-133 8-28 (228)
269 2j41_A Guanylate kinase; GMP, 76.6 1.2 4E-05 37.7 2.3 19 109-127 4-22 (207)
270 3dc4_A Kinesin-like protein NO 76.4 1.3 4.6E-05 40.9 2.7 24 105-128 87-112 (344)
271 3ney_A 55 kDa erythrocyte memb 76.3 1.3 4.5E-05 37.4 2.5 18 110-127 18-35 (197)
272 1zp6_A Hypothetical protein AT 76.3 1 3.5E-05 37.6 1.8 19 109-127 7-25 (191)
273 2vvg_A Kinesin-2; motor protei 76.3 1.5 5.1E-05 40.8 3.0 23 106-128 83-107 (350)
274 1t5c_A CENP-E protein, centrom 76.3 1.5 5E-05 40.8 3.0 24 105-128 70-95 (349)
275 2h58_A Kinesin-like protein KI 76.3 1.5 5.1E-05 40.4 3.0 26 103-128 71-98 (330)
276 3b6u_A Kinesin-like protein KI 76.3 1.5 5E-05 41.1 3.0 24 105-128 94-119 (372)
277 1tf7_A KAIC; homohexamer, hexa 76.2 17 0.00057 35.9 10.9 19 109-127 279-297 (525)
278 1goj_A Kinesin, kinesin heavy 76.2 1.5 5.1E-05 40.9 3.0 24 105-128 73-98 (355)
279 1f9v_A Kinesin-like protein KA 76.1 1.5 5.3E-05 40.6 3.1 25 104-128 76-102 (347)
280 2nr8_A Kinesin-like protein KI 76.1 1.5 5.1E-05 40.9 3.0 25 104-128 95-121 (358)
281 1yks_A Genome polyprotein [con 76.0 4.3 0.00015 39.1 6.5 68 149-228 177-245 (440)
282 2qor_A Guanylate kinase; phosp 76.0 1.4 4.8E-05 37.3 2.7 19 109-127 10-28 (204)
283 3gbj_A KIF13B protein; kinesin 76.0 1.5 5.1E-05 40.8 3.0 25 104-128 84-110 (354)
284 3d8b_A Fidgetin-like protein 1 76.0 3.5 0.00012 38.4 5.7 73 45-128 59-134 (357)
285 1v8k_A Kinesin-like protein KI 75.8 1.5 5.1E-05 41.6 3.0 23 106-128 148-172 (410)
286 3lre_A Kinesin-like protein KI 75.8 1.5 5.3E-05 40.8 3.0 24 105-128 98-123 (355)
287 2y65_A Kinesin, kinesin heavy 75.8 1.6 5.3E-05 40.9 3.0 24 105-128 77-102 (365)
288 2zfi_A Kinesin-like protein KI 75.7 1.5 5.3E-05 40.9 3.0 24 105-128 82-107 (366)
289 3t0q_A AGR253WP; kinesin, alph 75.7 1.5 5.2E-05 40.7 2.9 25 104-128 77-103 (349)
290 1w36_B RECB, exodeoxyribonucle 75.7 3.9 0.00013 44.9 6.7 60 113-172 18-79 (1180)
291 3hr8_A Protein RECA; alpha and 75.7 1.9 6.5E-05 40.2 3.6 42 110-161 60-101 (356)
292 4etp_A Kinesin-like protein KA 75.6 1.7 5.7E-05 41.3 3.2 25 104-128 132-158 (403)
293 2x8a_A Nuclear valosin-contain 75.6 0.57 2E-05 42.1 0.0 53 72-127 5-60 (274)
294 1x88_A Kinesin-like protein KI 75.6 1.4 4.9E-05 41.0 2.8 24 105-128 81-106 (359)
295 3c8u_A Fructokinase; YP_612366 75.4 1.6 5.5E-05 37.1 2.9 26 110-137 21-46 (208)
296 2qz4_A Paraplegin; AAA+, SPG7, 75.3 1.3 4.6E-05 39.0 2.4 19 110-128 38-56 (262)
297 2c9o_A RUVB-like 1; hexameric 75.0 2.2 7.5E-05 41.4 4.0 19 110-128 62-80 (456)
298 1ixz_A ATP-dependent metallopr 75.0 1.1 3.6E-05 39.6 1.6 54 71-127 10-65 (254)
299 4a14_A Kinesin, kinesin-like p 74.8 1.7 6E-05 40.2 3.1 24 105-128 76-101 (344)
300 1ex7_A Guanylate kinase; subst 74.6 1.2 4.1E-05 37.3 1.8 16 112-127 2-17 (186)
301 2ius_A DNA translocase FTSK; n 74.6 3.5 0.00012 40.4 5.3 18 111-128 167-184 (512)
302 1lv7_A FTSH; alpha/beta domain 74.4 1.1 3.8E-05 39.5 1.7 17 111-127 45-61 (257)
303 2og2_A Putative signal recogni 74.4 1.9 6.6E-05 40.2 3.3 25 111-137 157-181 (359)
304 3fmo_B ATP-dependent RNA helic 74.4 8.8 0.0003 34.7 7.7 71 320-397 162-243 (300)
305 1znw_A Guanylate kinase, GMP k 74.4 1.8 6E-05 36.8 2.8 28 107-136 16-43 (207)
306 3cob_A Kinesin heavy chain-lik 74.3 1.5 5E-05 41.1 2.4 25 104-128 71-97 (369)
307 2wbe_C Bipolar kinesin KRP-130 74.2 1.6 5.4E-05 41.0 2.7 23 106-128 94-118 (373)
308 3a00_A Guanylate kinase, GMP k 73.9 1.7 5.6E-05 36.2 2.5 16 112-127 2-17 (186)
309 1kht_A Adenylate kinase; phosp 73.9 1.5 5.2E-05 36.4 2.3 17 111-127 3-19 (192)
310 1ojl_A Transcriptional regulat 73.8 1.8 6E-05 39.5 2.9 18 110-127 24-41 (304)
311 1vma_A Cell division protein F 73.5 2.1 7.2E-05 39.0 3.3 17 112-128 105-121 (306)
312 2heh_A KIF2C protein; kinesin, 73.5 1.8 6.2E-05 40.7 2.9 25 105-129 127-153 (387)
313 1s2m_A Putative ATP-dependent 73.5 14 0.00049 34.5 9.4 74 148-231 257-334 (400)
314 2yvu_A Probable adenylyl-sulfa 73.4 2.3 7.8E-05 35.3 3.3 19 110-128 12-30 (186)
315 1wp9_A ATP-dependent RNA helic 73.4 9.5 0.00033 36.6 8.3 74 319-397 51-133 (494)
316 3crm_A TRNA delta(2)-isopenten 73.4 1.5 5E-05 40.3 2.1 16 113-128 7-22 (323)
317 2zr9_A Protein RECA, recombina 73.4 2.9 9.9E-05 38.9 4.3 39 110-158 60-98 (349)
318 3kb2_A SPBC2 prophage-derived 73.3 1.5 5.2E-05 35.7 2.1 16 113-128 3-18 (173)
319 2j0s_A ATP-dependent RNA helic 73.3 14 0.00049 34.7 9.3 73 149-231 276-352 (410)
320 1ly1_A Polynucleotide kinase; 73.2 1.2 4.2E-05 36.6 1.5 16 113-128 4-19 (181)
321 3u06_A Protein claret segregat 73.2 1.7 6E-05 41.2 2.7 26 103-128 129-156 (412)
322 3bfn_A Kinesin-like protein KI 73.1 1.5 5.2E-05 41.2 2.3 22 107-128 93-116 (388)
323 1u94_A RECA protein, recombina 73.1 3 0.0001 38.9 4.3 39 110-158 62-100 (356)
324 4eun_A Thermoresistant glucoki 73.0 1.7 5.9E-05 36.6 2.4 18 110-127 28-45 (200)
325 2owm_A Nckin3-434, related to 72.8 2 6.8E-05 41.3 3.0 23 106-128 130-154 (443)
326 1ye8_A Protein THEP1, hypothet 72.6 2.1 7.2E-05 35.4 2.8 15 113-127 2-16 (178)
327 1hv8_A Putative ATP-dependent 72.6 9.2 0.00032 35.2 7.7 75 148-232 237-315 (367)
328 4gp7_A Metallophosphoesterase; 72.6 1.2 4E-05 36.7 1.2 18 110-127 8-25 (171)
329 2db3_A ATP-dependent RNA helic 72.6 13 0.00045 35.5 8.9 71 151-231 302-376 (434)
330 2rep_A Kinesin-like protein KI 72.5 2 6.8E-05 40.3 2.9 25 104-128 107-133 (376)
331 3tif_A Uncharacterized ABC tra 72.4 1.5 5.1E-05 38.2 1.9 23 110-134 30-52 (235)
332 3dkp_A Probable ATP-dependent 72.2 4.7 0.00016 35.0 5.2 76 319-397 97-183 (245)
333 1knq_A Gluconate kinase; ALFA/ 71.8 1.6 5.3E-05 35.8 1.8 17 111-127 8-24 (175)
334 3d3q_A TRNA delta(2)-isopenten 71.7 1.7 5.8E-05 40.2 2.2 16 113-128 9-24 (340)
335 3cm0_A Adenylate kinase; ATP-b 71.6 1.3 4.6E-05 36.6 1.4 19 110-128 3-21 (186)
336 1s96_A Guanylate kinase, GMP k 71.5 2.2 7.6E-05 36.7 2.8 20 108-127 13-32 (219)
337 3t15_A Ribulose bisphosphate c 71.5 1.6 5.6E-05 39.4 2.1 16 112-127 37-52 (293)
338 1um8_A ATP-dependent CLP prote 71.4 2 6.7E-05 40.5 2.7 19 110-128 71-89 (376)
339 2v9p_A Replication protein E1; 71.4 2.3 7.8E-05 38.7 2.9 25 110-136 125-149 (305)
340 1zuh_A Shikimate kinase; alpha 71.3 1.9 6.4E-05 35.1 2.2 18 112-129 8-25 (168)
341 3nwj_A ATSK2; P loop, shikimat 71.3 2.3 7.7E-05 37.5 2.8 18 110-127 47-64 (250)
342 1qde_A EIF4A, translation init 71.0 7.2 0.00025 33.2 6.1 74 319-397 81-163 (224)
343 1iy2_A ATP-dependent metallopr 71.0 1.4 5E-05 39.4 1.6 53 72-127 35-89 (278)
344 3lnc_A Guanylate kinase, GMP k 71.0 2 6.8E-05 37.2 2.4 19 109-127 25-43 (231)
345 2i3b_A HCR-ntpase, human cance 70.8 2.8 9.6E-05 35.0 3.2 41 221-263 103-145 (189)
346 2yhs_A FTSY, cell division pro 70.5 2.6 8.8E-05 41.0 3.2 24 112-137 294-317 (503)
347 2iut_A DNA translocase FTSK; n 70.4 5.1 0.00017 39.8 5.4 26 111-137 214-239 (574)
348 2ehv_A Hypothetical protein PH 70.4 4.1 0.00014 35.4 4.4 20 109-128 28-47 (251)
349 2r2a_A Uncharacterized protein 70.3 2.3 7.7E-05 36.0 2.5 16 114-129 8-23 (199)
350 3uie_A Adenylyl-sulfate kinase 70.3 1.8 6.2E-05 36.5 1.9 18 110-127 24-41 (200)
351 1xjc_A MOBB protein homolog; s 70.2 3.4 0.00012 33.8 3.5 15 113-127 6-20 (169)
352 4akg_A Glutathione S-transfera 70.0 3.9 0.00013 48.5 5.1 49 81-130 890-942 (2695)
353 4fcw_A Chaperone protein CLPB; 69.7 3.8 0.00013 37.1 4.2 17 112-128 48-64 (311)
354 2rhm_A Putative kinase; P-loop 69.6 1.5 5E-05 36.6 1.2 18 111-128 5-22 (193)
355 1zu4_A FTSY; GTPase, signal re 69.5 2.9 0.0001 38.3 3.3 18 111-128 105-122 (320)
356 1f2t_A RAD50 ABC-ATPase; DNA d 69.5 2.8 9.5E-05 33.5 2.8 15 113-127 25-39 (149)
357 3ice_A Transcription terminati 69.2 6.4 0.00022 37.0 5.5 27 101-127 161-190 (422)
358 3eph_A TRNA isopentenyltransfe 69.1 2 6.8E-05 40.6 2.1 16 113-128 4-19 (409)
359 2l82_A Designed protein OR32; 68.9 25 0.00084 25.6 7.3 117 323-445 5-130 (162)
360 2v6i_A RNA helicase; membrane, 68.9 11 0.00038 36.1 7.4 67 149-227 171-238 (431)
361 3kta_A Chromosome segregation 68.9 2.6 8.9E-05 34.7 2.6 23 113-137 28-50 (182)
362 3u4q_B ATP-dependent helicase/ 68.9 3.6 0.00012 45.2 4.4 40 114-160 4-43 (1166)
363 3vkg_A Dynein heavy chain, cyt 68.9 4.3 0.00015 48.8 5.1 48 81-129 873-924 (3245)
364 1gvn_B Zeta; postsegregational 68.9 1.8 6.3E-05 39.0 1.8 17 112-128 34-50 (287)
365 1xp8_A RECA protein, recombina 68.8 4.2 0.00014 38.0 4.3 40 110-159 73-112 (366)
366 3asz_A Uridine kinase; cytidin 68.8 2.6 8.8E-05 35.7 2.6 17 111-127 6-22 (211)
367 1via_A Shikimate kinase; struc 68.7 2.5 8.4E-05 34.7 2.4 17 112-128 5-21 (175)
368 1g8p_A Magnesium-chelatase 38 68.4 1.5 5E-05 40.7 1.1 18 110-127 44-61 (350)
369 2ff7_A Alpha-hemolysin translo 68.4 2.1 7.1E-05 37.7 1.9 23 110-134 34-56 (247)
370 2c95_A Adenylate kinase 1; tra 68.4 2.4 8.3E-05 35.3 2.3 19 110-128 8-26 (196)
371 3tqc_A Pantothenate kinase; bi 68.3 7.8 0.00027 35.4 5.9 22 114-137 95-116 (321)
372 1nij_A Hypothetical protein YJ 68.0 3.7 0.00013 37.6 3.7 14 114-127 7-20 (318)
373 3t61_A Gluconokinase; PSI-biol 67.9 2.3 8E-05 35.8 2.1 17 112-128 19-35 (202)
374 1tev_A UMP-CMP kinase; ploop, 67.6 2.1 7.3E-05 35.6 1.8 18 111-128 3-20 (196)
375 1m7g_A Adenylylsulfate kinase; 67.3 2.9 0.0001 35.5 2.7 29 98-127 13-41 (211)
376 3nh6_A ATP-binding cassette SU 67.1 1.4 4.9E-05 40.1 0.7 25 110-136 79-103 (306)
377 2v54_A DTMP kinase, thymidylat 67.1 2.8 9.4E-05 35.2 2.5 18 110-127 3-20 (204)
378 4g1u_C Hemin import ATP-bindin 67.1 2.6 9E-05 37.4 2.4 23 110-134 36-58 (266)
379 1sky_E F1-ATPase, F1-ATP synth 67.1 6.6 0.00022 37.9 5.2 21 108-128 148-168 (473)
380 2iyv_A Shikimate kinase, SK; t 67.0 2.9 0.0001 34.4 2.6 17 112-128 3-19 (184)
381 3gfo_A Cobalt import ATP-bindi 67.0 2.2 7.6E-05 38.1 1.9 23 110-134 33-55 (275)
382 2vli_A Antibiotic resistance p 67.0 2.1 7.2E-05 35.3 1.6 18 111-128 5-22 (183)
383 2yjt_D ATP-dependent RNA helic 70.3 1.2 4E-05 36.6 0.0 74 148-231 29-106 (170)
384 2wv9_A Flavivirin protease NS2 66.9 9.6 0.00033 38.9 6.8 69 149-229 410-479 (673)
385 1aky_A Adenylate kinase; ATP:A 66.7 2.8 9.6E-05 35.9 2.5 18 111-128 4-21 (220)
386 2r62_A Cell division protease 66.7 1.4 4.7E-05 39.2 0.4 18 111-128 44-61 (268)
387 1sgw_A Putative ABC transporte 66.6 2.6 8.9E-05 36.1 2.2 23 110-134 34-56 (214)
388 1mv5_A LMRA, multidrug resista 66.5 2.1 7.3E-05 37.5 1.6 24 110-135 27-50 (243)
389 1zak_A Adenylate kinase; ATP:A 66.3 3 0.0001 35.7 2.6 18 111-128 5-22 (222)
390 3fb4_A Adenylate kinase; psych 66.2 2.6 9E-05 35.8 2.2 16 113-128 2-17 (216)
391 2pcj_A ABC transporter, lipopr 66.2 2.4 8.2E-05 36.6 1.9 23 110-134 29-51 (224)
392 2cvh_A DNA repair and recombin 66.1 2.8 9.7E-05 35.6 2.4 20 110-129 19-38 (220)
393 2pze_A Cystic fibrosis transme 66.1 2.5 8.4E-05 36.7 1.9 23 110-134 33-55 (229)
394 1in4_A RUVB, holliday junction 66.0 2.8 9.5E-05 38.7 2.4 16 112-127 52-67 (334)
395 1c9k_A COBU, adenosylcobinamid 66.0 3 0.0001 34.6 2.3 44 114-171 2-45 (180)
396 1htw_A HI0065; nucleotide-bind 66.0 3.2 0.00011 33.6 2.5 25 110-136 32-56 (158)
397 2bdt_A BH3686; alpha-beta prot 65.9 2.7 9.4E-05 34.9 2.2 16 112-127 3-18 (189)
398 1rz3_A Hypothetical protein rb 65.8 4.4 0.00015 34.1 3.5 16 112-127 23-38 (201)
399 2qt1_A Nicotinamide riboside k 65.4 1.9 6.5E-05 36.5 1.1 19 109-127 19-37 (207)
400 1ry6_A Internal kinesin; kines 65.4 3.2 0.00011 38.6 2.7 19 110-128 82-102 (360)
401 1zd8_A GTP:AMP phosphotransfer 65.2 2.9 0.0001 35.9 2.3 18 111-128 7-24 (227)
402 2ixe_A Antigen peptide transpo 65.2 2.6 8.8E-05 37.6 1.9 24 110-135 44-67 (271)
403 1e6c_A Shikimate kinase; phosp 65.2 3.2 0.00011 33.7 2.4 17 112-128 3-19 (173)
404 3dl0_A Adenylate kinase; phosp 65.1 2.9 9.8E-05 35.6 2.2 16 113-128 2-17 (216)
405 1g6h_A High-affinity branched- 65.0 2.6 9E-05 37.2 1.9 23 110-134 32-54 (257)
406 3k1j_A LON protease, ATP-depen 65.0 3.6 0.00012 41.6 3.2 21 107-127 56-76 (604)
407 1ji0_A ABC transporter; ATP bi 64.8 2.7 9.1E-05 36.7 1.9 23 110-134 31-53 (240)
408 3sr0_A Adenylate kinase; phosp 64.7 3 0.0001 35.5 2.2 16 113-128 2-17 (206)
409 1b0u_A Histidine permease; ABC 64.7 2.7 9.2E-05 37.3 1.9 23 110-134 31-53 (262)
410 1q0u_A Bstdead; DEAD protein, 64.7 5.7 0.0002 33.8 4.1 73 320-396 72-157 (219)
411 2cdn_A Adenylate kinase; phosp 64.6 3.3 0.00011 34.8 2.5 18 111-128 20-37 (201)
412 1nks_A Adenylate kinase; therm 64.5 2.9 0.0001 34.6 2.1 15 113-127 3-17 (194)
413 2pez_A Bifunctional 3'-phospho 64.4 2.8 9.6E-05 34.4 1.9 18 110-127 4-21 (179)
414 2olj_A Amino acid ABC transpor 64.4 2.7 9.4E-05 37.3 1.9 24 110-135 49-72 (263)
415 2v3c_C SRP54, signal recogniti 64.3 5.8 0.0002 38.0 4.3 18 112-129 100-117 (432)
416 1ak2_A Adenylate kinase isoenz 64.3 3.2 0.00011 35.9 2.4 19 110-128 15-33 (233)
417 1cke_A CK, MSSA, protein (cyti 64.1 3 0.0001 35.7 2.2 17 112-128 6-22 (227)
418 3f9v_A Minichromosome maintena 63.9 3.1 0.00011 41.9 2.4 15 113-127 329-343 (595)
419 1vpl_A ABC transporter, ATP-bi 63.8 2.9 9.8E-05 37.0 1.9 23 110-134 40-62 (256)
420 1qf9_A UMP/CMP kinase, protein 63.8 3.1 0.00011 34.4 2.1 16 113-128 8-23 (194)
421 2bwj_A Adenylate kinase 5; pho 63.7 3.3 0.00011 34.6 2.2 19 110-128 11-29 (199)
422 1fuu_A Yeast initiation factor 63.5 25 0.00087 32.6 8.8 73 319-396 88-169 (394)
423 2zan_A Vacuolar protein sortin 63.4 3.1 0.00011 40.1 2.3 53 71-127 128-183 (444)
424 3umf_A Adenylate kinase; rossm 63.3 3.3 0.00011 35.5 2.2 19 110-128 28-46 (217)
425 2cbz_A Multidrug resistance-as 63.0 3.6 0.00012 35.8 2.4 23 110-134 30-52 (237)
426 2wwf_A Thymidilate kinase, put 62.9 3.5 0.00012 34.8 2.3 19 110-128 9-27 (212)
427 2xau_A PRE-mRNA-splicing facto 62.5 17 0.00059 37.8 7.8 76 148-229 302-393 (773)
428 2yz2_A Putative ABC transporte 62.4 3.1 0.00011 36.9 1.9 23 110-134 32-54 (266)
429 2ihy_A ABC transporter, ATP-bi 62.0 3.2 0.00011 37.2 1.9 23 110-134 46-68 (279)
430 3hu3_A Transitional endoplasmi 62.0 2.9 0.0001 40.9 1.8 19 110-128 237-255 (489)
431 2plr_A DTMP kinase, probable t 62.0 3.3 0.00011 35.0 1.9 19 110-128 3-21 (213)
432 3qf7_A RAD50; ABC-ATPase, ATPa 61.9 4.2 0.00014 38.1 2.8 16 113-128 25-40 (365)
433 3be4_A Adenylate kinase; malar 61.9 3.8 0.00013 35.0 2.3 18 111-128 5-22 (217)
434 3pxg_A Negative regulator of g 61.8 5.4 0.00018 38.8 3.7 19 110-128 200-218 (468)
435 4a74_A DNA repair and recombin 61.8 3.2 0.00011 35.6 1.8 18 110-127 24-41 (231)
436 1nn5_A Similar to deoxythymidy 61.7 3.9 0.00013 34.6 2.4 19 110-128 8-26 (215)
437 1jjv_A Dephospho-COA kinase; P 61.7 3.6 0.00012 34.7 2.1 16 113-128 4-19 (206)
438 1g41_A Heat shock protein HSLU 61.5 4.1 0.00014 39.1 2.7 18 111-128 50-67 (444)
439 2j37_W Signal recognition part 61.5 33 0.0011 33.5 9.1 17 113-129 103-119 (504)
440 2f1r_A Molybdopterin-guanine d 61.2 2.3 8E-05 34.9 0.8 15 113-127 4-18 (171)
441 2jaq_A Deoxyguanosine kinase; 61.2 3.7 0.00013 34.3 2.1 15 113-127 2-16 (205)
442 4e22_A Cytidylate kinase; P-lo 61.1 4 0.00014 35.9 2.4 18 110-127 26-43 (252)
443 2ghi_A Transport protein; mult 61.0 4.1 0.00014 36.1 2.4 23 110-134 45-67 (260)
444 1e4v_A Adenylate kinase; trans 61.0 3.6 0.00012 35.0 2.0 16 113-128 2-17 (214)
445 2pt5_A Shikimate kinase, SK; a 60.9 3.9 0.00013 33.0 2.1 16 113-128 2-17 (168)
446 1ukz_A Uridylate kinase; trans 60.6 3.9 0.00013 34.3 2.2 16 113-128 17-32 (203)
447 2jlq_A Serine protease subunit 60.5 12 0.00042 35.9 6.0 68 149-228 188-256 (451)
448 2onk_A Molybdate/tungstate ABC 60.4 4 0.00014 35.6 2.2 23 112-136 25-47 (240)
449 3auy_A DNA double-strand break 60.2 4.5 0.00015 37.9 2.7 22 112-135 26-47 (371)
450 2if2_A Dephospho-COA kinase; a 60.1 3.9 0.00013 34.3 2.1 15 113-127 3-17 (204)
451 3qks_A DNA double-strand break 59.9 5.1 0.00018 33.8 2.8 25 112-138 24-48 (203)
452 3a4m_A L-seryl-tRNA(SEC) kinas 59.9 3.2 0.00011 36.7 1.5 17 112-128 5-21 (260)
453 1j8m_F SRP54, signal recogniti 59.7 6.3 0.00022 35.6 3.5 18 112-129 99-116 (297)
454 2p5t_B PEZT; postsegregational 59.4 3 0.0001 36.7 1.3 16 112-127 33-48 (253)
455 2pbr_A DTMP kinase, thymidylat 59.4 4.2 0.00014 33.7 2.1 15 114-128 3-17 (195)
456 3aez_A Pantothenate kinase; tr 59.3 4.7 0.00016 36.8 2.6 27 110-138 89-115 (312)
457 1uf9_A TT1252 protein; P-loop, 59.2 4.1 0.00014 34.0 2.1 16 113-128 10-25 (203)
458 3fvq_A Fe(3+) IONS import ATP- 59.1 4.5 0.00015 37.7 2.4 25 110-136 29-53 (359)
459 1v5w_A DMC1, meiotic recombina 59.0 5.3 0.00018 37.0 3.0 51 105-159 111-166 (343)
460 3cf2_A TER ATPase, transitiona 59.0 4.8 0.00016 41.9 2.8 55 70-127 470-527 (806)
461 4f4c_A Multidrug resistance pr 58.8 4.6 0.00016 44.9 2.9 26 110-137 1104-1129(1321)
462 3tlx_A Adenylate kinase 2; str 58.5 4.4 0.00015 35.4 2.2 18 111-128 29-46 (243)
463 2ffh_A Protein (FFH); SRP54, s 58.5 7.5 0.00026 37.1 3.9 17 112-128 99-115 (425)
464 2z0h_A DTMP kinase, thymidylat 58.4 4.5 0.00015 33.6 2.2 15 114-128 3-17 (197)
465 3b5x_A Lipid A export ATP-bind 58.4 5.9 0.0002 39.7 3.4 25 110-136 368-392 (582)
466 3eiq_A Eukaryotic initiation f 58.3 21 0.0007 33.5 7.1 75 319-396 107-190 (414)
467 2ce7_A Cell division protein F 58.2 3.4 0.00012 40.2 1.5 16 112-127 50-65 (476)
468 2bbw_A Adenylate kinase 4, AK4 58.2 4.9 0.00017 35.0 2.5 17 111-127 27-43 (246)
469 1z47_A CYSA, putative ABC-tran 58.1 4.8 0.00017 37.4 2.5 25 110-136 40-64 (355)
470 2yyz_A Sugar ABC transporter, 58.1 4.8 0.00016 37.5 2.5 25 110-136 28-52 (359)
471 2whx_A Serine protease/ntpase/ 58.0 26 0.00088 35.3 8.0 68 149-228 355-423 (618)
472 4a2p_A RIG-I, retinoic acid in 58.0 21 0.00072 35.1 7.4 74 320-397 55-138 (556)
473 1np6_A Molybdopterin-guanine d 58.0 7.8 0.00027 31.8 3.5 15 113-127 8-22 (174)
474 2zu0_C Probable ATP-dependent 57.7 5.3 0.00018 35.5 2.6 23 110-134 45-67 (267)
475 2xb4_A Adenylate kinase; ATP-b 57.7 4.6 0.00016 34.6 2.1 16 113-128 2-17 (223)
476 2d2e_A SUFC protein; ABC-ATPas 57.6 5.4 0.00018 35.0 2.6 23 110-134 28-50 (250)
477 3rlf_A Maltose/maltodextrin im 57.5 5 0.00017 37.7 2.5 29 223-251 151-179 (381)
478 1odf_A YGR205W, hypothetical 3 57.5 5.8 0.0002 35.7 2.8 15 113-127 33-47 (290)
479 2grj_A Dephospho-COA kinase; T 57.4 4.9 0.00017 33.7 2.2 16 113-128 14-29 (192)
480 2qi9_C Vitamin B12 import ATP- 57.3 5.2 0.00018 35.1 2.4 23 110-134 25-47 (249)
481 2it1_A 362AA long hypothetical 56.9 5.2 0.00018 37.3 2.5 31 221-251 149-179 (362)
482 3tqf_A HPR(Ser) kinase; transf 56.2 4.6 0.00016 33.2 1.7 20 110-129 15-34 (181)
483 1v43_A Sugar-binding transport 56.2 5.4 0.00018 37.4 2.5 31 221-251 157-187 (372)
484 2chq_A Replication factor C sm 56.2 8.3 0.00028 34.8 3.8 15 113-127 40-54 (319)
485 4gl2_A Interferon-induced heli 56.0 4.8 0.00016 41.3 2.3 73 320-396 56-143 (699)
486 2nq2_C Hypothetical ABC transp 55.9 5.5 0.00019 35.0 2.4 23 110-134 30-52 (253)
487 3tui_C Methionine import ATP-b 55.8 5.6 0.00019 37.1 2.5 25 110-136 53-77 (366)
488 3gk5_A Uncharacterized rhodane 55.5 10 0.00035 28.0 3.5 38 318-356 53-90 (108)
489 1vht_A Dephospho-COA kinase; s 55.4 4.2 0.00014 34.6 1.5 16 113-128 6-21 (218)
490 1g29_1 MALK, maltose transport 55.3 5.7 0.00019 37.2 2.5 30 222-251 156-185 (372)
491 4h1g_A Maltose binding protein 55.2 6.5 0.00022 40.5 3.1 25 104-128 454-480 (715)
492 2vhj_A Ntpase P4, P4; non- hyd 55.0 5.1 0.00017 36.6 2.0 20 110-129 122-141 (331)
493 3p32_A Probable GTPase RV1496/ 54.1 1.1E+02 0.0038 28.0 11.2 16 113-128 81-96 (355)
494 3qf4_B Uncharacterized ABC tra 53.7 5.7 0.00019 40.0 2.3 24 110-135 380-403 (598)
495 3b60_A Lipid A export ATP-bind 53.1 5.6 0.00019 39.9 2.2 25 110-136 368-392 (582)
496 2yl4_A ATP-binding cassette SU 53.0 5.9 0.0002 39.9 2.3 24 110-135 369-392 (595)
497 3tbk_A RIG-I helicase domain; 53.0 24 0.00083 34.6 6.9 78 148-231 388-478 (555)
498 1wv9_A Rhodanese homolog TT165 52.5 13 0.00043 26.6 3.5 35 321-356 54-88 (94)
499 4eaq_A DTMP kinase, thymidylat 52.4 12 0.00039 32.3 3.8 18 110-127 25-42 (229)
500 4akg_A Glutathione S-transfera 52.4 4.8 0.00017 47.8 1.7 20 109-128 1265-1284(2695)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4e-68 Score=525.67 Aligned_cols=391 Identities=34% Similarity=0.616 Sum_probs=359.4
Q ss_pred HhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 58 KRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 58 ~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.+..+.+.|...|.|+.+|++++|++.+++++.+.||..|+|+|.++|+.+++|+|++++||||||||++|++|++.++.
T Consensus 40 ~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 40 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp GGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC
Q 012059 138 NIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH 217 (472)
Q Consensus 138 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~ 217 (472)
..... ....++++||++||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++|.+++.+.
T Consensus 120 ~~~~~--~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 197 (434)
T 2db3_A 120 EDPHE--LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197 (434)
T ss_dssp HSCCC--CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred hcccc--cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC
Confidence 63211 1234678999999999999999999999988888999999999988888888889999999999999999988
Q ss_pred CCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC---CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCcccee
Q 012059 218 DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVK 294 (472)
Q Consensus 218 ~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 294 (472)
...+.++++||+||||++.+++|...+..++..+ +..|++++|||+++.+..++..++.++..+...........+.
T Consensus 198 ~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 277 (434)
T 2db3_A 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVK 277 (434)
T ss_dssp SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEE
T ss_pred CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccc
Confidence 8889999999999999999999999999999875 6789999999999999999999999999988887776777788
Q ss_pred EEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 012059 295 QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 374 (472)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 374 (472)
+.+..+....+...+.+++.... .++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+.+|
T Consensus 278 ~~~~~~~~~~k~~~l~~~l~~~~---~~~lVF~~t~~~a~~l~~~L~-~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 353 (434)
T 2db3_A 278 QTIYEVNKYAKRSKLIEILSEQA---DGTIVFVETKRGADFLASFLS-EKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353 (434)
T ss_dssp EEEEECCGGGHHHHHHHHHHHCC---TTEEEECSSHHHHHHHHHHHH-HTTCCEEEESTTSCHHHHHHHHHHHHTSSCSE
T ss_pred eEEEEeCcHHHHHHHHHHHHhCC---CCEEEEEeCcHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 88888888888889988887654 359999999999999999998 77999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEc-CCChHHHHHHHHHHHHcCCCCCHHHHh
Q 012059 375 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN-EENKNLFQELVDILKSSGAGIPRELIN 453 (472)
Q Consensus 375 LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~l~~ 453 (472)
||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|++ ..+......+.+.++..++++|++|.+
T Consensus 354 LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 457889999999999999999999875
Q ss_pred c
Q 012059 454 S 454 (472)
Q Consensus 454 ~ 454 (472)
+
T Consensus 434 ~ 434 (434)
T 2db3_A 434 C 434 (434)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-62 Score=486.64 Aligned_cols=395 Identities=34% Similarity=0.616 Sum_probs=352.7
Q ss_pred CceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhh
Q 012059 61 EINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIR 140 (472)
Q Consensus 61 ~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~ 140 (472)
.+.+.|...|.+..+|+++++++.+.+.|...||..|+|+|.++++.+++++++++.+|||||||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred hc-----------ccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHH
Q 012059 141 LH-----------HSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGR 209 (472)
Q Consensus 141 ~~-----------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~ 209 (472)
.. ......++++||++||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 0011234789999999999999999999999888899999999999888888888889999999999
Q ss_pred HHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--C---CCceEeecccccHHHHHHHhhhcCCcEEEEeC
Q 012059 210 LIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S---LPQILMYSATISQEVEKMSSSISKDIVVVSVG 284 (472)
Q Consensus 210 l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 284 (472)
|.+++......+.++++||+||||++.+++|...+..++... + ..+++++|||+++.+..+...++.++..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999999888888999999999999999999999999998754 2 57899999999999999999999988888777
Q ss_pred CCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHH
Q 012059 285 KPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIM 364 (472)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~ 364 (472)
........+.+.+..+....+...+.+++... ..++++||||+++..++.++..|. ..++.+..+||++++++|..++
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 242 RVGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLY-HEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCCccCceEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHH-HCCCCeeEecCCCCHHHHHHHH
Confidence 66666677788888888888888888887664 346689999999999999999998 6799999999999999999999
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcC
Q 012059 365 RSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 444 (472)
Q Consensus 365 ~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 444 (472)
+.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.+...+
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhchhh
Q 012059 445 AGIPRELINSRYT 457 (472)
Q Consensus 445 ~~~~~~l~~~~~~ 457 (472)
+++|.++.+++..
T Consensus 400 ~~~~~~l~~~~~~ 412 (417)
T 2i4i_A 400 QEVPSWLENMAYE 412 (417)
T ss_dssp CCCCHHHHHHHTC
T ss_pred CcCCHHHHHHHHh
Confidence 9999999888754
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.7e-59 Score=462.70 Aligned_cols=373 Identities=27% Similarity=0.551 Sum_probs=335.6
Q ss_pred CCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCC
Q 012059 69 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 148 (472)
Q Consensus 69 ~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 148 (472)
.+.+..+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ...
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------~~~ 104 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------QVR 104 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------TSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------ccC
Confidence 3455678999999999999999999999999999999999999999999999999999999999986532 134
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 228 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iV 228 (472)
+.++||++||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||+++.+++......+.++++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 67899999999999999999999998888999999999998888888888899999999999999998888888999999
Q ss_pred EeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchh-HH
Q 012059 229 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KK 306 (472)
Q Consensus 229 vDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 306 (472)
+||||++.++++...+..++..+ +..+++++|||++..+..+...++.++..+...........+.+.+..+.... +.
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHH
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999998888 57899999999999998888888888888776666556666777777666554 66
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 386 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 386 (472)
..+..++.... .+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 265 ~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 265 DTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMR-EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHH-hCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 67777776543 3589999999999999999998 67999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHH
Q 012059 387 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPREL 451 (472)
Q Consensus 387 i~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 451 (472)
+|++++||++|.|.+...|+||+||+||.|+.|.|++|+++.+...++.+.++++....++|.+.
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 99999999999999999999999999999999999999999999999999999988877777543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-58 Score=454.60 Aligned_cols=377 Identities=32% Similarity=0.556 Sum_probs=322.0
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCC
Q 012059 67 DAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 146 (472)
Q Consensus 67 ~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~ 146 (472)
...+....+|+++++++.+.+.+...||..|+++|.++++.+++|+++++.+|||+|||++|++|++..+.. .
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------~ 105 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------D 105 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------T
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------c
Confidence 344566778999999999999999999999999999999999999999999999999999999999987643 1
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcCCCCCCCee
Q 012059 147 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIR 225 (472)
Q Consensus 147 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~ 225 (472)
..+.++||++|+++|+.|+.+.++.++...+..+..++|+.........+. .+++|+|+||++|.+.+......+.+++
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~ 185 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK 185 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCC
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 346789999999999999999999999888889999999988887777666 6689999999999999998888888999
Q ss_pred EEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchh
Q 012059 226 MFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK 304 (472)
Q Consensus 226 ~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 304 (472)
+||+||||++.++++...+..++..+ +..+++++|||++..+..+...++.++..+...........+.+.+.......
T Consensus 186 ~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp EEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred EEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH
Confidence 99999999999999999999999888 78899999999999999999999999988877776666666777766665544
Q ss_pred -HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 012059 305 -KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 383 (472)
Q Consensus 305 -~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 383 (472)
+...+..++... ..+++||||+++..++.+++.|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 342 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMH-ARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHH-TTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC-
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHH-hcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcccc
Confidence 666677766554 34689999999999999999998 77899999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHh
Q 012059 384 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELIN 453 (472)
Q Consensus 384 Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 453 (472)
|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|+++.+...+..+.++++....++|.++.+
T Consensus 343 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp -CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC----
T ss_pred CCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998888887655
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.2e-57 Score=447.91 Aligned_cols=373 Identities=29% Similarity=0.508 Sum_probs=328.1
Q ss_pred CcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCc
Q 012059 71 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 150 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 150 (472)
.+..+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ...+.
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-------~~~~~ 90 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-------KLNKI 90 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------TSCSC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------ccCCc
Confidence 34568999999999999999999999999999999999999999999999999999999999987643 12456
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEe
Q 012059 151 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 230 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvD 230 (472)
++||++|+++|+.|+.+.++.+....++.+...+|+.....+...+..+++|+|+||+++.+++......+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 89999999999999999999999888899999999988877777777789999999999999998877788999999999
Q ss_pred ccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHH
Q 012059 231 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 309 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (472)
|||++.+.++...+..++..+ +..+++++|||++..+.......+..+..+..... .....+.+.+.......+...+
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHH
Confidence 999998888888888888777 57899999999999898888888887766654432 3345567777777777777777
Q ss_pred HHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 012059 310 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 389 (472)
Q Consensus 310 ~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 389 (472)
..++... ..+++||||+++..++.+++.|. ..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 250 ~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 250 NTLFSKL--QINQAIIFCNSTNRVELLAKKIT-DLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHS--CCSEEEEECSSHHHHHHHHHHHH-HHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHhhc--CCCcEEEEEecHHHHHHHHHHHH-hcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 7777654 34689999999999999999998 67999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHhc
Q 012059 390 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINS 454 (472)
Q Consensus 390 ~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 454 (472)
+++||+++.|.+...|+||+||+||.|+.|.|++|+++.|...+.++.+.+....+++|.++.+.
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGG
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999988887777777665543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.7e-56 Score=437.09 Aligned_cols=369 Identities=29% Similarity=0.496 Sum_probs=321.6
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
.+|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.. ...+.++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------~~~~~~~l 80 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------VTGQVSVL 80 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-------CTTCCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-------cCCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999887543 13456899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcC-CCEEEeChHHHHHHHHcCCCCCCCeeEEEEec
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 231 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE 231 (472)
|++|+++|+.|+.+.++++.... ++++..++|+.........+..+ ++|+|+||+++..++......+.++++||+||
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 99999999999999999998765 68888999988877766666544 79999999999999988877889999999999
Q ss_pred cchhhhc-CcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCC-CCccceeEEEEEecchhHHHH
Q 012059 232 VDCMLQR-GFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPN-MPNKAVKQLAIWVESNKKKQK 308 (472)
Q Consensus 232 ~h~~~~~-~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 308 (472)
||++.++ ++...+..++... +..+++++|||+++.+......++.++..+...... .....+.+.+.......+...
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 9999874 6777888888777 478999999999998988888888888777665442 334556677777777788888
Q ss_pred HHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 012059 309 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 388 (472)
Q Consensus 309 l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 388 (472)
+..++... ..+++||||+++..++.++..|. ..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 241 l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 241 LFDLLDVL--EFNQVVIFVKSVQRCIALAQLLV-EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHS--CCSEEEEECSCHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCT
T ss_pred HHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcc
Confidence 88888765 45689999999999999999998 6799999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC-ChHHHHHHHHHHHHcCCCCCHHHH
Q 012059 389 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSSGAGIPRELI 452 (472)
Q Consensus 389 ~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l~ 452 (472)
++++||+++.|++...|+||+||+||.|+.|.|++++++. +...+..+.+.+.....++|.++.
T Consensus 318 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 318 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp TEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred cCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 9999999999999999999999999999999999999876 456677787777777777776643
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-55 Score=428.25 Aligned_cols=359 Identities=29% Similarity=0.516 Sum_probs=318.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC-CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCc
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 150 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 150 (472)
...+|+++++++.+.+.|.+.||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+.. ..+.
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--------~~~~ 75 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--------NNGI 75 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------SSSC
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------cCCC
Confidence 3467999999999999999999999999999999999988 799999999999999999999887543 3567
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEe
Q 012059 151 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 230 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvD 230 (472)
++||++|+++|+.|+.+.+..+....++.+...+|+.....+...+. +++|+|+||+++.+.+......+.++++||+|
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 154 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILD 154 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEe
Confidence 89999999999999999999998877888999999988776655554 68999999999999998887788999999999
Q ss_pred ccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHH
Q 012059 231 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 309 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (472)
|||++.++++...+..++..+ +..+++++|||++.........++.++..+..... ..+.+.+.......+...+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeChHHHHHHH
Confidence 999999999999999988887 67899999999999888888888887776654332 2455666666777777777
Q ss_pred HHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 012059 310 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 389 (472)
Q Consensus 310 ~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 389 (472)
..++. ..+.++||||+++..++.+++.|. ..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 231 ~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~ 306 (367)
T 1hv8_A 231 CRLLK---NKEFYGLVFCKTKRDTKELASMLR-DIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVND 306 (367)
T ss_dssp HHHHC---STTCCEEEECSSHHHHHHHHHHHH-HTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSC
T ss_pred HHHHh---cCCCcEEEEECCHHHHHHHHHHHH-hcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCccc
Confidence 77774 456689999999999999999998 67999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 012059 390 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGI 447 (472)
Q Consensus 390 ~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 447 (472)
+++||+++.|.+..+|.||+||+||.|+.|.+++++++.+...+..+.+.++....++
T Consensus 307 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 307 LNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp CSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred CCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999999999999999888888876655443
No 8
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.6e-57 Score=444.81 Aligned_cols=374 Identities=28% Similarity=0.539 Sum_probs=186.4
Q ss_pred CCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCC
Q 012059 69 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 148 (472)
Q Consensus 69 ~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 148 (472)
...+..+|+++++++.+.+.+...||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.. ...
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-------~~~ 88 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------SVK 88 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------TCC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------cCC
Confidence 4556678999999999999999999999999999999999999999999999999999999999987643 234
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 228 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iV 228 (472)
++++||++|+++|+.|+++.+.++....++.+..++|+....+....+. +++|+|+||+++.+.+......+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 6789999999999999999999998888899999999888766555544 689999999999999988877888999999
Q ss_pred EeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchh-HH
Q 012059 229 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KK 306 (472)
Q Consensus 229 vDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 306 (472)
+||||++.++++...+..++..+ +..+++++|||+++.+......++..+..+...........+.+.+....... +.
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 99999999999999999998888 66889999999999988888888888887776655544444555444444333 44
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 386 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 386 (472)
..+..++... ..+++||||+++..++.++..|+ ..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 248 ~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 324 (394)
T 1fuu_A 248 ECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLR-NDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 324 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHH-HcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCC
Confidence 4444444332 34689999999999999999998 67889999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHHHHh
Q 012059 387 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELIN 453 (472)
Q Consensus 387 i~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 453 (472)
+|++++||+++.|.+...|+||+||+||.|++|.|++++++.+...+..+.+++.....++|..+.+
T Consensus 325 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 325 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 9999999999999999999999999999999999999999999999999999888888888776543
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.9e-54 Score=424.50 Aligned_cols=356 Identities=28% Similarity=0.505 Sum_probs=303.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCC
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 149 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 149 (472)
...+|+++++++.+.+.+...||..|+|+|.++++.++.+ +++++.+|||+|||++|+++++..+.. ...+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------~~~~ 75 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-------EDAS 75 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------TCCS
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-------CCCC
Confidence 3468999999999999999999999999999999999987 999999999999999999999987643 2356
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEE
Q 012059 150 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 229 (472)
Q Consensus 150 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVv 229 (472)
+++||++|+++|+.|+++.+++++...++.+...+++..... ...+++|+|+||+++.+.+......+.++++||+
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 789999999999999999999998888888877777654332 1246899999999999999888888999999999
Q ss_pred eccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecch-hHH
Q 012059 230 DEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-KKK 306 (472)
Q Consensus 230 DE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 306 (472)
||||++.+ .++...+..+...+ +..+++++|||+++.+..+...+..++..+...........+.+.+...... .+.
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHH
T ss_pred EChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHH
Confidence 99999988 57778888888777 5689999999999999999999988888777666555556666666666444 344
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVE 386 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 386 (472)
..+..++.. ...+++||||+++..++.++..|+ ..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 232 ~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 232 DVLTELYGL--MTIGSSIIFVATKKTANVLYGKLK-SEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 444444432 245689999999999999999998 67899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCC------CHhHHHHhhcccccCCCcceEEEEEcCCC-hHHHHHHHHHHH
Q 012059 387 LLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILK 441 (472)
Q Consensus 387 i~~~~~VI~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~ 441 (472)
+|++++||++|.|. +...|+||+||+||.|+.|.+++++.+.+ ...+..+.+.+.
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999 99999999999999999999999998754 445555555544
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8.7e-55 Score=429.38 Aligned_cols=367 Identities=28% Similarity=0.490 Sum_probs=311.8
Q ss_pred CCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCC
Q 012059 70 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQ 147 (472)
Q Consensus 70 p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~ 147 (472)
+.+..+|+++++++.+++.+.+.||..|+++|.++++.++++ +++++.+|||+|||++|++|++..+.. ..
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------~~ 93 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------AN 93 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------TS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-------cC
Confidence 355778999999999999999999999999999999999987 999999999999999999999987643 23
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc-CCCCCCCee
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIR 225 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~-~~~~~~~~~ 225 (472)
.++++||++|+++|+.|+++.++++.... ++.+....++...... ...+++|+|+||+++.+++.. ....+.+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 170 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 170 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCc
Confidence 45689999999999999999999998764 4667777776554321 134579999999999999865 455678999
Q ss_pred EEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecch
Q 012059 226 MFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN 303 (472)
Q Consensus 226 ~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 303 (472)
+||+||||++.+ .++...+..+...+ ...+++++|||+++.+..+...++.++..+...........+.+.+......
T Consensus 171 ~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 171 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH
T ss_pred EEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh
Confidence 999999999987 57777888888777 5689999999999999999999999988887776666666677776666553
Q ss_pred -hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012059 304 -KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 382 (472)
Q Consensus 304 -~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 382 (472)
.+...+..++.... .+++||||+++..++.++..|. ..+..+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 251 ~~~~~~l~~~~~~~~--~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 251 DEKFQALCNLYGAIT--IAQAMIFCHTRKTASWLAAELS-KEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHHHS--SSEEEEECSSHHHHHHHHHHHH-HTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred HHHHHHHHHHHhhcC--CCCEEEEeCCHHHHHHHHHHHH-hCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 45566666665433 4589999999999999999998 6799999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEecCC------CCHhHHHHhhcccccCCCcceEEEEEcCCC-hHHHHHHHHHHHHcCCCCCH
Q 012059 383 RGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILKSSGAGIPR 449 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 449 (472)
+|+|+|++++||++|.| .+..+|+||+||+||.|+.|.+++++++.+ ...+..+.+.+.....+++.
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999999999 467899999999999999999999998765 77888888888776666653
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.7e-55 Score=446.47 Aligned_cols=366 Identities=24% Similarity=0.416 Sum_probs=301.8
Q ss_pred cccCcccCC----CCHHHHHHHHHCCCCCCCHHHHHHHhhHh--cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccC
Q 012059 72 PILSFSSCS----LSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ 145 (472)
Q Consensus 72 ~~~~~~~~~----l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~--~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~ 145 (472)
+..+|+++. |++.+++.+..+||..|+|+|.++++.++ .++++++.||||+|||++|++|++..+..... .
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---~ 91 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---D 91 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---S
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc---c
Confidence 344555543 99999999999999999999999999999 78899999999999999999999998876332 1
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHHHHhc----CCCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcC-CC
Q 012059 146 NQKNPLAMVLTPTRELCIQVEEQAKLLGK----GLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKH-DI 219 (472)
Q Consensus 146 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~-~~ 219 (472)
...++++||++||++|+.|+++.+..+.. .....+..++||.....+...+. .+++|+|+||++|.+++... ..
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 23467899999999999999999998853 23467888899988887777764 47999999999999988764 33
Q ss_pred CCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCC----C
Q 012059 220 ELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP----N 287 (472)
Q Consensus 220 ~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~----~ 287 (472)
.+..+++||+||||++.+++|...+..++..+ ...+++++|||+++.+..++..++..+..+..... .
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 57789999999999999999999998888765 26789999999999999999998887665544321 2
Q ss_pred CCccceeEEEEEecch-hHHHHH----HHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc--CCeEEEEcCCCCHHHH
Q 012059 288 MPNKAVKQLAIWVESN-KKKQKL----FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--GMKALSIHGEKPMKER 360 (472)
Q Consensus 288 ~~~~~~~~~~~~~~~~-~~~~~l----~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~~r 360 (472)
.....+.+........ .....+ ...+.. ...+.++||||+++..++.++..|.... ++.+..+||+|++.+|
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKE-RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHH-TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhh-cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 2233445554444432 222222 222222 2345689999999999999999998432 8899999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHH
Q 012059 361 REIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDIL 440 (472)
Q Consensus 361 ~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 440 (472)
..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|+.+.+...+..+.+..
T Consensus 331 ~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 331 TSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877664
Q ss_pred H
Q 012059 441 K 441 (472)
Q Consensus 441 ~ 441 (472)
.
T Consensus 411 ~ 411 (579)
T 3sqw_A 411 N 411 (579)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.2e-54 Score=443.02 Aligned_cols=358 Identities=24% Similarity=0.433 Sum_probs=295.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHh--cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~--~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
+++.+++.+...||..|+|+|.++++.++ .+++++++||||||||++|++|++..+...... ...++++||++||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~lil~Pt 155 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQYMVKAVIVAPT 155 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc---ccCCeeEEEEcCc
Confidence 99999999999999999999999999999 678999999999999999999999998763321 2335689999999
Q ss_pred HHHHHHHHHHHHHHhcC----CCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcC-CCCCCCeeEEEEecc
Q 012059 159 RELCIQVEEQAKLLGKG----LPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEV 232 (472)
Q Consensus 159 ~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~-~~~~~~~~~iVvDE~ 232 (472)
++|+.|+++.++.+... ....+..++||.....+...+. .+++|+|+||++|.+++.+. ...+..+++||+|||
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCH
Confidence 99999999999987432 2366888899988777776663 47999999999999888764 235778999999999
Q ss_pred chhhhcCcHHHHHHHHHhC--------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCC----CCCccceeEEEEEe
Q 012059 233 DCMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP----NMPNKAVKQLAIWV 300 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~ 300 (472)
|++.+++|...+..++..+ +..|++++|||+++.+..++..++..+..+..... ......+.+.+...
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 9999999999988887765 26789999999999999999988887665544221 22233444544444
Q ss_pred cch-hHHHHHHHHHHh---cCCCCCCEEEEECCchhHHHHHHHHhhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 012059 301 ESN-KKKQKLFDILMS---KQHFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPV 374 (472)
Q Consensus 301 ~~~-~~~~~l~~~l~~---~~~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 374 (472)
... .+...++..+.. ....+.++||||+++..++.++..|... .++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 332 222222222221 2245668999999999999999999843 2889999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHH
Q 012059 375 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 441 (472)
Q Consensus 375 LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 441 (472)
||||+++++|||+|++++||+++.|.+...|+||+||+||.|+.|.|++|+.+.+...++.+.+...
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999888888776644
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9e-56 Score=444.21 Aligned_cols=374 Identities=28% Similarity=0.489 Sum_probs=175.7
Q ss_pred eeeCCCCCCc---ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 63 NVKGDAVPAP---ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 63 ~~~~~~~p~~---~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.+.+...+.| ..+|++++|++.+++.+..+||..|+++|.++++.++.+ +++++.||||||||++|++|++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~ 157 (479)
T 3fmp_B 78 EVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (479)
T ss_dssp EEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCC
T ss_pred eecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHh
Confidence 3444444444 568999999999999999999999999999999999986 99999999999999999999997664
Q ss_pred hhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc
Q 012059 138 NIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK 216 (472)
Q Consensus 138 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~ 216 (472)
. ...++++||++|+++|+.|+++.++.+.... ++.+....++...... ...+++|+|+||++|.+++.+
T Consensus 158 ~-------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~ 227 (479)
T 3fmp_B 158 P-------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSK 227 (479)
T ss_dssp T-------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTT
T ss_pred h-------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHh
Confidence 3 2345689999999999999999999988754 4666666666543321 123578999999999999865
Q ss_pred -CCCCCCCeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccce
Q 012059 217 -HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAV 293 (472)
Q Consensus 217 -~~~~~~~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 293 (472)
....+.++++||+||||++.+ .++...+..+...+ ...+++++|||++..+..++..++.++..+...........+
T Consensus 228 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 307 (479)
T 3fmp_B 228 LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 307 (479)
T ss_dssp SCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------
T ss_pred cCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCc
Confidence 455678999999999999987 56777777777776 568999999999999999999999999888887766555666
Q ss_pred eEEEEEecc-hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 012059 294 KQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 372 (472)
Q Consensus 294 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 372 (472)
.+.+..+.. ..+...+..++... ..+++||||+++..++.++..|. ..+..+..+||++++.+|..+++.|++|+.
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~-~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 384 (479)
T 3fmp_B 308 KQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELS-KEGHQVALLSGEMMVEQRAAVIERFREGKE 384 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHH-hCCccEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 666555544 33444555554332 34689999999999999999998 678999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCcEEEEecCCC------CHhHHHHhhcccccCCCcceEEEEEcCCC-hHHHHHHHHHHHHcCC
Q 012059 373 PVIVATGILGRGVELLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEEN-KNLFQELVDILKSSGA 445 (472)
Q Consensus 373 ~vLvaT~~~~~Gidi~~~~~VI~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~ 445 (472)
+|||||+++++|+|+|++++||+||+|. +...|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+.....
T Consensus 385 ~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~ 464 (479)
T 3fmp_B 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIE 464 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCce
Confidence 9999999999999999999999999994 66899999999999999999999998765 6777777777776666
Q ss_pred CCCH
Q 012059 446 GIPR 449 (472)
Q Consensus 446 ~~~~ 449 (472)
.++.
T Consensus 465 ~l~~ 468 (479)
T 3fmp_B 465 RLDT 468 (479)
T ss_dssp ----
T ss_pred ECCC
Confidence 5543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-52 Score=402.24 Aligned_cols=334 Identities=30% Similarity=0.500 Sum_probs=285.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 160 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~ 160 (472)
|++.+.+.+..+||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------------cCCEEEEeCCHH
Confidence 5789999999999999999999999999999999999999999999999998753 456999999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCc
Q 012059 161 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF 240 (472)
Q Consensus 161 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~ 240 (472)
|+.|+++.+++++...+..+..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||++.++++
T Consensus 68 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcccc
Confidence 9999999999998888889999999888776665554 489999999999999888777788999999999999999999
Q ss_pred HHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCC
Q 012059 241 RDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHF 319 (472)
Q Consensus 241 ~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 319 (472)
...+..++... ...+++++|||+++........++.++..+... .....+.+.+.......+ .....+.. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~ 219 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQALRE--NK 219 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHHHHT--CC
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHHHHh--CC
Confidence 99999998888 456778899999999888888888877666432 223344444444443322 22344433 45
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP 399 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p 399 (472)
++++||||+++..++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC
Confidence 5789999999999999998886 57889999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHH
Q 012059 400 NSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 441 (472)
Q Consensus 400 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 441 (472)
.|...|.||+||+||.|+.|.+++|+. .+....+.+.+.++
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999999 88778877776654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.1e-51 Score=417.27 Aligned_cols=342 Identities=19% Similarity=0.277 Sum_probs=272.2
Q ss_pred ccCcc--cCCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCC
Q 012059 73 ILSFS--SCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 149 (472)
Q Consensus 73 ~~~~~--~~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 149 (472)
...|. ++++++.+.+.|+. +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++. ..
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-------------~~ 84 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-------------SD 84 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------------SS
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------------cC
Confidence 34454 47889999999998 6999999999999999999999999999999999999999974 24
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHH---H---hcCCCEEEeChHHHH------HHHHcC
Q 012059 150 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---I---QQGVELIVGTPGRLI------DLLMKH 217 (472)
Q Consensus 150 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~---~~~~~I~i~Tp~~l~------~~~~~~ 217 (472)
+++|||+|+++|+.|+.+.+..+ ++.+..+.++....+.... + ....+|+|+||++|. +.+..
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~- 159 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK- 159 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-
Confidence 58999999999999999999987 4677888887766544322 2 346899999999874 22222
Q ss_pred CCCCCCeeEEEEeccchhhhcC--cHHHHH---HHHHhCCCCceEeecccccHHHHHHHhhhcCC--cEEEEeCCCCCCc
Q 012059 218 DIELDDIRMFVLDEVDCMLQRG--FRDQVM---QIFRAISLPQILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPN 290 (472)
Q Consensus 218 ~~~~~~~~~iVvDE~h~~~~~~--~~~~~~---~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~ 290 (472)
...+.++++|||||||++.+++ |++.+. .+...++..+++++|||++..+......++.. +..+.. ... .
T Consensus 160 ~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~--r 236 (591)
T 2v1x_A 160 AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFN--R 236 (591)
T ss_dssp HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCC--C
T ss_pred hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCC--C
Confidence 2346789999999999999887 655544 34455688999999999998877666555443 232222 111 1
Q ss_pred cceeEEEEEecc--hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHh
Q 012059 291 KAVKQLAIWVES--NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL 368 (472)
Q Consensus 291 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~ 368 (472)
.++...+..... ......+..++... ..+.++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|+
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~-~~g~~~~~~h~~l~~~~R~~~~~~F~ 314 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQ-NLGIHAGAYHANLEPEDKTTVHRKWS 314 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHH-HCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 223222222211 23445566665432 245689999999999999999998 77999999999999999999999999
Q ss_pred cCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHH
Q 012059 369 VGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 369 ~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 437 (472)
+|+.+|||||+++++|||+|++++||+|++|.|++.|+||+||+||.|.+|.|++|+++.|...+..++
T Consensus 315 ~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 315 ANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred cCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988766555443
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-53 Score=426.31 Aligned_cols=388 Identities=24% Similarity=0.412 Sum_probs=259.2
Q ss_pred CHHHHHHHHHhcCcee-eCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC--CcEEEEccCCCCcc
Q 012059 49 TIGQTDSLRKRLEINV-KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKT 125 (472)
Q Consensus 49 ~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT 125 (472)
+.++...+.+..++.. .....|.+...+...++++.+.+.+.+.||..|+++|.++++.++++ +++++.+|||||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT 172 (508)
T 3fho_A 93 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKT 172 (508)
T ss_dssp ----------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHH
Confidence 3444455544444332 22333555566777789999999999999999999999999999987 99999999999999
Q ss_pred hhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEe
Q 012059 126 ASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVG 205 (472)
Q Consensus 126 ~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~ 205 (472)
++|+++++..+.. ...++++||++|+++|+.|+.+.++.++...++.+....++..... ...+++|+|+
T Consensus 173 ~~~~~~il~~l~~-------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~ 241 (508)
T 3fho_A 173 AAFALTMLSRVDA-------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIG 241 (508)
T ss_dssp HHHHHHHHHHSCT-------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEE
T ss_pred HHHHHHHHHHHHh-------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEE
Confidence 9999999987644 2346689999999999999999999998777766666655543322 2346899999
Q ss_pred ChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEe
Q 012059 206 TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSV 283 (472)
Q Consensus 206 Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 283 (472)
||+++.+.+......+.++++||+||||++.+ .++...+..++..+ +..+++++|||+++.+..+...+..++..+..
T Consensus 242 T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~ 321 (508)
T 3fho_A 242 TPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRL 321 (508)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECC
T ss_pred CHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEe
Confidence 99999999988888889999999999999987 57888888888888 57899999999999999999999988887776
Q ss_pred CCCCCCccceeEEEEEecc-hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHH
Q 012059 284 GKPNMPNKAVKQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 362 (472)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~ 362 (472)
.........+.+.+..... ..+...+..++... ..+++||||+++..++.++..|. ..+..+..+||+++..+|..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~-~~~~~v~~~hg~~~~~~R~~ 398 (508)
T 3fho_A 322 KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMT-ADGHTVACLTGNLEGAQRDA 398 (508)
T ss_dssp CCCC----CCCCEEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHT-TTTCCCCEEC-----CTTGG
T ss_pred ccccCCcccceEEEEECCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHH
Confidence 6655555555555555533 34455555555332 45689999999999999999998 67899999999999999999
Q ss_pred HHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCC------CCHhHHHHhhcccccCCCcceEEEEEcC-CChHHHHH
Q 012059 363 IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNE-ENKNLFQE 435 (472)
Q Consensus 363 ~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~ 435 (472)
+++.|++|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++|+.+ .+...+..
T Consensus 399 il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~ 478 (508)
T 3fho_A 399 IMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNA 478 (508)
T ss_dssp GTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHH
T ss_pred HHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHH
Confidence 9999999999999999999999999999999999999 7899999999999999999999999984 56677888
Q ss_pred HHHHHHHcCCCCCHH
Q 012059 436 LVDILKSSGAGIPRE 450 (472)
Q Consensus 436 l~~~l~~~~~~~~~~ 450 (472)
+.+.+......+|..
T Consensus 479 i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 479 IQEYFQRPITRVPTD 493 (508)
T ss_dssp HHHHSCCCCC-----
T ss_pred HHHHHCCCcccCCCc
Confidence 888877777777643
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.3e-51 Score=410.49 Aligned_cols=340 Identities=21% Similarity=0.323 Sum_probs=274.4
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 74 LSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
.+|+++++++.+.+.|++ +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. .+.+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------------~g~~ 68 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------------NGLT 68 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-------------SSEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-------------CCCE
Confidence 468999999999999998 79999999999999999999999999999999999999998742 3569
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HH-hcCCCEEEeChHHHHHHHHcCCCCCCCeeEEE
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RI-QQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 228 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~-~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iV 228 (472)
||++|+++|+.|+.+.+..+ ++.+..+.++....+... .+ ....+|+++||+++........+...++++||
T Consensus 69 lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 69 VVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred EEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 99999999999999998875 467777777766544322 22 34589999999998532211222346899999
Q ss_pred EeccchhhhcC--cHHHHH---HHHHhCCCCceEeecccccHHHHH-HHhhhc-CCcEEEEeCCCCCCccceeEEEEEec
Q 012059 229 LDEVDCMLQRG--FRDQVM---QIFRAISLPQILMYSATISQEVEK-MSSSIS-KDIVVVSVGKPNMPNKAVKQLAIWVE 301 (472)
Q Consensus 229 vDE~h~~~~~~--~~~~~~---~i~~~~~~~~~i~~SAT~~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 301 (472)
+||||++.+++ |++.+. .+...++..+++++|||+++.+.. +...+. .++..+. .... ..++. +....
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~--r~~l~--~~v~~ 219 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD--RPNIR--YMLME 219 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCC--CTTEE--EEEEE
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCC--CCceE--EEEEe
Confidence 99999999887 554443 455666889999999999987654 444443 3343332 2222 12222 22334
Q ss_pred chhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 012059 302 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 381 (472)
Q Consensus 302 ~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 381 (472)
...+...+..++... .+.++||||+++..++.++..|. ..++.+..+||+++.++|..+++.|++|+.+|||||+++
T Consensus 220 ~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~ 296 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQ-SKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296 (523)
T ss_dssp CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS
T ss_pred CCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHH-HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 455667788887654 45689999999999999999998 679999999999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHH
Q 012059 382 GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 382 ~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 438 (472)
++|||+|++++||+++.|.|.+.|.||+||+||.|.+|.|++|+++.|....+.+++
T Consensus 297 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888766555543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-49 Score=392.05 Aligned_cols=325 Identities=19% Similarity=0.271 Sum_probs=260.9
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHH
Q 012059 84 KLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 162 (472)
Q Consensus 84 ~i~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~ 162 (472)
.+.+.+++ .|| .|+|+|.++++.+++|+++++.+|||||||++|+++++..+ ..++++||++||++|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~----------~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------RKGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH----------TTTCCEEEEESSHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh----------cCCCEEEEEECCHHHH
Confidence 34445554 467 89999999999999999999999999999999999887754 2467899999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCcch---HHHHHHHhcC-CCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-
Q 012059 163 IQVEEQAKLLGKGLPFKTALVVGGDAM---ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ- 237 (472)
Q Consensus 163 ~q~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~-~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~- 237 (472)
.|+++.++.++. .++++..++|+... ..+...+..+ ++|+|+||+++.+++.. ..+.++++||+||||++.+
T Consensus 78 ~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 78 KQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhc
Confidence 999999999987 78899999999887 5555666666 99999999999887764 4567899999999997654
Q ss_pred ----------cCcHHH-HHHHHHhC------------CCCceEeeccc-ccHHHH-HHHhhhcCCcEEEEeCCCCCCccc
Q 012059 238 ----------RGFRDQ-VMQIFRAI------------SLPQILMYSAT-ISQEVE-KMSSSISKDIVVVSVGKPNMPNKA 292 (472)
Q Consensus 238 ----------~~~~~~-~~~i~~~~------------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 292 (472)
.+|... +..++..+ +..+++++||| .+..+. .+...+.. +...........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 566666 67777665 67899999999 554433 22222222 222223333444
Q ss_pred eeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEE-EEcCCCCHHHHHHHHHHHhcCC
Q 012059 293 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-SIHGEKPMKERREIMRSFLVGE 371 (472)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~ 371 (472)
+.+.+... .+...+..++... ++++||||+++..++.++..|. ..++.+. .+||+ +|. ++.|++|+
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~h~~----~r~--~~~f~~g~ 297 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLK-RFKFNVGETWSEF----EKN--FEDFKVGK 297 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHH-HTTCCEEESSSCH----HHH--HHHHHTTS
T ss_pred chheeecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHH-HcCCceehhhcCc----chH--HHHHhCCC
Confidence 55555433 3455666666652 3689999999999999999998 6789998 88984 444 99999999
Q ss_pred CcEEEE----eccccccCCCCC-CcEEEEecCC--CCHhHHHHhhcccccCC----CcceEEEEEcCCChHHHHHHHHHH
Q 012059 372 VPVIVA----TGILGRGVELLG-VRQVIIFDMP--NSIKEYVHQIGRASQMG----DEGTAIVFVNEENKNLFQELVDIL 440 (472)
Q Consensus 372 ~~vLva----T~~~~~Gidi~~-~~~VI~~~~p--~s~~~~~Qr~GR~~R~g----~~g~~~~~~~~~~~~~~~~l~~~l 440 (472)
++|||| |+++++|+|+|+ +++||+||.| .+...|+||+||+||.| ..|.+++|+ .+...+..+.+.+
T Consensus 298 ~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 298 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRL 375 (414)
T ss_dssp CSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHH
T ss_pred CeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHh
Confidence 999999 999999999999 9999999999 99999999999999988 479999999 6777888888887
Q ss_pred H
Q 012059 441 K 441 (472)
Q Consensus 441 ~ 441 (472)
.
T Consensus 376 ~ 376 (414)
T 3oiy_A 376 L 376 (414)
T ss_dssp H
T ss_pred c
Confidence 7
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-47 Score=402.51 Aligned_cols=336 Identities=24% Similarity=0.256 Sum_probs=266.8
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCc
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 150 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 150 (472)
...+|+++++++.+.+.+...||..|+++|.++++. +.++++++++||||||||++|.++++..+.. .+.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~ 76 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---------NGG 76 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SCS
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------CCC
Confidence 346799999999999999999999999999999999 7799999999999999999999999987653 256
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEe
Q 012059 151 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 230 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvD 230 (472)
+++|++|+++|+.|+++.++.+. ..++++...+|+....+. ...+++|+|+||++|..++......+.++++||+|
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 89999999999999999996554 347788888887654432 12368999999999999988876668899999999
Q ss_pred ccchhhhcCcHHHHHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEE------------EE
Q 012059 231 EVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQL------------AI 298 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------~~ 298 (472)
|+|++.+..+...+..++.+++..+++++|||+++ ...++.++....+ .......+ +... ..
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~~~~r~~~---l~~~~~~~~~~~~~~~~~ 226 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAKRRNLLALSATISN-YKQIAKWLGAEPV--ATNWRPVP---LIEGVIYPERKKKEYNVI 226 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT-HHHHHHHHTCEEE--ECCCCSSC---EEEEEEEECSSTTEEEEE
T ss_pred chhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC-HHHHHHHhCCCcc--CCCCCCCC---ceEEEEecCCcccceeee
Confidence 99999887888888888888889999999999986 4666666643221 11111111 1111 11
Q ss_pred Eec--------chhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcC-------------------------
Q 012059 299 WVE--------SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG------------------------- 345 (472)
Q Consensus 299 ~~~--------~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~------------------------- 345 (472)
+.. .......+...+ ..++++||||+++..++.++..|.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 227 FKDNTTKKVHGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp ETTSCEEEEESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred cCcchhhhcccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 111 122223333333 3567999999999999999999874321
Q ss_pred ----------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ec-------CCCCHhH
Q 012059 346 ----------MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-------MPNSIKE 404 (472)
Q Consensus 346 ----------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~-------~p~s~~~ 404 (472)
..+..+||+++.++|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.|..+
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~ 382 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIME 382 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHH
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHH
Confidence 35889999999999999999999999999999999999999999999999 98 8999999
Q ss_pred HHHhhcccccCCC--cceEEEEEcCCCh
Q 012059 405 YVHQIGRASQMGD--EGTAIVFVNEENK 430 (472)
Q Consensus 405 ~~Qr~GR~~R~g~--~g~~~~~~~~~~~ 430 (472)
|.||+|||||.|. .|.|++++++.+.
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 9999999999984 6999999987763
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.6e-48 Score=406.73 Aligned_cols=332 Identities=19% Similarity=0.276 Sum_probs=267.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
+|+++++++.+.+.+...||..|+++|.++++. +.+++++++++|||||||++|.++++..+.. .+.+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---------QGGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------HCSEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCCEEE
Confidence 588999999999999999999999999999998 7899999999999999999999999988764 157899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 233 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h 233 (472)
|++|+++|+.|+++.++++.. .++++..++|+...... ...+++|+|+||++|..++......+.++++||+||+|
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 999999999999999976644 47888888886554331 12468999999999999988876668899999999999
Q ss_pred hhhhcCcHHHHHHHHHhCC-CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEE------EEec-----
Q 012059 234 CMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLA------IWVE----- 301 (472)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~----- 301 (472)
++.++.+...+..++..+. ..+++++|||+++ ...+..++....+ ....... .+...+ .+..
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~~~~rp~---~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAELI--VSDWRPV---KLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEEE--ECCCCSS---EEEEEEEETTEEEETTSCEEE
T ss_pred ccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCccc--CCCCCCC---cceEEEEeCCeeeccccchhh
Confidence 9998888888888888774 7899999999986 4566666543221 1111111 111111 1111
Q ss_pred chhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc--------------------------------CCeEE
Q 012059 302 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--------------------------------GMKAL 349 (472)
Q Consensus 302 ~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~--------------------------------~~~~~ 349 (472)
.......+.+.+ ..++++||||+++..++.++..|.+.. ...+.
T Consensus 223 ~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 223 FSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp CSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 122233333333 235789999999999999998887321 12488
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ec----CCCCHhHHHHhhcccccCC--Ccc
Q 012059 350 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD----MPNSIKEYVHQIGRASQMG--DEG 419 (472)
Q Consensus 350 ~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~----~p~s~~~~~Qr~GR~~R~g--~~g 419 (472)
.+||++++++|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| ..|
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998 76 5899999999999999998 469
Q ss_pred eEEEEEcCCC
Q 012059 420 TAIVFVNEEN 429 (472)
Q Consensus 420 ~~~~~~~~~~ 429 (472)
.|++++++.+
T Consensus 379 ~~~~l~~~~~ 388 (720)
T 2zj8_A 379 EGIIVSTSDD 388 (720)
T ss_dssp EEEEECSSSC
T ss_pred eEEEEecCcc
Confidence 9999999887
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.8e-47 Score=389.37 Aligned_cols=330 Identities=15% Similarity=0.230 Sum_probs=203.7
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.-.|+|+|.++++.++.++++++.+|||+|||++|++|++..+.... ...++++||++|+++|+.||.+.+++++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 44899999999999999999999999999999999999998876521 1236789999999999999999999998
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcCcHHHHH-HHHHh-
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQVM-QIFRA- 250 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~-~~~~~~~iVvDE~h~~~~~~~~~~~~-~i~~~- 250 (472)
...++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+++....+. ..+..
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 8778899999998876666666667799999999999999988776 78899999999999998877544332 22222
Q ss_pred ----CCCCceEeecccccH-----------HHHHHHhhhcCCcEEEEeCCC-----CCCccceeEEEEEe----------
Q 012059 251 ----ISLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGKP-----NMPNKAVKQLAIWV---------- 300 (472)
Q Consensus 251 ----~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~---------- 300 (472)
.+.++++++|||++. .+..+...+....+....... ..... ........
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKP-EIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCC-CEEEEECCCCSCCHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCC-ceEEEEcCCCcCChHHHH
Confidence 255899999999842 222222222211111100000 00000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 012059 301 -------------------------------------------------------------------------------- 300 (472)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (472)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred --------------------------------------------------cchhHHHHHHHHHHhcC--CCCCCEEEEEC
Q 012059 301 --------------------------------------------------ESNKKKQKLFDILMSKQ--HFTPPAVVYVG 328 (472)
Q Consensus 301 --------------------------------------------------~~~~~~~~l~~~l~~~~--~~~~~~lIf~~ 328 (472)
....+...+..++.... ..+.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 01234444555554432 45679999999
Q ss_pred CchhHHHHHHHHhhh-----------cCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCcEEEEe
Q 012059 329 SRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIF 396 (472)
Q Consensus 329 ~~~~~~~l~~~L~~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~ 396 (472)
++..++.++..|... .|.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999743 25556677889999999999999999 999999999999999999999999999
Q ss_pred cCCCCHhHHHHhhcccccCCCcceEEEEEcCCChH
Q 012059 397 DMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKN 431 (472)
Q Consensus 397 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 431 (472)
|+|+|+..|+||+|| ||. +.|.+++|+.+.+..
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999 998 789999999987643
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-47 Score=400.73 Aligned_cols=332 Identities=20% Similarity=0.263 Sum_probs=263.1
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 75 SFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 75 ~~~~~~--l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
+|++++ +++.+.+.+...||..|+++|.++++.+.+++++++++|||||||++|.++++..+.. +.++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----------TCCE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCcE
Confidence 577787 9999999999999999999999999999999999999999999999999999987643 4679
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
+|++|+++|+.|+++.++.+. ..++++...+|+....+. ...+++|+|+||++|..++.+....+.++++||+||+
T Consensus 72 l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred EEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 999999999999999996553 457888888887654431 1236899999999999999887666889999999999
Q ss_pred chhhhcCcHHHHHHHHHhC----CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEE------EEecc
Q 012059 233 DCMLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLA------IWVES 302 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~ 302 (472)
|++.++++...+..++..+ +..+++++|||+++ ...++.++....+ .......+ +...+ .+...
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~~~~r~~~---l~~~~~~~~~~~~~~~ 221 (702)
T 2p6r_A 148 HLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDADYY--VSDWRPVP---LVEGVLCEGTLELFDG 221 (702)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTCEEE--ECCCCSSC---EEEEEECSSEEEEEET
T ss_pred eecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCCCcc--cCCCCCcc---ceEEEeeCCeeeccCc
Confidence 9999878787777776665 67999999999986 5667666643322 11111111 11111 11111
Q ss_pred h-------hHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc-----------------------------CC
Q 012059 303 N-------KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-----------------------------GM 346 (472)
Q Consensus 303 ~-------~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~-----------------------------~~ 346 (472)
. .....+.+.+ ..++++||||+++..++.++..|.... +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 222 AFSTSRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TEEEEEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred chhhhhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 1 1333343433 245789999999999999998887321 23
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ec---CCCCHhHHHHhhcccccCCC--
Q 012059 347 KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD---MPNSIKEYVHQIGRASQMGD-- 417 (472)
Q Consensus 347 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~---~p~s~~~~~Qr~GR~~R~g~-- 417 (472)
.+..+||++++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.|.
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 5778999999999999999999999999999999999999999999998 66 78899999999999999984
Q ss_pred cceEEEEEcCCCh
Q 012059 418 EGTAIVFVNEENK 430 (472)
Q Consensus 418 ~g~~~~~~~~~~~ 430 (472)
.|.|++++++.+.
T Consensus 378 ~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 378 RGEAIIIVGKRDR 390 (702)
T ss_dssp CEEEEEECCGGGH
T ss_pred CceEEEEecCccH
Confidence 6999999988763
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.7e-48 Score=403.65 Aligned_cols=343 Identities=16% Similarity=0.210 Sum_probs=222.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 86 LQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 86 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
.+.+..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+.... .+.++++||++||++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----TTCCCCEEEECSSHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----cCCCCeEEEEECCHHHHHHH
Confidence 3456778999999999999999999999999999999999999999998776521 12346899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcCcHHHH
Q 012059 166 EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQV 244 (472)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~-~~~~~~~iVvDE~h~~~~~~~~~~~ 244 (472)
.+.+++++...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.+......+
T Consensus 78 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 78 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 999999988778999999998766555556667899999999999999988766 6889999999999998765533222
Q ss_pred H-HHHHh------CCCCceEeeccccc--------HHHHHHHhhh---------------------cCCcEEEEeCCCCC
Q 012059 245 M-QIFRA------ISLPQILMYSATIS--------QEVEKMSSSI---------------------SKDIVVVSVGKPNM 288 (472)
Q Consensus 245 ~-~i~~~------~~~~~~i~~SAT~~--------~~~~~~~~~~---------------------~~~~~~i~~~~~~~ 288 (472)
. ..+.. -+.++++++|||+. +.+..+.... ...+..........
T Consensus 158 ~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 158 MFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 2 22222 16689999999986 1122221111 11111100000000
Q ss_pred Cc------------------------------------------------------------------------------
Q 012059 289 PN------------------------------------------------------------------------------ 290 (472)
Q Consensus 289 ~~------------------------------------------------------------------------------ 290 (472)
..
T Consensus 238 ~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 238 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 317 (696)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH
Confidence 00
Q ss_pred ---------------------------------cceeEEEEE----------------ecchhHHHHHHHHHHhc--CCC
Q 012059 291 ---------------------------------KAVKQLAIW----------------VESNKKKQKLFDILMSK--QHF 319 (472)
Q Consensus 291 ---------------------------------~~~~~~~~~----------------~~~~~~~~~l~~~l~~~--~~~ 319 (472)
..+.+.+.. .....+...+..++... ...
T Consensus 318 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 397 (696)
T 2ykg_A 318 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 397 (696)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCC
Confidence 000000000 01234555666666554 234
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhcC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTTG----MKALSI--------HGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVE 386 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gid 386 (472)
++++||||+++..++.++..|. ..+ +.+..+ ||+|++++|.++++.|++ |+++|||||+++++|||
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiD 476 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 476 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHH-HCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC--
T ss_pred CCcEEEEeCcHHHHHHHHHHHH-hCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCc
Confidence 5689999999999999999998 455 777777 569999999999999998 99999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHH
Q 012059 387 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQEL 436 (472)
Q Consensus 387 i~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 436 (472)
+|++++||+||+|+++..|+||+|| ||. +.|.++++++..+......+
T Consensus 477 ip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 477 IAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp -CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999999 998 78999999998776444433
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.1e-46 Score=379.17 Aligned_cols=358 Identities=19% Similarity=0.242 Sum_probs=271.7
Q ss_pred ccccCCCHHHHHHHHHhcCcee-eCCCCCCcccCcccCCCCHHHHHHH--------HHCCCCCCCHHHHHHHhhHhcCCc
Q 012059 43 SGFQSLTIGQTDSLRKRLEINV-KGDAVPAPILSFSSCSLSQKLLQNI--------EAAGYDMPTPVQMQAIPSALSGKS 113 (472)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~i~~~l--------~~~g~~~~~~~Q~~~i~~~~~~~~ 113 (472)
+.+..++.+++.....++...+ .|.. |++.+.+.+ +..|| .|+++|..++|.+++|+
T Consensus 34 ~~~~~lsd~el~~~t~~~~~~~~~g~~------------ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~- 99 (844)
T 1tf5_A 34 GDYENLSDDALKHKTIEFKERLEKGAT------------TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN- 99 (844)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS-
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC-
Confidence 3478899999977766654433 2221 222233332 25799 99999999999999998
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV 193 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (472)
+..++||+|||++|.+|++...+. ++.++||+||++||.|.++++..++..+++++.+++||.+...
T Consensus 100 -Iaea~TGeGKTlaf~LP~~l~aL~----------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~-- 166 (844)
T 1tf5_A 100 -IAEMKTGEGKTLTSTLPVYLNALT----------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDE-- 166 (844)
T ss_dssp -EEECCTTSCHHHHHHHHHHHHHTT----------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHH--
T ss_pred -EEEccCCcHHHHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHH--
Confidence 999999999999999999854432 4579999999999999999999999999999999999987544
Q ss_pred HHHhcCCCEEEeChHHH-HHHHHcC------CCCCCCeeEEEEeccchhh-hcC---------------cHHHHHHHHHh
Q 012059 194 YRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCML-QRG---------------FRDQVMQIFRA 250 (472)
Q Consensus 194 ~~~~~~~~I~i~Tp~~l-~~~~~~~------~~~~~~~~~iVvDE~h~~~-~~~---------------~~~~~~~i~~~ 250 (472)
+....+++|+|+||++| .+++..+ ...+..+.++|+||||+|+ +++ |...+..++..
T Consensus 167 r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~ 246 (844)
T 1tf5_A 167 KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRT 246 (844)
T ss_dssp HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTT
T ss_pred HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHh
Confidence 33345699999999999 6766543 3457889999999999998 653 67888889888
Q ss_pred CC----------CCceE-----------------eecccccH---HHHHH--HhhhcC---CcEE-----EEeCCC----
Q 012059 251 IS----------LPQIL-----------------MYSATISQ---EVEKM--SSSISK---DIVV-----VSVGKP---- 286 (472)
Q Consensus 251 ~~----------~~~~i-----------------~~SAT~~~---~~~~~--~~~~~~---~~~~-----i~~~~~---- 286 (472)
++ ..|++ ++|||.+. .+... +..++. ++++ +.+...
T Consensus 247 l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~ 326 (844)
T 1tf5_A 247 LKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRL 326 (844)
T ss_dssp CCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCB
T ss_pred CcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccc
Confidence 85 46666 89999874 33322 222221 1221 000000
Q ss_pred -----------------------------------------------------------------------CCCcccee-
Q 012059 287 -----------------------------------------------------------------------NMPNKAVK- 294 (472)
Q Consensus 287 -----------------------------------------------------------------------~~~~~~~~- 294 (472)
..+.....
T Consensus 327 m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~ 406 (844)
T 1tf5_A 327 MKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDR 406 (844)
T ss_dssp CTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEEC
T ss_pred cCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccC
Confidence 00000000
Q ss_pred EEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 012059 295 QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPV 374 (472)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 374 (472)
....+.....|...+...+......+.++||||+|+..++.++..|. ..|+.+..+||++.+.+|..+.+.|+.| .|
T Consensus 407 ~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~-~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~V 483 (844)
T 1tf5_A 407 PDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLK-NKGIPHQVLNAKNHEREAQIIEEAGQKG--AV 483 (844)
T ss_dssp CCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHH-TTTCCCEEECSSCHHHHHHHHTTTTSTT--CE
T ss_pred CcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCCEEEeeCCccHHHHHHHHHcCCCC--eE
Confidence 11233455667777887776543445689999999999999999998 7899999999999888887666666655 69
Q ss_pred EEEeccccccCCCC--------CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 375 IVATGILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 375 LvaT~~~~~Gidi~--------~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
+|||++++||+||+ +..+||+|+.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 484 lIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 484 TIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 99999999999999 788999999999999999999999999999999999998774
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-46 Score=385.57 Aligned_cols=334 Identities=16% Similarity=0.238 Sum_probs=230.9
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|+|+|.++++.++.|+++++.+|||+|||++|++|++..+.... ...++++||++||++|+.||.+.+.+++..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999998876521 123678999999999999999999999988
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcCcHHH-HHHHHHhC--
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQ-VMQIFRAI-- 251 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~-~~~~~~~iVvDE~h~~~~~~~~~~-~~~i~~~~-- 251 (472)
.++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+.+.... +...+...
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 88999999999877666666667799999999999999988766 688899999999999987753322 22333332
Q ss_pred ----CCCceEeecccccH-----------HHHHHHhhhcCCcEEEEeCC-----CCCCccceeEEEEE------------
Q 012059 252 ----SLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGK-----PNMPNKAVKQLAIW------------ 299 (472)
Q Consensus 252 ----~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~------------ 299 (472)
+.++++++|||++. .+..+...+....+...... ..............
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 55789999999843 22222222221111110000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 012059 300 -------------------------------------------------------------------------------- 299 (472)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (472)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred ------------------------------------------------ecchhHHHHHHHHHHhcC--CCCCCEEEEECC
Q 012059 300 ------------------------------------------------VESNKKKQKLFDILMSKQ--HFTPPAVVYVGS 329 (472)
Q Consensus 300 ------------------------------------------------~~~~~~~~~l~~~l~~~~--~~~~~~lIf~~~ 329 (472)
.....+...+..++.... ....++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 001234445555554421 235799999999
Q ss_pred chhHHHHHHHHhhhc-----------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCcEEEEec
Q 012059 330 RLGADLLSNAISVTT-----------GMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIFD 397 (472)
Q Consensus 330 ~~~~~~l~~~L~~~~-----------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~~ 397 (472)
+..++.++..|.... |.....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998431 3445566779999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHH
Q 012059 398 MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQEL 436 (472)
Q Consensus 398 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 436 (472)
+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 998 78999999998876544443
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.3e-46 Score=393.91 Aligned_cols=333 Identities=16% Similarity=0.247 Sum_probs=210.7
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.+|+..|+|+|.++++.++.|+++++++|||+|||++|++|++..+.... ...++++||++|+++|+.|+.+.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999998876521 1236789999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcCcHHHHH-HHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQVM-QIF 248 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~-~~~~~~~iVvDE~h~~~~~~~~~~~~-~i~ 248 (472)
+++...++++..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++...+....+. ..+
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred HhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 9988778899999999877766667778899999999999999987766 68889999999999998765433332 333
Q ss_pred Hh-----CCCCceEeeccccc-----------HHHHHHHhhhcCCcEEEEeCCC-----CCCccceeEEE-E--------
Q 012059 249 RA-----ISLPQILMYSATIS-----------QEVEKMSSSISKDIVVVSVGKP-----NMPNKAVKQLA-I-------- 298 (472)
Q Consensus 249 ~~-----~~~~~~i~~SAT~~-----------~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~-~-------- 298 (472)
.. .+.++++++|||+. +.+..+...+....+....... ........... .
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 22 35588999999984 2233333222211111100000 00000000000 0
Q ss_pred --------------------------------------Ee----------------------------------------
Q 012059 299 --------------------------------------WV---------------------------------------- 300 (472)
Q Consensus 299 --------------------------------------~~---------------------------------------- 300 (472)
++
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ----------------------------------------------------cchhHHHHHHHHHHhc--CCCCCCEEEE
Q 012059 301 ----------------------------------------------------ESNKKKQKLFDILMSK--QHFTPPAVVY 326 (472)
Q Consensus 301 ----------------------------------------------------~~~~~~~~l~~~l~~~--~~~~~~~lIf 326 (472)
....|...|..++... ...+.++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0122444455555442 2445799999
Q ss_pred ECCchhHHHHHHHHhhh-----------cCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCcEEE
Q 012059 327 VGSRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVI 394 (472)
Q Consensus 327 ~~~~~~~~~l~~~L~~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI 394 (472)
|+++..++.++..|... .|.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999742 35566778999999999999999999 9999999999999999999999999
Q ss_pred EecCCCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 395 IFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 395 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
+||.|+|+..|+||+|| ||. +.|.+++|+...+.
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp EESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999999 998 78999999988754
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-46 Score=400.23 Aligned_cols=329 Identities=19% Similarity=0.168 Sum_probs=254.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 154 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~li 154 (472)
.|..+++++.+...+...++-.|+++|.++++.+++|++++++||||||||++|++|++..+.. +.++||
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~----------g~rvlv 232 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN----------KQRVIY 232 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT----------TCEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc----------CCeEEE
Confidence 4566666666655555556668999999999999999999999999999999999999987643 678999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 012059 155 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 234 (472)
Q Consensus 155 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~ 234 (472)
++||++|+.|+++.+..++. .+..++|+... ..+++|+|+||++|.+++.+....+.++++|||||||+
T Consensus 233 l~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 233 TSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp EESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred EcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh
Confidence 99999999999999999865 45566666552 24589999999999999988877788999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CCCceEeecccccHH--HHHHHhhhcCCcEEEEeCCCCCCccceeEEEEE---------ecc
Q 012059 235 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQE--VEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW---------VES 302 (472)
Q Consensus 235 ~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~ 302 (472)
+.++++...+..++..+ +..++++||||+++. +..+.......+..+....... ..+.+++.. +..
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEET
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeecc
Confidence 99998899999998888 678999999999864 3344444444444333222111 111111110 000
Q ss_pred ----------------------------------------------hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHH
Q 012059 303 ----------------------------------------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLL 336 (472)
Q Consensus 303 ----------------------------------------------~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l 336 (472)
......++..+... ...++||||+++..|+.+
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~--~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT--TCCCEEEEESCHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc--CCCCEEEEeCcHHHHHHH
Confidence 11222333333332 346899999999999999
Q ss_pred HHHHhhhcCC---------------------------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 012059 337 SNAISVTTGM---------------------------------------KALSIHGEKPMKERREIMRSFLVGEVPVIVA 377 (472)
Q Consensus 337 ~~~L~~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 377 (472)
+..|.. .++ .+..+||+|++.+|..+++.|++|.++||||
T Consensus 458 a~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 458 ALKMSK-LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHTCS-HHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHh-ccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 998862 221 2789999999999999999999999999999
Q ss_pred eccccccCCCCCCcEEEEecC--------CCCHhHHHHhhcccccCC--CcceEEEEEcCCC
Q 012059 378 TGILGRGVELLGVRQVIIFDM--------PNSIKEYVHQIGRASQMG--DEGTAIVFVNEEN 429 (472)
Q Consensus 378 T~~~~~Gidi~~~~~VI~~~~--------p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~ 429 (472)
|+++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.|++++++..
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 999999999999999997665 347788999999999999 5799999998763
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.2e-45 Score=393.35 Aligned_cols=321 Identities=19% Similarity=0.258 Sum_probs=256.4
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
..|| .|+++|.++++.++.|+|++++||||||||++|+++++..+ ..++++||++||++||.|+++.++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~----------~~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------RKGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH----------TTTCCEEEEESSHHHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH----------hcCCeEEEEechHHHHHHHHHHHH
Confidence 4688 69999999999999999999999999999998888877655 246789999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcch---HHHHHHHhcC-CCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhh----------
Q 012059 171 LLGKGLPFKTALVVGGDAM---ARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML---------- 236 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~-~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~---------- 236 (472)
.++ ..++++..++||... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.
T Consensus 143 ~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 143 KLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp TTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred Hhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhh
Confidence 987 678899999999887 6666777766 99999999999887764 556789999999998655
Q ss_pred h-cCcHHH-HHHHHHhC------------CCCceEeeccc-ccHHHHH-HHhhhcCCcEEEEeCCCCCCccceeEEEEEe
Q 012059 237 Q-RGFRDQ-VMQIFRAI------------SLPQILMYSAT-ISQEVEK-MSSSISKDIVVVSVGKPNMPNKAVKQLAIWV 300 (472)
Q Consensus 237 ~-~~~~~~-~~~i~~~~------------~~~~~i~~SAT-~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 300 (472)
+ ++|... +..++..+ ...|++++||| .+..+.. +...... +.+.........+.+.+..+
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 295 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec
Confidence 3 677777 77777765 46799999999 5544332 2222222 22223333445566655544
Q ss_pred cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE--
Q 012059 301 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL-SIHGEKPMKERREIMRSFLVGEVPVIVA-- 377 (472)
Q Consensus 301 ~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vLva-- 377 (472)
.+...+..++... ++++||||+++..++.++..|. ..++.+. .+|| +|.+ ++.|++|+.+||||
T Consensus 296 ---~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~-~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 296 ---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLK-RFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp ---CCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHH-HTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEET
T ss_pred ---CHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHH-hCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEec
Confidence 3455666666652 3689999999999999999998 6799998 9998 2555 99999999999999
Q ss_pred --eccccccCCCCC-CcEEEEecCCC------------------------------------------------------
Q 012059 378 --TGILGRGVELLG-VRQVIIFDMPN------------------------------------------------------ 400 (472)
Q Consensus 378 --T~~~~~Gidi~~-~~~VI~~~~p~------------------------------------------------------ 400 (472)
|+++++|||+|+ +++||+||+|.
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~ 442 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVK 442 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 999999999999 99999999998
Q ss_pred ------------------CHhHHHHhhcccccCCCcc--eEEEEEcCCChHHHHHHHHHHHH
Q 012059 401 ------------------SIKEYVHQIGRASQMGDEG--TAIVFVNEENKNLFQELVDILKS 442 (472)
Q Consensus 401 ------------------s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 442 (472)
++.+|+||+||+||.|..| ..+.++..+|.+.++.+.+.++-
T Consensus 443 ~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 443 EMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp HHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred hccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 7789999999999976532 33444444788888888888873
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-44 Score=360.39 Aligned_cols=322 Identities=19% Similarity=0.248 Sum_probs=247.8
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|+|+|.++++.++.+ ++++.+|||+|||+++++++...+.. .+.++||++|+++|+.||.+++.++...
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~---------~~~~~liv~P~~~L~~q~~~~~~~~~~~ 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK---------YGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH---------SCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHHHhCc
Confidence 7899999999999998 99999999999999999998877642 3567999999999999999999998744
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHH-hCCCC
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR-AISLP 254 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~-~~~~~ 254 (472)
.+..+..++|+...... .....+++|+|+||+.+.+.+......+.++++||+||||++.+......+...+. ..+..
T Consensus 79 ~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp CGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred chhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 34577777777665543 33345689999999999999888777888999999999999986544444444443 34788
Q ss_pred ceEeecccccH---HHHHHHhhhcCCcEEEEeCCCCCC-----ccceeEEEEEe--------------------------
Q 012059 255 QILMYSATISQ---EVEKMSSSISKDIVVVSVGKPNMP-----NKAVKQLAIWV-------------------------- 300 (472)
Q Consensus 255 ~~i~~SAT~~~---~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~-------------------------- 300 (472)
+++++|||+.+ .+..+...+............... ...........
T Consensus 158 ~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
T 1wp9_A 158 LVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG 237 (494)
T ss_dssp CEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999973 344444444333322211111000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 012059 301 -------------------------------------------------------------------------------- 300 (472)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (472)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (494)
T 1wp9_A 238 LLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK 317 (494)
T ss_dssp SSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhh
Confidence
Q ss_pred ----------------------cchhHHHHHHHHHHhcC--CCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcC---
Q 012059 301 ----------------------ESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG--- 353 (472)
Q Consensus 301 ----------------------~~~~~~~~l~~~l~~~~--~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~--- 353 (472)
....+...+.+++.... ..+.++||||+++..++.+++.|. ..++.+..+||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELV-KDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH-HTTCCEEEECCSSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHH-HcCCCcEEEecccc
Confidence 11224445555555432 356799999999999999999998 66999999999
Q ss_pred -----CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC
Q 012059 354 -----EKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 354 -----~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|.|+++..|.||+||+||.|+ |.++.|+.+.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999987
Q ss_pred Ch
Q 012059 429 NK 430 (472)
Q Consensus 429 ~~ 430 (472)
+.
T Consensus 476 t~ 477 (494)
T 1wp9_A 476 TR 477 (494)
T ss_dssp SH
T ss_pred CH
Confidence 64
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-44 Score=387.45 Aligned_cols=334 Identities=16% Similarity=0.249 Sum_probs=209.1
Q ss_pred HHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 90 EAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 90 ~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
.-.|+..|+++|.++++.++.|+++++.+|||+|||++|++|++..+... ....++++||++|+++|+.|+++.+
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-----~~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-----PAGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-----CSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc-----cccCCCeEEEEeCCHHHHHHHHHHH
Confidence 34468899999999999999999999999999999999999998766441 1122678999999999999999999
Q ss_pred HHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC-CCCCeeEEEEeccchhhhcCcHHHH-HHH
Q 012059 170 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-ELDDIRMFVLDEVDCMLQRGFRDQV-MQI 247 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~-~~~~~~~iVvDE~h~~~~~~~~~~~-~~i 247 (472)
++++...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++||+||||++...+....+ ...
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~ 396 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHH
Confidence 99988778999999999876665556666799999999999999987766 6888999999999999876533322 233
Q ss_pred HHh-----CCCCceEeeccccc-----------HHHHHHHhhhcCCcEE------------------EEe-CCCCCCcc-
Q 012059 248 FRA-----ISLPQILMYSATIS-----------QEVEKMSSSISKDIVV------------------VSV-GKPNMPNK- 291 (472)
Q Consensus 248 ~~~-----~~~~~~i~~SAT~~-----------~~~~~~~~~~~~~~~~------------------i~~-~~~~~~~~- 291 (472)
+.. .+.++++++|||+. +.+..+...+....+. ... ........
T Consensus 397 ~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHH
Confidence 332 35588999999984 2232322222211111 100 00000000
Q ss_pred ----------------------ceeEEE-E---------Ee---------------------------------------
Q 012059 292 ----------------------AVKQLA-I---------WV--------------------------------------- 300 (472)
Q Consensus 292 ----------------------~~~~~~-~---------~~--------------------------------------- 300 (472)
.+.... . ++
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 00
Q ss_pred -----------------------------------------------------cchhHHHHHHHHHHhcC--CCCCCEEE
Q 012059 301 -----------------------------------------------------ESNKKKQKLFDILMSKQ--HFTPPAVV 325 (472)
Q Consensus 301 -----------------------------------------------------~~~~~~~~l~~~l~~~~--~~~~~~lI 325 (472)
....+...|..++.... ..+.++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 01223444555555432 44679999
Q ss_pred EECCchhHHHHHHHHhhh-----------cCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCcEE
Q 012059 326 YVGSRLGADLLSNAISVT-----------TGMKALSIHGEKPMKERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQV 393 (472)
Q Consensus 326 f~~~~~~~~~l~~~L~~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~V 393 (472)
||+++..++.++..|... .|.....+||+|++.+|.++++.|++ |+++|||||+++++|||+|++++|
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~V 716 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 716 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEE
T ss_pred EeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEE
Confidence 999999999999999843 15556677999999999999999999 999999999999999999999999
Q ss_pred EEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 394 IIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 394 I~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
|+||.|+|+..|+||+|| ||. ..|.+++|+...+.
T Consensus 717 I~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 717 VLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp EEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred EEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999 998 78999999987654
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-43 Score=378.56 Aligned_cols=318 Identities=19% Similarity=0.189 Sum_probs=248.3
Q ss_pred HHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHH
Q 012059 90 EAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 169 (472)
Q Consensus 90 ~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 169 (472)
..++|. |+++|.++++.+.+++++++++|||||||++|.++++..+. .+.++||++|+++|+.|+++.+
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHHHHHHH
Confidence 345774 99999999999999999999999999999999999887663 2578999999999999999999
Q ss_pred HHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHH
Q 012059 170 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~ 249 (472)
..++. .+..++|+.... .+++|+|+||++|.+++.+....+.++++|||||+|++.++++...+..++.
T Consensus 150 ~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 150 LAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 98865 456666665533 3579999999999999888777889999999999999999988888888888
Q ss_pred hC-CCCceEeecccccHHHHHHHhhh---cCCcEEEEeCCCCCCccceeEEEEE---------ecc--------------
Q 012059 250 AI-SLPQILMYSATISQEVEKMSSSI---SKDIVVVSVGKPNMPNKAVKQLAIW---------VES-------------- 302 (472)
Q Consensus 250 ~~-~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~-------------- 302 (472)
.+ +..+++++|||+++. .+++.++ ...+..+...... ...+.+++.. +..
T Consensus 219 ~l~~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp HSCTTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred hcCCCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 88 578999999999874 3344433 2333333222111 1112222211 000
Q ss_pred --------------------------------hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCC----
Q 012059 303 --------------------------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGM---- 346 (472)
Q Consensus 303 --------------------------------~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~---- 346 (472)
......++..+... ...++||||+++..++.++..|. ..++
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~-~~~~~~~~ 372 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMS-KLDFNSDD 372 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTT-TSCCCCHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHH-hCCCCChH
Confidence 11112233333322 23489999999999999999887 3222
Q ss_pred -----------------------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCc
Q 012059 347 -----------------------------------KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 391 (472)
Q Consensus 347 -----------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~ 391 (472)
.+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 378899999999999999999999999999999999999999999
Q ss_pred EEEE----ecC----CCCHhHHHHhhcccccCCC--cceEEEEEcCC-ChHHHHH
Q 012059 392 QVII----FDM----PNSIKEYVHQIGRASQMGD--EGTAIVFVNEE-NKNLFQE 435 (472)
Q Consensus 392 ~VI~----~~~----p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~-~~~~~~~ 435 (472)
+||+ ||. |.++.+|.||+|||||.|. .|.|++++++. +...+..
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 9999 998 8899999999999999997 49999999876 4434333
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.3e-45 Score=395.81 Aligned_cols=323 Identities=18% Similarity=0.287 Sum_probs=257.0
Q ss_pred HHHH-HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH
Q 012059 87 QNIE-AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 165 (472)
Q Consensus 87 ~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 165 (472)
+.+. .+||. | ++|.++++.+++|+|++++||||||||+ |.+|++..+.. .++++||++||++|+.|+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------~~~~~lil~PtreLa~Q~ 115 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---------KGKRCYVIFPTSLLVIQA 115 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------TSCCEEEEESCHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------cCCeEEEEeccHHHHHHH
Confidence 4443 47999 9 9999999999999999999999999998 89999887654 367899999999999999
Q ss_pred HHHHHHHhcCCCC----eEEEEEcCcchHHH---HHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 012059 166 EEQAKLLGKGLPF----KTALVVGGDAMARQ---VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 166 ~~~~~~~~~~~~~----~~~~~~~g~~~~~~---~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
++.++.++...++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||+++++
T Consensus 116 ~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~ 190 (1054)
T 1gku_B 116 AETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA 190 (1054)
T ss_dssp HHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS
T ss_pred HHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc
Confidence 9999999988888 88999999887663 333445 99999999999987764 668999999999999884
Q ss_pred CcHHHHHHHHHhC------------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHH
Q 012059 239 GFRDQVMQIFRAI------------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 306 (472)
Q Consensus 239 ~~~~~~~~i~~~~------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (472)
...+..++..+ ...|++++|||++.. ..+...++.++..+...........+.+.+. ...+.
T Consensus 191 --~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~ 264 (1054)
T 1gku_B 191 --SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESI 264 (1054)
T ss_dssp --THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCT
T ss_pred --cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHH
Confidence 56777777665 346899999999876 4333333333333333333333344555443 23444
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----ecccc
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA----TGILG 382 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva----T~~~~ 382 (472)
..+..++... ++++||||+++..++.++..|.. . +.+..+||++. .+++.|++|+.+|||| |++++
T Consensus 265 ~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~-~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 265 STLSSILEKL---GTGGIIYARTGEEAEEIYESLKN-K-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp TTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTT-S-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------
T ss_pred HHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhh-c-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeE
Confidence 5566666443 46899999999999999999984 4 89999999984 6889999999999999 89999
Q ss_pred ccCCCCCC-cEEEEecCC--------------------------------------------------------------
Q 012059 383 RGVELLGV-RQVIIFDMP-------------------------------------------------------------- 399 (472)
Q Consensus 383 ~Gidi~~~-~~VI~~~~p-------------------------------------------------------------- 399 (472)
+|||+|++ ++||++|.|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999995 999999999
Q ss_pred ---------CCHhHHHHhhcccccCCCcc--eEEEEEcCCChHHHHHHHHHHHH
Q 012059 400 ---------NSIKEYVHQIGRASQMGDEG--TAIVFVNEENKNLFQELVDILKS 442 (472)
Q Consensus 400 ---------~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 442 (472)
.+..+|+||+||+||.|..| .+++++..++...+..+.+.++.
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988775 58888888899999999998886
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.3e-44 Score=397.48 Aligned_cols=343 Identities=19% Similarity=0.260 Sum_probs=261.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
|.+...+.+...+|..++|+|.++++.++ +++|++++||||||||++|.+|++..+.. ..+.++||++|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~--------~~~~kavyi~P~r 982 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--------SSEGRCVYITPME 982 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH--------CTTCCEEEECSCH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh--------CCCCEEEEEcChH
Confidence 55667777777889999999999999997 56789999999999999999999998876 3466899999999
Q ss_pred HHHHHHHHHHHH-HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC--CCCCCeeEEEEeccchhh
Q 012059 160 ELCIQVEEQAKL-LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCML 236 (472)
Q Consensus 160 ~L~~q~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~--~~~~~~~~iVvDE~h~~~ 236 (472)
+||.|.++.+.+ ++...++++..++|+..... ....+++|+|||||+|..++.+.. ..+.++++||+||+|.+.
T Consensus 983 aLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~ 1059 (1724)
T 4f92_B 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC
Confidence 999999998865 66667888888888754332 233558999999999988776532 246789999999999887
Q ss_pred hcCcHHHHHHHHHhC--------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHH--
Q 012059 237 QRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK-- 306 (472)
Q Consensus 237 ~~~~~~~~~~i~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (472)
+. .+..++.++.++ +..|+|++|||+++ ..++++|+......+........+..++.++.........
T Consensus 1060 d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1060 GE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp ST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHH
T ss_pred CC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhh
Confidence 64 466555555433 56899999999997 6788888865542222222222233344443333222111
Q ss_pred -----HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhh---------------------------------hcCCeE
Q 012059 307 -----QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV---------------------------------TTGMKA 348 (472)
Q Consensus 307 -----~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~---------------------------------~~~~~~ 348 (472)
..+...+... ..++++||||+++..|+.++..|.. .....+
T Consensus 1138 ~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GI 1216 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGV 1216 (1724)
T ss_dssp HHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTE
T ss_pred hhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCE
Confidence 2223333333 3456899999999999888766631 113458
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ec------CCCCHhHHHHhhcccccCCC-
Q 012059 349 LSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD------MPNSIKEYVHQIGRASQMGD- 417 (472)
Q Consensus 349 ~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~------~p~s~~~~~Qr~GR~~R~g~- 417 (472)
..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+..+||. || .|.+..+|.||+|||||.|.
T Consensus 1217 a~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1217 GYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 89999999999999999999999999999999999999999888883 32 36689999999999999997
Q ss_pred -cceEEEEEcCCChHHHHHHH
Q 012059 418 -EGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 418 -~g~~~~~~~~~~~~~~~~l~ 437 (472)
.|.|++++.+.+...+..++
T Consensus 1297 ~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1297 DEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp SCEEEEEEEEGGGHHHHHHHT
T ss_pred CceEEEEEecchHHHHHHHHh
Confidence 59999999998877766553
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=386.12 Aligned_cols=325 Identities=19% Similarity=0.281 Sum_probs=226.0
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHH-HHHHHHHhc
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-EEQAKLLGK 174 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~~~ 174 (472)
.|+++|.++++.++.|+++++.+|||+|||++|++|++..+..... .+.+.++||++|+++|+.|| .+.+++++.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----HTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----cCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999988765321 12346799999999999999 999999976
Q ss_pred CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHH------HcCCCCCCCeeEEEEeccchhhhcCcH-HHHHHH
Q 012059 175 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL------MKHDIELDDIRMFVLDEVDCMLQRGFR-DQVMQI 247 (472)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~------~~~~~~~~~~~~iVvDE~h~~~~~~~~-~~~~~i 247 (472)
. ++.+..++|+.........+..+++|+|+||++|.+.+ ......+.++++|||||||++....+. ..+...
T Consensus 83 ~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp T-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred c-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 5 47888888887766555566678999999999999888 344567788999999999998654422 222222
Q ss_pred HHhC--------------CCCceEeecccccH-----------HHHHHHhhhcCCcEEEEeCC-CC---CCccceeEEEE
Q 012059 248 FRAI--------------SLPQILMYSATISQ-----------EVEKMSSSISKDIVVVSVGK-PN---MPNKAVKQLAI 298 (472)
Q Consensus 248 ~~~~--------------~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~i~~~~-~~---~~~~~~~~~~~ 298 (472)
+... +.++++++|||+.. .+..+...+....+...... .. ......... .
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~-~ 240 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF-A 240 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE-E
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE-E
Confidence 2221 66899999999975 22223222222110000000 00 000000000 0
Q ss_pred Eec-----------------------------------------------------------------------------
Q 012059 299 WVE----------------------------------------------------------------------------- 301 (472)
Q Consensus 299 ~~~----------------------------------------------------------------------------- 301 (472)
...
T Consensus 241 ~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (699)
T 4gl2_A 241 IADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMI 320 (699)
T ss_dssp EEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred EcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred ----------------------------------------------------------chhHHHHHHHHHHhcC--CC-C
Q 012059 302 ----------------------------------------------------------SNKKKQKLFDILMSKQ--HF-T 320 (472)
Q Consensus 302 ----------------------------------------------------------~~~~~~~l~~~l~~~~--~~-~ 320 (472)
...+...|..++.... .. +
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~ 400 (699)
T 4gl2_A 321 DAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEES 400 (699)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 0001111222222211 11 5
Q ss_pred CCEEEEECCchhHHHHHHHHhhhc------CCeEEEEcCC--------CCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 012059 321 PPAVVYVGSRLGADLLSNAISVTT------GMKALSIHGE--------KPMKERREIMRSFLVGEVPVIVATGILGRGVE 386 (472)
Q Consensus 321 ~~~lIf~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 386 (472)
+++||||+++..++.++..|. .. |+.+..+||+ |++.+|.++++.|++|+++|||||+++++|||
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~-~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWIT-ENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHH-SSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CcEEEEECcHHHHHHHHHHHH-hCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999998 44 7899999999 99999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 387 LLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 387 i~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
+|++++||+||+|+|+..|+||+|||||.| +.++++....+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999999999987754 44444544443
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-44 Score=370.41 Aligned_cols=339 Identities=15% Similarity=0.208 Sum_probs=251.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHhhHhcC------CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc
Q 012059 83 QKLLQNIEAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 156 (472)
Q Consensus 83 ~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~------~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~ 156 (472)
+.+.+.+..+|| .|+++|.++++.++++ .++++++|||||||++|++|++..+.. +.+++|++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----------g~qvlvla 424 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----------GFQTAFMV 424 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----------TSCEEEEC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----------CCeEEEEe
Confidence 344455678899 9999999999998854 589999999999999999999987643 56799999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH---HHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 157 PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 157 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
||++|+.|+++.+.++....++++..++|+....+. ...+.. .++|+|+||+.+.+ ...+.++++||+||+
T Consensus 425 Ptr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 425 PTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESC
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEeccc
Confidence 999999999999999998888999999998876553 333444 49999999987744 346788999999999
Q ss_pred chhhhcCcHHHHHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDI 312 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (472)
|++.... ...+......+++++||||+......+......+...+.. .......+... .........+...
T Consensus 500 Hr~g~~q----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~--~p~~r~~i~~~---~~~~~~~~~l~~~ 570 (780)
T 1gm5_A 500 HRFGVKQ----REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDE--MPPGRKEVQTM---LVPMDRVNEVYEF 570 (780)
T ss_dssp CCC---------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECC--CCSSCCCCEEC---CCCSSTHHHHHHH
T ss_pred chhhHHH----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeec--cCCCCcceEEE---EeccchHHHHHHH
Confidence 9974221 1111112256899999999865444433221222222221 11111122211 2223345566677
Q ss_pred HHhcCCCCCCEEEEECCch--------hHHHHHHHHhh-h-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 012059 313 LMSKQHFTPPAVVYVGSRL--------GADLLSNAISV-T-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 382 (472)
Q Consensus 313 l~~~~~~~~~~lIf~~~~~--------~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 382 (472)
+.+....+.+++|||+..+ .++.+++.|.. . .+..+..+||+|++.+|+.+++.|++|+++|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 7666666788999999653 47788888874 2 367899999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEecCCC-CHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 012059 383 RGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGI 447 (472)
Q Consensus 383 ~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 447 (472)
+|+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++++.+. ...+..+.++.....+
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~-~~~~rl~~l~~~~dgf 715 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE-EAMERLRFFTLNTDGF 715 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH-HHHHHHHHHHTCCCSH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh-HHHHHHHHHHhhhccc
Confidence 999999999999999996 688999999999999999999999984443 3334445555544433
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.8e-43 Score=391.70 Aligned_cols=338 Identities=17% Similarity=0.206 Sum_probs=255.6
Q ss_pred CCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhc-ccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 93 GYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLH-HSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~-~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
||..++++|+++++.++ +++|++++||||||||++|.++++..+...... ......+.++||++|+++||+|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999987 688999999999999999999999988753221 1122357789999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCC--CCCCeeEEEEeccchhhhcCcHHHHHHHH
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI--ELDDIRMFVLDEVDCMLQRGFRDQVMQIF 248 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~--~~~~~~~iVvDE~h~~~~~~~~~~~~~i~ 248 (472)
+.....++++..++|+...... ...+++|+|||||++..++.+... .+.++++||+||+|.+.+ .++..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888889999999988664331 134689999999999776654321 367899999999998765 4566665555
Q ss_pred HhC--------CCCceEeecccccHHHHHHHhhhcCCcE--EEEeCCCCCCccceeEEEEEecchhH---H----HHHHH
Q 012059 249 RAI--------SLPQILMYSATISQEVEKMSSSISKDIV--VVSVGKPNMPNKAVKQLAIWVESNKK---K----QKLFD 311 (472)
Q Consensus 249 ~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~---~----~~l~~ 311 (472)
.++ +..|+|++|||+++ ..++++++..++. ........ .+..+.+.+........ . ..+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~-RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF-RPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG-CSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC-ccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 432 67899999999997 6778887755421 11112111 22234444333332211 1 12222
Q ss_pred HHHhcCCCCCCEEEEECCchhHHHHHHHHhh------------------------------------hcCCeEEEEcCCC
Q 012059 312 ILMSKQHFTPPAVVYVGSRLGADLLSNAISV------------------------------------TTGMKALSIHGEK 355 (472)
Q Consensus 312 ~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~------------------------------------~~~~~~~~~~~~~ 355 (472)
.+.+ ...++++||||+++..|+.++..|.+ .....+.++||+|
T Consensus 310 ~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 310 KIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 2322 23456899999999999988887752 1234588999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE----ec------CCCCHhHHHHhhcccccCCC--cceEEE
Q 012059 356 PMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD------MPNSIKEYVHQIGRASQMGD--EGTAIV 423 (472)
Q Consensus 356 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~------~p~s~~~~~Qr~GR~~R~g~--~g~~~~ 423 (472)
++.+|..+++.|++|.++|||||+++++|||+|+.++||. |+ .|.+..+|.||+|||||.|. .|.+++
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999885 44 35689999999999999885 599999
Q ss_pred EEcCCChHHHHHHH
Q 012059 424 FVNEENKNLFQELV 437 (472)
Q Consensus 424 ~~~~~~~~~~~~l~ 437 (472)
++.+++...+..++
T Consensus 469 ~~~~~~~~~~~~ll 482 (1724)
T 4f92_B 469 ITSHGELQYYLSLL 482 (1724)
T ss_dssp EEESTTCCHHHHHT
T ss_pred EecchhHHHHHHHH
Confidence 99998876665554
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2e-43 Score=357.50 Aligned_cols=322 Identities=18% Similarity=0.201 Sum_probs=231.9
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|. .|+++|..+++.++.|+ +..++||+|||++|++|++...+. ++.++|++||++||.|.++++..
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~----------g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT----------SSCCEEEESSHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 565 89999999999999998 999999999999999999865432 45799999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcCC------CCCCCeeEEEEeccchhh-hcC----
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCML-QRG---- 239 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~~------~~~~~~~~iVvDE~h~~~-~~~---- 239 (472)
++..+++++.+++||.... .+....+++|+|+||++| .+++..+- ..+..+.++|+||||+|+ +++
T Consensus 138 l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 138 LFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 9999999999999998754 344455799999999999 78877542 457889999999999998 443
Q ss_pred -----------cHHHHHHHHHhCC---------------------CCceE------------------------eecccc
Q 012059 240 -----------FRDQVMQIFRAIS---------------------LPQIL------------------------MYSATI 263 (472)
Q Consensus 240 -----------~~~~~~~i~~~~~---------------------~~~~i------------------------~~SAT~ 263 (472)
+...+..++..++ ..+++ ++|||.
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 5566777776664 23433 788886
Q ss_pred cHHHHHH-----HhhhcC--------CcE-----------------------------EEEeCCCCCCcccee-------
Q 012059 264 SQEVEKM-----SSSISK--------DIV-----------------------------VVSVGKPNMPNKAVK------- 294 (472)
Q Consensus 264 ~~~~~~~-----~~~~~~--------~~~-----------------------------~i~~~~~~~~~~~~~------- 294 (472)
+.....+ +..++. +.. .+.+.........+.
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~ 375 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRL 375 (853)
T ss_dssp -------------------------------------------------------------CCCCCEEEEEEEHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhh
Confidence 5421111 111110 000 000100000000011
Q ss_pred ----------------------------------------EEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHH
Q 012059 295 ----------------------------------------QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 334 (472)
Q Consensus 295 ----------------------------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~ 334 (472)
....+.....|...+...+......+.++||||+|+..++
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 1123455567778888888665556678999999999999
Q ss_pred HHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC------------------------
Q 012059 335 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV------------------------ 390 (472)
Q Consensus 335 ~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~------------------------ 390 (472)
.++..|. ..|+++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 456 ~Ls~~L~-~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 456 LVSNELT-KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp HHHHHHH-HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHH-HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 9999998 7899999999999888888888889888 599999999999999973
Q ss_pred -------------cEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChH
Q 012059 391 -------------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKN 431 (472)
Q Consensus 391 -------------~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 431 (472)
.+||+++.|.|...|.||+||+||.|.+|.+++|++..|..
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred hhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999988743
No 38
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3e-42 Score=349.17 Aligned_cols=336 Identities=18% Similarity=0.208 Sum_probs=260.6
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
..|+ .|+++|..+++.++.|+ |..++||+|||++|.+|++...+. +..++||+||++||.|.++++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 4688 99999999999999998 999999999999999999765443 4569999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcC------CCCCCCeeEEEEeccchhh-hc----
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCML-QR---- 238 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~------~~~~~~~~~iVvDE~h~~~-~~---- 238 (472)
.++..+++++.+++||.+... +....+++|+|+||++| .+++..+ ...+..+.++||||||+|+ +.
T Consensus 174 ~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 174 RVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 999999999999999987543 33444699999999999 7777654 3557789999999999998 42
Q ss_pred -----------CcHHHHHHHHHhCC----------CCceE-----------------eecccccH---HHHHHH--hhhc
Q 012059 239 -----------GFRDQVMQIFRAIS----------LPQIL-----------------MYSATISQ---EVEKMS--SSIS 275 (472)
Q Consensus 239 -----------~~~~~~~~i~~~~~----------~~~~i-----------------~~SAT~~~---~~~~~~--~~~~ 275 (472)
+|...+..++..++ ..+++ ++|||.+. .+.... ..++
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~ 331 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELF 331 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHC
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHh
Confidence 47788999999885 45666 88999764 333221 1121
Q ss_pred C-C--cE-----EEEeCCC-------------------------------------------------------------
Q 012059 276 K-D--IV-----VVSVGKP------------------------------------------------------------- 286 (472)
Q Consensus 276 ~-~--~~-----~i~~~~~------------------------------------------------------------- 286 (472)
. + ++ ++.+...
T Consensus 332 ~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~E 411 (922)
T 1nkt_A 332 SRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAE 411 (922)
T ss_dssp CBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHH
Confidence 1 1 11 1111100
Q ss_pred --------------CCCccce-eEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEE
Q 012059 287 --------------NMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 351 (472)
Q Consensus 287 --------------~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 351 (472)
+.+.... .....+.....|...+...+......+.++||||+|+..++.++..|. ..|+++..+
T Consensus 412 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~-~~Gi~~~vL 490 (922)
T 1nkt_A 412 LHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFT-KRRIPHNVL 490 (922)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH-HTTCCCEEE
T ss_pred HHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCCEEEe
Confidence 0000000 001234455567777888776654556789999999999999999998 789999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC-----------------------------------------
Q 012059 352 HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV----------------------------------------- 390 (472)
Q Consensus 352 ~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~----------------------------------------- 390 (472)
||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 568 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999877887777888877 599999999999999964
Q ss_pred -----------cEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHH----HHHHHHHHHcC
Q 012059 391 -----------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF----QELVDILKSSG 444 (472)
Q Consensus 391 -----------~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~ 444 (472)
.+||+++.|.|...|.||+||+||.|.+|.+.+|++..|.-+. ..+..+++..+
T Consensus 569 ~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 569 KEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLN 637 (922)
T ss_dssp HHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTT
T ss_pred HhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhC
Confidence 4999999999999999999999999999999999998875332 34555555544
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.7e-42 Score=368.57 Aligned_cols=307 Identities=21% Similarity=0.228 Sum_probs=240.2
Q ss_pred CCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
++| .|+++|.++++.+++|+++++.+|||||||++|++++...+. .+.++||++|+++|+.|+++.+..
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 456 589999999999999999999999999999999998877542 367899999999999999999988
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
+.. ++.+..++|+.... ...+|+|+||++|.+++......+.++++|||||||++.++++...+..++..+
T Consensus 105 ~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l 175 (997)
T 4a4z_A 105 TFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML 175 (997)
T ss_dssp TC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS
T ss_pred HcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhc
Confidence 653 46777888876533 347999999999999998877778899999999999999998888888888888
Q ss_pred -CCCceEeecccccHHHHHHHhhhc----CCcEEEEeCCCCCCccceeEEEE-------E--------------------
Q 012059 252 -SLPQILMYSATISQEVEKMSSSIS----KDIVVVSVGKPNMPNKAVKQLAI-------W-------------------- 299 (472)
Q Consensus 252 -~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~-------~-------------------- 299 (472)
+..+++++|||+++.. ++..++. .....+.......+ +.+.+. .
T Consensus 176 ~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~p---l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 176 PQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVP---LEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp CTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSC---EEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred ccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCcc---ceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 5689999999998643 4555543 22222222111111 111100 0
Q ss_pred ------------------------------------------------------------------ecchhHHHHHHHHH
Q 012059 300 ------------------------------------------------------------------VESNKKKQKLFDIL 313 (472)
Q Consensus 300 ------------------------------------------------------------------~~~~~~~~~l~~~l 313 (472)
.........++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 01112344555555
Q ss_pred HhcCCCCCCEEEEECCchhHHHHHHHHhhhcCC---------------------------------------eEEEEcCC
Q 012059 314 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTGM---------------------------------------KALSIHGE 354 (472)
Q Consensus 314 ~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~~~~~~ 354 (472)
... ...++||||+++..|+.++..|. ..++ .+..+||+
T Consensus 332 ~~~--~~~~~IVF~~sr~~~e~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 332 RKR--ELLPMVVFVFSKKRCEEYADWLE-GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp HHT--TCCSEEEECSCHHHHHHHHHTTT-TCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred HhC--CCCCEEEEECCHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 543 34689999999999999999886 3333 57899999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCC---------CHhHHHHhhcccccCC--CcceEEE
Q 012059 355 KPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN---------SIKEYVHQIGRASQMG--DEGTAIV 423 (472)
Q Consensus 355 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~---------s~~~~~Qr~GR~~R~g--~~g~~~~ 423 (472)
|++.+|+.+++.|++|.++|||||+++++|||+|+ ..||+++.|. |..+|+||+|||||.| ..|.|++
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999 6666655555 9999999999999998 4588888
Q ss_pred EEc
Q 012059 424 FVN 426 (472)
Q Consensus 424 ~~~ 426 (472)
++.
T Consensus 488 l~~ 490 (997)
T 4a4z_A 488 MAY 490 (997)
T ss_dssp ECC
T ss_pred ecC
Confidence 884
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.7e-40 Score=359.78 Aligned_cols=324 Identities=18% Similarity=0.200 Sum_probs=249.4
Q ss_pred CCCCHHHHHHHH-HCCCCCCCHHHHHHHhhHhc----CC--cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 79 CSLSQKLLQNIE-AAGYDMPTPVQMQAIPSALS----GK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 79 ~~l~~~i~~~l~-~~g~~~~~~~Q~~~i~~~~~----~~--~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
++.+..+.+.+. .++|. +||+|.++++.++. ++ ++++++|||+|||++|+++++..+. .+++
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----------~g~~ 654 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----------NHKQ 654 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----------TTCE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----------hCCe
Confidence 456667766664 56884 79999999999885 66 8999999999999999988877643 3568
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH---HHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEE
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 227 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~i 227 (472)
++|++||++|+.|+++.+.+.....++++..+.+.....+. ...+.. .++|+|+||+.+. ....+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceE
Confidence 99999999999999999998887778888888776554433 233444 4999999997552 34568899999
Q ss_pred EEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHH
Q 012059 228 VLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 306 (472)
Q Consensus 228 VvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (472)
|+||+|++. ......+..+ ...++++||||+......+......+...+... ......+.............
T Consensus 730 IiDEaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~~~i~ 802 (1151)
T 2eyq_A 730 IVDEEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDSMVVR 802 (1151)
T ss_dssp EEESGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCHHHHH
T ss_pred EEechHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCHHHHH
Confidence 999999963 2233444444 678999999998766666655555554433221 11122233333322222222
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccC
Q 012059 307 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGV 385 (472)
Q Consensus 307 ~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 385 (472)
..+. .....+++++|||++...++.+++.|++.. +..+..+||+|++.+|+.+++.|++|+++|||||+++++|+
T Consensus 803 ~~il----~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 803 EAIL----REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHH----HHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHH----HHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 2222 222356789999999999999999998432 78899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecC-CCCHhHHHHhhcccccCCCcceEEEEEcCCC
Q 012059 386 ELLGVRQVIIFDM-PNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 429 (472)
Q Consensus 386 di~~~~~VI~~~~-p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 429 (472)
|+|++++||+++. +.+..+|.||+||+||.|+.|.|++++++.+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999988 5689999999999999999999999997653
No 41
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-40 Score=302.93 Aligned_cols=238 Identities=34% Similarity=0.554 Sum_probs=216.3
Q ss_pred CCCHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcch
Q 012059 47 SLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTA 126 (472)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~ 126 (472)
.++.++++.+++..++.++|...|.|..+|+++++++.+.+.+.+.||..|+++|.++++.+++|+++++.+|||||||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeC
Q 012059 127 SFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGT 206 (472)
Q Consensus 127 ~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~T 206 (472)
+|++|++.++..... .....++++||++||++|+.|+++.++.+....++.+..++||.....+...+..+++|+|+|
T Consensus 82 ~~~l~~l~~l~~~~~--~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T 159 (242)
T 3fe2_A 82 SYLLPAIVHINHQPF--LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 159 (242)
T ss_dssp HHHHHHHHHHHTSCC--CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHHHhccc--cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEEC
Confidence 999999998865321 122457889999999999999999999998888899999999999988888888899999999
Q ss_pred hHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCC
Q 012059 207 PGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 285 (472)
Q Consensus 207 p~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 285 (472)
|+++.+++......+.++++||+||||++.+++|...+..++..+ +..|++++|||+++.+..+++.++.+++.+.++.
T Consensus 160 p~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 160 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999998888889999999999999999999999999999988 6789999999999999999999999999988765
Q ss_pred C
Q 012059 286 P 286 (472)
Q Consensus 286 ~ 286 (472)
.
T Consensus 240 ~ 240 (242)
T 3fe2_A 240 L 240 (242)
T ss_dssp -
T ss_pred C
Confidence 4
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.8e-42 Score=352.65 Aligned_cols=325 Identities=13% Similarity=0.156 Sum_probs=241.1
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 79 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 79 ~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
+++++.+.+.+... ...++|+|..+++.+++++++++.+|||||||++|++|++..+.. .+.++||++||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------~~~~vLvl~Pt 224 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---------RRLRTLILAPT 224 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESS
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCeEEEEcCh
Confidence 34555544444332 478899988889999999999999999999999999999988765 35789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 012059 159 RELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 159 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
++||.|+++.+.. ..+. +.+.... .....+..+.++|.+.+...+... ..+.++++||+||||++ +.
T Consensus 225 reLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 225 RVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Cc
Confidence 9999999987752 2222 2111100 001123567788888887766554 35788999999999998 66
Q ss_pred CcHHHHHHHHHhC--CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhc
Q 012059 239 GFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK 316 (472)
Q Consensus 239 ~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 316 (472)
++...+..++..+ +..|+++||||++..+..+.. .++..+...... +. .+...++..+.+
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-~~-------------~~~~~ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-PE-------------RSWNTGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-CS-------------SCCSSSCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-CH-------------HHHHHHHHHHHh-
Confidence 6777777777666 678999999999876543322 122222211110 00 000122233333
Q ss_pred CCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEE---
Q 012059 317 QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQV--- 393 (472)
Q Consensus 317 ~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V--- 393 (472)
..+++||||+++..++.+++.|. ..+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLR-KSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHH-HTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred --CCCCEEEEECChhHHHHHHHHHH-HcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEEC
Confidence 25689999999999999999998 679999999984 788899999999999999999999999998 8888
Q ss_pred -----------------EEecCCCCHhHHHHhhcccccCCC-cceEEEEEc---CCChHHHHHHHHHHHHcCCCCCHHHH
Q 012059 394 -----------------IIFDMPNSIKEYVHQIGRASQMGD-EGTAIVFVN---EENKNLFQELVDILKSSGAGIPRELI 452 (472)
Q Consensus 394 -----------------I~~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~l~ 452 (472)
|+++.|.+.++|+||+||+||.|. .|.|++|+. +.|...+..+...+.....++|..+.
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~~ 505 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGII 505 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcchh
Confidence 778889999999999999999975 899999998 77888888888888777777766543
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.7e-42 Score=347.33 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=230.0
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
..|+++|.++++.+++++++++++|||+|||++|+.++...+.. .+.++||++|+++|+.||.+.++++..
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 38999999999999999999999999999999999888876543 234899999999999999999999866
Q ss_pred CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CC
Q 012059 175 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SL 253 (472)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~ 253 (472)
..+..+..++++....++ ...+.+|+|+||+.+.. .....+.++++||+||||++.. ..+..++..+ +.
T Consensus 183 ~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 655778888887665543 34568999999997643 2334577899999999999864 4566777777 67
Q ss_pred CceEeecccccHHHHHHHh-hhcCCcEEEEeCCC------CCCccceeEEEEEec---------------------chhH
Q 012059 254 PQILMYSATISQEVEKMSS-SISKDIVVVSVGKP------NMPNKAVKQLAIWVE---------------------SNKK 305 (472)
Q Consensus 254 ~~~i~~SAT~~~~~~~~~~-~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~---------------------~~~~ 305 (472)
.+++++|||+++....... .....+........ ......+........ ...+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 7999999999765322111 11111222111111 011111111111111 0112
Q ss_pred HHHHHHHHHhcCCCCC-CEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccc
Q 012059 306 KQKLFDILMSKQHFTP-PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT-GILGR 383 (472)
Q Consensus 306 ~~~l~~~l~~~~~~~~-~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~ 383 (472)
...+..++......++ ++|||++ ...++.+++.|. ..+..+..+||+++..+|+++++.|++|+.+||||| +++++
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~-~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIK-NEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHH-TTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHH-HcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 2334444544333333 4556555 888999999998 556699999999999999999999999999999999 99999
Q ss_pred cCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEc
Q 012059 384 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 426 (472)
Q Consensus 384 Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 426 (472)
|+|+|++++||+++.|++...|.||+||+||.|+.|.++++++
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999998774444444
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.4e-41 Score=336.61 Aligned_cols=310 Identities=14% Similarity=0.173 Sum_probs=223.7
Q ss_pred CCCCCCHHHHHHHhhHhcCCcE-EEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 93 GYDMPTPVQMQAIPSALSGKSL-LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~~~~~~~~-iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
|+.+|+|+|. ++|.+++++++ ++++|||||||++|++|++..+.. .++++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~g 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEMEEALRG 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHHHHHhcC
Confidence 6789999985 79999988877 999999999999999999987654 357899999999999999987742
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHH--
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR-- 249 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~-- 249 (472)
..+......... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +..+...+..+..
T Consensus 71 ------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~ 137 (451)
T 2jlq_A 71 ------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 137 (451)
T ss_dssp ------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH
T ss_pred ------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh
Confidence 222211111100 11234679999999998877655 45788999999999987 3332332222222
Q ss_pred hCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECC
Q 012059 250 AISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGS 329 (472)
Q Consensus 250 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~ 329 (472)
..+..++++||||++.....+ +...+..+..... .+.... ..+...+.+ ..+++||||++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p~~~~-------------~~~~~~l~~---~~~~~lVF~~s 197 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-IPERSW-------------NTGFDWITD---YQGKTVWFVPS 197 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-CCSSCC-------------SSSCHHHHH---CCSCEEEECSS
T ss_pred cCCCceEEEEccCCCccchhh---hcCCCceEecCcc-CCchhh-------------HHHHHHHHh---CCCCEEEEcCC
Confidence 236889999999998744322 2222222222111 110000 001222322 24589999999
Q ss_pred chhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEec------------
Q 012059 330 RLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD------------ 397 (472)
Q Consensus 330 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~------------ 397 (472)
+..++.++..|. ..++.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 198 ~~~a~~l~~~L~-~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~ 271 (451)
T 2jlq_A 198 IKAGNDIANCLR-KSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGP 271 (451)
T ss_dssp HHHHHHHHHHHH-TTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSS
T ss_pred HHHHHHHHHHHH-HcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccc
Confidence 999999999998 67899999999754 57899999999999999999999999999 9999998
Q ss_pred --------CCCCHhHHHHhhcccccCCC-cceEEEEEcCCC---hHHHHHHHHHHHHcCCCCCHHH
Q 012059 398 --------MPNSIKEYVHQIGRASQMGD-EGTAIVFVNEEN---KNLFQELVDILKSSGAGIPREL 451 (472)
Q Consensus 398 --------~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~l 451 (472)
.|.+..+|+||+||+||.|. .|.+++|+..++ ..........+...+.++|.++
T Consensus 272 ~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 272 ERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp CEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred ceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 789988875442 2222222444556677777665
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.8e-40 Score=331.07 Aligned_cols=292 Identities=20% Similarity=0.217 Sum_probs=221.8
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|+++|.++++.++.++++++++|||+|||++|+.++... +.++||++|+++|+.||.+.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------~~~~Lvl~P~~~L~~Q~~~~~~~~--- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF--- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------------CSCEEEEESSHHHHHHHHHHGGGG---
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEECCHHHHHHHHHHHHhC---
Confidence 7999999999999999999999999999999998887653 456999999999999999998884
Q ss_pred CCCe-EEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCC
Q 012059 176 LPFK-TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLP 254 (472)
Q Consensus 176 ~~~~-~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~ 254 (472)
++. +..+.|+.. ...+|+|+||+.+...+... ..++++||+||||++.+.++. .++..++..
T Consensus 157 -~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~----~~~~~~~~~ 219 (472)
T 2fwr_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSIAP 219 (472)
T ss_dssp -CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTH----HHHHTCCCS
T ss_pred -CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHH----HHHHhcCCC
Confidence 566 666666654 24799999999997766421 235899999999999887765 366677889
Q ss_pred ceEeecccccH-------------------HHHHHHhhhcCCcEEEE--eCCCCC------------------------C
Q 012059 255 QILMYSATISQ-------------------EVEKMSSSISKDIVVVS--VGKPNM------------------------P 289 (472)
Q Consensus 255 ~~i~~SAT~~~-------------------~~~~~~~~~~~~~~~i~--~~~~~~------------------------~ 289 (472)
+++++|||+.. ....+...++.++.... ...... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999862 12333333333322111 100000 0
Q ss_pred ccceeEEE---------------------EEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeE
Q 012059 290 NKAVKQLA---------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKA 348 (472)
Q Consensus 290 ~~~~~~~~---------------------~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~ 348 (472)
...+...+ .......+...+.+++.. ..+.++||||++...++.++..|. +
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~------~ 371 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL------I 371 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT------C
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC------c
Confidence 00000000 001223455667777766 346789999999999999998874 4
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCc-ceE--EEEE
Q 012059 349 LSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE-GTA--IVFV 425 (472)
Q Consensus 349 ~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~-g~~--~~~~ 425 (472)
..+||+++..+|+++++.|++|+++|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|+. +.+ +.++
T Consensus 372 ~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv 451 (472)
T 2fwr_A 372 PAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELI 451 (472)
T ss_dssp CBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEE
T ss_pred ceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEE
Confidence 5689999999999999999999999999999999999999999999999999999999999999999954 344 4455
Q ss_pred cCC
Q 012059 426 NEE 428 (472)
Q Consensus 426 ~~~ 428 (472)
+..
T Consensus 452 ~~~ 454 (472)
T 2fwr_A 452 SRG 454 (472)
T ss_dssp ECS
T ss_pred eCC
Confidence 544
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.8e-42 Score=336.74 Aligned_cols=288 Identities=16% Similarity=0.190 Sum_probs=201.9
Q ss_pred hHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 012059 107 SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG 186 (472)
Q Consensus 107 ~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g 186 (472)
.+++|+++++++|||||||++|++|++..+.. .+++++|++||++||.|+++.+..+ .+. +.++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~-~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHGL------DVK-FHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS------CEE-EESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhcC------CeE-Eecc
Confidence 45689999999999999999999999987754 3568999999999999999887643 121 1111
Q ss_pred cchHHHHHHHhcCCCEEEeChHHHH---------HHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHh--CCCCc
Q 012059 187 DAMARQVYRIQQGVELIVGTPGRLI---------DLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA--ISLPQ 255 (472)
Q Consensus 187 ~~~~~~~~~~~~~~~I~i~Tp~~l~---------~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~--~~~~~ 255 (472)
.. -.++||+++. ..+. ....+.++++||+||+|++ +.++...+..+... ....+
T Consensus 68 ~~-------------~~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 68 AF-------------SAHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp CC-------------CCCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred cc-------------eeccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 10 0255664442 2222 2345788999999999998 33332222222222 26789
Q ss_pred eEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHH
Q 012059 256 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 335 (472)
Q Consensus 256 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~ 335 (472)
+++||||++..+..+.... .++.. ....+.... ...++..+.+ .++++||||+++..++.
T Consensus 133 ~l~~SAT~~~~~~~~~~~~--~~~~~--------------~~~~~~~~~-~~~~~~~l~~---~~~~~lVF~~s~~~a~~ 192 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHSN--GEIED--------------VQTDIPSEP-WNTGHDWILA---DKRPTAWFLPSIRAANV 192 (440)
T ss_dssp EEEECSSCTTCCCSSCCCS--SCEEE--------------EECCCCSSC-CSSSCHHHHH---CCSCEEEECSCHHHHHH
T ss_pred EEEEeCCCCchhhhhhhcC--CCeeE--------------eeeccChHH-HHHHHHHHHh---cCCCEEEEeCCHHHHHH
Confidence 9999999987544332211 11111 000011111 1112223332 25689999999999999
Q ss_pred HHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE-------------------e
Q 012059 336 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-------------------F 396 (472)
Q Consensus 336 l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~-------------------~ 396 (472)
++..|+ ..++.+..+|| ++|..+++.|++|+++|||||+++++|+|+| +++||+ +
T Consensus 193 l~~~L~-~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 193 MAASLR-KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp HHHHHH-HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred HHHHHH-HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 999998 66899999999 4688899999999999999999999999999 999986 8
Q ss_pred cCCCCHhHHHHhhcccccC-CCcceEEEEE---cCCChHHHHHHHHHHHHcCCCCCHHH
Q 012059 397 DMPNSIKEYVHQIGRASQM-GDEGTAIVFV---NEENKNLFQELVDILKSSGAGIPREL 451 (472)
Q Consensus 397 ~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~l 451 (472)
+.|.+..+|.||+||+||. |.+|.|++|+ ++.+...+..+...+.....++|...
T Consensus 267 ~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 267 PLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM 325 (440)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred ccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence 9999999999999999997 6789999996 67788888888888877777776654
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.1e-40 Score=341.35 Aligned_cols=338 Identities=16% Similarity=0.182 Sum_probs=247.5
Q ss_pred CcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh-cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCC
Q 012059 71 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 149 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 149 (472)
.+..+|+++++++.+.+.+...+ ..|++.|.++++.++ .+++++++||||||||+ ++|++..... .. .+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~~---~~~g 140 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--MP---HLEN 140 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--CG---GGGT
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--cc---cCCC
Confidence 35678999999999999998887 789999999999887 55789999999999999 5666622111 10 1235
Q ss_pred ceEEEEcCCHHHHHHHHHHHHHHh-cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEE
Q 012059 150 PLAMVLTPTRELCIQVEEQAKLLG-KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 228 (472)
Q Consensus 150 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iV 228 (472)
.++++++|+++|+.|+.+.+.... ...+..+......... ...+.+|+++||+++.+.+... ..+.++++||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 679999999999999887665543 2222222221111111 1245789999999999877664 3588999999
Q ss_pred Eeccch-hhhcC-cHHHHHHHHHhCCCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHH
Q 012059 229 LDEVDC-MLQRG-FRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK 306 (472)
Q Consensus 229 vDE~h~-~~~~~-~~~~~~~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (472)
+||+|. .++.. ....+..+....+..+++++|||++. ..+.+.+...++ +...... ..+.+.+.........
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~~~~~~~v-i~v~gr~---~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQRYFNDAPL-LAVPGRT---YPVELYYTPEFQRDYL 287 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHHHTTSCCE-EECCCCC---CCEEEECCSSCCSCHH
T ss_pred ecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHHHhcCCCc-ccccCcc---cceEEEEecCCchhHH
Confidence 999996 44432 23445555555678899999999963 345554443443 3333222 1244433333333333
Q ss_pred HHHHHHHHhc--CCCCCCEEEEECCchhHHHHHHHHhh----------hcCCeEEEEcCCCCHHHHHHHHHHHh-----c
Q 012059 307 QKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISV----------TTGMKALSIHGEKPMKERREIMRSFL-----V 369 (472)
Q Consensus 307 ~~l~~~l~~~--~~~~~~~lIf~~~~~~~~~l~~~L~~----------~~~~~~~~~~~~~~~~~r~~~~~~f~-----~ 369 (472)
...+..+... ....+++||||+++..++.++..|.. ..++.+..+||++++++|..+++.|. +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 3333332221 12357899999999999999999973 14778999999999999999999999 9
Q ss_pred CCCcEEEEeccccccCCCCCCcEEEEecC------------------CCCHhHHHHhhcccccCCCcceEEEEEcCCCh
Q 012059 370 GEVPVIVATGILGRGVELLGVRQVIIFDM------------------PNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 430 (472)
Q Consensus 370 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 430 (472)
|..+|||||+++++|||+|++++||+++. |.|..+|.||+|||||. ..|.|+.|+++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999999877 88999999999999999 78999999986654
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.4e-40 Score=337.90 Aligned_cols=315 Identities=15% Similarity=0.193 Sum_probs=220.4
Q ss_pred HHHCCCC-----CCCHHHH-----HHHhhHh------cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 89 IEAAGYD-----MPTPVQM-----QAIPSAL------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 89 l~~~g~~-----~~~~~Q~-----~~i~~~~------~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
+..+||. .|+++|. ++++.++ +++++++++|||||||++|++|++..+.. .+.++
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---------~~~~~ 273 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---------KRLRT 273 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---------TTCCE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCcE
Confidence 3445666 8999999 9999988 89999999999999999999999987654 35789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
||++||++||.|+++.+..+ ++. ...+. .. .....+.-+-+.+.+.+.+.+... ..+.++++||+||+
T Consensus 274 lilaPTr~La~Q~~~~l~~~----~i~---~~~~~-l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEa 341 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGL----PVR---YLTPA-VQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEA 341 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTS----CCE---ECCC-------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEEST
T ss_pred EEEccHHHHHHHHHHHHhcC----Cee---eeccc-cc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCC
Confidence 99999999999999887754 221 11110 00 000011234445555555544443 46889999999999
Q ss_pred chhhhcCcHHHHHHHHHhC--CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHH
Q 012059 233 DCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 310 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (472)
|++ +..+...+..+.... ...++++||||++..+..+... ..++..... ..... ....++
T Consensus 342 H~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~--------------~~~~~-~~~~~l 403 (673)
T 2wv9_A 342 HFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS--------------EIPDR-AWSSGF 403 (673)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCCSS-CCSSCC
T ss_pred ccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee--------------ecCHH-HHHHHH
Confidence 998 222222222222222 6789999999998654332221 111111000 00111 111122
Q ss_pred HHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 012059 311 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 390 (472)
Q Consensus 311 ~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 390 (472)
..+.+ .++++||||+++..++.++..|+ ..++.+..+||+ +|.++++.|++|+++|||||+++++|||+| +
T Consensus 404 ~~l~~---~~~~~lVF~~s~~~~e~la~~L~-~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v 474 (673)
T 2wv9_A 404 EWITD---YAGKTVWFVASVKMSNEIAQCLQ-RAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-A 474 (673)
T ss_dssp HHHHS---CCSCEEEECSSHHHHHHHHHHHH-TTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-C
T ss_pred HHHHh---CCCCEEEEECCHHHHHHHHHHHH-hCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-C
Confidence 23332 35689999999999999999998 669999999993 789999999999999999999999999999 9
Q ss_pred cEEEE--------------------ecCCCCHhHHHHhhcccccC-CCcceEEEEE---cCCChHHHHHHHHHHHHcCCC
Q 012059 391 RQVII--------------------FDMPNSIKEYVHQIGRASQM-GDEGTAIVFV---NEENKNLFQELVDILKSSGAG 446 (472)
Q Consensus 391 ~~VI~--------------------~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~ 446 (472)
++||+ |+.|.+.++|.||+||+||. |+.|.|++|+ ++.+...+..+...+.....+
T Consensus 475 ~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~ 554 (673)
T 2wv9_A 475 SRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIH 554 (673)
T ss_dssp SEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSC
T ss_pred cEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhcc
Confidence 99998 67899999999999999999 7889999996 567777777776666554445
Q ss_pred CCHHH
Q 012059 447 IPREL 451 (472)
Q Consensus 447 ~~~~l 451 (472)
++..+
T Consensus 555 ~~~g~ 559 (673)
T 2wv9_A 555 LPNGL 559 (673)
T ss_dssp BTTTB
T ss_pred CCchh
Confidence 55443
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.6e-39 Score=319.70 Aligned_cols=273 Identities=16% Similarity=0.192 Sum_probs=196.7
Q ss_pred HhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEE
Q 012059 105 IPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVV 184 (472)
Q Consensus 105 i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 184 (472)
...+.+++++++++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+.. ..+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhcC------ceEeEEe
Confidence 4445678999999999999999999999988764 357899999999999999988762 2222111
Q ss_pred cCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch-----hhhcCcHHHHHHHHHhCCCCceEee
Q 012059 185 GGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-----MLQRGFRDQVMQIFRAISLPQILMY 259 (472)
Q Consensus 185 ~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~-----~~~~~~~~~~~~i~~~~~~~~~i~~ 259 (472)
+.... .-..+..+.++|.+.+...+... ..+.++++||+||||+ +...++... ....+..++++|
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~----~~~~~~~~~il~ 149 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT----KVELGEAAAIFM 149 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH----HHHTTSCEEEEE
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH----HhccCCccEEEE
Confidence 11100 01234567888998887766654 4578999999999998 333333222 222378999999
Q ss_pred cccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHH
Q 012059 260 SATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNA 339 (472)
Q Consensus 260 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~ 339 (472)
|||++..+..+... ..++...... .+... ...+...+.+. .+++||||+++..++.++..
T Consensus 150 SAT~~~~~~~~~~~--~~pi~~~~~~--~~~~~-------------~~~~~~~l~~~---~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 150 TATPPGTTDPFPDS--NAPIHDLQDE--IPDRA-------------WSSGYEWITEY---AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEEECC--CCSSC-------------CSSCCHHHHHC---CSCEEEECSCHHHHHHHHHH
T ss_pred EcCCCcchhhhccC--CCCeEEeccc--CCcch-------------hHHHHHHHHhc---CCCEEEEeCChHHHHHHHHH
Confidence 99998754332221 2222221110 00000 00111223222 56899999999999999999
Q ss_pred HhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEE--------------------ecCC
Q 012059 340 ISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII--------------------FDMP 399 (472)
Q Consensus 340 L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~--------------------~~~p 399 (472)
|+ ..++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|
T Consensus 210 L~-~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 210 LQ-RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HH-HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HH-hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 98 679999999995 6778999999999999999999999999999 99999 7799
Q ss_pred CCHhHHHHhhcccccCCC-cceEEEEEcCC
Q 012059 400 NSIKEYVHQIGRASQMGD-EGTAIVFVNEE 428 (472)
Q Consensus 400 ~s~~~~~Qr~GR~~R~g~-~g~~~~~~~~~ 428 (472)
.|..+|+||+||+||.|. .|.+++|+...
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999997 89999999875
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.7e-39 Score=324.29 Aligned_cols=278 Identities=16% Similarity=0.152 Sum_probs=207.8
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.++++|.++++.+.++++++++||||||||++|.+++++ .+.++||++||++||.|+++.+.+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~~-- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKAH-- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHHh--
Confidence 345567676777778899999999999999999888774 24579999999999999988776654
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCC-C
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-P 254 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~-~ 254 (472)
+..+...+|+.. ...+.+|+|+||++| +....+.+.++++||+||||+ .+.++...+..++..++. .
T Consensus 282 -g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 282 -GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp -SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTT
T ss_pred -CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcC
Confidence 334555666644 245689999999997 455667788899999999975 466777788888888743 3
Q ss_pred c--eEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh
Q 012059 255 Q--ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 255 ~--~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~ 332 (472)
+ ++++|||++..+. ........+...... .+ ........ + .....+++||||++++.
T Consensus 350 ~~llil~SAT~~~~i~----~~~p~i~~v~~~~~~----~i----~~~~~~~~-------l--~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 350 ARLVVLATATPPGSVT----VPHPNIEEVALSNTG----EI----PFYGKAIP-------I--EAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp CSEEEEEESSCTTCCC----CCCTTEEEEECBSCS----SE----EETTEEEC-------G--GGSSSSEEEEECSCHHH
T ss_pred CceEEEECCCCCcccc----cCCcceEEEeecccc----hh----HHHHhhhh-------h--hhccCCcEEEEeCCHHH
Confidence 3 6788999987321 000011111111000 01 00000000 0 11245689999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEE----------Eec-----
Q 012059 333 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI----------IFD----- 397 (472)
Q Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI----------~~~----- 397 (472)
++.+++.|+ ..++.+..+||++++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 409 ae~la~~L~-~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~ 479 (666)
T 3o8b_A 409 CDELAAKLS-GLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTF 479 (666)
T ss_dssp HHHHHHHHH-TTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSC
T ss_pred HHHHHHHHH-hCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccc
Confidence 999999998 67999999999999764 5567779999999999999997 99988 677
Q ss_pred ------CCCCHhHHHHhhcccccCCCcceEEEEEcCCChHH
Q 012059 398 ------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL 432 (472)
Q Consensus 398 ------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 432 (472)
.|.+.++|+||+||+|| |++|. +.|+++.+...
T Consensus 480 gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 480 TIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 88999 99998877554
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-37 Score=285.85 Aligned_cols=237 Identities=34% Similarity=0.590 Sum_probs=201.2
Q ss_pred hcCceeeCCCCCC--cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 59 RLEINVKGDAVPA--PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 59 ~~~~~~~~~~~p~--~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
++.+.++|...|. +..+|+++++++.+.+.|...||..|+++|.++++.+++++++++.+|||||||++|++|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4557788888887 88999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhcc--cCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHH
Q 012059 137 ANIRLHH--SQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLL 214 (472)
Q Consensus 137 ~~~~~~~--~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~ 214 (472)
....... .....++++||++||++|+.|+++.++.+....++.+..++||.....+...+..+++|+|+||+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 6532110 01234578999999999999999999999888888999999999888887888888999999999999999
Q ss_pred HcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--C---CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCC
Q 012059 215 MKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP 289 (472)
Q Consensus 215 ~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~ 289 (472)
......+.++++||+||||++.+++|...+..++..+ + ..|++++|||+++.+..+++.++.++..+.++.....
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 245 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 8888788999999999999999999999999999964 3 5789999999999999999999999999888766555
Q ss_pred ccceeE
Q 012059 290 NKAVKQ 295 (472)
Q Consensus 290 ~~~~~~ 295 (472)
...++|
T Consensus 246 ~~~i~q 251 (253)
T 1wrb_A 246 SDSIKQ 251 (253)
T ss_dssp ------
T ss_pred cCCcee
Confidence 444444
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.3e-38 Score=325.49 Aligned_cols=306 Identities=16% Similarity=0.196 Sum_probs=188.8
Q ss_pred CCCHHHHHHHhhHhc----C-CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHH-HHH
Q 012059 96 MPTPVQMQAIPSALS----G-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE-EQA 169 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~----~-~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~-~~~ 169 (472)
.|+++|.++++.++. + +++++++|||||||++++ +++..+....+.......++++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999874 4 669999999999999854 444445442222112235788999999999999998 766
Q ss_pred HHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc----CCCCCCCeeEEEEeccchhhhcCcHHHHH
Q 012059 170 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK----HDIELDDIRMFVLDEVDCMLQRGFRDQVM 245 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~----~~~~~~~~~~iVvDE~h~~~~~~~~~~~~ 245 (472)
+.++. ....+.++. ...+.+|+|+||++|...... ..+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 66542 233332221 234689999999999887642 23345678999999999987543 35567
Q ss_pred HHHHhCCCCceEeecccccHHHHHHHhhhcCC------------------cEEEEeCCCCC--C-----------cccee
Q 012059 246 QIFRAISLPQILMYSATISQEVEKMSSSISKD------------------IVVVSVGKPNM--P-----------NKAVK 294 (472)
Q Consensus 246 ~i~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~------------------~~~i~~~~~~~--~-----------~~~~~ 294 (472)
.++..++..++++||||+..........++.. +.......... . ...+.
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 78888888999999999863222111112222 11111110000 0 00000
Q ss_pred EEEEEecc-------hhHHH----HHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhc-------CCeEEEEcCCCC
Q 012059 295 QLAIWVES-------NKKKQ----KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-------GMKALSIHGEKP 356 (472)
Q Consensus 295 ~~~~~~~~-------~~~~~----~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~ 356 (472)
........ ..+.. .+...+... ...+++||||+++.+++.++..|.+.. +..+..+||+++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000000 01111 233333332 345789999999999999999997321 223778899886
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCC
Q 012059 357 MKERREIMRSFLVGEVP---VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD 417 (472)
Q Consensus 357 ~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~ 417 (472)
. +|+.+++.|++|+.+ |||||+++++|+|+|++++||+++.|+|...|.||+||+||.+.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 88999999999999999999999999999999999999999875
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.1e-37 Score=303.32 Aligned_cols=268 Identities=12% Similarity=0.150 Sum_probs=190.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
+|+++++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 47899999999999999999999976654 35689999999999999887765 2344433332111
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHh--CCCCceEeecccccHHH
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA--ISLPQILMYSATISQEV 267 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~--~~~~~~i~~SAT~~~~~ 267 (472)
....+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+... .+..++++||||++..+
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred -----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 1123456778899988776665 446889999999999997 33333333333332 25799999999998743
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCe
Q 012059 268 EKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMK 347 (472)
Q Consensus 268 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~ 347 (472)
..+... ..++. ... ..... .+...+...+.+ .++++||||+++..++.+++.|+ ..+..
T Consensus 139 ~~~~~~--~~~i~-~~~-------------~~~~~-~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~-~~~~~ 197 (431)
T 2v6i_A 139 EAFPPS--NSPII-DEE-------------TRIPD-KAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQ-KAGKK 197 (431)
T ss_dssp CSSCCC--SSCCE-EEE-------------CCCCS-SCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHH-HTTCC
T ss_pred hhhcCC--CCcee-ecc-------------ccCCH-HHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHH-HcCCe
Confidence 222111 11111 000 00000 111122333433 25689999999999999999998 56999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcE-----------------EEEecCCCCHhHHHHhhc
Q 012059 348 ALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQ-----------------VIIFDMPNSIKEYVHQIG 410 (472)
Q Consensus 348 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~-----------------VI~~~~p~s~~~~~Qr~G 410 (472)
+..+||+ +|+++++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+..+|.||+|
T Consensus 198 v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~G 272 (431)
T 2v6i_A 198 VLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRG 272 (431)
T ss_dssp EEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHT
T ss_pred EEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhh
Confidence 9999997 577899999999999999999999999999 544 678899999999999999
Q ss_pred ccccCCC-cceEEEEE
Q 012059 411 RASQMGD-EGTAIVFV 425 (472)
Q Consensus 411 R~~R~g~-~g~~~~~~ 425 (472)
|+||.|. .|.++++.
T Consensus 273 R~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 273 RIGRNPEKLGDIYAYS 288 (431)
T ss_dssp TSSCCTTCCCCEEEEC
T ss_pred ccCCCCCCCCeEEEEc
Confidence 9999985 45555555
No 54
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.2e-37 Score=275.52 Aligned_cols=215 Identities=35% Similarity=0.516 Sum_probs=185.6
Q ss_pred CCCCCCcccCccc-CCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhccc
Q 012059 66 GDAVPAPILSFSS-CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 144 (472)
Q Consensus 66 ~~~~p~~~~~~~~-~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~ 144 (472)
+...|.|..+|++ +++++.+++.+.+.||..|+++|.++++.+++|+++++.+|||||||++|++|++..+.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~- 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR- 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh-
Confidence 4567999999999 79999999999999999999999999999999999999999999999999999998876432211
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 145 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 145 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
....++++||++||++|+.|+++.++.+. ..++.+..++||.....+...+..+++|+|+||+++.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12357889999999999999999999986 45688899999988887777888899999999999999998888889999
Q ss_pred eEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEE
Q 012059 225 RMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVS 282 (472)
Q Consensus 225 ~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~ 282 (472)
++||+||||++.+++|...+..++..+ +..|++++|||+++.+..+++.++.+++.+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999988 5789999999999999999999999988765
No 55
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=279.35 Aligned_cols=229 Identities=36% Similarity=0.606 Sum_probs=197.4
Q ss_pred HHHHHHHhcCceeeCCCCCCcccCcccC----CCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 52 QTDSLRKRLEINVKGDAVPAPILSFSSC----SLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
+++.++++..+.+.|...|.|..+|+++ ++++.+++.+.+.||..|+++|.++++.+++|+++++.+|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4678899999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH-HHhcCCCEEEeC
Q 012059 128 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY-RIQQGVELIVGT 206 (472)
Q Consensus 128 ~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~I~i~T 206 (472)
|++|++..+.. ....++++||++||++|+.|+++.++++....++.+..+.|+........ ....+++|+|+|
T Consensus 83 ~~l~~l~~l~~------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 156 (245)
T 3dkp_A 83 FSIPILMQLKQ------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT 156 (245)
T ss_dssp HHHHHHHHHCS------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEEC
T ss_pred HHHHHHHHHhh------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEEC
Confidence 99999988754 22356789999999999999999999998888888777766543322111 123468999999
Q ss_pred hHHHHHHHHcC--CCCCCCeeEEEEeccchhhh---cCcHHHHHHHHHhC--CCCceEeecccccHHHHHHHhhhcCCcE
Q 012059 207 PGRLIDLLMKH--DIELDDIRMFVLDEVDCMLQ---RGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIV 279 (472)
Q Consensus 207 p~~l~~~~~~~--~~~~~~~~~iVvDE~h~~~~---~~~~~~~~~i~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 279 (472)
|+++.+++... ...+.++++||+||||++.+ .+|...+..++..+ +..++++||||+++++..+++.++.+++
T Consensus 157 p~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~ 236 (245)
T 3dkp_A 157 PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI 236 (245)
T ss_dssp HHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCE
Confidence 99999999876 46788999999999999988 46888888888776 5679999999999999999999999999
Q ss_pred EEEeCCC
Q 012059 280 VVSVGKP 286 (472)
Q Consensus 280 ~i~~~~~ 286 (472)
.+.++..
T Consensus 237 ~i~~~~~ 243 (245)
T 3dkp_A 237 SVSIGAR 243 (245)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 8887654
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.8e-36 Score=305.67 Aligned_cols=309 Identities=14% Similarity=0.191 Sum_probs=217.4
Q ss_pred CCCHHHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
.|+|+|.++++.+. .++++++.++||+|||++++..+ ..+.. .+...++|||||+ .|+.||.+++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~-------~~~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKK-------ENELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHH-------TTCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHh-------cCCCCCEEEEccH-HHHHHHHHHHHH
Confidence 79999999998763 67899999999999999865444 33332 1345679999995 688999999999
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
+... .++..+.|+... ......+|+|+||+.+.+... +....+++||+||||++.+.+ ......+..+
T Consensus 108 ~~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l 175 (500)
T 1z63_A 108 FAPH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL 175 (500)
T ss_dssp HCTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS
T ss_pred HCCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh
Confidence 9754 455555554421 112457999999999865433 223468999999999997654 3455666777
Q ss_pred CCCceEeecccccH----HHHHHHh---------------------------------hhcCCcEEEEeCCC------CC
Q 012059 252 SLPQILMYSATISQ----EVEKMSS---------------------------------SISKDIVVVSVGKP------NM 288 (472)
Q Consensus 252 ~~~~~i~~SAT~~~----~~~~~~~---------------------------------~~~~~~~~i~~~~~------~~ 288 (472)
+..+.+++|||+.. ++..+.. .++... .+..... ..
T Consensus 176 ~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~-~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPF-ILRRTKYDKAIINDL 254 (500)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTT-EECCCTTCHHHHTTS
T ss_pred ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhH-eeeecccccchhhcC
Confidence 88889999999832 1111111 111111 1111100 11
Q ss_pred CccceeEEEEEec---------------------------------------------------------chhHHHHHHH
Q 012059 289 PNKAVKQLAIWVE---------------------------------------------------------SNKKKQKLFD 311 (472)
Q Consensus 289 ~~~~~~~~~~~~~---------------------------------------------------------~~~~~~~l~~ 311 (472)
+. .......+. ...|...+.+
T Consensus 255 p~--~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 255 PD--KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp CS--EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred CC--CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 11 111111211 1233344455
Q ss_pred HHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEeccccccCCCCC
Q 012059 312 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP-VIVATGILGRGVELLG 389 (472)
Q Consensus 312 ~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~Gidi~~ 389 (472)
++......+.++||||.+...++.++..|....+..+..+||+++..+|.++++.|++| ... +|++|+++++|+|+|+
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 55555456779999999999999999999854589999999999999999999999998 555 7899999999999999
Q ss_pred CcEEEEecCCCCHhHHHHhhcccccCCCcceE--EEEEcCC
Q 012059 390 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 428 (472)
Q Consensus 390 ~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 428 (472)
+++||++|+|+++..|.||+||++|.|+.+.+ +.++...
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999987655 4455544
No 57
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=272.85 Aligned_cols=207 Identities=32% Similarity=0.558 Sum_probs=188.4
Q ss_pred CcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCc
Q 012059 71 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNP 150 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 150 (472)
.+..+|+++++++.+.+.+..+||..|+++|.++++.+++|+++++.+|||||||++|++|++..+... ..++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------~~~~ 112 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-------PQRL 112 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CCSS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-------CCCc
Confidence 356789999999999999999999999999999999999999999999999999999999999887651 3457
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHc-CCCCCCCeeEEEE
Q 012059 151 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVL 229 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~-~~~~~~~~~~iVv 229 (472)
++||++||++|+.|+++.++++....++.+..++||.....+...+..+++|+|+||+++.+.+.. ....+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 899999999999999999999988888899999999888887777888999999999999998876 4567889999999
Q ss_pred eccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeC
Q 012059 230 DEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVG 284 (472)
Q Consensus 230 DE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 284 (472)
||||++.+++|...+..++..+ +..+++++|||++..+..+++.++.++..+.++
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999988 478999999999999999999999999887653
No 58
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6e-37 Score=328.12 Aligned_cols=332 Identities=16% Similarity=0.180 Sum_probs=228.3
Q ss_pred CCCHHHHHHHhhHhc--CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~--~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.|+|+|.+++..++. +.+++++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+..
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS--------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT--------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh--------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 799999999999885 4589999999999999987776665433 345579999999 99999999997664
Q ss_pred cCCCCeEEEEEcCcchHHHHHH---HhcCCCEEEeChHHHHHHHHc-CCCCCCCeeEEEEeccchhhhcCcH-HHHHHHH
Q 012059 174 KGLPFKTALVVGGDAMARQVYR---IQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVLDEVDCMLQRGFR-DQVMQIF 248 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~I~i~Tp~~l~~~~~~-~~~~~~~~~~iVvDE~h~~~~~~~~-~~~~~i~ 248 (472)
++.+..+.++. ....... .....+|+|+|++.+...... ..+...++++||+||||++.+.+.. ......+
T Consensus 224 ---~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 224 ---NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp ---CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred ---CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 34444443322 2111111 112468999999888542111 1122457899999999999755421 1122333
Q ss_pred HhC--CCCceEeecccccH----HHHHH----------------------------HhhhcCC-----------------
Q 012059 249 RAI--SLPQILMYSATISQ----EVEKM----------------------------SSSISKD----------------- 277 (472)
Q Consensus 249 ~~~--~~~~~i~~SAT~~~----~~~~~----------------------------~~~~~~~----------------- 277 (472)
..+ ..++++++|||+.. ++..+ ...+...
T Consensus 300 ~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~ 379 (968)
T 3dmq_A 300 EQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGE 379 (968)
T ss_dssp HHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCT
T ss_pred HHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc
Confidence 333 56789999999731 00000 0000000
Q ss_pred -----------------------------------cEEEEeCCC---CCCccceeEEE----------------------
Q 012059 278 -----------------------------------IVVVSVGKP---NMPNKAVKQLA---------------------- 297 (472)
Q Consensus 278 -----------------------------------~~~i~~~~~---~~~~~~~~~~~---------------------- 297 (472)
.+.+..... ..+........
T Consensus 380 ~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (968)
T 3dmq_A 380 QDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKS 459 (968)
T ss_dssp TCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhh
Confidence 000000000 00000000000
Q ss_pred -----------------------EEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCC
Q 012059 298 -----------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGE 354 (472)
Q Consensus 298 -----------------------~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 354 (472)
.+.....|...+..++.. ..+.++||||+++..++.++..|....|+.+..+||+
T Consensus 460 ~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~ 537 (968)
T 3dmq_A 460 AEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537 (968)
T ss_dssp GGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTT
T ss_pred hHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 112233466677777765 4567899999999999999999985569999999999
Q ss_pred CCHHHHHHHHHHHhcCC--CcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHH
Q 012059 355 KPMKERREIMRSFLVGE--VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL 432 (472)
Q Consensus 355 ~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 432 (472)
|++.+|+.+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.++++....+...
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 99999999999999998 9999999999999999999999999999999999999999999999987777665544444
Q ss_pred HHHHHHHHHH
Q 012059 433 FQELVDILKS 442 (472)
Q Consensus 433 ~~~l~~~l~~ 442 (472)
...+.+.+.+
T Consensus 618 ee~i~~~~~~ 627 (968)
T 3dmq_A 618 QSVLVRWYHE 627 (968)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555555543
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.2e-36 Score=272.92 Aligned_cols=214 Identities=32% Similarity=0.541 Sum_probs=177.5
Q ss_pred eeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcc
Q 012059 64 VKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHH 143 (472)
Q Consensus 64 ~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~ 143 (472)
+.....|.+..+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||||||++|++|++..+..
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~----- 94 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI----- 94 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT-----
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-----
Confidence 344556778899999999999999999999999999999999999999999999999999999999999987643
Q ss_pred cCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcC-CCEEEeChHHHHHHHHcCCCCCC
Q 012059 144 SQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQG-VELIVGTPGRLIDLLMKHDIELD 222 (472)
Q Consensus 144 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~I~i~Tp~~l~~~~~~~~~~~~ 222 (472)
...++++||++||++|+.|+++.++.++...++.+..++||.....+...+..+ ++|+|+||+++.+++......+.
T Consensus 95 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 95 --EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp --TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred --cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcc
Confidence 134678999999999999999999999888888888999988877766666655 89999999999999988877888
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeC
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVG 284 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 284 (472)
++++||+||||++.+++|...+..++..+ ...+++++|||+++.+..+++.++.++..+.+.
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999888 578999999999999999999999998877553
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=7.9e-36 Score=269.21 Aligned_cols=211 Identities=29% Similarity=0.533 Sum_probs=181.2
Q ss_pred eCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhccc
Q 012059 65 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 144 (472)
Q Consensus 65 ~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~ 144 (472)
.++..|.+..+|+++++++.+.+.+...||..|+++|.++++.+++|+++++.+|||+|||++|++|++..+..
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------ 88 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ 88 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 35667888899999999999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 145 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 145 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
...++++||++||++|+.|+++.++.+.... ++++..++||.....+...+ .+++|+|+||+++.+++......+.+
T Consensus 89 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 89 -ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred -cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccccc
Confidence 1346789999999999999999999998665 68888888888766654444 57999999999999999887778889
Q ss_pred eeEEEEeccchhhhcC-cHHHHHHHHHhCC-CCceEeecccccHHHHHHHhhhcCCcEEEEe
Q 012059 224 IRMFVLDEVDCMLQRG-FRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSV 283 (472)
Q Consensus 224 ~~~iVvDE~h~~~~~~-~~~~~~~i~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 283 (472)
+++||+||||++.+++ |...+..++..++ ..|++++|||+++.+..+...++.++..+..
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999987 9999999999985 7889999999999999999999998887654
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-35 Score=261.63 Aligned_cols=201 Identities=33% Similarity=0.570 Sum_probs=182.9
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEE
Q 012059 74 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 153 (472)
Q Consensus 74 ~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~l 153 (472)
.+|+++++++.+++.+...||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ...++++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------~~~~~~~l 75 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-------KKDNIQAM 75 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-------TSCSCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-------cCCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999987643 13467899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEecc
Q 012059 154 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 232 (472)
Q Consensus 154 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~ 232 (472)
|++|+++|+.|+++.++.+.... +..+..++|+....+....+..+++|+|+||+++.+.+......+.++++||+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 99999999999999999998776 68888899998888777777788999999999999999888778899999999999
Q ss_pred chhhhcCcHHHHHHHHHhCC-CCceEeecccccHHHHHHHhhhcCCcEEE
Q 012059 233 DCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVV 281 (472)
Q Consensus 233 h~~~~~~~~~~~~~i~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~i 281 (472)
|++.+.++...+..++..++ ..+++++|||+++.+..+++.++.++..+
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999885 78999999999999999999999888765
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=265.83 Aligned_cols=227 Identities=32% Similarity=0.488 Sum_probs=193.0
Q ss_pred CHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhh
Q 012059 49 TIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~ 128 (472)
+.++.+.+++.++. ..+.+..+|+++++++.+.+.+...||..|+++|.++++.+++|+++++.+|||+|||++|
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 5 ERESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cHhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34556666666553 1245677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChH
Q 012059 129 LVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPG 208 (472)
Q Consensus 129 ~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~ 208 (472)
++|++..+..... ....++++||++||++|+.|+.+.++.++...++.+..++|+.....+...+ .+++|+|+||+
T Consensus 80 ~~~~l~~l~~~~~---~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~ 155 (236)
T 2pl3_A 80 LVPVLEALYRLQW---TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPG 155 (236)
T ss_dssp HHHHHHHHHHTTC---CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHH
T ss_pred HHHHHHHHHhhcc---cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHH
Confidence 9999988765321 1134678999999999999999999999888888999999988776655544 57999999999
Q ss_pred HHHHHHHcC-CCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeC
Q 012059 209 RLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVG 284 (472)
Q Consensus 209 ~l~~~~~~~-~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 284 (472)
++.+.+... ...+.++++||+||||++.+++|...+..++..+ +..+++++|||+++.+..+++.++.++..+.+.
T Consensus 156 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 156 RLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999988764 4567889999999999999999999999999998 477899999999999999999999999887664
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-36 Score=267.86 Aligned_cols=207 Identities=26% Similarity=0.450 Sum_probs=182.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceE
Q 012059 73 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 152 (472)
Q Consensus 73 ~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~ 152 (472)
..+|+++++++.+.+.+.+.||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ...++++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------~~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------ERAEVQA 75 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-------TSCSCCE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-------CcCCceE
Confidence 467999999999999999999999999999999999999999999999999999999999987643 1346789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC----CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEE
Q 012059 153 MVLTPTRELCIQVEEQAKLLGKGL----PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFV 228 (472)
Q Consensus 153 lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iV 228 (472)
||++||++|+.|+++.++++.... ++.+..++||.........+..+++|+|+||+++.+.+......+.++++||
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 999999999999999999998766 6788888888776655444455789999999999999988777888999999
Q ss_pred EeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCC
Q 012059 229 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP 286 (472)
Q Consensus 229 vDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 286 (472)
+||||++.++++...+..++..+ +..|++++|||+++.+.++++.++.+|..+.....
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred EcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 99999999999999999999988 47899999999999999999999999988876543
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.1e-35 Score=264.53 Aligned_cols=210 Identities=30% Similarity=0.572 Sum_probs=180.0
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCC
Q 012059 68 AVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQ 147 (472)
Q Consensus 68 ~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~ 147 (472)
..+++..+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.. ..
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-------~~ 80 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------SV 80 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------TC
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-------cC
Confidence 45677889999999999999999999999999999999999999999999999999999999999987643 23
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEE
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMF 227 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~i 227 (472)
.++++||++|+++|+.|+++.+..+....++.+..++|+.........+. .++|+|+||+++.+.+......+.++++|
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 46789999999999999999999998888888988888877666554443 38999999999999998888788999999
Q ss_pred EEeccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeCC
Q 012059 228 VLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 285 (472)
Q Consensus 228 VvDE~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 285 (472)
|+||||++.++++...+..++..+ +..+++++|||+++.+..+.+.++.++..+.+..
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999888 5788999999999999999999999998876543
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.2e-35 Score=301.32 Aligned_cols=274 Identities=18% Similarity=0.227 Sum_probs=202.0
Q ss_pred hhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEc
Q 012059 106 PSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVG 185 (472)
Q Consensus 106 ~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 185 (472)
...+++++++++||||||||+ +++..+.. .+..+|++||++||.|+++.++.. ++.+..++|
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~----------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG 211 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFS----------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTG 211 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHH----------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECS
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHh----------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEEC
Confidence 345688999999999999998 33333333 123599999999999999998875 467778888
Q ss_pred CcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCC--CCceEeecccc
Q 012059 186 GDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS--LPQILMYSATI 263 (472)
Q Consensus 186 g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~--~~~~i~~SAT~ 263 (472)
+..... ..-....+++++|++.+. ....+++||+||+|++.+.++...+..++..++ ..+++++|||.
T Consensus 212 ~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~ 281 (677)
T 3rc3_A 212 EERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI 281 (677)
T ss_dssp SCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH
T ss_pred CeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH
Confidence 765410 000012678888874332 246789999999999999999999998888874 57889999996
Q ss_pred cHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhh
Q 012059 264 SQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT 343 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~ 343 (472)
+. +..+......... +........ .. ..... +..+.. .....+|||+++..++.++..|. .
T Consensus 282 ~~-i~~l~~~~~~~~~-v~~~~r~~~---l~----~~~~~------l~~l~~---~~~g~iIf~~s~~~ie~la~~L~-~ 342 (677)
T 3rc3_A 282 DL-VMELMYTTGEEVE-VRDYKRLTP---IS----VLDHA------LESLDN---LRPGDCIVCFSKNDIYSVSRQIE-I 342 (677)
T ss_dssp HH-HHHHHHHHTCCEE-EEECCCSSC---EE----ECSSC------CCSGGG---CCTTEEEECSSHHHHHHHHHHHH-H
T ss_pred HH-HHHHHHhcCCceE-EEEeeecch---HH----HHHHH------HHHHHh---cCCCCEEEEcCHHHHHHHHHHHH-h
Confidence 43 5555554433333 222111111 00 00000 001111 13456899999999999999998 6
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEeccccccCCCCCCcEEEEecC--------------CCCHhHHHH
Q 012059 344 TGMKALSIHGEKPMKERREIMRSFLV--GEVPVIVATGILGRGVELLGVRQVIIFDM--------------PNSIKEYVH 407 (472)
Q Consensus 344 ~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~~~~VI~~~~--------------p~s~~~~~Q 407 (472)
.++.+..+||+|++++|..+++.|++ |.++|||||+++++|||+ ++++||+++. |.+..+|.|
T Consensus 343 ~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~Q 421 (677)
T 3rc3_A 343 RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421 (677)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHH
T ss_pred cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHH
Confidence 78999999999999999999999999 889999999999999999 8999999998 779999999
Q ss_pred hhcccccCCCc---ceEEEEEcC
Q 012059 408 QIGRASQMGDE---GTAIVFVNE 427 (472)
Q Consensus 408 r~GR~~R~g~~---g~~~~~~~~ 427 (472)
|+|||||.|.. |.|+.++..
T Consensus 422 R~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 422 IAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp HHTTBTCTTSSCSSEEEEESSTT
T ss_pred HhcCCCCCCCCCCCEEEEEEecc
Confidence 99999999964 666655443
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.2e-34 Score=257.38 Aligned_cols=203 Identities=34% Similarity=0.579 Sum_probs=183.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEE
Q 012059 75 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 154 (472)
Q Consensus 75 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~li 154 (472)
+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.... ....++++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ----ERGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC----CTTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc----ccCCCCcEEE
Confidence 689999999999999999999999999999999999999999999999999999999998875311 1245678999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 012059 155 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 234 (472)
Q Consensus 155 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~ 234 (472)
++|+++|+.|+++.++.+... +++..++|+.....+...+..+++|+|+||+++.+++......+.++++||+||||+
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred EECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 999999999999999999765 678888898887777777778899999999999999988878889999999999999
Q ss_pred hhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEe
Q 012059 235 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSV 283 (472)
Q Consensus 235 ~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~ 283 (472)
+.+.++...+..++..+ +..+++++|||+++.+..+.+.++.++..+.+
T Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999888 47889999999999999999999999987764
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=274.89 Aligned_cols=213 Identities=32% Similarity=0.542 Sum_probs=183.0
Q ss_pred ceeeCCCCCCc---ccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC--CcEEEEccCCCCcchhhHHHHHHHH
Q 012059 62 INVKGDAVPAP---ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 62 ~~~~~~~~p~~---~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
+.+.+...+.| ..+|+++++++.+++.|..+||..|+++|.++|+.++.+ +|++++||||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 44555555444 578999999999999999999999999999999999987 9999999999999999999999886
Q ss_pred hhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHH
Q 012059 137 ANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM 215 (472)
Q Consensus 137 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~ 215 (472)
.. ...++++||++||++||.|+++.++.++... ++.+...+|+....... ..+++|+|+||++|.+++.
T Consensus 157 ~~-------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~ 226 (300)
T 3fmo_B 157 EP-------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCS 226 (300)
T ss_dssp CT-------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHT
T ss_pred hc-------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHH
Confidence 43 2346789999999999999999999998764 57777888776543321 3568999999999999997
Q ss_pred c-CCCCCCCeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEEeC
Q 012059 216 K-HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVG 284 (472)
Q Consensus 216 ~-~~~~~~~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 284 (472)
+ ....+.++++||+||||++++ .+|...+..++..+ +..|+++||||+++.+..+++.++.++..+.+.
T Consensus 227 ~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred hcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 6 556788999999999999998 68888888888887 568999999999999999999999999988764
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=302.56 Aligned_cols=382 Identities=14% Similarity=0.169 Sum_probs=261.0
Q ss_pred CCCCCCccccCccccCCCc-ccccCCCHHHHHHHHHhcCceee---CCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCH
Q 012059 24 PERLPATDECFYVRESDEN-SGFQSLTIGQTDSLRKRLEINVK---GDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTP 99 (472)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~ 99 (472)
...+.+|....|....++. ..+..+..+.++.+......... ....+.....|..+...+... .-..++|
T Consensus 166 ~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~ 239 (800)
T 3mwy_W 166 LQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRD 239 (800)
T ss_dssp CBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCT
T ss_pred eEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCH
Confidence 4567778888888888764 33445677788888776432211 111122222344332222111 1237999
Q ss_pred HHHHHHhhHh----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 100 VQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 100 ~Q~~~i~~~~----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
||.+++..++ .+++.|+..+||+|||+.++..+...+... .....+||||| ..|+.||.+++.+++..
T Consensus 240 yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-------~~~~~~LIV~P-~sll~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 240 FQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-------RQNGPHIIVVP-LSTMPAWLDTFEKWAPD 311 (800)
T ss_dssp HHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-------SCCSCEEEECC-TTTHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-------CCCCCEEEEEC-chHHHHHHHHHHHHCCC
Confidence 9999998766 889999999999999998655554333221 23456999999 67889999999999743
Q ss_pred CCCeEEEEEcCcchHHHHHHH------------hcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHH
Q 012059 176 LPFKTALVVGGDAMARQVYRI------------QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQ 243 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~------------~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~ 243 (472)
+.+.+++|+.......... ...++|+|+|++.+...... +....+++||+||||++.+. ...
T Consensus 312 --~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~s~ 385 (800)
T 3mwy_W 312 --LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--ESS 385 (800)
T ss_dssp --CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--SSH
T ss_pred --ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--hhH
Confidence 5666666665544443332 12478999999999764332 11236889999999999654 345
Q ss_pred HHHHHHhCCCCceEeeccccc----HHHHHHHhhhcCCc-----------------------------EEEEeCCC----
Q 012059 244 VMQIFRAISLPQILMYSATIS----QEVEKMSSSISKDI-----------------------------VVVSVGKP---- 286 (472)
Q Consensus 244 ~~~i~~~~~~~~~i~~SAT~~----~~~~~~~~~~~~~~-----------------------------~~i~~~~~---- 286 (472)
....+..+.....+++|||+- .++..+...+.... ..+.-...
T Consensus 386 ~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~ 465 (800)
T 3mwy_W 386 LYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEK 465 (800)
T ss_dssp HHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTT
T ss_pred HHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhh
Confidence 566677778888999999972 22222222111110 00000000
Q ss_pred CCCccceeEEEEEe------------------------------------------------------------------
Q 012059 287 NMPNKAVKQLAIWV------------------------------------------------------------------ 300 (472)
Q Consensus 287 ~~~~~~~~~~~~~~------------------------------------------------------------------ 300 (472)
..+. .......+
T Consensus 466 ~LP~--k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~ 543 (800)
T 3mwy_W 466 SLPS--KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMT 543 (800)
T ss_dssp TSCC--EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CC
T ss_pred ccCC--cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccccc
Confidence 0000 00011111
Q ss_pred ---------cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 012059 301 ---------ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE 371 (472)
Q Consensus 301 ---------~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 371 (472)
..+.|...+..++......+.++||||.....++.++..|. ..|+.+..+||+++..+|..+++.|+++.
T Consensus 544 ~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~-~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 544 RENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS-IKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH-HHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred HHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 11335556667777766778899999999999999999998 67999999999999999999999999865
Q ss_pred C---cEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcce--EEEEEcCC
Q 012059 372 V---PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT--AIVFVNEE 428 (472)
Q Consensus 372 ~---~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 428 (472)
. .+|++|.++++|||++.+++||+||+|+|+..+.||+||++|.|+... ++.|+...
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 4 489999999999999999999999999999999999999999998654 45555555
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1e-33 Score=280.89 Aligned_cols=333 Identities=19% Similarity=0.200 Sum_probs=246.9
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
..|+ .|+++|..+.-.+..|+ |..+.||+|||+++.+|++-..+. |..+.|++|+..||.|-++++.
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~----------G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI----------GKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT----------SSCEEEEESSHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc----------CCceEEEeccHHHHHhHHHHHH
Confidence 3566 78999999988888876 999999999999999999866544 5669999999999999999999
Q ss_pred HHhcCCCCeEEEEEcC--------------------------------------------------cchHHHHHHHhcCC
Q 012059 171 LLGKGLPFKTALVVGG--------------------------------------------------DAMARQVYRIQQGV 200 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g--------------------------------------------------~~~~~~~~~~~~~~ 200 (472)
.+...+|+++.+++.. ....+ +.-.-.|
T Consensus 138 ~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~ 215 (822)
T 3jux_A 138 PVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLC 215 (822)
T ss_dssp HHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHS
T ss_pred HHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcC
Confidence 9999999999999882 11111 1111238
Q ss_pred CEEEeChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhhcC----------------cHH---------------
Q 012059 201 ELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQRG----------------FRD--------------- 242 (472)
Q Consensus 201 ~I~i~Tp~~l-~~~~~~~------~~~~~~~~~iVvDE~h~~~~~~----------------~~~--------------- 242 (472)
||+++|...| .+++..+ ......+.+.||||+|.++-.. ...
T Consensus 216 DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy 295 (822)
T 3jux_A 216 DVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDF 295 (822)
T ss_dssp SEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTE
T ss_pred CCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcE
Confidence 9999999887 4555432 2224568899999999865100 000
Q ss_pred -----------------HHHHHH---------------------Hh---C------------------------------
Q 012059 243 -----------------QVMQIF---------------------RA---I------------------------------ 251 (472)
Q Consensus 243 -----------------~~~~i~---------------------~~---~------------------------------ 251 (472)
.++..+ +. +
T Consensus 296 ~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s 375 (822)
T 3jux_A 296 TVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYS 375 (822)
T ss_dssp EECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCG
T ss_pred EEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCc
Confidence 011110 00 0
Q ss_pred --------------------------------CCCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeE-EEE
Q 012059 252 --------------------------------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQ-LAI 298 (472)
Q Consensus 252 --------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~ 298 (472)
.-.++.+||||.......+.+.+..+.+.+.. ..+.....+ ...
T Consensus 376 ~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPt---nkp~~R~d~~d~v 452 (822)
T 3jux_A 376 GGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPT---HKPMIRKDHDDLV 452 (822)
T ss_dssp GGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCC---SSCCCCEECCCEE
T ss_pred hHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECC---CCCcceeecCcEE
Confidence 01168899999988777787777666444322 222222222 245
Q ss_pred EecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 012059 299 WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 378 (472)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 378 (472)
+.....|...+...+......+.|+||||+|+..++.++..|. ..|+.+..+||+..+.++..+...++.| .|+|||
T Consensus 453 y~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~-~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVAT 529 (822)
T 3jux_A 453 FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLK-KKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIAT 529 (822)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHH-TTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEE
T ss_pred EecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHH-HCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEc
Confidence 5667788888888887755556789999999999999999998 7899999999996666666666666666 599999
Q ss_pred ccccccCCCC--------CCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHH----HHHHHHHHHcC
Q 012059 379 GILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF----QELVDILKSSG 444 (472)
Q Consensus 379 ~~~~~Gidi~--------~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~ 444 (472)
++++||+||+ +..+||+++.|.|...|.||+||+||.|.+|.+++|++..|..+. ..+...++..+
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 9999999998 566999999999999999999999999999999999999884332 34455555543
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-34 Score=259.35 Aligned_cols=211 Identities=31% Similarity=0.511 Sum_probs=179.3
Q ss_pred eCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhccc
Q 012059 65 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 144 (472)
Q Consensus 65 ~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~ 144 (472)
.+...+....+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++|++|++..+..
T Consensus 5 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------ 78 (220)
T 1t6n_A 5 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------ 78 (220)
T ss_dssp ---------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------
T ss_pred CCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------
Confidence 34445555677999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcchHHHHHHHhc-CCCEEEeChHHHHHHHHcCCCCCC
Q 012059 145 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELD 222 (472)
Q Consensus 145 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~ 222 (472)
...+.++||++|+++|+.|+++.++++.... ++++..++|+.....+...+.. .++|+|+||+++.+++......+.
T Consensus 79 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 79 -VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp -CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred -cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 1235689999999999999999999998766 6888888888887776666654 479999999999999988877889
Q ss_pred CeeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCcEEEE
Q 012059 223 DIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVS 282 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~ 282 (472)
+++++|+||||++.+ .++...+..++..+ +..+++++|||+++.+..+++.++.++..+.
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999999987 47788888888887 4789999999999999999999999988764
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=264.43 Aligned_cols=202 Identities=30% Similarity=0.522 Sum_probs=177.6
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCce
Q 012059 74 LSFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 151 (472)
Q Consensus 74 ~~~~~~~--l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 151 (472)
.+|++++ +++.+++.+...||..|+++|.++++.++.++++++++|||||||++|++|++..+...... ...+.+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~~ 128 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM---PRNGTG 128 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC---GGGCCC
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc---ccCCce
Confidence 4566666 99999999999999999999999999999999999999999999999999999988653211 124677
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcC-CCCCCCeeEEEEe
Q 012059 152 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLD 230 (472)
Q Consensus 152 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~-~~~~~~~~~iVvD 230 (472)
+||++||++|+.|+++.+++++...+..+..++|+.....+...+..+++|+|+||+++.+.+... ...+.++++||+|
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 999999999999999999999988888999999999988888888888999999999999888765 3678899999999
Q ss_pred ccchhhhcCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhhcCCc
Q 012059 231 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDI 278 (472)
Q Consensus 231 E~h~~~~~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~ 278 (472)
|||++.+++|...+..++..+ ...|+++||||+++.+..+++.++.++
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999998 568999999999999999998887643
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-32 Score=282.50 Aligned_cols=321 Identities=13% Similarity=0.161 Sum_probs=218.3
Q ss_pred CCCHHHHHHHhhHh---------cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHH
Q 012059 96 MPTPVQMQAIPSAL---------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 166 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~---------~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 166 (472)
.++|||.+++..+. .+++.|+..+||+|||+.++..+...+.... .......++|||+|+ .|+.||.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~---~~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP---DCKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT---TSSCSCSCEEEEECH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc---cccCCCCcEEEEecH-HHHHHHH
Confidence 68999999999874 4567999999999999986665554432211 011234569999996 7889999
Q ss_pred HHHHHHhcCCCCeEEEEEcCcchHH--HHHHHhc------CCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 012059 167 EQAKLLGKGLPFKTALVVGGDAMAR--QVYRIQQ------GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~------~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~ 238 (472)
+++.++... .+.++.+++|..... ....... ..+|+|+||+.+.... ..+....+++||+||||++.+.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCCh
Confidence 999999754 456666766654321 1122221 3789999999987653 2333457889999999999654
Q ss_pred CcHHHHHHHHHhCCCCceEeecccccHH-HH------------------HHHhhhc------------------------
Q 012059 239 GFRDQVMQIFRAISLPQILMYSATISQE-VE------------------KMSSSIS------------------------ 275 (472)
Q Consensus 239 ~~~~~~~~i~~~~~~~~~i~~SAT~~~~-~~------------------~~~~~~~------------------------ 275 (472)
. ......+..+.....+++|||+-.. +. .+.+.+.
T Consensus 208 ~--~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 208 D--NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp C--HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred h--hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 3 4445556667888999999996210 00 0000000
Q ss_pred -----CCcEEEEeCCC----CCCccceeEEEEEec---------------------------------------------
Q 012059 276 -----KDIVVVSVGKP----NMPNKAVKQLAIWVE--------------------------------------------- 301 (472)
Q Consensus 276 -----~~~~~i~~~~~----~~~~~~~~~~~~~~~--------------------------------------------- 301 (472)
-.+..+.-... ..+. .......+.
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~--k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPV--KIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCC--EEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCC--ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 00000000000 0000 001111111
Q ss_pred ---------------------------------chhHHHHHHHHHHhcC-CCCCCEEEEECCchhHHHHHHHHhhhcCCe
Q 012059 302 ---------------------------------SNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMK 347 (472)
Q Consensus 302 ---------------------------------~~~~~~~l~~~l~~~~-~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~ 347 (472)
.+.|...+..++.... ..+.++|||+++...++.++..|. ..++.
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~-~~g~~ 442 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR-NRRYL 442 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH-HHTCC
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH-HCCCC
Confidence 0112222222222221 235689999999999999999998 77999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCc---EEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcce--EE
Q 012059 348 ALSIHGEKPMKERREIMRSFLVGEVP---VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT--AI 422 (472)
Q Consensus 348 ~~~~~~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~--~~ 422 (472)
+..+||+++..+|.++++.|++|... +|++|.++++|+|++++++||+||+|+++..+.|++||++|.|+... ++
T Consensus 443 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 443 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 99999999999999999999998654 88999999999999999999999999999999999999999998754 44
Q ss_pred EEEcCC
Q 012059 423 VFVNEE 428 (472)
Q Consensus 423 ~~~~~~ 428 (472)
.|+...
T Consensus 523 ~lv~~~ 528 (644)
T 1z3i_X 523 RLLSTG 528 (644)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 555555
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.2e-32 Score=292.59 Aligned_cols=312 Identities=13% Similarity=0.120 Sum_probs=211.6
Q ss_pred CCCHHHHHHHhhHhc--------------CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 96 MPTPVQMQAIPSALS--------------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~--------------~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. .+...++|||+|+++|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-------~~~~~rvLvlvpr~eL 342 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-------LDFIDKVFFVVDRKDL 342 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-------CTTCCEEEEEECGGGC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-------cCCCceEEEEeCcHHH
Confidence 599999999999874 368999999999999986 566544322 1234689999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcCC--CCCCCeeEEEEeccchhhhc
Q 012059 162 CIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR 238 (472)
Q Consensus 162 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~~--~~~~~~~~iVvDE~h~~~~~ 238 (472)
+.|+.+.+..+... .+.++.+.......+. .+.+|+|+||++|...+.... ..+....+||+||||++...
T Consensus 343 ~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 343 DYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp CHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 99999999887643 1224444445445554 468999999999999876532 23557889999999997632
Q ss_pred CcHHHHHHHHHhCCCCceEeecccccHHHH----HHHhhhcCCcEE-----------------EEeCCCCCCc-------
Q 012059 239 GFRDQVMQIFRAISLPQILMYSATISQEVE----KMSSSISKDIVV-----------------VSVGKPNMPN------- 290 (472)
Q Consensus 239 ~~~~~~~~i~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~~~~-----------------i~~~~~~~~~------- 290 (472)
.....+...+++.++++||||+..... .....++.+++. +.........
T Consensus 417 ---~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 417 ---EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp ---HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred ---HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 345667788888999999999864211 011111222221 1111000000
Q ss_pred c-----ceeEEEEEecchhHHHHHHHHHHh----cC------CCCCCEEEEECCchhHHHHHHHHhhhc-----------
Q 012059 291 K-----AVKQLAIWVESNKKKQKLFDILMS----KQ------HFTPPAVVYVGSRLGADLLSNAISVTT----------- 344 (472)
Q Consensus 291 ~-----~~~~~~~~~~~~~~~~~l~~~l~~----~~------~~~~~~lIf~~~~~~~~~l~~~L~~~~----------- 344 (472)
. .+.+.. ......+...+...+.. .. ..+.+++|||+++..|..++..|.+..
T Consensus 494 d~~~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 494 DEKKLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CHHHHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred cHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 0 000000 00111222333332221 11 123579999999999999999997432
Q ss_pred CCeE-EEEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcE
Q 012059 345 GMKA-LSIHGE----------K----------PM-----------------------------KERREIMRSFLVGEVPV 374 (472)
Q Consensus 345 ~~~~-~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~v 374 (472)
+.++ ..+||+ + ++ ..|..+++.|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 1444 445542 2 22 14788999999999999
Q ss_pred EEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCc----ceEEEEEc
Q 012059 375 IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE----GTAIVFVN 426 (472)
Q Consensus 375 LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~----g~~~~~~~ 426 (472)
||+|+++.+|+|+|.+ +++++|.|.+...|+||+||++|.+.. |.++.|..
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 788899999999999999999998753 66666654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=5.4e-29 Score=251.64 Aligned_cols=319 Identities=20% Similarity=0.211 Sum_probs=236.8
Q ss_pred HCCCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 91 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 91 ~~g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
..|+ .|+++|..+++.+++|+ +..+.||+|||++|.+|++...+. +..++|++||++||.|.++++.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~----------G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT----------GKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT----------CSCCEEEESSHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHH
Confidence 4799 99999999999999998 999999999999999999755432 4569999999999999999999
Q ss_pred HHhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHH-HHHHHcCC------CCCC---CeeEEEEeccchhhh-cC
Q 012059 171 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELD---DIRMFVLDEVDCMLQ-RG 239 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l-~~~~~~~~------~~~~---~~~~iVvDE~h~~~~-~~ 239 (472)
.++..+++++.+++||..... .....+++|+|+||+.| .+++..+. ..+. .+.++|+||+|.++. .+
T Consensus 142 ~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea 219 (997)
T 2ipc_A 142 PVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA 219 (997)
T ss_dssp HHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST
T ss_pred HHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCC
Confidence 999999999999999987433 44445799999999999 78887652 4567 899999999999872 11
Q ss_pred ---------------cHHHHHHHHHhCCC---------------------------------------------------
Q 012059 240 ---------------FRDQVMQIFRAISL--------------------------------------------------- 253 (472)
Q Consensus 240 ---------------~~~~~~~i~~~~~~--------------------------------------------------- 253 (472)
....+..+...++.
T Consensus 220 rtPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~ 299 (997)
T 2ipc_A 220 RTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENME 299 (997)
T ss_dssp TSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHH
T ss_pred CCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHH
Confidence 11122222222210
Q ss_pred -------------------------------------------------------------------------------C
Q 012059 254 -------------------------------------------------------------------------------P 254 (472)
Q Consensus 254 -------------------------------------------------------------------------------~ 254 (472)
.
T Consensus 300 l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~ 379 (997)
T 2ipc_A 300 LAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYE 379 (997)
T ss_dssp HHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhCh
Confidence 1
Q ss_pred ceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccce-eEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhH
Q 012059 255 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGA 333 (472)
Q Consensus 255 ~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~ 333 (472)
++.+||+|...+..++.+.+..+.+.+.... +.... ..-.++.....+...+...+.+....+.|+||+|.|.+..
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~Vv~IPTn~---p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~S 456 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMDVVVVPTNR---PVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKS 456 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCCEEECCCSS---CCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHH
T ss_pred HheecCCCchHHHHHHHHHhCCCEEEcCCCC---CcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHH
Confidence 4667777776666666666655544332211 11111 2223445566778888888877777788999999999999
Q ss_pred HHHHHHHhh-----------------------------------------------------------------------
Q 012059 334 DLLSNAISV----------------------------------------------------------------------- 342 (472)
Q Consensus 334 ~~l~~~L~~----------------------------------------------------------------------- 342 (472)
+.++..|..
T Consensus 457 E~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 536 (997)
T 2ipc_A 457 ERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHT 536 (997)
T ss_dssp HHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhh
Confidence 999999981
Q ss_pred ----hcCCeEEEEcCCCCHHHHHHHHHHHhcCC-CcEEEEeccccccCCCCCC-------------------c-------
Q 012059 343 ----TTGMKALSIHGEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELLGV-------------------R------- 391 (472)
Q Consensus 343 ----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~~-------------------~------- 391 (472)
..|++..++++.....+- +++. ++|. -.|.|||++++||.||.-- .
T Consensus 537 ~~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~ 613 (997)
T 2ipc_A 537 LAVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFI 613 (997)
T ss_dssp HHHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHH
T ss_pred hHHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccc
Confidence 345555666665443332 2222 2453 4489999999999998522 1
Q ss_pred ------------------------------------------------EEEEecCCCCHhHHHHhhcccccCCCcceEEE
Q 012059 392 ------------------------------------------------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 423 (472)
Q Consensus 392 ------------------------------------------------~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 423 (472)
+||--..+.|...-.|-.||+||.|.+|.+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF 693 (997)
T 2ipc_A 614 KKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRF 693 (997)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEE
T ss_pred ccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEE
Confidence 78888889999999999999999999999999
Q ss_pred EEcCCCh
Q 012059 424 FVNEENK 430 (472)
Q Consensus 424 ~~~~~~~ 430 (472)
|++-+|.
T Consensus 694 ~LSLeDd 700 (997)
T 2ipc_A 694 YVSFDDD 700 (997)
T ss_dssp EEESSSH
T ss_pred EEECChH
Confidence 9988774
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=6.5e-30 Score=222.18 Aligned_cols=181 Identities=25% Similarity=0.463 Sum_probs=148.5
Q ss_pred hhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEE
Q 012059 272 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 351 (472)
Q Consensus 272 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~ 351 (472)
..++.+|..+.++........+.+.+..+....|...|.+++... ++++||||+++..++.++..|. ..++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~-~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLL-LKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHH-HHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHH-HcCCcEEEE
Confidence 345677878877777777778999999999888998888888653 4589999999999999999998 679999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC-Ch
Q 012059 352 HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NK 430 (472)
Q Consensus 352 ~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~ 430 (472)
||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 78
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHhchh
Q 012059 431 NLFQELVDILKSSGAGIPRELINSRY 456 (472)
Q Consensus 431 ~~~~~l~~~l~~~~~~~~~~l~~~~~ 456 (472)
..+..+.+.++..++.+|+.|.++..
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 89999999999999999999887754
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=4.9e-29 Score=215.76 Aligned_cols=168 Identities=35% Similarity=0.645 Sum_probs=141.9
Q ss_pred CCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHH
Q 012059 287 NMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRS 366 (472)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~ 366 (472)
.....++.+.+..+....|...|.+++.... .+.++||||+++..++.++..|. ..++.+..+||++++.+|..+++.
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~-~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLY-HEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHH-HTTCCEEEEC--------CHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHH-HcCCceEEEeCCCCHHHHHHHHHH
Confidence 3445678999999999999999999887743 46789999999999999999998 679999999999999999999999
Q ss_pred HhcCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCC
Q 012059 367 FLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAG 446 (472)
Q Consensus 367 f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 446 (472)
|++|+++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+...+++
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhchh
Q 012059 447 IPRELINSRY 456 (472)
Q Consensus 447 ~~~~l~~~~~ 456 (472)
+|.++.+++.
T Consensus 172 ~~~~l~~~a~ 181 (185)
T 2jgn_A 172 VPSWLENMAY 181 (185)
T ss_dssp CCHHHHHHHC
T ss_pred CCHHHHHHHH
Confidence 9999988764
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=8.1e-28 Score=247.49 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=134.8
Q ss_pred CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh
Q 012059 253 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 253 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~ 332 (472)
..+++++|||++....... ................ .........+...++..+......+.++||||+++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAHS----GRVVEQIIRPTGLLDP----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHHC----SEEEEECSCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHhh----hCeeeeeeccCCCCCC----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 5688999999986442221 1111111111111111 1112233445566666666554456789999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC-----CCCHhHHHH
Q 012059 333 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 407 (472)
Q Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~-----p~s~~~~~Q 407 (472)
++.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+..+|+|
T Consensus 452 ae~L~~~L~-~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 452 AEELTSFLV-EHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHH-HTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHH-hcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999998 77999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hhcccccCCCcceEEEEEcCCChHHHHHHHH
Q 012059 408 QIGRASQMGDEGTAIVFVNEENKNLFQELVD 438 (472)
Q Consensus 408 r~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 438 (472)
|+||+||.+ .|.+++|+++.+......+.+
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999985 799999999887655444443
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.8e-26 Score=237.38 Aligned_cols=175 Identities=20% Similarity=0.274 Sum_probs=135.3
Q ss_pred CCceEeecccccHHHHHHHhhhcCCcEEEEeCCCCCCccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchh
Q 012059 253 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 332 (472)
Q Consensus 253 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~ 332 (472)
..|++++|||++....... ................ . +.......+...++..+......+.++||||+++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p-~---i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP-L---IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC-E---EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC-e---EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 5788999999986443221 1222211111111111 1 122233445566666666655556789999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCcEEEEecC-----CCCHhHHHH
Q 012059 333 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 407 (472)
Q Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~-----p~s~~~~~Q 407 (472)
++.++..|. ..|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+..+|+|
T Consensus 458 ae~L~~~L~-~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 458 SEDLTDYLK-EIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHH-HTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHH-hcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999998 67999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred hhcccccCCCcceEEEEEcCCChHHHHHHH
Q 012059 408 QIGRASQMGDEGTAIVFVNEENKNLFQELV 437 (472)
Q Consensus 408 r~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 437 (472)
|+||+||. ..|.|++|+++.+......+.
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999998 689999999988765544433
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=4.4e-27 Score=199.63 Aligned_cols=151 Identities=25% Similarity=0.477 Sum_probs=139.1
Q ss_pred CccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHh
Q 012059 289 PNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL 368 (472)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~ 368 (472)
...++.+.+..+....|...|..++... ..+++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELD-DLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3455888888898889999999988764 34689999999999999999998 67999999999999999999999999
Q ss_pred cCCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHH
Q 012059 369 VGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 442 (472)
Q Consensus 369 ~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 442 (472)
+|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+.+.+...+..+.+.+..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877643
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-27 Score=203.50 Aligned_cols=158 Identities=28% Similarity=0.512 Sum_probs=139.0
Q ss_pred ceeEEEEEecchh-HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 012059 292 AVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG 370 (472)
Q Consensus 292 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 370 (472)
.+.+.+..+.... |...|..++... ..+++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLR-NDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4677787787776 888888888764 45689999999999999999998 6789999999999999999999999999
Q ss_pred CCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCCCCCHH
Q 012059 371 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRE 450 (472)
Q Consensus 371 ~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 450 (472)
+.+|||||+++++|+|+|++++||+||.|++..+|.||+||+||.|+.|.+++|+++.+...+..+.++++...+++|..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887777765
Q ss_pred HH
Q 012059 451 LI 452 (472)
Q Consensus 451 l~ 452 (472)
+.
T Consensus 160 ~~ 161 (165)
T 1fuk_A 160 IA 161 (165)
T ss_dssp CT
T ss_pred HH
Confidence 44
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.6e-27 Score=203.88 Aligned_cols=161 Identities=27% Similarity=0.452 Sum_probs=141.8
Q ss_pred ccceeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 012059 290 NKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV 369 (472)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 369 (472)
...+.+.+..+....|...|..++... ..+++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLV-EQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 345788888888889999999988765 34689999999999999999998 679999999999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCC-ChHHHHHHHHHHHHcCCCCC
Q 012059 370 GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSSGAGIP 448 (472)
Q Consensus 370 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~ 448 (472)
|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+.....++|
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 99999999999999999999999999999999999999999999999999999999876 56778888888877777778
Q ss_pred HHHHh
Q 012059 449 RELIN 453 (472)
Q Consensus 449 ~~l~~ 453 (472)
.++..
T Consensus 160 ~~~~~ 164 (172)
T 1t5i_A 160 DEIDI 164 (172)
T ss_dssp -----
T ss_pred hhhch
Confidence 77544
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.3e-27 Score=200.17 Aligned_cols=157 Identities=25% Similarity=0.424 Sum_probs=135.7
Q ss_pred CccceeEEEEEecchh-HHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHH
Q 012059 289 PNKAVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF 367 (472)
Q Consensus 289 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f 367 (472)
....+.+.+..+.... |...|..++... ..+++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMI-QDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHH-TTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 3456888888888765 777887777553 35689999999999999999998 6799999999999999999999999
Q ss_pred hcCCCcEEEEeccccccCCCCCCcEEEEecCC------CCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHH
Q 012059 368 LVGEVPVIVATGILGRGVELLGVRQVIIFDMP------NSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 441 (472)
Q Consensus 368 ~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 441 (472)
++|+.+|||||+++++|+|+|++++||+||.| .+..+|+||+||+||.|+.|.+++|+.+.+...+..+.+.+.
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 899999999999999999999999999999888888887776
Q ss_pred HcCCCCC
Q 012059 442 SSGAGIP 448 (472)
Q Consensus 442 ~~~~~~~ 448 (472)
....++|
T Consensus 161 ~~~~~~~ 167 (175)
T 2rb4_A 161 SSIKQLN 167 (175)
T ss_dssp CCCEEEC
T ss_pred CcccccC
Confidence 5544433
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=8.4e-26 Score=200.03 Aligned_cols=150 Identities=21% Similarity=0.389 Sum_probs=134.0
Q ss_pred eeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 012059 293 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 372 (472)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 372 (472)
+.+....+....|...+..++.... ++++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLL-RLGHPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHC--CSCEEEECSSHHHHHHHHHHHH-HHTCCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 3455566777788888888887543 5689999999999999999998 679999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCC
Q 012059 373 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGA 445 (472)
Q Consensus 373 ~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 445 (472)
+|||||+++++|+|+|++++||+||.|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.++....
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~ 155 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 155 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCE
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCe
Confidence 9999999999999999999999999999999999999999999999999999999999888888888765443
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=3.3e-25 Score=205.20 Aligned_cols=149 Identities=23% Similarity=0.401 Sum_probs=132.7
Q ss_pred eeEEEEEecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 012059 293 VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 372 (472)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 372 (472)
+.+.+..+....|...+..++.... ++++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++|+.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~-~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLL-RLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHH-TTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 5677788888889999998887654 5789999999999999999998 679999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcC
Q 012059 373 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 444 (472)
Q Consensus 373 ~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 444 (472)
+|||||+++++|+|+|++++||+||.|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.+....
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999999999999888888887776543
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=4.2e-25 Score=197.13 Aligned_cols=165 Identities=21% Similarity=0.279 Sum_probs=121.5
Q ss_pred CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHH-HHHHHHH
Q 012059 93 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ-VEEQAKL 171 (472)
Q Consensus 93 g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~ 171 (472)
....|+++|.++++.+++++++++.+|||+|||++++++++..+..... ...+.++||++|+++|+.| +.+.+..
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH----TTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc----ccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999999999999877654321 1246789999999999999 8888888
Q ss_pred HhcCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCC------CCCCCeeEEEEeccchhhhcCcHHHHH
Q 012059 172 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD------IELDDIRMFVLDEVDCMLQRGFRDQVM 245 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~------~~~~~~~~iVvDE~h~~~~~~~~~~~~ 245 (472)
+... ++.+..+.|+............+++|+|+||+.+...+.... ..+.++++||+||||++.+.++...+.
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 8764 577777777765444444444568999999999999887643 457889999999999998766555443
Q ss_pred -HHHHhC--------------CCCceEeeccc
Q 012059 246 -QIFRAI--------------SLPQILMYSAT 262 (472)
Q Consensus 246 -~i~~~~--------------~~~~~i~~SAT 262 (472)
.++... +.++++++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332222 67899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=2.2e-26 Score=196.68 Aligned_cols=149 Identities=28% Similarity=0.450 Sum_probs=131.6
Q ss_pred eeEEEEEecc-hhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 012059 293 VKQLAIWVES-NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE 371 (472)
Q Consensus 293 ~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 371 (472)
+.+.+..+.. ..|...|..++.. ..++++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLR-EAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 4555666665 6677777777754 235689999999999999999998 67899999999999999999999999999
Q ss_pred CcEEEEeccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcC
Q 012059 372 VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 444 (472)
Q Consensus 372 ~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 444 (472)
.+|||||+++++|+|+|++++||++|.|++...|+||+||+||.|+.|.+++++.+.+...+..+.+.+....
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999888888887765543
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=4.3e-24 Score=215.59 Aligned_cols=127 Identities=23% Similarity=0.249 Sum_probs=87.2
Q ss_pred CCCCCCCHHHHHHHhhH----hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHH
Q 012059 92 AGYDMPTPVQMQAIPSA----LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 167 (472)
Q Consensus 92 ~g~~~~~~~Q~~~i~~~----~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 167 (472)
.|| .|+|+|.+++..+ ..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------------TCEEEEEESCHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------------CCcEEEEcCCHHHHHHHHH
Confidence 367 8999999987654 488999999999999999999998753 4679999999999999998
Q ss_pred HHHHHhcCCCCeEEEEEcCcch--------H------------------------HHH---------------HHHhcCC
Q 012059 168 QAKLLGKGLPFKTALVVGGDAM--------A------------------------RQV---------------YRIQQGV 200 (472)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~g~~~--------~------------------------~~~---------------~~~~~~~ 200 (472)
++..+ ++++..+.|.... . +.+ +....++
T Consensus 70 ~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 70 NAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HHGGG----TCCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 88774 3344443332110 0 000 1112457
Q ss_pred CEEEeChHHHHHHHHcCCC-------CCCCeeEEEEeccchhh
Q 012059 201 ELIVGTPGRLIDLLMKHDI-------ELDDIRMFVLDEVDCML 236 (472)
Q Consensus 201 ~I~i~Tp~~l~~~~~~~~~-------~~~~~~~iVvDE~h~~~ 236 (472)
+|+|+|+..|.+....... .+...+++||||||++.
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999999999875443221 24678899999999984
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=3.8e-21 Score=194.87 Aligned_cols=308 Identities=16% Similarity=0.146 Sum_probs=197.1
Q ss_pred CCCHHHHHHHhhH----hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSA----LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~----~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
+++|+|.+.+..+ ..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-------------~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-------------KPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-------------CSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-------------CCeEEEEcCCHHHHHHHHHHHHH
Confidence 6899999987754 478999999999999999999999862 56799999999999999999999
Q ss_pred HhcCCCCeEEEEEcCcch---------------------------------HHHH------------------HHHhcCC
Q 012059 172 LGKGLPFKTALVVGGDAM---------------------------------ARQV------------------YRIQQGV 200 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g~~~---------------------------------~~~~------------------~~~~~~~ 200 (472)
+....++++..+.|+... .... +....++
T Consensus 70 l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 70 IREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp CCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGC
T ss_pred HhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcC
Confidence 877777888877663221 1111 2234568
Q ss_pred CEEEeChHHHHHHHHcCCCCC-CCeeEEEEeccchhhhcCc---------------------------------------
Q 012059 201 ELIVGTPGRLIDLLMKHDIEL-DDIRMFVLDEVDCMLQRGF--------------------------------------- 240 (472)
Q Consensus 201 ~I~i~Tp~~l~~~~~~~~~~~-~~~~~iVvDE~h~~~~~~~--------------------------------------- 240 (472)
+|+|+|+..|.+...+....+ ....++||||||++.+ ..
T Consensus 150 dIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp SEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred CEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988765543333 4678999999999865 20
Q ss_pred ----------------HHHHH----------------------------HHHH--------------hC-----------
Q 012059 241 ----------------RDQVM----------------------------QIFR--------------AI----------- 251 (472)
Q Consensus 241 ----------------~~~~~----------------------------~i~~--------------~~----------- 251 (472)
...+. ..+. .+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 00000 0000 00
Q ss_pred ----CC-CceEeecccccHHHHHHHhhhcCC-cEE-----EEeCCCCCCccceeEEEEE--ecc------hhHHHHHHHH
Q 012059 252 ----SL-PQILMYSATISQEVEKMSSSISKD-IVV-----VSVGKPNMPNKAVKQLAIW--VES------NKKKQKLFDI 312 (472)
Q Consensus 252 ----~~-~~~i~~SAT~~~~~~~~~~~~~~~-~~~-----i~~~~~~~~~~~~~~~~~~--~~~------~~~~~~l~~~ 312 (472)
.. ..+|++|||+.. +..+.+.+.-+ ... .....+. ..+. ..+.. .+. ......+.+.
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~ 384 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSY-ECYIGVDVTSKYDMRSDNMWKRYADY 384 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEE-EEEEECSCCCCTTTCCHHHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCce-EEEEeCCCCCccccCCHHHHHHHHHH
Confidence 11 467777888765 44444444333 221 0111111 1111 11111 110 1113344444
Q ss_pred HHhc-CCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe--ccccccCCCC-
Q 012059 313 LMSK-QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT--GILGRGVELL- 388 (472)
Q Consensus 313 l~~~-~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gidi~- 388 (472)
+.+. ....+.+|||++|....+.+++. .+..+..-..+++ +...++.|+.+.-.||+|| ..+++|||+|
T Consensus 385 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 385 LLKIYFQAKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHHHHCSSEEEEEESCHHHHHHHHTT----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHHh----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 4432 12345799999999999988862 3444443223444 3557788854445799998 6999999999
Q ss_pred ----CCcEEEEecCCCC--------------------H----------hHHHHhhcccccCCCcceEEEEEcCC
Q 012059 389 ----GVRQVIIFDMPNS--------------------I----------KEYVHQIGRASQMGDEGTAIVFVNEE 428 (472)
Q Consensus 389 ----~~~~VI~~~~p~s--------------------~----------~~~~Qr~GR~~R~g~~g~~~~~~~~~ 428 (472)
.++.||+...|.. . ....|.+||+-|...+--++++++..
T Consensus 458 ~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp TTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 4789998776541 1 12358999999987665555555544
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=183.40 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=128.1
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
...++++|.++++.+.+|+++++.||||||||+++.++++..+.... ...+.++++++|+++|+.|+.+.+....
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-----~~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-----RAAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-----CGGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-----CCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 33578999999999999999999999999999988888887665421 1234589999999999999988776543
Q ss_pred c-CCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchh-hhcCcH-HHHHHHHHh
Q 012059 174 K-GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM-LQRGFR-DQVMQIFRA 250 (472)
Q Consensus 174 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~-~~~~~~-~~~~~i~~~ 250 (472)
. ..+..+.......... ...+++|+|+||+++.+++.. .+.++++||+||||++ .+.++. ..+..++..
T Consensus 134 ~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 134 GEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 2 3333333322221110 013478999999999999876 4788999999999986 666665 466777777
Q ss_pred CCCCceEeecccccHHHHHHHhhhcCCcE
Q 012059 251 ISLPQILMYSATISQEVEKMSSSISKDIV 279 (472)
Q Consensus 251 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 279 (472)
.+..|++++|||++.+. +.+.+...++
T Consensus 206 ~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 206 YPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp CTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred CCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 78899999999999765 6666655543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=6.1e-23 Score=190.65 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=122.9
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|+++|.++++.++.+++.++++|||+|||+++++++...+.. ...++||++|+++|+.||.+.+.++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 8999999999999988899999999999999998877765533 2347999999999999999999999776
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC-CCC
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 254 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~-~~~ 254 (472)
.+..+..+++|..... ....+.+|+|+||+.+.+. ....+.++++||+||||++.+ ..+..++..+ ...
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCC
Confidence 6677788877765432 1124589999999877543 223467899999999999863 4666777777 689
Q ss_pred ceEeecccccHHH
Q 012059 255 QILMYSATISQEV 267 (472)
Q Consensus 255 ~~i~~SAT~~~~~ 267 (472)
+++++|||+++..
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999997643
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=4.2e-20 Score=166.26 Aligned_cols=138 Identities=21% Similarity=0.150 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
..|+++|.++++.++.++++++++|||+|||.+++.++... +.++||++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-------------CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 38999999999999999999999999999999887766531 456999999999999999988874
Q ss_pred CCCCe-EEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCC
Q 012059 175 GLPFK-TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL 253 (472)
Q Consensus 175 ~~~~~-~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~ 253 (472)
++. +..+.|+.. ...+|+|+||+.+....... ...+++||+||||++.+..+. .++..++.
T Consensus 157 --~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~~ 218 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSIA 218 (237)
T ss_dssp --CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCCC
T ss_pred --CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhccC
Confidence 456 555555543 24799999999987665421 245889999999999776543 46667788
Q ss_pred CceEeecccccH
Q 012059 254 PQILMYSATISQ 265 (472)
Q Consensus 254 ~~~i~~SAT~~~ 265 (472)
.+++++|||+..
T Consensus 219 ~~~l~LSATp~r 230 (237)
T 2fz4_A 219 PFRLGLTATFER 230 (237)
T ss_dssp SEEEEEEESCC-
T ss_pred CEEEEEecCCCC
Confidence 899999999875
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.83 E-value=6.4e-19 Score=179.79 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCCHHHHHHHhhH----hcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSA----LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 96 ~~~~~Q~~~i~~~----~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
+|++.|.+.+..+ ..|+++++.||||+|||++|++|++.++.. .+.+++|++||++|+.|+.+++..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------cCCeEEEECCCHHHHHHHHHHHHH
Confidence 5899999998654 489999999999999999999999988754 246899999999999999999999
Q ss_pred HhcCCCCeEEEEEcC
Q 012059 172 LGKGLPFKTALVVGG 186 (472)
Q Consensus 172 ~~~~~~~~~~~~~~g 186 (472)
+....+++++.+.|+
T Consensus 74 l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 74 LSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHSCCCEEECCCH
T ss_pred HhhccCeEEEEEECC
Confidence 876556777666553
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.81 E-value=1e-19 Score=166.43 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=100.0
Q ss_pred cchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEe
Q 012059 301 ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP-VIVAT 378 (472)
Q Consensus 301 ~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLvaT 378 (472)
..+.|...+.+++......+.++||||++...++.++..|....|+.+..+||+++..+|..+++.|++| .++ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567888888888776556779999999999999999999844589999999999999999999999998 777 78999
Q ss_pred ccccccCCCCCCcEEEEecCCCCHhHHHHhhcccccCCCcceE--EEEEcCC
Q 012059 379 GILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE 428 (472)
Q Consensus 379 ~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 428 (472)
+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.|+...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 5556554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.84 E-value=3.7e-09 Score=107.74 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=84.5
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcch--hhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTA--SFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~--~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.++|.++++.++.++.+++.|++|+|||. +++++.+..+. ...+.++++++||..+|.++.+.+......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--------~~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--------DGERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--------hcCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999994 45555554321 124568999999999999998887765543
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCC-EEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCC-C
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVE-LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-L 253 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~-I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~-~ 253 (472)
+++..... .+.... ....+ ++-.+|+.. . +.........++++|||||+.+ + ...+..++..++ .
T Consensus 223 l~l~~~~~-~~~~~~------~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 223 LPLTDEQK-KRIPED------ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDH 289 (608)
T ss_dssp SSCCSCCC-CSCSCC------CBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTT
T ss_pred CCCCHHHH-hccchh------hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCC
Confidence 33211000 000000 00011 111222211 1 1112222337899999999944 3 456677788774 4
Q ss_pred CceEeec
Q 012059 254 PQILMYS 260 (472)
Q Consensus 254 ~~~i~~S 260 (472)
.+++++.
T Consensus 290 ~~liLvG 296 (608)
T 1w36_D 290 ARVIFLG 296 (608)
T ss_dssp CEEEEEE
T ss_pred CEEEEEc
Confidence 5666653
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.32 E-value=2.3e-06 Score=84.44 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHHCCCCCCCHHHHHHHhhHhc-----CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 89 IEAAGYDMPTPVQMQAIPSALS-----GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 89 l~~~g~~~~~~~Q~~~i~~~~~-----~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
.....|..+++-|.+++..++. ...++|.|+.|+|||.+ +..++..+.. .....+++++||...+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~--------~~~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIS--------TGETGIILAAPTHAAKK 88 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHH--------TTCCCEEEEESSHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHh--------cCCceEEEecCcHHHHH
Confidence 3456788999999999997753 24899999999999974 4455555544 12246999999998877
Q ss_pred HHHHHH
Q 012059 164 QVEEQA 169 (472)
Q Consensus 164 q~~~~~ 169 (472)
.+.+.+
T Consensus 89 ~l~~~~ 94 (459)
T 3upu_A 89 ILSKLS 94 (459)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 655433
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.29 E-value=1.5e-06 Score=89.63 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=52.7
Q ss_pred CCCHHHHHHHhhHhcCC-cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~-~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
.+.+-|.+|+..++..+ -.+|.||+|+|||.+.. -++..+.. .+.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~---------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVK---------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHh---------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 57899999999998665 47899999999998643 44444443 3567999999999999888777654
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.29 E-value=3.5e-06 Score=86.33 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++..+.. ..+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT--------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH--------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45789999999999998888999999999999863 344444433 14567999999999999888776653
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.26 E-value=4.2e-06 Score=84.40 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=49.8
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHH
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 168 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 168 (472)
.+++.|.+++..++.++.+++.|++|+|||.+ +..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES---------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh---------cCCeEEEecCcHHHHHHhHhh
Confidence 57899999999999999999999999999975 3334443332 356799999999988766553
No 99
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.25 E-value=3.8e-06 Score=76.86 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=91.1
Q ss_pred ecchhHHHHHHHHHHhcCCCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 012059 300 VESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 379 (472)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 379 (472)
...+.|...|-.++......+.++|||++.....+.+..+|. ..++.+..+.|.....++. -.++...+.+.|.
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~-~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Llts 178 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLL-GNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSS 178 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHT-TSSCEEEESSSCCC------------CCSEEEEEEES
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHh-cCCCceEeCCCCchhhhhh-----cccCCceEEEEEC
Confidence 456788888888888888888899999999999999999998 7899999999986543211 1245566666677
Q ss_pred cccccCC-----CCCCcEEEEecCCCCHhHH-HHhhcccccCC--C--cceEEEEEcCC
Q 012059 380 ILGRGVE-----LLGVRQVIIFDMPNSIKEY-VHQIGRASQMG--D--EGTAIVFVNEE 428 (472)
Q Consensus 380 ~~~~Gid-----i~~~~~VI~~~~p~s~~~~-~Qr~GR~~R~g--~--~g~~~~~~~~~ 428 (472)
..+-|+| +..++.||.||..+++..- +|++-|+.|.| + .-.++-++...
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 7676776 6789999999999999875 99999999874 2 33566666654
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=6.1e-06 Score=86.42 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
+..+++.|.+|+..++.+.-++|.||+|+|||.+. ..++..+... .+.++|+++||...++++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999988778999999999999864 3344444331 2567999999999999988887764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.16 E-value=1e-05 Score=84.60 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=55.4
Q ss_pred CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 94 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 94 ~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
...+++.|.+|+..++.+.-.+|.||+|+|||.+ +..++..+.. ..+.++++++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~--------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLAR--------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHT--------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHH--------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4568999999999999888899999999999986 3444444443 14567999999999999887776553
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.11 E-value=0.00016 Score=74.70 Aligned_cols=71 Identities=24% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+. +++.. ......++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~-~l~~~-----~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIA-WLMSV-----ENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHH-HHHHT-----SCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHH-HHHHh-----CCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999973 467899999999999986444343 33331 11234579999999999999998888764
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.71 E-value=0.00026 Score=67.20 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=55.6
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+...|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS--------SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh--------CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 7899999999876555668999999999998765555443332 34667999999999998888877776543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.30 E-value=0.0011 Score=67.21 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=57.8
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.|+|+|...+..+-..+..++..+-|+|||.+....++..+.. .++..+++++|+...|..+.+.++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--------~~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT--------SSSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh--------CCCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 5899999999877556779999999999998765444444433 23567999999999999988888887765
Q ss_pred CC
Q 012059 176 LP 177 (472)
Q Consensus 176 ~~ 177 (472)
.+
T Consensus 235 ~p 236 (592)
T 3cpe_A 235 LP 236 (592)
T ss_dssp SC
T ss_pred Ch
Confidence 54
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.26 E-value=0.00071 Score=64.97 Aligned_cols=105 Identities=18% Similarity=0.144 Sum_probs=61.5
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 192 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (472)
-.++.|+.|+|||.... - +.. ....+|++||++++..+.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~-~----~~~----------~~~~lVlTpT~~aa~~l~~kl~~~~~~----------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL-S----RVN----------FEEDLILVPGRQAAEMIRRRANASGII----------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH-H----HCC----------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------------
T ss_pred EEEEEcCCCCCHHHHHH-H----Hhc----------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------------
Confidence 37889999999998421 1 111 134799999999998877766432110
Q ss_pred HHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeec
Q 012059 193 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYS 260 (472)
Q Consensus 193 ~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~S 260 (472)
.....-+.|.+.++- ..........+++|||||-.+ +. ..+..++...+..+++++.
T Consensus 211 -----~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~~~vilvG 267 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLCDIAYVYG 267 (446)
T ss_dssp -----CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTCSEEEEEE
T ss_pred -----ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCCCEEEEec
Confidence 011233667665543 112222234789999999854 22 3344445555555555554
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.16 E-value=0.0015 Score=55.07 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=21.9
Q ss_pred CHHHHHHHhhHh---------cCCcEEEEccCCCCcchh
Q 012059 98 TPVQMQAIPSAL---------SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 98 ~~~Q~~~i~~~~---------~~~~~iv~a~TGsGKT~~ 127 (472)
.+.|.+++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 345555554443 478899999999999984
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.96 E-value=0.0014 Score=55.62 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=26.1
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
|+-.++.+|+|+|||+.++ -++..+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~---------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKL---------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHH---------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHH---------CCCeEEEEeecc
Confidence 5567899999999998643 33333322 345688888873
No 108
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.89 E-value=0.001 Score=54.18 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999983
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.69 E-value=0.0024 Score=54.90 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 160 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~ 160 (472)
|+=.++.+++|+|||+.++- .+.++.. .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~-~a~r~~~---------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIR-RVRRTQF---------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHH---------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHH---------CCCEEEEEEeccC
Confidence 34467899999999986444 3333332 4667999998753
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.63 E-value=0.003 Score=53.67 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
|+=.++.+++|+|||+.. +-++.++.. .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~---------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKI---------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH---------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH---------CCCEEEEEEecc
Confidence 445788999999999864 444444332 466799998873
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.63 E-value=0.002 Score=56.25 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=52.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.|.-.++.|++|+|||+.. +-++.++.. .+.+++++.|...- +....+...+++..
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~---------~g~kVli~~~~~d~-----r~~~~i~srlG~~~--------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEY---------ADVKYLVFKPKIDT-----RSIRNIQSRTGTSL--------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHH---------TTCCEEEEEECCCG-----GGCSSCCCCCCCSS---------
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHh---------cCCEEEEEEeccCc-----hHHHHHHHhcCCCc---------
Confidence 3455888999999999864 444444332 35678888775421 00001122222110
Q ss_pred HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 012059 190 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 236 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~ 236 (472)
..+-+.+.+.+...+.... .-..+++||+||++.+.
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233556666666665432 23457899999999753
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.45 E-value=0.0056 Score=53.10 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
.|+=.++.|++|+|||..++-.+... . ..+.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~---------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-Q---------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-H---------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-H---------HCCCeEEEEeecC
Confidence 35557889999999998644443333 2 3467799998865
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.026 Score=51.98 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+.++++.||+|+|||.+. -.++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 4568999999999999863 3444444
No 114
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.42 E-value=0.0069 Score=63.09 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 95 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 95 ~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
..+++-|.+++.. .+.+++|.|+.|||||.+...-+...+... .-....+|+++.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~------~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK------HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT------CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc------CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999976 357899999999999987444443333221 1134579999999999999888877653
No 115
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.40 E-value=0.0043 Score=64.13 Aligned_cols=71 Identities=21% Similarity=0.106 Sum_probs=53.0
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
.+++-|.+++.. .+.+++|.|+.|||||.+..--+...+.... -....+|+|+.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~------~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999976 3678999999999999864444433332211 1345699999999999999988887643
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.24 E-value=0.0034 Score=53.84 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 160 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~ 160 (472)
|.=.++.+++|+|||+. ++-.+.++.. .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~---------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIY---------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH---------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHH---------cCCceEEEEeccC
Confidence 44578899999999975 4444444433 3566899988653
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.18 E-value=0.03 Score=51.95 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999984
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.11 E-value=0.015 Score=54.28 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCHHHHHHHhhHh----cCC---cEEEEccCCCCcchhhHHHHHHHH
Q 012059 97 PTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 97 ~~~~Q~~~i~~~~----~~~---~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
++|||.+++..+. +|+ .+++.||.|+|||..+. .+...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHH
Confidence 4788888877654 443 38999999999998543 333433
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.93 E-value=0.013 Score=59.26 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCCHHHHHHHhhHhc--CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 96 MPTPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~--~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+.+ ..+. ..++|.+|+.+-+....+....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~------------~~~~vtAP~~~a~~~l~~~~~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA------------GRAIVTAPAKASTDVLAQFAGE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS------------SCEEEECSSCCSCHHHHHHHGG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH------------hCcEEECCCHHHHHHHHHHhhC--
Confidence 679999999988874 3458999999999996443333 2221 1268999998876543332211
Q ss_pred cCCCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhCCC
Q 012059 174 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL 253 (472)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~ 253 (472)
.|-+..|+.+.. .....+++|||||=.+- .+.+..++. .
T Consensus 240 ---------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~---~ 278 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS---R 278 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT---T
T ss_pred ---------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh---h
Confidence 133446655332 23358899999999773 455555544 3
Q ss_pred CceEeecccc
Q 012059 254 PQILMYSATI 263 (472)
Q Consensus 254 ~~~i~~SAT~ 263 (472)
-..++||.|.
T Consensus 279 ~~~v~~~tTv 288 (671)
T 2zpa_A 279 FPRTLLTTTV 288 (671)
T ss_dssp SSEEEEEEEB
T ss_pred CCeEEEEecC
Confidence 3346777775
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.91 E-value=0.082 Score=45.53 Aligned_cols=16 Identities=50% Similarity=0.698 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
.++++.||+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999974
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.83 E-value=0.027 Score=54.16 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=66.5
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcch
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 189 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (472)
.-+++.+++|+|||++....+ ..+.. .+.+++++. +.+.-+ .+.+..++...++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~---------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~-- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK---------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ-- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH---------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS--
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH---------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC--
Confidence 347889999999998543322 22222 245566555 333332 2344444444444332221111
Q ss_pred HHHHHHHhcCCCEEEeChHHHH-HHHHcCCCCCCCeeEEEEeccchhh---hcCcHHHHHHHHHhC-CCCceEeeccccc
Q 012059 190 ARQVYRIQQGVELIVGTPGRLI-DLLMKHDIELDDIRMFVLDEVDCML---QRGFRDQVMQIFRAI-SLPQILMYSATIS 264 (472)
Q Consensus 190 ~~~~~~~~~~~~I~i~Tp~~l~-~~~~~~~~~~~~~~~iVvDE~h~~~---~~~~~~~~~~i~~~~-~~~~~i~~SAT~~ 264 (472)
.|..+. ..+.. ....++++||+|++.+.. +..+...+..+.... +..-++.++|+..
T Consensus 163 ----------------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 163 ----------------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp ----------------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred ----------------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 122221 12221 122468899999998653 333455666665555 4445567777765
Q ss_pred HHHHHHHhhh
Q 012059 265 QEVEKMSSSI 274 (472)
Q Consensus 265 ~~~~~~~~~~ 274 (472)
......++.+
T Consensus 225 q~a~~~a~~f 234 (433)
T 3kl4_A 225 QKAYDLASRF 234 (433)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5444444444
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.77 E-value=0.014 Score=49.30 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=26.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
.++=.++.+|+|||||.- ++-.+.+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~---------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI---------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH---------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH---------cCCeEEEEccc
Confidence 355688999999999964 4444443332 24679999886
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.77 E-value=0.032 Score=53.01 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=19.6
Q ss_pred CeeEEEEeccchhhhcC-cHHHHHHHHHhC
Q 012059 223 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI 251 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~-~~~~~~~i~~~~ 251 (472)
...+||+||+|.+.... ....+..++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 35689999999987552 245555566544
No 124
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.76 E-value=0.014 Score=64.49 Aligned_cols=107 Identities=20% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCCHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 96 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 96 ~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.+++-|.++|..- +++++|.|..|||||.+.+--++..+.... ..-...++|++++|+..+..+.+.+......
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~----~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE----NPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS----SCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC----CCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 6799999999764 789999999999999975555555443311 0113457999999999999988887763211
Q ss_pred -CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHH
Q 012059 176 -LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM 215 (472)
Q Consensus 176 -~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~ 215 (472)
..- .... ......+..-..+-|+|...++.-+.
T Consensus 84 ~~~~------~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 84 ELVQ------RPGS-LHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp HHHH------STTC-HHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred Hhhc------Ccch-HHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 000 0000 11111222224578899988865444
No 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.75 E-value=0.066 Score=45.68 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
+++++.||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999984
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.53 E-value=0.049 Score=52.92 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
...+++.||+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999984
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.50 E-value=0.098 Score=47.06 Aligned_cols=17 Identities=41% Similarity=0.376 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.++++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999853
No 128
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.057 Score=51.93 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=35.5
Q ss_pred CCcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 70 PAPILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 70 p~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
..|..+|++.+--+...+.|... .+..|--++...+ -..+.+++.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 35677899998777777776542 1223322222221 1347899999999999984
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.34 E-value=0.093 Score=48.56 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCC-CCceEeec
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYS 260 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~-~~~~i~~S 260 (472)
...+++++||+|.+........+...+...+ ...+|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999862222344444444433 33444433
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.30 E-value=0.04 Score=52.36 Aligned_cols=18 Identities=39% Similarity=0.207 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999853
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.26 E-value=0.07 Score=48.34 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=30.8
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh--HhcCCcEEEEccCCCCcchh
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS--ALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~iv~a~TGsGKT~~ 127 (472)
|..+|+++.-.+...+.+...-. .+. ...+.+.. +..++++++.||+|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE-LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH-HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH-HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 44567887666666666653210 000 00111111 12457899999999999984
No 132
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.26 E-value=0.17 Score=46.76 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=30.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh-----cCCcEEEEccCCCCcchhh
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~-----~~~~~iv~a~TGsGKT~~~ 128 (472)
|..+|+++.-.+...+.+...-. .| ...+.+. ..+++++.||+|+|||+.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44678888766777766654310 00 0011111 2357999999999999853
No 133
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.06 Score=51.04 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=32.8
Q ss_pred CcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|++.+=-+...+.|.+. .+..|--++...+ ...+.+++.||+|+|||+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 3567899987556666666543 1112222221111 1347899999999999984
No 134
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.15 E-value=0.057 Score=56.23 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCCcEEEE
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVII 395 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gidi~~~~~VI~ 395 (472)
+.+++|.++++.-+...++.+.+. .+..+..+||+++..++...++.+.+|..+|+|+|. .+...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 468999999999888888777643 378999999999999999999999999999999998 4556688888988887
Q ss_pred ecC
Q 012059 396 FDM 398 (472)
Q Consensus 396 ~~~ 398 (472)
-..
T Consensus 497 DEa 499 (780)
T 1gm5_A 497 DEQ 499 (780)
T ss_dssp ESC
T ss_pred ccc
Confidence 543
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.07 E-value=0.12 Score=49.01 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.9
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999984
No 136
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.86 E-value=0.018 Score=50.72 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999984
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.85 E-value=0.22 Score=46.28 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999853
No 138
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.82 E-value=0.074 Score=44.39 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
.+++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999843
No 139
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.67 E-value=0.19 Score=42.32 Aligned_cols=136 Identities=12% Similarity=0.093 Sum_probs=68.9
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH-HHHHHHHHHHHHhcCCCCeEEEEEcC---
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE-LCIQVEEQAKLLGKGLPFKTALVVGG--- 186 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~~g--- 186 (472)
...+++..++|.|||.+++-.++..+ +.+.+|+|+.-.+. ....=.+.+..+ ++.....-.|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~----------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~ 93 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV----------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTW 93 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH----------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH----------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEccccccc
Confidence 45799999999999998766666554 34777888843221 000001122222 2222111111
Q ss_pred -cch-HHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCc--HHHHHHHHHhCCCCceEeecc-
Q 012059 187 -DAM-ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSA- 261 (472)
Q Consensus 187 -~~~-~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~--~~~~~~i~~~~~~~~~i~~SA- 261 (472)
... .+..... -+.| ..... .+.-..+++||+||+-.....++ .+.+..++...+...-+.+|+
T Consensus 94 ~~~~~~~~~~~a----------~~~l-~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 94 ETQNREADTAAC----------MAVW-QHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp CGGGHHHHHHHH----------HHHH-HHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CCCCcHHHHHHH----------HHHH-HHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 000 0000000 1111 11111 12235689999999987655542 456666666665555555554
Q ss_pred cccHHHHHHHh
Q 012059 262 TISQEVEKMSS 272 (472)
Q Consensus 262 T~~~~~~~~~~ 272 (472)
-.|+.+.+++.
T Consensus 162 ~ap~~l~e~AD 172 (196)
T 1g5t_A 162 GCHRDILDLAD 172 (196)
T ss_dssp SCCHHHHHHCS
T ss_pred CCcHHHHHhCc
Confidence 45666666544
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.46 E-value=0.3 Score=42.83 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=29.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 170 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 170 (472)
.|.-+++.||+|+|||..++ -++..+.. .+..++++.-.. -..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~-~~~~~~~~---------~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQ-QFLWNGLK---------MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHH-HHHHHHHH---------TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH-HHHHHHHh---------cCCeEEEEEccC-CHHHHHHHHH
Confidence 56779999999999998533 33333222 234577776432 2344444444
No 141
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.45 E-value=0.13 Score=50.01 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=25.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.|.-++|.|++|+|||.. ++-+...+.. ..+..++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~a~--------~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNAAL--------KEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH--------TTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH--------hCCCeEEEEEC
Confidence 456689999999999974 4444433332 12445777764
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.44 E-value=0.31 Score=46.87 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=31.8
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEc--CCHHHHHHHHHHHHHHhcCCCCeEE
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTA 181 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~ 181 (472)
.-+++.+++|+|||++..- +..++.. .+.+++++. |.+.-+ .+.+..++...++.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~---------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK---------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT---------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH---------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEE
Confidence 3478899999999986433 2233322 345566655 444433 3445555554455443
No 143
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.39 E-value=0.049 Score=52.91 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999843
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.25 E-value=0.043 Score=50.41 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999853
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.20 E-value=0.15 Score=46.68 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.4
Q ss_pred cEEEEccCCCCcchhhH
Q 012059 113 SLLVSANTGSGKTASFL 129 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~ 129 (472)
..++.||.|+|||..+.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997543
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.14 E-value=0.14 Score=48.04 Aligned_cols=39 Identities=8% Similarity=0.266 Sum_probs=23.8
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCC-ceEeecc
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLP-QILMYSA 261 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~-~~i~~SA 261 (472)
.+.+++|+||+|.+ +......+...+...+.. .+|+.|.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 46789999999984 443455566666665433 3444443
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.08 E-value=0.098 Score=49.53 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
++.+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999984
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.04 E-value=1.2 Score=38.54 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999984
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.21 Score=46.08 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=14.2
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
++++.||+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999853
No 150
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.47 E-value=0.51 Score=42.89 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..|.-+++.|++|+|||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred CCCeEEEEEeCCCCCHHHH
Confidence 3677899999999999984
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.47 E-value=0.14 Score=47.80 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCC-CceEeec
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMYS 260 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~-~~~i~~S 260 (472)
....+|++||+|.+.... ...+...+...+. ..+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 356799999999885332 3444455555433 3344433
No 152
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.083 Score=50.90 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=33.2
Q ss_pred CcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|++.+--+...+.|.+. .+..|-.++... +...+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 4567899987667777766543 111111111111 12347899999999999984
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.42 E-value=0.36 Score=46.99 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=25.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.|.-++|.|++|+|||.. ++-+...+.. ..+..++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~~--------~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVAT--------KTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHHH--------HSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHH--------hCCCcEEEEEC
Confidence 556799999999999984 3333333322 12445788764
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.28 E-value=0.34 Score=42.04 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|.-+++.+|+|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 567799999999999974
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.09 E-value=0.81 Score=42.95 Aligned_cols=41 Identities=10% Similarity=0.270 Sum_probs=23.1
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
.....+||+||+|.+.... ...+...+...+...++.++++
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEES
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEeC
Confidence 3456799999999885332 3334444444333334444444
No 156
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.07 E-value=0.32 Score=46.62 Aligned_cols=81 Identities=9% Similarity=0.056 Sum_probs=65.3
Q ss_pred CCCCCEEEEECCchhHHHHHHHHhhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-cc---ccCCCCCCc
Q 012059 318 HFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LG---RGVELLGVR 391 (472)
Q Consensus 318 ~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~---~Gidi~~~~ 391 (472)
..+.++||.++++..+..+++.++.. .+..+..++|+.+..++....+.+..|..+|+|+|.- +. .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 45678999999999999999988843 4779999999999988888889999999999999983 21 125556788
Q ss_pred EEEEecC
Q 012059 392 QVIIFDM 398 (472)
Q Consensus 392 ~VI~~~~ 398 (472)
+||.-..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886544
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.98 E-value=0.2 Score=47.03 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
.+.+++.||+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 367999999999999853
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.93 E-value=0.092 Score=52.17 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=25.1
Q ss_pred CCeeEEEEeccchhhhcC--cHHHHHHHHHhCCCCceEeecccc
Q 012059 222 DDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQILMYSATI 263 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~--~~~~~~~i~~~~~~~~~i~~SAT~ 263 (472)
....+|++||+|.+.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 345799999999986532 12344444443 445577777664
No 159
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.84 E-value=0.094 Score=48.66 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=25.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.|.-+++.|++|+|||.. ++-+...+.. .+..++|+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~---------~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALN---------DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH---------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH---------cCCeEEEEeC
Confidence 556699999999999984 3434333322 2456888764
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.66 E-value=0.32 Score=44.70 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
++++.||+|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 599999999999984
No 161
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.62 E-value=0.36 Score=45.91 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
.+++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999853
No 162
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.30 E-value=0.43 Score=44.40 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhCCCCceEeeccc
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 262 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~~~~~~i~~SAT 262 (472)
...+++|+||+|.+.... ...+..++...+....+.+.++
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~n 148 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLAN 148 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEec
Confidence 357899999999885432 3444455554433333333333
No 163
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.10 E-value=1.8 Score=36.32 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=53.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
++++||.++++.-+..+.+.+... ++.+..++|+....+... .+. ....|+|+| +.+. .++++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 456999999999999888888775 467888888876554333 233 358899999 4443 45678888
Q ss_pred eEEEEec
Q 012059 225 RMFVLDE 231 (472)
Q Consensus 225 ~~iVvDE 231 (472)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8888744
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.50 E-value=0.31 Score=46.57 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.7
Q ss_pred CcEEE--EccCCCCcchh
Q 012059 112 KSLLV--SANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv--~a~TGsGKT~~ 127 (472)
..++| .||+|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 46888 89999999984
No 165
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.41 E-value=1.8 Score=37.00 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCEEEEECCchhHHHHHHHHhhhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCCC
Q 012059 321 PPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLGV 390 (472)
Q Consensus 321 ~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gidi~~~ 390 (472)
.++||.++++..+..+++.+++.. +..+..++|+.+..++.. .+..+..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 489999999999998888776432 688999999988665543 344577899999962 1 234677788
Q ss_pred cEEEEecC
Q 012059 391 RQVIIFDM 398 (472)
Q Consensus 391 ~~VI~~~~ 398 (472)
++||.-..
T Consensus 160 ~~lViDEa 167 (220)
T 1t6n_A 160 KHFILDEC 167 (220)
T ss_dssp CEEEEESH
T ss_pred CEEEEcCH
Confidence 88886543
No 166
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.19 E-value=0.9 Score=40.80 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.5
Q ss_pred hHhcCCcEEEEccCCCCcchhhH
Q 012059 107 SALSGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 107 ~~~~~~~~iv~a~TGsGKT~~~~ 129 (472)
-+..|.-+++.+|+|+|||+.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHH
Confidence 34577889999999999998543
No 167
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.15 E-value=0.87 Score=49.83 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCCcEEE
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 394 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gidi~~~~~VI 394 (472)
.+.+++|.++++..+...++.+.+. .+..+..+++..+..++...++.+..|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 3558999999999998888877643 357889999999999999999999999999999996 556668888888888
Q ss_pred E
Q 012059 395 I 395 (472)
Q Consensus 395 ~ 395 (472)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 6
No 168
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.08 E-value=5.5 Score=36.63 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=29.5
Q ss_pred ChHHHHHHHHcCCCCCCCeeEEEEeccchhhh---cCcHHHHHHHHHhCCCCceEeec
Q 012059 206 TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ---RGFRDQVMQIFRAISLPQILMYS 260 (472)
Q Consensus 206 Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~---~~~~~~~~~i~~~~~~~~~i~~S 260 (472)
+...+.+.+..... .--+||+||+|.+.. ..+...+..+....+...+++.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g 177 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSG 177 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEE
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEc
Confidence 34555555544221 234899999999864 34555666665554444444433
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.00 E-value=0.59 Score=42.95 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=24.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.|.-++|.|++|+|||.. ++-+...+.. .+..++++.-
T Consensus 67 ~G~l~li~G~pG~GKTtl-~l~ia~~~a~---------~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF-ALKQAKNMSD---------NDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHHHT---------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH---------cCCeEEEEEC
Confidence 566799999999999974 3333333322 1356888763
No 170
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.77 E-value=0.24 Score=49.44 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.+..+++.+|+|+|||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999984
No 171
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.73 E-value=1.6 Score=35.51 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=53.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
+.++||.++++..+..+.+.+... ++.+..++|+....+... .+. ...+|+|+| +. ...++++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~-~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DV-AARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GG-GTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Ch-hhcCCchhcC
Confidence 457999999999999888888765 467888888876554333 233 347899999 33 3456678889
Q ss_pred eEEEEecc
Q 012059 225 RMFVLDEV 232 (472)
Q Consensus 225 ~~iVvDE~ 232 (472)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 98887554
No 172
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.66 E-value=1.8 Score=37.58 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCcchhhH
Q 012059 110 SGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~ 129 (472)
.|.-+.+.+|+|+|||..+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 56779999999999998543
No 173
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.61 E-value=0.17 Score=40.40 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCCcchh
Q 012059 108 ALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~ 127 (472)
...+.++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34678899999999999974
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.39 E-value=0.28 Score=45.19 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
..++++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999984
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.26 E-value=0.18 Score=40.33 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 012059 109 LSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~ 128 (472)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 36678999999999999853
No 176
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.06 E-value=0.81 Score=49.76 Aligned_cols=81 Identities=9% Similarity=0.065 Sum_probs=65.4
Q ss_pred CCCCCEEEEECCchhHHHHHHHHhhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccc---cCCCCCCc
Q 012059 318 HFTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGR---GVELLGVR 391 (472)
Q Consensus 318 ~~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~---Gidi~~~~ 391 (472)
..+.++||.++++..+..+++.++.. .+..+..+||+++..++....+.+..|..+|+|+|.- +.. -+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 45668999999999999999999842 4678999999999988888999999999999999972 211 14566788
Q ss_pred EEEEecC
Q 012059 392 QVIIFDM 398 (472)
Q Consensus 392 ~VI~~~~ 398 (472)
+||.-..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8887544
No 177
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.98 E-value=0.38 Score=46.09 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=18.9
Q ss_pred HHHHHhhHh--cCCcEEEEccCCCCcchh
Q 012059 101 QMQAIPSAL--SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 101 Q~~~i~~~~--~~~~~iv~a~TGsGKT~~ 127 (472)
+..++..++ .+.-++|.+|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 444444444 445689999999999983
No 178
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.75 E-value=0.25 Score=44.04 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCCCcchh
Q 012059 108 ALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~ 127 (472)
+..|.-+++.+|||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677899999999999983
No 179
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.73 E-value=3.2 Score=38.22 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.++.++|.||.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 357899999999999973
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.46 E-value=0.95 Score=41.73 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=31.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH-HHHHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL-CIQVEEQAKLL 172 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L-~~q~~~~~~~~ 172 (472)
.|.-+++.|++|+|||..++. +...+... ....+.+..++++.-...+ ..++.+.+..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~-la~~~~~~---~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQ-LSVNVQLP---PEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHTTSC---GGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHH-HHHHHhcc---cccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456799999999999984333 33222110 0011225578888754322 33344444443
No 181
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.02 E-value=0.78 Score=37.91 Aligned_cols=117 Identities=10% Similarity=0.138 Sum_probs=68.7
Q ss_pred CHHHHHHHhhHhc--CCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhcC
Q 012059 98 TPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 175 (472)
Q Consensus 98 ~~~Q~~~i~~~~~--~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 175 (472)
.+-|..++..++. .+-.+|.++-|++||...+--++.... ..|..+.+|+|+..-... +.+.
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~---------~~Gr~V~vLAp~~~s~~~-------l~~~ 99 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR---------EQGREVQIIAADRRSQMN-------MKQD 99 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH---------HTTCCEEEECSTTHHHHH-------HSCT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH---------hcCeEEEEEcCchHHHHH-------HHhh
Confidence 3568899988873 345778999999999864333333222 357889999999766543 2222
Q ss_pred CCCeEEEEEcCcchHHHHHHHhcCCCEEEeChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcCcHHHHHHHHHhC--CC
Q 012059 176 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SL 253 (472)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~--~~ 253 (472)
.++.. +++ +. ..+......+..=+.+|||||-.+. ..++..++..- .+
T Consensus 100 ~~l~~--------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~n 149 (189)
T 2l8b_A 100 ERLSG--------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHN 149 (189)
T ss_dssp TTCSS--------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTT
T ss_pred cCcCc--------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcC
Confidence 22110 000 11 1122233334455689999999986 34444444433 56
Q ss_pred CceEeec
Q 012059 254 PQILMYS 260 (472)
Q Consensus 254 ~~~i~~S 260 (472)
.|+|++-
T Consensus 150 aqvvll~ 156 (189)
T 2l8b_A 150 VQVLITD 156 (189)
T ss_dssp CCEEEEE
T ss_pred CEEEEeC
Confidence 7777764
No 182
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.67 E-value=1.1 Score=41.20 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=27.4
Q ss_pred eeEEEEeccchhhh-cCcHHHHHHHHHhC-CCCceEeecccccHHHHHHHhhh
Q 012059 224 IRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI 274 (472)
Q Consensus 224 ~~~iVvDE~h~~~~-~~~~~~~~~i~~~~-~~~~~i~~SAT~~~~~~~~~~~~ 274 (472)
.+++++|.+.+.-. ......+..+.+.+ +...++.+.++...++...++.+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45788898876431 22344444444433 55556666666655454444433
No 183
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.52 E-value=2.4 Score=36.20 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=52.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHH---Hhc-CCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
+.++||.++++.-+..+.+.+... ++.+..++|+....+.... +.. ..+|+|+| +. ...++++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~-~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DV-AARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TT-TTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Ch-hhcCCCCccC
Confidence 457999999999999888888775 4678888888776554333 333 47899999 33 3456678889
Q ss_pred eEEEE
Q 012059 225 RMFVL 229 (472)
Q Consensus 225 ~~iVv 229 (472)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98885
No 184
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.46 E-value=2.1 Score=35.16 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=53.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++..+..+++.+... ++.+..++|+....+... .+. ...+|+|+|. ....++++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCccc
Confidence 4568999999999988877777653 567888888876554433 233 3488999993 2345668889
Q ss_pred eeEEEEecc
Q 012059 224 IRMFVLDEV 232 (472)
Q Consensus 224 ~~~iVvDE~ 232 (472)
+++||.-+.
T Consensus 103 ~~~Vi~~d~ 111 (175)
T 2rb4_A 103 VTIVVNFDL 111 (175)
T ss_dssp EEEEEESSC
T ss_pred CCEEEEeCC
Confidence 999886443
No 185
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.32 E-value=0.66 Score=42.34 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=27.7
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 162 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~ 162 (472)
-+++.+|+|+|||...+ .++..+.. .+.+.+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~L-q~~~~~~~-------~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGL-TMVSSYMR-------QYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHH-HHHHHHHH-------HCTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHh-------cCCCceEEEEeccchhh
Confidence 58899999999998544 33333332 02356799988765553
No 186
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.18 E-value=0.55 Score=46.34 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=25.5
Q ss_pred HHHHHCCCCCCCHHHHHHHhh-HhcCCcEEEEccCCCCcchh
Q 012059 87 QNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 87 ~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~iv~a~TGsGKT~~ 127 (472)
..+...|. +.+.+...+.. +..|.++++.||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444552 33444444443 34788999999999999983
No 187
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.12 E-value=2.5 Score=34.27 Aligned_cols=75 Identities=9% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++.-+..+.+.+... ++.+..++|+....+... .+. ....|+|+|. . ...++++.+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~ 98 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQ 98 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCccc
Confidence 3467999999999998888877764 467888888876554332 233 3478999993 3 345667888
Q ss_pred eeEEEEecc
Q 012059 224 IRMFVLDEV 232 (472)
Q Consensus 224 ~~~iVvDE~ 232 (472)
+++||.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888887544
No 188
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.06 E-value=2.3 Score=38.47 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.++-+.+.++.|+|||+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455778899999999753
No 189
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.72 E-value=0.48 Score=45.83 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 163 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~ 163 (472)
...+++|.|+||||||.. +..++..++. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~---------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLL---------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHH---------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHH---------CCCcEEEEeCCCchhH
Confidence 457899999999999986 3444444443 2456888888888754
No 190
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.56 E-value=0.86 Score=44.07 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=25.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.|.-++|.|++|+|||.. ++-+...+.. .+..+++++-
T Consensus 196 ~G~liiIaG~pG~GKTtl-al~ia~~~a~---------~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAF-ALKQAKNMSD---------NDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHH-HHHHHHHHHH---------TTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHH---------cCCEEEEEEC
Confidence 556699999999999984 4444443333 1456888873
No 191
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.45 E-value=2.3 Score=40.37 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.|.-+.|.+|+|+|||...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TTSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEEcCCCCChHHHH
Confidence 3466999999999999843
No 192
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.44 E-value=3.7 Score=33.60 Aligned_cols=76 Identities=9% Similarity=0.206 Sum_probs=54.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++.-+..+++.+... ++.+..++|+....+... .+. ....|+|+|. ....++++.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~ 99 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIER 99 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhh
Confidence 3457999999999999888887765 467888888876554333 233 3488999993 2345667888
Q ss_pred eeEEEEeccc
Q 012059 224 IRMFVLDEVD 233 (472)
Q Consensus 224 ~~~iVvDE~h 233 (472)
+++||.-+..
T Consensus 100 ~~~Vi~~d~p 109 (172)
T 1t5i_A 100 VNIAFNYDMP 109 (172)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEECCC
Confidence 8888875543
No 193
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.16 E-value=0.63 Score=43.51 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.+..+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455799999999999983
No 194
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.15 E-value=0.32 Score=55.48 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.++++++.+|+|+|||..+...+.+.. ..+.+++++.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~----------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ----------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH----------TTTCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----------HcCCcEEEEEccccc
Confidence 368999999999999986544444332 236678888865443
No 195
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.14 E-value=0.83 Score=39.06 Aligned_cols=37 Identities=22% Similarity=0.097 Sum_probs=28.5
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
+.-|..++..+..|.-+.+.+|.|+|||+ ++-++.-+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKST--Ll~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTY--LAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTH--HHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 34567788888889999999999999998 44444444
No 196
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.09 E-value=3.8 Score=35.64 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=54.7
Q ss_pred CCCCEEEEECCchhHHHHHHHHhh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-ccCCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILG-RGVELLG 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gidi~~ 389 (472)
.+.++||.++++..+..+++.++. ..+..+..++|+.+...+...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 355799999999998888776653 347889999999987765554432 478999996 222 2357788
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88888643
No 197
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.02 E-value=0.5 Score=44.40 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=19.6
Q ss_pred HhcCCcEEEEccCCCCcchhhHHHHHH
Q 012059 108 ALSGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
+..|..+++.||||||||+ ++-++.
T Consensus 172 i~~G~~i~ivG~sGsGKST--ll~~l~ 196 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT--LMKALM 196 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH--HHHHHH
T ss_pred HhcCCEEEEECCCCCCHHH--HHHHHH
Confidence 3488999999999999998 344443
No 198
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.97 E-value=2.4 Score=35.31 Aligned_cols=74 Identities=11% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHH---HHHHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYRIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++.-+..+.+.+... ++.+..++|+....+. ...+. ....|+|+| +.+ ..++++.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVA-ARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chh-hcCCCccc
Confidence 4567999999999999888877764 4677888887654332 23333 357899999 333 34557788
Q ss_pred eeEEEEec
Q 012059 224 IRMFVLDE 231 (472)
Q Consensus 224 ~~~iVvDE 231 (472)
+++||.=+
T Consensus 115 ~~~VI~~d 122 (185)
T 2jgn_A 115 VKHVINFD 122 (185)
T ss_dssp BSEEEESS
T ss_pred CCEEEEeC
Confidence 88888643
No 199
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.92 E-value=0.98 Score=41.29 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
++++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999843
No 200
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.65 E-value=4.2 Score=34.11 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=52.4
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----ccc-cCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LGR-GVELL 388 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gidi~ 388 (472)
.+.++||.++++..+..+++.+.... +..+..++|+.+..+.... + .+..+|+|+|.- +.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 34579999999999988888776332 6778889999886543322 2 356789999972 222 34667
Q ss_pred CCcEEEEec
Q 012059 389 GVRQVIIFD 397 (472)
Q Consensus 389 ~~~~VI~~~ 397 (472)
++++||.-.
T Consensus 146 ~~~~lViDE 154 (206)
T 1vec_A 146 HVQMIVLDE 154 (206)
T ss_dssp TCCEEEEET
T ss_pred cCCEEEEEC
Confidence 788887643
No 201
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.10 E-value=5.2 Score=33.55 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=52.9
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-ccCCCCCCc
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILG-RGVELLGVR 391 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gidi~~~~ 391 (472)
.+.++||.++++..+..+++.+.... ...+..++|+.+.......+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 45679999999999999998887443 467888898887554433332 2578999996 122 246677888
Q ss_pred EEEEec
Q 012059 392 QVIIFD 397 (472)
Q Consensus 392 ~VI~~~ 397 (472)
+||.-.
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888643
No 202
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=84.96 E-value=1.4 Score=43.49 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=25.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 157 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~P 157 (472)
.|.-++|.|++|+|||.. ++-++..+.. ..+..++++.-
T Consensus 241 ~G~l~li~G~pG~GKT~l-al~~a~~~a~--------~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTF-VRQQALQWGT--------AMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHH-HHHHHHHHTT--------TSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHH-HHHHHHHHHH--------hcCCcEEEEec
Confidence 566799999999999984 3444433322 12456787764
No 203
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.92 E-value=6.2 Score=36.64 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.|+-+.+.+|.|+|||...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4456899999999999843
No 204
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.16 E-value=4.9 Score=35.18 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCEEEEECCchhHHHHHHHHhh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----cc--ccCCCCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LG--RGVELLG 389 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gidi~~ 389 (472)
+.++||.++++..+..+++.++. ..+..+..++|+.+..++...+ .+..+|+|+|.- +. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999998888877763 2378889999998866544333 356889999962 11 3567788
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 187 ~~~lViDE 194 (249)
T 3ber_A 187 LKYLVMDE 194 (249)
T ss_dssp CCEEEECS
T ss_pred cCEEEEcC
Confidence 88888643
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.10 E-value=2 Score=45.38 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
..++++.||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 45799999999999984
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.08 E-value=0.52 Score=43.61 Aligned_cols=18 Identities=50% Similarity=0.757 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCCcch
Q 012059 109 LSGKSLLVSANTGSGKTA 126 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~ 126 (472)
..|+.+++.+|||||||+
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 378899999999999998
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.68 E-value=1.3 Score=40.38 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=30.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhh-HhcCCcEEEEccCCCCcchh
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~iv~a~TGsGKT~~ 127 (472)
|..+|+++.-.+...+.+...- ..|..+....... +..++.+++.||+|+|||+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 4567888766666666554320 0000000000000 12457799999999999984
No 208
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.38 E-value=2.1 Score=42.36 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=60.5
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-cc-----ccCCCCCCcEE
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LG-----RGVELLGVRQV 393 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~-----~Gidi~~~~~V 393 (472)
.+.+||.++++..+......|. ..+..+..+|++.+..++..+...+..|..+|+++|.- +. ..++..++.+|
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~-~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQ-ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 3579999999999999999998 67999999999999999999999999999999999962 21 12333456666
Q ss_pred EE
Q 012059 394 II 395 (472)
Q Consensus 394 I~ 395 (472)
|.
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 209
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.26 E-value=2.3 Score=39.05 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhhH
Q 012059 111 GKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~ 129 (472)
|.-+++.+++|+|||..++
T Consensus 98 g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998443
No 210
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.20 E-value=0.58 Score=44.15 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..|..+++.||||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3667899999999999983
No 211
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=83.04 E-value=1.2 Score=43.41 Aligned_cols=52 Identities=10% Similarity=0.253 Sum_probs=39.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHhc
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 174 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 174 (472)
.+....+.+-||||||++. ..++.. .+..+|||+|+...|.|++++++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~------------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAER------------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHH------------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHH------------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4567899999999999842 222221 233489999999999999999998854
No 212
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.03 E-value=10 Score=35.69 Aligned_cols=72 Identities=11% Similarity=0.224 Sum_probs=53.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++..+..+++.+... ++.+..++|+....+... .+. ...+|+|+| +.+ ..++++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chh-hcCCCccc
Confidence 5678999999999999888887764 467888888877554333 233 357899999 444 45668889
Q ss_pred eeEEEE
Q 012059 224 IRMFVL 229 (472)
Q Consensus 224 ~~~iVv 229 (472)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998886
No 213
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.86 E-value=12 Score=32.54 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=51.7
Q ss_pred CCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLGV 390 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gidi~~~ 390 (472)
+.++||.++++..+..+++.+... .+..+..++|+.+.......+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 458999999999999888777632 356788889888755433322 356789999972 2 123577788
Q ss_pred cEEEEec
Q 012059 391 RQVIIFD 397 (472)
Q Consensus 391 ~~VI~~~ 397 (472)
++||.-.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8888643
No 214
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=82.70 E-value=3.1 Score=45.10 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=58.5
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCC----eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCC-CCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGM----KALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVE-LLG 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gid-i~~ 389 (472)
.+.++||.++++..+..+++.++.. .+. .+..++|+.+..++....+.+.+ .+|+|+|+ .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4568999999999999888877632 355 78999999998888777777776 89999997 2322222 557
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 88888643
No 215
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=82.42 E-value=18 Score=36.87 Aligned_cols=79 Identities=13% Similarity=0.242 Sum_probs=58.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHH---Hh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++|+..+..+.+.+... ++.+..++|+....+.... +. ...+|+|+|. . ...++++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCC
Confidence 4568999999999999888877775 4677777877665443333 33 3489999983 2 356778899
Q ss_pred eeEEEEeccchhh
Q 012059 224 IRMFVLDEVDCML 236 (472)
Q Consensus 224 ~~~iVvDE~h~~~ 236 (472)
+++||+-|++...
T Consensus 514 v~lVi~~d~d~~G 526 (661)
T 2d7d_A 514 VSLVAILDADKEG 526 (661)
T ss_dssp EEEEEETTTTCCT
T ss_pred CCEEEEeCccccc
Confidence 9999999987654
No 216
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.41 E-value=0.99 Score=42.87 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=28.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.+.+++|.|+||+|||...- .++..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~-~~~~~~~~---------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAK-MLLLREYM---------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHH-HHHHHHHT---------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHH-HHHHHHHH---------CCCEEEEEeCCcCH
Confidence 56789999999999998433 33333222 35668888887654
No 217
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.28 E-value=2.3 Score=42.79 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=52.8
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSF--LVGEVPVIVATG 379 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 379 (472)
.+.+||.++++..+......|. ..+..+..++|+++..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~-~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLK-QLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHH-HHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHH-hcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4579999999999999999998 5699999999999999998888888 578899999998
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=81.71 E-value=1.3 Score=40.40 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=18.4
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
+.-+.+.+|+|+|||+ ++..+..+..
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHH
Confidence 4568889999999998 4444444443
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.48 E-value=0.72 Score=38.30 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|+-+++.||+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999983
No 220
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=81.40 E-value=0.89 Score=38.45 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|+-+.+.||+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467799999999999983
No 221
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.40 E-value=4 Score=35.03 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=49.5
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------ccccCCCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI------LGRGVELLGV 390 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gidi~~~ 390 (472)
.+.++||.++++..+..+++.+... .+..+..++|+.+..++... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999888743 36778888988775544332 22 34789999961 1234667888
Q ss_pred cEEEEec
Q 012059 391 RQVIIFD 397 (472)
Q Consensus 391 ~~VI~~~ 397 (472)
++||.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8888643
No 222
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.12 E-value=4.6 Score=34.75 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=52.8
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELL 388 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gidi~ 388 (472)
.+.++||.++++..+..+++.+.... +..+..++|+.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 34689999999999999888887432 67888999998876554432 35789999972 2 1345666
Q ss_pred CCcEEEEe
Q 012059 389 GVRQVIIF 396 (472)
Q Consensus 389 ~~~~VI~~ 396 (472)
++++||.-
T Consensus 166 ~~~~lViD 173 (230)
T 2oxc_A 166 SIRLFILD 173 (230)
T ss_dssp GCCEEEES
T ss_pred cCCEEEeC
Confidence 77777763
No 223
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.00 E-value=1.8 Score=41.55 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=31.5
Q ss_pred CcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|++.+--+...+.+... .+..|--++... +...+.+++.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 4567788887555555555432 111221111111 11347799999999999984
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.89 E-value=1.2 Score=39.03 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchhhH
Q 012059 110 SGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~ 129 (472)
.|.-+++.|++|+|||..++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHH
Confidence 45679999999999997433
No 225
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.71 E-value=0.74 Score=38.84 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.++-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4567999999999999743
No 226
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.70 E-value=0.76 Score=38.07 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
.+++++.||+|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999985
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.67 E-value=0.63 Score=42.89 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
+-++|.||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999853
No 228
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.61 E-value=2.4 Score=38.96 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=29.6
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh-----cCCcEEEEccCCCCcchh
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-----SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~-----~~~~~iv~a~TGsGKT~~ 127 (472)
|..+|++.+-.+...+.|...-. .|.+ .+.+. ..+.+++.||+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 45678888766666666643200 0000 01121 236799999999999984
No 229
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.53 E-value=8.6 Score=35.91 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=55.3
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTT----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLG 389 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gidi~~ 389 (472)
+.++||.|+++..+..+++.+.+.. +..+..++|+.+..+.... +..+..+|+|+|.- + ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4589999999999998888776332 7889999999987655443 44577899999962 2 23456778
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88888643
No 230
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=80.52 E-value=16 Score=36.12 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCC
Q 012059 147 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELD 222 (472)
Q Consensus 147 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~ 222 (472)
..+.++||.|+++.-+..+++.+..... .++.+..++|+....+... .+. ...+|+|||. . ...++++.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~GiDip 409 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFP 409 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h-hhcCCCcc
Confidence 3467899999999999999998887643 2467888888876554333 233 3588999993 3 34567888
Q ss_pred CeeEEEEeccc
Q 012059 223 DIRMFVLDEVD 233 (472)
Q Consensus 223 ~~~~iVvDE~h 233 (472)
++++||.-..-
T Consensus 410 ~v~~VI~~~~p 420 (563)
T 3i5x_A 410 NVHEVLQIGVP 420 (563)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEECCC
Confidence 99988866543
No 231
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.48 E-value=2.1 Score=40.97 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=31.2
Q ss_pred CcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|++.+=-+...+.+... .+..|--++... +...+.+++.||+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 4567899887555555555432 111111111111 11346799999999999984
No 232
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.33 E-value=5.2 Score=36.26 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=52.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHH---Hh-cCCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQ-QGVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
+.++||.++++.-+..+++.+.. .++.+..++|+....+.... +. ...+|+|+| +.. ..++++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccce
Confidence 56799999999988877776654 35788889998765554333 33 348899999 333 456678889
Q ss_pred eEEEEecc
Q 012059 225 RMFVLDEV 232 (472)
Q Consensus 225 ~~iVvDE~ 232 (472)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 98885443
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.29 E-value=0.82 Score=38.66 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.++.+++.|++|||||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999853
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.26 E-value=0.62 Score=44.42 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=31.7
Q ss_pred CcccCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|++.+=-+...+.|.+. .+..|--++...+ -..+.+++.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 4567888886455555555432 1222222222111 1246799999999999984
No 235
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.20 E-value=0.64 Score=38.34 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
++-+++.|++|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.14 E-value=0.81 Score=38.00 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCcchhhH
Q 012059 111 GKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~ 129 (472)
++.+++.|++|||||+..-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999998543
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.92 E-value=0.79 Score=45.01 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.2
Q ss_pred HHHhhHhcCCcEEEEccCCCCcchh
Q 012059 103 QAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 103 ~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.++-.+..+.++++.||+|+|||..
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHH
Confidence 3444556889999999999999984
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=79.75 E-value=0.8 Score=37.89 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 012059 109 LSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~ 128 (472)
..++.+++.|++|||||+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999853
No 239
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=79.68 E-value=3 Score=36.96 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHH-HhhHhcCC-----cEEEEccCCCCcchhh
Q 012059 83 QKLLQNIEAAGYDMPTPVQMQA-IPSALSGK-----SLLVSANTGSGKTASF 128 (472)
Q Consensus 83 ~~i~~~l~~~g~~~~~~~Q~~~-i~~~~~~~-----~~iv~a~TGsGKT~~~ 128 (472)
..+.+.|+-.|+. +++-.. +..++.++ .+++.||+|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3677778777874 444333 44555443 4999999999999854
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=79.64 E-value=0.88 Score=38.82 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|+-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688999999999984
No 241
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.60 E-value=1.1 Score=39.75 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.+.++++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 567899999999999974
No 242
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=79.36 E-value=1 Score=41.94 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=19.0
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|-| ++.-|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3455668877 677889999999864
No 243
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.23 E-value=5.5 Score=34.34 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=50.0
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c----cc--cCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L----GR--GVELL 388 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~----~~--Gidi~ 388 (472)
.+.++||.++++..+..+++.++.. .+..+..++|+.+.......+ +..+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3567999999999999888888732 247888899987755433322 46789999962 2 12 36667
Q ss_pred CCcEEEEe
Q 012059 389 GVRQVIIF 396 (472)
Q Consensus 389 ~~~~VI~~ 396 (472)
++++||.-
T Consensus 171 ~~~~lViD 178 (236)
T 2pl3_A 171 DLQMLVLD 178 (236)
T ss_dssp TCCEEEET
T ss_pred cccEEEEe
Confidence 78888764
No 244
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.22 E-value=0.82 Score=38.81 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=38.8
Q ss_pred ccCCCHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHhcC----CcEEEEccC
Q 012059 45 FQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG----KSLLVSANT 120 (472)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~~~----~~~iv~a~T 120 (472)
..+|+..+|-..+-+.-. ++ +=-..|.+.|+-.|+ .+-.. ...+..++.+ +.+++.+|+
T Consensus 5 ~~~m~~~~~i~~~~~~~~---~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPP 67 (212)
T 1tue_A 5 GSGSNMSQWIRFRCSKID---EG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPA 67 (212)
T ss_dssp -CCSCHHHHHHHHHHTSC---SC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCG
T ss_pred HHhcCHHHHHHHHHHHcc---CC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCC
Confidence 566787777776554321 11 112345555553343 23333 3334444433 359999999
Q ss_pred CCCcchhhHHHHHH
Q 012059 121 GSGKTASFLVPVIS 134 (472)
Q Consensus 121 GsGKT~~~~l~~~~ 134 (472)
|+|||.. ...++.
T Consensus 68 GtGKTt~-a~ala~ 80 (212)
T 1tue_A 68 NTGKSYF-GMSFIH 80 (212)
T ss_dssp GGCHHHH-HHHHHH
T ss_pred CCCHHHH-HHHHHH
Confidence 9999984 344443
No 245
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.15 E-value=3 Score=37.56 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=29.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHH-HHHhhH-hcCCcEEEEccCCCCcchhh
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQM-QAIPSA-LSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~-~~i~~~-~~~~~~iv~a~TGsGKT~~~ 128 (472)
+..+|+++.-.+...+.+...-. .+... +.+..+ ..++.+++.||+|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 44577877656666666643200 00000 000001 13578999999999999843
No 246
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.96 E-value=9.6 Score=38.09 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++.-+..+++.+..... .++.+..++|+....+... .+. ...+|+|||. . ...++++.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~-~~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-hhcCCCccc
Confidence 467899999999999999998887643 2467888888876554332 233 3588999993 3 345678889
Q ss_pred eeEEEEeccc
Q 012059 224 IRMFVLDEVD 233 (472)
Q Consensus 224 ~~~iVvDE~h 233 (472)
+++||.-...
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 9998876654
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.93 E-value=2.8 Score=39.21 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
...++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999853
No 248
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=78.88 E-value=8.2 Score=36.32 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=54.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
+.++||.++++.-+..+++.+... +..+..++|+....+... .+. ...+|+|+|. . ...++++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCC
Confidence 467999999999999888888775 456778888876554433 233 3478999993 3 3466788999
Q ss_pred eEEEEecc
Q 012059 225 RMFVLDEV 232 (472)
Q Consensus 225 ~~iVvDE~ 232 (472)
++||.-..
T Consensus 336 ~~Vi~~~~ 343 (412)
T 3fht_A 336 SVVINFDL 343 (412)
T ss_dssp EEEEESSC
T ss_pred CEEEEECC
Confidence 99885443
No 249
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.84 E-value=1.5 Score=41.05 Aligned_cols=18 Identities=39% Similarity=0.748 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467999999999999853
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.42 E-value=1.9 Score=39.08 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhhH
Q 012059 110 SGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~ 129 (472)
.++.+++.+++|+|||+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999998543
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.13 E-value=1.4 Score=40.17 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.|.-+.+.+|+|+|||+. +..+..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 345688999999999983 44444443
No 252
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.13 E-value=5.1 Score=34.65 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-cCCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGR-GVELLG 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gidi~~ 389 (472)
.+.++||.++++..+..+++.++.. .+..+..++|+.+... ..+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3568999999999999988888632 2567777888765433 23345567789999994 2333 356777
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 88887643
No 253
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=78.12 E-value=25 Score=35.72 Aligned_cols=78 Identities=9% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHH---Hhc-CCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYR---IQQ-GVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++|+..+..+.+.+... ++.+..++|+....+.... +.. ..+|+||| +.+ ..++++.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCC
Confidence 3568999999999999888877775 4677777777655443333 333 48899998 333 46678899
Q ss_pred eeEEEEeccchh
Q 012059 224 IRMFVLDEVDCM 235 (472)
Q Consensus 224 ~~~iVvDE~h~~ 235 (472)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888754
No 254
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.06 E-value=11 Score=33.10 Aligned_cols=74 Identities=15% Similarity=0.036 Sum_probs=52.7
Q ss_pred CCCCEEEEECCchhHHHHHHHHhh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cc--cccCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----IL--GRGVELL 388 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~--~~Gidi~ 388 (472)
.+.++||.++++..+...++.+++ ..+..+..++|+......... +..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999999998888774 235677888998886554433 3334 88999995 12 1246778
Q ss_pred CCcEEEEe
Q 012059 389 GVRQVIIF 396 (472)
Q Consensus 389 ~~~~VI~~ 396 (472)
++++||.-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 88888864
No 255
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.97 E-value=0.73 Score=42.56 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.8
Q ss_pred hHhcCCcEEEEccCCCCcchh
Q 012059 107 SALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 107 ~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.+..++++++.||+|+|||..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHH
Confidence 344788999999999999974
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.96 E-value=0.87 Score=41.48 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
+-++|.||||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999853
No 257
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.90 E-value=1.3 Score=40.77 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=18.4
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344567877 677899999999864
No 258
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.76 E-value=3.8 Score=37.00 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
...++++.||+|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999843
No 259
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=77.58 E-value=1.1 Score=37.26 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+..+++.|++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.48 E-value=1.3 Score=37.31 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|.-+.+.||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 566788999999999984
No 261
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=77.44 E-value=12 Score=34.94 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=56.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHhc-CCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++.-+..+++.++.. +..+..++|+....+... .+.. ..+|+|+|. .-..++++++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 4578999999999999888888765 456778888766554332 3333 478999993 3356678999
Q ss_pred eeEEEEeccch
Q 012059 224 IRMFVLDEVDC 234 (472)
Q Consensus 224 ~~~iVvDE~h~ 234 (472)
+++||.-+...
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999766553
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.28 E-value=0.82 Score=37.35 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-+++.|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 263
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.07 E-value=1 Score=40.89 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-++|+||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999853
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=77.04 E-value=1.5 Score=37.76 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..|+-+.+.||+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999983
No 265
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.91 E-value=1.2 Score=50.28 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=35.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 173 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 173 (472)
.|+-+.+.+|.|||||+.++..+.+ .. ..+..++++.+-.+|.... +++++
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~-~~---------~~g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAA-AQ---------REGKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH-HH---------HTTCCEEEECTTSCCCHHH---HHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH-HH---------hcCCeEEEEecCCCCCHHH---HHHcC
Confidence 4577999999999999965444433 22 2467799999877775543 55655
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.80 E-value=1.3 Score=36.24 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
+..+++.|++|||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999984
No 267
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=76.72 E-value=1.1 Score=39.67 Aligned_cols=16 Identities=38% Similarity=0.248 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-+++.||||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999854
No 268
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.60 E-value=2.2 Score=36.76 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=16.4
Q ss_pred cEEEEccCCCCcchhhHHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVI 133 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~ 133 (472)
++++.++.|.|||..++-.+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999986544443
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=76.59 E-value=1.2 Score=37.71 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..|.-+.+.||+|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999984
No 270
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=76.35 E-value=1.3 Score=40.94 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=18.1
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-|+||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344557776 677899999999864
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.35 E-value=1.3 Score=37.39 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|+-+++.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 677799999999999984
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.32 E-value=1 Score=37.59 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..|.-+++.||+|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567799999999999983
No 273
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=76.31 E-value=1.5 Score=40.75 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=17.7
Q ss_pred hhHhcCCc--EEEEccCCCCcchhh
Q 012059 106 PSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 106 ~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
..++.|.| ++.-|+||||||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567776 667889999999864
No 274
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=76.31 E-value=1.5 Score=40.81 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=18.5
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 445567876 667899999999864
No 275
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=76.30 E-value=1.5 Score=40.40 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=20.1
Q ss_pred HHHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 103 QAIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 103 ~~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
..+..++.|.| ++.-|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35556678877 667899999999864
No 276
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=76.28 E-value=1.5 Score=41.15 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=18.1
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-|+||||||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344567876 667889999999864
No 277
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.22 E-value=17 Score=35.89 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..|.-+++.+++|+|||..
T Consensus 279 ~~G~i~~i~G~~GsGKSTL 297 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLL 297 (525)
T ss_dssp ESSCEEEEEECTTSSHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH
Confidence 3667799999999999984
No 278
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.16 E-value=1.5 Score=40.86 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=18.2
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++..|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 334567776 667899999999864
No 279
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=76.08 E-value=1.5 Score=40.63 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.7
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++.-|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566678877 667889999999864
No 280
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=76.07 E-value=1.5 Score=40.89 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=18.8
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++.-++||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445567877 566889999999864
No 281
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=76.05 E-value=4.3 Score=39.06 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=45.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 227 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~i 227 (472)
+.++||+||++.-+..+++.++.. ++.+..++|. ........+.. ..+|+||| +.+ ..+++++ +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIA-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SST-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chh-heeeccC-ceEE
Confidence 467999999999999988888775 4677777773 34444444444 48999999 333 4556777 8887
Q ss_pred E
Q 012059 228 V 228 (472)
Q Consensus 228 V 228 (472)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=76.03 E-value=1.4 Score=37.32 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..++-++++||+|||||+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCEEEECCTTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 4677899999999999984
No 283
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=76.03 E-value=1.5 Score=40.84 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=18.9
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++.-|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445668877 667889999999874
No 284
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.98 E-value=3.5 Score=38.41 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=37.7
Q ss_pred ccCCCHHHHHHHHHhcCceeeCCCCCCcccCcccCCCCHHHHHHHHHCCC---CCCCHHHHHHHhhHhcCCcEEEEccCC
Q 012059 45 FQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGY---DMPTPVQMQAIPSALSGKSLLVSANTG 121 (472)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~l~~~g~---~~~~~~Q~~~i~~~~~~~~~iv~a~TG 121 (472)
+....+...+.+....-. ..+..+|+++.-.+...+.+...-. ..+..+. ......+.+++.||+|
T Consensus 59 l~~~~~~~~~~i~~~i~~-------~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vLl~GppG 127 (357)
T 3d8b_A 59 LKNLEPKMIELIMNEIMD-------HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT----GLRGPPKGILLFGPPG 127 (357)
T ss_dssp STTSCHHHHHHHHHHTBC-------CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSC----GGGSCCSEEEEESSTT
T ss_pred hccCChHHHHHHHhhccc-------CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHh----hccCCCceEEEECCCC
Confidence 444555555555444211 1234567776555666665543200 0000000 0112356899999999
Q ss_pred CCcchhh
Q 012059 122 SGKTASF 128 (472)
Q Consensus 122 sGKT~~~ 128 (472)
+|||+.+
T Consensus 128 tGKT~la 134 (357)
T 3d8b_A 128 TGKTLIG 134 (357)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 9999853
No 285
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=75.82 E-value=1.5 Score=41.57 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=17.7
Q ss_pred hhHhcCCc--EEEEccCCCCcchhh
Q 012059 106 PSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 106 ~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
..++.|.| ++.-|+||||||.+.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34567776 667889999999864
No 286
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=75.78 E-value=1.5 Score=40.77 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=18.3
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-|+||||||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344567877 677889999999864
No 287
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=75.76 E-value=1.6 Score=40.87 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=18.2
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-|+||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344567876 677899999999864
No 288
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=75.75 E-value=1.5 Score=40.94 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=18.3
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++..|+||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 444567876 667889999999864
No 289
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=75.69 E-value=1.5 Score=40.73 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.0
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++.-|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666778887 666889999999875
No 290
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=75.68 E-value=3.9 Score=44.93 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=40.2
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHhhhhhc--ccCCCCCceEEEEcCCHHHHHHHHHHHHHH
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCANIRLH--HSQNQKNPLAMVLTPTRELCIQVEEQAKLL 172 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 172 (472)
..+|.|.-|||||.+...-++..+...+.. ....-....+|+|+=|++-|.++.+.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999997666566655531100 000112357999999999988887776653
No 291
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=75.66 E-value=1.9 Score=40.16 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=27.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 161 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L 161 (472)
.|.-++|.+|+|+|||.. ++.++..+.. .+..++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~---------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQK---------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHH---------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh---------cCCeEEEEeccccc
Confidence 356689999999999984 4444443322 24558887754433
No 292
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.64 E-value=1.7 Score=41.33 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.8
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++.-|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4566778877 666889999999875
No 293
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=75.61 E-value=0.57 Score=42.06 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=25.8
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHH-HHHHhhH--hcCCcEEEEccCCCCcchh
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQ-MQAIPSA--LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q-~~~i~~~--~~~~~~iv~a~TGsGKT~~ 127 (472)
|..+|++.+-.+.+.+.+...- ..|+. .+++..+ .-.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4567888876666666665420 01111 1222221 1224499999999999983
No 294
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=75.59 E-value=1.4 Score=41.04 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=18.3
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-|+||||||.+.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 444567876 667889999999864
No 295
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.41 E-value=1.6 Score=37.11 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.|.-+.|.||+|||||+ ++-++..++
T Consensus 21 ~g~~v~I~G~sGsGKST--l~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST--LSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHHH
Confidence 34568899999999998 333444333
No 296
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.32 E-value=1.3 Score=38.98 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
..+.+++.||+|+|||..+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999843
No 297
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=75.01 E-value=2.2 Score=41.41 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.++++++.||+|+|||..+
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 3468999999999999854
No 298
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.96 E-value=1.1 Score=39.62 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=29.7
Q ss_pred CcccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh--cCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~--~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|+++.-.+.....+...-.. . -...++..+- -.+.+++.+|+|+|||+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 3456788876666665555432100 0 0012222221 124599999999999984
No 299
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=74.83 E-value=1.7 Score=40.23 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=18.1
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhh
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
+..++.|.| ++.-++||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344557877 667889999999864
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=74.65 E-value=1.2 Score=37.26 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 301
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=74.61 E-value=3.5 Score=40.40 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+.+++|.++||||||.+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999853
No 302
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.40 E-value=1.1 Score=39.51 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
.+.+++.||+|+|||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35699999999999984
No 303
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=74.37 E-value=1.9 Score=40.21 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
|.-+.+.+|+|+|||+. +..+..++
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 34488999999999984 44444443
No 304
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=74.37 E-value=8.8 Score=34.65 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=48.8
Q ss_pred CCCEEEEECCchhHHHHHHHHhhh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----c-ccCCCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVT----TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----G-RGVELL 388 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~-~Gidi~ 388 (472)
..++||.++++..+..++..+... .+..+..++|+...... .....+|+|+|.- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999987777632 24667777777653221 1346789999972 2 1 356777
Q ss_pred CCcEEEEec
Q 012059 389 GVRQVIIFD 397 (472)
Q Consensus 389 ~~~~VI~~~ 397 (472)
++++||.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 888888643
No 305
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=74.35 E-value=1.8 Score=36.82 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=19.0
Q ss_pred hHhcCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 107 SALSGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 107 ~~~~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.+..|+-+.+.+|.|+|||+ ++-++..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKST--Ll~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST--VVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH--HHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHH--HHHHHHhh
Confidence 45678889999999999998 34444333
No 306
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=74.30 E-value=1.5 Score=41.10 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.2
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678877 666889999999864
No 307
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=74.23 E-value=1.6 Score=40.99 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=17.6
Q ss_pred hhHhcCCc--EEEEccCCCCcchhh
Q 012059 106 PSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 106 ~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
..++.|.| ++.-|+||||||.+.
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34557776 667889999999864
No 308
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=73.91 E-value=1.7 Score=36.25 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
+-+.+.||+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999983
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=73.88 E-value=1.5 Score=36.37 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
+..+++.|++|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999984
No 310
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.83 E-value=1.8 Score=39.48 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.+.++++.|++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 567899999999999984
No 311
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=73.55 E-value=2.1 Score=38.97 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
+-+++.+++|+|||+..
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 44788999999999853
No 312
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=73.54 E-value=1.8 Score=40.68 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=18.7
Q ss_pred HhhHhcCCc--EEEEccCCCCcchhhH
Q 012059 105 IPSALSGKS--LLVSANTGSGKTASFL 129 (472)
Q Consensus 105 i~~~~~~~~--~iv~a~TGsGKT~~~~ 129 (472)
+..++.|.| ++.-|+||||||.+..
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 344567776 6678899999998753
No 313
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.48 E-value=14 Score=34.53 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=53.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHhc-CCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++.-+..+++.+... ++.+..++|+....+... .+.. ...|+|+|. ....++++.+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccC
Confidence 3468999999999999888888876 356778888776544332 2333 478999993 2345678889
Q ss_pred eeEEEEec
Q 012059 224 IRMFVLDE 231 (472)
Q Consensus 224 ~~~iVvDE 231 (472)
+++||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888644
No 314
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=73.43 E-value=2.3 Score=35.28 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+..+++.|++|||||+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456889999999999843
No 315
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=73.39 E-value=9.5 Score=36.62 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=55.3
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhhcCC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccc-----cCCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVTTGM---KALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGR-----GVELLG 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~-----Gidi~~ 389 (472)
.+.++||.|+++..+...++.+.+..+. .+..+||+....++..... ..+|+|+|. .+.. .+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4568999999999999999988866566 8999999998876654433 367999996 2221 356677
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 126 ~~~vIiDE 133 (494)
T 1wp9_A 126 VSLIVFDE 133 (494)
T ss_dssp CSEEEEET
T ss_pred ceEEEEEC
Confidence 88888643
No 316
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.38 E-value=1.5 Score=40.27 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.9
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.++|+||||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999853
No 317
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=73.36 E-value=2.9 Score=38.88 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=25.2
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
.|+-+++.+++|+|||..++. ++..+.. .+..++++.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~-la~~~~~---------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALH-AVANAQA---------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHh---------CCCeEEEEECC
Confidence 456799999999999985433 3333322 24557777643
No 318
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=73.34 E-value=1.5 Score=35.67 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=13.7
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.|++|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 319
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.27 E-value=14 Score=34.71 Aligned_cols=73 Identities=8% Similarity=0.174 Sum_probs=52.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCCe
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDI 224 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~ 224 (472)
..++||.|+++.-+..+++.+... ++.+..++|+....+... .+. ....|+|+|. ....++++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccC
Confidence 357999999999999888877764 466788888876554332 233 3578999993 33466788999
Q ss_pred eEEEEec
Q 012059 225 RMFVLDE 231 (472)
Q Consensus 225 ~~iVvDE 231 (472)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988644
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=73.18 E-value=1.2 Score=36.56 Aligned_cols=16 Identities=31% Similarity=0.357 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-+++.|++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999843
No 321
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.18 E-value=1.7 Score=41.25 Aligned_cols=26 Identities=42% Similarity=0.585 Sum_probs=20.1
Q ss_pred HHHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 103 QAIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 103 ~~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
..+..++.|.| ++..|+||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35566778877 666889999999864
No 322
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=73.15 E-value=1.5 Score=41.21 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=17.2
Q ss_pred hHhcCCc--EEEEccCCCCcchhh
Q 012059 107 SALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 107 ~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.++.|.| ++.-|+||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3557776 666899999999864
No 323
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.11 E-value=3 Score=38.86 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCC
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 158 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt 158 (472)
.|+-+++.+++|+|||..++- ++..+.. .+..++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~-la~~~~~---------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQ-VIAAAQR---------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHHHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHH---------CCCeEEEEeCC
Confidence 456799999999999985443 3333322 23457877753
No 324
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=73.00 E-value=1.7 Score=36.63 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|.-+++.|+.|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466799999999999984
No 325
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=72.84 E-value=2 Score=41.31 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=17.7
Q ss_pred hhHhcCCc--EEEEccCCCCcchhh
Q 012059 106 PSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 106 ~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
..++.|-| ++.-|+||||||.++
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34457876 677889999999874
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=72.64 E-value=2.1 Score=35.43 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999983
No 327
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=72.62 E-value=9.2 Score=35.21 Aligned_cols=75 Identities=12% Similarity=0.263 Sum_probs=52.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++.-+..+++.++.. +..+..++|+....+... .+. ...+|+|+|. .+. .++++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 4567999999999999888888775 467788888766544332 233 3478999993 332 3456778
Q ss_pred eeEEEEecc
Q 012059 224 IRMFVLDEV 232 (472)
Q Consensus 224 ~~~iVvDE~ 232 (472)
+++||.-+.
T Consensus 307 ~~~Vi~~~~ 315 (367)
T 1hv8_A 307 LNCVINYHL 315 (367)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEecC
Confidence 888886543
No 328
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.61 E-value=1.2 Score=36.66 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|.-+.+.||.|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456688999999999984
No 329
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=72.55 E-value=13 Score=35.53 Aligned_cols=71 Identities=10% Similarity=0.192 Sum_probs=52.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeE
Q 012059 151 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRM 226 (472)
Q Consensus 151 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~ 226 (472)
.+||.|+++.-+..+++.+... ++.+..++|+....+... .+.. ...|+|||. +...++++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 3999999999999888877764 467888888876554433 2333 488999994 3346678889998
Q ss_pred EEEec
Q 012059 227 FVLDE 231 (472)
Q Consensus 227 iVvDE 231 (472)
||.-+
T Consensus 372 VI~~d 376 (434)
T 2db3_A 372 VINYD 376 (434)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88643
No 330
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=72.51 E-value=2 Score=40.32 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=19.3
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++.-++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556678877 666889999999864
No 331
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.41 E-value=1.5 Score=38.24 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|||||+ ++-++.
T Consensus 30 ~Ge~~~iiG~nGsGKST--Ll~~l~ 52 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST--MLNIIG 52 (235)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 67779999999999998 444444
No 332
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=72.23 E-value=4.7 Score=35.02 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----ccc---cCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-----LGR---GVEL 387 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~---Gidi 387 (472)
.+.++||.++++..+..+++.+.+. .+..+..++|+..... .......+..+|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4557999999999999998888732 2566666665432111 111223457889999951 112 4778
Q ss_pred CCCcEEEEec
Q 012059 388 LGVRQVIIFD 397 (472)
Q Consensus 388 ~~~~~VI~~~ 397 (472)
.++++||.-.
T Consensus 174 ~~~~~lViDE 183 (245)
T 3dkp_A 174 ASVEWLVVDE 183 (245)
T ss_dssp TTCCEEEESS
T ss_pred ccCcEEEEeC
Confidence 8888888643
No 333
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.79 E-value=1.6 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
+..+++.|+.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45689999999999984
No 334
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.73 E-value=1.7 Score=40.15 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.8
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-++|.||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999854
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=71.56 E-value=1.3 Score=36.62 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.|..+++.|++|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999853
No 336
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=71.53 E-value=2.2 Score=36.66 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=16.0
Q ss_pred HhcCCcEEEEccCCCCcchh
Q 012059 108 ALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~ 127 (472)
...|+-+++.||.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34677899999999999983
No 337
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=71.51 E-value=1.6 Score=39.43 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999984
No 338
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.44 E-value=2 Score=40.46 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
...++++.||+|+|||..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3568999999999999853
No 339
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=71.36 E-value=2.3 Score=38.67 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|+-+.|.+|+|+|||+ ++-++..+
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhh
Confidence 77889999999999998 44444444
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=71.31 E-value=1.9 Score=35.10 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCcchhhH
Q 012059 112 KSLLVSANTGSGKTASFL 129 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~ 129 (472)
+++++.++.|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998543
No 341
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=71.25 E-value=2.3 Score=37.48 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|+.+++.|++|||||+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TTCCEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 489999999999999984
No 342
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.03 E-value=7.2 Score=33.16 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCCCEEEEECCchhHHHHHHHHhh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc------cccCCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL------GRGVELLG 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~ 389 (472)
.+.++||.++++..+..+++.+.. ..+..+..++|+.+..++... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888887763 236788889998775443322 22 37899999621 23466777
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 88888643
No 343
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.01 E-value=1.4 Score=39.37 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=29.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHhhHh--cCCcEEEEccCCCCcchh
Q 012059 72 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL--SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 72 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~~~--~~~~~iv~a~TGsGKT~~ 127 (472)
+..+|+++.-.+...+.+...-.. .. ...++..+- -.+.+++.+|+|+|||+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 456788877666666655432110 00 011222211 124599999999999984
No 344
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=70.96 E-value=2 Score=37.19 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=12.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..|+-+.+.||+|+|||+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677789999999999984
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.80 E-value=2.8 Score=35.05 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCCeeEEEEeccchhh--hcCcHHHHHHHHHhCCCCceEeecccc
Q 012059 221 LDDIRMFVLDEVDCML--QRGFRDQVMQIFRAISLPQILMYSATI 263 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~--~~~~~~~~~~i~~~~~~~~~i~~SAT~ 263 (472)
..+.+++|+||+..+- +..+...+..++.. ...+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC--SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC--CCcEEEEEeec
Confidence 4667899999987763 33355666666553 22345435554
No 346
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.46 E-value=2.6 Score=41.05 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=16.9
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.-+.+.|++|+|||+. +..+..++
T Consensus 294 eVI~LVGpNGSGKTTL--l~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT--IGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEEECCCcccHHHH--HHHHHHHh
Confidence 3488899999999984 34444443
No 347
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=70.45 E-value=5.1 Score=39.77 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=18.9
Q ss_pred CCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 111 GKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
..+++|.+.||||||.+ +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 35799999999999985 444444443
No 348
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=70.41 E-value=4.1 Score=35.43 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 012059 109 LSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~ 128 (472)
..|.-+.+.+|+|+|||+.+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHH
Confidence 36778999999999999843
No 349
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.30 E-value=2.3 Score=36.00 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=13.6
Q ss_pred EEEEccCCCCcchhhH
Q 012059 114 LLVSANTGSGKTASFL 129 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~ 129 (472)
.++.|++|||||+.+.
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 6899999999998543
No 350
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=70.30 E-value=1.8 Score=36.49 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|.-+.+.|++|||||+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566788999999999984
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.24 E-value=3.4 Score=33.79 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=12.7
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 377899999999983
No 352
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.00 E-value=3.9 Score=48.52 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHH-HH---hhHhcCCcEEEEccCCCCcchhhHH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQ-AI---PSALSGKSLLVSANTGSGKTASFLV 130 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~-~i---~~~~~~~~~iv~a~TGsGKT~~~~l 130 (472)
+...+.+.+.+.|+ .+.+.+.. ++ ..+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 44556667777787 45555533 32 2233667899999999999986543
No 353
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.66 E-value=3.8 Score=37.10 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999853
No 354
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=69.62 E-value=1.5 Score=36.58 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+.-+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999843
No 355
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=69.48 E-value=2.9 Score=38.31 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
++-+.+.+++|+|||++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999853
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=69.47 E-value=2.8 Score=33.47 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999984
No 357
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=69.22 E-value=6.4 Score=36.99 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=21.2
Q ss_pred HHHHHhhHh---cCCcEEEEccCCCCcchh
Q 012059 101 QMQAIPSAL---SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 101 Q~~~i~~~~---~~~~~iv~a~TGsGKT~~ 127 (472)
=.++|..++ .|+.+.+.+|+|+|||..
T Consensus 161 GiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 161 TARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp HHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred cceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 345555554 789999999999999984
No 358
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=69.07 E-value=2 Score=40.63 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-++|.||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3788999999999753
No 359
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=68.91 E-value=25 Score=25.64 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=66.4
Q ss_pred EEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc--ccccC-----CCCCCcEEEE
Q 012059 323 AVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI--LGRGV-----ELLGVRQVII 395 (472)
Q Consensus 323 ~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~--~~~Gi-----di~~~~~VI~ 395 (472)
.+||.+.-+....+...++ ..|..+..++++.+.+.|.+-++.|.....++--..+- +.+.| -.|.++.|++
T Consensus 5 fvvfssdpeilkeivreik-rqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvi 83 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIK-RQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVI 83 (162)
T ss_dssp EEEEESCHHHHHHHHHHHH-HTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEecCCHHHHHHHHHHHH-hCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4677777777788888887 77999999999999988888899997655444322221 11111 1355666655
Q ss_pred ecCCC--CHhHHHHhhcccccCCCcceEEEEEcCCChHHHHHHHHHHHHcCC
Q 012059 396 FDMPN--SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGA 445 (472)
Q Consensus 396 ~~~p~--s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 445 (472)
..... =+.+|+.-.-- - .-.+++.+++.+...-++..+-....|.
T Consensus 84 vttddkewikdfieeake---r--gvevfvvynnkdddrrkeaqqefrsdgv 130 (162)
T 2l82_A 84 VTTDDKEWIKDFIEEAKE---R--GVEVFVVYNNKDDDRRKEAQQEFRSDGV 130 (162)
T ss_dssp EECCCHHHHHHHHHHHHH---T--TCEEEEEEECSCHHHHHHHHHHHCCSSC
T ss_pred EecCcHHHHHHHHHHHHh---c--CcEEEEEecCCCchhHHHHHHHhhhcCc
Confidence 44322 12333332211 0 1245666666665555444444444343
No 360
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=68.90 E-value=11 Score=36.06 Aligned_cols=67 Identities=4% Similarity=0.017 Sum_probs=46.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcCCCCCCCeeEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMF 227 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~i 227 (472)
+.++||++|++.-++.+++.++.. +..+..++|+ ........+. ...+|+||| +.+. .+++++ ...|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT-----~v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITT-----DISE-MGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEEC-----GGGG-TSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEEC-----chHH-cCcccC-CcEE
Confidence 457999999999999888888776 4677777765 3334444444 358999999 4443 445665 5554
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=68.88 E-value=2.6 Score=34.70 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=16.5
Q ss_pred cEEEEccCCCCcchhhHHHHHHHHh
Q 012059 113 SLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
-.+|.+|+|+|||. ++-++..++
T Consensus 28 ~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHH--HHHHHHHHT
T ss_pred cEEEECCCCCCHHH--HHHHHHHHH
Confidence 57899999999998 344444443
No 362
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.87 E-value=3.6 Score=45.23 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=26.7
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 160 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~ 160 (472)
-+|.|..|||||.+.+--+...+.. ...+.++|++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~-------~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRR-------APFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHH-------CTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-------CCCCCcEEEEecCcc
Confidence 4788999999999754444433322 123467999999764
No 363
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.87 E-value=4.3 Score=48.79 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHhh----HhcCCcEEEEccCCCCcchhhH
Q 012059 81 LSQKLLQNIEAAGYDMPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 81 l~~~i~~~l~~~g~~~~~~~Q~~~i~~----~~~~~~~iv~a~TGsGKT~~~~ 129 (472)
|...+.+.+.+.|+ .+.+.+..-+-. +.....+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 44566667778888 455555433322 2355679999999999999754
No 364
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.86 E-value=1.8 Score=38.98 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.-++++||+|||||+.+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999843
No 365
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=68.83 E-value=4.2 Score=38.04 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=26.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
.|+-++|.+++|+|||.. ++.++..+.. .+..++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~~---------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQK---------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHHH---------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHHH---------CCCeEEEEECCC
Confidence 456799999999999974 4444444332 234577777543
No 366
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=68.83 E-value=2.6 Score=35.74 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
+.-+.+.||+|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44578899999999983
No 367
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=68.70 E-value=2.5 Score=34.65 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
+.+++.+++|||||+.+
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999854
No 368
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.41 E-value=1.5 Score=40.70 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
...++++.||+|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 345799999999999984
No 369
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=68.39 E-value=2.1 Score=37.67 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|||||+ ++-++.
T Consensus 34 ~Ge~~~i~G~nGsGKST--Ll~~l~ 56 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST--LTKLIQ 56 (247)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67789999999999998 444443
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=68.35 E-value=2.4 Score=35.31 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+..+++.|++|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.27 E-value=7.8 Score=35.42 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=15.8
Q ss_pred EEEEccCCCCcchhhHHHHHHHHh
Q 012059 114 LLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
+.+.||+|||||+. +-.+..++
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHh
Confidence 77899999999984 34444443
No 372
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=67.99 E-value=3.7 Score=37.59 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.5
Q ss_pred EEEEccCCCCcchh
Q 012059 114 LLVSANTGSGKTAS 127 (472)
Q Consensus 114 ~iv~a~TGsGKT~~ 127 (472)
++|.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 78899999999983
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=67.86 E-value=2.3 Score=35.77 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.-+++.|++|||||+.+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999843
No 374
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=67.60 E-value=2.1 Score=35.55 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+..+++.|++|||||+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 375
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.33 E-value=2.9 Score=35.48 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred CHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 98 TPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 98 ~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
++.++... .+..+..+++.|++|||||+.
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHH
Confidence 34444442 344667789999999999984
No 376
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=67.12 E-value=1.4 Score=40.08 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|+-+.+.+|+|||||+ ++-++..+
T Consensus 79 ~Ge~vaivG~sGsGKST--Ll~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST--ILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHH--HHHHHTTS
T ss_pred CCCEEEEECCCCchHHH--HHHHHHcC
Confidence 67889999999999998 44444433
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=67.09 E-value=2.8 Score=35.24 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.+..+++.|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356689999999999984
No 378
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=67.06 E-value=2.6 Score=37.45 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|||||+ ++-++.
T Consensus 36 ~Ge~~~liG~nGsGKST--Ll~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST--LLRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 67789999999999998 444443
No 379
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=67.06 E-value=6.6 Score=37.92 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.8
Q ss_pred HhcCCcEEEEccCCCCcchhh
Q 012059 108 ALSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 108 ~~~~~~~iv~a~TGsGKT~~~ 128 (472)
+.+|+.+++.++.|.|||...
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHH
T ss_pred hccCCEEEEECCCCCCccHHH
Confidence 348889999999999999843
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=67.03 E-value=2.9 Score=34.44 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
..+++.+++|||||+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999854
No 381
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=67.03 E-value=2.2 Score=38.14 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|||||+ ++-++.
T Consensus 33 ~Ge~~~iiGpnGsGKST--Ll~~l~ 55 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST--LFQNFN 55 (275)
T ss_dssp TTSEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHH
Confidence 67779999999999998 444443
No 382
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=67.02 E-value=2.1 Score=35.26 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=11.0
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+.-+++.|++|||||+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999853
No 383
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=70.31 E-value=1.2 Score=36.59 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHH---HHh-cCCCEEEeChHHHHHHHHcCCCCCCC
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDD 223 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~ 223 (472)
.+.++||.++++..+..+.+.+... ++.+..++|+....+... .+. ....|+|+| +.+ ..++++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVA-ARGIDIPD 98 (170)
Confidence 3467999999999988877777664 456777777755433222 222 246799998 333 34456777
Q ss_pred eeEEEEec
Q 012059 224 IRMFVLDE 231 (472)
Q Consensus 224 ~~~iVvDE 231 (472)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77777644
No 384
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=66.94 E-value=9.6 Score=38.91 Aligned_cols=69 Identities=3% Similarity=0.042 Sum_probs=47.6
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 227 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~i 227 (472)
+.++||+||++.-++.+++.++.. ++.+..++|. ........+.. ..+|+|+| +.+ ...+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~-e~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DIS-EMGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGG-GTTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chh-hcceeeC-CcEE
Confidence 567999999999998887777654 5677777773 33333344443 47899999 444 4455677 7776
Q ss_pred EE
Q 012059 228 VL 229 (472)
Q Consensus 228 Vv 229 (472)
|.
T Consensus 478 I~ 479 (673)
T 2wv9_A 478 ID 479 (673)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=66.74 E-value=2.8 Score=35.85 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+..+++.|++|||||+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 386
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=66.71 E-value=1.4 Score=39.18 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999853
No 387
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=66.61 E-value=2.6 Score=36.07 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|+|||+ ++-++.
T Consensus 34 ~Ge~~~iiG~NGsGKST--Llk~l~ 56 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT--LLKTIS 56 (214)
T ss_dssp TTCCEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67889999999999998 444443
No 388
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=66.46 E-value=2.1 Score=37.47 Aligned_cols=24 Identities=13% Similarity=0.439 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQ 135 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~ 135 (472)
.|+-+.+.+|.|||||+ ++-++.-
T Consensus 27 ~Ge~~~i~G~nGsGKST--Ll~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST--IFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHH--HHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhc
Confidence 66779999999999998 4444433
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=66.27 E-value=3 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
...+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999853
No 390
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.18 E-value=2.6 Score=35.83 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.7
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.|++|||||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 391
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.18 E-value=2.4 Score=36.60 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 29 ~Ge~~~iiG~nGsGKST--Ll~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST--LLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 66778899999999998 444443
No 392
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=66.15 E-value=2.8 Score=35.62 Aligned_cols=20 Identities=35% Similarity=0.247 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCcchhhH
Q 012059 110 SGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~ 129 (472)
.|.-+++.+++|+|||..+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45678999999999998433
No 393
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=66.08 E-value=2.5 Score=36.66 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|+|||+ ++-++.
T Consensus 33 ~Ge~~~i~G~nGsGKST--Ll~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS--LLMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67789999999999998 444443
No 394
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.05 E-value=2.8 Score=38.71 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999984
No 395
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=66.01 E-value=3 Score=34.56 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=23.4
Q ss_pred EEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCHHHHHHHHHHHHH
Q 012059 114 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 171 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 171 (472)
++|.+++|||||.-+. -+. . . +..+++++.....-..+.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~-~la----~--------~-~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-ALI----G--------D-APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHH-HHH----C--------S-CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHH-HHH----h--------c-CCCeEEEecCCCCCHHHHHHHHH
Confidence 6899999999997332 221 1 1 34578888755433333333333
No 396
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=65.99 E-value=3.2 Score=33.57 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|.-+.+.+|.|+|||+ ++-++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHh
Confidence 56678899999999998 44444443
No 397
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=65.95 E-value=2.7 Score=34.86 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=13.5
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
.-+++.+|+|+|||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3478899999999984
No 398
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=65.77 E-value=4.4 Score=34.09 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=13.6
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
.-+.+.|+.|||||+.
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4488899999999984
No 399
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=65.39 E-value=1.9 Score=36.53 Aligned_cols=19 Identities=32% Similarity=0.172 Sum_probs=15.5
Q ss_pred hcCCcEEEEccCCCCcchh
Q 012059 109 LSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~ 127 (472)
..+.-+.+.|++|||||+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCEEEEEEESTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455688999999999984
No 400
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=65.37 E-value=3.2 Score=38.63 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=15.6
Q ss_pred cCCc--EEEEccCCCCcchhh
Q 012059 110 SGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~--~iv~a~TGsGKT~~~ 128 (472)
.|.+ ++.-|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 688999999999864
No 401
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.25 E-value=2.9 Score=35.95 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+..+++.|++|||||+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999843
No 402
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=65.23 E-value=2.6 Score=37.64 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQ 135 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~ 135 (472)
.|+-+.|.+|.|||||+ ++-++.-
T Consensus 44 ~Ge~~~i~G~nGsGKST--Llk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST--VAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhc
Confidence 67789999999999998 4444443
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=65.22 E-value=3.2 Score=33.72 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
+.+++.+++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999853
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=65.10 E-value=2.9 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.7
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.|++|||||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 405
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=65.02 E-value=2.6 Score=37.23 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 32 ~Ge~~~liG~nGsGKST--Llk~l~ 54 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST--LINVIT 54 (257)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67779999999999998 444443
No 406
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=65.01 E-value=3.6 Score=41.55 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.0
Q ss_pred hHhcCCcEEEEccCCCCcchh
Q 012059 107 SALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 107 ~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.+..++.+++.+|+|+|||+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 344788999999999999984
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.84 E-value=2.7 Score=36.73 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 31 ~Ge~~~l~G~nGsGKST--Ll~~l~ 53 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT--TLSAIA 53 (240)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67778999999999998 444443
No 408
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=64.74 E-value=3 Score=35.45 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.4
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.||+||||++.+
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999854
No 409
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=64.73 E-value=2.7 Score=37.30 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 31 ~Ge~~~liG~nGsGKST--Llk~l~ 53 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST--FLRCIN 53 (262)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 66778999999999998 444443
No 410
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.67 E-value=5.7 Score=33.76 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCCEEEEECCchhHHHHHHHHhhhc-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-cCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVTT-------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGR-GVE 386 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gid 386 (472)
+.++||.++++..+..+++.+++.. +..+..++|+.+..+... .+ .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 4589999999999988888776322 577888888876433211 11 24678999996 2222 355
Q ss_pred CCCCcEEEEe
Q 012059 387 LLGVRQVIIF 396 (472)
Q Consensus 387 i~~~~~VI~~ 396 (472)
+..+++||.-
T Consensus 148 ~~~~~~lViD 157 (219)
T 1q0u_A 148 VHTAHILVVD 157 (219)
T ss_dssp GGGCCEEEEC
T ss_pred cCcceEEEEc
Confidence 6677777763
No 411
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=64.57 E-value=3.3 Score=34.76 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+..+++.|++|||||+.+
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999853
No 412
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=64.48 E-value=2.9 Score=34.60 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
.+++.|++|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999984
No 413
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=64.44 E-value=2.8 Score=34.43 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+++.++.|||||+.
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355688999999999984
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=64.43 E-value=2.7 Score=37.26 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQ 135 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~ 135 (472)
.|+-+.+.+|.|+|||+ ++-++.-
T Consensus 49 ~Gei~~liG~NGsGKST--Llk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST--FLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTT
T ss_pred CCCEEEEEcCCCCcHHH--HHHHHHc
Confidence 67779999999999998 4444443
No 415
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=64.34 E-value=5.8 Score=38.03 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCcchhhH
Q 012059 112 KSLLVSANTGSGKTASFL 129 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~ 129 (472)
+.+++.+++|+|||+.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998543
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=64.27 E-value=3.2 Score=35.91 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+..+++.|++|||||+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457999999999999853
No 417
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=64.11 E-value=3 Score=35.71 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
..+.+.|++|||||+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999843
No 418
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=63.93 E-value=3.1 Score=41.88 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=14.0
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 419
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.81 E-value=2.9 Score=36.96 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 40 ~Gei~~l~G~NGsGKST--Llk~l~ 62 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT--TLRIIS 62 (256)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCcEEEEECCCCCCHHH--HHHHHh
Confidence 67779999999999998 444443
No 420
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=63.80 E-value=3.1 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.8
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.|++|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999853
No 421
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=63.67 E-value=3.3 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+.-+++.|++|||||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3466899999999999853
No 422
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=63.46 E-value=25 Score=32.57 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=52.1
Q ss_pred CCCCEEEEECCchhHHHHHHHHhh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----cccCCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-L-----GRGVELLG 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gidi~~ 389 (472)
.+.++||.++++..+..+++.+.. ..+..+..++|+.+..+....+. ..+|+|+|.- + ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999888877763 24678889999998766554443 4679999952 1 22355667
Q ss_pred CcEEEEe
Q 012059 390 VRQVIIF 396 (472)
Q Consensus 390 ~~~VI~~ 396 (472)
+++||.-
T Consensus 163 ~~~vIiD 169 (394)
T 1fuu_A 163 IKMFILD 169 (394)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 7777763
No 423
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=63.37 E-value=3.1 Score=40.14 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=30.1
Q ss_pred CcccCcccCCCCHHHHHHHHHCC---CCCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 71 APILSFSSCSLSQKLLQNIEAAG---YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
.|..+|+++.-.+...+.|...- ...|..++ ......+.+++.||+|+|||+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHH
Confidence 45567888765666666554320 00000000 0112346799999999999984
No 424
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=63.31 E-value=3.3 Score=35.48 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
..+-+++.+|+||||++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp SCEEEEEECCTTCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3345788999999999854
No 425
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.02 E-value=3.6 Score=35.82 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|||||+ ++-++.
T Consensus 30 ~Ge~~~i~G~nGsGKST--Ll~~l~ 52 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS--LLSALL 52 (237)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67789999999999998 444443
No 426
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=62.92 E-value=3.5 Score=34.80 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+.-+++.|+.|||||+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4566899999999999853
No 427
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=62.49 E-value=17 Score=37.75 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=53.8
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHh-------cCCCCeEEEEEcCcchHHHHHHHh---------cCCCEEEeChHHHH
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLG-------KGLPFKTALVVGGDAMARQVYRIQ---------QGVELIVGTPGRLI 211 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~I~i~Tp~~l~ 211 (472)
.+..+||.+|++.-+..+++.+.... ...++.+..++|+....++...+. ....|+|||
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT----- 376 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST----- 376 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----
Confidence 35689999999999998888887522 234678888888887766544332 235799999
Q ss_pred HHHHcCCCCCCCeeEEEE
Q 012059 212 DLLMKHDIELDDIRMFVL 229 (472)
Q Consensus 212 ~~~~~~~~~~~~~~~iVv 229 (472)
+.+. ..+++.++.+||-
T Consensus 377 ~iae-~GidIp~v~~VId 393 (773)
T 2xau_A 377 NIAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp THHH-HTCCCTTEEEEEE
T ss_pred cHHH-hCcCcCCeEEEEe
Confidence 4444 3457888887764
No 428
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=62.37 E-value=3.1 Score=36.95 Aligned_cols=23 Identities=48% Similarity=0.884 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|||||+ ++-++.
T Consensus 32 ~Ge~~~liG~nGsGKST--Ll~~i~ 54 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST--LLQIVA 54 (266)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 67778999999999998 444443
No 429
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=61.99 E-value=3.2 Score=37.18 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 46 ~Ge~~~liG~NGsGKST--Llk~l~ 68 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT--LLNILN 68 (279)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 67779999999999998 444443
No 430
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.97 E-value=2.9 Score=40.89 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
..+.+++.||+|+|||+.+
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999853
No 431
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=61.96 E-value=3.3 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+.-+++.|+.|||||+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3456889999999999843
No 432
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=61.91 E-value=4.2 Score=38.08 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4779999999999843
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=61.88 E-value=3.8 Score=34.99 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+..+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999853
No 434
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=61.79 E-value=5.4 Score=38.76 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
...++++.||+|+|||..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 4468999999999999853
No 435
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=61.79 E-value=3.2 Score=35.61 Aligned_cols=18 Identities=33% Similarity=0.239 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 566799999999999984
No 436
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=61.69 E-value=3.9 Score=34.59 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchhh
Q 012059 110 SGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~ 128 (472)
.+.-+++.|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566899999999999853
No 437
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=61.66 E-value=3.6 Score=34.67 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+.+.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999843
No 438
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=61.53 E-value=4.1 Score=39.13 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
.+++++.+|+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999843
No 439
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=61.49 E-value=33 Score=33.49 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.9
Q ss_pred cEEEEccCCCCcchhhH
Q 012059 113 SLLVSANTGSGKTASFL 129 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~~ 129 (472)
.+++++++|+|||+.+.
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=61.20 E-value=2.3 Score=34.88 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.7
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
-+.+.+++|||||+.
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 441
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=61.15 E-value=3.7 Score=34.34 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
.+++.|++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378999999999984
No 442
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=61.07 E-value=4 Score=35.86 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.+..+.|.+|+|||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999984
No 443
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=60.98 E-value=4.1 Score=36.06 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|||||+ ++-++.
T Consensus 45 ~Ge~~~i~G~nGsGKST--Ll~~l~ 67 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST--IAKLLY 67 (260)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67889999999999998 444443
No 444
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=60.97 E-value=3.6 Score=35.03 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 445
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=60.89 E-value=3.9 Score=33.02 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.+++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999853
No 446
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=60.62 E-value=3.9 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.7
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.|++|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999853
No 447
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=60.46 E-value=12 Score=35.95 Aligned_cols=68 Identities=6% Similarity=0.045 Sum_probs=46.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHhc-CCCEEEeChHHHHHHHHcCCCCCCCeeEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMF 227 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~I~i~Tp~~l~~~~~~~~~~~~~~~~i 227 (472)
+.++||.+|++.-++++++.++.. ++.+..+++... ......+.. ..+|+||| +.+ ..++++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DIS-EMGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGG-GSSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHH-HhCcCCCC-CEE
Confidence 457999999999999888877654 466777766543 333333333 48999999 444 45567777 666
Q ss_pred E
Q 012059 228 V 228 (472)
Q Consensus 228 V 228 (472)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 6
No 448
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=60.44 E-value=4 Score=35.63 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=17.2
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.-+.+.||.|+|||+ ++-++.-+
T Consensus 25 e~~~liG~nGsGKST--Ll~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV--FLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHH--HHHHHHTS
T ss_pred EEEEEECCCCCCHHH--HHHHHhCC
Confidence 557899999999998 45555443
No 449
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=60.24 E-value=4.5 Score=37.91 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.1
Q ss_pred CcEEEEccCCCCcchhhHHHHHHH
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQ 135 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~ 135 (472)
.-.++.|+||+|||.. +-++..
T Consensus 26 gl~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHH--HHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHH
Confidence 3478999999999984 444443
No 450
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=60.14 E-value=3.9 Score=34.33 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999984
No 451
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=59.88 E-value=5.1 Score=33.81 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=17.2
Q ss_pred CcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 112 KSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
.-.+|.+|+|+|||.. +-++..++.
T Consensus 24 ~~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 3478899999999984 444444443
No 452
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=59.86 E-value=3.2 Score=36.71 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
.-++++|++|||||+.+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35889999999999853
No 453
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=59.65 E-value=6.3 Score=35.60 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchhhH
Q 012059 112 KSLLVSANTGSGKTASFL 129 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~~ 129 (472)
+-+++.+++|+|||+...
T Consensus 99 ~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEEECSSCSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357778999999998543
No 454
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=59.40 E-value=3 Score=36.67 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
..+++.|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999984
No 455
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=59.38 E-value=4.2 Score=33.68 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.0
Q ss_pred EEEEccCCCCcchhh
Q 012059 114 LLVSANTGSGKTASF 128 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~ 128 (472)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999853
No 456
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=59.33 E-value=4.7 Score=36.77 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHhh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCAN 138 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~~ 138 (472)
.|.-+.|.||.|||||+ ++-++..++.
T Consensus 89 ~g~ivgI~G~sGsGKST--L~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKST--TARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHH--HHHHHHhhcc
Confidence 34458889999999998 3444444443
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=59.18 E-value=4.1 Score=34.04 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+.|.+++|||||+..
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999853
No 458
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=59.09 E-value=4.5 Score=37.68 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|.-+.+.+|.|||||+ ++-++.-+
T Consensus 29 ~Ge~~~llGpsGsGKST--LLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTT--LLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHH--HHHHHHTS
T ss_pred CCCEEEEECCCCchHHH--HHHHHhcC
Confidence 56778899999999998 55555444
No 459
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=59.02 E-value=5.3 Score=36.96 Aligned_cols=51 Identities=10% Similarity=-0.048 Sum_probs=28.8
Q ss_pred HhhHh-----cCCcEEEEccCCCCcchhhHHHHHHHHhhhhhcccCCCCCceEEEEcCCH
Q 012059 105 IPSAL-----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 159 (472)
Q Consensus 105 i~~~~-----~~~~~iv~a~TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~~lil~Pt~ 159 (472)
+..++ .|.-+++.|++|+|||..++ -+...... .....+.+..++++.-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~-~la~~~~~---~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSH-TLCVTAQL---PGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHH-HHHHHTTS---CBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHH-HHHHHHhc---ccccCCCCCeEEEEECCC
Confidence 55555 34568999999999998433 33322111 000112356788887544
No 460
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.98 E-value=4.8 Score=41.90 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=34.1
Q ss_pred CCcccCcccCCCCHHHHHHHHHC-CC--CCCCHHHHHHHhhHhcCCcEEEEccCCCCcchh
Q 012059 70 PAPILSFSSCSLSQKLLQNIEAA-GY--DMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 70 p~~~~~~~~~~l~~~i~~~l~~~-g~--~~~~~~Q~~~i~~~~~~~~~iv~a~TGsGKT~~ 127 (472)
..|..+|++.+.-+...+.|... -+ ..|..++... +...+.+++.+|+|+|||+.
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 44567889888778888777654 12 1221111100 11236799999999999974
No 461
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=58.79 E-value=4.6 Score=44.88 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=20.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHHh
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQCA 137 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l~ 137 (472)
.|+.+.++|+||||||. ++-++.++.
T Consensus 1104 ~Ge~vaIVG~SGsGKST--L~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKST--VVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTS--HHHHHTTSS
T ss_pred CCCEEEEECCCCChHHH--HHHHHhcCc
Confidence 78889999999999998 455555443
No 462
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=58.55 E-value=4.4 Score=35.38 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchhh
Q 012059 111 GKSLLVSANTGSGKTASF 128 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~~ 128 (472)
+..+++.|++|||||+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446999999999999853
No 463
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=58.53 E-value=7.5 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCcchhh
Q 012059 112 KSLLVSANTGSGKTASF 128 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~~ 128 (472)
+-+.+.++.|+|||+..
T Consensus 99 ~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44777899999999853
No 464
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=58.39 E-value=4.5 Score=33.62 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=13.0
Q ss_pred EEEEccCCCCcchhh
Q 012059 114 LLVSANTGSGKTASF 128 (472)
Q Consensus 114 ~iv~a~TGsGKT~~~ 128 (472)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 465
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=58.38 E-value=5.9 Score=39.72 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=19.6
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|+-+.+.||+|||||+ ++-++..+
T Consensus 368 ~G~~~~ivG~sGsGKST--ll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKST--IANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 77889999999999998 44555443
No 466
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.33 E-value=21 Score=33.53 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-cCCCCC
Q 012059 319 FTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGR-GVELLG 389 (472)
Q Consensus 319 ~~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gidi~~ 389 (472)
.+.++||.++++..+..+++.+... .+..+..++|+...... .+.+..+..+|+|+|. .+.. .+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999988888877632 36677777887765433 3455567889999995 2222 355666
Q ss_pred CcEEEEe
Q 012059 390 VRQVIIF 396 (472)
Q Consensus 390 ~~~VI~~ 396 (472)
+++||.-
T Consensus 184 ~~~vViD 190 (414)
T 3eiq_A 184 IKMFVLD 190 (414)
T ss_dssp CCEEEEC
T ss_pred CcEEEEE
Confidence 7777763
No 467
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.20 E-value=3.4 Score=40.20 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCcchh
Q 012059 112 KSLLVSANTGSGKTAS 127 (472)
Q Consensus 112 ~~~iv~a~TGsGKT~~ 127 (472)
+.+++.+|+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999984
No 468
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=58.17 E-value=4.9 Score=35.03 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchh
Q 012059 111 GKSLLVSANTGSGKTAS 127 (472)
Q Consensus 111 ~~~~iv~a~TGsGKT~~ 127 (472)
+..+++.||.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45799999999999984
No 469
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=58.12 E-value=4.8 Score=37.41 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|.-+.+.+|.|||||+ ++-++.-+
T Consensus 40 ~Ge~~~llGpnGsGKST--LLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTT--ILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHHTS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhCC
Confidence 67778999999999998 55555444
No 470
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=58.12 E-value=4.8 Score=37.49 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|.-+.+.+|.|||||+ ++-++.-+
T Consensus 28 ~Ge~~~llGpnGsGKST--LLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTT--TLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHHTS
T ss_pred CCCEEEEEcCCCchHHH--HHHHHHCC
Confidence 56778899999999998 55555544
No 471
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=58.01 E-value=26 Score=35.34 Aligned_cols=68 Identities=6% Similarity=0.072 Sum_probs=47.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEcCcchHHHHHHHh-cCCCEEEeChHHHHHHHHcCCCCCCCeeEE
Q 012059 149 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMF 227 (472)
Q Consensus 149 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~I~i~Tp~~l~~~~~~~~~~~~~~~~i 227 (472)
+.++||.++++.-++.+++.++.. ++.+..++|. ...+....+. ...+|+||| +.+ ...+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaT-----dv~-~rGiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTT-----DIS-EMGANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEEC-----GGG-GTTCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEEC-----cHH-HcCcccC-ceEE
Confidence 457999999999999888888775 4567777764 3444444444 358899999 444 3455664 7776
Q ss_pred E
Q 012059 228 V 228 (472)
Q Consensus 228 V 228 (472)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 472
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=57.98 E-value=21 Score=35.09 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=48.6
Q ss_pred CCCEEEEECCchhHHHHHHHHhhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-cc----cc-C-CCCC
Q 012059 320 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LG----RG-V-ELLG 389 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~----~G-i-di~~ 389 (472)
+.++||.++++..+...+..+... .+..+..++|+.+...+...+. ...+|+|+|.- +. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888777632 3889999999987654432221 23779999972 22 22 3 5677
Q ss_pred CcEEEEec
Q 012059 390 VRQVIIFD 397 (472)
Q Consensus 390 ~~~VI~~~ 397 (472)
+++||.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88888743
No 473
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=57.96 E-value=7.8 Score=31.78 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=12.9
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
-+++.++.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999973
No 474
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=57.73 E-value=5.3 Score=35.46 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 45 ~Ge~~~l~G~NGsGKST--Llk~l~ 67 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST--LSATLA 67 (267)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67789999999999998 444444
No 475
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=57.66 E-value=4.6 Score=34.63 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=57.62 E-value=5.4 Score=35.01 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|+-+.+.+|.|+|||+ ++-++.
T Consensus 28 ~Ge~~~l~G~nGsGKST--Llk~l~ 50 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST--LGKILA 50 (250)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67778999999999998 444444
No 477
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=57.46 E-value=5 Score=37.66 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=21.4
Q ss_pred CeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 223 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 223 ~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
+.+++++||-=.-+|......+...+..+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 45689999988777766666676666665
No 478
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=57.45 E-value=5.8 Score=35.70 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.8
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
-+.|.|++|||||+.
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 377899999999984
No 479
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=57.41 E-value=4.9 Score=33.66 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.4
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+.+.|++|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999854
No 480
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=57.31 E-value=5.2 Score=35.11 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 25 ~Ge~~~liG~NGsGKST--Llk~l~ 47 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST--LLARMA 47 (249)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 67778999999999998 444443
No 481
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=56.88 E-value=5.2 Score=37.31 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
..+.+++++||-=.-+|......+...+..+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4567799999998888777677777777666
No 482
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=56.25 E-value=4.6 Score=33.17 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCCcchhhH
Q 012059 110 SGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~ 129 (472)
.|+-+++.++.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 56779999999999997543
No 483
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=56.23 E-value=5.4 Score=37.36 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 221 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 221 ~~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
..+.+++++||--.-+|......+...+..+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 4456789999988777766666666666665
No 484
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=56.16 E-value=8.3 Score=34.80 Aligned_cols=15 Identities=53% Similarity=0.758 Sum_probs=13.7
Q ss_pred cEEEEccCCCCcchh
Q 012059 113 SLLVSANTGSGKTAS 127 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~ 127 (472)
++++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999984
No 485
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.98 E-value=4.8 Score=41.34 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCCEEEEECCchhHHHH-HHHHhhhcC--CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccc-----------c
Q 012059 320 TPPAVVYVGSRLGADLL-SNAISVTTG--MKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGR-----------G 384 (472)
Q Consensus 320 ~~~~lIf~~~~~~~~~l-~~~L~~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~-----------G 384 (472)
.+++||.++++.-+... ++.+++..+ +.+..++|+.+..++...+. +..+|+|+|. .+.. .
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 36899999999988888 887775444 78999999987554333222 5688999997 3332 2
Q ss_pred CCCCCCcEEEEe
Q 012059 385 VELLGVRQVIIF 396 (472)
Q Consensus 385 idi~~~~~VI~~ 396 (472)
+.+..+++||.-
T Consensus 132 ~~~~~~~lvViD 143 (699)
T 4gl2_A 132 VQLSDFSLIIID 143 (699)
T ss_dssp CCGGGCSEEEEE
T ss_pred eecccCcEEEEE
Confidence 456678888864
No 486
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=55.94 E-value=5.5 Score=35.03 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVIS 134 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~ 134 (472)
.|.-+.+.+|.|+|||+ ++-++.
T Consensus 30 ~Ge~~~l~G~nGsGKST--Ll~~l~ 52 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST--LLDLLL 52 (253)
T ss_dssp TTCEEEEECCSSSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67778999999999998 444443
No 487
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=55.84 E-value=5.6 Score=37.11 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|.-+.+.+|.|+|||+ ++-++..+
T Consensus 53 ~Gei~~IiGpnGaGKST--Llr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKST--LIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHHTS
T ss_pred CCCEEEEEcCCCchHHH--HHHHHhcC
Confidence 67779999999999998 45555444
No 488
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=55.47 E-value=10 Score=28.03 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCCCCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCC
Q 012059 318 HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP 356 (472)
Q Consensus 318 ~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 356 (472)
....++++||.+-..+...+..|. ..|+++..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~-~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLS-QLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHH-TTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHH-HcCCCEEEEcCcHH
Confidence 445689999999888999999998 77889999999864
No 489
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=55.37 E-value=4.2 Score=34.63 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
-+.+.++.|||||+..
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999843
No 490
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=55.28 E-value=5.7 Score=37.22 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCeeEEEEeccchhhhcCcHHHHHHHHHhC
Q 012059 222 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 251 (472)
Q Consensus 222 ~~~~~iVvDE~h~~~~~~~~~~~~~i~~~~ 251 (472)
.+.+++++||--.-+|......+...+..+
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 456789999988777776677777766665
No 491
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=55.18 E-value=6.5 Score=40.55 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.3
Q ss_pred HHhhHhcCCc--EEEEccCCCCcchhh
Q 012059 104 AIPSALSGKS--LLVSANTGSGKTASF 128 (472)
Q Consensus 104 ~i~~~~~~~~--~iv~a~TGsGKT~~~ 128 (472)
.+..++.|.| ++.-|+||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4566778877 566789999999864
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=55.02 E-value=5.1 Score=36.61 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhhH
Q 012059 110 SGKSLLVSANTGSGKTASFL 129 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~ 129 (472)
.++.+++.+|+|+|||..++
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668999999999998543
No 493
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=54.05 E-value=1.1e+02 Score=27.98 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.7
Q ss_pred cEEEEccCCCCcchhh
Q 012059 113 SLLVSANTGSGKTASF 128 (472)
Q Consensus 113 ~~iv~a~TGsGKT~~~ 128 (472)
.+.+++++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999843
No 494
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=53.71 E-value=5.7 Score=40.01 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQ 135 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~ 135 (472)
.|+-+.+.||+|||||+ ++-++..
T Consensus 380 ~G~~~~ivG~sGsGKST--ll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTT--IVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTH--HHHHHTT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhc
Confidence 67889999999999998 4444443
No 495
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=53.12 E-value=5.6 Score=39.92 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQC 136 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~l 136 (472)
.|+-+.+.||+|||||+ ++-++..+
T Consensus 368 ~G~~~~ivG~sGsGKST--Ll~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKST--IASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHH--HHHHHTTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhhc
Confidence 67889999999999998 44444433
No 496
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=53.03 E-value=5.9 Score=39.86 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCCCcchhhHHHHHHH
Q 012059 110 SGKSLLVSANTGSGKTASFLVPVISQ 135 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~~~l~~~~~ 135 (472)
.|+-+.+.||+|||||+ ++-++..
T Consensus 369 ~G~~~~ivG~sGsGKST--Ll~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKST--VLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTH--HHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhc
Confidence 67889999999999998 4444443
No 497
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=52.98 E-value=24 Score=34.57 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcCCCCeEEEEEc--------CcchHH---HHHHHhc--CCCEEEeChHHHHHHH
Q 012059 148 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVG--------GDAMAR---QVYRIQQ--GVELIVGTPGRLIDLL 214 (472)
Q Consensus 148 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~--------g~~~~~---~~~~~~~--~~~I~i~Tp~~l~~~~ 214 (472)
.+.++||.++++.-+..+.+.+........+.+..++| +.+..+ ....+.. ..+|+|||. .
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~- 461 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----V- 461 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----C-
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----h-
Confidence 45779999999999999999988764322234444443 333222 2233443 478999993 2
Q ss_pred HcCCCCCCCeeEEEEec
Q 012059 215 MKHDIELDDIRMFVLDE 231 (472)
Q Consensus 215 ~~~~~~~~~~~~iVvDE 231 (472)
-..++++.++++||.=+
T Consensus 462 ~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 462 ADEGIDIAECNLVILYE 478 (555)
T ss_dssp TTCCEETTSCSEEEEES
T ss_pred hhcCCccccCCEEEEeC
Confidence 34566788888887633
No 498
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=52.53 E-value=13 Score=26.58 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCEEEEECCchhHHHHHHHHhhhcCCeEEEEcCCCC
Q 012059 321 PPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP 356 (472)
Q Consensus 321 ~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 356 (472)
.++++||.+-..+...+..|. ..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~-~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLE-AEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHH-HHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHH-HcCCcEEEEcccHH
Confidence 689999999888888898998 67888878888864
No 499
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=52.44 E-value=12 Score=32.31 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCCcchh
Q 012059 110 SGKSLLVSANTGSGKTAS 127 (472)
Q Consensus 110 ~~~~~iv~a~TGsGKT~~ 127 (472)
.|.-+++.|+.|||||+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 456688999999999984
No 500
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=52.39 E-value=4.8 Score=47.75 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.4
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 012059 109 LSGKSLLVSANTGSGKTASF 128 (472)
Q Consensus 109 ~~~~~~iv~a~TGsGKT~~~ 128 (472)
..++++++.||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 37789999999999999753
Done!