BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012060
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALS------NRQSDEPNPIFIDRDPDVF 66
V+LNVGG F TT T+ P S LY L + DE IDRDP F
Sbjct: 14 VRLNVGGTYFLTTRQTL-CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 67
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALS------NRQSDEPNPIFIDRDPDVF 66
V+LNVGG F TT T+ P S LY L + DE IDRDP F
Sbjct: 8 VRLNVGGTYFLTTRQTL-CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 61
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 11 DRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVF 66
+++ + + LNV G+ F+T +T++ PD+LL + +++ F DRDP+VF
Sbjct: 8 NKRQDELIVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVF 64
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 11 DRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVF 66
+++ + + LNV G+ F+T +T++ PD+LL + +++ F DRDP+VF
Sbjct: 30 NKRQDELIVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVF 86
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 11 DRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVF 66
+++ + + LNV G+ F+T +T++ PD+LL + +++ F DRDP+VF
Sbjct: 36 NKRQDELIVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVF 92
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 32.0 bits (71), Expect = 0.68, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVF 66
+ LNV G F+T T++ PD+LL + S R E F DRDPD+F
Sbjct: 2 IVLNVSGTRFQTWQDTLERY-PDTLLGS-SERDFFYHPETQQYFFDRDPDIF 51
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 201 RHVASAHWTDPSDP-RIYRATVTAIADSP-TTVFSSLVCPHKENSVLLIDKSTLQISSEI 258
RH+ W DP DP + YR D + +S+ C H E+ +S +I+ I
Sbjct: 162 RHMFHVAWVDPEDPYKGYRYLYLTPQDYKRVSALNSVHCEHVEDE----GESRYKITDII 217
Query: 259 GRQSGASSKNM 269
G++ G +N+
Sbjct: 218 GKEEGIGPENL 228
>pdb|3U1K|A Chain A, Crystal Structure Of Human Pnpase
pdb|3U1K|C Chain C, Crystal Structure Of Human Pnpase
pdb|3U1K|B Chain B, Crystal Structure Of Human Pnpase
pdb|3U1K|D Chain D, Crystal Structure Of Human Pnpase
Length = 630
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309
T++++SE+ +G+SS A G + +GV + SA+A A G V DP GE+
Sbjct: 430 TIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAI---GLVTKTDPEKGEI 485
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2
pdb|1T5A|B Chain B, Human Pyruvate Kinase M2
pdb|1T5A|C Chain C, Human Pyruvate Kinase M2
pdb|1T5A|D Chain D, Human Pyruvate Kinase M2
Length = 567
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 111 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 170
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 171 KKGATLKIT 179
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase
pdb|3SRF|A Chain A, Human M1 Pyruvate Kinase
pdb|3SRF|B Chain B, Human M1 Pyruvate Kinase
pdb|3SRF|D Chain D, Human M1 Pyruvate Kinase
pdb|3SRF|E Chain E, Human M1 Pyruvate Kinase
pdb|3SRF|F Chain F, Human M1 Pyruvate Kinase
pdb|3SRF|G Chain G, Human M1 Pyruvate Kinase
pdb|3SRF|H Chain H, Human M1 Pyruvate Kinase
Length = 551
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 95 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 154
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 155 KKGATLKIT 163
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2)
pdb|4B2D|A Chain A, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|B Chain B, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|C Chain C, Human Pkm2 With L-serine And Fbp Bound
Length = 548
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 92 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 151
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 152 KKGATLKIT 160
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 550
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 94 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 153
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 154 KKGATLKIT 162
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|B Chain B, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|C Chain C, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|D Chain D, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRH|A Chain A, Human M2 Pyruvate Kinase
pdb|3SRH|B Chain B, Human M2 Pyruvate Kinase
pdb|3SRH|C Chain C, Human M2 Pyruvate Kinase
pdb|3SRH|D Chain D, Human M2 Pyruvate Kinase
Length = 551
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 95 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 154
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 155 KKGATLKIT 163
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
Length = 518
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 62 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 121
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 122 KKGATLKIT 130
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
Length = 530
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 74 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 133
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 134 KKGATLKIT 142
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator
pdb|4G1N|B Chain B, Pkm2 In Complex With An Activator
pdb|4G1N|C Chain C, Pkm2 In Complex With An Activator
pdb|4G1N|D Chain D, Pkm2 In Complex With An Activator
Length = 518
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 62 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 121
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 122 KKGATLKIT 130
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|B Chain B, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|C Chain C, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|D Chain D, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|E Chain E, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|F Chain F, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|G Chain G, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|H Chain H, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase
Length = 530
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 74 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 133
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 134 KKGATLKIT 142
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|B Chain B, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|C Chain C, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|D Chain D, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|E Chain E, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|F Chain F, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|G Chain G, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|H Chain H, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
Length = 531
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 75 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 134
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 135 KKGATLKIT 143
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|B Chain B, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|C Chain C, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|D Chain D, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
Length = 533
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 77 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 136
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 137 KKGATLKIT 145
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 533
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 77 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 136
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 137 KKGATLKIT 145
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|B Chain B, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|C Chain C, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|D Chain D, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|E Chain E, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|F Chain F, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|G Chain G, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|H Chain H, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1A5U|A Chain A, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|B Chain B, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|C Chain C, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|D Chain D, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|E Chain E, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|F Chain F, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|G Chain G, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|H Chain H, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A49|A Chain A, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|B Chain B, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|C Chain C, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|D Chain D, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|E Chain E, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|F Chain F, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|G Chain G, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|H Chain H, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
Length = 530
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 74 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 133
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 134 KKGATLKIT 142
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 227 SPTTVFSSLVC--PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284
+PTT F + V + S +L+++ + I + +G++ + +L+ + T VV+
Sbjct: 178 APTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE----IDRLSDVDTTPVVV 233
Query: 285 GSAIAWGAFGYSGYVRMWDPRSGEVVWE 312
+ A Y+G + D RSG+++W+
Sbjct: 234 NGVVF--ALAYNGNLTALDLRSGQIMWK 259
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|B Chain B, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|C Chain C, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|D Chain D, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|E Chain E, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|F Chain F, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|G Chain G, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|H Chain H, Recombinant Rabbit Muscle Pyruvate Kinase
Length = 530
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 74 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 133
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 134 KKGATLKIT 142
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|B Chain B, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|C Chain C, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|D Chain D, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|E Chain E, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|F Chain F, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|G Chain G, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|H Chain H, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
Length = 530
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 74 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 133
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 134 KKGATLKIT 142
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With
Mn2+, K+, And Pyruvate
Length = 530
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 187 DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL 246
++S G H Y + ++V +A + SDP +YR A+ + + L+ V L
Sbjct: 74 NFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVEL 133
Query: 247 IDKSTLQIS 255
+TL+I+
Sbjct: 134 KKGATLKIT 142
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 227 SPTTVFSSLVC--PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284
+PTT F + V + S +L+++ + I + +G++ + +L+ + T VV+
Sbjct: 183 APTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE----IDRLSDVDTTPVVV 238
Query: 285 GSAIAWGAFGYSGYVRMWDPRSGEVVWE 312
+ A Y+G + D RSG+++W+
Sbjct: 239 NGVVF--ALAYNGNLTALDLRSGQIMWK 264
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 227 SPTTVFSSLVC--PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284
+PTT F + V + S +L+++ + I + +G++ + +L+ + T VV+
Sbjct: 175 APTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE----IDRLSDVDTTPVVV 230
Query: 285 GSAIAWGAFGYSGYVRMWDPRSGEVVWE 312
+ A Y+G + D RSG+++W+
Sbjct: 231 NGVVF--ALAYNGNLTALDLRSGQIMWK 256
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 227 SPTTVFSSLVC--PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284
+PTT F + V + S +L+++ + I + +G++ + +L+ + T VV+
Sbjct: 184 APTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE----IDRLSDVDTTPVVV 239
Query: 285 GSAIAWGAFGYSGYVRMWDPRSGEVVWE 312
+ A Y+G + D RSG+++W+
Sbjct: 240 NGVVF--ALAYNGNLTALDLRSGQIMWK 265
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 297 GYVRMWDPRSGEVVWETNEPGSGRSAR------FGDSFADVDVDVDELTLFKICS--KSG 348
G V++WDPR + EP G + R FG+++ + V C+ +G
Sbjct: 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV--------CAGYDNG 190
Query: 349 DIAMADLRNLG 359
DI + DLRN+
Sbjct: 191 DIKLFDLRNMA 201
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 227 SPTTVFSSLVC--PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284
+PTT F + V + S +L+++ + I + +G++ + +L+ + T VV+
Sbjct: 200 APTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE----IDRLSDVDTTPVVV 255
Query: 285 GSAIAWGAFGYSGYVRMWDPRSGEVVWE 312
+ A Y+G + D RSG+++W+
Sbjct: 256 NGVVF--ALAYNGNLTALDLRSGQIMWK 281
>pdb|2D0V|A Chain A, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|D Chain D, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|I Chain I, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
Length = 597
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 32/200 (16%)
Query: 154 YDWNLSHSVTVRTHLDNITSIRHVWS-----------------DVAAVGSDYSSGIHFYD 196
YD N ++S + + ++DN+ ++H WS DV V S + + D
Sbjct: 21 YDSN-NYSTSTQINVDNVKQLKHAWSFSTGELHGHEGAPLVIGDVMYVHSSFPNKTFALD 79
Query: 197 LSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLL---IDKSTLQ 253
L+ H+ H + DP A A D + K S+++ +D +
Sbjct: 80 LNDPGHILWQH-SPKQDP---AARSVACCDLVNRGLAYWPGDDKTPSLIIKTQLDGHLVA 135
Query: 254 ISSEIGRQS-GASSKNMAVGK-LTWIPATG---VVLGSAIAWGAFGYSGYVRMWDPRSGE 308
++++ G + + ++ VG+ LT P ++GS+ A G G+V ++ R+GE
Sbjct: 136 LNAKTGEEFWKVENGDIKVGQTLTQAPYVVHDLAIVGSSGA--ELGVRGHVTAYNVRTGE 193
Query: 309 VVWETNEPGSGRSARFGDSF 328
W G D F
Sbjct: 194 QAWRYYATGPDAEIGLADDF 213
>pdb|3DTZ|A Chain A, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|B Chain B, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|C Chain C, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|D Chain D, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|E Chain E, Crystal Structure Of Putative Chlorite Dismutase Ta0507
Length = 244
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 61 RDPDVFSVXXXXXXXXXXPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQ 113
R+PD+ + P S FS + DE+ Y + +L+ ++ PPL+
Sbjct: 86 RNPDLXILAKERVQASXRPIAVSSFSSISIYDESPYNAXNKKLEDSLRLPPLR 138
>pdb|2JF6|A Chain A, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF6|B Chain B, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF7|A Chain A, Structure Of Strictosidine Glucosidase
pdb|2JF7|B Chain B, Structure Of Strictosidine Glucosidase
Length = 532
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 357 NLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLE------VWSRVRE 410
N G W ++P+ IS N N H YK + + + LE WSRV
Sbjct: 66 NRGPSIWDTFTQRSPAKISDGSNGNQAINCYHMYKEDIKIMKQTGLESYRFSISWSRVLP 125
Query: 411 GRNRSC---SEGL-FRRNFVDRVEDSG 433
G + +G+ F +F+D + +G
Sbjct: 126 GGRLAAGVNKDGVKFYHDFIDELLANG 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,483,695
Number of Sequences: 62578
Number of extensions: 600092
Number of successful extensions: 1040
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 37
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)