Query 012060
Match_columns 472
No_of_seqs 316 out of 1482
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.1E-62 2.3E-67 533.3 25.6 350 14-408 35-546 (571)
2 KOG2714 SETA binding protein S 100.0 5.2E-52 1.1E-56 417.3 25.8 446 13-469 8-465 (465)
3 PHA02713 hypothetical protein; 100.0 2.3E-52 5E-57 452.9 23.3 350 13-408 23-533 (557)
4 PHA02790 Kelch-like protein; P 100.0 1.3E-45 2.8E-50 394.1 21.3 340 15-408 22-470 (480)
5 PHA03098 kelch-like protein; P 100.0 2.9E-41 6.2E-46 364.6 25.4 350 15-408 9-511 (534)
6 KOG4441 Proteins containing BT 100.0 1.6E-37 3.4E-42 337.0 19.7 204 139-378 331-561 (571)
7 PHA02713 hypothetical protein; 100.0 8.7E-33 1.9E-37 300.1 18.3 199 139-368 302-542 (557)
8 PHA02790 Kelch-like protein; P 100.0 2.2E-29 4.8E-34 269.1 17.2 185 139-367 270-478 (480)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 2E-27 4.3E-32 243.3 22.0 230 139-399 16-329 (346)
10 TIGR03548 mutarot_permut cycli 100.0 3.9E-27 8.4E-32 239.2 19.1 208 156-399 53-311 (323)
11 TIGR03547 muta_rot_YjhT mutatr 99.9 1.7E-25 3.7E-30 229.0 20.7 206 159-399 2-265 (346)
12 PHA03098 kelch-like protein; P 99.9 1.7E-25 3.8E-30 241.8 20.1 204 140-371 294-523 (534)
13 PLN02153 epithiospecifier prot 99.9 1.8E-24 3.8E-29 221.4 21.1 232 140-399 32-322 (341)
14 PLN02153 epithiospecifier prot 99.9 6.8E-24 1.5E-28 217.1 25.1 210 161-400 19-260 (341)
15 PRK14131 N-acetylneuraminic ac 99.9 2.1E-24 4.7E-29 223.9 21.0 228 140-399 38-351 (376)
16 TIGR03548 mutarot_permut cycli 99.9 1.1E-23 2.4E-28 213.9 18.8 181 140-348 72-314 (323)
17 PLN02193 nitrile-specifier pro 99.9 8.7E-23 1.9E-27 217.9 24.3 213 156-400 153-386 (470)
18 PLN02193 nitrile-specifier pro 99.9 1.3E-22 2.8E-27 216.6 22.1 229 140-399 175-451 (470)
19 PRK14131 N-acetylneuraminic ac 99.9 1E-21 2.3E-26 203.8 18.4 209 156-399 19-287 (376)
20 PF02214 BTB_2: BTB/POZ domain 99.7 2.8E-18 6E-23 143.7 6.7 87 18-106 1-94 (94)
21 KOG2716 Polymerase delta-inter 99.6 2.1E-16 4.5E-21 151.5 6.5 92 14-107 3-98 (230)
22 KOG4693 Uncharacterized conser 99.6 1.1E-13 2.5E-18 133.4 17.2 208 162-400 76-311 (392)
23 KOG1665 AFH1-interacting prote 99.5 3.9E-15 8.5E-20 139.7 4.5 95 12-107 5-104 (302)
24 KOG0379 Kelch repeat-containin 99.4 2.3E-12 5E-17 138.2 18.1 210 161-402 57-286 (482)
25 KOG2715 Uncharacterized conser 99.4 6.4E-14 1.4E-18 126.1 3.7 91 14-107 19-115 (210)
26 smart00225 BTB Broad-Complex, 99.4 5.3E-13 1.2E-17 107.6 6.0 87 17-107 1-90 (90)
27 KOG2723 Uncharacterized conser 99.4 6.7E-13 1.5E-17 126.6 6.2 101 12-113 5-109 (221)
28 KOG0379 Kelch repeat-containin 99.3 2.9E-11 6.4E-16 129.7 18.2 205 141-370 71-312 (482)
29 KOG3713 Voltage-gated K+ chann 99.3 1.8E-12 4E-17 134.7 7.4 93 13-107 28-133 (477)
30 KOG4693 Uncharacterized conser 99.3 1.6E-11 3.4E-16 118.8 11.9 174 151-348 107-313 (392)
31 KOG4390 Voltage-gated A-type K 99.3 3.4E-12 7.3E-17 128.3 5.1 93 13-107 37-132 (632)
32 KOG1230 Protein containing rep 99.3 1.3E-10 2.9E-15 118.1 16.3 213 160-399 62-315 (521)
33 PF00651 BTB: BTB/POZ domain; 99.0 3.8E-10 8.2E-15 96.0 4.6 91 14-107 9-104 (111)
34 KOG1230 Protein containing rep 98.9 5.2E-08 1.1E-12 99.5 16.3 174 151-345 100-315 (521)
35 PF13964 Kelch_6: Kelch motif 98.9 2.7E-09 5.9E-14 78.7 4.9 49 164-218 1-50 (50)
36 smart00612 Kelch Kelch domain. 98.7 4.2E-08 9E-13 70.2 5.2 47 180-229 1-47 (47)
37 PF01344 Kelch_1: Kelch motif; 98.6 1.7E-08 3.7E-13 73.1 2.1 46 164-215 1-47 (47)
38 PF13964 Kelch_6: Kelch motif 98.5 7.9E-08 1.7E-12 70.8 4.0 47 217-276 1-50 (50)
39 KOG4350 Uncharacterized conser 98.5 1.8E-08 3.9E-13 102.4 -0.1 92 14-107 43-170 (620)
40 KOG4152 Host cell transcriptio 98.5 2.7E-06 5.8E-11 89.0 15.3 184 142-349 93-344 (830)
41 PF01344 Kelch_1: Kelch motif; 98.4 2.7E-07 5.7E-12 66.8 4.2 44 217-273 1-47 (47)
42 smart00612 Kelch Kelch domain. 98.1 3.4E-06 7.4E-11 60.1 4.7 42 282-328 1-42 (47)
43 KOG1545 Voltage-gated shaker-l 98.1 1.3E-06 2.7E-11 88.1 2.7 88 13-102 58-149 (507)
44 PF07646 Kelch_2: Kelch motif; 98.1 5.3E-06 1.1E-10 60.8 4.6 46 164-215 1-49 (49)
45 COG3055 Uncharacterized protei 98.0 0.00027 5.9E-09 71.8 16.1 231 141-399 47-357 (381)
46 PF13415 Kelch_3: Galactose ox 98.0 1.3E-05 2.9E-10 58.7 4.9 48 178-226 1-48 (49)
47 KOG4152 Host cell transcriptio 97.8 0.00015 3.3E-09 76.2 11.6 213 159-399 27-279 (830)
48 KOG3840 Uncharaterized conserv 97.8 2.7E-05 5.8E-10 77.0 5.3 87 13-101 93-186 (438)
49 PF07646 Kelch_2: Kelch motif; 97.8 4E-05 8.6E-10 56.1 4.4 43 217-272 1-48 (49)
50 KOG2075 Topoisomerase TOP1-int 97.7 2.7E-05 5.8E-10 81.3 3.3 90 14-107 113-210 (521)
51 COG3055 Uncharacterized protei 97.7 0.00069 1.5E-08 68.9 13.1 193 176-399 44-293 (381)
52 PF13418 Kelch_4: Galactose ox 97.6 4.2E-05 9.2E-10 55.8 2.9 46 164-215 1-48 (49)
53 PRK11138 outer membrane biogen 97.5 0.027 5.9E-07 58.9 23.1 236 175-465 66-323 (394)
54 TIGR03300 assembly_YfgL outer 97.4 0.034 7.4E-07 57.5 21.9 191 175-407 62-258 (377)
55 KOG4591 Uncharacterized conser 97.2 0.00028 6E-09 66.3 3.3 90 15-107 66-159 (280)
56 PRK11138 outer membrane biogen 97.1 0.067 1.4E-06 55.9 20.8 140 224-407 252-393 (394)
57 PF13415 Kelch_3: Galactose ox 97.0 0.0013 2.9E-08 48.0 4.7 45 280-328 1-46 (49)
58 PF13418 Kelch_4: Galactose ox 96.9 0.0008 1.7E-08 48.9 3.1 44 217-273 1-48 (49)
59 KOG4682 Uncharacterized conser 96.9 0.00045 9.7E-09 71.0 2.3 97 13-114 67-172 (488)
60 TIGR03300 assembly_YfgL outer 96.9 0.31 6.7E-06 50.3 22.9 237 141-453 106-370 (377)
61 KOG0783 Uncharacterized conser 96.7 0.00081 1.8E-08 74.3 2.4 91 15-107 558-682 (1267)
62 TIGR03866 PQQ_ABC_repeats PQQ- 96.4 0.96 2.1E-05 43.7 21.7 230 180-465 44-281 (300)
63 PF13360 PQQ_2: PQQ-like domai 96.0 0.86 1.9E-05 43.2 18.6 130 242-407 3-139 (238)
64 PF08450 SGL: SMP-30/Gluconola 96.0 0.58 1.3E-05 45.3 17.5 210 178-450 11-243 (246)
65 PF13854 Kelch_5: Kelch motif 95.8 0.017 3.6E-07 40.9 4.4 40 161-206 1-42 (42)
66 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 2 4.3E-05 41.5 21.5 226 180-463 2-237 (300)
67 KOG0310 Conserved WD40 repeat- 95.7 0.1 2.3E-06 55.0 11.6 148 224-408 74-225 (487)
68 PLN02772 guanylate kinase 95.6 0.072 1.6E-06 55.9 10.1 81 164-251 24-109 (398)
69 PLN00181 protein SPA1-RELATED; 95.1 2.6 5.6E-05 48.4 21.6 235 179-461 545-791 (793)
70 PRK11028 6-phosphogluconolacto 95.0 4.6 0.0001 40.7 22.8 209 224-469 85-310 (330)
71 PTZ00421 coronin; Provisional 94.9 3.7 8.1E-05 44.6 20.8 126 167-316 74-209 (493)
72 KOG2437 Muskelin [Signal trans 94.8 0.019 4.2E-07 60.8 2.8 164 162-349 258-459 (723)
73 cd00200 WD40 WD40 domain, foun 94.8 3.4 7.5E-05 38.2 23.9 185 224-461 99-289 (289)
74 PF13854 Kelch_5: Kelch motif 94.4 0.077 1.7E-06 37.4 4.3 36 215-251 2-41 (42)
75 KOG2437 Muskelin [Signal trans 94.2 0.043 9.4E-07 58.3 3.7 108 279-399 271-393 (723)
76 PTZ00420 coronin; Provisional 93.7 5.8 0.00013 43.9 19.4 69 230-316 139-208 (568)
77 PLN02772 guanylate kinase 93.6 0.18 3.9E-06 53.0 7.0 65 277-347 31-96 (398)
78 PF07250 Glyoxal_oxid_N: Glyox 93.5 0.19 4.1E-06 49.5 6.6 137 246-408 50-197 (243)
79 PF13360 PQQ_2: PQQ-like domai 93.5 7 0.00015 36.9 19.5 188 227-461 35-228 (238)
80 PLN00181 protein SPA1-RELATED; 92.9 6 0.00013 45.4 18.7 149 274-463 538-690 (793)
81 PF07250 Glyoxal_oxid_N: Glyox 92.7 1.2 2.6E-05 44.0 10.9 119 176-317 75-208 (243)
82 KOG0310 Conserved WD40 repeat- 92.5 3 6.5E-05 44.3 14.0 145 159-351 151-304 (487)
83 PF10282 Lactonase: Lactonase, 91.9 17 0.00036 37.3 21.1 260 177-470 47-329 (345)
84 PTZ00421 coronin; Provisional 91.8 22 0.00048 38.7 20.5 154 274-464 131-291 (493)
85 KOG3473 RNA polymerase II tran 91.7 0.29 6.2E-06 41.1 4.4 82 14-98 15-111 (112)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.9 15 0.00034 40.2 18.3 74 279-354 244-331 (527)
87 KOG0291 WD40-repeat-containing 90.6 35 0.00076 38.7 20.4 168 144-350 321-502 (893)
88 KOG0285 Pleiotropic regulator 90.1 10 0.00023 39.2 14.6 219 179-462 163-388 (460)
89 cd00216 PQQ_DH Dehydrogenases 89.5 21 0.00046 38.6 17.7 157 140-315 61-274 (488)
90 TIGR01640 F_box_assoc_1 F-box 89.1 8.7 0.00019 36.8 13.1 95 297-408 70-174 (230)
91 PF11822 DUF3342: Domain of un 88.8 0.25 5.5E-06 50.2 2.2 79 25-107 14-97 (317)
92 smart00512 Skp1 Found in Skp1 88.8 0.28 6.1E-06 41.6 2.1 56 18-76 4-64 (104)
93 KOG1036 Mitotic spindle checkp 88.7 12 0.00025 38.0 13.6 106 224-359 60-166 (323)
94 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.1 5.6 0.00012 43.6 12.2 118 174-315 65-199 (527)
95 TIGR01640 F_box_assoc_1 F-box 86.7 30 0.00065 33.0 16.1 151 197-368 15-186 (230)
96 KOG0308 Conserved WD40 repeat- 86.6 7.1 0.00015 43.1 11.5 250 161-461 110-391 (735)
97 cd00200 WD40 WD40 domain, foun 86.3 27 0.00058 32.1 20.5 181 230-463 65-249 (289)
98 KOG2838 Uncharacterized conser 85.8 0.63 1.4E-05 46.2 2.9 66 13-80 128-198 (401)
99 KOG0299 U3 snoRNP-associated p 85.6 11 0.00023 40.2 11.8 198 224-469 208-416 (479)
100 KOG0305 Anaphase promoting com 85.5 8.7 0.00019 41.6 11.5 150 133-308 222-379 (484)
101 KOG1517 Guanine nucleotide bin 84.8 48 0.001 39.1 17.2 145 141-308 1077-1242(1387)
102 KOG1724 SCF ubiquitin ligase, 84.2 0.7 1.5E-05 42.7 2.3 83 22-107 12-120 (162)
103 PF12768 Rax2: Cortical protei 84.0 20 0.00044 36.1 12.8 106 190-316 10-130 (281)
104 KOG0316 Conserved WD40 repeat- 83.4 17 0.00038 35.7 11.4 135 146-308 76-216 (307)
105 PF06433 Me-amine-dh_H: Methyl 83.4 40 0.00087 34.9 14.8 82 230-316 49-137 (342)
106 COG1520 FOG: WD40-like repeat 83.4 59 0.0013 33.5 18.6 133 202-366 41-180 (370)
107 COG1520 FOG: WD40-like repeat 83.1 22 0.00048 36.7 13.3 133 175-343 65-203 (370)
108 PF03931 Skp1_POZ: Skp1 family 82.7 0.93 2E-05 34.8 2.1 55 18-75 3-59 (62)
109 KOG0783 Uncharacterized conser 82.2 0.23 4.9E-06 55.8 -2.0 90 15-107 712-808 (1267)
110 KOG3881 Uncharacterized conser 82.1 37 0.00079 35.6 13.8 180 171-399 108-309 (412)
111 KOG2321 WD40 repeat protein [G 80.9 8 0.00017 42.3 8.9 74 279-359 186-261 (703)
112 KOG0268 Sof1-like rRNA process 80.7 5.3 0.00011 41.3 7.2 95 243-359 168-262 (433)
113 KOG1036 Mitotic spindle checkp 80.4 44 0.00095 34.0 13.3 166 149-352 35-203 (323)
114 KOG2048 WD40 repeat protein [G 80.2 1.1E+02 0.0023 34.4 18.8 132 296-461 224-359 (691)
115 KOG0274 Cdc4 and related F-box 80.1 27 0.00059 38.5 13.1 170 151-359 313-485 (537)
116 KOG0316 Conserved WD40 repeat- 80.0 15 0.00033 36.2 9.7 93 241-356 80-173 (307)
117 cd00216 PQQ_DH Dehydrogenases 79.9 11 0.00023 40.9 9.8 118 174-315 57-193 (488)
118 KOG0285 Pleiotropic regulator 79.8 41 0.00089 35.0 13.1 219 141-410 206-441 (460)
119 PRK11028 6-phosphogluconolacto 79.8 70 0.0015 32.1 21.0 207 229-466 47-261 (330)
120 PF05096 Glu_cyclase_2: Glutam 79.2 19 0.00042 35.9 10.5 110 173-308 49-160 (264)
121 KOG2321 WD40 repeat protein [G 78.4 10 0.00022 41.5 8.7 109 177-308 144-261 (703)
122 KOG0278 Serine/threonine kinas 77.7 16 0.00035 36.3 9.1 86 242-351 205-292 (334)
123 PF12768 Rax2: Cortical protei 77.6 29 0.00062 35.0 11.4 108 241-368 15-130 (281)
124 PF05096 Glu_cyclase_2: Glutam 76.2 34 0.00073 34.2 11.2 105 279-410 54-159 (264)
125 KOG0286 G-protein beta subunit 76.1 95 0.0021 31.6 20.1 188 177-408 107-303 (343)
126 TIGR03074 PQQ_membr_DH membran 75.6 35 0.00076 39.3 12.7 37 278-314 314-353 (764)
127 PF10282 Lactonase: Lactonase, 75.1 64 0.0014 33.0 13.6 173 277-469 45-228 (345)
128 KOG0284 Polyadenylation factor 74.0 11 0.00024 39.6 7.3 116 180-314 235-357 (464)
129 smart00564 PQQ beta-propeller 73.5 5.7 0.00012 25.7 3.5 28 279-313 5-32 (33)
130 KOG0321 WD40 repeat-containing 73.3 78 0.0017 35.3 13.8 177 269-465 101-303 (720)
131 KOG0272 U4/U6 small nuclear ri 73.3 24 0.00052 37.3 9.6 141 227-406 313-458 (459)
132 KOG1188 WD40 repeat protein [G 72.0 54 0.0012 33.9 11.5 126 149-291 50-188 (376)
133 KOG0266 WD40 repeat-containing 71.4 1.5E+02 0.0032 31.7 19.7 151 280-465 257-411 (456)
134 PTZ00420 coronin; Provisional 70.9 1.8E+02 0.0039 32.4 20.8 141 238-408 50-197 (568)
135 KOG0307 Vesicle coat complex C 68.0 62 0.0014 38.1 12.3 139 146-306 84-241 (1049)
136 KOG1517 Guanine nucleotide bin 67.8 33 0.00071 40.4 9.9 127 156-307 1154-1289(1387)
137 KOG4378 Nuclear protein COP1 [ 67.7 62 0.0013 35.2 11.3 96 243-359 188-283 (673)
138 KOG0649 WD40 repeat protein [G 67.4 1.4E+02 0.003 29.8 14.0 92 296-406 177-272 (325)
139 PF01011 PQQ: PQQ enzyme repea 66.8 11 0.00023 25.7 3.9 29 281-316 1-29 (38)
140 KOG0647 mRNA export protein (c 66.0 1E+02 0.0022 31.5 11.9 75 224-316 78-156 (347)
141 COG3823 Glutamine cyclotransfe 64.4 1.5E+02 0.0032 29.0 13.5 123 173-316 50-216 (262)
142 KOG2919 Guanine nucleotide-bin 62.5 35 0.00075 35.1 8.0 110 227-359 218-330 (406)
143 KOG0772 Uncharacterized conser 62.2 47 0.001 36.2 9.2 182 141-351 329-525 (641)
144 PLN03219 uncharacterized prote 61.6 15 0.00033 31.5 4.6 69 1-73 20-105 (108)
145 KOG0274 Cdc4 and related F-box 61.6 1.6E+02 0.0035 32.5 13.8 173 239-464 308-483 (537)
146 KOG0305 Anaphase promoting com 61.1 22 0.00048 38.6 6.8 103 274-407 223-330 (484)
147 TIGR02658 TTQ_MADH_Hv methylam 60.8 2.2E+02 0.0047 29.8 19.2 90 241-344 26-123 (352)
148 KOG0271 Notchless-like WD40 re 57.5 1.2E+02 0.0026 32.1 10.9 136 241-409 136-277 (480)
149 KOG0270 WD40 repeat-containing 57.3 1.2E+02 0.0025 32.5 11.0 106 240-368 264-372 (463)
150 KOG0315 G-protein beta subunit 57.0 1.3E+02 0.0028 30.1 10.6 229 178-463 51-288 (311)
151 KOG0643 Translation initiation 55.9 2.3E+02 0.0051 28.6 12.4 85 272-371 151-236 (327)
152 KOG0299 U3 snoRNP-associated p 55.3 3E+02 0.0065 29.7 14.1 148 166-351 200-351 (479)
153 KOG0772 Uncharacterized conser 54.1 1.2E+02 0.0025 33.3 10.5 111 337-465 280-396 (641)
154 KOG0282 mRNA splicing factor [ 52.1 45 0.00096 35.9 7.1 152 272-464 218-373 (503)
155 KOG0284 Polyadenylation factor 51.1 43 0.00094 35.3 6.7 152 174-359 144-297 (464)
156 PF09910 DUF2139: Uncharacteri 50.7 3E+02 0.0064 28.3 13.3 162 221-408 39-230 (339)
157 KOG0303 Actin-binding protein 50.6 41 0.00089 35.4 6.4 62 240-316 152-214 (472)
158 KOG0266 WD40 repeat-containing 50.6 3.4E+02 0.0074 29.0 14.1 116 167-308 202-321 (456)
159 KOG0645 WD40 repeat protein [G 50.5 1.9E+02 0.0041 29.2 10.7 110 275-408 21-135 (312)
160 KOG0302 Ribosome Assembly prot 48.9 20 0.00043 37.4 3.9 113 273-408 262-378 (440)
161 PF02519 Auxin_inducible: Auxi 48.8 34 0.00075 29.0 4.7 56 14-73 37-99 (100)
162 KOG0281 Beta-TrCP (transducin 48.7 87 0.0019 32.6 8.3 130 151-308 259-391 (499)
163 KOG0321 WD40 repeat-containing 48.3 4.5E+02 0.0097 29.7 14.8 203 137-359 60-304 (720)
164 KOG0307 Vesicle coat complex C 48.3 52 0.0011 38.7 7.4 146 296-472 89-260 (1049)
165 KOG0296 Angio-associated migra 47.7 50 0.0011 34.4 6.4 89 231-347 300-389 (399)
166 KOG0281 Beta-TrCP (transducin 47.1 1.8E+02 0.0038 30.4 10.2 174 176-408 244-428 (499)
167 COG5201 SKP1 SCF ubiquitin lig 47.0 24 0.00052 31.4 3.5 87 18-107 5-115 (158)
168 KOG0646 WD40 repeat protein [G 46.2 4.1E+02 0.009 28.7 15.2 98 296-408 197-307 (476)
169 KOG0272 U4/U6 small nuclear ri 45.8 1.9E+02 0.004 30.9 10.3 173 242-461 283-458 (459)
170 KOG0293 WD40 repeat-containing 45.0 1.1E+02 0.0025 32.5 8.6 148 274-462 275-424 (519)
171 KOG0308 Conserved WD40 repeat- 43.8 82 0.0018 35.2 7.7 99 197-308 96-204 (735)
172 KOG4649 PQQ (pyrrolo-quinoline 43.7 1.5E+02 0.0032 30.0 8.7 58 282-356 24-81 (354)
173 KOG0264 Nucleosome remodeling 43.6 1.3E+02 0.0027 32.1 8.8 157 274-463 233-404 (422)
174 PF02239 Cytochrom_D1: Cytochr 43.2 55 0.0012 34.2 6.3 95 241-359 15-111 (369)
175 KOG0263 Transcription initiati 41.9 1E+02 0.0023 34.8 8.3 129 156-308 520-652 (707)
176 KOG0649 WD40 repeat protein [G 41.7 1.6E+02 0.0034 29.5 8.5 125 264-410 99-237 (325)
177 PF08450 SGL: SMP-30/Gluconola 41.7 1.4E+02 0.0031 28.5 8.6 144 173-345 44-202 (246)
178 KOG0313 Microtubule binding pr 40.8 2.9E+02 0.0062 29.2 10.6 77 214-308 297-379 (423)
179 KOG0271 Notchless-like WD40 re 40.6 2.3E+02 0.0051 30.0 10.0 99 196-316 137-246 (480)
180 KOG3881 Uncharacterized conser 40.3 3.8E+02 0.0082 28.4 11.5 140 141-308 161-323 (412)
181 KOG0278 Serine/threonine kinas 40.2 2.8E+02 0.0061 27.8 10.0 129 241-408 164-297 (334)
182 KOG0270 WD40 repeat-containing 38.5 2.5E+02 0.0053 30.1 9.9 112 179-316 256-372 (463)
183 KOG2838 Uncharacterized conser 37.4 6.3 0.00014 39.3 -1.7 80 26-107 262-381 (401)
184 PF13570 PQQ_3: PQQ-like domai 37.3 42 0.00092 22.8 3.0 34 308-352 2-35 (40)
185 KOG0643 Translation initiation 37.1 3.2E+02 0.007 27.7 10.0 97 224-347 155-253 (327)
186 KOG0264 Nucleosome remodeling 35.5 1.6E+02 0.0035 31.3 8.1 116 278-410 282-406 (422)
187 PF02191 OLF: Olfactomedin-lik 35.2 1.5E+02 0.0033 29.3 7.6 103 296-410 88-202 (250)
188 KOG0639 Transducin-like enhanc 35.1 2.3E+02 0.0049 31.1 9.1 99 296-408 530-663 (705)
189 KOG1446 Histone H3 (Lys4) meth 35.1 1.3E+02 0.0028 30.8 7.0 60 295-365 120-179 (311)
190 PF01466 Skp1: Skp1 family, di 35.1 23 0.0005 28.3 1.5 23 85-107 14-36 (78)
191 KOG0646 WD40 repeat protein [G 34.2 6.3E+02 0.014 27.3 13.7 95 154-256 106-212 (476)
192 PLN02919 haloacid dehalogenase 34.1 9.1E+02 0.02 29.1 19.2 79 224-311 688-776 (1057)
193 PF06433 Me-amine-dh_H: Methyl 34.1 5.6E+02 0.012 26.7 12.5 141 190-351 167-315 (342)
194 TIGR03032 conserved hypothetic 34.0 4.9E+02 0.011 26.9 11.0 102 194-316 124-240 (335)
195 COG3386 Gluconolactonase [Carb 33.9 3E+02 0.0064 28.1 9.7 51 390-455 222-278 (307)
196 KOG0303 Actin-binding protein 33.7 2.2E+02 0.0048 30.2 8.6 94 241-359 194-292 (472)
197 KOG0263 Transcription initiati 33.3 2.3E+02 0.005 32.2 9.2 142 179-356 505-649 (707)
198 KOG0296 Angio-associated migra 31.3 6.2E+02 0.013 26.7 11.2 59 278-351 115-173 (399)
199 KOG0279 G protein beta subunit 31.2 5.8E+02 0.013 26.0 13.9 179 239-463 124-313 (315)
200 KOG2055 WD40 repeat protein [G 31.0 2.1E+02 0.0045 30.9 8.0 137 295-461 278-415 (514)
201 PF07893 DUF1668: Protein of u 31.0 6E+02 0.013 26.1 16.7 48 177-233 75-122 (342)
202 PLN02919 haloacid dehalogenase 30.6 9.9E+02 0.022 28.8 14.7 68 279-356 813-888 (1057)
203 COG3823 Glutamine cyclotransfe 30.4 3E+02 0.0066 26.9 8.3 69 279-359 54-122 (262)
204 KOG0315 G-protein beta subunit 30.2 3.2E+02 0.007 27.4 8.7 144 280-464 51-198 (311)
205 KOG2055 WD40 repeat protein [G 29.8 7.3E+02 0.016 27.0 11.7 184 180-407 226-416 (514)
206 KOG0288 WD40 repeat protein Ti 29.6 2.1E+02 0.0046 30.4 7.7 54 296-359 321-374 (459)
207 KOG0265 U5 snRNP-specific prot 29.5 3.4E+02 0.0074 27.8 8.9 38 269-313 91-128 (338)
208 KOG4649 PQQ (pyrrolo-quinoline 29.2 6.2E+02 0.013 25.7 19.5 213 198-464 35-258 (354)
209 KOG0313 Microtubule binding pr 29.2 3.3E+02 0.007 28.8 8.9 93 241-357 280-377 (423)
210 PLN03090 auxin-responsive fami 28.6 91 0.002 26.7 4.1 61 9-73 36-103 (104)
211 KOG0301 Phospholipase A2-activ 27.1 9.8E+02 0.021 27.3 15.9 206 145-409 74-289 (745)
212 KOG0268 Sof1-like rRNA process 27.0 62 0.0013 33.8 3.3 87 296-408 88-175 (433)
213 KOG0918 Selenium-binding prote 26.8 2.2E+02 0.0048 30.3 7.3 96 326-452 312-408 (476)
214 KOG1539 WD repeat protein [Gen 26.0 3.9E+02 0.0084 31.0 9.4 136 296-463 469-606 (910)
215 KOG0291 WD40-repeat-containing 25.9 1.1E+03 0.023 27.4 13.9 135 179-347 319-456 (893)
216 PF12926 MOZART2: Mitotic-spin 25.6 34 0.00073 28.4 0.9 19 59-77 39-57 (88)
217 TIGR02658 TTQ_MADH_Hv methylam 25.4 7.9E+02 0.017 25.6 20.5 148 149-306 27-192 (352)
218 KOG2048 WD40 repeat protein [G 25.2 1E+03 0.023 27.0 15.4 96 151-270 18-118 (691)
219 KOG0640 mRNA cleavage stimulat 24.8 1.6E+02 0.0034 30.4 5.6 73 227-314 227-300 (430)
220 TIGR03074 PQQ_membr_DH membran 24.7 4.6E+02 0.01 30.4 10.2 63 297-365 641-718 (764)
221 PF03178 CPSF_A: CPSF A subuni 24.6 7.1E+02 0.015 24.8 10.7 138 242-405 2-154 (321)
222 PF02239 Cytochrom_D1: Cytochr 23.8 1.9E+02 0.0042 30.1 6.5 91 206-308 257-350 (369)
223 PF03178 CPSF_A: CPSF A subuni 23.4 4.5E+02 0.0098 26.3 9.0 71 169-251 89-160 (321)
224 PF14781 BBS2_N: Ciliary BBSom 23.0 5.6E+02 0.012 23.1 9.8 65 229-314 65-134 (136)
225 KOG4283 Transcription-coupled 22.8 3.4E+02 0.0074 27.9 7.5 98 240-359 122-222 (397)
226 KOG0322 G-protein beta subunit 22.8 99 0.0021 31.1 3.7 52 134-186 257-312 (323)
227 KOG1987 Speckle-type POZ prote 22.2 47 0.001 33.1 1.5 82 24-107 109-194 (297)
228 PF15092 UPF0728: Uncharacteri 21.9 47 0.001 27.5 1.1 29 402-445 46-74 (88)
229 COG3391 Uncharacterized conser 20.8 9.5E+02 0.021 24.9 12.5 145 177-348 84-229 (381)
230 KOG0318 WD40 repeat stress pro 20.8 7.2E+02 0.016 27.5 9.8 109 176-317 452-563 (603)
231 PF08662 eIF2A: Eukaryotic tra 20.7 4.7E+02 0.01 24.3 7.9 54 242-308 83-136 (194)
232 PLN03220 uncharacterized prote 20.5 1.9E+02 0.0042 24.8 4.5 59 9-71 31-101 (105)
233 KOG2919 Guanine nucleotide-bin 20.4 1.5E+02 0.0033 30.7 4.5 68 228-314 262-335 (406)
234 COG5184 ATS1 Alpha-tubulin sup 20.2 1.1E+03 0.025 25.6 15.7 110 333-454 245-359 (476)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-62 Score=533.31 Aligned_cols=350 Identities=17% Similarity=0.196 Sum_probs=301.4
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE-EcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.--||+|.|+++.|++||.+||++ |+||++||++. +..+.++. .+.||.+++.||+|+|||++.++. .|+|+|
T Consensus 35 ~lcDv~L~v~~~~~~aHR~VLAa~--S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~--~nVq~l 110 (571)
T KOG4441|consen 35 LLCDVTLLVGDREFPAHRVVLAAC--SPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISE--DNVQEL 110 (571)
T ss_pred CCceEEEEECCeeechHHHHHHhc--cHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEech--HhHHHH
Confidence 345999999999999999999999 88999999976 67778885 599999999999999999999987 899999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCCCc-----------------------------------------cc-eeeee---
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQGID-----------------------------------------AS-IVSTV--- 123 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~l~-----------------------------------------~~-~~~lL--- 123 (472)
+++|.+|||.+++++|+ |..||++.| .+ +..+|
T Consensus 111 l~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d 190 (571)
T KOG4441|consen 111 LEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSD 190 (571)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhcccc
Confidence 99999999999999999 777776422 00 00000
Q ss_pred --------------------------------------------------------------------------CccccC
Q 012060 124 --------------------------------------------------------------------------RPAADA 129 (472)
Q Consensus 124 --------------------------------------------------------------------------~~~~~~ 129 (472)
.|..++
T Consensus 191 ~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~ 270 (571)
T KOG4441|consen 191 DLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRP 270 (571)
T ss_pred CCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCc
Confidence 122222
Q ss_pred ccccceeecc---CCcEEEeeeCc---------eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCC-
Q 012060 130 LPSTFTASSD---DGSLWIAHGGQ---------ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS- 190 (472)
Q Consensus 130 ~~~a~r~~~~---~g~l~va~GG~---------Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~- 190 (472)
..+.++++++ .+.|+ ++||. |++|| |.. ++|+.+|.++++ ++++|+|||+|| ++
T Consensus 271 ~~~~~~t~~r~~~~~~l~-~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~----~~~~~~lYv~GG--~~~ 343 (571)
T KOG4441|consen 271 VMQSPRTRPRRSVSGKLV-AVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV----AVLNGKLYVVGG--YDS 343 (571)
T ss_pred cccCCCcccCcCCCCeEE-EECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE----EEECCEEEEEcc--ccC
Confidence 2445556554 25677 56653 89999 998 999999998854 459999999999 77
Q ss_pred CceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCccc
Q 012060 191 GIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKN 268 (472)
Q Consensus 191 g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~ 268 (472)
|...++++|+|||.+++|+.+++|+++|+.++ +++++|+||| ||.++ ..+++||+|||.+++ |+.
T Consensus 344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~------------W~~ 410 (571)
T KOG4441|consen 344 GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK------------WTP 410 (571)
T ss_pred CCcccceEEEecCCCCceeccCCccCccccce-eEEECCEEEEEeccccccccccEEEecCCCCc------------ccc
Confidence 89999999999999999999999999999996 9999999999 99998 569999999999944 999
Q ss_pred ccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEE
Q 012060 269 MAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKI 343 (472)
Q Consensus 269 v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~v 343 (472)
++||..++.. ++|+||++||.++....+++||+|||++|+ |+..+| |.++|+++++ ++++++||+|
T Consensus 411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~--M~~~R~~~g~-----a~~~~~iYvv 481 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAP--MNTRRSGFGV-----AVLNGKIYVV 481 (571)
T ss_pred cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCC--cccccccceE-----EEECCEEEEE
Confidence 9999987763 999999999998887678999999999999 999999 6999999994 9999999999
Q ss_pred cccCCCcccccccccC-----CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 344 CSKSGDIAMADLRNLG-----EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 344 Gg~~g~~~~~dl~s~e-----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
||+++... ++++| +|+|+.+++ |+.+| +.+++++++++||+++| ++||+|++.
T Consensus 482 GG~~~~~~---~~~VE~ydp~~~~W~~v~~----m~~~r-----s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 482 GGFDGTSA---LSSVERYDPETNQWTMVAP----MTSPR-----SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CCccCCCc---cceEEEEcCCCCceeEccc----Ccccc-----ccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 99998433 67777 999999998 99999 59999999999999999 789999776
No 2
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=100.00 E-value=5.2e-52 Score=417.32 Aligned_cols=446 Identities=24% Similarity=0.317 Sum_probs=356.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.+.+.|+|||||++|+|+++||+...|+++|.+|++.. ..+.+.+||||||++|..||||||||.|+++ .....+
T Consensus 8 ~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~-g~~~~~ 86 (465)
T KOG2714|consen 8 SSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDAS-GVFPER 86 (465)
T ss_pred CCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCc-cCchhh
Confidence 46789999999999999999999965599999999754 4567789999999999999999999999984 446677
Q ss_pred HHHhhhhhcCcchHHhhhc-CCCCCCCCccceeeeeCccccCccccce-eeccCCcEEEeeeCceEEeecccCCCCCccc
Q 012060 89 ELADEALYYGIDSQLKSAM-SPPPLQGIDASIVSTVRPAADALPSTFT-ASSDDGSLWIAHGGQISVYDWNLSHSVTVRT 166 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~-l~~~l~~l~~~~~~lL~~~~~~~~~a~r-~~~~~g~l~va~GG~Ve~YDW~~~~m~~~R~ 166 (472)
.|.+||.||||.++++-.. .+++|++..+.+...+.+..++.+++++ +.|+ ..+++|||+.|.+|||.+....+.++
T Consensus 87 llhdEA~fYGl~~llrrl~~~~~~F~Gf~~~~s~~~~~~~~g~g~ai~~~~p~-~~l~~AHg~~va~~dw~l~~~~tv~~ 165 (465)
T KOG2714|consen 87 LLHDEAMFYGLTPLLRRLTLCEELFDGFDLSLSRSVTGNAPGSGSAIRSAGPD-VGLIVAHGIVVAYFDWSLEYRSTVNT 165 (465)
T ss_pred hhhhhhhhcCcHHHHHHhhcCcccccccccccchhhccCCCCCCccccccCCC-ceEEEecccEEEEEEEEEEeeccccc
Confidence 7788999999999998322 3677999888877777777777778877 4454 67888999999999999988888899
Q ss_pred cccccceeeeeCCeEEEEcCcCCCCceecce-eeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC--CCCc
Q 012060 167 HLDNITSIRHVWSDVAAVGSDYSSGIHFYDL-SSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP--HKEN 242 (472)
Q Consensus 167 ~~~~v~~v~~l~~~lYavGG~~~~g~~~l~s-ve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~--~~l~ 242 (472)
++..+.++..++..+.++|..+..|.+.... +-..-..+..|+....-.....++.++++.-+.+|. |-.+. ....
T Consensus 166 ~~q~V~s~~~id~~~~~ia~~~k~g~~~~~~~~~~s~~~~l~W~~q~~~~~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~ 245 (465)
T KOG2714|consen 166 GYQLVFSSPRIDSGIEAIAANSKVGLGDAGLLVAGSSSGSLLWKIQEEGSNTVKGVFSLAVSVDPLFFIGTQLVALSSVG 245 (465)
T ss_pred ChhhhhccccccchhheeeecccccccccccccceeecceeeEeeccCCCcceEEEEeecccccchhhhhhhhhhccccc
Confidence 9998989999999999988754333333221 222223347798876554333333345555556666 43332 2366
Q ss_pred eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe--eeeEEcCCCCCC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE--VVWETNEPGSGR 320 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~--~vW~~~~~~~~~ 320 (472)
.|.+|++.|.| +...++.++.|+..++.|++|+...+++.+++-+-...+..+.+..||+|..+ .+|+.++++.+.
T Consensus 246 ~Igvw~~~t~q--~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n~~~~W~~i~~gt~~ 323 (465)
T KOG2714|consen 246 KIGVWHAVTQQ--AQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRNTSGNWIEIAYGTSS 323 (465)
T ss_pred cccccchhhhc--eeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCCccceEEEecCCccc
Confidence 78888888843 34455557999999999999998888888888887776778899999999998 779999997666
Q ss_pred CCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 321 SARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 321 ~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
..+...-.+++++.+--.....+..+.+++++.|+++...++|++...++|.|...++| +..+||+..+....+++
T Consensus 324 ~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~~idv~~~~~~~~~~~~tr~rGm~s~~pg----~~~~~s~k~l~Le~~~~ 399 (465)
T KOG2714|consen 324 GEVRVIDQHPETVGVGPCLFQTFEVHGSPLGLIDVCSDGGHVRVWNSTRFRGMISTQPG----STPEASFKKLALEEGDE 399 (465)
T ss_pred cceEeeeccccccCCCCeEEEEEEecCCCcceeehhhhCCcceEEeecccccccccCCC----CCcccccceeeehhccc
Confidence 55555555677777755666677888888888899988899999999999999999985 68899999999999999
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCCCCcce
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVV 469 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~~~~~ 469 (472)
..++|+..+. +...++--|+||++|+.++.+|+|+++++||||||++|+++++|+|||+++..|.+
T Consensus 400 ~~s~~~gNd~---~~~gd~~d~~vfi~Kl~~s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~~~gs~ 465 (465)
T KOG2714|consen 400 FSSMSSGNDS---GPVGDGDDQQVFIQKLVPSAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLECEGSS 465 (465)
T ss_pred cceeeecccc---cccCCchhhhhhhhhhccccCCcEEEEecCCeeEEEEEeccCceeEEEecCCCCcC
Confidence 9999999855 23334443699999999999999999999999999999999999999999998853
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-52 Score=452.88 Aligned_cols=350 Identities=10% Similarity=0.045 Sum_probs=275.7
Q ss_pred CCCCcEEEEEC-CeEEEEeHHHhhccCCCCccccccCCC--CC-CCCCEEE-cCChhhHHHHhhccccCcccCCCCCcch
Q 012060 13 QNGDRVKLNVG-GKLFETTLSTIQSGGPDSLLYALSNRQ--SD-EPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSK 87 (472)
Q Consensus 13 ~~~~~V~LnVG-G~~F~t~r~tLa~~~pssyf~amf~~~--~~-~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v 87 (472)
..--||+|.|+ |+.|++||.+||++ |+||++||++. +. .+++|.+ +.++++|+.||+|+|||+| ++ .|+
T Consensus 23 ~~l~DV~L~v~~~~~f~~Hr~vLaa~--S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~~--~nv 96 (557)
T PHA02713 23 DILCDVIITIGDGEEIKAHKTILAAG--SKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI--SS--MNV 96 (557)
T ss_pred CCCCCEEEEeCCCCEEeehHHHHhhc--CHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCC--CH--HHH
Confidence 34569999998 89999999999998 88999999976 33 3667754 8999999999999999984 44 799
Q ss_pred HHHHhhhhhcCcchHHhhhc--CCCCCCCCc-----------------------------------------cc-eeeee
Q 012060 88 QELADEALYYGIDSQLKSAM--SPPPLQGID-----------------------------------------AS-IVSTV 123 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~--l~~~l~~l~-----------------------------------------~~-~~~lL 123 (472)
++||.+|.+|||+.++++|+ |..+|++.| .+ +.++|
T Consensus 97 ~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL 176 (557)
T PHA02713 97 IDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDII 176 (557)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHh
Confidence 99999999999999999999 666555422 00 00011
Q ss_pred ------------------------Ccc------------------------------------ccCcc-cc---ceeecc
Q 012060 124 ------------------------RPA------------------------------------ADALP-ST---FTASSD 139 (472)
Q Consensus 124 ------------------------~~~------------------------------------~~~~~-~a---~r~~~~ 139 (472)
++. |+..+ .+ .++.|+
T Consensus 177 ~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r 256 (557)
T PHA02713 177 STNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPR 256 (557)
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCc
Confidence 000 00000 00 012233
Q ss_pred CCcEEEeeeC-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCC-CceecceeeeecCCC
Q 012060 140 DGSLWIAHGG-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS-GIHFYDLSSSRHVAS 205 (472)
Q Consensus 140 ~g~l~va~GG-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~-g~~~l~sve~ydp~t 205 (472)
...++ ++|| .+++|| |.. ++|+.+|..+++ ++++++||++|| .+ +...++++++|||.+
T Consensus 257 ~~~l~-~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~----a~l~~~IYviGG--~~~~~~~~~~v~~Yd~~~ 329 (557)
T PHA02713 257 QLCLV-CHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYAS----AIVDNEIIIAGG--YNFNNPSLNKVYKINIEN 329 (557)
T ss_pred ceEEE-EecCccccCCCCEEEEeCCCCeEEECCCCCccccceEE----EEECCEEEEEcC--CCCCCCccceEEEEECCC
Confidence 22333 4554 278999 988 999999998854 459999999999 44 345678999999999
Q ss_pred CccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----e
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----P 278 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~ 278 (472)
++|..+++|+.+|+.++ +++++|+||| ||.++ ..+++||+|||.+ |.|+.++||..++. .
T Consensus 330 n~W~~~~~m~~~R~~~~-~~~~~g~IYviGG~~~~~~~~sve~Ydp~~------------~~W~~~~~mp~~r~~~~~~~ 396 (557)
T PHA02713 330 KIHVELPPMIKNRCRFS-LAVIDDTIYAIGGQNGTNVERTIECYTMGD------------DKWKMLPDMPIALSSYGMCV 396 (557)
T ss_pred CeEeeCCCCcchhhcee-EEEECCEEEEECCcCCCCCCceEEEEECCC------------CeEEECCCCCcccccccEEE
Confidence 99999999999999995 9999999999 98876 4589999999999 44999999988765 3
Q ss_pred cCCeEEEEEEeCCCc-----------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEE
Q 012060 279 ATGVVLGSAIAWGAF-----------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLF 341 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~-----------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy 341 (472)
++|+|||+||.++.. ..+++||+|||++|+ |+..+| |..+|.++++ ++++++||
T Consensus 397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~--m~~~r~~~~~-----~~~~~~IY 467 (557)
T PHA02713 397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPN--FWTGTIRPGV-----VSHKDDIY 467 (557)
T ss_pred ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCC--CCcccccCcE-----EEECCEEE
Confidence 899999999976421 125789999999999 999999 5888999985 88899999
Q ss_pred EEcccCCCcccccccccC-----C-CCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC----CeEEEeecc
Q 012060 342 KICSKSGDIAMADLRNLG-----E-DPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG----GSLEVWSRV 408 (472)
Q Consensus 342 ~vGg~~g~~~~~dl~s~e-----~-d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g----~~~~v~~~~ 408 (472)
++||.++.... .+++| + |+|+.+++ |+.+| ...++++++|+||+.|| .++|.|+..
T Consensus 468 v~GG~~~~~~~--~~~ve~Ydp~~~~~W~~~~~----m~~~r-----~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 468 VVCDIKDEKNV--KTCIFRYNTNTYNGWELITT----TESRL-----SALHTILHDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEeCCCCCCcc--ceeEEEecCCCCCCeeEccc----cCccc-----ccceeEEECCEEEEEeeecceeehhhcCcc
Confidence 99998754322 23455 6 79999998 88888 58999999999999999 368888875
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=394.07 Aligned_cols=340 Identities=10% Similarity=0.078 Sum_probs=247.3
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE---EcCChhhHHHHhhccccCcccCCCCCcchHH
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF---IDRDPDVFSVLLSLLRSNRLPSTASRFSKQE 89 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf---iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~ 89 (472)
-.||++ +.|+.|++||.+||++ |+||++||+++ |+++ ++. ++.|+++|+.||+|+|||+|.++. .|+++
T Consensus 22 ~~~~~~-~~~~~~~~HR~VLAa~--S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~--~nV~~ 95 (480)
T PHA02790 22 FKTIIE-AIGGNIIVNSTILKKL--SPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS--HNVVN 95 (480)
T ss_pred hceEEE-EcCcEEeeehhhhhhc--CHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec--ccHHH
Confidence 446655 5567999999999999 88999999976 4433 453 389999999999999999999987 89999
Q ss_pred HHhhhhhcCcchHHhhhc--CCCCCCCCcc-----------------------------------c------eeeeeCc-
Q 012060 90 LADEALYYGIDSQLKSAM--SPPPLQGIDA-----------------------------------S------IVSTVRP- 125 (472)
Q Consensus 90 Ll~eA~~~ql~~l~~~c~--l~~~l~~l~~-----------------------------------~------~~~lL~~- 125 (472)
|+++|.+|||++++++|+ |..+|++.|. + +.++|..
T Consensus 96 ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd 175 (480)
T PHA02790 96 LLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESD 175 (480)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccc
Confidence 999999999999999999 7777775330 0 0011100
Q ss_pred ----ccc-------------------Ccccccee--ec--cC-CcE------------EEeeeCceE--Eee---cccCC
Q 012060 126 ----AAD-------------------ALPSTFTA--SS--DD-GSL------------WIAHGGQIS--VYD---WNLSH 160 (472)
Q Consensus 126 ----~~~-------------------~~~~a~r~--~~--~~-g~l------------~va~GG~Ve--~YD---W~~~~ 160 (472)
..+ .++.-++. +. .. ..+ +-..--.-+ .|. |.+ +
T Consensus 176 ~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~ 254 (480)
T PHA02790 176 ELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINNVKWILDCTKIFHCDKQPRKSYKYPFIEYPM-N 254 (480)
T ss_pred cCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHHHHHHHHHHHHhhccccccccccccccccCC-c
Confidence 000 00000000 00 00 000 000000000 000 000 0
Q ss_pred CC--CccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecC
Q 012060 161 SV--TVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVC 237 (472)
Q Consensus 161 m~--~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~ 237 (472)
+. ....+++. ++.+++.||++|| .++...++++++|||.+++|..+++|+.+|..++ +++++++||| ||.+
T Consensus 255 ~~~~~~~~~~~~---~~~~~~~lyviGG--~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v~~~~~iYviGG~~ 328 (480)
T PHA02790 255 MDQIIDIFHMCT---STHVGEVVYLIGG--WMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GVPANNKLYVVGGLP 328 (480)
T ss_pred ccceeeccCCcc---eEEECCEEEEEcC--CCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EEEECCEEEEECCcC
Confidence 00 00112321 2358999999999 6666678899999999999999999999999985 8899999999 8865
Q ss_pred CCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE
Q 012060 238 PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE 312 (472)
Q Consensus 238 ~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~ 312 (472)
+ .++||+|||.+ |.|+.++||..++. .++|+|||+||.++. ..++|+|||++++ |+
T Consensus 329 ~--~~sve~ydp~~------------n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~--W~ 389 (480)
T PHA02790 329 N--PTSVERWFHGD------------AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQ--WQ 389 (480)
T ss_pred C--CCceEEEECCC------------CeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCE--EE
Confidence 3 37899999999 44999999987764 389999999997654 3689999999999 99
Q ss_pred EcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECC
Q 012060 313 TNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKN 392 (472)
Q Consensus 313 ~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g 392 (472)
..+| |..+|.++++ ++++++||++||... . =..++|+|+.+++ |+.+| .++++++++|
T Consensus 390 ~~~~--m~~~r~~~~~-----~~~~~~IYv~GG~~e---~---ydp~~~~W~~~~~----m~~~r-----~~~~~~v~~~ 447 (480)
T PHA02790 390 FGPS--TYYPHYKSCA-----LVFGRRLFLVGRNAE---F---YCESSNTWTLIDD----PIYPR-----DNPELIIVDN 447 (480)
T ss_pred eCCC--CCCccccceE-----EEECCEEEEECCceE---E---ecCCCCcEeEcCC----CCCCc-----cccEEEEECC
Confidence 9999 5889999884 788999999998431 1 1224899999998 88888 4889999999
Q ss_pred EEEEecC-------CeEEEeecc
Q 012060 393 QVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 393 ~l~~~~g-------~~~~v~~~~ 408 (472)
+||+.|| .++|+|++.
T Consensus 448 ~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 448 KLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEEECCcCCCcccceEEEEECC
Confidence 9999998 457777764
No 5
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=364.56 Aligned_cols=350 Identities=10% Similarity=0.067 Sum_probs=257.4
Q ss_pred CCcEEEEE--CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 15 GDRVKLNV--GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 15 ~~~V~LnV--GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
--||+|.| +|+.|++||.+|+++ |+||++||++... +.+|.+ + ++++|+.||+|+|||++.++. .++++|+
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~--S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~--~~~~~ll 82 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSS--SEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITS--NNVKDIL 82 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhh--hHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcH--HHHHHHH
Confidence 45788877 999999999999998 8899999987533 566755 6 999999999999999999876 7899999
Q ss_pred hhhhhcCcchHHhhhc--CCCCCCCCc-----------------------------------------cc-eeeee----
Q 012060 92 DEALYYGIDSQLKSAM--SPPPLQGID-----------------------------------------AS-IVSTV---- 123 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~--l~~~l~~l~-----------------------------------------~~-~~~lL---- 123 (472)
.+|.+|||+.+++.|+ +...++..| .+ +..+|
T Consensus 83 ~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~ 162 (534)
T PHA03098 83 SIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDK 162 (534)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCC
Confidence 9999999999999998 444343211 00 00000
Q ss_pred -------------------Cc-------------------------------------------cccCccc-cc----ee
Q 012060 124 -------------------RP-------------------------------------------AADALPS-TF----TA 136 (472)
Q Consensus 124 -------------------~~-------------------------------------------~~~~~~~-a~----r~ 136 (472)
++ .|+.... +. ..
T Consensus 163 L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (534)
T PHA03098 163 LNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKI 242 (534)
T ss_pred cCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCC
Confidence 00 0000000 00 00
Q ss_pred ec----cCCcEEEeeeC-----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCC-ceecceeee
Q 012060 137 SS----DDGSLWIAHGG-----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSG-IHFYDLSSS 200 (472)
Q Consensus 137 ~~----~~g~l~va~GG-----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g-~~~l~sve~ 200 (472)
.+ ....+++++|+ .+.+|+ |.. +.++. +..++ ++++++.||++|| .++ ....+.+.+
T Consensus 243 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~lyv~GG--~~~~~~~~~~v~~ 315 (534)
T PHA03098 243 LPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY-VYCFG----SVVLNNVIYFIGG--MNKNNLSVNSVVS 315 (534)
T ss_pred CcCccCCCcceEeecccchhhceeeecchhhhhcccccCccc-cccce----EEEECCEEEEECC--CcCCCCeeccEEE
Confidence 01 11234433443 255677 444 33332 33343 3459999999999 443 335678999
Q ss_pred ecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-
Q 012060 201 RHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI- 277 (472)
Q Consensus 201 ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~- 277 (472)
|||.+++|..+++|+.+|..++ +++++++||+ ||.+. ..++++|+|||.+ +.|+.+++|..++.
T Consensus 316 yd~~~~~W~~~~~~~~~R~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~------------~~W~~~~~lp~~r~~ 382 (534)
T PHA03098 316 YDTKTKSWNKVPELIYPRKNPG-VTVFNNRIYVIGGIYNSISLNTVESWKPGE------------SKWREEPPLIFPRYN 382 (534)
T ss_pred EeCCCCeeeECCCCCcccccce-EEEECCEEEEEeCCCCCEecceEEEEcCCC------------CceeeCCCcCcCCcc
Confidence 9999999999999999999995 9999999999 98765 4589999999999 44999999887764
Q ss_pred ----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 278 ----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 278 ----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
..++.||+.||.......++++|+|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....
T Consensus 383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSP--LPISHYGGCA-----IYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCC--CCccccCceE-----EEECCEEEEECCccCCCCCc
Confidence 3899999999964332246799999999999 999998 5788999984 77899999999976432211
Q ss_pred cccccC-----CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC-------eEEEeecc
Q 012060 354 DLRNLG-----EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG-------SLEVWSRV 408 (472)
Q Consensus 354 dl~s~e-----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~-------~~~v~~~~ 408 (472)
.+..++ +|+|+.+++ |+.+| .+..+++++|+||+.||. .||+|+..
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~----~~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSS----LNFPR-----INASLCIFNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred ccceEEEecCCCCceeeCCC----CCccc-----ccceEEEECCEEEEEcCCcCCcccceeEEEeCC
Confidence 122233 899999997 77777 467888899999999983 57777654
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=336.98 Aligned_cols=204 Identities=20% Similarity=0.202 Sum_probs=179.9
Q ss_pred cCCcEEEeee---C-----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC
Q 012060 139 DDGSLWIAHG---G-----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 139 ~~g~l~va~G---G-----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
.++.||+++| | .+++|| |+. ++|+++|..+++ ++++|.|||+|| ++|...++++|+|||.
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v----~~l~g~iYavGG--~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV----AVLDGKLYAVGG--FDGEKSLNSVECYDPV 404 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccccee----EEECCEEEEEec--cccccccccEEEecCC
Confidence 3578995555 1 199999 999 999999999965 459999999999 8899999999999999
Q ss_pred CCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-C-CCceeEEEeCCCcccccccccccCCCcccccccceeEEe---
Q 012060 205 SAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-H-KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP--- 278 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~-~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--- 278 (472)
+|+|+.+++|.++|++++ +++++|+||| ||.++ . ++++||+|||.| |.|+.++||+.+|..
T Consensus 405 ~~~W~~va~m~~~r~~~g-v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t------------~~W~~~~~M~~~R~~~g~ 471 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHG-VAVLGGKLYIIGGGDGSSNCLNSVECYDPET------------NTWTLIAPMNTRRSGFGV 471 (571)
T ss_pred CCcccccCCCCcceeeeE-EEEECCEEEEEcCcCCCccccceEEEEcCCC------------CceeecCCcccccccceE
Confidence 999999999999999995 9999999999 88776 4 699999999999 449999999999763
Q ss_pred --cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 279 --ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 279 --~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+++.|||+||+++.+ ...+||+|||++++ |+..++ |..+|..+++ ++++++||++||+++... |.
T Consensus 472 a~~~~~iYvvGG~~~~~-~~~~VE~ydp~~~~--W~~v~~--m~~~rs~~g~-----~~~~~~ly~vGG~~~~~~---l~ 538 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGTS-ALSSVERYDPETNQ--WTMVAP--MTSPRSAVGV-----VVLGGKLYAVGGFDGNNN---LN 538 (571)
T ss_pred EEECCEEEEECCccCCC-ccceEEEEcCCCCc--eeEccc--CccccccccE-----EEECCEEEEEecccCccc---cc
Confidence 999999999999954 56789999999999 999998 5899999985 888999999999887644 77
Q ss_pred ccC-----CCCcEEeecCCCCcccCCC
Q 012060 357 NLG-----EDPWVYMEDKNPSMISSSG 378 (472)
Q Consensus 357 s~e-----~d~W~~~~~~~~~m~~~~~ 378 (472)
++| +|+|+...+ |...+.
T Consensus 539 ~ve~ydp~~d~W~~~~~----~~~~~~ 561 (571)
T KOG4441|consen 539 TVECYDPETDTWTEVTE----PESGRG 561 (571)
T ss_pred eeEEcCCCCCceeeCCC----cccccc
Confidence 777 999999998 666663
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.7e-33 Score=300.05 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=166.9
Q ss_pred cCCcEEEeeeC--------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC
Q 012060 139 DDGSLWIAHGG--------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 139 ~~g~l~va~GG--------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
.++.||+++|- .|++|| |.. ++|+.+|..++ +++++++|||+|| +++...++++|+|||.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~----~~~~~g~IYviGG--~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS----LAVIDDTIYAIGG--QNGTNVERTIECYTMG 375 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee----EEEECCEEEEECC--cCCCCCCceEEEEECC
Confidence 45788966551 189999 988 99999999985 4569999999999 7777778999999999
Q ss_pred CCccccCCCCcCcccceeEEEEeCCeEEE-EecCCC-------------------CCceeEEEeCCCcccccccccccCC
Q 012060 205 SAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPH-------------------KENSVLLIDKSTLQISSEIGRQSGA 264 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~-------------------~l~sVE~YDp~t~~~~~~~~~~~~~ 264 (472)
+++|..+++|+.+|+.++ +++++|+||+ ||.++. .+++||+|||.+ |
T Consensus 376 ~~~W~~~~~mp~~r~~~~-~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t------------d 442 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYG-MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN------------N 442 (557)
T ss_pred CCeEEECCCCCccccccc-EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC------------C
Confidence 999999999999999995 8999999999 886531 268999999999 4
Q ss_pred CcccccccceeEE-----ecCCeEEEEEEeCCCccccceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeecCC
Q 012060 265 SSKNMAVGKLTWI-----PATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVDEL 338 (472)
Q Consensus 265 ~W~~v~~m~~~~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~ 338 (472)
+|+.++||..+|. .++|+|||+||.++......+||+|||++ |+ |+..++ |..+|..+++ +++++
T Consensus 443 ~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~--m~~~r~~~~~-----~~~~~ 513 (557)
T PHA02713 443 IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITT--TESRLSALHT-----ILHDN 513 (557)
T ss_pred eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccc--cCccccccee-----EEECC
Confidence 4999999988765 38999999999765433445799999999 89 999999 5889999995 88899
Q ss_pred eEEEEcccCCCcccccccccC--CCCcEEeec
Q 012060 339 TLFKICSKSGDIAMADLRNLG--EDPWVYMED 368 (472)
Q Consensus 339 ~iy~vGg~~g~~~~~dl~s~e--~d~W~~~~~ 368 (472)
+||++||+++.. ....+. +|+|+.++|
T Consensus 514 ~iyv~Gg~~~~~---~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 514 TIMMLHCYESYM---LQDTFNVYTYEWNHICH 542 (557)
T ss_pred EEEEEeeeccee---ehhhcCcccccccchhh
Confidence 999999998731 122222 999999997
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=269.13 Aligned_cols=185 Identities=8% Similarity=0.029 Sum_probs=154.5
Q ss_pred cCCcEEEeeeC-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 139 DDGSLWIAHGG-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 139 ~~g~l~va~GG-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
.++.+|+++|. .+++|| |.. ++|+.+|..+++ ++++++||++|| .++ .+++|+|||.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~----v~~~~~iYviGG--~~~---~~sve~ydp~~ 340 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG----VPANNKLYVVGG--LPN---PTSVERWFHGD 340 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE----EEECCEEEEECC--cCC---CCceEEEECCC
Confidence 34678855441 289999 988 999999998854 459999999999 543 26799999999
Q ss_pred CccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ec
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PA 279 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~ 279 (472)
++|..+++|+.+|..++ +++++|+||| ||.++. .+++|+|||.+ |.|+.++||..++. .+
T Consensus 341 n~W~~~~~l~~~r~~~~-~~~~~g~IYviGG~~~~-~~~ve~ydp~~------------~~W~~~~~m~~~r~~~~~~~~ 406 (480)
T PHA02790 341 AAWVNMPSLLKPRCNPA-VASINNVIYVIGGHSET-DTTTEYLLPNH------------DQWQFGPSTYYPHYKSCALVF 406 (480)
T ss_pred CeEEECCCCCCCCcccE-EEEECCEEEEecCcCCC-CccEEEEeCCC------------CEEEeCCCCCCccccceEEEE
Confidence 99999999999999985 9999999999 887543 58999999999 44999999988864 38
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+|+|||+|| .+|+|||++|+ |+..+| |..+|.++++ ++++++||++||.++... ++++|
T Consensus 407 ~~~IYv~GG---------~~e~ydp~~~~--W~~~~~--m~~~r~~~~~-----~v~~~~IYviGG~~~~~~---~~~ve 465 (480)
T PHA02790 407 GRRLFLVGR---------NAEFYCESSNT--WTLIDD--PIYPRDNPEL-----IIVDNKLLLIGGFYRGSY---IDTIE 465 (480)
T ss_pred CCEEEEECC---------ceEEecCCCCc--EeEcCC--CCCCccccEE-----EEECCEEEEECCcCCCcc---cceEE
Confidence 999999986 37999999999 999999 5889999984 888999999999875322 45666
Q ss_pred -----CCCcEEee
Q 012060 360 -----EDPWVYME 367 (472)
Q Consensus 360 -----~d~W~~~~ 367 (472)
+|+|+.+-
T Consensus 466 ~Yd~~~~~W~~~~ 478 (480)
T PHA02790 466 VYNNRTYSWNIWD 478 (480)
T ss_pred EEECCCCeEEecC
Confidence 99998764
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.95 E-value=2e-27 Score=243.30 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=162.7
Q ss_pred cCCcEEEeeeC---ceEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCcCCCC------ceecceeee
Q 012060 139 DDGSLWIAHGG---QISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSDYSSG------IHFYDLSSS 200 (472)
Q Consensus 139 ~~g~l~va~GG---~Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~~g------~~~l~sve~ 200 (472)
.++.|||++|- .+.+|| |.. ++|+ .+|.+++ +++++++|||+|| +.. ...++.+|+
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~----~~~~~~~iYv~GG--~~~~~~~~~~~~~~~v~~ 89 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV----AAAIDGKLYVFGG--IGKANSEGSPQVFDDVYR 89 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce----EEEECCEEEEEeC--CCCCCCCCcceecccEEE
Confidence 34788855442 267776 988 9998 5788874 4569999999999 432 235789999
Q ss_pred ecCCCCccccCC-CCcCcccceeEEEEeCCeEEE-EecCCC-----------------------------------CCce
Q 012060 201 RHVASAHWTDPS-DPRIYRATVTAIADSPTTVFS-SLVCPH-----------------------------------KENS 243 (472)
Q Consensus 201 ydp~t~~W~~~a-~m~~~R~~~~ava~l~g~IYA-Gg~~~~-----------------------------------~l~s 243 (472)
|||.+++|+.++ +|+..|.+++++++++++||| ||.++. .+++
T Consensus 90 Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (346)
T TIGR03547 90 YDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169 (346)
T ss_pred EECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce
Confidence 999999999997 456666665423378999999 886531 1489
Q ss_pred eEEEeCCCcccccccccccCCCcccccccce-eEE-----ecCCeEEEEEEeCCCccccceEEEEc--CCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAVGKL-TWI-----PATGVVLGSAIAWGAFGYSGYVRMWD--PRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yD--p~~~~~vW~~~~ 315 (472)
||+|||.+ +.|+.+++|.. ++. .++++||++||..........+++|| |.+++ |+..+
T Consensus 170 v~~YDp~t------------~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~--W~~~~ 235 (346)
T TIGR03547 170 VLSYDPST------------NQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLE--WNKLP 235 (346)
T ss_pred EEEEECCC------------CceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCce--eeecC
Confidence 99999999 44999999874 332 37999999999754321233566665 56778 99999
Q ss_pred CCCCCCCcc--cccccceeeeecCCeEEEEcccCCCc----------c----cccccccC-----CCCcEEeecCCCCcc
Q 012060 316 PGSGRSARF--GDSFADVDVDVDELTLFKICSKSGDI----------A----MADLRNLG-----EDPWVYMEDKNPSMI 374 (472)
Q Consensus 316 ~~~~~~~R~--~~~~~d~~v~~~~~~iy~vGg~~g~~----------~----~~dl~s~e-----~d~W~~~~~~~~~m~ 374 (472)
+| ..+|. ..+.+-..+++++++||++||.+... . ...+.++| +|+|+.+++ |+
T Consensus 236 ~m--~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~----lp 309 (346)
T TIGR03547 236 PL--PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK----LP 309 (346)
T ss_pred CC--CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC----CC
Confidence 96 33331 11111112477899999999975210 0 00123444 899999998 77
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecC
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
.+| ....+++++|+||+.+|
T Consensus 310 ~~~-----~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 310 QGL-----AYGVSVSWNNGVLLIGG 329 (346)
T ss_pred CCc-----eeeEEEEcCCEEEEEec
Confidence 777 36677889999999999
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=3.9e-27 Score=239.22 Aligned_cols=208 Identities=10% Similarity=0.031 Sum_probs=161.9
Q ss_pred ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcc----ccCCCCcCcccceeEEEEeCCe
Q 012060 156 WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW----TDPSDPRIYRATVTAIADSPTT 230 (472)
Q Consensus 156 W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W----~~~a~m~~~R~~~~ava~l~g~ 230 (472)
|.. ++|+.+|..++. +++++.||++|| .++...++.+++||+.+++| ..+++|+.+|..++ +++++++
T Consensus 53 W~~~~~lp~~r~~~~~----~~~~~~lyviGG--~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~-~~~~~~~ 125 (323)
T TIGR03548 53 WVKDGQLPYEAAYGAS----VSVENGIYYIGG--SNSSERFSSVYRITLDESKEELICETIGNLPFTFENGS-ACYKDGT 125 (323)
T ss_pred EEEcccCCccccceEE----EEECCEEEEEcC--CCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCce-EEEECCE
Confidence 888 899999987643 358999999999 66667789999999999998 78999999999885 8999999
Q ss_pred EEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccce-eE-----EecCCeEEEEEEeCCCccccceEEEE
Q 012060 231 VFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL-TW-----IPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 231 IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
||+ ||... ..++.+++|||.+ ++|+.+++|.. +| ..++++|||.||.++. ...++++|
T Consensus 126 iYv~GG~~~~~~~~~v~~yd~~~------------~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~y 191 (323)
T TIGR03548 126 LYVGGGNRNGKPSNKSYLFNLET------------QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKY 191 (323)
T ss_pred EEEEeCcCCCccCceEEEEcCCC------------CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEE
Confidence 999 87643 4589999999999 44999998753 33 2489999999997654 23578999
Q ss_pred cCCCCeeeeEEcCCCCC-CCCcc--cccccceeeeecCCeEEEEcccCCCcccc---c----------------------
Q 012060 303 DPRSGEVVWETNEPGSG-RSARF--GDSFADVDVDVDELTLFKICSKSGDIAMA---D---------------------- 354 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~-~~~R~--~~~~~d~~v~~~~~~iy~vGg~~g~~~~~---d---------------------- 354 (472)
||++++ |+..++|.. ..+|. +++. +++.+++||++||.++..... +
T Consensus 192 d~~~~~--W~~~~~~~~~~~p~~~~~~~~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T TIGR03548 192 SPKKNQ--WQKVADPTTDSEPISLLGAAS----IKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPE 265 (323)
T ss_pred ecCCCe--eEECCCCCCCCCceeccceeE----EEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcc
Confidence 999999 999998631 23333 3332 456689999999987532100 0
Q ss_pred ----ccccC-----CCCcEEeecCCCCcc-cCCCCCCCcCeEEEEECCEEEEecC
Q 012060 355 ----LRNLG-----EDPWVYMEDKNPSMI-SSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 355 ----l~s~e-----~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
.++++ +|+|+.+++ |+ .+| ++..+++++++||+.+|
T Consensus 266 ~~~~~~~v~~yd~~~~~W~~~~~----~p~~~r-----~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 266 WYNWNRKILIYNVRTGKWKSIGN----SPFFAR-----CGAALLLTGNNIFSING 311 (323)
T ss_pred ccCcCceEEEEECCCCeeeEccc----cccccc-----CchheEEECCEEEEEec
Confidence 12344 899999997 54 466 57889999999999999
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.94 E-value=1.7e-25 Score=229.02 Aligned_cols=206 Identities=12% Similarity=0.055 Sum_probs=151.7
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecC--CCCccccCCCCc-CcccceeEEEEeCCeEEE-E
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHV--ASAHWTDPSDPR-IYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp--~t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-G 234 (472)
++||.+|...+ +++++++||++|| +.. +.+.+||+ .+++|..+++|+ .+|..++ ++++++.||+ |
T Consensus 2 ~~lp~~~~~~~----~~~~~~~vyv~GG--~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~-~~~~~~~iYv~G 70 (346)
T TIGR03547 2 PDLPVGFKNGT----GAIIGDKVYVGLG--SAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAV-AAAIDGKLYVFG 70 (346)
T ss_pred CCCCccccCce----EEEECCEEEEEcc--ccC----CeeEEEECCCCCCCceECCCCCCCCcccce-EEEECCEEEEEe
Confidence 56888888753 3468999999999 432 56788985 688999999998 5899985 9999999999 8
Q ss_pred ecCC-------CCCceeEEEeCCCcccccccccccCCCccccc-ccceeEE------ecCCeEEEEEEeCCCc-------
Q 012060 235 LVCP-------HKENSVLLIDKSTLQISSEIGRQSGASSKNMA-VGKLTWI------PATGVVLGSAIAWGAF------- 293 (472)
Q Consensus 235 g~~~-------~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-~m~~~~~------~~~g~Lyv~Gg~~g~~------- 293 (472)
|... ..++.+|+|||.+ |.|+.++ ++...+. .++++|||+||.++..
T Consensus 71 G~~~~~~~~~~~~~~~v~~Yd~~~------------~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 138 (346)
T TIGR03547 71 GIGKANSEGSPQVFDDVYRYDPKK------------NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFAD 138 (346)
T ss_pred CCCCCCCCCcceecccEEEEECCC------------CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhh
Confidence 8643 1378999999999 4499997 3444332 3699999999976421
Q ss_pred --------------------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 294 --------------------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 294 --------------------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
..+++||+|||.+++ |+..++| +..+|.++++ ++++++||++||.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~--W~~~~~~-p~~~r~~~~~-----~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 139 LSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQ--WRNLGEN-PFLGTAGSAI-----VHKGNKLLLINGEI 210 (346)
T ss_pred HhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCc--eeECccC-CCCcCCCceE-----EEECCEEEEEeeee
Confidence 013789999999999 9999995 2347888884 78899999999975
Q ss_pred CCccc-ccccc----cCCCCcEEeecCCCCcccCCCC--CCCcCeEEEEECCEEEEecC
Q 012060 348 GDIAM-ADLRN----LGEDPWVYMEDKNPSMISSSGN--NNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 348 g~~~~-~dl~s----~e~d~W~~~~~~~~~m~~~~~~--~~~~~~~~~~~~g~l~~~~g 399 (472)
..... .++.. .++++|+.+++ |+.+|.. ....++.+++++|+||+.+|
T Consensus 211 ~~~~~~~~~~~y~~~~~~~~W~~~~~----m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 211 KPGLRTAEVKQYLFTGGKLEWNKLPP----LPPPKSSSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred CCCccchheEEEEecCCCceeeecCC----CCCCCCCccccccEEeeeEECCEEEEeec
Confidence 32111 11111 13679999998 6554410 00124447789999999998
No 12
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=241.76 Aligned_cols=204 Identities=9% Similarity=0.115 Sum_probs=163.3
Q ss_pred CCcEEEeeeC--------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 140 DGSLWIAHGG--------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 140 ~g~l~va~GG--------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
++.+|+.+|. .+.+|| |.. ++|+.+|..+++ +++++.||++|| .++...++++++|||.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~----~~~~~~lyv~GG--~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGV----TVFNNRIYVIGG--IYNSISLNTVESWKPGE 367 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceE----EEECCEEEEEeC--CCCCEecceEEEEcCCC
Confidence 4678855441 178899 988 999999998854 459999999999 66667789999999999
Q ss_pred CccccCCCCcCcccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI----- 277 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~----- 277 (472)
++|+.+++|+.+|..++ +++++++||+ ||... ..++++|+|||.++ .|+.+++|..++.
T Consensus 368 ~~W~~~~~lp~~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~------------~W~~~~~~p~~r~~~~~~ 434 (534)
T PHA03098 368 SKWREEPPLIFPRYNPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTN------------KWSKGSPLPISHYGGCAI 434 (534)
T ss_pred CceeeCCCcCcCCccce-EEEECCEEEEECCcCCCCcccceEEEEeCCCC------------eeeecCCCCccccCceEE
Confidence 99999999999999985 8999999999 88543 34799999999993 3999999887654
Q ss_pred ecCCeEEEEEEeCCCcc--ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 PATGVVLGSAIAWGAFG--YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~--~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.+.... ..+.+++|||++++ |+..++ |..+|.++++ ++.+++||++||.++.....++
T Consensus 435 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~~~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~v 505 (534)
T PHA03098 435 YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSS--LNFPRINASL-----CIFNNKIYVVGGDKYEYYINEI 505 (534)
T ss_pred EECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCC--CCcccccceE-----EEECCEEEEEcCCcCCccccee
Confidence 38999999998654321 24579999999999 999988 4778998885 7779999999998754322223
Q ss_pred cccC--CCCcEEeecCCC
Q 012060 356 RNLG--EDPWVYMEDKNP 371 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~ 371 (472)
..+. +|+|..+.+.++
T Consensus 506 ~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 506 EVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EEEeCCCCEEEecCCCcc
Confidence 3332 999999987443
No 13
>PLN02153 epithiospecifier protein
Probab=99.93 E-value=1.8e-24 Score=221.44 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=165.8
Q ss_pred CCcEEEeeeC---------ceEEee-----ccc-CCCC-Ccccc-ccccceeeeeCCeEEEEcCcCCCCceecceeeeec
Q 012060 140 DGSLWIAHGG---------QISVYD-----WNL-SHSV-TVRTH-LDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 140 ~g~l~va~GG---------~Ve~YD-----W~~-~~m~-~~R~~-~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
++.||+++|. .+++|| |.. +++. .+|.. ++. ++++++++||++|| .++...++.+++||
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~--~~~~~~~~iyv~GG--~~~~~~~~~v~~yd 107 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV--RMVAVGTKLYIFGG--RDEKREFSDFYSYD 107 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce--EEEEECCEEEEECC--CCCCCccCcEEEEE
Confidence 4678865552 178899 987 6653 34431 111 34568999999999 66666788999999
Q ss_pred CCCCccccCCCC-----cCcccceeEEEEeCCeEEE-EecCC-C------CCceeEEEeCCCcccccccccccCCCcccc
Q 012060 203 VASAHWTDPSDP-----RIYRATVTAIADSPTTVFS-SLVCP-H------KENSVLLIDKSTLQISSEIGRQSGASSKNM 269 (472)
Q Consensus 203 p~t~~W~~~a~m-----~~~R~~~~ava~l~g~IYA-Gg~~~-~------~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v 269 (472)
|.+++|+.+++| +.+|+.++ +++.+++||+ ||.+. + .++.+++|||.+ +.|+.+
T Consensus 108 ~~t~~W~~~~~~~~~~~p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~------------~~W~~l 174 (341)
T PLN02153 108 TVKNEWTFLTKLDEEGGPEARTFHS-MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD------------GKWVQL 174 (341)
T ss_pred CCCCEEEEeccCCCCCCCCCceeeE-EEEECCEEEEECCccCCCccCCCcccceEEEEECCC------------CeEeeC
Confidence 999999999888 78899885 8899999999 88653 1 367899999999 449999
Q ss_pred cccc---eeE-----EecCCeEEEEEEeC------CCcc-ccceEEEEcCCCCeeeeEEcCCC-CCCCCcccccccceee
Q 012060 270 AVGK---LTW-----IPATGVVLGSAIAW------GAFG-YSGYVRMWDPRSGEVVWETNEPG-SGRSARFGDSFADVDV 333 (472)
Q Consensus 270 ~~m~---~~~-----~~~~g~Lyv~Gg~~------g~~~-~~~sve~yDp~~~~~vW~~~~~~-~~~~~R~~~~~~d~~v 333 (472)
++|. .+| ..++++||++||.+ |... .++.|++|||.+++ |+.++++ .+..+|.++++
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~----- 247 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTGAKPSARSVFAH----- 247 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccCCCCCCcceeee-----
Confidence 8764 222 34899999988753 2111 25689999999999 9998763 35678988884
Q ss_pred eecCCeEEEEcccCCC--------cc-ccccccc--CCCCcEEeecCC-CCcccCCCCCCCcCeEEEEEC-CEEEEecC
Q 012060 334 DVDELTLFKICSKSGD--------IA-MADLRNL--GEDPWVYMEDKN-PSMISSSGNNNGENKLIHCYK-NQVFVGRG 399 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~--------~~-~~dl~s~--e~d~W~~~~~~~-~~m~~~~~~~~~~~~~~~~~~-g~l~~~~g 399 (472)
++++++||++||.... .. ..|+-.+ ++++|+.+.... ++|+.++. ....+.+.+ ++||+.+|
T Consensus 248 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~----~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 248 AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT----AYTTATVYGKNGLLMHGG 322 (341)
T ss_pred EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc----cccccccCCcceEEEEcC
Confidence 7889999999996321 01 1122222 289999997422 24555553 233444444 48999988
No 14
>PLN02153 epithiospecifier protein
Probab=99.93 E-value=6.8e-24 Score=217.10 Aligned_cols=210 Identities=10% Similarity=0.018 Sum_probs=156.5
Q ss_pred CCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc-Cccc---ceeEEEEeCCeEEE-Ee
Q 012060 161 SVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR-IYRA---TVTAIADSPTTVFS-SL 235 (472)
Q Consensus 161 m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~-~~R~---~~~ava~l~g~IYA-Gg 235 (472)
+|.+|..|++ +++++.||++||.........+.+++||+.+++|..+++|. .+|. +++ +++++++||+ ||
T Consensus 19 ~P~pR~~h~~----~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~-~~~~~~~iyv~GG 93 (341)
T PLN02153 19 GPGPRCSHGI----AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR-MVAVGTKLYIFGG 93 (341)
T ss_pred CCCCCCcceE----EEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE-EEEECCEEEEECC
Confidence 7888998854 45899999999942122345678999999999999998774 4443 564 8899999999 88
Q ss_pred cCC-CCCceeEEEeCCCcccccccccccCCCccccccc-----ceeEE-----ecCCeEEEEEEeCCCc-----cccceE
Q 012060 236 VCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG-----KLTWI-----PATGVVLGSAIAWGAF-----GYSGYV 299 (472)
Q Consensus 236 ~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m-----~~~~~-----~~~g~Lyv~Gg~~g~~-----~~~~sv 299 (472)
.+. ..++.+++|||.+++ |+.+++| ..+|. ..+++||+.||.+... ..+++|
T Consensus 94 ~~~~~~~~~v~~yd~~t~~------------W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 94 RDEKREFSDFYSYDTVKNE------------WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCCCCccCcEEEEECCCCE------------EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 765 458899999999944 9998876 33332 3889999999975321 124689
Q ss_pred EEEcCCCCeeeeEEcCCCC-CCCCcccccccceeeeecCCeEEEEcccCCC------c--ccccccccC--CCCcEEeec
Q 012060 300 RMWDPRSGEVVWETNEPGS-GRSARFGDSFADVDVDVDELTLFKICSKSGD------I--AMADLRNLG--EDPWVYMED 368 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~-~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~------~--~~~dl~s~e--~d~W~~~~~ 368 (472)
++|||.+++ |+..++|. +..+|.++++ ++.+++||++||.+.. . ...++..++ +++|+.+++
T Consensus 162 ~~yd~~~~~--W~~l~~~~~~~~~r~~~~~-----~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 162 EAYNIADGK--WVQLPDPGENFEKRGGAGF-----AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred EEEECCCCe--EeeCCCCCCCCCCCCcceE-----EEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 999999999 99998852 2378999985 7789999999986421 0 011233333 899999975
Q ss_pred CCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 369 KNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 369 ~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
. ..|+.+| ....+++++++||+.+|-
T Consensus 235 ~-g~~P~~r-----~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 235 T-GAKPSAR-----SVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred c-CCCCCCc-----ceeeeEEECCEEEEECcc
Confidence 2 1245677 477889999999999993
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.92 E-value=2.1e-24 Score=223.94 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=160.6
Q ss_pred CCcEEEeeeC---ceEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCcCCCC------ceecceeeee
Q 012060 140 DGSLWIAHGG---QISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSDYSSG------IHFYDLSSSR 201 (472)
Q Consensus 140 ~g~l~va~GG---~Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~~g------~~~l~sve~y 201 (472)
++.||+++|. .+..|| |.. ++|+ .+|.+++ ++++++.||++|| +.. ...++.+++|
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~----~v~~~~~IYV~GG--~~~~~~~~~~~~~~~v~~Y 111 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAV----AAFIDGKLYVFGG--IGKTNSEGSPQVFDDVYKY 111 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccce----EEEECCEEEEEcC--CCCCCCCCceeEcccEEEE
Confidence 4788965553 267776 987 8887 4787774 4469999999999 443 1357889999
Q ss_pred cCCCCccccCCC-CcCcccceeEEEE-eCCeEEE-EecCCC-----------------------------------CCce
Q 012060 202 HVASAHWTDPSD-PRIYRATVTAIAD-SPTTVFS-SLVCPH-----------------------------------KENS 243 (472)
Q Consensus 202 dp~t~~W~~~a~-m~~~R~~~~ava~-l~g~IYA-Gg~~~~-----------------------------------~l~s 243 (472)
||.+++|..+++ ++..|.++. +++ .+++||+ ||.+.. .++.
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~-~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHV-AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKE 190 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceE-EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCce
Confidence 999999999986 345555554 444 8999999 886531 1478
Q ss_pred eEEEeCCCcccccccccccCCCcccccccce-eEE-----ecCCeEEEEEEeCCCcccc--ceEEEEcCCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAVGKL-TWI-----PATGVVLGSAIAWGAFGYS--GYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~~~-----~~~g~Lyv~Gg~~g~~~~~--~sve~yDp~~~~~vW~~~~ 315 (472)
||+|||.+ |.|+.+++|.. ++. ..+++||++||...+.... ..+..|||++++ |+..+
T Consensus 191 v~~YD~~t------------~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~--W~~~~ 256 (376)
T PRK14131 191 VLSYDPST------------NQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK--WQKLP 256 (376)
T ss_pred EEEEECCC------------CeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcc--eeecC
Confidence 99999999 44999998875 332 3799999999864331111 234456899999 99999
Q ss_pred CCCCCCCcccc---cccceeeeecCCeEEEEcccCCCcc--------------cccccccC-----CCCcEEeecCCCCc
Q 012060 316 PGSGRSARFGD---SFADVDVDVDELTLFKICSKSGDIA--------------MADLRNLG-----EDPWVYMEDKNPSM 373 (472)
Q Consensus 316 ~~~~~~~R~~~---~~~d~~v~~~~~~iy~vGg~~g~~~--------------~~dl~s~e-----~d~W~~~~~~~~~m 373 (472)
+| ..+|.++ +.+-+.+++++++||++||.+.... ..++.++| +|+|+.+++ |
T Consensus 257 ~~--p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~----l 330 (376)
T PRK14131 257 DL--PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE----L 330 (376)
T ss_pred CC--CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc----C
Confidence 85 4554321 1111114678999999999653210 00112334 899999987 8
Q ss_pred ccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 374 ISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
+.+| .+..+++++|.||+.||
T Consensus 331 p~~r-----~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 331 PQGL-----AYGVSVSWNNGVLLIGG 351 (376)
T ss_pred CCCc-----cceEEEEeCCEEEEEcC
Confidence 8888 36678899999999999
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.91 E-value=1.1e-23 Score=213.91 Aligned_cols=181 Identities=9% Similarity=0.027 Sum_probs=142.5
Q ss_pred CCcEEEeeeCc--------eEEee-----c----cc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeee
Q 012060 140 DGSLWIAHGGQ--------ISVYD-----W----NL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSR 201 (472)
Q Consensus 140 ~g~l~va~GG~--------Ve~YD-----W----~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~y 201 (472)
++.||++ ||. +++|| | .. ++|+.+|..++ +++++++||++|| ......++.+++|
T Consensus 72 ~~~lyvi-GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~----~~~~~~~iYv~GG--~~~~~~~~~v~~y 144 (323)
T TIGR03548 72 ENGIYYI-GGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGS----ACYKDGTLYVGGG--NRNGKPSNKSYLF 144 (323)
T ss_pred CCEEEEE-cCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCce----EEEECCEEEEEeC--cCCCccCceEEEE
Confidence 3678854 542 88888 7 55 88999988874 4469999999999 4444568999999
Q ss_pred cCCCCccccCCCCc-CcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccc---eeE
Q 012060 202 HVASAHWTDPSDPR-IYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK---LTW 276 (472)
Q Consensus 202 dp~t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~---~~~ 276 (472)
||.+++|+.+++|+ .+|..+. +++++++||+ ||.++...+.+++|||+++ +|+.+++|. .++
T Consensus 145 d~~~~~W~~~~~~p~~~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~------------~W~~~~~~~~~~~p~ 211 (323)
T TIGR03548 145 NLETQEWFELPDFPGEPRVQPV-CVKLQNELYVFGGGSNIAYTDGYKYSPKKN------------QWQKVADPTTDSEPI 211 (323)
T ss_pred cCCCCCeeECCCCCCCCCCcce-EEEECCEEEEEcCCCCccccceEEEecCCC------------eeEECCCCCCCCCce
Confidence 99999999999987 5888874 7899999999 8876644567899999993 499999873 221
Q ss_pred E--------ecCCeEEEEEEeCCCc-------------------------------cccceEEEEcCCCCeeeeEEcCCC
Q 012060 277 I--------PATGVVLGSAIAWGAF-------------------------------GYSGYVRMWDPRSGEVVWETNEPG 317 (472)
Q Consensus 277 ~--------~~~g~Lyv~Gg~~g~~-------------------------------~~~~sve~yDp~~~~~vW~~~~~~ 317 (472)
. ..+++||+.||.++.. .+.++|++|||.+++ |+..++|
T Consensus 212 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~ 289 (323)
T TIGR03548 212 SLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK--WKSIGNS 289 (323)
T ss_pred eccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe--eeEcccc
Confidence 1 1479999999976421 023689999999999 9999874
Q ss_pred CCCCCcccccccceeeeecCCeEEEEcccCC
Q 012060 318 SGRSARFGDSFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 318 ~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g 348 (472)
+..+|.++++ ++++++||++||..-
T Consensus 290 -p~~~r~~~~~-----~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 290 -PFFARCGAAL-----LLTGNNIFSINGELK 314 (323)
T ss_pred -cccccCchhe-----EEECCEEEEEecccc
Confidence 3468999985 788999999999653
No 17
>PLN02193 nitrile-specifier protein
Probab=99.91 E-value=8.7e-23 Score=217.91 Aligned_cols=213 Identities=12% Similarity=0.090 Sum_probs=161.8
Q ss_pred ccc-CC---CCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc---C-cccceeEEEEe
Q 012060 156 WNL-SH---SVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR---I-YRATVTAIADS 227 (472)
Q Consensus 156 W~~-~~---m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~---~-~R~~~~ava~l 227 (472)
|.. ++ +|.+|..|++ +++++.||++||.........+.+++||+.+++|+.++++. . .|.+++ ++++
T Consensus 153 W~~~~~~~~~P~pR~~h~~----~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~-~v~~ 227 (470)
T PLN02193 153 WIKVEQKGEGPGLRCSHGI----AQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVR-MVSI 227 (470)
T ss_pred EEEcccCCCCCCCccccEE----EEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceE-EEEE
Confidence 876 44 6788999854 45899999999942122234567999999999999876542 2 245664 8899
Q ss_pred CCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCccccccc---ceeEE-----ecCCeEEEEEEeCCCccccc
Q 012060 228 PTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG---KLTWI-----PATGVVLGSAIAWGAFGYSG 297 (472)
Q Consensus 228 ~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m---~~~~~-----~~~g~Lyv~Gg~~g~~~~~~ 297 (472)
+++||+ ||.++ ..++.+++|||.+++ |+.+++| ..+|. ..+++||+.||.++.. .++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~------------W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~ 294 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE------------WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLK 294 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE------------EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-Ccc
Confidence 999999 88776 458999999999944 9999887 34443 3789999999987653 567
Q ss_pred eEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC--CCCcEEeecCCCCcc
Q 012060 298 YVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG--EDPWVYMEDKNPSMI 374 (472)
Q Consensus 298 sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e--~d~W~~~~~~~~~m~ 374 (472)
++++|||.+++ |+..++ ..+..+|.++++ ++++++||++||.++.. ..|+..+. +++|+.++++. .++
T Consensus 295 ~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~-----~~~~gkiyviGG~~g~~-~~dv~~yD~~t~~W~~~~~~g-~~P 365 (470)
T PLN02193 295 TLDSYNIVDKK--WFHCSTPGDSFSIRGGAGL-----EVVQGKVWVVYGFNGCE-VDDVHYYDPVQDKWTQVETFG-VRP 365 (470)
T ss_pred eEEEEECCCCE--EEeCCCCCCCCCCCCCcEE-----EEECCcEEEEECCCCCc-cCceEEEECCCCEEEEeccCC-CCC
Confidence 99999999999 998875 335678999985 77799999999987642 23444333 89999998631 124
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
.+| ....+++++++||+.+|-
T Consensus 366 ~~R-----~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 366 SER-----SVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CCc-----ceeEEEEECCEEEEECCc
Confidence 667 467788999999999993
No 18
>PLN02193 nitrile-specifier protein
Probab=99.90 E-value=1.3e-22 Score=216.59 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=164.9
Q ss_pred CCcEEEeeeC---------ceEEee-----ccc-CCC---CCc-cccccccceeeeeCCeEEEEcCcCCCCceecceeee
Q 012060 140 DGSLWIAHGG---------QISVYD-----WNL-SHS---VTV-RTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSS 200 (472)
Q Consensus 140 ~g~l~va~GG---------~Ve~YD-----W~~-~~m---~~~-R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ 200 (472)
.+.||+.+|- .+++|| |.. +.+ |.. |..+ +++++++.||++|| +++...++.+++
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~----~~v~~~~~lYvfGG--~~~~~~~ndv~~ 248 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGV----RMVSIGSTLYVFGG--RDASRQYNGFYS 248 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccce----EEEEECCEEEEECC--CCCCCCCccEEE
Confidence 4678855441 178899 987 443 222 3344 34569999999999 666677899999
Q ss_pred ecCCCCccccCCCC---cCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccc---c
Q 012060 201 RHVASAHWTDPSDP---RIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAV---G 272 (472)
Q Consensus 201 ydp~t~~W~~~a~m---~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~---m 272 (472)
|||.+++|+.+++| +.+|+.++ +++.+++||+ ||.+. ..++.+++|||.+++ |+.+++ +
T Consensus 249 yD~~t~~W~~l~~~~~~P~~R~~h~-~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~------------W~~~~~~~~~ 315 (470)
T PLN02193 249 FDTTTNEWKLLTPVEEGPTPRSFHS-MAADEENVYVFGGVSATARLKTLDSYNIVDKK------------WFHCSTPGDS 315 (470)
T ss_pred EECCCCEEEEcCcCCCCCCCccceE-EEEECCEEEEECCCCCCCCcceEEEEECCCCE------------EEeCCCCCCC
Confidence 99999999999998 78999985 8889999999 88766 458999999999944 998865 2
Q ss_pred ceeE-----EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC-CCCCCcccccccceeeeecCCeEEEEccc
Q 012060 273 KLTW-----IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG-SGRSARFGDSFADVDVDVDELTLFKICSK 346 (472)
Q Consensus 273 ~~~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~-~~~~~R~~~~~~d~~v~~~~~~iy~vGg~ 346 (472)
...| ..++++||+.||.++. ..+.+++|||.+++ |+..+++ .+..+|.++++ ++++++||++||.
T Consensus 316 ~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~-----~~~~~~iyv~GG~ 386 (470)
T PLN02193 316 FSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDK--WTQVETFGVRPSERSVFAS-----AAVGKHIVIFGGE 386 (470)
T ss_pred CCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCE--EEEeccCCCCCCCcceeEE-----EEECCEEEEECCc
Confidence 2222 2378999999998765 36799999999999 9999874 34678999984 7889999999997
Q ss_pred CCCc---------ccccccccC--CCCcEEeecCCC--CcccCCCCCCCcCe-EEEEEC-CEEEEecC
Q 012060 347 SGDI---------AMADLRNLG--EDPWVYMEDKNP--SMISSSGNNNGENK-LIHCYK-NQVFVGRG 399 (472)
Q Consensus 347 ~g~~---------~~~dl~s~e--~d~W~~~~~~~~--~m~~~~~~~~~~~~-~~~~~~-g~l~~~~g 399 (472)
+... ...|+-.+. +++|+.+..+.. ..+.+|.. +.. ...+.+ +.||+.||
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~---~~~~~~~~~~~~~~~~fGG 451 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGW---TASTTGTIDGKKGLVMHGG 451 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCcc---ccceeeEEcCCceEEEEcC
Confidence 5310 111333333 899999986431 12255531 111 222333 34888888
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.88 E-value=1e-21 Score=203.84 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=150.4
Q ss_pred ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC--CCccccCCCCc-CcccceeEEEEeCCeE
Q 012060 156 WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTDPSDPR-IYRATVTAIADSPTTV 231 (472)
Q Consensus 156 W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~~a~m~-~~R~~~~ava~l~g~I 231 (472)
+.. ++||.+|.... ++++++.||+.|| ..+ +.+..||+. +++|..+++|+ .+|..++ ++++++.|
T Consensus 19 ~~~l~~lP~~~~~~~----~~~~~~~iyv~gG--~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~-~v~~~~~I 87 (376)
T PRK14131 19 AEQLPDLPVPFKNGT----GAIDNNTVYVGLG--SAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAV-AAFIDGKL 87 (376)
T ss_pred cccCCCCCcCccCCe----EEEECCEEEEEeC--CCC----CeEEEEECCCCCCCeEECCcCCCCCcccce-EEEECCEE
Confidence 445 88998888763 3458999999999 433 346788875 57899999997 5898885 89999999
Q ss_pred EE-EecCC-------CCCceeEEEeCCCcccccccccccCCCccccccc-ceeE-----Ee-cCCeEEEEEEeCCCc---
Q 012060 232 FS-SLVCP-------HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG-KLTW-----IP-ATGVVLGSAIAWGAF--- 293 (472)
Q Consensus 232 YA-Gg~~~-------~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m-~~~~-----~~-~~g~Lyv~Gg~~g~~--- 293 (472)
|+ ||... ..++.+++|||.+++ |+.++++ ...+ .. .+++|||.||.+...
T Consensus 88 YV~GG~~~~~~~~~~~~~~~v~~YD~~~n~------------W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~ 155 (376)
T PRK14131 88 YVFGGIGKTNSEGSPQVFDDVYKYDPKTNS------------WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDG 155 (376)
T ss_pred EEEcCCCCCCCCCceeEcccEEEEeCCCCE------------EEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHH
Confidence 99 88653 136899999999944 9999853 3332 12 699999999965310
Q ss_pred ------------------------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEE
Q 012060 294 ------------------------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKI 343 (472)
Q Consensus 294 ------------------------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~v 343 (472)
..++.|++|||.+++ |+..++| ...+|.++++ ++.+++||++
T Consensus 156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~--W~~~~~~-p~~~~~~~a~-----v~~~~~iYv~ 227 (376)
T PRK14131 156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQ--WKNAGES-PFLGTAGSAV-----VIKGNKLWLI 227 (376)
T ss_pred HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCe--eeECCcC-CCCCCCcceE-----EEECCEEEEE
Confidence 014689999999999 9999985 2347888885 7779999999
Q ss_pred cccCCCc-cccccc----ccCCCCcEEeecCCCCcccCCCCCC---CcCeEEEEECCEEEEecC
Q 012060 344 CSKSGDI-AMADLR----NLGEDPWVYMEDKNPSMISSSGNNN---GENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 344 Gg~~g~~-~~~dl~----s~e~d~W~~~~~~~~~m~~~~~~~~---~~~~~~~~~~g~l~~~~g 399 (472)
||..... ...++. ..++++|..+++ |+.+|.+.- ......++++|+||+.||
T Consensus 228 GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 228 NGEIKPGLRTDAVKQGKFTGNNLKWQKLPD----LPPAPGGSSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred eeeECCCcCChhheEEEecCCCcceeecCC----CCCCCcCCcCCccceEeceeECCEEEEeec
Confidence 9964321 111111 123789999998 655552110 012335789999999998
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.74 E-value=2.8e-18 Score=143.74 Aligned_cols=87 Identities=43% Similarity=0.754 Sum_probs=73.6
Q ss_pred EEEEECCeEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEEcCChhhHHHHhhcccc-CcccCCCCCcchHHHH
Q 012060 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFIDRDPDVFSVLLSLLRS-NRLPSTASRFSKQELA 91 (472)
Q Consensus 18 V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfiDrdp~~F~~IL~flrt-g~l~~~~~~~~v~~Ll 91 (472)
|+|||||++|.|.++||.+ .|+++|.+|+... .+.++++||||||.+|++||+|+|+ ++++.+ .......|+
T Consensus 1 V~lNVGG~~f~~~~~tL~~-~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~-~~~~~~~l~ 78 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTR-YPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIP-DEICLEELL 78 (94)
T ss_dssp EEEEETTEEEEEEHHHHHT-STTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB----TTS-HHHHH
T ss_pred CEEEECCEEEEEcHHHHhh-CCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCC-CchhHHHHH
Confidence 7899999999999999999 7999999999852 4678899999999999999999999 777754 457899999
Q ss_pred hhhhhcCcchH-Hhhh
Q 012060 92 DEALYYGIDSQ-LKSA 106 (472)
Q Consensus 92 ~eA~~~ql~~l-~~~c 106 (472)
+||+||+|.++ ++.|
T Consensus 79 ~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 79 EEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHT-HHHHBHHC
T ss_pred HHHHHcCCCccccCCC
Confidence 99999999999 7777
No 21
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.1e-16 Score=151.55 Aligned_cols=92 Identities=33% Similarity=0.515 Sum_probs=83.8
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQE 89 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~ 89 (472)
.++.|+|||||+.|.|+++||++. +.+|++|+..+ .+..+.|||||+|.+|+.||||+|.|.+.++....++++
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk~--dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~E 80 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTKF--DGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKE 80 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhhh--hhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHH
Confidence 467899999999999999999996 89999999865 356678999999999999999999999998776678889
Q ss_pred HHhhhhhcCcchHHhhhc
Q 012060 90 LADEALYYGIDSQLKSAM 107 (472)
Q Consensus 90 Ll~eA~~~ql~~l~~~c~ 107 (472)
|++||.||.|+.|++.|.
T Consensus 81 l~~EA~fYlL~~Lv~~C~ 98 (230)
T KOG2716|consen 81 LLREAEFYLLDGLVELCQ 98 (230)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 999999999999999998
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=133.41 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=153.0
Q ss_pred CCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcccceeEEEEeCCeEEE-EecC
Q 012060 162 VTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYRATVTAIADSPTTVFS-SLVC 237 (472)
Q Consensus 162 ~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-Gg~~ 237 (472)
|..|++|.+ +..++++|+-||+ .+....+|...+|||.+++|.... -.+-.|.+++ +|++++.+|+ ||+.
T Consensus 76 PyqRYGHtv----V~y~d~~yvWGGR-ND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs-AcV~gn~MyiFGGye 149 (392)
T KOG4693|consen 76 PYQRYGHTV----VEYQDKAYVWGGR-NDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHS-ACVWGNQMYIFGGYE 149 (392)
T ss_pred chhhcCceE----EEEcceEEEEcCc-cCcccccceeeeeccccccccccceeeecCCccCCce-eeEECcEEEEecChH
Confidence 345777744 4599999999995 234568899999999999998753 3667799997 9999999999 8765
Q ss_pred C--CC-CceeEEEeCCCcccccccccccCCCcccccccce--eE------EecCCeEEEEEEeCCCcc--------ccce
Q 012060 238 P--HK-ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL--TW------IPATGVVLGSAIAWGAFG--------YSGY 298 (472)
Q Consensus 238 ~--~~-l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~--~~------~~~~g~Lyv~Gg~~g~~~--------~~~s 298 (472)
. .+ .+.+-++|..|.+ |..+-.-.. .| ..+++.+|+.||.+..++ +...
T Consensus 150 ~~a~~FS~d~h~ld~~Tmt------------Wr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~ 217 (392)
T KOG4693|consen 150 EDAQRFSQDTHVLDFATMT------------WREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDT 217 (392)
T ss_pred HHHHhhhccceeEecccee------------eeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcce
Confidence 4 33 6778888888844 887644111 12 137899999998644333 4568
Q ss_pred EEEEcCCCCeeeeEEcCCCCC-CCCcccccccceeeeecCCeEEEEcccCCCcc--cccccccC--CCCcEEeecCCCCc
Q 012060 299 VRMWDPRSGEVVWETNEPGSG-RSARFGDSFADVDVDVDELTLFKICSKSGDIA--MADLRNLG--EDPWVYMEDKNPSM 373 (472)
Q Consensus 299 ve~yDp~~~~~vW~~~~~~~~-~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~--~~dl~s~e--~d~W~~~~~~~~~m 373 (472)
|..+|.+|+. |.-..+..| ..-|.-|++ =+.|+.||+.||+.|.+. +.||=+.. +-.|..|+++-+.-
T Consensus 218 i~~ld~~T~a--W~r~p~~~~~P~GRRSHS~-----fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P 290 (392)
T KOG4693|consen 218 IMALDLATGA--WTRTPENTMKPGGRRSHST-----FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYP 290 (392)
T ss_pred eEEEeccccc--cccCCCCCcCCCcccccce-----EEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCC
Confidence 9999999999 998876433 344555764 788999999999997654 33666665 77799999865532
Q ss_pred ccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 374 ISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
.+| ..-..++.++++|..+|-
T Consensus 291 -~aR-----RRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 291 -SAR-----RRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred -Ccc-----cceeEEEECCEEEEecCC
Confidence 333 245667899999999993
No 23
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.54 E-value=3.9e-15 Score=139.74 Aligned_cols=95 Identities=33% Similarity=0.496 Sum_probs=87.1
Q ss_pred CCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 12 RQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 12 ~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
+..+..|+||+||++|.|++.||.-..|+|+|.+||... +++++.|||||+|..|+.||+|+|.|.++.. ++.+
T Consensus 5 ~~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~-s~i~ 83 (302)
T KOG1665|consen 5 SNLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSL-SDID 83 (302)
T ss_pred cChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeec-CCcc
Confidence 456789999999999999999999999999999999853 5788899999999999999999999999975 5688
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+..+|+||+||||-++++...
T Consensus 84 ~lgvLeeArff~i~sL~~hle 104 (302)
T KOG1665|consen 84 CLGVLEEARFFQILSLKDHLE 104 (302)
T ss_pred HHHHHHHhhHHhhHhHHhHHh
Confidence 999999999999999998886
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.45 E-value=2.3e-12 Score=138.20 Aligned_cols=210 Identities=14% Similarity=0.145 Sum_probs=161.2
Q ss_pred CCCccccccccceeeeeCCeEEEEcCcCCCCceecce--eeeecCCCCccccCC---CCcCcccceeEEEEeCCeEEE-E
Q 012060 161 SVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDL--SSSRHVASAHWTDPS---DPRIYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 161 m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~s--ve~ydp~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-G 234 (472)
.+.+|..|.++ .+++++|+.|| ......+.. +..+|..+..|...+ .-+.+|.++. +++++++||. |
T Consensus 57 ~p~~R~~hs~~----~~~~~~~vfGG--~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-~~~~~~~l~lfG 129 (482)
T KOG0379|consen 57 GPIPRAGHSAV----LIGNKLYVFGG--YGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHS-LSAVGDKLYLFG 129 (482)
T ss_pred Ccchhhcccee----EECCEEEEECC--CCCCCccccceeEEeecCCcccccccccCCCCCccccee-EEEECCeEEEEc
Confidence 56678888543 47999999999 444344444 888999999998854 3446899985 9999999999 9
Q ss_pred ecCC--CCCceeEEEeCCCcccccccccccCCCcccccccce---eE-----EecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 235 LVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL---TW-----IPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 235 g~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~---~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
|.+. ..++.+-.||+.| +.|+...+... .| ...+.+||+.||.+.....++++..||+
T Consensus 130 G~~~~~~~~~~l~~~d~~t------------~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~ 197 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLST------------RTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDL 197 (482)
T ss_pred cccCCCCChhheEeccCCC------------CcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecc
Confidence 8884 3489999999999 33888776333 12 2378999999998776546889999999
Q ss_pred CCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccC-CCcccccccccC--CCCcEEeecCCCCcccCCCCC
Q 012060 305 RSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKS-GDIAMADLRNLG--EDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 305 ~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~-g~~~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~ 380 (472)
++.+ |+...- +....+|.+|++ ++.++++|++||.+ ++....|+-.+. +-+|..+.. ..-++.+|
T Consensus 198 ~~~~--W~~~~~~g~~P~pR~gH~~-----~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~-~g~~p~~R--- 266 (482)
T KOG0379|consen 198 ETST--WSELDTQGEAPSPRYGHAM-----VVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPT-GGDLPSPR--- 266 (482)
T ss_pred cccc--ceecccCCCCCCCCCCceE-----EEECCeEEEEeccccCCceecceEeeecccceeeeccc-cCCCCCCc---
Confidence 9999 998866 444689999996 78899999999987 665655666666 667774443 23356788
Q ss_pred CCcCeEEEEECCEEEEecCCeE
Q 012060 381 NGENKLIHCYKNQVFVGRGGSL 402 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~~g~~~ 402 (472)
.+....+.+.++|+.+|+..
T Consensus 267 --~~h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 267 --SGHSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred --ceeeeEEECCEEEEEcCCcc
Confidence 47777899999999999766
No 25
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.43 E-value=6.4e-14 Score=126.08 Aligned_cols=91 Identities=36% Similarity=0.550 Sum_probs=80.5
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC------CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcch
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSK 87 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v 87 (472)
.+..|+|||||+.|.|+|+||.+ .|.+++..+.... .++.+.|||||||..|..||||+|.|+|-+.+ ...
T Consensus 19 ~s~wVRlNVGGt~f~TtktTl~r-dp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~e 95 (210)
T KOG2715|consen 19 VSLWVRLNVGGTVFLTTKTTLPR-DPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSE 95 (210)
T ss_pred ceEEEEEecCCEEEEeeeecccc-CcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhh
Confidence 45789999999999999999999 7888999987653 46788999999999999999999999999865 677
Q ss_pred HHHHhhhhhcCcchHHhhhc
Q 012060 88 QELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+-.|+||+||.+.++++...
T Consensus 96 eGvL~EAefyn~~~li~lik 115 (210)
T KOG2715|consen 96 EGVLEEAEFYNDPSLIQLIK 115 (210)
T ss_pred hccchhhhccCChHHHHHHH
Confidence 78999999999999877654
No 26
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.39 E-value=5.3e-13 Score=107.64 Aligned_cols=87 Identities=25% Similarity=0.334 Sum_probs=76.5
Q ss_pred cEEEEECCeEEEEeHHHhhccCCCCccccccCCCC--CCCCCEE-EcCChhhHHHHhhccccCcccCCCCCcchHHHHhh
Q 012060 17 RVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS--DEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRFSKQELADE 93 (472)
Q Consensus 17 ~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~--~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~e 93 (472)
||+|+|||+.|.+||.+|++. |+||++||+... .....+. .|.++..|+.+|+|+|++++.++. .++..++.+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~--s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAAC--SPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLEL 76 (90)
T ss_pred CeEEEECCEEEehHHHHHhhc--CHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHH
Confidence 588999999999999999997 889999998642 2455664 489999999999999999999865 689999999
Q ss_pred hhhcCcchHHhhhc
Q 012060 94 ALYYGIDSQLKSAM 107 (472)
Q Consensus 94 A~~~ql~~l~~~c~ 107 (472)
|.+|+++++.+.|+
T Consensus 77 a~~~~~~~l~~~c~ 90 (90)
T smart00225 77 ADYLQIPGLVELCE 90 (90)
T ss_pred HHHHCcHHHHhhhC
Confidence 99999999999884
No 27
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.36 E-value=6.7e-13 Score=126.61 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=86.8
Q ss_pred CCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcch
Q 012060 12 RQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSK 87 (472)
Q Consensus 12 ~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v 87 (472)
+..++.|.|||||+.|.|.+.||.+ +|++++.+||+.. .+..+.+|||||..+|++||+|+||..+.++....++
T Consensus 5 ~~~~~~v~lnvGG~~ytt~l~tL~~-~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~ 83 (221)
T KOG2723|consen 5 SEYPDVVELNVGGAIYTTRLGTLTK-FPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEV 83 (221)
T ss_pred cccCCceeeccCCeEEEeeccceee-chHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhH
Confidence 3577899999999999999999999 9999999999854 4677899999999999999999999777777666789
Q ss_pred HHHHhhhhhcCcchHHhhhcCCCCCC
Q 012060 88 QELADEALYYGIDSQLKSAMSPPPLQ 113 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~l~~~l~ 113 (472)
..|.+||+||||......+....+.+
T Consensus 84 ~~L~rEA~f~~l~~~~~~l~~~~~~~ 109 (221)
T KOG2723|consen 84 ERLVREAEFFQLEAPVTYLLNSGQID 109 (221)
T ss_pred HHHHHHHHHHccccHHHHHhcccccc
Confidence 99999999999997776665233333
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.35 E-value=2.9e-11 Score=129.75 Aligned_cols=205 Identities=19% Similarity=0.164 Sum_probs=150.8
Q ss_pred CcEEEeeeC-------c--eEEee-----ccc----CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeec
Q 012060 141 GSLWIAHGG-------Q--ISVYD-----WNL----SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 141 g~l~va~GG-------~--Ve~YD-----W~~----~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
..+||.+|. . +..|| |.. ...+.+|..+ .++.++.+||++||.. .....++.+..||
T Consensus 71 ~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~----~~~~~~~~l~lfGG~~-~~~~~~~~l~~~d 145 (482)
T KOG0379|consen 71 NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGH----SLSAVGDKLYLFGGTD-KKYRNLNELHSLD 145 (482)
T ss_pred CEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccce----eEEEECCeEEEEcccc-CCCCChhheEecc
Confidence 567755442 1 67777 765 2445677777 4556899999999952 2355688999999
Q ss_pred CCCCccccCC---CCcCcccceeEEEEeCCeEEE-EecCC-C-CCceeEEEeCCCcccccccccccCCCcccccccc---
Q 012060 203 VASAHWTDPS---DPRIYRATVTAIADSPTTVFS-SLVCP-H-KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK--- 273 (472)
Q Consensus 203 p~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-Gg~~~-~-~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~--- 273 (472)
+.+.+|..+. .++.+|++++ +++.+.+||+ ||.+. + .+|.+-+||+.+.+ |+.+....
T Consensus 146 ~~t~~W~~l~~~~~~P~~r~~Hs-~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~------------W~~~~~~g~~P 212 (482)
T KOG0379|consen 146 LSTRTWSLLSPTGDPPPPRAGHS-ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST------------WSELDTQGEAP 212 (482)
T ss_pred CCCCcEEEecCcCCCCCCcccce-EEEECCEEEEECCccCcccceeeeeeecccccc------------ceecccCCCCC
Confidence 9999999865 4677899996 9999999999 88776 3 69999999999944 88775421
Q ss_pred eeE-----EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 274 LTW-----IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 274 ~~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
.+| ...++++|++||.+....+++++-++|.++-+ |....+ +....+|.+|.. ++.+..+|++||..
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~--W~~~~~~g~~p~~R~~h~~-----~~~~~~~~l~gG~~ 285 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWE--WKLLPTGGDLPSPRSGHSL-----TVSGDHLLLFGGGT 285 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccce--eeeccccCCCCCCcceeee-----EEECCEEEEEcCCc
Confidence 122 23888999988766333478999999999966 885554 344799999996 58899999999966
Q ss_pred CC-c-ccccccccC--CCCcEEeecCC
Q 012060 348 GD-I-AMADLRNLG--EDPWVYMEDKN 370 (472)
Q Consensus 348 g~-~-~~~dl~s~e--~d~W~~~~~~~ 370 (472)
.. . ...|+-.+. ++.|..+....
T Consensus 286 ~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 286 DPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccccccccccccceeeeeccc
Confidence 53 1 233343333 89999988744
No 29
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.8e-12 Score=134.70 Aligned_cols=93 Identities=31% Similarity=0.483 Sum_probs=82.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccC--CC----------CCCCCCEEEcCChhhHHHHhhccccCcccC
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSN--RQ----------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPS 80 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~--~~----------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~ 80 (472)
..++.|+|||||.++.+.+.+|.+ +|.+.|.++.+ ++ +..++|||+||+|.+|..||+|+|||+||.
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~ 106 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHV 106 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeecc
Confidence 345689999999999999999999 89999998865 21 457899999999999999999999999998
Q ss_pred CCCCcchHHHHhhhhhcCcch-HHhhhc
Q 012060 81 TASRFSKQELADEALYYGIDS-QLKSAM 107 (472)
Q Consensus 81 ~~~~~~v~~Ll~eA~~~ql~~-l~~~c~ 107 (472)
+ .+.|...+.+|..||+|++ .++.||
T Consensus 107 p-~~vC~~~F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 107 P-ADVCPLSFEEELDYWGIDEAHLESCC 133 (477)
T ss_pred c-cccchHHHHHHHHHhCCChhhhhHHh
Confidence 6 5689999999999999998 567888
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=118.76 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=132.3
Q ss_pred eEEee-----ccc----CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcc
Q 012060 151 ISVYD-----WNL----SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYR 218 (472)
Q Consensus 151 Ve~YD-----W~~----~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R 218 (472)
+.+|| |.. ...|-.|-+| ++|++++.+|+.||.+.+-....+.+..+|-.|.+|..+. .++.-|
T Consensus 107 Ly~fDp~t~~W~~p~v~G~vPgaRDGH----sAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPEVEGFVPGARDGH----SACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred eeeeccccccccccceeeecCCccCCc----eeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 77898 865 3567788888 4567999999999943222334455778899999998864 566678
Q ss_pred cceeEEEEeCCeEEE-EecCC--C--------CCceeEEEeCCCcccccccccccCCCcccccccce-e-------EEec
Q 012060 219 ATVTAIADSPTTVFS-SLVCP--H--------KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL-T-------WIPA 279 (472)
Q Consensus 219 ~~~~ava~l~g~IYA-Gg~~~--~--------~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~-------~~~~ 279 (472)
..+. +.++++++|+ ||... + .-+.+..+|..| ..|+..++... + -...
T Consensus 183 DFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T------------~aW~r~p~~~~~P~GRRSHS~fvY 249 (392)
T KOG4693|consen 183 DFHT-ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT------------GAWTRTPENTMKPGGRRSHSTFVY 249 (392)
T ss_pred hhhh-hhhccceEEEeccccccCCCccchhhhhcceeEEEeccc------------cccccCCCCCcCCCcccccceEEE
Confidence 7774 8899999999 87543 1 146788889988 33988765211 1 1248
Q ss_pred CCeEEEEEEeCCCcc-ccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccCC
Q 012060 280 TGVVLGSAIAWGAFG-YSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~-~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g 348 (472)
+++||+.||++|... +.+.+.||||+|.- |..+.+ +...++|..+| .++.++++|..||.+-
T Consensus 250 ng~~Y~FGGYng~ln~HfndLy~FdP~t~~--W~~I~~~Gk~P~aRRRqC-----~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 250 NGKMYMFGGYNGTLNVHFNDLYCFDPKTSM--WSVISVRGKYPSARRRQC-----SVVSGGKVYLFGGTSP 313 (392)
T ss_pred cceEEEecccchhhhhhhcceeecccccch--heeeeccCCCCCccccee-----EEEECCEEEEecCCCC
Confidence 999999999988743 46799999999999 999988 55578888888 4888999999999763
No 31
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3.4e-12 Score=128.29 Aligned_cols=93 Identities=27% Similarity=0.479 Sum_probs=80.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
+.++.+.|||.|++|+|.|.||.+ +|+++|..-=... ..+.++||+||||++|++||+|+|||+|+.+ ..++++..
T Consensus 37 r~De~lvlNvSGrRFeTWknTLer-yPdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyP-R~ECi~Ay 114 (632)
T KOG4390|consen 37 RQDELLVLNVSGRRFETWKNTLER-YPDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYP-RHECISAY 114 (632)
T ss_pred ccCcEEEEeccccchhHHHhHHHh-CchhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcccCc-hHHHHHHh
Confidence 567788999999999999999999 9999887642211 4578899999999999999999999999975 77899999
Q ss_pred HhhhhhcCcch-HHhhhc
Q 012060 91 ADEALYYGIDS-QLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~-l~~~c~ 107 (472)
-+|..||||.+ ++--||
T Consensus 115 DeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 115 DEELAFYGLVPELIGDCC 132 (632)
T ss_pred hhhhhHhcccHHHHhhhh
Confidence 99999999876 667788
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.26 E-value=1.3e-10 Score=118.05 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=148.6
Q ss_pred CCCCccccccccceeeeeCCeEEEEcCcCCCCc--eecceeeeecCCCCccccCC--CCcCcccceeEEEEeCCeEEE-E
Q 012060 160 HSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGI--HFYDLSSSRHVASAHWTDPS--DPRIYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 160 ~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~--~~l~sve~ydp~t~~W~~~a--~m~~~R~~~~ava~l~g~IYA-G 234 (472)
+.|++|+++... +-=..+.|++.||+.++|. +.+|....|+..+++|..+. +.+.+|+++.||++-.|.||. |
T Consensus 62 ~~PspRsn~sl~--~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLF--ANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCccee--eccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 566777776331 1124568999999867775 56889999999999999964 466889999866666689999 8
Q ss_pred ecCC-------CCCceeEEEeCCCcccccccccccCCCcccccccc--ee----EE-ecCCeEEEEEEeCCCcc---ccc
Q 012060 235 LVCP-------HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK--LT----WI-PATGVVLGSAIAWGAFG---YSG 297 (472)
Q Consensus 235 g~~~-------~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~--~~----~~-~~~g~Lyv~Gg~~g~~~---~~~ 297 (472)
|.-. +.-+-...+|..|.+ |+.+.... -+ |+ ...+.|+..||+-.... |.+
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trk------------weql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyN 207 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRK------------WEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYN 207 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccch------------heeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEee
Confidence 7532 125778899999944 98876521 12 22 36778888777533322 678
Q ss_pred eEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccCCCcc---------cccccccC-----CC-
Q 012060 298 YVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA---------MADLRNLG-----ED- 361 (472)
Q Consensus 298 sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~---------~~dl~s~e-----~d- 361 (472)
.|.+||..|=+ |+-.+| +...++|.|+|| .+.-.+.||+-||++-... ..|+=.+. .|
T Consensus 208 Dvy~FdLdtyk--W~Klepsga~PtpRSGcq~----~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dK 281 (521)
T KOG1230|consen 208 DVYAFDLDTYK--WSKLEPSGAGPTPRSGCQF----SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDK 281 (521)
T ss_pred eeEEEecccee--eeeccCCCCCCCCCCcceE----EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcc
Confidence 99999999999 999999 334899999998 4444999999999773221 12332222 33
Q ss_pred -CcEEeec-CCCCcccCCCCCCCcCeEEEEECC-EEEEecC
Q 012060 362 -PWVYMED-KNPSMISSSGNNNGENKLIHCYKN-QVFVGRG 399 (472)
Q Consensus 362 -~W~~~~~-~~~~m~~~~~~~~~~~~~~~~~~g-~l~~~~g 399 (472)
+|+.|.+ ..+| .+| ++.++++.-+ |-+..||
T Consensus 282 w~W~kvkp~g~kP--spR-----sgfsv~va~n~kal~FGG 315 (521)
T KOG1230|consen 282 WVWTKVKPSGVKP--SPR-----SGFSVAVAKNHKALFFGG 315 (521)
T ss_pred eeEeeccCCCCCC--CCC-----CceeEEEecCCceEEecc
Confidence 4555544 3344 888 4777776665 8888777
No 33
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.99 E-value=3.8e-10 Score=96.02 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCcEEEEEC-CeEEEEeHHHhhccCCCCccccccCCC-CCCCC--CEEE-cCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 14 NGDRVKLNVG-GKLFETTLSTIQSGGPDSLLYALSNRQ-SDEPN--PIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 14 ~~~~V~LnVG-G~~F~t~r~tLa~~~pssyf~amf~~~-~~~~~--~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
...|++|.|+ |+.|.+||.+|++. |+||+.||+.. ..+.. ++-+ +.+++.|+.+|+|+|++++.++ ...++.
T Consensus 9 ~~~D~~i~v~d~~~~~vhk~iL~~~--S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~ 85 (111)
T PF00651_consen 9 EFSDVTIRVGDGKTFYVHKNILAAR--SPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVE 85 (111)
T ss_dssp TS--EEEEETTTEEEEE-HHHHHHH--BHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHH
T ss_pred CCCCEEEEECCCEEEeechhhhhcc--chhhhhcccccccccccccccccccccccccccccccccCCcccCC-HHHHHH
Confidence 4569999999 89999999999998 88999999875 23332 3433 7999999999999999999876 238999
Q ss_pred HHHhhhhhcCcchHHhhhc
Q 012060 89 ELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~ 107 (472)
.++..|.+|+++.+.+.|+
T Consensus 86 ~ll~lA~~~~~~~L~~~~~ 104 (111)
T PF00651_consen 86 ELLELADKLQIPELKKACE 104 (111)
T ss_dssp HHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999996
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.89 E-value=5.2e-08 Score=99.49 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=128.7
Q ss_pred eEEee-----ccc---CCCCCccccccccceeeeeCCeEEEEcCcCCC-----CceecceeeeecCCCCccccCCC--Cc
Q 012060 151 ISVYD-----WNL---SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS-----GIHFYDLSSSRHVASAHWTDPSD--PR 215 (472)
Q Consensus 151 Ve~YD-----W~~---~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~-----g~~~l~sve~ydp~t~~W~~~a~--m~ 215 (472)
+..|| |.. +..|++|+.|.+| ++-.|.||+.||+ +. -.++++..+.+|..+++|+++.. -+
T Consensus 100 Ly~Yn~k~~eWkk~~spn~P~pRsshq~v---a~~s~~l~~fGGE-faSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNAPPPRSSHQAV---AVPSNILWLFGGE-FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeEEeccccceeEeccCCCcCCCccceeE---EeccCeEEEeccc-cCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 55566 976 6678889988654 3456899999997 32 23667888999999999999764 56
Q ss_pred CcccceeEEEEeCCeEEE--EecCCC----CCceeEEEeCCCcccccccccccCCCcccccccc---eeEE-----ec-C
Q 012060 216 IYRATVTAIADSPTTVFS--SLVCPH----KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK---LTWI-----PA-T 280 (472)
Q Consensus 216 ~~R~~~~ava~l~g~IYA--Gg~~~~----~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~---~~~~-----~~-~ 280 (472)
.+|+++- ..+...+|+. ||++.. ..|-|-+||..|-+ |+.+.|.. .+|. +. +
T Consensus 176 S~RSGHR-MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk------------W~Klepsga~PtpRSGcq~~vtpq 242 (521)
T KOG1230|consen 176 SPRSGHR-MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK------------WSKLEPSGAGPTPRSGCQFSVTPQ 242 (521)
T ss_pred CCCccce-eEEeeeeEEEEcceecCCCceEEeeeeEEEecccee------------eeeccCCCCCCCCCCcceEEecCC
Confidence 7899996 8999988777 555542 38999999999955 98887632 3333 34 8
Q ss_pred CeEEEEEEeCCCc-------c-ccceEEEEcCCC---CeeeeEEcCCCCC-CCCcccccccceeeeecCCeEEEEcc
Q 012060 281 GVVLGSAIAWGAF-------G-YSGYVRMWDPRS---GEVVWETNEPGSG-RSARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 281 g~Lyv~Gg~~g~~-------~-~~~sve~yDp~~---~~~vW~~~~~~~~-~~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
|-||+-||+.-.. | .+..+-..+|++ ++=+|+.+.|..+ .++|.|.++ ++.-+++-|..||
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv----~va~n~kal~FGG 315 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSV----AVAKNHKALFFGG 315 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeE----EEecCCceEEecc
Confidence 9999988864221 1 467899999988 3545777777434 699999987 5566778888998
No 35
>PF13964 Kelch_6: Kelch motif
Probab=98.87 E-value=2.7e-09 Score=78.65 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=42.3
Q ss_pred ccccccccceeeeeCCeEEEEcCcCCCC-ceecceeeeecCCCCccccCCCCcCcc
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYSSG-IHFYDLSSSRHVASAHWTDPSDPRIYR 218 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~~g-~~~l~sve~ydp~t~~W~~~a~m~~~R 218 (472)
+|.++ ++++++++||++|| ..+ ...++.+++|||.+++|+.+++|+.+|
T Consensus 1 pR~~~----s~v~~~~~iyv~GG--~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGH----SAVVVGGKIYVFGG--YDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccC----EEEEECCEEEEECC--CCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 46777 44569999999999 555 678899999999999999999999987
No 36
>smart00612 Kelch Kelch domain.
Probab=98.65 E-value=4.2e-08 Score=70.21 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=41.4
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT 229 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g 229 (472)
+||++|| +.+...++.+++|||.+++|..+++|+.+|..++ ++++++
T Consensus 1 ~iyv~GG--~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~g 47 (47)
T smart00612 1 KIYVVGG--FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHG-VAVING 47 (47)
T ss_pred CEEEEeC--CCCCceeeeEEEECCCCCeEccCCCCCCccccce-EEEeCC
Confidence 4899999 6666678999999999999999999999999995 787764
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.61 E-value=1.7e-08 Score=73.05 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=39.1
Q ss_pred ccccccccceeeeeCCeEEEEcCcCCCC-ceecceeeeecCCCCccccCCCCc
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYSSG-IHFYDLSSSRHVASAHWTDPSDPR 215 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~~g-~~~l~sve~ydp~t~~W~~~a~m~ 215 (472)
+|++++ ++++++.||++|| +++ ...++++++||+.+++|..+++|+
T Consensus 1 pR~~~~----~~~~~~~iyv~GG--~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHA----AVVVGNKIYVIGG--YDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEE----EEEETTEEEEEEE--BESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCE----EEEECCEEEEEee--ecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 467774 4569999999999 666 788999999999999999999985
No 38
>PF13964 Kelch_6: Kelch motif
Probab=98.54 E-value=7.9e-08 Score=70.80 Aligned_cols=47 Identities=11% Similarity=-0.085 Sum_probs=40.1
Q ss_pred cccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccceeE
Q 012060 217 YRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW 276 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~ 276 (472)
+|..++ +++++++||+ ||++. ..++.||+|||+|+ +|+.+++|+.+|
T Consensus 1 pR~~~s-~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~------------~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHS-AVVVGGKIYVFGGYDNSGKYSNDVERYDPETN------------TWEQLPPMPTPR 50 (50)
T ss_pred CCccCE-EEEECCEEEEECCCCCCCCccccEEEEcCCCC------------cEEECCCCCCCC
Confidence 478885 8999999999 88876 34899999999993 499999998764
No 39
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.52 E-value=1.8e-08 Score=102.36 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCE-EEcCChhhHHHHhhccccCcccCCCCC------
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPI-FIDRDPDVFSVLLSLLRSNRLPSTASR------ 84 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~v-fiDrdp~~F~~IL~flrtg~l~~~~~~------ 84 (472)
.-.||++.|..++|++||.+||+. ++||+||.-+. ++.+..| ..+-+.++|+.+|.|+|||++.+....
T Consensus 43 ~y~DVtfvve~~rfpAHRvILAaR--s~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld 120 (620)
T KOG4350|consen 43 DYSDVTFVVEDTRFPAHRVILAAR--SSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLD 120 (620)
T ss_pred cccceEEEEeccccchhhhhHHHH--HHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHH
Confidence 456999999999999999999998 99999997554 5666677 457789999999999999998765311
Q ss_pred ---------------------------cchHHHHhhhhhcCcchHHhhhc
Q 012060 85 ---------------------------FSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 85 ---------------------------~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
.|+-.++++|.+||+.++.+.|+
T Consensus 121 ~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~ 170 (620)
T KOG4350|consen 121 YLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCM 170 (620)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHH
Confidence 34555667889999999999998
No 40
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.50 E-value=2.7e-06 Score=89.04 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=122.2
Q ss_pred cEEEeeeCceEE--ee------------ccc--------CCCCCccccccccceeeeeCCeEEEEcCcCCCCc-------
Q 012060 142 SLWIAHGGQISV--YD------------WNL--------SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGI------- 192 (472)
Q Consensus 142 ~l~va~GG~Ve~--YD------------W~~--------~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~------- 192 (472)
.|+ ++||+||+ |. |.. .+.+-+|.+| +..+.+++.|+.||...+..
T Consensus 93 ril-vFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGH----SFsl~gnKcYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 93 RIL-VFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGH----SFSLVGNKCYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred eEE-EEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCc----eeEEeccEeEEeccccccccCcccccc
Confidence 455 78898776 33 542 2445678888 45568999999999521111
Q ss_pred eecceeeee----cCCCCccccC---CCCcCcccceeEEEEe--C---CeEEE-EecCCCCCceeEEEeCCCcccccccc
Q 012060 193 HFYDLSSSR----HVASAHWTDP---SDPRIYRATVTAIADS--P---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIG 259 (472)
Q Consensus 193 ~~l~sve~y----dp~t~~W~~~---a~m~~~R~~~~ava~l--~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~ 259 (472)
+.||..... -+.-.-|... ...+.+|.++.||.-. | .++|+ ||-++-+|......|.+|+.
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~------ 241 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLT------ 241 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceee------
Confidence 223322211 1333457543 3566778888644321 2 36899 99998889999999999965
Q ss_pred cccCCCccc-----ccccceeEE---ecCCeEEEEEEeC------CC-------ccccceEEEEcCCCCeeeeEEcCC--
Q 012060 260 RQSGASSKN-----MAVGKLTWI---PATGVVLGSAIAW------GA-------FGYSGYVRMWDPRSGEVVWETNEP-- 316 (472)
Q Consensus 260 ~~~~~~W~~-----v~~m~~~~~---~~~g~Lyv~Gg~~------g~-------~~~~~sve~yDp~~~~~vW~~~~~-- 316 (472)
|+. ++||.+..+ ...|++|+.||+- -. -.+-++.-||+..+.. |+..-.
T Consensus 242 ------W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~--W~tl~~d~ 313 (830)
T KOG4152|consen 242 ------WNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMA--WETLLMDT 313 (830)
T ss_pred ------cccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchh--eeeeeecc
Confidence 765 456655443 3899999998841 11 0034589999999999 998632
Q ss_pred ---CCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 317 ---GSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 317 ---~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
-...+.|.||| ++..+.+||.--|.||-
T Consensus 314 ~ed~tiPR~RAGHC-----AvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 314 LEDNTIPRARAGHC-----AVAIGTRLYIWSGRDGY 344 (830)
T ss_pred ccccccccccccce-----eEEeccEEEEEeccchh
Confidence 11357899999 47779999999998863
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.43 E-value=2.7e-07 Score=66.76 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=37.4
Q ss_pred cccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccc
Q 012060 217 YRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK 273 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~ 273 (472)
+|++++ +++++++||+ ||.+. ..+++||+|||.+++ |+.+++|.
T Consensus 1 pR~~~~-~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~------------W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHA-AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNT------------WEELPPMP 47 (47)
T ss_dssp -BBSEE-EEEETTEEEEEEEBESTSSBEEEEEEEETTTTE------------EEEEEEES
T ss_pred CCccCE-EEEECCEEEEEeeecccCceeeeEEEEeCCCCE------------EEEcCCCC
Confidence 588885 9999999999 88876 359999999999944 99999984
No 42
>smart00612 Kelch Kelch domain.
Probab=98.14 E-value=3.4e-06 Score=60.10 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=35.1
Q ss_pred eEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 282 VVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 282 ~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
+||++||.++.. ..+++|+|||++++ |+..++ |..+|..+++
T Consensus 1 ~iyv~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~--~~~~r~~~~~ 42 (47)
T smart00612 1 KIYVVGGFDGGQ-RLKSVEVYDPETNK--WTPLPS--MPTPRSGHGV 42 (47)
T ss_pred CEEEEeCCCCCc-eeeeEEEECCCCCe--EccCCC--CCCccccceE
Confidence 489999986532 56799999999999 999998 5888988874
No 43
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.12 E-value=1.3e-06 Score=88.09 Aligned_cols=88 Identities=27% Similarity=0.411 Sum_probs=74.0
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccC-cccCCCCCcchH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSN-RLPSTASRFSKQ 88 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg-~l~~~~~~~~v~ 88 (472)
...++|+|||.|-+|+|...||++ +|+++|..--.+. .+..+|||+||+.-.|+.||.|+.+| +|. .|-+....
T Consensus 58 ~~~ervvINisGlRFeTql~TL~q-fP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlr-RPvnVPlD 135 (507)
T KOG1545|consen 58 CCCERVVINISGLRFETQLKTLAQ-FPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLR-RPVNVPLD 135 (507)
T ss_pred ccccEEEEEeccceehHHHHHHhh-CchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceec-CCccccHH
Confidence 345899999999999999999999 9999988653321 56789999999999999999999886 566 34456778
Q ss_pred HHHhhhhhcCcchH
Q 012060 89 ELADEALYYGIDSQ 102 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l 102 (472)
-+++|.+||||.+-
T Consensus 136 iF~eEirFyqlG~e 149 (507)
T KOG1545|consen 136 IFLEEIRFYQLGDE 149 (507)
T ss_pred HHHHHHHHHHhhHH
Confidence 89999999999873
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.07 E-value=5.3e-06 Score=60.84 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=38.0
Q ss_pred ccccccccceeeeeCCeEEEEcCcCC---CCceecceeeeecCCCCccccCCCCc
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYS---SGIHFYDLSSSRHVASAHWTDPSDPR 215 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~---~g~~~l~sve~ydp~t~~W~~~a~m~ 215 (472)
+|.+| ++++++++||++|| + .+....+.++.||+.+++|+.+++|.
T Consensus 1 ~r~~h----s~~~~~~kiyv~GG--~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGH----SAVVLDGKIYVFGG--YGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred Cccce----EEEEECCEEEEECC--cccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 46666 34569999999999 5 56677889999999999999999873
No 45
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=0.00027 Score=71.79 Aligned_cols=231 Identities=13% Similarity=0.122 Sum_probs=135.3
Q ss_pred CcEEEeee--Cc-eEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCcCC---CCceecceeeeecCCC
Q 012060 141 GSLWIAHG--GQ-ISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSDYS---SGIHFYDLSSSRHVAS 205 (472)
Q Consensus 141 g~l~va~G--G~-Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~---~g~~~l~sve~ydp~t 205 (472)
..+||..| |. -...| |+. +.-+ ..|-+.- .++++++||+.||... .-...++.+.+|||.+
T Consensus 47 ~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~----~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ 122 (381)
T COG3055 47 DTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAV----AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST 122 (381)
T ss_pred ceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccch----heeeCCeEEEeeccccCCCCCceEeeeeEEecCCC
Confidence 47888777 32 22233 987 5444 4455532 2469999999999310 1245688999999999
Q ss_pred CccccCCCCcCcccceeE-EEEeCC-eEEE-EecCC----------------------------------C-CCceeEEE
Q 012060 206 AHWTDPSDPRIYRATVTA-IADSPT-TVFS-SLVCP----------------------------------H-KENSVLLI 247 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~a-va~l~g-~IYA-Gg~~~----------------------------------~-~l~sVE~Y 247 (472)
|+|..+.. +.+|-.+++ .+.+++ +||. ||.+. . ...-|-.|
T Consensus 123 nsW~kl~t-~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy 201 (381)
T COG3055 123 NSWHKLDT-RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY 201 (381)
T ss_pred Chhheecc-ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence 99998743 334444443 345666 7888 87431 0 13457788
Q ss_pred eCCCcccccccccccCCCcccccccceeEEe--------cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIP--------ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--------~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
||.+ +.|+..... ++++ -+|.|..+-|.--+.=...-+-.+|...+..-|........
T Consensus 202 ~p~~------------n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 202 DPST------------NQWRNLGEN--PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred cccc------------chhhhcCcC--cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 8888 448887531 2221 35534443332122102336778888888777988854322
Q ss_pred CCCcccccccceeeeecCCeEEEEcccC--CC--------ccccc-ccc--------cCCCCcEEeecCCCCcccCCCCC
Q 012060 320 RSARFGDSFADVDVDVDELTLFKICSKS--GD--------IAMAD-LRN--------LGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~~~~~iy~vGg~~--g~--------~~~~d-l~s--------~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
...---.++|=-=..-.++.+-+.||.. |. .+..+ |.. ...+.|..+.. |+.+.
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~Ge----Lp~~l--- 340 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGE----LPQGL--- 340 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecc----cCCCc---
Confidence 2222213331111335567777777733 11 11001 210 11889999998 66655
Q ss_pred CCcCeEEEEECCEEEEecC
Q 012060 381 NGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~~g 399 (472)
++-....+++.||+.+|
T Consensus 341 --~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 341 --AYGVSLSYNNKVLLIGG 357 (381)
T ss_pred --cceEEEecCCcEEEEcc
Confidence 46667789999999999
No 46
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.96 E-value=1.3e-05 Score=58.70 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=40.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD 226 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~ 226 (472)
++.+|+.||....+...++.+..||+.+++|+.+++++.+|++++ +++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~-~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHT-ATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceE-EEE
Confidence 478999999321267889999999999999999999999999996 654
No 47
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.82 E-value=0.00015 Score=76.22 Aligned_cols=213 Identities=14% Similarity=0.075 Sum_probs=121.6
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcccceeEEEEeCCeEEE-E
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-G 234 (472)
.+-+.+|.+|-++ ++...|.+.|| ..-...+....|+..+|+|.-.+ +.+..-+.++ ....+..||+ |
T Consensus 27 GPvPrpRHGHRAV----aikELiviFGG---GNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~G-fvcdGtrilvFG 98 (830)
T KOG4152|consen 27 GPVPRPRHGHRAV----AIKELIVIFGG---GNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG-FVCDGTRILVFG 98 (830)
T ss_pred CCCCCccccchhe----eeeeeEEEecC---CcccchhhhhhhccccceeecchhcCCCCCchhhcc-eEecCceEEEEc
Confidence 3455666666433 48889999998 33356778889999999998643 3444445554 4445667999 7
Q ss_pred ecCCCCCceeEEEeCCCcccccccccccCCCcccccc-------cceeEE-----ecCCeEEEEEEeCCCc--------c
Q 012060 235 LVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-------GKLTWI-----PATGVVLGSAIAWGAF--------G 294 (472)
Q Consensus 235 g~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-------m~~~~~-----~~~g~Lyv~Gg~~g~~--------~ 294 (472)
|--..--.|=+-|.... .| =+|+.+.| -..+|+ ...++-|+.||....+ .
T Consensus 99 GMvEYGkYsNdLYELQa-------sR---WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 99 GMVEYGKYSNDLYELQA-------SR---WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred cEeeeccccchHHHhhh-------hh---hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccch
Confidence 63221122334444443 11 23655544 122233 3789999988742111 1
Q ss_pred ccceEEEEc--CCCCeeeeEEcCC-CCCCCCcccccccceeeeec------CCeEEEEcccCCCcccccccccC--CCCc
Q 012060 295 YSGYVRMWD--PRSGEVVWETNEP-GSGRSARFGDSFADVDVDVD------ELTLFKICSKSGDIAMADLRNLG--EDPW 363 (472)
Q Consensus 295 ~~~sve~yD--p~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~------~~~iy~vGg~~g~~~~~dl~s~e--~d~W 363 (472)
|+++..... |-++.+.|+..-- +....+|--|. ++.+ ..++|+.||.+|. ...||=.+. +-.|
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHT-----AViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W 242 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHT-----AVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTW 242 (830)
T ss_pred hhcceEEEEeccCCceEEEecccccCCCCCCcccce-----eEEEEeccCCcceEEEEcccccc-cccceeEEecceeec
Confidence 455444444 5567777986533 44577888886 3444 4689999998864 333554333 5557
Q ss_pred EEe-----ecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 364 VYM-----EDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 364 ~~~-----~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
+.. +|+++++...- .-+-+..+++|||=..+.
T Consensus 243 ~kp~~~G~~PlPRSLHsa~----~IGnKMyvfGGWVPl~~~ 279 (830)
T KOG4152|consen 243 NKPSLSGVAPLPRSLHSAT----TIGNKMYVFGGWVPLVMD 279 (830)
T ss_pred ccccccCCCCCCcccccce----eecceeEEecceeeeecc
Confidence 653 44444333222 234455555555544444
No 48
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.80 E-value=2.7e-05 Score=77.04 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=76.4
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRF 85 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~ 85 (472)
...+.+++.|.+.+|...+.+|+. .|.+++..||... .++.+||.. ++...+|+.||+|+.+|.|..+ +..
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~-~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP-~~v 170 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTS-KPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCP-SSV 170 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecC-CcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCC-CCC
Confidence 467899999999999999999999 7999999999754 467788864 6899999999999999999986 568
Q ss_pred chHHHHhhhhhcCcch
Q 012060 86 SKQELADEALYYGIDS 101 (472)
Q Consensus 86 ~v~~Ll~eA~~~ql~~ 101 (472)
.+.+|.++++|+-|.-
T Consensus 171 SvpELrEACDYLlipF 186 (438)
T KOG3840|consen 171 SVSELREACDYLLVPF 186 (438)
T ss_pred chHHHHhhcceEEeec
Confidence 9999999999987765
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.75 E-value=4e-05 Score=56.14 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=35.9
Q ss_pred cccceeEEEEeCCeEEE-Eec---CC-CCCceeEEEeCCCcccccccccccCCCccccccc
Q 012060 217 YRATVTAIADSPTTVFS-SLV---CP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG 272 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYA-Gg~---~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m 272 (472)
+|..++ +++++++||+ ||+ .. ...+.+++||++|++ |+.+++|
T Consensus 1 ~r~~hs-~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~------------W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHS-AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ------------WTELSPM 48 (49)
T ss_pred CccceE-EEEECCEEEEECCcccCCCCcccceeEEEECCCCE------------EeecCCC
Confidence 477885 8999999999 888 22 358999999999944 9999886
No 50
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=97.67 E-value=2.7e-05 Score=81.35 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=79.1
Q ss_pred CCCcEEEEEC-----CeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE-EcCChhhHHHHhhccccCcccCCCCCc
Q 012060 14 NGDRVKLNVG-----GKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRF 85 (472)
Q Consensus 14 ~~~~V~LnVG-----G~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~ 85 (472)
...|+++.|| -++|++||-+|+.. |+-|.+||... ++...++- -|++|.+|..+|.|+|.-.+.+.+ +
T Consensus 113 ~~adv~fivg~~~~~~q~~paHk~vla~g--S~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~--d 188 (521)
T KOG2075|consen 113 LLADVHFIVGEEDGGSQRIPAHKLVLADG--SDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAA--D 188 (521)
T ss_pred ccceeEEEeccCCCcccccchhhhhhhcc--hHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhH--H
Confidence 4458888887 37999999999997 89999999876 45567775 499999999999999999888866 8
Q ss_pred chHHHHhhhhhcCcchHHhhhc
Q 012060 86 SKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 86 ~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
++-.+|.+|+-|-+..+.+.|.
T Consensus 189 tvi~tl~~AkKY~VpaLer~CV 210 (521)
T KOG2075|consen 189 TVITTLYAAKKYLVPALERQCV 210 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999997
No 51
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.00069 Score=68.91 Aligned_cols=193 Identities=19% Similarity=0.170 Sum_probs=121.0
Q ss_pred eeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCC-CcCcccceeEEEEeCCeEEE-EecCC------CCCceeEEE
Q 012060 176 HVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD-PRIYRATVTAIADSPTTVFS-SLVCP------HKENSVLLI 247 (472)
Q Consensus 176 ~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~-m~~~R~~~~ava~l~g~IYA-Gg~~~------~~l~sVE~Y 247 (472)
.+++.+||.=| ..|...+ ++--+-....|++++. +-.+|.... .++++++||+ ||... ..++.+=+|
T Consensus 44 ~ig~~~YVGLG--s~G~afy--~ldL~~~~k~W~~~a~FpG~~rnqa~-~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y 118 (381)
T COG3055 44 LIGDTVYVGLG--SAGTAFY--VLDLKKPGKGWTKIADFPGGARNQAV-AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRY 118 (381)
T ss_pred eecceEEEEec--cCCccce--ehhhhcCCCCceEcccCCCcccccch-heeeCCeEEEeeccccCCCCCceEeeeeEEe
Confidence 46789998766 4453322 1122233467999986 457788863 7889999999 87653 127899999
Q ss_pred eCCCcccccccccccCCCccccccccee------EEecCC-eEEEEEEeCCC-----cc---------------------
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLT------WIPATG-VVLGSAIAWGA-----FG--------------------- 294 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~------~~~~~g-~Lyv~Gg~~g~-----~~--------------------- 294 (472)
||.+ |+|+.....+-. ...+++ .||..||.+-. +.
T Consensus 119 ~p~~------------nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~ 186 (381)
T COG3055 119 DPST------------NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD 186 (381)
T ss_pred cCCC------------ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence 9999 449988663222 112555 89988875311 00
Q ss_pred -------ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC--------
Q 012060 295 -------YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-------- 359 (472)
Q Consensus 295 -------~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-------- 359 (472)
....|-.|||.+++ |...... .-..++|.+ ++-.+++|-.|-|.-=+ -||+.|
T Consensus 187 ~~~~dy~~n~ev~sy~p~~n~--W~~~G~~-pf~~~aGsa-----~~~~~n~~~lInGEiKp----GLRt~~~k~~~~~~ 254 (381)
T COG3055 187 KKAEDYFFNKEVLSYDPSTNQ--WRNLGEN-PFYGNAGSA-----VVIKGNKLTLINGEIKP----GLRTAEVKQADFGG 254 (381)
T ss_pred CCHHHhcccccccccccccch--hhhcCcC-cccCccCcc-----eeecCCeEEEEcceecC----CccccceeEEEecc
Confidence 24578899999999 9887631 245566655 46678878888873311 177776
Q ss_pred -CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 360 -EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 360 -~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
.-+|..+++++.+.....+|.+.... --.+|.+.+.+|
T Consensus 255 ~~~~w~~l~~lp~~~~~~~eGvAGaf~--G~s~~~~lv~GG 293 (381)
T COG3055 255 DNLKWLKLSDLPAPIGSNKEGVAGAFS--GKSNGEVLVAGG 293 (381)
T ss_pred CceeeeeccCCCCCCCCCccccceecc--ceeCCeEEEecC
Confidence 55799998866663333333211111 134455555555
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.62 E-value=4.2e-05 Score=55.76 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=27.4
Q ss_pred ccccccccceeeee-CCeEEEEcCcCCCCc-eecceeeeecCCCCccccCCCCc
Q 012060 164 VRTHLDNITSIRHV-WSDVAAVGSDYSSGI-HFYDLSSSRHVASAHWTDPSDPR 215 (472)
Q Consensus 164 ~R~~~~~v~~v~~l-~~~lYavGG~~~~g~-~~l~sve~ydp~t~~W~~~a~m~ 215 (472)
+|..|. ++.+ ++.||++|| .+.. ..++.++.||+.+++|+.+++|+
T Consensus 1 pR~~h~----~~~~~~~~i~v~GG--~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHS----AVSIGDNSIYVFGG--RDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-E----EEEE-TTEEEEE----EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEE----EEEEeCCeEEEECC--CCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 466664 3346 589999999 4443 68999999999999999998875
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.50 E-value=0.027 Score=58.86 Aligned_cols=236 Identities=14% Similarity=0.212 Sum_probs=121.2
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCC--CCccccCCCCc--------CcccceeEEEEeCCeEEEEecCCCCCcee
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTDPSDPR--------IYRATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~~a~m~--------~~R~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
++.++.||+... +| .+.++|.. ...|..-.+-. ..+... +.++.++.||+|..+ ..+
T Consensus 66 vv~~~~vy~~~~---~g-----~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~v~v~~~~----g~l 132 (394)
T PRK11138 66 AVAYNKVYAADR---AG-----LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSG-GVTVAGGKVYIGSEK----GQV 132 (394)
T ss_pred EEECCEEEEECC---CC-----eEEEEECCCCcEeeEEcCCCccccccccccccccc-ccEEECCEEEEEcCC----CEE
Confidence 457899998775 33 35666654 34476422110 112222 267788999996433 357
Q ss_pred EEEeCCCcccccccccccCCCccccccccee--EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAVGKLT--WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~--~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
-++|++| |+ ..|+.-.+.... -...++++|+..+ .+.+.++|+++++++|+..........
T Consensus 133 ~ald~~t-------G~---~~W~~~~~~~~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 133 YALNAED-------GE---VAWQTKVAGEALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred EEEECCC-------CC---CcccccCCCceecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccc
Confidence 8999999 55 558775442111 1225788887532 357999999999999998754211111
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC-cccCCCCCCCcCeEEEEECCEEEEec-CC
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS-MISSSGNNNGENKLIHCYKNQVFVGR-GG 400 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~~g~l~~~~-g~ 400 (472)
|.... -++.++.+|+. ..+|.+...|..+ +.-.|..--..+.. ....+.. .....-.+.++.||+.. +|
T Consensus 196 ~~~~s-----P~v~~~~v~~~-~~~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~~--~~~~sP~v~~~~vy~~~~~g 266 (394)
T PRK11138 196 RGESA-----PATAFGGAIVG-GDNGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRLV--DVDTTPVVVGGVVYALAYNG 266 (394)
T ss_pred cCCCC-----CEEECCEEEEE-cCCCEEEEEEccC-ChhhheeccccCCCccchhccc--ccCCCcEEECCEEEEEEcCC
Confidence 21111 24456777754 3444433223221 13457642111110 0000000 01122346789999865 45
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec--------cceeEEeecCCC
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED--------VEGIEVWESSNL 465 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~--------~~~~~vw~~~~~ 465 (472)
.+-.++.. -.+.+.++.+ + ....+...|+++|+.-.+ ..|-++|..+.+
T Consensus 267 ~l~ald~~-------tG~~~W~~~~-~--------~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 323 (394)
T PRK11138 267 NLVALDLR-------SGQIVWKREY-G--------SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL 323 (394)
T ss_pred eEEEEECC-------CCCEEEeecC-C--------CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc
Confidence 44443321 1122333321 1 112345566677765433 356789987653
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.38 E-value=0.034 Score=57.47 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=101.1
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.++.+|+.+. +| .+.++|+.+ ..|..-.+-. ... +.++-++.+|++..+ ..+-++|+.+
T Consensus 62 ~v~~~~v~v~~~---~g-----~v~a~d~~tG~~~W~~~~~~~---~~~-~p~v~~~~v~v~~~~----g~l~ald~~t- 124 (377)
T TIGR03300 62 AVAGGKVYAADA---DG-----TVVALDAETGKRLWRVDLDER---LSG-GVGADGGLVFVGTEK----GEVIALDAED- 124 (377)
T ss_pred EEECCEEEEECC---CC-----eEEEEEccCCcEeeeecCCCC---ccc-ceEEcCCEEEEEcCC----CEEEEEECCC-
Confidence 446888887654 33 467777654 4487533221 111 256668899996433 3688999988
Q ss_pred ccccccccccCCCcccccccceeE--EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTW--IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~--~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
|+ -.|+.-.+..... ...++.+|+... .+.+.+||+++++++|+..........+....
T Consensus 125 ------G~---~~W~~~~~~~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s--- 185 (377)
T TIGR03300 125 ------GK---ELWRAKLSSEVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSAS--- 185 (377)
T ss_pred ------Cc---EeeeeccCceeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCC---
Confidence 44 3476543311111 125678887532 35799999999999999876521111121122
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcc-cCCCCCCCcCeEEEEECCEEEEec-CCeEEEeec
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMI-SSSGNNNGENKLIHCYKNQVFVGR-GGSLEVWSR 407 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~~g~l~~~~-g~~~~v~~~ 407 (472)
.++.++.+| +|..++.+...|+++ +.-.|..--..+.... ..+.. .......+.++.||+.. +|.+-.|+.
T Consensus 186 --p~~~~~~v~-~~~~~g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~~~--~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 186 --PVIADGGVL-VGFAGGKLVALDLQT-GQPLWEQRVALPKGRTELERLV--DVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred --CEEECCEEE-EECCCCEEEEEEccC-CCEeeeeccccCCCCCchhhhh--ccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 234456665 555555544334332 1334754211000000 00000 01223345688999874 466666654
No 55
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.18 E-value=0.00028 Score=66.29 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=70.8
Q ss_pred CCcEEEEEC---CeEEEEeHHHhhccCCCCccccccCCCCCCCCCEE-EcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 15 GDRVKLNVG---GKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 15 ~~~V~LnVG---G~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
=.|+++.++ .+.+++|+-+|++. +=|..+-+....+..+.- -|.||++|...|.|+||.+|.+..+..-..++
T Consensus 66 fSDlk~K~~gns~k~i~AHKfVLAAR---sD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el 142 (280)
T KOG4591|consen 66 FSDLKFKFAGNSDKHIPAHKFVLAAR---SDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLEL 142 (280)
T ss_pred ccceeEEecCCccccCchhhhhhhhh---cchhhhccCCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHH
Confidence 358999999 47899999999995 345555443222223333 38999999999999999999988765667789
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
.+.|.-||++.+...|.
T Consensus 143 ~e~An~FqLe~Lke~C~ 159 (280)
T KOG4591|consen 143 CELANRFQLELLKERCE 159 (280)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999997
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.11 E-value=0.067 Score=55.92 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=81.5
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
-++.++.||++..+ ..+-++|+.+ |+ ..|+.-......-...++.||++.. .+.+.++|
T Consensus 252 P~v~~~~vy~~~~~----g~l~ald~~t-------G~---~~W~~~~~~~~~~~~~~~~vy~~~~-------~g~l~ald 310 (394)
T PRK11138 252 PVVVGGVVYALAYN----GNLVALDLRS-------GQ---IVWKREYGSVNDFAVDGGRIYLVDQ-------NDRVYALD 310 (394)
T ss_pred cEEECCEEEEEEcC----CeEEEEECCC-------CC---EEEeecCCCccCcEEECCEEEEEcC-------CCeEEEEE
Confidence 34568999994333 2577889998 44 3476532211112346889998642 35799999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEE-eecCCCCcccCCCCCCC
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVY-MEDKNPSMISSSGNNNG 382 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~-~~~~~~~m~~~~~~~~~ 382 (472)
+.+++.+|+..... .+...+ .++.++.|| ++..+|.+...|..+= +=.|.. +. ...
T Consensus 311 ~~tG~~~W~~~~~~----~~~~~s-----p~v~~g~l~-v~~~~G~l~~ld~~tG-~~~~~~~~~-------~~~----- 367 (394)
T PRK11138 311 TRGGVELWSQSDLL----HRLLTA-----PVLYNGYLV-VGDSEGYLHWINREDG-RFVAQQKVD-------SSG----- 367 (394)
T ss_pred CCCCcEEEcccccC----CCcccC-----CEEECCEEE-EEeCCCEEEEEECCCC-CEEEEEEcC-------CCc-----
Confidence 99999999765331 111222 245689998 4566666544333321 212322 11 111
Q ss_pred cCeEEEEECCEEEEe-cCCeEEEeec
Q 012060 383 ENKLIHCYKNQVFVG-RGGSLEVWSR 407 (472)
Q Consensus 383 ~~~~~~~~~g~l~~~-~g~~~~v~~~ 407 (472)
....-++.+++||+. .+|.|-.+..
T Consensus 368 ~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 FLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ceeCCEEECCEEEEEeCCceEEEEeC
Confidence 234445689999988 5567766654
No 57
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=96.98 E-value=0.0013 Score=47.96 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=37.1
Q ss_pred CCeEEEEEEeC-CCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 280 TGVVLGSAIAW-GAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 280 ~g~Lyv~Gg~~-g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
++.||+.||.+ .....++++.+||+.+++ |+..++ +..+|.+|++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~--W~~~~~--~P~~R~~h~~ 46 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT--WTRIGD--LPPPRSGHTA 46 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCE--EEECCC--CCCCccceEE
Confidence 47899999987 223367899999999999 999966 6889999984
No 58
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.92 E-value=0.0008 Score=48.92 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=26.0
Q ss_pred cccceeEEEEe-CCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccc
Q 012060 217 YRATVTAIADS-PTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK 273 (472)
Q Consensus 217 ~R~~~~ava~l-~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~ 273 (472)
+|.+++ ++.+ ++.||+ ||.+. ..++.+++||+.+++ |+.+++|.
T Consensus 1 pR~~h~-~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~------------W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHS-AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNT------------WTRLPSMP 48 (49)
T ss_dssp --BS-E-EEEE-TTEEEEE--EEE-TEE---EEEEETTTTE------------EEE--SS-
T ss_pred CcceEE-EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCE------------EEECCCCC
Confidence 478885 6666 589999 88766 369999999999944 99997763
No 59
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.92 E-value=0.00045 Score=71.00 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=81.5
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE--E-c--CChhhHHHHhhccccCcccCCCCCc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF--I-D--RDPDVFSVLLSLLRSNRLPSTASRF 85 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf--i-D--rdp~~F~~IL~flrtg~l~~~~~~~ 85 (472)
..+.||.|..=|+.-+.|+.-|.+ +.||.+||++- +++.+.|- | | +|..+|+..+.=+|..++.+.. .
T Consensus 67 ~enSDv~l~alg~eWrlHk~yL~Q---S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l--~ 141 (488)
T KOG4682|consen 67 GENSDVILEALGFEWRLHKPYLFQ---SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL--S 141 (488)
T ss_pred CCCcceehhhccceeeeeeeeeec---cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH--H
Confidence 356799999999999999999988 67999999875 55566552 3 3 6889999999999999999876 8
Q ss_pred chHHHHhhhhhcCcchHHhhhc--CCCCCCC
Q 012060 86 SKQELADEALYYGIDSQLKSAM--SPPPLQG 114 (472)
Q Consensus 86 ~v~~Ll~eA~~~ql~~l~~~c~--l~~~l~~ 114 (472)
.+..++.+|.++|++.+++.|. +...|.+
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~lsp 172 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETLSP 172 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCh
Confidence 8999999999999999999997 4444444
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.86 E-value=0.31 Score=50.35 Aligned_cols=237 Identities=22% Similarity=0.267 Sum_probs=124.3
Q ss_pred CcEEEeee-CceEEee-------ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC--Cccc
Q 012060 141 GSLWIAHG-GQISVYD-------WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWT 209 (472)
Q Consensus 141 g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~ 209 (472)
+.+|+... |.+.++| |+. ..-. . .+ ..++.++.+|+..+ +| .+.++|+.+ ..|+
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~---~~---~p~v~~~~v~v~~~---~g-----~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSSE-V---LS---PPLVANGLVVVRTN---DG-----RLTALDAATGERLWT 170 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCce-e---ec---CCEEECCEEEEECC---CC-----eEEEEEcCCCceeeE
Confidence 55663221 4588888 765 2211 1 11 22335777777554 33 355667654 3476
Q ss_pred cCCCCcC--cccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc--------------cc
Q 012060 210 DPSDPRI--YRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV--------------GK 273 (472)
Q Consensus 210 ~~a~m~~--~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~--------------m~ 273 (472)
....... .+.... .++.++.+|++..+ ..+-.+|+.+ |+ -.|+.-.. ..
T Consensus 171 ~~~~~~~~~~~~~~s-p~~~~~~v~~~~~~----g~v~ald~~t-------G~---~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 171 YSRVTPALTLRGSAS-PVIADGGVLVGFAG----GKLVALDLQT-------GQ---PLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred EccCCCceeecCCCC-CEEECCEEEEECCC----CEEEEEEccC-------CC---EeeeeccccCCCCCchhhhhccCC
Confidence 5332211 122222 45567888885433 2577889988 43 33643211 00
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
.+ ...++.||+++. .+.+.+||+++++++|+...+. ... .++.++.||+.. .+|.+...
T Consensus 236 ~p-~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~~~-------~~~-----p~~~~~~vyv~~-~~G~l~~~ 294 (377)
T TIGR03300 236 DP-VVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDASS-------YQG-----PAVDDNRLYVTD-ADGVVVAL 294 (377)
T ss_pred cc-EEECCEEEEEEc-------CCEEEEEECCCCcEEEeeccCC-------ccC-----ceEeCCEEEEEC-CCCeEEEE
Confidence 11 125788888643 3479999999999999886331 122 256789999654 45544432
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEe-cCCeEEEeeccccccccccCCcceeeccccccccC
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVG-RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDS 432 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 432 (472)
|..+ +.-.|..-. +.. + ......+.++.||+. ..|.|-+++... .+.+.|- -++
T Consensus 295 d~~t-G~~~W~~~~-----~~~-~-----~~ssp~i~g~~l~~~~~~G~l~~~d~~t-------G~~~~~~-~~~----- 349 (377)
T TIGR03300 295 DRRS-GSELWKNDE-----LKY-R-----QLTAPAVVGGYLVVGDFEGYLHWLSRED-------GSFVARL-KTD----- 349 (377)
T ss_pred ECCC-CcEEEcccc-----ccC-C-----ccccCEEECCEEEEEeCCCEEEEEECCC-------CCEEEEE-EcC-----
Confidence 3321 133465421 111 1 122334578899986 457888886531 1222222 111
Q ss_pred CCCceEEEeecCceEEEeeec
Q 012060 433 GRGAISRIDAGGNRLFVSRED 453 (472)
Q Consensus 433 ~~~~i~~~~~gg~r~f~~~~~ 453 (472)
..+....-.+-|++||+.-.|
T Consensus 350 ~~~~~~sp~~~~~~l~v~~~d 370 (377)
T TIGR03300 350 GSGIASPPVVVGDGLLVQTRD 370 (377)
T ss_pred CCccccCCEEECCEEEEEeCC
Confidence 112345556667889876544
No 61
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=96.72 E-value=0.00081 Score=74.34 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--------------CCCCCCEEE-cCChhhHHHHhhccccCccc
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--------------SDEPNPIFI-DRDPDVFSVLLSLLRSNRLP 79 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--------------~~~~~~vfi-Drdp~~F~~IL~flrtg~l~ 79 (472)
=-||++.||+..|++||=+|++. +++|+.+|-.. ......+|+ |+.|.+|++||+|+||..+-
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~r--s~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~ 635 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCAR--SSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLL 635 (1267)
T ss_pred cceEEEEecCeecccceEEEEec--cHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccccc
Confidence 35899999999999999999997 88999986421 122234555 79999999999999998543
Q ss_pred CC--CC----------CcchHH-------HHhhhhhcCcchHHhhhc
Q 012060 80 ST--AS----------RFSKQE-------LADEALYYGIDSQLKSAM 107 (472)
Q Consensus 80 ~~--~~----------~~~v~~-------Ll~eA~~~ql~~l~~~c~ 107 (472)
.+ ++ ..|.+. |+.-++.|++.++.....
T Consensus 636 ~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 636 SPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred CCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 22 11 123333 777777788877765543
No 62
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.40 E-value=0.96 Score=43.72 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=108.7
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
.+|+.++ .+ +.+..||+.+.+....-+....-.. ++.. ++.+|+++.. .+.+-.||+.+.+++..
T Consensus 44 ~l~~~~~--~~-----~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~g~~l~~~~~~---~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 44 LLYVCAS--DS-----DTIQVIDLATGEVIGTLPSGPDPEL---FALHPNGKILYIANED---DNLVTVIDIETRKVLAE 110 (300)
T ss_pred EEEEEEC--CC-----CeEEEEECCCCcEEEeccCCCCccE---EEECCCCCEEEEEcCC---CCeEEEEECCCCeEEeE
Confidence 4777776 33 3456677776655432111111111 3333 3358884221 24788999998554443
Q ss_pred cccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC
Q 012060 258 IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE 337 (472)
Q Consensus 258 ~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~ 337 (472)
+.. ...+....+.+ ++.+++++..++ ..+..||+++++++.+.... ..++. .. ....+
T Consensus 111 ~~~-------~~~~~~~~~~~-dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~---~~~~~-~~-----~s~dg 168 (300)
T TIGR03866 111 IPV-------GVEPEGMAVSP-DGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVD---QRPRF-AE-----FTADG 168 (300)
T ss_pred eeC-------CCCcceEEECC-CCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcC---CCccE-EE-----ECCCC
Confidence 321 01122233333 555555544222 24667899988754443222 11221 11 24445
Q ss_pred CeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEec--CCeEEEeeccccccc
Q 012060 338 LTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGR--GGSLEVWSRVREGRN 413 (472)
Q Consensus 338 ~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~--g~~~~v~~~~~~~~~ 413 (472)
..||+.+..++....-|+++-+. -..+....+...... ....+++. -+..+|++. .+.|.+|+.-..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~----~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--- 239 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEA----VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--- 239 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCccee--eeeeeeccccccccc----CCccceEECCCCCEEEEEcCCCCeEEEEECCCC---
Confidence 56666555565544334443220 011111000000000 01122332 234567763 367999975321
Q ss_pred cccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCC
Q 012060 414 RSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 414 ~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~ 465 (472)
++ ++.. ..++.|..+++ .|.+|+++=.+..-|-||+....
T Consensus 240 -----~~-~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 240 -----EV-LDYL------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred -----cE-EEEE------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 11 2211 11334666665 89999997555667999997653
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.99 E-value=0.86 Score=43.21 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=74.9
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccc--ccee---EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAV--GKLT---WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~--m~~~---~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
.+|.++|+.+. + ..|+.-.. -.-. -...++.+|+.. ..+.+.+||+.+++++|+...+
T Consensus 3 g~l~~~d~~tG-------~---~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~ 65 (238)
T PF13360_consen 3 GTLSALDPRTG-------K---ELWSYDLGPGIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLP 65 (238)
T ss_dssp SEEEEEETTTT-------E---EEEEEECSSSCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECS
T ss_pred CEEEEEECCCC-------C---EEEEEECCCCCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeecc
Confidence 46788999883 3 44776321 1111 223688898873 2458999999999999999976
Q ss_pred CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcE-EeecCCCCcccCCCCCCCcCeEEEEECCEEE
Q 012060 317 GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWV-YMEDKNPSMISSSGNNNGENKLIHCYKNQVF 395 (472)
Q Consensus 317 ~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~-~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~ 395 (472)
. +.... ....++.||+... ++.+...|+++- .-.|. ..... +.. ... .....++.++++|
T Consensus 66 ~-----~~~~~-----~~~~~~~v~v~~~-~~~l~~~d~~tG-~~~W~~~~~~~-~~~-~~~-----~~~~~~~~~~~~~ 126 (238)
T PF13360_consen 66 G-----PISGA-----PVVDGGRVYVGTS-DGSLYALDAKTG-KVLWSIYLTSS-PPA-GVR-----SSSSPAVDGDRLY 126 (238)
T ss_dssp S-----CGGSG-----EEEETTEEEEEET-TSEEEEEETTTS-CEEEEEEE-SS-CTC-STB-------SEEEEETTEEE
T ss_pred c-----cccce-----eeecccccccccc-eeeeEecccCCc-ceeeeeccccc-ccc-ccc-----cccCceEecCEEE
Confidence 2 11111 2666888887763 223333232222 33587 34321 110 111 3455666788888
Q ss_pred Eec-CCeEEEeec
Q 012060 396 VGR-GGSLEVWSR 407 (472)
Q Consensus 396 ~~~-g~~~~v~~~ 407 (472)
+.. ++.|-.++.
T Consensus 127 ~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 127 VGTSSGKLVALDP 139 (238)
T ss_dssp EEETCSEEEEEET
T ss_pred EEeccCcEEEEec
Confidence 887 677776664
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.95 E-value=0.58 Score=45.30 Aligned_cols=210 Identities=17% Similarity=0.121 Sum_probs=110.0
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.||.+-- .. ..+.++||.+.+-....-.. -. +++.. ++.||+... ..+-.+|+.+.+
T Consensus 11 ~g~l~~~D~--~~-----~~i~~~~~~~~~~~~~~~~~----~~-G~~~~~~~g~l~v~~~-----~~~~~~d~~~g~-- 71 (246)
T PF08450_consen 11 DGRLYWVDI--PG-----GRIYRVDPDTGEVEVIDLPG----PN-GMAFDRPDGRLYVADS-----GGIAVVDPDTGK-- 71 (246)
T ss_dssp TTEEEEEET--TT-----TEEEEEETTTTEEEEEESSS----EE-EEEEECTTSEEEEEET-----TCEEEEETTTTE--
T ss_pred CCEEEEEEc--CC-----CEEEEEECCCCeEEEEecCC----Cc-eEEEEccCCEEEEEEc-----CceEEEecCCCc--
Confidence 578888864 22 35677888887754322221 22 25555 788998422 234566998833
Q ss_pred cccccccCCCccccccc-----ceeE-----EecCCeEEEEEEeCCCcccc--ceEEEEcCCCCeeeeEEcCCCCCCCCc
Q 012060 256 SEIGRQSGASSKNMAVG-----KLTW-----IPATGVVLGSAIAWGAFGYS--GYVRMWDPRSGEVVWETNEPGSGRSAR 323 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m-----~~~~-----~~~~g~Lyv~Gg~~g~~~~~--~sve~yDp~~~~~vW~~~~~~~~~~~R 323 (472)
++.+... +..+ ..-+|.||++-......... +.|-++||. ++ .+..... +..+
T Consensus 72 ----------~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~-~~~p- 136 (246)
T PF08450_consen 72 ----------VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADG-LGFP- 136 (246)
T ss_dssp ----------EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEE-ESSE-
T ss_pred ----------EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecC-cccc-
Confidence 4444332 1111 12578899976533322122 689999999 65 3333221 1111
Q ss_pred ccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcE---EeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEe--
Q 012060 324 FGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWV---YMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVG-- 397 (472)
Q Consensus 324 ~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~---~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~-- 397 (472)
.|.+ ..-.+..||+.-...+.....|+.. ++.++. .+.+ +.... | .--++++- +|.||++
T Consensus 137 NGi~-----~s~dg~~lyv~ds~~~~i~~~~~~~-~~~~~~~~~~~~~----~~~~~-g---~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 137 NGIA-----FSPDGKTLYVADSFNGRIWRFDLDA-DGGELSNRRVFID----FPGGP-G---YPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEE-----EETTSSEEEEEETTTTEEEEEEEET-TTCCEEEEEEEEE-----SSSS-C---EEEEEEEBTTS-EEEEEE
T ss_pred cceE-----ECCcchheeecccccceeEEEeccc-cccceeeeeeEEE----cCCCC-c---CCCcceEcCCCCEEEEEc
Confidence 1343 3666778888655444332222221 011122 1222 11111 0 23456653 6899999
Q ss_pred cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEe
Q 012060 398 RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVS 450 (472)
Q Consensus 398 ~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~ 450 (472)
+++.|.++++--. +.+. .+-. ...+++++||| ++||||
T Consensus 203 ~~~~I~~~~p~G~---------~~~~-----i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 203 GGGRIVVFDPDGK---------LLRE-----IELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TTTEEEEEETTSC---------EEEE-----EE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEECCCcc---------EEEE-----EcCC-CCCEEEEEEECCCCCEEEEE
Confidence 8899999997411 1121 2223 23799999986 569998
No 65
>PF13854 Kelch_5: Kelch motif
Probab=95.83 E-value=0.017 Score=40.87 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=30.7
Q ss_pred CCCccccccccceeeeeCCeEEEEcCcCCC--CceecceeeeecCCCC
Q 012060 161 SVTVRTHLDNITSIRHVWSDVAAVGSDYSS--GIHFYDLSSSRHVASA 206 (472)
Q Consensus 161 m~~~R~~~~~v~~v~~l~~~lYavGG~~~~--g~~~l~sve~ydp~t~ 206 (472)
+|.+|..|++ +++++.||+.|| .. ....++.+..||..++
T Consensus 1 ~P~~R~~hs~----~~~~~~iyi~GG--~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSA----VVVGNNIYIFGG--YSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEE----EEECCEEEEEcC--ccCCCCCEECcEEEEECCCC
Confidence 3678999854 458999999999 55 3567888888887653
No 66
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.79 E-value=2 Score=41.49 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=104.4
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCC-CcCcccceeEEEEe-CC-eEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD-PRIYRATVTAIADS-PT-TVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~-m~~~R~~~~ava~l-~g-~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
.+|+.++ .++ .+..||+.+.+-...-. ....+ +++.. ++ .+|+ +.. .+.+-.||+.+.+..
T Consensus 2 ~~~~s~~--~d~-----~v~~~d~~t~~~~~~~~~~~~~~----~l~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNE--KDN-----TISVIDTATLEVTRTFPVGQRPR----GITLSKDGKLLYVCASD----SDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEec--CCC-----EEEEEECCCCceEEEEECCCCCC----ceEECCCCCEEEEEECC----CCeEEEEECCCCcEE
Confidence 4666666 343 55666766554222111 11122 13333 33 5888 432 357889999985533
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
.++... ..+....+.+-++.||+++.. .+.+..||+++.+.+.+.... ... .+ ++...
T Consensus 67 ~~~~~~-------~~~~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~~~~---~~~---~~---~~~~~ 124 (300)
T TIGR03866 67 GTLPSG-------PDPELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEIPVG---VEP---EG---MAVSP 124 (300)
T ss_pred EeccCC-------CCccEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEeeCC---CCc---ce---EEECC
Confidence 322210 012223344456678776542 347999999998865544322 111 11 12233
Q ss_pred cCCeEEEEcccCCCcc-cccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeecccccc
Q 012060 336 DELTLFKICSKSGDIA-MADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGR 412 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~-~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~ 412 (472)
++.+++++..++... ..|++ ....+.. +..... .......--+.+||++. ++.|.+|+-...+
T Consensus 125 -dg~~l~~~~~~~~~~~~~d~~-----~~~~~~~----~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~- 190 (300)
T TIGR03866 125 -DGKIVVNTSETTNMAHFIDTK-----TYEIVDN----VLVDQR---PRFAEFTADGKELWVSSEIGGTVSVIDVATRK- 190 (300)
T ss_pred -CCCEEEEEecCCCeEEEEeCC-----CCeEEEE----EEcCCC---ccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-
Confidence 666676776543211 11221 1222221 101100 01111111233566653 6889999774221
Q ss_pred ccccCCcceee-ccccccccCCCCceE--EEeecCceEEEeeeccceeEEeecC
Q 012060 413 NRSCSEGLFRR-NFVDRVEDSGRGAIS--RIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 413 ~~~~~~~~~r~-~~~~~~~~~~~~~i~--~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
..++ .+-........-..+ .++--|.++|++-.+.+.+.||+..
T Consensus 191 -------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 191 -------VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred -------eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 1011 010000001111122 2455688888876666778888753
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.74 E-value=0.1 Score=54.98 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=95.5
Q ss_pred EEE-eCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeE-EecCCeEEEEEEeCCCccccceEE
Q 012060 224 IAD-SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW-IPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 224 va~-l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~-~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+.+ .||.|+| |...| -|-+||.++-..+..+.. .-+|.+... .+.++.+++.|+.+ ..+.
T Consensus 74 ~~fR~DG~LlaaGD~sG----~V~vfD~k~r~iLR~~~a-------h~apv~~~~f~~~d~t~l~s~sDd------~v~k 136 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESG----HVKVFDMKSRVILRQLYA-------HQAPVHVTKFSPQDNTMLVSGSDD------KVVK 136 (487)
T ss_pred EEeecCCeEEEccCCcC----cEEEeccccHHHHHHHhh-------ccCceeEEEecccCCeEEEecCCC------ceEE
Confidence 444 4788999 64433 478999555222222222 224444443 45888999987743 3588
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
.||..+..+.-+.... -.--|+++. ...+++|++-|||||....=|.|+.. +|+ .+ ++..-.
T Consensus 137 ~~d~s~a~v~~~l~~h--tDYVR~g~~------~~~~~hivvtGsYDg~vrl~DtR~~~--~~v--~e----lnhg~p-- 198 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGH--TDYVRCGDI------SPANDHIVVTGSYDGKVRLWDTRSLT--SRV--VE----LNHGCP-- 198 (487)
T ss_pred EEEcCCcEEEEEecCC--cceeEeecc------ccCCCeEEEecCCCceEEEEEeccCC--cee--EE----ecCCCc--
Confidence 8999888854455544 577788886 55699999999999886655667643 343 33 332222
Q ss_pred CCcCeEEEEECCEEEEe-cCCeEEEeecc
Q 012060 381 NGENKLIHCYKNQVFVG-RGGSLEVWSRV 408 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~-~g~~~~v~~~~ 408 (472)
....++.-.|+++++ +|-+|-||.=.
T Consensus 199 --Ve~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 199 --VESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred --eeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 567777777788877 55689999764
No 68
>PLN02772 guanylate kinase
Probab=95.65 E-value=0.072 Score=55.86 Aligned_cols=81 Identities=7% Similarity=0.082 Sum_probs=55.0
Q ss_pred ccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcccceeEEEEe-CCeEEE-EecCC
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYRATVTAIADS-PTTVFS-SLVCP 238 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R~~~~ava~l-~g~IYA-Gg~~~ 238 (472)
++..+.+ ..++.++|++||. .+.....+.+.+||+.+++|...+ ..+.+|.+++ ++++ ++.|++ ++ ++
T Consensus 24 ~~~~~ta----v~igdk~yv~GG~-~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhS-a~v~~~~rilv~~~-~~ 96 (398)
T PLN02772 24 PKNRETS----VTIGDKTYVIGGN-HEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYS-AVVLNKDRILVIKK-GS 96 (398)
T ss_pred CCCccee----EEECCEEEEEccc-CCCccccceEEEEECCCCcEecccccCCCCCCCCcce-EEEECCceEEEEeC-CC
Confidence 4555533 3489999999994 233236789999999999999865 5677899997 5655 678988 32 12
Q ss_pred CCCceeEEEeCCC
Q 012060 239 HKENSVLLIDKST 251 (472)
Q Consensus 239 ~~l~sVE~YDp~t 251 (472)
..-.++.---..|
T Consensus 97 ~~~~~~w~l~~~t 109 (398)
T PLN02772 97 APDDSIWFLEVDT 109 (398)
T ss_pred CCccceEEEEcCC
Confidence 2234555444444
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.13 E-value=2.6 Score=48.36 Aligned_cols=235 Identities=13% Similarity=0.056 Sum_probs=114.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
+...+.|+ ++| ++..||..+.+- +.........+.+++.. ++.+++ |+.+ .+|-.||..+.+.+
T Consensus 545 ~~~las~~--~Dg-----~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D----g~v~iWd~~~~~~~ 611 (793)
T PLN00181 545 KSQVASSN--FEG-----VVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD----GSVKLWSINQGVSI 611 (793)
T ss_pred CCEEEEEe--CCC-----eEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC----CEEEEEECCCCcEE
Confidence 45566666 555 455667655432 22222222223235553 455666 6544 46889999884433
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee-eeEEcCCCCCCCCcccccccceeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV-VWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~-vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
..+.. ........+..-++.++++|+.+ ++|..||.++.+. .-+.... ...+.+ +.
T Consensus 612 ~~~~~-------~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h--------~~~V~~--v~ 668 (793)
T PLN00181 612 GTIKT-------KANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGH--------SKTVSY--VR 668 (793)
T ss_pred EEEec-------CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCC--------CCCEEE--EE
Confidence 22211 00112233434567788877643 4799999988652 1222222 111211 22
Q ss_pred ecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccc
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREG 411 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~ 411 (472)
..++..++.|+.|+.+..-|++.-. ...|..+.. ...... ...+......++++++++ +.|-+|......
T Consensus 669 f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~----~~gh~~---~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 669 FVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS----FMGHTN---VKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EeCCCEEEEEECCCEEEEEeCCCCccccCCcceEE----EcCCCC---CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 3356677788888765544554322 223444432 111110 011111233456666654 899999853210
Q ss_pred cccccCCcceeec----cccccccCCCCceEEEeecCc-eEEEeeeccceeEEee
Q 012060 412 RNRSCSEGLFRRN----FVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWE 461 (472)
Q Consensus 412 ~~~~~~~~~~r~~----~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 461 (472)
.+ ..++.+ ..+...+.....|.++.+-++ .++++=.+..-|.|||
T Consensus 742 ---~~--~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 742 ---PV--LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ---ce--EEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 00 000100 001111233456888876433 4555656667799997
No 70
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.98 E-value=4.6 Score=40.73 Aligned_cols=209 Identities=11% Similarity=0.107 Sum_probs=102.6
Q ss_pred EEEe--CCeEEEEecCCCCCceeEEEeCCCccccc-ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 224 IADS--PTTVFSSLVCPHKENSVLLIDKSTLQISS-EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 224 va~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~-~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
++.. +..||++.+. .++|-+||..++..+. .+.. ......|......+-...||++.. ..+.|.
T Consensus 85 i~~~~~g~~l~v~~~~---~~~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~ 151 (330)
T PRK11028 85 ISTDHQGRFLFSASYN---ANCVSVSPLDKDGIPVAPIQI----IEGLEGCHSANIDPDNRTLWVPCL------KEDRIR 151 (330)
T ss_pred EEECCCCCEEEEEEcC---CCeEEEEEECCCCCCCCceee----ccCCCcccEeEeCCCCCEEEEeeC------CCCEEE
Confidence 5555 3359985433 3577788886532110 0000 000011222223344567888643 245899
Q ss_pred EEcCCCCeeeeE------Ec-CCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEe---ecCC
Q 012060 301 MWDPRSGEVVWE------TN-EPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYM---EDKN 370 (472)
Q Consensus 301 ~yDp~~~~~vW~------~~-~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~---~~~~ 370 (472)
.||..++.. -. .. ++ ...+| .++..-.+..+|++...++.+..-|++.- +++.+.+ ...+
T Consensus 152 v~d~~~~g~-l~~~~~~~~~~~~--g~~p~------~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p 221 (330)
T PRK11028 152 LFTLSDDGH-LVAQEPAEVTTVE--GAGPR------HMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMP 221 (330)
T ss_pred EEEECCCCc-ccccCCCceecCC--CCCCc------eEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCC
Confidence 999877431 11 11 12 12233 23346667789998776665544344311 2233333 2211
Q ss_pred CCcccCCCCCCCcCeEEEE--ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCce
Q 012060 371 PSMISSSGNNNGENKLIHC--YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNR 446 (472)
Q Consensus 371 ~~m~~~~~~~~~~~~~~~~--~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r 446 (472)
..+..++ ....++. -+.+||++. .+.|-||.--.. ....++ +++.+.-....--.+.--|.+
T Consensus 222 ~~~~~~~-----~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~----~~~~~~-----~~~~~~~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 222 ADFSDTR-----WAADIHITPDGRHLYACDRTASLISVFSVSED----GSVLSF-----EGHQPTETQPRGFNIDHSGKY 287 (330)
T ss_pred CcCCCCc-----cceeEEECCCCCEEEEecCCCCeEEEEEEeCC----CCeEEE-----eEEEeccccCCceEECCCCCE
Confidence 1112222 1223332 234799983 378999865211 001111 112111111111246667999
Q ss_pred EEEeeeccceeEEeecCCCCcce
Q 012060 447 LFVSREDVEGIEVWESSNLSGVV 469 (472)
Q Consensus 447 ~f~~~~~~~~~~vw~~~~~~~~~ 469 (472)
|||+-...+.|.||+-....|.+
T Consensus 288 l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 288 LIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEEEEccCCcEEEEEEcCCCCcE
Confidence 99998878899999876555544
No 71
>PTZ00421 coronin; Provisional
Probab=94.87 E-value=3.7 Score=44.63 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=66.1
Q ss_pred cccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCc-----cccCCCCcCcccceeEEEEeC--CeEEE-Eec
Q 012060 167 HLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAH-----WTDPSDPRIYRATVTAIADSP--TTVFS-SLV 236 (472)
Q Consensus 167 ~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~-----W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~ 236 (472)
+-+.+.++++- ++.+++.|+ .+| ++..||..+.. ...+..+......+.+++... +.+.| |+.
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS--~Dg-----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTAS--EDG-----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEe--CCC-----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 33445455543 456777777 455 34445543321 111222222222333345442 34555 654
Q ss_pred CCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 237 CPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 237 ~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
+ .+|-.||..+.+++..+... .-.-..+.|.+ ++.++++|+. .+.|..||+++++++.+....
T Consensus 147 D----gtVrIWDl~tg~~~~~l~~h------~~~V~sla~sp-dG~lLatgs~------Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 147 D----MVVNVWDVERGKAVEVIKCH------SDQITSLEWNL-DGSLLCTTSK------DKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred C----CEEEEEECCCCeEEEEEcCC------CCceEEEEEEC-CCCEEEEecC------CCEEEEEECCCCcEEEEEecC
Confidence 4 47889999986544333210 00112344544 5666676663 347999999999977776554
No 72
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=94.78 E-value=0.019 Score=60.80 Aligned_cols=164 Identities=9% Similarity=0.007 Sum_probs=106.4
Q ss_pred CCccccccccceeeeeC--CeEEEEcCcCCCCceecceeeeecCCCCccccCCC---CcCcccceeEEEEe--CCeEEE-
Q 012060 162 VTVRTHLDNITSIRHVW--SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD---PRIYRATVTAIADS--PTTVFS- 233 (472)
Q Consensus 162 ~~~R~~~~~v~~v~~l~--~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~---m~~~R~~~~ava~l--~g~IYA- 233 (472)
+..|.+|..+ ..+ +.||.-|| .+|...+...+.|....++|+.+.- -+-+|+.+- .+.- ..+||-
T Consensus 258 p~~RgGHQMV----~~~~~~CiYLYGG--WdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR-MVid~S~~KLYLl 330 (723)
T KOG2437|consen 258 PGMRGGHQMV----IDVQTECVYLYGG--WDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR-MVIDISRRKLYLL 330 (723)
T ss_pred ccccCcceEE----EeCCCcEEEEecC--cccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh-hhhhhhHhHHhhh
Confidence 4457777543 344 49999999 9999999999999999999998642 445566553 3322 237998
Q ss_pred EecCC-CC------CceeEEEeCCCcccccccccccCCCcccccccce-----------e--EEecCCeEEEEEEeCCCc
Q 012060 234 SLVCP-HK------ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL-----------T--WIPATGVVLGSAIAWGAF 293 (472)
Q Consensus 234 Gg~~~-~~------l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-----------~--~~~~~g~Lyv~Gg~~g~~ 293 (472)
|-+-+ ++ -+-+.+||..| +.|....--.. + ...-.+.|||.||..-.-
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~------------~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~ 398 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDT------------NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTC 398 (723)
T ss_pred hhccccccccccccccceEEEecCC------------ceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccC
Confidence 75433 11 34678899888 44876532111 1 112556799999853321
Q ss_pred c--ccceEEEEcCCCCeeeeEEcCCCC--------CCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 294 G--YSGYVRMWDPRSGEVVWETNEPGS--------GRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 294 ~--~~~sve~yDp~~~~~vW~~~~~~~--------~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
. ..+-+..||-.... |+..+.-. -...|-|||+ .....+.++|+.||+...
T Consensus 399 ~e~~f~GLYaf~~~~~~--w~~l~e~~~~~~~vvE~~~sR~ghcm---E~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 399 NEPQFSGLYAFNCQCQT--WKLLREDSCNAGPVVEDIQSRIGHCM---EFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred CCccccceEEEecCCcc--HHHHHHHHhhcCcchhHHHHHHHHHH---HhcCCCCeEEeccCcccc
Confidence 1 23456677766655 87664310 1456788885 556789999999996643
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.77 E-value=3.4 Score=38.24 Aligned_cols=185 Identities=16% Similarity=0.268 Sum_probs=89.8
Q ss_pred EEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
+.... +.+++ ++. ...+-.||+.+.++...+... ........+.+. +.++++|.. .+.|..
T Consensus 99 ~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~------~~~i~i 161 (289)
T cd00200 99 VAFSPDGRILSSSSR----DKTIKVWDVETGKCLTTLRGH------TDWVNSVAFSPD-GTFVASSSQ------DGTIKL 161 (289)
T ss_pred EEEcCCCCEEEEecC----CCeEEEEECCCcEEEEEeccC------CCcEEEEEEcCc-CCEEEEEcC------CCcEEE
Confidence 44444 34555 432 346889999875533333210 001122233333 455554432 346999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNN 381 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~ 381 (472)
||.++++.+...... ...+..++... ++..+++|+.++....-|++. ...+.. ......
T Consensus 162 ~d~~~~~~~~~~~~~--------~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~-----~~~~~~----~~~~~~--- 220 (289)
T cd00200 162 WDLRTGKCVATLTGH--------TGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST-----GKCLGT----LRGHEN--- 220 (289)
T ss_pred EEccccccceeEecC--------ccccceEEECC-CcCEEEEecCCCcEEEEECCC-----Cceecc----hhhcCC---
Confidence 999988755555433 11121222233 343455666566544333332 222222 101110
Q ss_pred CcCeEEEEEC-CEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeecccee
Q 012060 382 GENKLIHCYK-NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGI 457 (472)
Q Consensus 382 ~~~~~~~~~~-g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~ 457 (472)
.-..++... ++++++. .+.|.+|+-... +..+. +- ...+.|..+++-.+ +++++=.+...+
T Consensus 221 -~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~--------~~~~~-~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 221 -GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--------ECVQT-LS-----GHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred -ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc--------eeEEE-cc-----ccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 122233333 5666665 689999986421 11111 11 12346888888775 555665666678
Q ss_pred EEee
Q 012060 458 EVWE 461 (472)
Q Consensus 458 ~vw~ 461 (472)
.||+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 8985
No 74
>PF13854 Kelch_5: Kelch motif
Probab=94.37 E-value=0.077 Score=37.42 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=29.2
Q ss_pred cCcccceeEEEEeCCeEEE-EecCC---CCCceeEEEeCCC
Q 012060 215 RIYRATVTAIADSPTTVFS-SLVCP---HKENSVLLIDKST 251 (472)
Q Consensus 215 ~~~R~~~~ava~l~g~IYA-Gg~~~---~~l~sVE~YDp~t 251 (472)
+.+|..++ +++.+++||+ ||..+ ...+.+-+||..+
T Consensus 2 P~~R~~hs-~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHS-AVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceE-EEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 45789986 8889999999 98873 3488999999876
No 75
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=94.16 E-value=0.043 Score=58.27 Aligned_cols=108 Identities=13% Similarity=0.132 Sum_probs=73.8
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC-CCCCcccccccceeeeecC--CeEEEEcccCCCcccc--
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS-GRSARFGDSFADVDVDVDE--LTLFKICSKSGDIAMA-- 353 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~-~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~~~~~-- 353 (472)
-+++||.=||.+|.. .+..-..|....|. |+..-... ..-+|..|.| +..- .+||..|-+-+.....
T Consensus 271 ~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~--W~~iN~~t~~PG~RsCHRM-----Vid~S~~KLYLlG~Y~~sS~r~~~ 342 (723)
T KOG2437|consen 271 QTECVYLYGGWDGTQ-DLADFWAYSVKENQ--WTCINRDTEGPGARSCHRM-----VIDISRRKLYLLGRYLDSSVRNSK 342 (723)
T ss_pred CCcEEEEecCcccch-hHHHHHhhcCCcce--eEEeecCCCCCcchhhhhh-----hhhhhHhHHhhhhhcccccccccc
Confidence 567999999999976 56678889999999 99987643 4567888886 3334 4999999766543211
Q ss_pred ccccc------CCCCcEEeecCCCCcccCCCC--CCCcCeEEEEECCE--EEEecC
Q 012060 354 DLRNL------GEDPWVYMEDKNPSMISSSGN--NNGENKLIHCYKNQ--VFVGRG 399 (472)
Q Consensus 354 dl~s~------e~d~W~~~~~~~~~m~~~~~~--~~~~~~~~~~~~g~--l~~~~g 399 (472)
++|+= .++.|++++ |.....| .++...+.++-+.+ |||.||
T Consensus 343 s~RsDfW~FDi~~~~W~~ls-----~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 343 SLRSDFWRFDIDTNTWMLLS-----EDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred ccccceEEEecCCceeEEec-----ccccccCCcceeecceeeEecCcceEEEecC
Confidence 22221 167788887 5555332 33445556666666 899888
No 76
>PTZ00420 coronin; Provisional
Probab=93.71 E-value=5.8 Score=43.93 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=40.8
Q ss_pred eEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 230 TVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 230 ~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
.|+| ++.+ .+|-.||..+.+.+..+.. . .....+.|.+ +|.++++++. .+.|..|||++++
T Consensus 139 ~iLaSgS~D----gtIrIWDl~tg~~~~~i~~---~----~~V~Slswsp-dG~lLat~s~------D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD----SFVNIWDIENEKRAFQINM---P----KKLSSLKWNI-KGNLLSGTCV------GKHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC----CeEEEEECCCCcEEEEEec---C----CcEEEEEECC-CCCEEEEEec------CCEEEEEECCCCc
Confidence 4666 5444 4788999998553333221 0 0112333443 5666676653 3479999999998
Q ss_pred eeeEEcCC
Q 012060 309 VVWETNEP 316 (472)
Q Consensus 309 ~vW~~~~~ 316 (472)
++=+....
T Consensus 201 ~i~tl~gH 208 (568)
T PTZ00420 201 IASSFHIH 208 (568)
T ss_pred EEEEEecc
Confidence 76555444
No 77
>PLN02772 guanylate kinase
Probab=93.57 E-value=0.18 Score=52.97 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=49.3
Q ss_pred EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 277 IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 277 ~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
...+.++|+.||.+......+.|.+||+.|++ |..-.- +....+|.||+. +.+.+++|+++++-+
T Consensus 31 v~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~--W~~P~V~G~~P~~r~GhSa----~v~~~~rilv~~~~~ 96 (398)
T PLN02772 31 VTIGDKTYVIGGNHEGNTLSIGVQILDKITNN--WVSPIVLGTGPKPCKGYSA----VVLNKDRILVIKKGS 96 (398)
T ss_pred EEECCEEEEEcccCCCccccceEEEEECCCCc--EecccccCCCCCCCCcceE----EEECCceEEEEeCCC
Confidence 34789999988754432145799999999999 877654 555789999995 445589999999744
No 78
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.48 E-value=0.19 Score=49.50 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=81.3
Q ss_pred EEeCCCcccccccccccCCCcccccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCC----CeeeeEEcCC
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRS----GEVVWETNEP 316 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~----~~~vW~~~~~ 316 (472)
.|||.|++ ++.+....-.++. -+|.|...||+... ...++.|+|-+ .. |.....
T Consensus 50 ~yD~~tn~------------~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~--w~e~~~ 112 (243)
T PF07250_consen 50 EYDPNTNT------------FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCD--WTESPN 112 (243)
T ss_pred EEecCCCc------------EEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCC--ceECcc
Confidence 69999944 5554443333332 68888898887442 35799999986 34 877765
Q ss_pred CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEE
Q 012060 317 GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQV 394 (472)
Q Consensus 317 ~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l 394 (472)
. |..+|..... ...-+|++++|||....... -+-... ......+.-+.. .......--++-+++ =+|+|
T Consensus 113 ~-m~~~RWYpT~----~~L~DG~vlIvGG~~~~t~E-~~P~~~~~~~~~~~~~l~~---~~~~~~~nlYP~~~llPdG~l 183 (243)
T PF07250_consen 113 D-MQSGRWYPTA----TTLPDGRVLIVGGSNNPTYE-FWPPKGPGPGPVTLPFLSQ---TSDTLPNNLYPFVHLLPDGNL 183 (243)
T ss_pred c-ccCCCccccc----eECCCCCEEEEeCcCCCccc-ccCCccCCCCceeeecchh---hhccCccccCceEEEcCCCCE
Confidence 3 7999999986 66678999999997632110 000000 111112211000 000111225777764 47899
Q ss_pred EEecCCeEEEeecc
Q 012060 395 FVGRGGSLEVWSRV 408 (472)
Q Consensus 395 ~~~~g~~~~v~~~~ 408 (472)
|+..+..-.+|+..
T Consensus 184 Fi~an~~s~i~d~~ 197 (243)
T PF07250_consen 184 FIFANRGSIIYDYK 197 (243)
T ss_pred EEEEcCCcEEEeCC
Confidence 99988777777654
No 79
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.47 E-value=7 Score=36.90 Aligned_cols=188 Identities=19% Similarity=0.225 Sum_probs=98.9
Q ss_pred eCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccc--ceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 227 SPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG--KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 227 l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m--~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
.++.||++.. ...+-+||+.| |+ -.|+.-.+- ...-...++.||+... .+.+.++|.
T Consensus 35 ~~~~v~~~~~----~~~l~~~d~~t-------G~---~~W~~~~~~~~~~~~~~~~~~v~v~~~-------~~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASG----DGNLYALDAKT-------GK---VLWRFDLPGPISGAPVVDGGRVYVGTS-------DGSLYALDA 93 (238)
T ss_dssp ETTEEEEEET----TSEEEEEETTT-------SE---EEEEEECSSCGGSGEEEETTEEEEEET-------TSEEEEEET
T ss_pred eCCEEEEEcC----CCEEEEEECCC-------CC---EEEEeeccccccceeeecccccccccc-------eeeeEeccc
Confidence 7888999521 34678999999 44 347665431 1222557899988752 238999999
Q ss_pred CCCeeeeEE-cCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC-CCCCCC
Q 012060 305 RSGEVVWET-NEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS-SGNNNG 382 (472)
Q Consensus 305 ~~~~~vW~~-~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~-~~~~~~ 382 (472)
+++++.|+. .... ...+ .....+..+.++.+|+.+. ++.+...|+++ +.-.|.+-...++....- .. ..
T Consensus 94 ~tG~~~W~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~--~~ 164 (238)
T PF13360_consen 94 KTGKVLWSIYLTSS--PPAG---VRSSSSPAVDGDRLYVGTS-SGKLVALDPKT-GKLLWKYPVGEPRGSSPISSF--SD 164 (238)
T ss_dssp TTSCEEEEEEE-SS--CTCS---TB--SEEEEETTEEEEEET-CSEEEEEETTT-TEEEEEEESSTT-SS--EEEE--TT
T ss_pred CCcceeeeeccccc--cccc---cccccCceEecCEEEEEec-cCcEEEEecCC-CcEEEEeecCCCCCCcceeee--cc
Confidence 999999994 4331 1111 1111223555777765543 44444333332 123466643321110000 00 00
Q ss_pred cCeEEEEECCEEEEecCCe--EEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEe
Q 012060 383 ENKLIHCYKNQVFVGRGGS--LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVW 460 (472)
Q Consensus 383 ~~~~~~~~~g~l~~~~g~~--~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw 460 (472)
....+...++.||++.+.. +.+ +- .. .+.+.+++ ..+.......=|+.||+.. ....+-.|
T Consensus 165 ~~~~~~~~~~~v~~~~~~g~~~~~-d~-~t------g~~~w~~~--------~~~~~~~~~~~~~~l~~~~-~~~~l~~~ 227 (238)
T PF13360_consen 165 INGSPVISDGRVYVSSGDGRVVAV-DL-AT------GEKLWSKP--------ISGIYSLPSVDGGTLYVTS-SDGRLYAL 227 (238)
T ss_dssp EEEEEECCTTEEEEECCTSSEEEE-ET-TT------TEEEEEEC--------SS-ECECEECCCTEEEEEE-TTTEEEEE
T ss_pred cccceEEECCEEEEEcCCCeEEEE-EC-CC------CCEEEEec--------CCCccCCceeeCCEEEEEe-CCCEEEEE
Confidence 1344555678999998755 333 11 11 12223331 2223333677789999888 44556566
Q ss_pred e
Q 012060 461 E 461 (472)
Q Consensus 461 ~ 461 (472)
+
T Consensus 228 d 228 (238)
T PF13360_consen 228 D 228 (238)
T ss_dssp E
T ss_pred E
Confidence 5
No 80
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.92 E-value=6 Score=45.44 Aligned_cols=149 Identities=14% Similarity=0.203 Sum_probs=83.0
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
+.|.+..+.+.++|+. .++|.+||..+++.+.+.... ...+-+++....++.+++.|+.++....-
T Consensus 538 l~~~~~~~~~las~~~------Dg~v~lWd~~~~~~~~~~~~H--------~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 538 ICWNSYIKSQVASSNF------EGVVQVWDVARSQLVTEMKEH--------EKRVWSIDYSSADPTLLASGSDDGSVKLW 603 (793)
T ss_pred EEeccCCCCEEEEEeC------CCeEEEEECCCCeEEEEecCC--------CCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence 4455555556666664 347999999999877666543 12222222333467888899988765543
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEecC--CeEEEeeccccccccccCCcceeecccccc
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRV 429 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~ 429 (472)
|++. ...+.. +.... .-..+.. .+|.++++++ +.|.+|+--.. ...+ ..+.+
T Consensus 604 d~~~-----~~~~~~----~~~~~-----~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~------~~~~--~~~~~-- 659 (793)
T PLN00181 604 SINQ-----GVSIGT----IKTKA-----NICCVQFPSESGRSLAFGSADHKVYYYDLRNP------KLPL--CTMIG-- 659 (793)
T ss_pred ECCC-----CcEEEE----EecCC-----CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------Cccc--eEecC--
Confidence 4432 223322 11111 1112222 2466666654 78999985311 0001 11112
Q ss_pred ccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 430 EDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 430 ~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
..+.|+.+.|--+..+++=.....|-+|+..
T Consensus 660 ---h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 660 ---HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ---CCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 3456888888655667777777779999865
No 81
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.73 E-value=1.2 Score=43.97 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=70.4
Q ss_pred eeCCeEEEEcCcCCCCceecceeeeecCC----CCccccCC-CCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeC
Q 012060 176 HVWSDVAAVGSDYSSGIHFYDLSSSRHVA----SAHWTDPS-DPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDK 249 (472)
Q Consensus 176 ~l~~~lYavGG~~~~g~~~l~sve~ydp~----t~~W~~~a-~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp 249 (472)
.-||.+..+||. .+|.. .+-.|+|. +..|.... .|..+|-+..+..--||.+++ ||.. ..+.|.|++
T Consensus 75 L~dG~ll~tGG~-~~G~~---~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~---~~t~E~~P~ 147 (243)
T PF07250_consen 75 LPDGRLLQTGGD-NDGNK---AIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN---NPTYEFWPP 147 (243)
T ss_pred CCCCCEEEeCCC-Ccccc---ceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC---CCcccccCC
Confidence 358999999994 34443 33345554 36798765 699999998734444678888 8765 456787766
Q ss_pred CCcccccccccccCCCcccccccc---------eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC
Q 012060 250 STLQISSEIGRQSGASSKNMAVGK---------LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG 317 (472)
Q Consensus 250 ~t~~~~~~~~~~~~~~W~~v~~m~---------~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~ 317 (472)
.... ...-.|...+... .-++.-+|.||+.+. ..-..||+.++++ ....+.+
T Consensus 148 ~~~~-------~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--------~~s~i~d~~~n~v-~~~lP~l 208 (243)
T PF07250_consen 148 KGPG-------PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--------RGSIIYDYKTNTV-VRTLPDL 208 (243)
T ss_pred ccCC-------CCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--------CCcEEEeCCCCeE-EeeCCCC
Confidence 4411 0001122222111 113336788888654 3567899999982 2444454
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.47 E-value=3 Score=44.35 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=81.7
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc--CcccceeEEEEeCC-eEEE--
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR--IYRATVTAIADSPT-TVFS-- 233 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~--~~R~~~~ava~l~g-~IYA-- 233 (472)
.+....|+.- +.-.++.+.+.|| |+| ++-.||.++.+ ..+..++ .|-.. +.++.+ .+.|
T Consensus 151 ~htDYVR~g~-----~~~~~~hivvtGs--YDg-----~vrl~DtR~~~-~~v~elnhg~pVe~---vl~lpsgs~iasA 214 (487)
T KOG0310|consen 151 GHTDYVRCGD-----ISPANDHIVVTGS--YDG-----KVRLWDTRSLT-SRVVELNHGCPVES---VLALPSGSLIASA 214 (487)
T ss_pred CCcceeEeec-----cccCCCeEEEecC--CCc-----eEEEEEeccCC-ceeEEecCCCceee---EEEcCCCCEEEEc
Confidence 4555566652 2235778999999 888 56678877773 2223322 12122 444443 6666
Q ss_pred EecCCCCCceeEEEeCCCccccccccccc----CCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 234 SLVCPHKENSVLLIDKSTLQISSEIGRQS----GASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 234 Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~----~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
| -|+|-+||..+ |.|- .|.-+.+..|.+. .-.-.|+. |+ ..+.|..||..+=++
T Consensus 215 g------Gn~vkVWDl~~-------G~qll~~~~~H~KtVTcL~l~--s~~~rLlS-~s------LD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 215 G------GNSVKVWDLTT-------GGQLLTSMFNHNKTVTCLRLA--SDSTRLLS-GS------LDRHVKVFDTTNYKV 272 (487)
T ss_pred C------CCeEEEEEecC-------CceehhhhhcccceEEEEEee--cCCceEee-cc------cccceEEEEccceEE
Confidence 3 36899999997 4433 1233444443222 22345544 34 245799999555566
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
|-+|.=| -++.|++++. ++.--++|..+|-+.
T Consensus 273 v~s~~~~---------~pvLsiavs~-dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 273 VHSWKYP---------GPVLSIAVSP-DDQTVVIGMSNGLVS 304 (487)
T ss_pred EEeeecc---------cceeeEEecC-CCceEEEecccceee
Confidence 6333333 2245667777 445555898887654
No 83
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.88 E-value=17 Score=37.33 Aligned_cols=260 Identities=14% Similarity=0.118 Sum_probs=128.5
Q ss_pred eCCeEEEEcCcCCCCceecceeeee--cCCCCccccCCCCcCcccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSR--HVASAHWTDPSDPRIYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~y--dp~t~~W~~~a~m~~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
-++.||++.. .. ..-..+..| ++.+.+.+.+............++. -+.+||+..+. ..+|.+|+...+
T Consensus 47 ~~~~LY~~~e--~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~---~g~v~v~~l~~~ 119 (345)
T PF10282_consen 47 DGRRLYVVNE--GS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG---GGSVSVFPLDDD 119 (345)
T ss_dssp TSSEEEEEET--TS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT---TTEEEEEEECTT
T ss_pred CCCEEEEEEc--cc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc---CCeEEEEEccCC
Confidence 3567888865 21 011233444 4443455555443321222111444 34568885444 346778887763
Q ss_pred cccccc-cc--ccC---CCcccccccc--eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe--e---eeEEcCCCCC
Q 012060 253 QISSEI-GR--QSG---ASSKNMAVGK--LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE--V---VWETNEPGSG 319 (472)
Q Consensus 253 ~~~~~~-~~--~~~---~~W~~v~~m~--~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~--~---vW~~~~~~~~ 319 (472)
-.+.+. .. ..+ +.-....+-. ....+-++.+||.-- | .+.|..|+...+. . ..-..++ .
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--G----~D~v~~~~~~~~~~~l~~~~~~~~~~--G 191 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--G----ADRVYVYDIDDDTGKLTPVDSIKVPP--G 191 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET--T----TTEEEEEEE-TTS-TEEEEEEEECST--T
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec--C----CCEEEEEEEeCCCceEEEeecccccc--C
Confidence 211111 00 000 0000001111 112235567888632 3 2467777766554 1 1222333 2
Q ss_pred CCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEe
Q 012060 320 RSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVG 397 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~ 397 (472)
.-+|-.. ....+..+|+++-.++.+...++.. ++..++.+..... +...-. .+.....|++. +..||++
T Consensus 192 ~GPRh~~------f~pdg~~~Yv~~e~s~~v~v~~~~~-~~g~~~~~~~~~~-~~~~~~-~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 192 SGPRHLA------FSPDGKYAYVVNELSNTVSVFDYDP-SDGSLTEIQTIST-LPEGFT-GENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp SSEEEEE------E-TTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEES-CETTSC-SSSSEEEEEE-TTSSEEEEE
T ss_pred CCCcEEE------EcCCcCEEEEecCCCCcEEEEeecc-cCCceeEEEEeee-cccccc-ccCCceeEEEecCCCEEEEE
Confidence 4455433 3666789999998776655433331 1333433321000 111111 11246677777 6689998
Q ss_pred c-C-CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCCCcceE
Q 012060 398 R-G-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNLSGVVC 470 (472)
Q Consensus 398 ~-g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~~~~~~ 470 (472)
- + ++|-+|.--.. +.++-+ ++..+ .+|..-.+|++ -|++|+|+-.+.+.|.|++-..-.|.+.
T Consensus 263 nr~~~sI~vf~~d~~------~g~l~~---~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 263 NRGSNSISVFDLDPA------TGTLTL---VQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ECTTTEEEEEEECTT------TTTEEE---EEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred eccCCEEEEEEEecC------CCceEE---EEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 3 3 78988876321 122211 22211 23334778888 9999999999999999998766666654
No 84
>PTZ00421 coronin; Provisional
Probab=91.82 E-value=22 Score=38.67 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=78.8
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
+.|.+..+.++++|+.+ ++|.+||.++++.+=+.... ...+.+++... ++.+++.|+.|+.+..-
T Consensus 131 l~f~P~~~~iLaSgs~D------gtVrIWDl~tg~~~~~l~~h--------~~~V~sla~sp-dG~lLatgs~Dg~IrIw 195 (493)
T PTZ00421 131 VSFHPSAMNVLASAGAD------MVVNVWDVERGKAVEVIKCH--------SDQITSLEWNL-DGSLLCTTSKDKKLNII 195 (493)
T ss_pred EEeCcCCCCEEEEEeCC------CEEEEEECCCCeEEEEEcCC--------CCceEEEEEEC-CCCEEEEecCCCEEEEE
Confidence 34445445566776643 47999999998744333322 12232333333 67788899988876655
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-EE-CCEEEEec-----CCeEEEeeccccccccccCCcceeeccc
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH-CY-KNQVFVGR-----GGSLEVWSRVREGRNRSCSEGLFRRNFV 426 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~-~g~l~~~~-----g~~~~v~~~~~~~~~~~~~~~~~r~~~~ 426 (472)
|+++-+ .-..+.. ... . ....+. .. ++.|+.++ .+.|.+|.--.. .+.+ ...-.
T Consensus 196 D~rsg~--~v~tl~~-------H~~-~--~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~------~~p~-~~~~~ 256 (493)
T PTZ00421 196 DPRDGT--IVSSVEA-------HAS-A--KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM------ASPY-STVDL 256 (493)
T ss_pred ECCCCc--EEEEEec-------CCC-C--cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC------CCce-eEecc
Confidence 665422 1111111 110 0 011122 22 34555544 367999985322 1111 11001
Q ss_pred cccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 427 DRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 427 ~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
+ .+..-.+..+...|+.|++.=+....|-+||...
T Consensus 257 d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 257 D---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred C---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 1 1112123446667888888876666788898653
No 85
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=91.71 E-value=0.29 Score=41.12 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCCcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCE-EEcCChhhHHHHhhcc-----ccCc-ccCC
Q 012060 14 NGDRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPI-FIDRDPDVFSVLLSLL-----RSNR-LPST 81 (472)
Q Consensus 14 ~~~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~v-fiDrdp~~F~~IL~fl-----rtg~-l~~~ 81 (472)
.++-|+|.- +|+.|...|..-.- |.-+++|+++. +.+.+++ |-|.+..+++.+..|+ |++. ..++
T Consensus 15 ~~~yVkLvS~Ddhefiikre~Amt---SgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiP 91 (112)
T KOG3473|consen 15 DSMYVKLVSSDDHEFIIKREHAMT---SGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIP 91 (112)
T ss_pred chhheEeecCCCcEEEEeehhhhh---hhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCC
Confidence 456788865 56899999887555 56899999853 4566677 5599999999999998 4443 2222
Q ss_pred C---CCcchHHHHhhhhhcC
Q 012060 82 A---SRFSKQELADEALYYG 98 (472)
Q Consensus 82 ~---~~~~v~~Ll~eA~~~q 98 (472)
+ ..+-..+||-+|+|+.
T Consensus 92 eF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 92 EFDIPPEMALELLMAANYLE 111 (112)
T ss_pred CCCCCHHHHHHHHHHhhhhc
Confidence 2 1144678999999874
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.95 E-value=15 Score=40.22 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=44.2
Q ss_pred cCCeEEEEEEeCCCc---------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee--cCCe---EEEEc
Q 012060 279 ATGVVLGSAIAWGAF---------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV--DELT---LFKIC 344 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~---------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~--~~~~---iy~vG 344 (472)
-.|+||+..|.-.+. -+.++|-..|++|++.+|....-. ..---.+..+...... .+++ +.+.+
T Consensus 244 ~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~--~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~ 321 (527)
T TIGR03075 244 ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP--HDEWDYDGVNEMILFDLKKDGKPRKLLAHA 321 (527)
T ss_pred CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC--CCCccccCCCCcEEEEeccCCcEEEEEEEe
Confidence 578999977652221 146799999999999999988641 1111122211111222 2444 77777
Q ss_pred ccCCCccccc
Q 012060 345 SKSGDIAMAD 354 (472)
Q Consensus 345 g~~g~~~~~d 354 (472)
.++|..+..|
T Consensus 322 ~K~G~~~vlD 331 (527)
T TIGR03075 322 DRNGFFYVLD 331 (527)
T ss_pred CCCceEEEEE
Confidence 7877666544
No 87
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.57 E-value=35 Score=38.66 Aligned_cols=168 Identities=22% Similarity=0.252 Sum_probs=92.3
Q ss_pred EEeee----CceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCc-eecceeeeecCCCCccccCCCCcC
Q 012060 144 WIAHG----GQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGI-HFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 144 ~va~G----G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~-~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
++|+| |++-+|+|+. .-.-..-.|+..++++++ -|+.+.|.|+ .+|. ...|+.-+|--.|. .+
T Consensus 321 WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTF--------te 390 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTF--------TE 390 (893)
T ss_pred EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEe--------cc
Confidence 55777 3588899987 332233334444445554 4778999998 4552 23333221111111 11
Q ss_pred cccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEe--cC--CeEEEEEEeC
Q 012060 217 YRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP--AT--GVVLGSAIAW 290 (472)
Q Consensus 217 ~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--~~--g~Lyv~Gg~~ 290 (472)
..+++.|+.+ .+..|+-.- -.-+|-.||... .+ |-=+...|.+.+... .+ |.|..+|..+
T Consensus 391 Hts~Vt~v~f~~~g~~llssS----LDGtVRAwDlkR-------Yr---NfRTft~P~p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSS----LDGTVRAWDLKR-------YR---NFRTFTSPEPIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred CCCceEEEEEEecCCEEEEee----cCCeEEeeeecc-------cc---eeeeecCCCceeeeEEEEcCCCCEEEeeccc
Confidence 2233333333 333344321 123788999988 44 556677776666543 44 7777776643
Q ss_pred CCccccceEEEEcCCCCeeeeEEcCCCCC-CCCcccccccceeeeecCCeEEEEcccCCCc
Q 012060 291 GAFGYSGYVRMWDPRSGEVVWETNEPGSG-RSARFGDSFADVDVDVDELTLFKICSKSGDI 350 (472)
Q Consensus 291 g~~~~~~sve~yDp~~~~~vW~~~~~~~~-~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~ 350 (472)
- =.|-.|+.+|++ ..+-.++ .-|-++.+| .-+++ +-+-|.+|-+.
T Consensus 457 ~-----F~IfvWS~qTGq----llDiLsGHEgPVs~l~f-----~~~~~-~LaS~SWDkTV 502 (893)
T KOG0291|consen 457 S-----FEIFVWSVQTGQ----LLDILSGHEGPVSGLSF-----SPDGS-LLASGSWDKTV 502 (893)
T ss_pred e-----EEEEEEEeecCe----eeehhcCCCCcceeeEE-----ccccC-eEEeccccceE
Confidence 2 279999999999 6655433 234445554 55455 44477777543
No 88
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=90.08 E-value=10 Score=39.22 Aligned_cols=219 Identities=17% Similarity=0.212 Sum_probs=120.1
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCcccc-CC-CCcCcccceeEEEEeCCeEEE--EecCCCCCceeEEEeCCCccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD-PS-DPRIYRATVTAIADSPTTVFS--SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~-~a-~m~~~R~~~~ava~l~g~IYA--Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
|.-++.|+ .++ +...+|..+.+-.- ++ ...+.| +|++.+-+=|. .|. -+.|-|||.+.|+.
T Consensus 163 n~wf~tgs--~Dr-----tikIwDlatg~LkltltGhi~~vr----~vavS~rHpYlFs~ge----dk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 163 NEWFATGS--ADR-----TIKIWDLATGQLKLTLTGHIETVR----GVAVSKRHPYLFSAGE----DKQVKCWDLEYNKV 227 (460)
T ss_pred ceeEEecC--CCc-----eeEEEEcccCeEEEeecchhheee----eeeecccCceEEEecC----CCeeEEEechhhhh
Confidence 45566666 332 44566666655322 11 111223 57777766554 443 35799999999774
Q ss_pred cccc-ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 255 SSEI-GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 255 ~~~~-~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
+.+- |+ =+.+ ..+..++....| +.|| ..+.++.||.||...|-.+... -..+++|.+
T Consensus 228 IR~YhGH-----lS~V--~~L~lhPTldvl-~t~g------rDst~RvWDiRtr~~V~~l~GH--------~~~V~~V~~ 285 (460)
T KOG0285|consen 228 IRHYHGH-----LSGV--YCLDLHPTLDVL-VTGG------RDSTIRVWDIRTRASVHVLSGH--------TNPVASVMC 285 (460)
T ss_pred HHHhccc-----ccee--EEEeccccceeE-EecC------CcceEEEeeecccceEEEecCC--------CCcceeEEe
Confidence 4321 11 0000 111112223333 3333 2458999999999877766644 223444444
Q ss_pred eecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEecC-CeEEEeeccccc
Q 012060 334 DVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGRG-GSLEVWSRVREG 411 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~g-~~~~v~~~~~~~ 411 (472)
-..+..|| -|..|+....=||+.-. +.+.- -+.+++ --.++.+ .-.+|++.+ +.++-|.=
T Consensus 286 ~~~dpqvi-t~S~D~tvrlWDl~agk----t~~tl----t~hkks-----vral~lhP~e~~fASas~dnik~w~~---- 347 (460)
T KOG0285|consen 286 QPTDPQVI-TGSHDSTVRLWDLRAGK----TMITL----THHKKS-----VRALCLHPKENLFASASPDNIKQWKL---- 347 (460)
T ss_pred ecCCCceE-EecCCceEEEeeeccCc----eeEee----ecccce-----eeEEecCCchhhhhccCCccceeccC----
Confidence 55577877 67888765543444211 12221 223331 1112222 236788877 67776644
Q ss_pred cccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeec
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~ 462 (472)
+++.|=.|+-++ .+-|-.+++--|-..|+=.|.-++--|+.
T Consensus 348 -----p~g~f~~nlsgh-----~~iintl~~nsD~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 348 -----PEGEFLQNLSGH-----NAIINTLSVNSDGVLVSGGDNGSIMFWDW 388 (460)
T ss_pred -----Cccchhhccccc-----cceeeeeeeccCceEEEcCCceEEEEEec
Confidence 555555554444 55778888888888888888888777764
No 89
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.49 E-value=21 Score=38.61 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=82.9
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCcccccc-ccceeeeeC-CeEEEEcCcCCCCceecceeeeecCC--CC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVRTHLD-NITSIRHVW-SDVAAVGSDYSSGIHFYDLSSSRHVA--SA 206 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~~~~-~v~~v~~l~-~~lYavGG~~~~g~~~l~sve~ydp~--t~ 206 (472)
++.+|+... |.+.++| |+. ......+.... +...+++.+ +.||+... +| .+-++|+. ..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---~g-----~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---DG-----RLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---CC-----eEEEEECCCCCE
Confidence 466774332 5688888 876 33221111110 111223356 77776443 33 44556654 44
Q ss_pred ccccCCCCcC---cccceeEEEEeCCeEEEEecCCC-----CCceeEEEeCCCcccccccccccCCCccccccc------
Q 012060 207 HWTDPSDPRI---YRATVTAIADSPTTVFSSLVCPH-----KENSVLLIDKSTLQISSEIGRQSGASSKNMAVG------ 272 (472)
Q Consensus 207 ~W~~~a~m~~---~R~~~~ava~l~g~IYAGg~~~~-----~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m------ 272 (472)
.|..-..... ..... +.++.++.+|+|..+.. .-..+-++|..| |+ ..|+.-...
T Consensus 133 ~W~~~~~~~~~~~~~i~s-sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-------G~---~~W~~~~~~~~~~~~ 201 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTG-APTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-------GK---LLWRFYTTEPDPNAF 201 (488)
T ss_pred eeeecCCCCcCcceEecC-CCEEECCEEEEeccccccccCCCCcEEEEEECCC-------Cc---eeeEeeccCCCcCCC
Confidence 5776443221 00111 24566788998532221 135788999999 54 446642210
Q ss_pred --------------ce----eEE-ecCCeEEEEEEeCCC-----------ccccceEEEEcCCCCeeeeEEcC
Q 012060 273 --------------KL----TWI-PATGVVLGSAIAWGA-----------FGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 273 --------------~~----~~~-~~~g~Lyv~Gg~~g~-----------~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.. +-+ ...+++|+..+.+.+ ..+.+++-.+|+.+++++|+...
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 00 011 136889997553211 11245899999999999999754
No 90
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=89.15 E-value=8.7 Score=36.75 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCC-Cc--c--cccccccCCCCcEE-eecCC
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSG-DI--A--MADLRNLGEDPWVY-MEDKN 370 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g-~~--~--~~dl~s~e~d~W~~-~~~~~ 370 (472)
..+|.|+-+++. |....+..........+ +.++|.||=+.-... .. . ..||+ +++|.. +.. +
T Consensus 70 ~~~~Vys~~~~~--Wr~~~~~~~~~~~~~~~------v~~~G~lyw~~~~~~~~~~~~IvsFDl~---~E~f~~~i~~-P 137 (230)
T TIGR01640 70 SEHQVYTLGSNS--WRTIECSPPHHPLKSRG------VCINGVLYYLAYTLKTNPDYFIVSFDVS---SERFKEFIPL-P 137 (230)
T ss_pred ccEEEEEeCCCC--ccccccCCCCccccCCe------EEECCEEEEEEEECCCCCcEEEEEEEcc---cceEeeeeec-C
Confidence 478999999999 99887421111111113 456999998875332 10 1 11332 677884 542 1
Q ss_pred CCcccCCCCCCCcCeEEEEECCEEEEecC----CeEEEeecc
Q 012060 371 PSMISSSGNNNGENKLIHCYKNQVFVGRG----GSLEVWSRV 408 (472)
Q Consensus 371 ~~m~~~~~~~~~~~~~~~~~~g~l~~~~g----~~~~v~~~~ 408 (472)
.... .......|..++|+|-++.. ..+|+|--.
T Consensus 138 ----~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~ 174 (230)
T TIGR01640 138 ----CGNS-DSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLN 174 (230)
T ss_pred ----cccc-ccccceEEEEECCEEEEEEecCCCCcEEEEEEC
Confidence 2111 01125688999999988743 459999653
No 91
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=88.84 E-value=0.25 Score=50.17 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=64.4
Q ss_pred eEEEEeHHHhhccCCCCccccccCC---CCCCCCCEE--EcCChhhHHHHhhccccCcccCCCCCcchHHHHhhhhhcCc
Q 012060 25 KLFETTLSTIQSGGPDSLLYALSNR---QSDEPNPIF--IDRDPDVFSVLLSLLRSNRLPSTASRFSKQELADEALYYGI 99 (472)
Q Consensus 25 ~~F~t~r~tLa~~~pssyf~amf~~---~~~~~~~vf--iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~eA~~~ql 99 (472)
+.|.+.+.+|.+. -.||+..... ......++- +--|-.+|+=|++|+....-.+++ .|+-.+|--++|+|+
T Consensus 14 rdF~C~~~lL~~~--M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~--~NvvsIliSS~FL~M 89 (317)
T PF11822_consen 14 RDFTCPRDLLVSE--MRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP--SNVVSILISSEFLQM 89 (317)
T ss_pred eeeeccHHHHHHh--hHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc--CcEEEeEehhhhhcc
Confidence 5699999999996 5799998853 233334443 467889999999999987777766 899999999999999
Q ss_pred chHHhhhc
Q 012060 100 DSQLKSAM 107 (472)
Q Consensus 100 ~~l~~~c~ 107 (472)
++|++.|.
T Consensus 90 ~~Lve~cl 97 (317)
T PF11822_consen 90 ESLVEECL 97 (317)
T ss_pred HHHHHHHH
Confidence 99999886
No 92
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=88.76 E-value=0.28 Score=41.59 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred EEEE-ECCeEEEEeHHHhhccCCCCccccccCCC--CC-CCCCEEE-cCChhhHHHHhhccccC
Q 012060 18 VKLN-VGGKLFETTLSTIQSGGPDSLLYALSNRQ--SD-EPNPIFI-DRDPDVFSVLLSLLRSN 76 (472)
Q Consensus 18 V~Ln-VGG~~F~t~r~tLa~~~pssyf~amf~~~--~~-~~~~vfi-Drdp~~F~~IL~flrtg 76 (472)
|+|. -+|+.|.+.+..... |..++.|+... .. ...++-+ ++++.+|+.|++|++.-
T Consensus 4 v~L~S~Dg~~f~v~~~~a~~---S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 4 IKLISSDGEVFEVEREVARQ---SKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred EEEEeCCCCEEEecHHHHHH---HHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 4453 378999999998877 67889988642 11 1246655 69999999999999653
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=88.67 E-value=12 Score=38.03 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=57.2
Q ss_pred EEEeCC-eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 224 IADSPT-TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 224 va~l~g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
.+..+. .+|.|+-+ ..|-+||.+|.+ ...||. .-. +......+...|++. +|++ .++|++|
T Consensus 60 c~F~d~~~~~~G~~d----g~vr~~Dln~~~-~~~igt----h~~--~i~ci~~~~~~~~vI-sgsW------D~~ik~w 121 (323)
T KOG1036|consen 60 CAFADESTIVTGGLD----GQVRRYDLNTGN-EDQIGT----HDE--GIRCIEYSYEVGCVI-SGSW------DKTIKFW 121 (323)
T ss_pred eeccCCceEEEeccC----ceEEEEEecCCc-ceeecc----CCC--ceEEEEeeccCCeEE-Eccc------CccEEEE
Confidence 344443 58776544 478899999933 111111 111 111122233456553 4443 3479999
Q ss_pred cCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 303 DPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
|||...++=+...+ ++. -| +.+.+.+-+||..+.....-|||.++
T Consensus 122 D~R~~~~~~~~d~~-----kkV-y~------~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 122 DPRNKVVVGTFDQG-----KKV-YC------MDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccccccccccccC-----ceE-EE------EeccCCEEEEeecCceEEEEEccccc
Confidence 99986533333333 222 22 44466666788877555455898887
No 94
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.13 E-value=5.6 Score=43.62 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=67.3
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcC-c-------ccceeEEEEeCCeEEEEecCCCCCce
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRI-Y-------RATVTAIADSPTTVFSSLVCPHKENS 243 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~-~-------R~~~~ava~l~g~IYAGg~~~~~l~s 243 (472)
.++.++.||+... . + .+.++|..+ ..|+.-..... . ...- +++..+++||++..+ ..
T Consensus 65 Pvv~~g~vyv~s~--~-g-----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~~~~v~v~t~d----g~ 131 (527)
T TIGR03075 65 PLVVDGVMYVTTS--Y-S-----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALYDGKVFFGTLD----AR 131 (527)
T ss_pred CEEECCEEEEECC--C-C-----cEEEEECCCCceeeEecCCCCcccccccccccccc-cceEECCEEEEEcCC----CE
Confidence 3457899998665 2 2 244455443 34654321110 0 0112 267778999995332 35
Q ss_pred eEEEeCCCcccccccccccCCCcccccc-cc------eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAV-GK------LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~-m~------~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
+-++|.+| |+ ..|+.-.. .+ -.=...+++||+.... +..+..+.|..||++|++.+|++-.
T Consensus 132 l~ALDa~T-------Gk---~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 132 LVALDAKT-------GK---VVWSKKNGDYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEECCC-------CC---EEeecccccccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEeccC
Confidence 77899999 44 44654321 00 0112368888885321 1122357899999999999999664
No 95
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=86.65 E-value=30 Score=32.99 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=82.1
Q ss_pred eeeeecCCCCccccCCCCcCccc-----ceeEEEEe---CCe-EEE-EecCC-CCCceeEEEeCCCcccccccccccCCC
Q 012060 197 LSSSRHVASAHWTDPSDPRIYRA-----TVTAIADS---PTT-VFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGAS 265 (472)
Q Consensus 197 sve~ydp~t~~W~~~a~m~~~R~-----~~~ava~l---~g~-IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~ 265 (472)
..-.++|.|.+|..++++..++. .+ +++.- +.+ |.. ..... .....+|+|+..+ +.
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~-~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~------------~~ 81 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTY-FLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGS------------NS 81 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceE-EEeecccCCcEEEEEEEeecCCCCCccEEEEEeCC------------CC
Confidence 45688999999999976654211 12 13321 222 333 22211 1245789999998 34
Q ss_pred cccccccce-----e-EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE-EcCCCCCCCCcccccccceeeeecCC
Q 012060 266 SKNMAVGKL-----T-WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE-TNEPGSGRSARFGDSFADVDVDVDEL 338 (472)
Q Consensus 266 W~~v~~m~~-----~-~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~-~~~~~~~~~~R~~~~~~d~~v~~~~~ 338 (472)
|..+.+... . -..++|.||=.+...... ....|-.||.++.+ |. ..+.. . .+... ...+..++++|
T Consensus 82 Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~--f~~~i~~P--~-~~~~~-~~~~~L~~~~G 154 (230)
T TIGR01640 82 WRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSER--FKEFIPLP--C-GNSDS-VDYLSLINYKG 154 (230)
T ss_pred ccccccCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccce--EeeeeecC--c-ccccc-ccceEEEEECC
Confidence 988864211 0 122677777765432211 11279999999999 88 45431 1 11100 01223588899
Q ss_pred eEEEEcccCCCcccccc---cccCCCCcEEeec
Q 012060 339 TLFKICSKSGDIAMADL---RNLGEDPWVYMED 368 (472)
Q Consensus 339 ~iy~vGg~~g~~~~~dl---~s~e~d~W~~~~~ 368 (472)
+|.++........ .++ +..+...|+..-.
T Consensus 155 ~L~~v~~~~~~~~-~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 155 KLAVLKQKKDTNN-FDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EEEEEEecCCCCc-EEEEEECCCCCCceeEEEE
Confidence 9998886432211 222 2233556987544
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.58 E-value=7.1 Score=43.15 Aligned_cols=250 Identities=18% Similarity=0.190 Sum_probs=123.9
Q ss_pred CCCccccccccceee--eeCCeEEEEcCcCCCCceecceeeeecCC-------CCccccCCCCc-CcccceeEEEEeC-C
Q 012060 161 SVTVRTHLDNITSIR--HVWSDVAAVGSDYSSGIHFYDLSSSRHVA-------SAHWTDPSDPR-IYRATVTAIADSP-T 229 (472)
Q Consensus 161 m~~~R~~~~~v~~v~--~l~~~lYavGG~~~~g~~~l~sve~ydp~-------t~~W~~~a~m~-~~R~~~~ava~l~-g 229 (472)
|.+.|+|---+.+++ +-++.+.|-|| .++.-. +++++.. .|+ ....++. -++.++-++|.-+ +
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgG--LD~~If---lWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGG--LDRKIF---LWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecC--CCccEE---EEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcc
Confidence 556666533333333 35889999999 554321 2233211 111 1222332 3444443233332 3
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEe---------cCCeEEEEEEeCCCccccceEE
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP---------ATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~---------~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
.|+++| +..+.+-.|||+|.+ -.|+++-+. -+|.=..+|+. .++|.
T Consensus 184 t~ivsG---gtek~lr~wDprt~~----------------kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIr 238 (735)
T KOG0308|consen 184 TIIVSG---GTEKDLRLWDPRTCK----------------KIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIR 238 (735)
T ss_pred eEEEec---CcccceEEecccccc----------------ceeeeeccccceEEEEEcCCCCeEeecCC------CceEE
Confidence 477742 346788899999943 126655221 23322233332 35799
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
+||....+++=+...+- ..--... +...-..+| .||.++.....||++.. .=+.+.....|
T Consensus 239 lWdLgqQrCl~T~~vH~--e~VWaL~------~~~sf~~vY-sG~rd~~i~~Tdl~n~~--~~tlick~daP-------- 299 (735)
T KOG0308|consen 239 LWDLGQQRCLATYIVHK--EGVWALQ------SSPSFTHVY-SGGRDGNIYRTDLRNPA--KSTLICKEDAP-------- 299 (735)
T ss_pred eeeccccceeeeEEecc--CceEEEe------eCCCcceEE-ecCCCCcEEecccCCch--hheEeecCCCc--------
Confidence 99988877665554440 1111111 122234566 78899888777888642 11333321111
Q ss_pred CCcCeEEEEECCEEEEe-cCCeEEEeecccc---cccc--ccCCcceeeccccc--cccC---CCCceEEEeecCceEEE
Q 012060 381 NGENKLIHCYKNQVFVG-RGGSLEVWSRVRE---GRNR--SCSEGLFRRNFVDR--VEDS---GRGAISRIDAGGNRLFV 449 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~-~g~~~~v~~~~~~---~~~~--~~~~~~~r~~~~~~--~~~~---~~~~i~~~~~gg~r~f~ 449 (472)
+....+.-++++++++ ..++|+=|..... .-.+ -....--+-+..+. -+|+ +|..|++-+.=+||=-|
T Consensus 300 -v~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhV 378 (735)
T KOG0308|consen 300 -VLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHV 378 (735)
T ss_pred -hhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceE
Confidence 0112222345666665 5677777776533 0000 00111112222221 1222 45588888888887766
Q ss_pred eeecc-ceeEEee
Q 012060 450 SREDV-EGIEVWE 461 (472)
Q Consensus 450 ~~~~~-~~~~vw~ 461 (472)
+-+|- ..+-+|+
T Consensus 379 lTkDa~gnv~lwD 391 (735)
T KOG0308|consen 379 LTKDAKGNVALWD 391 (735)
T ss_pred eeecCCCCEEEEE
Confidence 65554 4577887
No 97
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.32 E-value=27 Score=32.11 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=88.8
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
.|++++. ...+-.||..+.+++.++... ........+.+- +.++++++. .+.+..||+++++.
T Consensus 65 ~l~~~~~----~~~i~i~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~~~~~~~------~~~i~~~~~~~~~~ 127 (289)
T cd00200 65 YLASGSS----DKTIRLWDLETGECVRTLTGH------TSYVSSVAFSPD-GRILSSSSR------DKTIKVWDVETGKC 127 (289)
T ss_pred EEEEEcC----CCeEEEEEcCcccceEEEecc------CCcEEEEEEcCC-CCEEEEecC------CCeEEEEECCCcEE
Confidence 4555544 347888998874433322210 001122333333 455555542 35799999998886
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC 389 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 389 (472)
+...... ...+.+++... ++.++++|..++.+..-|++.-+ .-..+.. ... .-..++.
T Consensus 128 ~~~~~~~--------~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~-------~~~----~i~~~~~ 185 (289)
T cd00200 128 LTTLRGH--------TDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTG-------HTG----EVNSVAF 185 (289)
T ss_pred EEEeccC--------CCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccc--cceeEec-------Ccc----ccceEEE
Confidence 6555532 11121222222 24555555556655443443211 0111111 110 1122232
Q ss_pred ECC--EEEEec-CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecC
Q 012060 390 YKN--QVFVGR-GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 390 ~~g--~l~~~~-g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~ 463 (472)
..+ .|++.. .+.|.+|+-... .. .+.+.+ ..+.|..+.+-. ++++++-.+...+-+|+..
T Consensus 186 ~~~~~~l~~~~~~~~i~i~d~~~~--------~~-~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 186 SPDGEKLLSSSSDGTIKLWDLSTG--------KC-LGTLRG-----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCCcCEEEEecCCCcEEEEECCCC--------ce-ecchhh-----cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 222 555554 588999986422 00 111111 223688888776 5677777767788899864
No 98
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.85 E-value=0.63 Score=46.19 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC-CCCCC---CE-EEcCChhhHHHHhhccccCcccC
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-SDEPN---PI-FIDRDPDVFSVLLSLLRSNRLPS 80 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-~~~~~---~v-fiDrdp~~F~~IL~flrtg~l~~ 80 (472)
....++.|....+.|++||+.|++. -++|+-+.+.. +.+.. ++ |.+.|-.+|+.+|.+++||+.-.
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaR--CpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgm 198 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAAR--CPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGM 198 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhh--CcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccch
Confidence 3456778888889999999999998 55999887654 22222 22 55788899999999999998753
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=85.61 E-value=11 Score=40.18 Aligned_cols=198 Identities=18% Similarity=0.256 Sum_probs=111.9
Q ss_pred EEE-eCCeEEE-EecCCCCCceeEEEeCCCccccccc-ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 224 IAD-SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEI-GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 224 va~-l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~-~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+|+ .|++.+| ||.+ +-|..||+.|.+++.-+ |+ .-+-+.+...--.+-||+++ ...+|-
T Consensus 208 ~avS~Dgkylatgg~d----~~v~Iw~~~t~ehv~~~~gh-------r~~V~~L~fr~gt~~lys~s-------~Drsvk 269 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRD----RHVQIWDCDTLEHVKVFKGH-------RGAVSSLAFRKGTSELYSAS-------ADRSVK 269 (479)
T ss_pred EEEcCCCcEEEecCCC----ceEEEecCcccchhhccccc-------ccceeeeeeecCccceeeee-------cCCceE
Confidence 555 4566777 6543 45789999997743321 11 11113334334566677653 245788
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
.|+......|=++-.. .+++.+++|-. ..+.--|||.|.... | |.- ++..+.|-.+.
T Consensus 270 vw~~~~~s~vetlyGH--------qd~v~~IdaL~-reR~vtVGgrDrT~r---l-------wKi-~eesqlifrg~--- 326 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGH--------QDGVLGIDALS-RERCVTVGGRDRTVR---L-------WKI-PEESQLIFRGG--- 326 (479)
T ss_pred EEehhHhHHHHHHhCC--------ccceeeechhc-ccceEEeccccceeE---E-------Eec-cccceeeeeCC---
Confidence 8877666622222222 45566666665 456666888885432 1 322 33333322222
Q ss_pred CCcCeEEEEECCEEEEecC--CeEEEeeccccccccccCCcce-eeccccccc--cCCCC--ceEEE-eecCceEEEeee
Q 012060 381 NGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLF-RRNFVDRVE--DSGRG--AISRI-DAGGNRLFVSRE 452 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~-r~~~~~~~~--~~~~~--~i~~~-~~gg~r~f~~~~ 452 (472)
+.+--.+|..+..=|++|. |+|-+||-... +-+| +++-=+-.+ +.-.+ =|+.+ .++|.-||++=.
T Consensus 327 ~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK-------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 327 EGSIDCVAFINDEHFVSGSDNGSIALWSLLKK-------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred CCCeeeEEEecccceeeccCCceEEEeeeccc-------CceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 2255667788888899977 99999997543 0111 111111111 11222 46665 479999999999
Q ss_pred ccceeEEeecCCCCcce
Q 012060 453 DVEGIEVWESSNLSGVV 469 (472)
Q Consensus 453 ~~~~~~vw~~~~~~~~~ 469 (472)
-.-.|-+|.++.-.-+|
T Consensus 400 ~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRAI 416 (479)
T ss_pred CCCceEEEEecCCcccc
Confidence 99999999987653333
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=8.7 Score=41.61 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=81.7
Q ss_pred cceeeccCCcEEEeee---CceEEee-cccCCCCCccc-cccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCc
Q 012060 133 TFTASSDDGSLWIAHG---GQISVYD-WNLSHSVTVRT-HLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAH 207 (472)
Q Consensus 133 a~r~~~~~g~l~va~G---G~Ve~YD-W~~~~m~~~R~-~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~ 207 (472)
+....+. |..+ |+| |.|+.|| +.....+..+- +-+-+ ++...++.+...|. .+|.-. -+|.+..+
T Consensus 222 Sv~ws~~-G~~L-avG~~~g~v~iwD~~~~k~~~~~~~~h~~rv-g~laW~~~~lssGs--r~~~I~-----~~dvR~~~ 291 (484)
T KOG0305|consen 222 SVKWSPD-GSHL-AVGTSDGTVQIWDVKEQKKTRTLRGSHASRV-GSLAWNSSVLSSGS--RDGKIL-----NHDVRISQ 291 (484)
T ss_pred EEEECCC-CCEE-EEeecCCeEEEEehhhccccccccCCcCcee-EEEeccCceEEEec--CCCcEE-----EEEEecch
Confidence 3433334 4444 677 6799999 66533333333 22222 33345678888887 344221 22222221
Q ss_pred cccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc-cceeEEecCCeEE
Q 012060 208 WTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-GKLTWIPATGVVL 284 (472)
Q Consensus 208 W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-m~~~~~~~~g~Ly 284 (472)
..+.-|+..+..++++.-. ++..+| ||. .|.+-.||-...+|.--+ |...++ =.+.|++...-|.
T Consensus 292 -~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~~Iwd~~~~~p~~~~-------~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 292 -HVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVVFIWDGLSPEPKFTF-------TEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred -hhhhhhhcccceeeeeEECCCCCeeccCCC----ccceEeccCCCccccEEE-------eccceeeeEeeeCCCccCce
Confidence 1111154445444334433 455777 543 467888998664432222 333333 2356888787888
Q ss_pred EEEEeCCCccccceEEEEcCCCCe
Q 012060 285 GSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 285 v~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
|+|| |. -...|..||+.+++
T Consensus 360 AsGG--Gs--~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 360 ATGG--GS--ADRCIKFWNTNTGA 379 (484)
T ss_pred EEcC--CC--cccEEEEEEcCCCc
Confidence 8776 44 25689999999987
No 101
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.84 E-value=48 Score=39.14 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=76.8
Q ss_pred CcEEEeeeC-ceEEeeccc-CCCCCccc---cccccceeeee---CCeEEEEcCcCCCCceecceeeeecCCCC------
Q 012060 141 GSLWIAHGG-QISVYDWNL-SHSVTVRT---HLDNITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRHVASA------ 206 (472)
Q Consensus 141 g~l~va~GG-~Ve~YDW~~-~~m~~~R~---~~~~v~~v~~l---~~~lYavGG~~~~g~~~l~sve~ydp~t~------ 206 (472)
..+++|-+- .|.+|||.. ..+..... ...-++.+..+ |..+..+|. .+|. +-.|++..+
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas--~dGv-----IRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS--SDGV-----IRIWKDYADKWKKPE 1149 (1387)
T ss_pred ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec--cCce-----EEEecccccccCCce
Confidence 345533322 388999875 33221111 11122334444 345666666 4662 333433333
Q ss_pred ---ccccCCCC-cCcccceeEEEEe---CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec
Q 012060 207 ---HWTDPSDP-RIYRATVTAIADS---PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA 279 (472)
Q Consensus 207 ---~W~~~a~m-~~~R~~~~ava~l---~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~ 279 (472)
.|..+..| ...|.. +++... .|+||++|+ ..+|-.||.++-+.+..|--- .-+.+.+ +.-...
T Consensus 1150 LVTaw~~Ls~~~~~~r~~-~~v~dWqQ~~G~Ll~tGd----~r~IRIWDa~~E~~~~diP~~---s~t~vTa--LS~~~~ 1219 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGT-GLVVDWQQQSGHLLVTGD----VRSIRIWDAHKEQVVADIPYG---SSTLVTA--LSADLV 1219 (1387)
T ss_pred eEEeeccccccCccCCCC-CeeeehhhhCCeEEecCC----eeEEEEEecccceeEeecccC---CCcccee--eccccc
Confidence 37776654 455543 335544 478999544 468999999996655544441 1111111 112225
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+|-+.|+|-.|| +|+.||-|...
T Consensus 1220 ~gn~i~AGfaDG------svRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1220 HGNIIAAGFADG------SVRVYDRRMAP 1242 (1387)
T ss_pred CCceEEEeecCC------ceEEeecccCC
Confidence 577778876444 69999977664
No 102
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.16 E-value=0.7 Score=42.72 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=59.7
Q ss_pred ECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCE-EEcCChhhHHHHhhccccCccc---------------CCC-
Q 012060 22 VGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPI-FIDRDPDVFSVLLSLLRSNRLP---------------STA- 82 (472)
Q Consensus 22 VGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~v-fiDrdp~~F~~IL~flrtg~l~---------------~~~- 82 (472)
-+|+.|.+...++.. +..+..++... ......+ ...+.+.+|..||.|++.=+-. +++
T Consensus 12 sDG~~f~ve~~~a~~---s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 12 SDGEIFEVEEEVARQ---SQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred cCCceeehhHHHHHH---hHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 489999999999988 56777776532 1121244 3359999999999999773211 100
Q ss_pred -------CCcchHHHHhhhhhcCcchHHhhhc
Q 012060 83 -------SRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 83 -------~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+...+.+|+.+|+||.|..|+..||
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~gLl~~~c 120 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKGLLDLTC 120 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHHHHHHHH
Confidence 1135678899999999999999998
No 103
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.95 E-value=20 Score=36.11 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEec---CCCCCceeEEEeCCCcccccccccccCCC
Q 012060 190 SGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLV---CPHKENSVLLIDKSTLQISSEIGRQSGAS 265 (472)
Q Consensus 190 ~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~---~~~~l~sVE~YDp~t~~~~~~~~~~~~~~ 265 (472)
.|.-.+..+-.||+...+|..+..= -.-.+.++... ++.|||+|. ++.....+-.||..+ +.
T Consensus 10 aGsL~C~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~------------~~ 75 (281)
T PF12768_consen 10 AGSLPCPGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN------------QT 75 (281)
T ss_pred CCCcCCCEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC------------Ce
Confidence 3443577788999999999987643 12233334444 678999543 122466788999999 34
Q ss_pred ccccccc-------ceeEEe----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 266 SKNMAVG-------KLTWIP----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 266 W~~v~~m-------~~~~~~----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
|+.+... ...... -...++++|.. .. -..++..|| -.+ |.....
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~-g~~~l~~~d--Gs~--W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--AN-GSTFLMKYD--GSS--WSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEecee--cC-CCceEEEEc--CCc--eEeccc
Confidence 9777662 122221 33457776653 11 245899996 557 988877
No 104
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.43 E-value=17 Score=35.74 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=83.1
Q ss_pred eeeCc--eEEeeccc-CCCCCccccccccceeeeeCC-eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccce
Q 012060 146 AHGGQ--ISVYDWNL-SHSVTVRTHLDNITSIRHVWS-DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATV 221 (472)
Q Consensus 146 a~GG~--Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~-~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~ 221 (472)
..||- |.+||-.. .-...-|.|.+-++.+.+-+. .+.+-|+ ++ .++-++|-++++-.++.-+.+.+-++
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs--fD-----~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS--FD-----SSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc--cc-----ceeEEEEcccCCCCccchhhhhcCce
Confidence 55664 66666333 344444666666665554433 4455555 44 46788999999999999999999998
Q ss_pred eEEEEeCCe-EEEEecCCCCCceeEEEeCCCccccccccccc-CCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 222 TAIADSPTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQS-GASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 222 ~ava~l~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~-~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
. ...+.++ |.||--+ -++-.||.+. |+-. +..=+++ .......-.+++.|+. ..+++
T Consensus 149 ~-Si~v~~heIvaGS~D----GtvRtydiR~-------G~l~sDy~g~pi--t~vs~s~d~nc~La~~-------l~stl 207 (307)
T KOG0316|consen 149 S-SIDVAEHEIVAGSVD----GTVRTYDIRK-------GTLSSDYFGHPI--TSVSFSKDGNCSLASS-------LDSTL 207 (307)
T ss_pred e-EEEecccEEEeeccC----CcEEEEEeec-------ceeehhhcCCcc--eeEEecCCCCEEEEee-------cccee
Confidence 7 5566666 5555333 3678999998 3321 1111111 1222334566666642 24589
Q ss_pred EEEcCCCCe
Q 012060 300 RMWDPRSGE 308 (472)
Q Consensus 300 e~yDp~~~~ 308 (472)
++.|-.|++
T Consensus 208 rLlDk~tGk 216 (307)
T KOG0316|consen 208 RLLDKETGK 216 (307)
T ss_pred eecccchhH
Confidence 999999998
No 105
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.43 E-value=40 Score=34.94 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=50.5
Q ss_pred eEEE--EecCC----CCCceeEEEeCCCcccccccccccCCCcccccccc-eeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 230 TVFS--SLVCP----HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK-LTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 230 ~IYA--Gg~~~----~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~-~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
.||+ .++.. .|..-||.||+.|++|..||--+....-..++.-. .+...-+..+||--- + -..+|-.-
T Consensus 49 ~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~---T--Pa~SVtVV 123 (342)
T PF06433_consen 49 TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF---T--PATSVTVV 123 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE---S--SSEEEEEE
T ss_pred EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc---C--CCCeEEEE
Confidence 4886 44432 35889999999999999988774321112111111 122235566666422 1 24599999
Q ss_pred cCCCCeeeeEEcCC
Q 012060 303 DPRSGEVVWETNEP 316 (472)
Q Consensus 303 Dp~~~~~vW~~~~~ 316 (472)
|...+++|=|.--|
T Consensus 124 Dl~~~kvv~ei~~P 137 (342)
T PF06433_consen 124 DLAAKKVVGEIDTP 137 (342)
T ss_dssp ETTTTEEEEEEEGT
T ss_pred ECCCCceeeeecCC
Confidence 99999988776666
No 106
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.37 E-value=59 Score=33.53 Aligned_cols=133 Identities=16% Similarity=0.189 Sum_probs=77.7
Q ss_pred cCCCCccccCCCCcCcccceeE-EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc-----ccee
Q 012060 202 HVASAHWTDPSDPRIYRATVTA-IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-----GKLT 275 (472)
Q Consensus 202 dp~t~~W~~~a~m~~~R~~~~a-va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-----m~~~ 275 (472)
.-.+..|...-........... .+..++.||++..++ .+-.+|+.+.+ -.|+.-.. +..+
T Consensus 41 ~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G----~i~A~d~~~g~----------~~W~~~~~~~~~~~~~~ 106 (370)
T COG1520 41 TSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDG----NIFALNPDTGL----------VKWSYPLLGAVAQLSGP 106 (370)
T ss_pred cCcceeeeeecccCccceEeccccEeeCCeEEEecCCC----cEEEEeCCCCc----------EEecccCcCcceeccCc
Confidence 3355667543222222223222 267789999963333 57788999933 23744333 3333
Q ss_pred EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 276 WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 276 ~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
....+|+||+... .+.+.|+|+++++.+|+...++ + .+...+ +.+.++.+|... .++.+.. |
T Consensus 107 ~~~~~G~i~~g~~-------~g~~y~ld~~~G~~~W~~~~~~-~--~~~~~~-----~v~~~~~v~~~s-~~g~~~a--l 168 (370)
T COG1520 107 ILGSDGKIYVGSW-------DGKLYALDASTGTLVWSRNVGG-S--PYYASP-----PVVGDGTVYVGT-DDGHLYA--L 168 (370)
T ss_pred eEEeCCeEEEecc-------cceEEEEECCCCcEEEEEecCC-C--eEEecC-----cEEcCcEEEEec-CCCeEEE--E
Confidence 4445888888644 2379999999999999999995 2 333333 356677877664 2333221 3
Q ss_pred ccc-CCCCcEEe
Q 012060 356 RNL-GEDPWVYM 366 (472)
Q Consensus 356 ~s~-e~d~W~~~ 366 (472)
+.- .+..|..=
T Consensus 169 ~~~tG~~~W~~~ 180 (370)
T COG1520 169 NADTGTLKWTYE 180 (370)
T ss_pred EccCCcEEEEEe
Confidence 322 26668753
No 107
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.14 E-value=22 Score=36.66 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCCCc--cccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAH--WTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~--W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
+..++.+|+.. .+| .+-.+|+.+.+ |.....-...-.+- .+..-+|+||+|..++ .+=+||+.+
T Consensus 65 ~~~dg~v~~~~---~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~-~~~~~~G~i~~g~~~g----~~y~ld~~~- 130 (370)
T COG1520 65 ADGDGTVYVGT---RDG-----NIFALNPDTGLVKWSYPLLGAVAQLSG-PILGSDGKIYVGSWDG----KLYALDAST- 130 (370)
T ss_pred EeeCCeEEEec---CCC-----cEEEEeCCCCcEEecccCcCcceeccC-ceEEeCCeEEEecccc----eEEEEECCC-
Confidence 34788888863 345 45567777776 86644320011111 1444489999965444 577899987
Q ss_pred ccccccccccCCCcccccccc----eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 253 QISSEIGRQSGASSKNMAVGK----LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~----~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
|+ ..|+.-.+.. -+-...++.+|+.. ..+.+-+.|+.+++..|+..-+.. ...+.....
T Consensus 131 ------G~---~~W~~~~~~~~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~ 193 (370)
T COG1520 131 ------GT---LVWSRNVGGSPYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSP 193 (370)
T ss_pred ------Cc---EEEEEecCCCeEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCc
Confidence 44 4588877761 11123667777642 246799999999999999766521 233333332
Q ss_pred cceeeeecCCeEEEE
Q 012060 329 ADVDVDVDELTLFKI 343 (472)
Q Consensus 329 ~d~~v~~~~~~iy~v 343 (472)
....+.+|+-
T Consensus 194 -----~~~~~~vy~~ 203 (370)
T COG1520 194 -----AIASGTVYVG 203 (370)
T ss_pred -----eeecceEEEe
Confidence 3556777744
No 108
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=82.73 E-value=0.93 Score=34.79 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=40.0
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhcccc
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRS 75 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrt 75 (472)
|+|.- +|+.|.+.+.++.. |..++.|+.........+-+ ++++.+|+.|++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~~---S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAKQ---SKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHTT---SHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHHH---hHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence 44433 78999999999987 67999998643222224644 8999999999999853
No 109
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=82.25 E-value=0.23 Score=55.83 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=57.4
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE---cCChhhHHHHhhccc-cCcccCCCCCcc---h
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI---DRDPDVFSVLLSLLR-SNRLPSTASRFS---K 87 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi---Drdp~~F~~IL~flr-tg~l~~~~~~~~---v 87 (472)
.-+|++. +|+.|.+|+-.|.+. ..||..||..--.+...+.. -...++++.||+|+| +-+..+..+..+ .
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aR--lEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSAR--LEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeH--HHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3455666 999999999999998 78999998742111122322 345799999999999 444332211111 2
Q ss_pred HHHHhhhhhcCcchHHhhhc
Q 012060 88 QELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~ 107 (472)
-++|.-|+.|=|..+..-|.
T Consensus 789 ~~il~iaDqlli~~Lk~Ice 808 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICE 808 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666665
No 110
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.13 E-value=37 Score=35.61 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=92.6
Q ss_pred cceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC-----eEEE-EecCCCCCcee
Q 012060 171 ITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT-----TVFS-SLVCPHKENSV 244 (472)
Q Consensus 171 v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g-----~IYA-Gg~~~~~l~sV 244 (472)
+.+++..++.|...=+ +|.-.+...+.-|.+ -.++...+++-+ ++.+.+ .|.| ||. .+.+-+
T Consensus 108 I~gl~~~dg~Litc~~---sG~l~~~~~k~~d~h------ss~l~~la~g~g-~~~~r~~~~~p~Iva~GGk--e~~n~l 175 (412)
T KOG3881|consen 108 IKGLKLADGTLITCVS---SGNLQVRHDKSGDLH------SSKLIKLATGPG-LYDVRQTDTDPYIVATGGK--ENINEL 175 (412)
T ss_pred ccchhhcCCEEEEEec---CCcEEEEeccCCccc------cccceeeecCCc-eeeeccCCCCCceEecCch--hcccce
Confidence 3345556777665533 343333334433322 122222233332 444432 5888 743 236889
Q ss_pred EEEeCCCcccccccccccCCCcccccc------ccee-EEe----cC---CeEEEEEEeCCCccccceEEEEcCCCCe-e
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAV------GKLT-WIP----AT---GVVLGSAIAWGAFGYSGYVRMWDPRSGE-V 309 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~------m~~~-~~~----~~---g~Lyv~Gg~~g~~~~~~sve~yDp~~~~-~ 309 (472)
+.||.+..+ ..|+...+ |..+ |.. +. ..-+|.+- ....|+.|||+.++ +
T Consensus 176 kiwdle~~~----------qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T------~~hqvR~YDt~~qRRP 239 (412)
T KOG3881|consen 176 KIWDLEQSK----------QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT------RYHQVRLYDTRHQRRP 239 (412)
T ss_pred eeeecccce----------eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe------cceeEEEecCcccCcc
Confidence 999999843 34665433 2222 211 11 33344322 24589999999885 2
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC 389 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 389 (472)
|=++- - + -.++.-++....++.|| +|-..+.++..|+|.-- -.. ....|...+-..|+|
T Consensus 240 V~~fd-~--~-----E~~is~~~l~p~gn~Iy-~gn~~g~l~~FD~r~~k-----l~g-------~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 240 VAQFD-F--L-----ENPISSTGLTPSGNFIY-TGNTKGQLAKFDLRGGK-----LLG-------CGLKGITGSIRSIHC 298 (412)
T ss_pred eeEec-c--c-----cCcceeeeecCCCcEEE-EecccchhheecccCce-----eec-------cccCCccCCcceEEE
Confidence 21111 0 1 23332333456677777 67666766665666421 111 111234446778999
Q ss_pred ECC-EEEEecC
Q 012060 390 YKN-QVFVGRG 399 (472)
Q Consensus 390 ~~g-~l~~~~g 399 (472)
|.+ ++.++.|
T Consensus 299 hp~~~~las~G 309 (412)
T KOG3881|consen 299 HPTHPVLASCG 309 (412)
T ss_pred cCCCceEEeec
Confidence 998 7777777
No 111
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.87 E-value=8 Score=42.28 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=44.4
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec-C-CeEEEEcccCCCccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD-E-LTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~-~-~~iy~vGg~~g~~~~~dl~ 356 (472)
.+++| ++|+. .+.||+||||+.+.|=+.-.+++-...-+++.++-|++... + +.=++||-.+|....-|||
T Consensus 186 ~hgLl-a~Gt~------~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 186 EHGLL-ACGTE------DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred ccceE-Eeccc------CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 55554 55553 45799999999987766666643333334444444444332 2 4556677677766655787
Q ss_pred ccC
Q 012060 357 NLG 359 (472)
Q Consensus 357 s~e 359 (472)
.-.
T Consensus 259 a~~ 261 (703)
T KOG2321|consen 259 ASK 261 (703)
T ss_pred cCC
Confidence 544
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=80.67 E-value=5.3 Score=41.35 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=57.1
Q ss_pred eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
-|+.||+..+.|++.+. |-.=.-.....-+..-.|.++++. .++|-+||.|+++++=..+-. |++-
T Consensus 168 ~i~IWD~~R~~Pv~sms------wG~Dti~svkfNpvETsILas~~s------DrsIvLyD~R~~~Pl~KVi~~--mRTN 233 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMS------WGADSISSVKFNPVETSILASCAS------DRSIVLYDLRQASPLKKVILT--MRTN 233 (433)
T ss_pred eeeecccccCCccceee------cCCCceeEEecCCCcchheeeecc------CCceEEEecccCCccceeeee--cccc
Confidence 58999998877665443 322111112222355556666552 457999999999855444433 2322
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
..|. -- +...|++|..|-.+..-|+|.++
T Consensus 234 --~Isw-----nP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 234 --TICW-----NP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred --ceec-----Cc-cccceeeccccccceehhhhhhc
Confidence 3343 44 77788888877777777787766
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=80.42 E-value=44 Score=34.02 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=86.0
Q ss_pred CceEEeecccCCCC-CccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNLSHSV-TVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.+..||-...+|. ..+... .+.++++.+..-.++|| .+| .+-.||..+.+=..+..-..+-. ++.-.
T Consensus 35 gslrlYdv~~~~l~~~~~~~~-plL~c~F~d~~~~~~G~--~dg-----~vr~~Dln~~~~~~igth~~~i~---ci~~~ 103 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKLKFKHGA-PLLDCAFADESTIVTGG--LDG-----QVRRYDLNTGNEDQIGTHDEGIR---CIEYS 103 (323)
T ss_pred CcEEEEeccchhhhhheecCC-ceeeeeccCCceEEEec--cCc-----eEEEEEecCCcceeeccCCCceE---EEEee
Confidence 44778883321222 223332 23356677877777888 555 56788877766444432222211 23333
Q ss_pred --CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 228 --PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 228 --~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
.|.+-+|+++ ++|+.|||..-+++--+++ +-|.-.+.+.+-..++|.. ...|-.||.|
T Consensus 104 ~~~~~vIsgsWD----~~ik~wD~R~~~~~~~~d~----------~kkVy~~~v~g~~LvVg~~------~r~v~iyDLR 163 (323)
T KOG1036|consen 104 YEVGCVISGSWD----KTIKFWDPRNKVVVGTFDQ----------GKKVYCMDVSGNRLVVGTS------DRKVLIYDLR 163 (323)
T ss_pred ccCCeEEEcccC----ccEEEEecccccccccccc----------CceEEEEeccCCEEEEeec------CceEEEEEcc
Confidence 5666666665 5899999996221111111 1133333344444444441 3479999999
Q ss_pred CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccc
Q 012060 306 SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAM 352 (472)
Q Consensus 306 ~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~ 352 (472)
+..-.-...+...--.-|.-. .+=++.=|+++.-+|....
T Consensus 164 n~~~~~q~reS~lkyqtR~v~-------~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVA-------LVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred cccchhhhccccceeEEEEEE-------EecCCCceEEEeecceEEE
Confidence 886222222220001122222 2337777888888876543
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=80.22 E-value=1.1e+02 Score=34.41 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=71.3
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMI 374 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~ 374 (472)
-++|..||+..++ ....- ...-.|. .-++++..++++| ++|-++.... ++... ..+|+....+.-.
T Consensus 224 ~G~V~FWd~~~gT----LiqS~---~~h~adV-l~Lav~~~~d~vf-saGvd~~ii~--~~~~~~~~~wv~~~~r~~h-- 290 (691)
T KOG2048|consen 224 AGTVTFWDSIFGT----LIQSH---SCHDADV-LALAVADNEDRVF-SAGVDPKIIQ--YSLTTNKSEWVINSRRDLH-- 290 (691)
T ss_pred CceEEEEcccCcc----hhhhh---hhhhcce-eEEEEcCCCCeEE-EccCCCceEE--EEecCCccceeeeccccCC--
Confidence 4689999999998 55441 1111221 1234455556766 5566655442 33222 5569988763322
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecCCeEEEeeccccccccccCCcceeecccccc---ccCCCCceEEEeecCceEEEee
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRV---EDSGRGAISRIDAGGNRLFVSR 451 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~~i~~~~~gg~r~f~~~ 451 (472)
++ .=-.+++++.+||..|-+-.=+.+.... -+++++. .-..+ .+.. ..+=+||++.+
T Consensus 291 -~h-----dvrs~av~~~~l~sgG~d~~l~i~~s~~------------~~~~~h~~~~~~p~~-~~v~-~a~~~~L~~~w 350 (691)
T KOG2048|consen 291 -AH-----DVRSMAVIENALISGGRDFTLAICSSRE------------FKNMDHRQKNLFPAS-DRVS-VAPENRLLVLW 350 (691)
T ss_pred -cc-----cceeeeeecceEEecceeeEEEEccccc------------cCchhhhcccccccc-ceee-cCccceEEEEe
Confidence 22 2346788999887776665555555422 1111211 11122 2222 34668999999
Q ss_pred eccceeEEee
Q 012060 452 EDVEGIEVWE 461 (472)
Q Consensus 452 ~~~~~~~vw~ 461 (472)
++. +++.|-
T Consensus 351 ~~h-~v~lwr 359 (691)
T KOG2048|consen 351 KAH-GVDLWR 359 (691)
T ss_pred ccc-ccccee
Confidence 764 556674
No 115
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.14 E-value=27 Score=38.49 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=89.6
Q ss_pred eEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP- 228 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~- 228 (472)
|.+|+++. +...+.|.+.+.|. ...+++.+.+.|. ++| ++-.||+.+.+-...-.-++.|-. ++.+-.
T Consensus 313 VkVW~v~n~~~l~l~~~h~~~V~-~v~~~~~~lvsgs--~d~-----~v~VW~~~~~~cl~sl~gH~~~V~--sl~~~~~ 382 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGHTGPVN-CVQLDEPLLVSGS--YDG-----TVKVWDPRTGKCLKSLSGHTGRVY--SLIVDSE 382 (537)
T ss_pred EEEEeccCcceEEEeccccccEE-EEEecCCEEEEEe--cCc-----eEEEEEhhhceeeeeecCCcceEE--EEEecCc
Confidence 55555554 66666665444443 3456677777776 555 677888886653332222222222 232223
Q ss_pred CeEEEEecCCCCCceeEEEeCCCc-ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 229 TTVFSSLVCPHKENSVLLIDKSTL-QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 229 g~IYAGg~~~~~l~sVE~YDp~t~-~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
..+|-|.. ..+|..||+.+. +.+--+.. = .+-..-+.+.+.+++++.. .+.|..||-.++
T Consensus 383 ~~~~Sgs~----D~~IkvWdl~~~~~c~~tl~~-----h----~~~v~~l~~~~~~Lvs~~a------D~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 383 NRLLSGSL----DTTIKVWDLRTKRKCIHTLQG-----H----TSLVSSLLLRDNFLVSSSA------DGTIKLWDAEEG 443 (537)
T ss_pred ceEEeeee----ccceEeecCCchhhhhhhhcC-----C----cccccccccccceeEeccc------cccEEEeecccC
Confidence 33443433 368999999994 21000000 0 0111223366777777653 347999999999
Q ss_pred eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 308 EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 308 ~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+++=+...+ ...+..+ .......+++.+.++....-||++-.
T Consensus 444 ~~~~~~~~~-----~~~~v~~-----l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 444 ECLRTLEGR-----HVGGVSA-----LALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ceeeeeccC-----CcccEEE-----eecCcceEEEEecCCeeEEEecccCc
Confidence 954444432 1122321 22223666677777766555666544
No 116
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.02 E-value=15 Score=36.15 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=54.3
Q ss_pred CceeEEEeCCCcccccccccccCCCcccc-cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNM-AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
.+.|-+||.+|.+.+. + |.-= +-.+.-+..-..-+.++|+ +.++|++||=|++. -+++.- .
T Consensus 80 Dk~v~vwDV~TGkv~R---r-----~rgH~aqVNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~s--~ePiQi--l 141 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDR---R-----FRGHLAQVNTVRFNEESSVVASGS------FDSSVRLWDCRSRS--FEPIQI--L 141 (307)
T ss_pred CceEEEEEcccCeeee---e-----cccccceeeEEEecCcceEEEecc------ccceeEEEEcccCC--CCccch--h
Confidence 4689999999944221 1 1111 1122333444555666655 45689999999998 444443 2
Q ss_pred CCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 320 RSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
.+.+-+.. - ..+.+..-+.|..||....-|+|
T Consensus 142 dea~D~V~--S---i~v~~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 142 DEAKDGVS--S---IDVAEHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred hhhcCcee--E---EEecccEEEeeccCCcEEEEEee
Confidence 34444443 2 33455667778888886655665
No 117
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=79.92 E-value=11 Score=40.92 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=67.4
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCC--CCccccCCCCcCcc-----cceeEEEEeC-CeEEEEecCCCCCceeE
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTDPSDPRIYR-----ATVTAIADSP-TTVFSSLVCPHKENSVL 245 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~~a~m~~~R-----~~~~ava~l~-g~IYAGg~~~~~l~sVE 245 (472)
.++.++.||+... +| .+.++|+. ...|+.-......+ ..- +++..+ +.||++..+ ..|-
T Consensus 57 Pvv~~g~vy~~~~---~g-----~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~----g~v~ 123 (488)
T cd00216 57 PLVVDGDMYFTTS---HS-----ALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFD----GRLV 123 (488)
T ss_pred CEEECCEEEEeCC---CC-----cEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeEEEecCC----CeEE
Confidence 3457999998765 22 34555654 34476533221000 011 245566 899995332 4678
Q ss_pred EEeCCCcccccccccccCCCcccccccce--------eEEecCCeEEEEEEeCCCc---cccceEEEEcCCCCeeeeEEc
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVGKL--------TWIPATGVVLGSAIAWGAF---GYSGYVRMWDPRSGEVVWETN 314 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m~~--------~~~~~~g~Lyv~Gg~~g~~---~~~~sve~yDp~~~~~vW~~~ 314 (472)
++|++| |+ ..|+.-..... .-...++++|+... ++.. +..+.+-++|+.|++.+|...
T Consensus 124 AlD~~T-------G~---~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~-~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 124 ALDAET-------GK---QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSS-GAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEECCC-------CC---EeeeecCCCCcCcceEecCCCEEECCEEEEecc-ccccccCCCCcEEEEEECCCCceeeEee
Confidence 899999 44 44665433210 01225677776432 2211 134689999999999999875
Q ss_pred C
Q 012060 315 E 315 (472)
Q Consensus 315 ~ 315 (472)
.
T Consensus 193 ~ 193 (488)
T cd00216 193 T 193 (488)
T ss_pred c
Confidence 4
No 118
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=79.81 E-value=41 Score=35.05 Aligned_cols=219 Identities=14% Similarity=0.149 Sum_probs=107.4
Q ss_pred CcEEEee-eCceEEeecccCCCCCccccccccceeee--eC--CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc
Q 012060 141 GSLWIAH-GGQISVYDWNLSHSVTVRTHLDNITSIRH--VW--SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR 215 (472)
Q Consensus 141 g~l~va~-GG~Ve~YDW~~~~m~~~R~~~~~v~~v~~--l~--~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~ 215 (472)
..++.++ +++|-||| +..-...|.+||-..++.. +. -.+.+.||+ + .+.-.+|.++.. ++--|.
T Consensus 206 pYlFs~gedk~VKCwD--Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~gr--D-----st~RvWDiRtr~--~V~~l~ 274 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWD--LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGR--D-----STIRVWDIRTRA--SVHVLS 274 (460)
T ss_pred ceEEEecCCCeeEEEe--chhhhhHHHhccccceeEEEeccccceeEEecCC--c-----ceEEEeeecccc--eEEEec
Confidence 4555332 24588877 3222233444433222222 33 345667773 3 244566766653 222232
Q ss_pred Ccc---cceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeE-EecCC--eEEEEEEe
Q 012060 216 IYR---ATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW-IPATG--VVLGSAIA 289 (472)
Q Consensus 216 ~~R---~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~-~~~~g--~Lyv~Gg~ 289 (472)
-.+ +.+. +-..|..||.|- ...+|--||...++ ..-+....-+.-| +.++- .+||+++
T Consensus 275 GH~~~V~~V~-~~~~dpqvit~S----~D~tvrlWDl~agk----------t~~tlt~hkksvral~lhP~e~~fASas- 338 (460)
T KOG0285|consen 275 GHTNPVASVM-CQPTDPQVITGS----HDSTVRLWDLRAGK----------TMITLTHHKKSVRALCLHPKENLFASAS- 338 (460)
T ss_pred CCCCcceeEE-eecCCCceEEec----CCceEEEeeeccCc----------eeEeeecccceeeEEecCCchhhhhccC-
Confidence 222 2332 334577888742 24588889998833 1111111111111 12332 3344432
Q ss_pred CCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecC
Q 012060 290 WGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDK 369 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~ 369 (472)
-+.+++|+.-.+. .....+.... ...++ ++..+-.|+.||.+|...+-|.++--. ......
T Consensus 339 ------~dnik~w~~p~g~----f~~nlsgh~~-iintl-----~~nsD~v~~~G~dng~~~fwdwksg~n--yQ~~~t- 399 (460)
T KOG0285|consen 339 ------PDNIKQWKLPEGE----FLQNLSGHNA-IINTL-----SVNSDGVLVSGGDNGSIMFWDWKSGHN--YQRGQT- 399 (460)
T ss_pred ------CccceeccCCccc----hhhccccccc-eeeee-----eeccCceEEEcCCceEEEEEecCcCcc--cccccc-
Confidence 3579999988887 5555322222 23443 677778889999888766545443221 111211
Q ss_pred CCCcccCCCCCCCcCeEE--EEECC---EEE-EecCCeEEEeecccc
Q 012060 370 NPSMISSSGNNNGENKLI--HCYKN---QVF-VGRGGSLEVWSRVRE 410 (472)
Q Consensus 370 ~~~m~~~~~~~~~~~~~~--~~~~g---~l~-~~~g~~~~v~~~~~~ 410 (472)
..+++.-+ +..+| +|++. +|. +-.+..|++|-+.|.
T Consensus 400 -~vqpGSl~----sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 400 -IVQPGSLE----SEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred -cccCCccc----cccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 00122222 23444 45542 333 335589999999988
No 119
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.79 E-value=70 Score=32.06 Aligned_cols=207 Identities=13% Similarity=0.098 Sum_probs=91.0
Q ss_pred CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 229 TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 229 g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
.+||++... .+.|-.|+......+..+++. -....|..+...+-+..||++... .+.|-.||..++.
T Consensus 47 ~~lyv~~~~---~~~i~~~~~~~~g~l~~~~~~----~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g 113 (330)
T PRK11028 47 RHLYVGVRP---EFRVLSYRIADDGALTFAAES----PLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDG 113 (330)
T ss_pred CEEEEEECC---CCcEEEEEECCCCceEEeeee----cCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCC
Confidence 469995432 356777877531111111110 001122223333456678887532 3568888887553
Q ss_pred eeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE
Q 012060 309 VVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH 388 (472)
Q Consensus 309 ~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~ 388 (472)
.+.+..... .....-|++ ++...+..||+.+-.++....-|++. ...-..... .....+ .|.. -..++
T Consensus 114 ~~~~~~~~~--~~~~~~~~~---~~~p~g~~l~v~~~~~~~v~v~d~~~--~g~l~~~~~--~~~~~~-~g~~--p~~~~ 181 (330)
T PRK11028 114 IPVAPIQII--EGLEGCHSA---NIDPDNRTLWVPCLKEDRIRLFTLSD--DGHLVAQEP--AEVTTV-EGAG--PRHMV 181 (330)
T ss_pred CCCCceeec--cCCCcccEe---EeCCCCCEEEEeeCCCCEEEEEEECC--CCcccccCC--CceecC-CCCC--CceEE
Confidence 222222110 000112321 23445668888776555544334432 111110000 000000 0111 11234
Q ss_pred EEC--CEEEEec--CCeEEEeeccccccccccCCcceeecccccccc-CCCCce---EEEeecCceEEEeeeccceeEEe
Q 012060 389 CYK--NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVED-SGRGAI---SRIDAGGNRLFVSREDVEGIEVW 460 (472)
Q Consensus 389 ~~~--g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~i---~~~~~gg~r~f~~~~~~~~~~vw 460 (472)
... ..||++- .+.|-||.-... .+.+ +.+.. ++..++ ..++.. ..+.-.|.+|||+-+..+.|-||
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~--~~~~-~~~~~---~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDP--HGEI-ECVQT---LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF 255 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCC--CCCE-EEEEE---EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence 333 3788884 488888875311 0011 00000 011111 111111 23456788999997778899999
Q ss_pred ecCCCC
Q 012060 461 ESSNLS 466 (472)
Q Consensus 461 ~~~~~~ 466 (472)
+-..-.
T Consensus 256 ~i~~~~ 261 (330)
T PRK11028 256 SVSEDG 261 (330)
T ss_pred EEeCCC
Confidence 764433
No 120
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=79.20 E-value=19 Score=35.90 Aligned_cols=110 Identities=10% Similarity=0.014 Sum_probs=67.5
Q ss_pred eeee-eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCC
Q 012060 173 SIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKS 250 (472)
Q Consensus 173 ~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~ 250 (472)
++.+ -++.||.--| .-|. +++-.||+.+.+-....+++..=-+ -+++.++++||. .-. ...+-+||+.
T Consensus 49 GL~~~~~g~LyESTG--~yG~---S~l~~~d~~tg~~~~~~~l~~~~Fg-EGit~~~d~l~qLTWk----~~~~f~yd~~ 118 (264)
T PF05096_consen 49 GLEFLDDGTLYESTG--LYGQ---SSLRKVDLETGKVLQSVPLPPRYFG-EGITILGDKLYQLTWK----EGTGFVYDPN 118 (264)
T ss_dssp EEEEEETTEEEEEEC--STTE---EEEEEEETTTSSEEEEEE-TTT--E-EEEEEETTEEEEEESS----SSEEEEEETT
T ss_pred cEEecCCCEEEEeCC--CCCc---EEEEEEECCCCcEEEEEECCccccc-eeEEEECCEEEEEEec----CCeEEEEccc
Confidence 4444 4678888777 3453 5667889999876655555543233 359999999999 533 4577899999
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
|++++.++.- .+.+|-... -+..|+.+ +|+ +.+..+||.+=+
T Consensus 119 tl~~~~~~~y-~~EGWGLt~--------dg~~Li~S---DGS----~~L~~~dP~~f~ 160 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTS--------DGKRLIMS---DGS----SRLYFLDPETFK 160 (264)
T ss_dssp TTEEEEEEE--SSS--EEEE--------CSSCEEEE----SS----SEEEEE-TTT-S
T ss_pred cceEEEEEec-CCcceEEEc--------CCCEEEEE---CCc----cceEEECCcccc
Confidence 9876555433 145665542 24556655 443 579999998765
No 121
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.45 E-value=10 Score=41.49 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=58.7
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCccccee--EEEEeCCeEEEEecCCCCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVT--AIADSPTTVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~--ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
..-.||++|. | +.+.+++.+...|.. |..+--..+. .+...++.|-+|+. ...||.|||.+-+.
T Consensus 144 ~scDly~~gs----g----~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~----~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 144 PSCDLYLVGS----G----SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE----DGVVEFWDPRDKSR 209 (703)
T ss_pred CCccEEEeec----C----cceEEEEcccccccc--ccccccccceeeeecCccceEEeccc----CceEEEecchhhhh
Confidence 3456888775 2 345666777777653 3332223332 13334444444754 35899999999665
Q ss_pred ccccccccC-------CCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 255 SSEIGRQSG-------ASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 255 ~~~~~~~~~-------~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+.-++-... |.-..+.+ +.. .-+|+-+++|-. .++|..||.|+.+
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTa--l~F-~d~gL~~aVGts------~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTA--LKF-RDDGLHVAVGTS------TGSVLIYDLRASK 261 (703)
T ss_pred heeeecccccCCCccccccCcceE--EEe-cCCceeEEeecc------CCcEEEEEcccCC
Confidence 544443111 11111111 111 123666666553 3579999999987
No 122
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=77.70 E-value=16 Score=36.27 Aligned_cols=86 Identities=13% Similarity=-0.018 Sum_probs=49.6
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeE--EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW--IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~--~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
.+|--||+.+..++-+..- |.+..- +.-+.-+||+||.++ .+..||..|++ .+..-.-
T Consensus 205 ssV~Fwdaksf~~lKs~k~----------P~nV~SASL~P~k~~fVaGged~------~~~kfDy~Tge----Ei~~~nk 264 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKM----------PCNVESASLHPKKEFFVAGGEDF------KVYKFDYNTGE----EIGSYNK 264 (334)
T ss_pred ceeEEeccccccceeeccC----------ccccccccccCCCceEEecCcce------EEEEEeccCCc----eeeeccc
Confidence 4788889888553332222 211111 122447889988443 68999999997 3332101
Q ss_pred CCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 320 RSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
...---||+ -=.=+|-+|+.|..||.+.
T Consensus 265 gh~gpVhcV----rFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 265 GHFGPVHCV----RFSPDGELYASGSEDGTIR 292 (334)
T ss_pred CCCCceEEE----EECCCCceeeccCCCceEE
Confidence 122223442 2234899999999998754
No 123
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.61 E-value=29 Score=35.02 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=64.7
Q ss_pred CceeEEEeCCCcccccccccccCCCccccccc------ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEc
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVG------KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETN 314 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m------~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~ 314 (472)
-..+=.||+.+.| |+....- .++|. -++.|||+|-..-..+...++-.||..+.+ |+..
T Consensus 15 C~~lC~yd~~~~q------------W~~~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~ 79 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ------------WSSPGNGISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSL 79 (281)
T ss_pred CCEEEEEECCCCE------------eecCCCCceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCe--eeec
Confidence 3567799999944 9987762 23333 478999988542211124589999999999 9888
Q ss_pred CCCC-CCCCcccccccceeeeecCCeEEEEcc-cCCCcccccccccCCCCcEEeec
Q 012060 315 EPGS-GRSARFGDSFADVDVDVDELTLFKICS-KSGDIAMADLRNLGEDPWVYMED 368 (472)
Q Consensus 315 ~~~~-~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g~~~~~dl~s~e~d~W~~~~~ 368 (472)
..+. -..+.--..+ .......+.+|+-|. .++..+ |...+..+|..+..
T Consensus 80 ~~~~s~~ipgpv~a~--~~~~~d~~~~~~aG~~~~g~~~---l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 80 GGGSSNSIPGPVTAL--TFISNDGSNFWVAGRSANGSTF---LMKYDGSSWSSIGS 130 (281)
T ss_pred CCcccccCCCcEEEE--EeeccCCceEEEeceecCCCce---EEEEcCCceEeccc
Confidence 7631 1112111121 112235667787666 333322 55566778888876
No 124
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=76.23 E-value=34 Score=34.23 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=68.1
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.+|.||.+.|.-|. ++|+.||+.++++..+.. ....-||-|+ +.++++||.+==+++..+.-|..++
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~----l~~~~FgEGi-----t~~~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVP----LPPRYFGEGI-----TILGDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-----TTT--EEEE-----EEETTEEEEEESSSSEEEEEETTTT
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEE----CCccccceeE-----EEECCEEEEEEecCCeEEEEccccc
Confidence 47899998876553 589999999999655544 3557799996 8889999998877765443344443
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeecccc
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVRE 410 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~ 410 (472)
+ .+.. ..-+.+ +=|++.-+.+|+.+-| ..|..+++...
T Consensus 121 ~-----~~~~----~~y~~E-----GWGLt~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 121 K-----KIGT----FPYPGE-----GWGLTSDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp E-----EEEE----EE-SSS-------EEEECSSCEEEE-SSSEEEEE-TTT-
T ss_pred e-----EEEE----EecCCc-----ceEEEcCCCEEEEECCccceEEECCccc
Confidence 3 3333 223333 7789988888888877 77877776544
No 125
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=76.15 E-value=95 Score=31.62 Aligned_cols=188 Identities=18% Similarity=0.155 Sum_probs=106.4
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCcccc---CC-CCcCcccceeEEEEeCC-eEEE-EecCCCCCceeEEEeCC
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD---PS-DPRIYRATVTAIADSPT-TVFS-SLVCPHKENSVLLIDKS 250 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~---~a-~m~~~R~~~~ava~l~g-~IYA-Gg~~~~~l~sVE~YDp~ 250 (472)
-.+...|.|| .+ |.+..|+..+..=.. +. .+...+.++++.-.+++ +|.. +| ..++--||.+
T Consensus 107 PSg~~VAcGG--Ld-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-----D~TCalWDie 174 (343)
T KOG0286|consen 107 PSGNFVACGG--LD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-----DMTCALWDIE 174 (343)
T ss_pred CCCCeEEecC--cC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-----CceEEEEEcc
Confidence 4677788888 33 455667655432111 11 23344556654445554 5665 33 3467789999
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
+.|.++++.- +...-|.+...+.++..||+|+.+ .+..+||.|++.+|=++-.. - +|
T Consensus 175 ~g~~~~~f~G------H~gDV~slsl~p~~~ntFvSg~cD------~~aklWD~R~~~c~qtF~gh----------e-sD 231 (343)
T KOG0286|consen 175 TGQQTQVFHG------HTGDVMSLSLSPSDGNTFVSGGCD------KSAKLWDVRSGQCVQTFEGH----------E-SD 231 (343)
T ss_pred cceEEEEecC------CcccEEEEecCCCCCCeEEecccc------cceeeeeccCcceeEeeccc----------c-cc
Confidence 9664444433 222336666667799999998844 46889999999866555533 1 23
Q ss_pred eeee--ecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEe-cCCeEEEeec
Q 012060 331 VDVD--VDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVG-RGGSLEVWSR 407 (472)
Q Consensus 331 ~~v~--~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~v~~~ 407 (472)
|-+. .-+|.-|+-|..|+...+-|||. |+=..+=+ ..+.+.+- ..+....-|..||+. ....++||.-
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRa---D~~~a~ys-~~~~~~gi-----tSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRA---DQELAVYS-HDSIICGI-----TSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecC---CcEEeeec-cCcccCCc-----eeEEEcccccEEEeeecCCceeEeec
Confidence 3222 22677788898888877768874 33222211 00111111 122222334455663 3478999987
Q ss_pred c
Q 012060 408 V 408 (472)
Q Consensus 408 ~ 408 (472)
.
T Consensus 303 l 303 (343)
T KOG0286|consen 303 L 303 (343)
T ss_pred c
Confidence 5
No 126
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.55 E-value=35 Score=39.28 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=26.0
Q ss_pred ecCCeEEEEEE-eCCC--ccccceEEEEcCCCCeeeeEEc
Q 012060 278 PATGVVLGSAI-AWGA--FGYSGYVRMWDPRSGEVVWETN 314 (472)
Q Consensus 278 ~~~g~Lyv~Gg-~~g~--~~~~~sve~yDp~~~~~vW~~~ 314 (472)
..+++||+++. .++. ....+.|.-||.+|++.+|++-
T Consensus 314 V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 314 VAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 36888888542 1110 0125789999999999999986
No 127
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=75.13 E-value=64 Score=33.01 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=82.5
Q ss_pred EecCCeEEEEEEeCCCccccceEEEEc--CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccc
Q 012060 277 IPATGVVLGSAIAWGAFGYSGYVRMWD--PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMAD 354 (472)
Q Consensus 277 ~~~~g~Lyv~Gg~~g~~~~~~sve~yD--p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~d 354 (472)
.+-++.||++.-.+.. .+.|..|+ +++++ .+..... .......| -+++...+..||+..=.+|.....+
T Consensus 45 ~~~~~~LY~~~e~~~~---~g~v~~~~i~~~~g~--L~~~~~~--~~~g~~p~--~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 45 SPDGRRLYVVNEGSGD---SGGVSSYRIDPDTGT--LTLLNSV--PSGGSSPC--HIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp -TTSSEEEEEETTSST---TTEEEEEEEETTTTE--EEEEEEE--EESSSCEE--EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EeCCCEEEEEEccccC---CCCEEEEEECCCcce--eEEeeee--ccCCCCcE--EEEEecCCCEEEEEEccCCeEEEEE
Confidence 3468899998553211 23455554 54456 5444331 11111222 2334557888887764455544434
Q ss_pred ccccC-----CCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEe--cCCeEEEeeccccccccccCCcceeecc
Q 012060 355 LRNLG-----EDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVG--RGGSLEVWSRVREGRNRSCSEGLFRRNF 425 (472)
Q Consensus 355 l~s~e-----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~--~g~~~~v~~~~~~~~~~~~~~~~~r~~~ 425 (472)
|..-+ .+.+..-... +-..++.+ ..-..+... +.+||+. +.+.|-+|.--.. .+.|++ ...
T Consensus 116 l~~~g~l~~~~~~~~~~g~g--~~~~rq~~--~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~--~~~l~~----~~~ 185 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSG--PNPDRQEG--PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD--TGKLTP----VDS 185 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEE--SSTTTTSS--TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT--S-TEEE----EEE
T ss_pred ccCCcccceeeeecccCCCC--Cccccccc--ccceeEEECCCCCEEEEEecCCCEEEEEEEeCC--CceEEE----eec
Confidence 43322 1111111110 11122211 122233333 3578887 6688888877432 111222 111
Q ss_pred ccccccCCCCceEEEeecCceEEEeeeccceeEEeecCCCCcce
Q 012060 426 VDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVV 469 (472)
Q Consensus 426 ~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~~~~~ 469 (472)
+ +.+.-.|.+=--|.--|.+|||+-+.-+.|.|++-....|..
T Consensus 186 ~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 186 I-KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp E-ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred c-ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 1 111122222223444788999999999999999877555543
No 128
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=74.03 E-value=11 Score=39.61 Aligned_cols=116 Identities=21% Similarity=0.232 Sum_probs=71.2
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC--eEEEEecCCCCCceeEEEeCCCcccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT--TVFSSLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g--~IYAGg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
.+.+.||. + +.|.-+||++.+ .++++......+.++-...+ +|..++ +..++-+||.++.+ |
T Consensus 235 gLiasgsk--D-----nlVKlWDprSg~--cl~tlh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mk---E 298 (464)
T KOG0284|consen 235 GLIASGSK--D-----NLVKLWDPRSGS--CLATLHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMK---E 298 (464)
T ss_pred ceeEEccC--C-----ceeEeecCCCcc--hhhhhhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhH---H
Confidence 46677772 2 378889999885 67777777777654444332 344443 34588999999744 3
Q ss_pred cccccCCCcccccccceeEEecCCeEEEEEEeCCCccc-----cceEEEEcCCCCeeeeEEc
Q 012060 258 IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGY-----SGYVRMWDPRSGEVVWETN 314 (472)
Q Consensus 258 ~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~-----~~sve~yDp~~~~~vW~~~ 314 (472)
+-..++ +...-+...|++++--|+++||.+|+..+ ..-+..--+..+..||++.
T Consensus 299 l~~~r~---Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~ 357 (464)
T KOG0284|consen 299 LFTYRG---HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLA 357 (464)
T ss_pred HHHhhc---chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeee
Confidence 333221 12233667889999999999998887421 1112223345566677766
No 129
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.54 E-value=5.7 Score=25.68 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=22.0
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEE
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWET 313 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~ 313 (472)
.++.+|++.. .+.+..+|+++++++|+.
T Consensus 5 ~~~~v~~~~~-------~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGST-------DGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcC-------CCEEEEEEcccCcEEEEc
Confidence 3568887532 468999999999999985
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=73.34 E-value=78 Score=35.32 Aligned_cols=177 Identities=17% Similarity=0.257 Sum_probs=93.5
Q ss_pred ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE--EcCCCCCCCCcccccccceeeeecCCeEEEEccc
Q 012060 269 MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE--TNEPGSGRSARFGDSFADVDVDVDELTLFKICSK 346 (472)
Q Consensus 269 v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~--~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~ 346 (472)
-|-|-+.|.+.+-+|.-+.| ..++.+||..+++.+=. .... ...+.-.|| +-.+-.+|+.||.
T Consensus 101 nAifDl~wapge~~lVsasG-------DsT~r~Wdvk~s~l~G~~~~~GH---~~SvkS~cf-----~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASG-------DSTIRPWDVKTSRLVGGRLNLGH---TGSVKSECF-----MPTNPAVFCTGGR 165 (720)
T ss_pred ceeEeeccCCCceeEEEccC-------Cceeeeeeeccceeecceeeccc---ccccchhhh-----ccCCCcceeeccC
Confidence 34477778884444433333 13899999999985433 2222 333445676 7889999999999
Q ss_pred CCCcccccccccC----------------CCCcEEeecCCCCcccCCCCCCCcCe---EEEEECCEEEEecC---CeEEE
Q 012060 347 SGDIAMADLRNLG----------------EDPWVYMEDKNPSMISSSGNNNGENK---LIHCYKNQVFVGRG---GSLEV 404 (472)
Q Consensus 347 ~g~~~~~dl~s~e----------------~d~W~~~~~~~~~m~~~~~~~~~~~~---~~~~~~g~l~~~~g---~~~~v 404 (472)
||..-..|+|.-. +.+ +...++.+..........+-.. ++...++-..++.| +.|-|
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV 244 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEE
Confidence 9986555776322 223 3344332221122211112233 55667777777765 57899
Q ss_pred eeccccccccccCCcceeeccccccccCCCCceEEE--eecCceEEEeeeccceeEEeecCCC
Q 012060 405 WSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRI--DAGGNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 405 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~--~~gg~r~f~~~~~~~~~~vw~~~~~ 465 (472)
|.=-...... -.+..-+.-+--+.+-+.| ++.+ .--|.|||++=.| +.|=-|....+
T Consensus 245 WDLRk~~~~~-r~ep~~~~~~~t~skrs~G--~~nL~lDssGt~L~AsCtD-~sIy~ynm~s~ 303 (720)
T KOG0321|consen 245 WDLRKNYTAY-RQEPRGSDKYPTHSKRSVG--QVNLILDSSGTYLFASCTD-NSIYFYNMRSL 303 (720)
T ss_pred Eeeccccccc-ccCCCcccCccCcccceee--eEEEEecCCCCeEEEEecC-CcEEEEecccc
Confidence 9642220000 0000000001111111222 4544 4568999999985 55666765544
No 131
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=73.33 E-value=24 Score=37.29 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=78.0
Q ss_pred eCCeEEE-EecCCCCCceeEEEeCCCcccccccccccC--CCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 227 SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSG--ASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 227 l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~--~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
.+|.|-+ ||-+. .--+||.+| |++.= ++ +..+-....|. -+|...|.|+. .+++..||
T Consensus 313 ~DGSL~~tGGlD~----~~RvWDlRt-------gr~im~L~g-H~k~I~~V~fs-PNGy~lATgs~------Dnt~kVWD 373 (459)
T KOG0272|consen 313 PDGSLAATGGLDS----LGRVWDLRT-------GRCIMFLAG-HIKEILSVAFS-PNGYHLATGSS------DNTCKVWD 373 (459)
T ss_pred CCCceeeccCccc----hhheeeccc-------CcEEEEecc-cccceeeEeEC-CCceEEeecCC------CCcEEEee
Confidence 4677888 66553 334789998 55320 00 00111112222 47778787662 45799999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCc
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGE 383 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~ 383 (472)
.|..+.+-+..+. . .=+.+|-.....|+.-+-+++|... +---+..|.++.. |.+--.. .
T Consensus 374 LR~r~~ly~ipAH---~-----nlVS~Vk~~p~~g~fL~TasyD~t~-----kiWs~~~~~~~ks----LaGHe~k---V 433 (459)
T KOG0272|consen 374 LRMRSELYTIPAH---S-----NLVSQVKYSPQEGYFLVTASYDNTV-----KIWSTRTWSPLKS----LAGHEGK---V 433 (459)
T ss_pred ecccccceecccc---c-----chhhheEecccCCeEEEEcccCcce-----eeecCCCcccchh----hcCCccc---e
Confidence 9998865555544 1 1122222344467777788888542 2223667888886 4433210 1
Q ss_pred CeEEEEECCEEEEecC--CeEEEee
Q 012060 384 NKLIHCYKNQVFVGRG--GSLEVWS 406 (472)
Q Consensus 384 ~~~~~~~~g~l~~~~g--~~~~v~~ 406 (472)
-+.-..+++|.+++.+ -++-+|.
T Consensus 434 ~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 434 ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEeccCCceEEEeccCceeeecc
Confidence 1112345677777765 4566664
No 132
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=71.97 E-value=54 Score=33.90 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=65.5
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeC---CeEEEEcCcCCCCceecceeeeecCCCCc------cccCCCCcCcc
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVW---SDVAAVGSDYSSGIHFYDLSSSRHVASAH------WTDPSDPRIYR 218 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~---~~lYavGG~~~~g~~~l~sve~ydp~t~~------W~~~a~m~~~R 218 (472)
|.|..|||.. ..+.....+-+.++++++++ +.....++ .+| ++-+||.+++. |+.-++ .
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s--sDG-----~Vr~wD~Rs~~e~a~~~~~~~~~----~ 118 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS--SDG-----TVRLWDIRSQAESARISWTQQSG----T 118 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec--cCC-----eEEEEEeecchhhhheeccCCCC----C
Confidence 5699999865 33332222222233444444 23333333 344 56677766553 443331 1
Q ss_pred cceeEEEE-eCCeEEE-EecCCCCCceeEEEeCCCccc-ccccccccCCCcccccccceeEEecCCeEEEEEEeCC
Q 012060 219 ATVTAIAD-SPTTVFS-SLVCPHKENSVLLIDKSTLQI-SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWG 291 (472)
Q Consensus 219 ~~~~ava~-l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~-~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g 291 (472)
.+.+++. .++.|.+ |-.-.+...+|--||-+.+|. +..... -+.=.-+.++.++-+.-|.++|..+|
T Consensus 119 -~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-----SH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 119 -PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-----SHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred -cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-----hccCcceeEEecCCCCCeEEeecccc
Confidence 1111222 2556888 633224578999999999552 211111 11112256677788888888887655
No 133
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.43 E-value=1.5e+02 Score=31.75 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=82.0
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
.+.++++|+. .++|..||.++++++=.+... ...+..++... ++.+++.+.+++.+.. -.
T Consensus 257 ~g~~i~Sgs~------D~tvriWd~~~~~~~~~l~~h--------s~~is~~~f~~-d~~~l~s~s~d~~i~v-----wd 316 (456)
T KOG0266|consen 257 DGNLLVSGSD------DGTVRIWDVRTGECVRKLKGH--------SDGISGLAFSP-DGNLLVSASYDGTIRV-----WD 316 (456)
T ss_pred CCCEEEEecC------CCcEEEEeccCCeEEEeeecc--------CCceEEEEECC-CCCEEEEcCCCccEEE-----EE
Confidence 4477787774 447999999999866555544 22222222344 6666777777765432 22
Q ss_pred CCCcE--EeecCCCCcccCCCCCCCcCeEEEEECC-EEEEecCC-eEEEeeccccccccccCCcceeeccccccccCCCC
Q 012060 360 EDPWV--YMEDKNPSMISSSGNNNGENKLIHCYKN-QVFVGRGG-SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRG 435 (472)
Q Consensus 360 ~d~W~--~~~~~~~~m~~~~~~~~~~~~~~~~~~g-~l~~~~g~-~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 435 (472)
...|. ++.. +... .......+..-.-++ .|+++..+ .+-.|.-- .....+.+.++..+- ..
T Consensus 317 ~~~~~~~~~~~----~~~~-~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~---------~~~~~~~~~~~~~~~-~~ 381 (456)
T KOG0266|consen 317 LETGSKLCLKL----LSGA-ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR---------SGKSVGTYTGHSNLV-RC 381 (456)
T ss_pred CCCCceeeeec----ccCC-CCCCceeEEEECCCCcEEEEecCCCeEEEEEcc---------CCcceeeecccCCcc-ee
Confidence 23344 2332 1111 100001222222333 44444444 77777542 222355555553331 22
Q ss_pred ceEEEeecCceEEEeeeccceeEEeecCCC
Q 012060 436 AISRIDAGGNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 436 ~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~ 465 (472)
...-+...+.+.+++=.+...|.+|..+..
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred EecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 223344789999999999999999998863
No 134
>PTZ00420 coronin; Provisional
Probab=70.93 E-value=1.8e+02 Score=32.44 Aligned_cols=141 Identities=12% Similarity=0.128 Sum_probs=69.1
Q ss_pred CCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee-eeEEcCC
Q 012060 238 PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV-VWETNEP 316 (472)
Q Consensus 238 ~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~-vW~~~~~ 316 (472)
|+....+..|++.+.+++..+. -+.-+.+.+.|.+.++.++|+|+.+ ++|..||.+++.. +-+...+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~------gH~~~V~~lafsP~~~~lLASgS~D------gtIrIWDi~t~~~~~~~i~~p 117 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK------GHTSSILDLQFNPCFSEILASGSED------LTIRVWEIPHNDESVKEIKDP 117 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc------CCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCCCCccccccccc
Confidence 3456678888877644322221 1122335566776666777877744 4699999876531 1111111
Q ss_pred ---CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-EECC
Q 012060 317 ---GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKN 392 (472)
Q Consensus 317 ---~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g 392 (472)
..... ..+..++..-.+..|++.||.++.+..-|++.-+ .+.. ...... -..++ ..+|
T Consensus 118 ~~~L~gH~----~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-----~~~~----i~~~~~-----V~SlswspdG 179 (568)
T PTZ00420 118 QCILKGHK----KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-----RAFQ----INMPKK-----LSSLKWNIKG 179 (568)
T ss_pred eEEeecCC----CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-----EEEE----EecCCc-----EEEEEECCCC
Confidence 00011 1121222233345567788888765543444321 1111 111110 11222 2367
Q ss_pred EEEEec--CCeEEEeecc
Q 012060 393 QVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 393 ~l~~~~--g~~~~v~~~~ 408 (472)
.+++++ ++.|.+|..-
T Consensus 180 ~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 180 NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CEEEEEecCCEEEEEECC
Confidence 777765 4789999864
No 135
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.01 E-value=62 Score=38.12 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=69.1
Q ss_pred eee---CceEEeecc------c-CCCCCccccccccceee--eeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCC
Q 012060 146 AHG---GQISVYDWN------L-SHSVTVRTHLDNITSIR--HVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD 213 (472)
Q Consensus 146 a~G---G~Ve~YDW~------~-~~m~~~R~~~~~v~~v~--~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~ 213 (472)
|+| |.|..||-. . +.+.+.+.+.|.|.++- ...+.+.|-|+ .+|.-. .+|...-+ ++..+
T Consensus 84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa--~~geI~-----iWDlnn~~-tP~~~ 155 (1049)
T KOG0307|consen 84 AGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA--DDGEIL-----IWDLNKPE-TPFTP 155 (1049)
T ss_pred eccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC--CCCcEE-----EeccCCcC-CCCCC
Confidence 666 569999921 1 34445555556544322 34577899998 455321 22222111 11111
Q ss_pred CcC-cccceeEEEEeCC---eEEE-EecCCCCCceeEEEeCCCcccccccccccCC-CcccccccceeEEe-cCCeEEEE
Q 012060 214 PRI-YRATVTAIADSPT---TVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGA-SSKNMAVGKLTWIP-ATGVVLGS 286 (472)
Q Consensus 214 m~~-~R~~~~ava~l~g---~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~-~W~~v~~m~~~~~~-~~g~Lyv~ 286 (472)
-.. +-..+. +-+.|. +|+| |+.++ .+-.||.+.++|+-++..-.++ .|+ .+.|.+ .-..|.++
T Consensus 156 ~~~~~~~eI~-~lsWNrkvqhILAS~s~sg----~~~iWDlr~~~pii~ls~~~~~~~~S-----~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 156 GSQAPPSEIK-CLSWNRKVSHILASGSPSG----RAVIWDLRKKKPIIKLSDTPGRMHCS-----VLAWHPDHATQLLVA 225 (1049)
T ss_pred CCCCCcccce-EeccchhhhHHhhccCCCC----CceeccccCCCcccccccCCCcccee-----eeeeCCCCceeeeee
Confidence 011 123333 344444 5888 54432 3558999998766554432211 121 345665 33344444
Q ss_pred EEeCCCccccceEEEEcCCC
Q 012060 287 AIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~ 306 (472)
.+.+. .-.|..||-|-
T Consensus 226 s~dd~----~PviqlWDlR~ 241 (1049)
T KOG0307|consen 226 SGDDS----APVIQLWDLRF 241 (1049)
T ss_pred cCCCC----CceeEeecccc
Confidence 44333 34799999554
No 136
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.84 E-value=33 Score=40.42 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=66.1
Q ss_pred ccc-C-CCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-----C
Q 012060 156 WNL-S-HSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-----P 228 (472)
Q Consensus 156 W~~-~-~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-----~ 228 (472)
|+. . .++..|. .+.++.--...|.||+.|+ ..++-.+|.++.+- +++++....+ .++++ .
T Consensus 1154 w~~Ls~~~~~~r~-~~~v~dWqQ~~G~Ll~tGd--------~r~IRIWDa~~E~~--~~diP~~s~t--~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARG-TGLVVDWQQQSGHLLVTGD--------VRSIRIWDAHKEQV--VADIPYGSST--LVTALSADLVH 1220 (1387)
T ss_pred eccccccCccCCC-CCeeeehhhhCCeEEecCC--------eeEEEEEeccccee--EeecccCCCc--cceeecccccC
Confidence 665 3 4444444 3333222234688888776 35677777776653 3444433222 24443 2
Q ss_pred CeEEE-EecCCCCCceeEEEeCCCccccccccccc-CCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCC
Q 012060 229 TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQS-GASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 229 g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~-~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~ 306 (472)
|-|.| |+.+| +|-.||.+.--+=+-+..-+ .+.|..|--..+++-++. . .|+|.. .+.|+.||+|.
T Consensus 1221 gn~i~AGfaDG----svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-e-lvSgs~------~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1221 GNIIAAGFADG----SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-E-LVSGSQ------DGDIQLLDLRM 1288 (1387)
T ss_pred CceEEEeecCC----ceEEeecccCCccccceeecccCCcccceeEEeecCCCc-c-eeeecc------CCeEEEEeccc
Confidence 34555 87765 67899988833222222211 244444433333332222 2 234443 45799999999
Q ss_pred C
Q 012060 307 G 307 (472)
Q Consensus 307 ~ 307 (472)
.
T Consensus 1289 ~ 1289 (1387)
T KOG1517|consen 1289 S 1289 (1387)
T ss_pred C
Confidence 4
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=67.75 E-value=62 Score=35.16 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
.|-.||....+|.-...+ -+..+.--.+..+.+-+|+|.=| +.+.|-.||.++.+-+=....
T Consensus 188 ~VtlwDv~g~sp~~~~~~-----~HsAP~~gicfspsne~l~vsVG------~Dkki~~yD~~s~~s~~~l~y------- 249 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASE-----AHSAPCRGICFSPSNEALLVSVG------YDKKINIYDIRSQASTDRLTY------- 249 (673)
T ss_pred eEEEEeccCCCcccchhh-----hccCCcCcceecCCccceEEEec------ccceEEEeecccccccceeee-------
Confidence 566777766332211111 22222234556678999999655 456899999998762211111
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
-+.+.-||-+. +|.+.++|-..|.+.+-|+|+..
T Consensus 250 --~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 250 --SHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred --cCCcceeeecC-CceEEEeecCCceEEEEecccCC
Confidence 12222233344 78888888877887766888665
No 138
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=67.39 E-value=1.4e+02 Score=29.81 Aligned_cols=92 Identities=21% Similarity=0.365 Sum_probs=46.7
Q ss_pred cceEEEEcCCCCeeeeEEcCCCC-CCCCc--ccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGS-GRSAR--FGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS 372 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~-~~~~R--~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~ 372 (472)
.++|+.||-+|.+.|= +++|-. ....| .|-=+ .++++..+- .|||..-.+..--||+.|. +++=|
T Consensus 177 DGtvRvWd~kt~k~v~-~ie~yk~~~~lRp~~g~wi--gala~~edW--lvCGgGp~lslwhLrsse~---t~vfp---- 244 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVS-MIEPYKNPNLLRPDWGKWI--GALAVNEDW--LVCGGGPKLSLWHLRSSES---TCVFP---- 244 (325)
T ss_pred CccEEEEeccccceeE-EeccccChhhcCcccCcee--EEEeccCce--EEecCCCceeEEeccCCCc---eEEEe----
Confidence 5689999999998652 333310 12222 33311 013453333 3444222222224788773 34443
Q ss_pred cccCCCCCCCcCeEEEEECCEEEEec-CCeEEEee
Q 012060 373 MISSSGNNNGENKLIHCYKNQVFVGR-GGSLEVWS 406 (472)
Q Consensus 373 m~~~~~~~~~~~~~~~~~~g~l~~~~-g~~~~v~~ 406 (472)
.+.+ -.-+-.++++|.++| |-+|+-|.
T Consensus 245 ipa~-------v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 245 IPAR-------VHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred cccc-------eeEeeeecceEEEeccccceeeee
Confidence 2222 234557888888888 44555554
No 139
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.78 E-value=11 Score=25.74 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 281 GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 281 g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
|.||+. . ..+++..+|.+|++++|+....
T Consensus 1 ~~v~~~-~------~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVG-T------PDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEE-T------TTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEe-C------CCCEEEEEECCCCCEEEeeeCC
Confidence 456665 2 3568999999999999999876
No 140
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=65.98 E-value=1e+02 Score=31.53 Aligned_cols=75 Identities=25% Similarity=0.362 Sum_probs=41.2
Q ss_pred EEEeCC--eEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccccee-EEecCC-eEEEEEEeCCCccccceE
Q 012060 224 IADSPT--TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLT-WIPATG-VVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 224 va~l~g--~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~-~~~~~g-~Lyv~Gg~~g~~~~~~sv 299 (472)
++-.++ ++|+|+ +.+++-.||..++|+. .++. + -+|.+.. |....+ -+.+.|. ...++
T Consensus 78 v~WsddgskVf~g~----~Dk~~k~wDL~S~Q~~-~v~~------H-d~pvkt~~wv~~~~~~cl~TGS------WDKTl 139 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGG----CDKQAKLWDLASGQVS-QVAA------H-DAPVKTCHWVPGMNYQCLVTGS------WDKTL 139 (347)
T ss_pred EEEccCCceEEeec----cCCceEEEEccCCCee-eeee------c-ccceeEEEEecCCCcceeEecc------cccce
Confidence 454443 577753 3468889999997621 1111 1 1233333 332222 2334443 35689
Q ss_pred EEEcCCCCeeeeEEcCC
Q 012060 300 RMWDPRSGEVVWETNEP 316 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~ 316 (472)
..||+|+-+.|=+..=|
T Consensus 140 KfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 140 KFWDTRSSNPVATLQLP 156 (347)
T ss_pred eecccCCCCeeeeeecc
Confidence 99999999855444433
No 141
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.40 E-value=1.5e+02 Score=29.03 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=75.7
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCC--CCcccc-CCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEe
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTD-PSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLID 248 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~-~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YD 248 (472)
++-.+++++|.--|. + | .+.+-.+|.. .-.|+. +++. +..--+++.+++.+|+ ....+ -.-.||
T Consensus 50 GL~~~~g~i~esTG~-y-g---~S~ir~~~L~~gq~~~s~~l~~~---~~FgEGit~~gd~~y~LTw~eg----vaf~~d 117 (262)
T COG3823 50 GLEYLDGHILESTGL-Y-G---FSKIRVSDLTTGQEIFSEKLAPD---TVFGEGITKLGDYFYQLTWKEG----VAFKYD 117 (262)
T ss_pred ceeeeCCEEEEeccc-c-c---cceeEEEeccCceEEEEeecCCc---cccccceeeccceEEEEEeccc----eeEEEC
Confidence 455688888887773 2 2 3445566666 334554 3332 3222248899999999 54433 455899
Q ss_pred CCCccccccccccc--CCCcccccccceeEEe-------------------------------------cCCeEEEEEEe
Q 012060 249 KSTLQISSEIGRQS--GASSKNMAVGKLTWIP-------------------------------------ATGVVLGSAIA 289 (472)
Q Consensus 249 p~t~~~~~~~~~~~--~~~W~~v~~m~~~~~~-------------------------------------~~g~Lyv~Gg~ 289 (472)
+.|.+ ++|+.+ |++|-.....+.-++. .+|.|||==-
T Consensus 118 ~~t~~---~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw- 193 (262)
T COG3823 118 ADTLE---ELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVW- 193 (262)
T ss_pred hHHhh---hhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeee-
Confidence 99965 777766 6778766542211110 3455555100
Q ss_pred CCCccccceEEEEcCCCCeee-eEEcCC
Q 012060 290 WGAFGYSGYVRMWDPRSGEVV-WETNEP 316 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~v-W~~~~~ 316 (472)
....|-+-||.+++|| |--..+
T Consensus 194 -----~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 194 -----QTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred -----eecceEEEcCCCCcEEEEEEccC
Confidence 2457889999999988 877766
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=62.48 E-value=35 Score=35.14 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=67.3
Q ss_pred eCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 227 SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 227 l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
.+-..|| |++. +++..|.-....|..-++-+. ..-+.++|.+..++||++. . ....|+|||.|
T Consensus 218 ~~~~~~a~gsY~----q~~giy~~~~~~pl~llggh~------gGvThL~~~edGn~lfsGa-----R-k~dkIl~WDiR 281 (406)
T KOG2919|consen 218 MDSKTLAVGSYG----QRVGIYNDDGRRPLQLLGGHG------GGVTHLQWCEDGNKLFSGA-----R-KDDKILCWDIR 281 (406)
T ss_pred CCCcceeeeccc----ceeeeEecCCCCceeeecccC------CCeeeEEeccCcCeecccc-----c-CCCeEEEEeeh
Confidence 4455777 6553 456667666655555444322 2236788888899998742 2 35689999998
Q ss_pred CC-eeeeEEcCCCC-CCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 306 SG-EVVWETNEPGS-GRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 306 ~~-~~vW~~~~~~~-~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
.- .+||+.-..-. ...+-..| .+ -.+.+-+-|+.+|....=|+..+.
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~FD------ld-~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRILFD------LD-PKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred hccchhhhhhhhccCccceEEEe------cC-CCCceeeccCCCccEEEEecCCCC
Confidence 65 67787765421 12222222 12 256677777788876665776644
No 143
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=62.18 E-value=47 Score=36.18 Aligned_cols=182 Identities=17% Similarity=0.140 Sum_probs=98.9
Q ss_pred CcEEEeee---CceEEee---ccc-CCCCCcccccc--ccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCcccc
Q 012060 141 GSLWIAHG---GQISVYD---WNL-SHSVTVRTHLD--NITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 141 g~l~va~G---G~Ve~YD---W~~-~~m~~~R~~~~--~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~ 210 (472)
+.++ |.| |.|..+| |.. +.|...-.|.. -++++.+ .+++..+.-| +++.--+=..--+.--.+.|+.
T Consensus 329 g~~i-Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 329 GKLI-AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred cchh-hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhcC
Confidence 5554 555 5577766 666 55555544444 4555554 4566666555 4432111111112222456777
Q ss_pred CCCCcCcccceeEEEEe-CCe-EEEEecCC--CCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEE
Q 012060 211 PSDPRIYRATVTAIADS-PTT-VFSSLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGS 286 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l-~g~-IYAGg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~ 286 (472)
+..|---. - +|+. ++. |++|-.-. ...-..-.||+.|.+.|..|+- . ...--+..|++--|.|+|+
T Consensus 406 L~t~~~~t---d-c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~---~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 406 LPTPFPGT---D-CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---S---TASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred CCccCCCC---c-cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC---C---CceEEEEeecchhhheeee
Confidence 76553222 1 3443 334 55453322 1234677999999999999988 3 2223566788888999997
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
.|. |.. =-.|||..-. .-+. ..++.+|.-+. +.....=|++--+....+
T Consensus 476 sgd-G~~-----~vyYdp~~S~----RGak~cv~k~~rkk~~------~e~~~~~~ii~phalpmf 525 (641)
T KOG0772|consen 476 SGD-GTA-----HVYYDPNESI----RGAKLCVVKPPRKKHI------DEDLSEDVIINPHALPMF 525 (641)
T ss_pred cCC-Cce-----EEEECccccc----cchhheeecCccccch------hhhcCcceEEccccchhc
Confidence 774 331 2358887664 1111 22466777663 444445555665555444
No 144
>PLN03219 uncharacterized protein; Provisional
Probab=61.56 E-value=15 Score=31.55 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCC-------CCCcEEEEECC----eEEEEeHHHhhccCCCCccccccCCC------CCCCCCEEEcCCh
Q 012060 1 MDNVNSDHTPDRQ-------NGDRVKLNVGG----KLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDP 63 (472)
Q Consensus 1 ~~~~~~~~~~~~~-------~~~~V~LnVGG----~~F~t~r~tLa~~~pssyf~amf~~~------~~~~~~vfiDrdp 63 (472)
|.+.|..++|.++ ...-+.+.||. ++|.+....|.. |.|..|.... ....+.+-|-.|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~h----P~F~~LL~~AeEEfGf~~~~G~L~IPCd~ 95 (108)
T PLN03219 20 MRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNH----PLFREFLNRAEEECGFHHSMGGLTIPCRE 95 (108)
T ss_pred HhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCC----hHHHHHHHHHHHHhCCCCCCCCEEEeCCH
Confidence 4466776666653 33456778885 899999888864 5999987631 1235788999999
Q ss_pred hhHHHHhhcc
Q 012060 64 DVFSVLLSLL 73 (472)
Q Consensus 64 ~~F~~IL~fl 73 (472)
+.|+.||.+-
T Consensus 96 ~~F~~ll~~~ 105 (108)
T PLN03219 96 ESFLHLITSH 105 (108)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 145
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=61.56 E-value=1.6e+02 Score=32.49 Aligned_cols=173 Identities=17% Similarity=0.298 Sum_probs=88.8
Q ss_pred CCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC
Q 012060 239 HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 239 ~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
++-++|-+||..+.+.+.-++ + .. +...-...++-+.++|.. .++|-.||+++++++=+....
T Consensus 308 s~D~tVkVW~v~n~~~l~l~~-----~--h~--~~V~~v~~~~~~lvsgs~------d~~v~VW~~~~~~cl~sl~gH-- 370 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGACLNLLR-----G--HT--GPVNCVQLDEPLLVSGSY------DGTVKVWDPRTGKCLKSLSGH-- 370 (537)
T ss_pred cCCceEEEEeccCcceEEEec-----c--cc--ccEEEEEecCCEEEEEec------CceEEEEEhhhceeeeeecCC--
Confidence 456788899888733111111 0 11 112223345666666653 447999999999955444432
Q ss_pred CCCCcccccccceeeeecCC-eEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEe
Q 012060 319 GRSARFGDSFADVDVDVDEL-TLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVG 397 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~-~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~ 397 (472)
+.|.-. +.+ ++ ....-|+.|+....-|++ ++|.++-- +....+ .-..+.+. ++.+++
T Consensus 371 --~~~V~s------l~~-~~~~~~~Sgs~D~~IkvWdl~----~~~~c~~t----l~~h~~----~v~~l~~~-~~~Lvs 428 (537)
T KOG0274|consen 371 --TGRVYS------LIV-DSENRLLSGSLDTTIKVWDLR----TKRKCIHT----LQGHTS----LVSSLLLR-DNFLVS 428 (537)
T ss_pred --cceEEE------EEe-cCcceEEeeeeccceEeecCC----chhhhhhh----hcCCcc----cccccccc-cceeEe
Confidence 111111 122 22 333345555332221222 22322221 233332 12344444 444555
Q ss_pred cC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 398 RG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 398 ~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
.. +.|.+|..-+- . . ++- +.. ...+.|+.+.+| +-.++..-++..+++|.-+.
T Consensus 429 ~~aD~~Ik~WD~~~~----~----~-~~~-~~~---~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEG----E----C-LRT-LEG---RHVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccccccEEEeecccC----c----e-eee-ecc---CCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 44 77999954322 1 1 220 111 144678888888 89999999999999997543
No 146
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=61.08 E-value=22 Score=38.56 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=67.9
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
+.|.. +|...|+|-. .+.|+.||..+.+ ....|. ++..++|.+-.=++.+...|+.++..-.-
T Consensus 223 v~ws~-~G~~LavG~~------~g~v~iwD~~~~k----~~~~~~------~~h~~rvg~laW~~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 223 VKWSP-DGSHLAVGTS------DGTVQIWDVKEQK----KTRTLR------GSHASRVGSLAWNSSVLSSGSRDGKILNH 285 (484)
T ss_pred EEECC-CCCEEEEeec------CCeEEEEehhhcc----cccccc------CCcCceeEEEeccCceEEEecCCCcEEEE
Confidence 34443 5666677653 4579999998887 333331 11335555677789999999999887777
Q ss_pred cccccC-CCCcEEeecCCCCcc-cCCCCCCCcCeEEE-EECCEEEEecC--CeEEEeec
Q 012060 354 DLRNLG-EDPWVYMEDKNPSMI-SSSGNNNGENKLIH-CYKNQVFVGRG--GSLEVWSR 407 (472)
Q Consensus 354 dl~s~e-~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~-~~~g~l~~~~g--~~~~v~~~ 407 (472)
|+|..+ ... + |. ..+ --||+. +.+++.+++|| ..+-||..
T Consensus 286 dvR~~~~~~~-~--------~~~H~q-----eVCgLkws~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 286 DVRISQHVVS-T--------LQGHRQ-----EVCGLKWSPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred EEecchhhhh-h--------hhcccc-----eeeeeEECCCCCeeccCCCccceEeccC
Confidence 888777 211 1 22 333 255665 66778888888 67888987
No 147
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=60.75 E-value=2.2e+02 Score=29.76 Aligned_cols=90 Identities=19% Similarity=0.142 Sum_probs=54.9
Q ss_pred CceeEEEeCCCcccccccccccCCCccccccccee---EEecCCeEEEEEEe--CCCcc-ccceEEEEcCCCCeeeeEEc
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLT---WIPATGVVLGSAIA--WGAFG-YSGYVRMWDPRSGEVVWETN 314 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~---~~~~~g~Lyv~Gg~--~g~~~-~~~sve~yDp~~~~~vW~~~ 314 (472)
.++|=++|..+++.+..|.. .+.+ ..+-+..||++..+ .+..| ..+.|+.||+.|.+++.+..
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~-----------G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDG-----------GFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred CceEEEEECCCCEEEEEEEc-----------cCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 37899999999665443333 1111 22356789996552 22222 35699999999999888888
Q ss_pred CCCCCCCCccccc--ccceeeeecCCeEEEEc
Q 012060 315 EPGSGRSARFGDS--FADVDVDVDELTLFKIC 344 (472)
Q Consensus 315 ~~~~~~~~R~~~~--~~d~~v~~~~~~iy~vG 344 (472)
-| ..+|+..+ -..++++..+..||+.-
T Consensus 95 ~p---~~p~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 95 LP---EGPRFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred cC---CCchhhccCccceEEECCCCCEEEEec
Confidence 66 44452211 11234567677788654
No 148
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=57.48 E-value=1.2e+02 Score=32.06 Aligned_cols=136 Identities=16% Similarity=0.296 Sum_probs=65.8
Q ss_pred CceeEEEeCCCccccccc-ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEI-GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~-~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
..+|-.||+.|..|.--. |+ ..|-.. +.|. -+|+..|+|. ..++|.+|||.+++.+ -.+. .
T Consensus 136 D~TvR~WD~~TeTp~~t~KgH---~~WVlc----vaws-PDgk~iASG~------~dg~I~lwdpktg~~~---g~~l-~ 197 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPLFTCKGH---KNWVLC----VAWS-PDGKKIASGS------KDGSIRLWDPKTGQQI---GRAL-R 197 (480)
T ss_pred CceEEeeccCCCCcceeecCC---ccEEEE----EEEC-CCcchhhccc------cCCeEEEecCCCCCcc---cccc-c
Confidence 568999999993321110 00 223221 2233 3777777765 3568999999999832 1111 0
Q ss_pred CCCcccccc--cceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEEC--CEEE
Q 012060 320 RSARFGDSF--ADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYK--NQVF 395 (472)
Q Consensus 320 ~~~R~~~~~--~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~--g~l~ 395 (472)
..+..-.++ -=+ =-+-..+.++-+++||+...=| +..-+++-- |.... .-+-+...| |.||
T Consensus 198 gH~K~It~Lawep~-hl~p~~r~las~skDg~vrIWd-----~~~~~~~~~----lsgHT-----~~VTCvrwGG~gliy 262 (480)
T KOG0271|consen 198 GHKKWITALAWEPL-HLVPPCRRLASSSKDGSVRIWD-----TKLGTCVRT----LSGHT-----ASVTCVRWGGEGLIY 262 (480)
T ss_pred CcccceeEEeeccc-ccCCCccceecccCCCCEEEEE-----ccCceEEEE----eccCc-----cceEEEEEcCCceEE
Confidence 111000000 000 0122456777788887643211 111122221 21211 223333444 4667
Q ss_pred Ee-cCCeEEEeeccc
Q 012060 396 VG-RGGSLEVWSRVR 409 (472)
Q Consensus 396 ~~-~g~~~~v~~~~~ 409 (472)
.. ....|-||-..+
T Consensus 263 SgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALD 277 (480)
T ss_pred ecCCCceEEEEEccc
Confidence 65 458899998765
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=57.31 E-value=1.2e+02 Score=32.47 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=67.4
Q ss_pred CCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC---CCeeeeEEcCC
Q 012060 240 KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR---SGEVVWETNEP 316 (472)
Q Consensus 240 ~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~---~~~~vW~~~~~ 316 (472)
.-++|-.||..+.+|.+-|-.+.++ --++.|++....+...|++ .++|-++|-| .-..-|.....
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~------Vq~l~wh~~~p~~LLsGs~------D~~V~l~D~R~~~~s~~~wk~~g~ 331 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKK------VQTLEWHPYEPSVLLSGSY------DGTVALKDCRDPSNSGKEWKFDGE 331 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCc------eeEEEecCCCceEEEeccc------cceEEeeeccCccccCceEEeccc
Confidence 4579999999996655544432111 1335677777777787764 4568888877 22223766644
Q ss_pred CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeec
Q 012060 317 GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMED 368 (472)
Q Consensus 317 ~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~ 368 (472)
-++-.++-+ .-..|.+|-.+|.+...|+|+.+.=.|+--+.
T Consensus 332 ---VEkv~w~~~--------se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH 372 (463)
T KOG0270|consen 332 ---VEKVAWDPH--------SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH 372 (463)
T ss_pred ---eEEEEecCC--------CceeEEEecCCceEEeeecCCCCCceeEEEec
Confidence 222223322 33566677688888888999988666887775
No 150
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=57.02 E-value=1.3e+02 Score=30.06 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=113.0
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
+....|++| +. -+--||..++.=.+++.---.+..+.+|++- +|+ +|.|++++ +|-.||.+..+-
T Consensus 51 dk~~LAaa~--~q------hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg----t~kIWdlR~~~~- 117 (311)
T KOG0315|consen 51 DKKDLAAAG--NQ------HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG----TVKIWDLRSLSC- 117 (311)
T ss_pred Ccchhhhcc--CC------eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc----eEEEEeccCccc-
Confidence 455566666 32 3556777776533444444455566556653 444 77777664 678999988431
Q ss_pred cccccccCCCcccccccceeEE-ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWI-PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~-~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
.| ..+..+|...-.+ +...-|+++ - -++.|+.||.+++.+-=+.++. -...+.-.+++
T Consensus 118 ---qR----~~~~~spVn~vvlhpnQteLis~-d------qsg~irvWDl~~~~c~~~liPe-------~~~~i~sl~v~ 176 (311)
T KOG0315|consen 118 ---QR----NYQHNSPVNTVVLHPNQTELISG-D------QSGNIRVWDLGENSCTHELIPE-------DDTSIQSLTVM 176 (311)
T ss_pred ---ch----hccCCCCcceEEecCCcceEEee-c------CCCcEEEEEccCCccccccCCC-------CCcceeeEEEc
Confidence 11 1233344333332 455566553 1 2567999999999622222222 12344444455
Q ss_pred ecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE---ECCEEEEe--cCCeEEEeeccc
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC---YKNQVFVG--RGGSLEVWSRVR 409 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~---~~g~l~~~--~g~~~~v~~~~~ 409 (472)
-.+.++-++- .-|.... -+.+..+.=+.+-|.-+- ..+ .+..+-| =+++..+. ....+.||+-..
T Consensus 177 ~dgsml~a~n-nkG~cyv--W~l~~~~~~s~l~P~~k~--~ah-----~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 177 PDGSMLAAAN-NKGNCYV--WRLLNHQTASELEPVHKF--QAH-----NGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CCCcEEEEec-CCccEEE--EEccCCCccccceEhhhe--ecc-----cceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 5444433222 2243322 122222112333332221 222 2333332 24555555 347888999865
Q ss_pred c-ccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 410 E-GRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 410 ~-~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+ +-+..++..- |=+| =|.|+.-|--||-.-+| .-+..|+-+
T Consensus 247 ~~kle~~l~gh~-rWvW-----------dc~FS~dg~YlvTassd-~~~rlW~~~ 288 (311)
T KOG0315|consen 247 FFKLELVLTGHQ-RWVW-----------DCAFSADGEYLVTASSD-HTARLWDLS 288 (311)
T ss_pred ceeeEEEeecCC-ceEE-----------eeeeccCccEEEecCCC-Cceeecccc
Confidence 5 2222222111 2111 24556666566666566 677888743
No 151
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=55.88 E-value=2.3e+02 Score=28.61 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=50.7
Q ss_pred cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 272 GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 272 m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
.+.-|-+++..|.++ . -.++|..||.++++ +.+... + --...+.|+--+- +...|+.|.+|-...
T Consensus 151 t~a~Wg~l~~~ii~G-h------e~G~is~~da~~g~---~~v~s~--~--~h~~~Ind~q~s~-d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 151 TSALWGPLGETIIAG-H------EDGSISIYDARTGK---ELVDSD--E--EHSSKINDLQFSR-DRTYFITGSKDTTAK 215 (327)
T ss_pred eeeeecccCCEEEEe-c------CCCcEEEEEcccCc---eeeech--h--hhccccccccccC-CcceEEecccCccce
Confidence 334466677777553 3 24579999999985 233321 0 0022444444455 667788888887666
Q ss_pred cccccccC-CCCcEEeecCCC
Q 012060 352 MADLRNLG-EDPWVYMEDKNP 371 (472)
Q Consensus 352 ~~dl~s~e-~d~W~~~~~~~~ 371 (472)
.-|+++++ .-+.++-.|.|.
T Consensus 216 l~D~~tl~v~Kty~te~PvN~ 236 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNT 236 (327)
T ss_pred eeeccceeeEEEeeecccccc
Confidence 55888888 333555555333
No 152
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.27 E-value=3e+02 Score=29.66 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=73.9
Q ss_pred ccccccceee-eeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC--eEEEEecCCCCCc
Q 012060 166 THLDNITSIR-HVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT--TVFSSLVCPHKEN 242 (472)
Q Consensus 166 ~~~~~v~~v~-~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g--~IYAGg~~~~~l~ 242 (472)
.++..+..+| .-|++.+|.||. +- -+-.+|+.+.+ ++......|-.+.++|.-.+ .+|++..+ .
T Consensus 200 ~h~keil~~avS~Dgkylatgg~--d~-----~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt~~lys~s~D----r 266 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGR--DR-----HVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGTSELYSASAD----R 266 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCC--Cc-----eEEEecCcccc--hhhcccccccceeeeeeecCccceeeeecC----C
Confidence 3443333444 368888888883 22 23445555443 33334445555555666655 48885333 3
Q ss_pred eeEEEeCCCcccccc-cccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 243 SVLLIDKSTLQISSE-IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 243 sVE~YDp~t~~~~~~-~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
+|-.|+...+.++-. .|+| +.=..+.++.+ ..++ -+|| ..+++++|+.-... -=...++
T Consensus 267 svkvw~~~~~s~vetlyGHq--d~v~~IdaL~r-----eR~v-tVGg------rDrT~rlwKi~ees-qlifrg~----- 326 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGHQ--DGVLGIDALSR-----ERCV-TVGG------RDRTVRLWKIPEES-QLIFRGG----- 326 (479)
T ss_pred ceEEEehhHhHHHHHHhCCc--cceeeechhcc-----cceE-Eecc------ccceeEEEeccccc-eeeeeCC-----
Confidence 677777766332211 1222 11111222222 2222 2343 34589999863332 0112222
Q ss_pred CcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
.-+-+| |+..+.-=|+.|+.+|...
T Consensus 327 ~~sidc-----v~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 327 EGSIDC-----VAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred CCCeee-----EEEecccceeeccCCceEE
Confidence 112344 3555888899999998766
No 153
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=54.10 E-value=1.2e+02 Score=33.25 Aligned_cols=111 Identities=17% Similarity=0.294 Sum_probs=64.7
Q ss_pred CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEEC--CEEEEecC--CeEEEeecccccc
Q 012060 337 ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYK--NQVFVGRG--GSLEVWSRVREGR 412 (472)
Q Consensus 337 ~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~--g~l~~~~g--~~~~v~~~~~~~~ 412 (472)
+.-.|..|++||.+..=|++.- .-|=..+.+ +++...| ..+-.|.++ |.+++.+. |+|+.|.-.-+
T Consensus 280 ~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~--k~~~g~R-----v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~-- 349 (641)
T KOG0772|consen 280 NKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKT--KPAGGKR-----VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR-- 349 (641)
T ss_pred cccceEEecCCCcEEEEecCCc-hhheeEEee--ccCCCcc-----cCceeeecCCCcchhhhcccCCceeeeecCCc--
Confidence 6678889998887442222211 112223333 2344555 355555553 67777754 99999996433
Q ss_pred ccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCCC
Q 012060 413 NRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 413 ~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~ 465 (472)
+ -|-++-=+-.+-.|--|+.|+|- |++| ++|..-+..-||+--.+
T Consensus 350 ----~---v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 350 ----T---VRPVMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ----c---cccceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeecccc
Confidence 1 12222212223344479998885 5554 79999999999985443
No 154
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=52.06 E-value=45 Score=35.86 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=86.7
Q ss_pred cceeEEecCCeEEEEEEeCCCccccceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCc
Q 012060 272 GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDI 350 (472)
Q Consensus 272 m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~ 350 (472)
..++|.+..+.|+.+||.++ .|.+||... ++++=+.... + .++-|+.-.- .+.=|.-+|+|..+
T Consensus 218 sai~~fp~~~hLlLS~gmD~------~vklW~vy~~~~~lrtf~gH---~-----k~Vrd~~~s~-~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDG------LVKLWNVYDDRRCLRTFKGH---R-----KPVRDASFNN-CGTSFLSASFDRFL 282 (503)
T ss_pred chhhhccceeeEEEecCCCc------eEEEEEEecCcceehhhhcc---h-----hhhhhhhccc-cCCeeeeeecceee
Confidence 34667888999999988544 588888776 4544444433 1 1111222233 45556677777543
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccccccccCCcceeeccccc
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDR 428 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~ 428 (472)
- |=.+|+ -.++.. |..... ..-.+.+.=+-.+|++|+ +.|-.|.-- ..+.+.
T Consensus 283 K---lwDtET--G~~~~~----f~~~~~---~~cvkf~pd~~n~fl~G~sd~ki~~wDiR---s~kvvq----------- 336 (503)
T KOG0282|consen 283 K---LWDTET--GQVLSR----FHLDKV---PTCVKFHPDNQNIFLVGGSDKKIRQWDIR---SGKVVQ----------- 336 (503)
T ss_pred e---eecccc--ceEEEE----EecCCC---ceeeecCCCCCcEEEEecCCCcEEEEecc---chHHHH-----------
Confidence 3 223444 345554 333221 122333333458999988 666666431 111111
Q ss_pred cccCCCCceEEEee-cCceEEEeeeccceeEEeecCC
Q 012060 429 VEDSGRGAISRIDA-GGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 429 ~~~~~~~~i~~~~~-gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
+=|-.-|.|-+|.| =++|=|||-.|.-.|-|||-.-
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~ 373 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI 373 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence 12224567877776 5678899999999999999543
No 155
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=51.11 E-value=43 Score=35.34 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=80.1
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc--CcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCC
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR--IYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKST 251 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~--~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t 251 (472)
+-+..+..++|.| .+|- .+..++|..|.-..+..-. .-| .+ |. +-++.-|++..+ .++++.||-..
T Consensus 144 m~ws~~g~wmiSg--D~gG----~iKyWqpnmnnVk~~~ahh~eaIR-dl-af-SpnDskF~t~Sd---Dg~ikiWdf~~ 211 (464)
T KOG0284|consen 144 MKWSHNGTWMISG--DKGG----MIKYWQPNMNNVKIIQAHHAEAIR-DL-AF-SPNDSKFLTCSD---DGTIKIWDFRM 211 (464)
T ss_pred EEEccCCCEEEEc--CCCc----eEEecccchhhhHHhhHhhhhhhh-ee-cc-CCCCceeEEecC---CCeEEEEeccC
Confidence 3457788888888 3331 3445566555433221100 112 11 12 236667875433 45889999887
Q ss_pred cccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccce
Q 012060 252 LQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADV 331 (472)
Q Consensus 252 ~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~ 331 (472)
-++-+.| +|-.|-. -...|++..++|..+ | ..+-|-+||||+++++=+.-.. -.++.-+
T Consensus 212 ~kee~vL---~GHgwdV---ksvdWHP~kgLiasg-s------kDnlVKlWDprSg~cl~tlh~H--------KntVl~~ 270 (464)
T KOG0284|consen 212 PKEERVL---RGHGWDV---KSVDWHPTKGLIASG-S------KDNLVKLWDPRSGSCLATLHGH--------KNTVLAV 270 (464)
T ss_pred Cchhhee---ccCCCCc---ceeccCCccceeEEc-c------CCceeEeecCCCcchhhhhhhc--------cceEEEE
Confidence 3311111 3556654 346788888888654 3 2347999999999944333222 1111000
Q ss_pred eeeecCCeEEEEcccCCCcccccccccC
Q 012060 332 DVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 332 ~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
.=-.++-.-+.+++|-.+.+.|+|++.
T Consensus 271 -~f~~n~N~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 271 -KFNPNGNWLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred -EEcCCCCeeEEccCCceEEEEehhHhH
Confidence 001233444566777666666777443
No 156
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.72 E-value=3e+02 Score=28.29 Aligned_cols=162 Identities=17% Similarity=0.104 Sum_probs=87.6
Q ss_pred eeEEEEeCCeEEEEecCC------------------CCCceeEEEeCCCcccccccccccCCCcccccccceeEEe----
Q 012060 221 VTAIADSPTTVFSSLVCP------------------HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP---- 278 (472)
Q Consensus 221 ~~ava~l~g~IYAGg~~~------------------~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~---- 278 (472)
..||...++.||-||+-- ..-+-|-.||.++.+ .+ =.|+..---+..|..
T Consensus 39 YNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~-------Vr-LLWkesih~~~~WaGEVSd 110 (339)
T PF09910_consen 39 YNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDS-------VR-LLWKESIHDKTKWAGEVSD 110 (339)
T ss_pred ceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCe-------EE-EEEecccCCccccccchhh
Confidence 347888999999976420 013457788887733 11 236655555677773
Q ss_pred -----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 279 -----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 279 -----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
.+..||.+=. ||.. .--|...|.+++++.|-...|. --+ .-+.+-..|-+ ++...+..
T Consensus 111 IlYdP~~D~LLlAR~-DGh~--nLGvy~ldr~~g~~~~L~~~ps-------~KG-----~~~~D~a~F~i--~~~~~g~~ 173 (339)
T PF09910_consen 111 ILYDPYEDRLLLARA-DGHA--NLGVYSLDRRTGKAEKLSSNPS-------LKG-----TLVHDYACFGI--NNFHKGVS 173 (339)
T ss_pred eeeCCCcCEEEEEec-CCcc--eeeeEEEcccCCceeeccCCCC-------cCc-----eEeeeeEEEec--cccccCCc
Confidence 6777777654 3432 2257788999998556555551 222 13444455544 33222211
Q ss_pred cccccC--CCCcEEeecCCCCcccCCCC-CCCcCeEEEEECCEEEEecCCeEEEeecc
Q 012060 354 DLRNLG--EDPWVYMEDKNPSMISSSGN-NNGENKLIHCYKNQVFVGRGGSLEVWSRV 408 (472)
Q Consensus 354 dl~s~e--~d~W~~~~~~~~~m~~~~~~-~~~~~~~~~~~~g~l~~~~g~~~~v~~~~ 408 (472)
-+.++. +++|+. ..-+.+....+.+ .-...-.++..-+++|+.-+|.+=|.++.
T Consensus 174 ~i~~~Dli~~~~~~-e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGGi~vgnP~ 230 (339)
T PF09910_consen 174 GIHCLDLISGKWVI-ESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGGIFVGNPY 230 (339)
T ss_pred eEEEEEccCCeEEE-EecccccCCCCCceEeeccccEEEEeeeEEEEEeccEEEeCCC
Confidence 133333 677833 1111111011000 00012234566688999988889999997
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=50.59 E-value=41 Score=35.43 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=37.0
Q ss_pred CCceeEEEeCCCcccccccccccCCCcccccccceeE-EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 240 KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW-IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 240 ~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~-~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
+.|.|-.||..|.+-+-.|++ +.|-... ...+|-+++..- -...|+.||||++++|++-.+.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~h---------pd~i~S~sfn~dGs~l~Ttc------kDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDH---------PDMVYSMSFNRDGSLLCTTC------KDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred CCceEEEEeccCCceeeecCC---------CCeEEEEEeccCCceeeeec------ccceeEEEcCCCCcEeeecccc
Confidence 467899999999552222222 0111111 123444444322 2458999999999999998655
No 158
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=50.56 E-value=3.4e+02 Score=28.97 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=59.0
Q ss_pred cccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC--ccccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCc
Q 012060 167 HLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA--HWTDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKEN 242 (472)
Q Consensus 167 ~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~--~W~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~ 242 (472)
+...+.++++-...-|++.|. .++ ++..+|...+ .=..+..+...... ++... +.+.+ |+. ..
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s-~D~-----tiriwd~~~~~~~~~~l~gH~~~v~~---~~f~p~g~~i~Sgs~----D~ 268 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGS-DDK-----TLRIWDLKDDGRNLKTLKGHSTYVTS---VAFSPDGNLLVSGSD----DG 268 (456)
T ss_pred cccceeeeEECCCCcEEEEec-CCc-----eEEEeeccCCCeEEEEecCCCCceEE---EEecCCCCEEEEecC----CC
Confidence 333444566544443666662 222 3344444222 11223344444433 44332 35777 543 45
Q ss_pred eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+|-.||..+.+++.-+.- .-.++.-.....++.+++++.. .+.|..||..++.
T Consensus 269 tvriWd~~~~~~~~~l~~-------hs~~is~~~f~~d~~~l~s~s~------d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKG-------HSDGISGLAFSPDGNLLVSASY------DGTIRVWDLETGS 321 (456)
T ss_pred cEEEEeccCCeEEEeeec-------cCCceEEEEECCCCCEEEEcCC------CccEEEEECCCCc
Confidence 788999998332211111 0112333344567777777643 4579999999998
No 159
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=50.52 E-value=1.9e+02 Score=29.21 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=65.1
Q ss_pred eEEecCCeEEEEEEeCCCccccceEEEEcCC-CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 275 TWIPATGVVLGSAIAWGAFGYSGYVRMWDPR-SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 275 ~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~-~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
.|.+..|.|+|++| ..+.|+.|+.. .+. |+.+.......+|.--.+ +---.+++.+.+.+|....
T Consensus 21 awhp~~g~ilAscg------~Dk~vriw~~~~~~s--~~ck~vld~~hkrsVRsv----Awsp~g~~La~aSFD~t~~-- 86 (312)
T KOG0645|consen 21 AWHPGKGVILASCG------TDKAVRIWSTSSGDS--WTCKTVLDDGHKRSVRSV----AWSPHGRYLASASFDATVV-- 86 (312)
T ss_pred EeccCCceEEEeec------CCceEEEEecCCCCc--EEEEEeccccchheeeee----eecCCCcEEEEeeccceEE--
Confidence 34444467888776 24589999988 678 999866444455554443 2233556566666665432
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEEC--CEEE--EecCCeEEEeecc
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYK--NQVF--VGRGGSLEVWSRV 408 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~--g~l~--~~~g~~~~v~~~~ 408 (472)
+-.-+.+.|.+++- +-+. + ..+|.++.. |.+. ++|+.+|=+|-..
T Consensus 87 -Iw~k~~~efecv~~----lEGH-E----nEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 87 -IWKKEDGEFECVAT----LEGH-E----NEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred -EeecCCCceeEEee----eecc-c----cceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 23334677888875 2222 3 455555442 3333 4578888888654
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=48.91 E-value=20 Score=37.42 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=67.4
Q ss_pred ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCe--EEEEcccCCCc
Q 012060 273 KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELT--LFKICSKSGDI 350 (472)
Q Consensus 273 ~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~--iy~vGg~~g~~ 350 (472)
-++|.+...-++++++.+ ++|..||.|++. -.+. |.+++.+ +||-|..-+++ +.+-||-+|.+
T Consensus 262 DLqWSptE~~vfaScS~D------gsIrIWDiRs~~----~~~~--~~~kAh~---sDVNVISWnr~~~lLasG~DdGt~ 326 (440)
T KOG0302|consen 262 DLQWSPTEDGVFASCSCD------GSIRIWDIRSGP----KKAA--VSTKAHN---SDVNVISWNRREPLLASGGDDGTL 326 (440)
T ss_pred hhccCCccCceEEeeecC------ceEEEEEecCCC----ccce--eEeeccC---CceeeEEccCCcceeeecCCCceE
Confidence 366878888888987744 479999999995 3333 2333333 37777665554 56889999998
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeecc
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~ 408 (472)
..-|||..... ..|+. -..-+. .....--.-+..-++++.| .-|-.|.=-
T Consensus 327 ~iwDLR~~~~~--~pVA~----fk~Hk~--pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 327 SIWDLRQFKSG--QPVAT----FKYHKA--PITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEEEhhhccCC--Cccee----EEeccC--CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 88899876632 34443 111111 0011111223456666666 457778743
No 161
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=48.75 E-value=34 Score=28.99 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=44.7
Q ss_pred CCCcEEEEECC--eEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEEcCChhhHHHHhhcc
Q 012060 14 NGDRVKLNVGG--KLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFIDRDPDVFSVLLSLL 73 (472)
Q Consensus 14 ~~~~V~LnVGG--~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfiDrdp~~F~~IL~fl 73 (472)
+..-+.+.||. ++|..+...|.. |.|.+|+... -..++.+.|..|...|++||.++
T Consensus 37 p~G~~~VyVG~~~~Rfvvp~~~L~h----p~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 37 PKGHFAVYVGEERRRFVVPVSYLNH----PLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCCeEEEEeCccceEEEechHHcCc----hhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence 46678889987 789999988864 5999987532 24577899999999999999875
No 162
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=48.66 E-value=87 Score=32.60 Aligned_cols=130 Identities=17% Similarity=0.198 Sum_probs=66.6
Q ss_pred eEEeecccCCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC---cccceeEEEEe
Q 012060 151 ISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI---YRATVTAIADS 227 (472)
Q Consensus 151 Ve~YDW~~~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~---~R~~~~ava~l 227 (472)
|..+||...+|-..-.+|+-++--..+++...+... .+ .+.-.+|..+-+ .++-|++ .|+.+. +.-.
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcS--kD-----rsiaVWdm~sps--~it~rrVLvGHrAaVN-vVdf 328 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCS--KD-----RSIAVWDMASPT--DITLRRVLVGHRAAVN-VVDF 328 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEec--CC-----ceeEEEeccCch--HHHHHHHHhhhhhhee-eecc
Confidence 888889884444444555443322223344333332 11 122233333222 2333333 345544 4555
Q ss_pred CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 228 PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 228 ~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
+++..++-. ...++-+||..|.+-+.-|+- -+ --...+...+.+.|+|.. .++|+.||.+.+
T Consensus 329 d~kyIVsAS---gDRTikvW~~st~efvRtl~g-----Hk----RGIAClQYr~rlvVSGSS------DntIRlwdi~~G 390 (499)
T KOG0281|consen 329 DDKYIVSAS---GDRTIKVWSTSTCEFVRTLNG-----HK----RGIACLQYRDRLVVSGSS------DNTIRLWDIECG 390 (499)
T ss_pred ccceEEEec---CCceEEEEeccceeeehhhhc-----cc----ccceehhccCeEEEecCC------CceEEEEecccc
Confidence 666444311 145888999999442222211 00 011234588999888652 458999999999
Q ss_pred e
Q 012060 308 E 308 (472)
Q Consensus 308 ~ 308 (472)
.
T Consensus 391 ~ 391 (499)
T KOG0281|consen 391 A 391 (499)
T ss_pred H
Confidence 7
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=48.27 E-value=4.5e+02 Score=29.65 Aligned_cols=203 Identities=18% Similarity=0.215 Sum_probs=93.6
Q ss_pred eccCCcEEEeee---CceEEee-----ccc--CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 137 SSDDGSLWIAHG---GQISVYD-----WNL--SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 137 ~~~~g~l~va~G---G~Ve~YD-----W~~--~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++....++ +++ |.|..|| .++ ..+...-.|++++..+..+.+..-+|-. .|. .+.-++|..+.
T Consensus 60 ~~n~eHiL-avadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa---sGD---sT~r~Wdvk~s 132 (720)
T KOG0321|consen 60 APNKEHIL-AVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA---SGD---STIRPWDVKTS 132 (720)
T ss_pred CCCccceE-EEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc---cCC---ceeeeeeeccc
Confidence 33333444 444 4577777 332 2334445666666666666665555543 222 23344444444
Q ss_pred ccccCC----CCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcc--ccccccccc-----------------
Q 012060 207 HWTDPS----DPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQ--ISSEIGRQS----------------- 262 (472)
Q Consensus 207 ~W~~~a----~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~--~~~~~~~~~----------------- 262 (472)
.-.-.. .-...+ +. |..-.+-.+|+ ||.++ .+..||..-+. ...|...+.
T Consensus 133 ~l~G~~~~~GH~~Svk-S~-cf~~~n~~vF~tGgRDg----~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVK-SE-CFMPTNPAVFCTGGRDG----EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeecceeecccccccc-hh-hhccCCCcceeeccCCC----cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 322211 000111 22 24456667899 87765 34455555432 111111111
Q ss_pred CCCccccccccee----EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC----CCCcccccccceeee
Q 012060 263 GASSKNMAVGKLT----WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG----RSARFGDSFADVDVD 334 (472)
Q Consensus 263 ~~~W~~v~~m~~~----~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~----~~~R~~~~~~d~~v~ 334 (472)
...|..-+..-.. .+..+....|..|- . .+.|..||.|.+...-.--....- ..+|+ +++.-....
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga--~---D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs-~G~~nL~lD 280 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGA--A---DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS-VGQVNLILD 280 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccC--C---CcceEEEeecccccccccCCCcccCccCcccce-eeeEEEEec
Confidence 1223332221111 12244555554331 1 347999999999744333222111 12222 222122233
Q ss_pred ecCCeEEEEcccCCCcccccccccC
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
.-+.+|||-|- |+...+-+++++.
T Consensus 281 ssGt~L~AsCt-D~sIy~ynm~s~s 304 (720)
T KOG0321|consen 281 SSGTYLFASCT-DNSIYFYNMRSLS 304 (720)
T ss_pred CCCCeEEEEec-CCcEEEEeccccC
Confidence 44678999997 6666655666554
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=52 Score=38.71 Aligned_cols=146 Identities=17% Similarity=0.327 Sum_probs=80.9
Q ss_pred cceEEEEcCCC---CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC
Q 012060 296 SGYVRMWDPRS---GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS 372 (472)
Q Consensus 296 ~~sve~yDp~~---~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~ 372 (472)
.+.|.+|||.. +. -.+.+.......|+-.+ ++.-...+-+-+-|+.+|+...=||+..++ .+.+ +
T Consensus 89 dG~I~ly~p~~~~~~~----~~~~la~~~~h~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~t----P~~~---~ 156 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANA----SEEVLATKSKHTGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPET----PFTP---G 156 (1049)
T ss_pred CCceEEecchhhccCc----chHHHhhhcccCCceee-eeccccCCceeeccCCCCcEEEeccCCcCC----CCCC---C
Confidence 45799999987 44 34444334444455332 444556677888899998877667777663 1111 0
Q ss_pred cccCCCCCCCcCeEEEEECC---EEEEecC--CeEEEeeccccccccccCCcceeec--cccccccCCCCceEEEee---
Q 012060 373 MISSSGNNNGENKLIHCYKN---QVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRN--FVDRVEDSGRGAISRIDA--- 442 (472)
Q Consensus 373 m~~~~~~~~~~~~~~~~~~g---~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~i~~~~~--- 442 (472)
..... ..+++...+. +||++++ |-+-+|.= |+| .+.=-+.+.+.....++.
T Consensus 157 -~~~~~----~eI~~lsWNrkvqhILAS~s~sg~~~iWDl--------------r~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 157 -SQAPP----SEIKCLSWNRKVSHILASGSPSGRAVIWDL--------------RKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred -CCCCc----ccceEeccchhhhHHhhccCCCCCceeccc--------------cCCCcccccccCCCccceeeeeeCCC
Confidence 11111 4777777775 5788877 44666642 331 000000001111222221
Q ss_pred cCceEEEeeecc--ceeEEee-----------cCCCCcceEeC
Q 012060 443 GGNRLFVSREDV--EGIEVWE-----------SSNLSGVVCVL 472 (472)
Q Consensus 443 gg~r~f~~~~~~--~~~~vw~-----------~~~~~~~~~~~ 472 (472)
+-.||.++=+|. .+|..|+ +.+-.|+++++
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLS 260 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeec
Confidence 223566666665 5799999 66777888763
No 165
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=47.69 E-value=50 Score=34.40 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=57.2
Q ss_pred EEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 231 VFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 231 IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
|+| |+-|+ .+-.||..+.+ .|--.=...+-.++.|++ ...||++. ..+.|+.||.|+++.
T Consensus 300 L~A~G~vdG----~i~iyD~a~~~-------~R~~c~he~~V~~l~w~~-t~~l~t~c-------~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 300 LAACGSVDG----TIAIYDLAAST-------LRHICEHEDGVTKLKWLN-TDYLLTAC-------ANGKVRQWDARTGQL 360 (399)
T ss_pred hhhcccccc----eEEEEecccch-------hheeccCCCceEEEEEcC-cchheeec-------cCceEEeeeccccce
Confidence 666 54443 56688888833 111111222347788887 66777652 256899999999998
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
.-+.... ..++.|++..... ++.+-++-+
T Consensus 361 ~~~y~GH--------~~~Il~f~ls~~~-~~vvT~s~D 389 (399)
T KOG0296|consen 361 KFTYTGH--------QMGILDFALSPQK-RLVVTVSDD 389 (399)
T ss_pred EEEEecC--------chheeEEEEcCCC-cEEEEecCC
Confidence 8888877 6777888888744 444444433
No 166
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=47.11 E-value=1.8e+02 Score=30.44 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=92.3
Q ss_pred eeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCC-cCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCccc
Q 012060 176 HVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDP-RIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 176 ~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m-~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
..++.+.+.|. .+ +++-.+|..+.+ ++.-+ ...-+-++ +.+.+|++... ++..|+-+||...-
T Consensus 244 qyd~rviisGS--SD-----sTvrvWDv~tge--~l~tlihHceaVLh-lrf~ng~mvtc----SkDrsiaVWdm~sp-- 307 (499)
T KOG0281|consen 244 QYDERVIVSGS--SD-----STVRVWDVNTGE--PLNTLIHHCEAVLH-LRFSNGYMVTC----SKDRSIAVWDMASP-- 307 (499)
T ss_pred eccceEEEecC--CC-----ceEEEEeccCCc--hhhHHhhhcceeEE-EEEeCCEEEEe----cCCceeEEEeccCc--
Confidence 46778777776 22 466777765543 11111 11112222 55566665542 23568889998871
Q ss_pred ccccccccCCCccccccccee--------EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccc
Q 012060 255 SSEIGRQSGASSKNMAVGKLT--------WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGD 326 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~--------~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~ 326 (472)
+.++-|..- ....+.++.|++. | ..++..||..|.+.|-+..+ .+|.-+
T Consensus 308 ------------s~it~rrVLvGHrAaVNvVdfd~kyIVsAS--g----DRTikvW~~st~efvRtl~g-----HkRGIA 364 (499)
T KOG0281|consen 308 ------------TDITLRRVLVGHRAAVNVVDFDDKYIVSAS--G----DRTIKVWSTSTCEFVRTLNG-----HKRGIA 364 (499)
T ss_pred ------------hHHHHHHHHhhhhhheeeeccccceEEEec--C----CceEEEEeccceeeehhhhc-----ccccce
Confidence 122222211 1236666555432 2 35899999999995555543 456555
Q ss_pred cccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEE
Q 012060 327 SFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEV 404 (472)
Q Consensus 327 ~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v 404 (472)
| .-+++++.+-|..|.... --+...-.++. |..+-+ --..+.-.+++=.|+|+ |.|.|
T Consensus 365 C------lQYr~rlvVSGSSDntIR-----lwdi~~G~cLR-----vLeGHE----eLvRciRFd~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 365 C------LQYRDRLVVSGSSDNTIR-----LWDIECGACLR-----VLEGHE----ELVRCIRFDNKRIVSGAYDGKIKV 424 (499)
T ss_pred e------hhccCeEEEecCCCceEE-----EEeccccHHHH-----HHhchH----HhhhheeecCceeeeccccceEEE
Confidence 5 678999887777664322 11111112222 222221 12222335555566666 88999
Q ss_pred eecc
Q 012060 405 WSRV 408 (472)
Q Consensus 405 ~~~~ 408 (472)
|+=+
T Consensus 425 Wdl~ 428 (499)
T KOG0281|consen 425 WDLQ 428 (499)
T ss_pred Eecc
Confidence 9865
No 167
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=46.97 E-value=24 Score=31.43 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=50.9
Q ss_pred EEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCC-EEEcCChhhHHHHhhccccCcccCCCCC------------
Q 012060 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNP-IFIDRDPDVFSVLLSLLRSNRLPSTASR------------ 84 (472)
Q Consensus 18 V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~-vfiDrdp~~F~~IL~flrtg~l~~~~~~------------ 84 (472)
...-.+|.+|.+...+--+ |-+++.|...-..-+-+ ....+...+|..++.|+..-+-.++++.
T Consensus 5 ~l~s~dge~F~vd~~iAer---SiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D 81 (158)
T COG5201 5 ELESIDGEIFRVDENIAER---SILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSD 81 (158)
T ss_pred EEEecCCcEEEehHHHHHH---HHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCcc
Confidence 3445688999876443332 33444443211111122 2356788999999999865332222110
Q ss_pred -----------cchHHHHhhhhhcCcchHHhhhc
Q 012060 85 -----------FSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 85 -----------~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
...-++.-+|+|+.+.+|++.||
T Consensus 82 ~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gC 115 (158)
T COG5201 82 FWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGC 115 (158)
T ss_pred HHHHHHHHhhHHHHHHHHHhhccccchHHHHHHH
Confidence 11234555899999999999998
No 168
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=46.17 E-value=4.1e+02 Score=28.65 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=52.8
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC---C--------CCcE
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG---E--------DPWV 364 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e---~--------d~W~ 364 (472)
..++.+||...+...=+..-| +.-.++ ++.-.+.++| ||+.+|..+..++...- . -.=+
T Consensus 197 D~t~k~wdlS~g~LLlti~fp------~si~av---~lDpae~~~y-iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFP------SSIKAV---ALDPAERVVY-IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred CceEEEEEeccceeeEEEecC------CcceeE---EEcccccEEE-ecCCcceEEeeehhcCCcccccccccccccccc
Confidence 459999999999855444444 333442 2334344555 77766654432222111 0 0012
Q ss_pred EeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeecc
Q 012060 365 YMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 365 ~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~ 408 (472)
.+.. ..+.+ ++....+-..+.+|-|.++|+ |-|-||.-.
T Consensus 267 ~~~~----~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 267 QINV----LVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeee----ecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 2221 22222 111233444577899999988 889999875
No 169
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=45.84 E-value=1.9e+02 Score=30.89 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=95.8
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
.+---||.+|.+ |+=.|+|-. ..+. -.....+|-|.+.||. .+.-+.||.|+++++=..-+. ..
T Consensus 283 ~tWRlWD~~tk~---ElL~QEGHs-~~v~---~iaf~~DGSL~~tGGl------D~~~RvWDlRtgr~im~L~gH---~k 346 (459)
T KOG0272|consen 283 STWRLWDLETKS---ELLLQEGHS-KGVF---SIAFQPDGSLAATGGL------DSLGRVWDLRTGRCIMFLAGH---IK 346 (459)
T ss_pred cchhhcccccch---hhHhhcccc-cccc---eeEecCCCceeeccCc------cchhheeecccCcEEEEeccc---cc
Confidence 355568888833 444554321 0111 1122368888888884 346889999999966555544 22
Q ss_pred CcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-- 399 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-- 399 (472)
. +-+|+-+. ||..-+.||.|+....=|||.... .+. |+.-. ..++.++-.=-.|+-.++.+
T Consensus 347 ~-----I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~---ly~------ipAH~--nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 347 E-----ILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSE---LYT------IPAHS--NLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred c-----eeeEeECC-CceEEeecCCCCcEEEeeeccccc---cee------ccccc--chhhheEecccCCeEEEEcccC
Confidence 2 22333355 899999999887654447764431 111 11111 11222222222344444444
Q ss_pred CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCce-EEEeeeccceeEEee
Q 012060 400 GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNR-LFVSREDVEGIEVWE 461 (472)
Q Consensus 400 ~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r-~f~~~~~~~~~~vw~ 461 (472)
..+-+||...|+ .-+. +.|+ -++|-+..+-.|+ .++|-.--+.|-.|-
T Consensus 410 ~t~kiWs~~~~~----~~ks-----LaGH-----e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWS----PLKS-----LAGH-----EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcc----cchh-----hcCC-----ccceEEEEeccCCceEEEeccCceeeecc
Confidence 679999998772 2222 3444 4577777777776 444555556666663
No 170
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.00 E-value=1.1e+02 Score=32.45 Aligned_cols=148 Identities=19% Similarity=0.246 Sum_probs=82.6
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
..|.+-++.|.++|- ...+.+||..|+..+ -.+ ... -+.++.-++=.- ++.=|++|+.+....+-
T Consensus 275 i~wSPDdryLlaCg~-------~e~~~lwDv~tgd~~----~~y--~~~-~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGF-------DEVLSLWDVDTGDLR----HLY--PSG-LGFSVSSCAWCP-DGFRFVTGSPDRTIIMW 339 (519)
T ss_pred EEECCCCCeEEecCc-------hHheeeccCCcchhh----hhc--ccC-cCCCcceeEEcc-CCceeEecCCCCcEEEe
Confidence 345566667766642 345899999999722 221 111 111111111122 55558889888766555
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccC
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDS 432 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 432 (472)
|+.--+.+.|..+.. ++- ...++.-=|..++.+.- ..+-.++. --.+++..-+
T Consensus 340 dlDgn~~~~W~gvr~-------~~v----~dlait~Dgk~vl~v~~d~~i~l~~~---------------e~~~dr~lis 393 (519)
T KOG0293|consen 340 DLDGNILGNWEGVRD-------PKV----HDLAITYDGKYVLLVTVDKKIRLYNR---------------EARVDRGLIS 393 (519)
T ss_pred cCCcchhhccccccc-------cee----EEEEEcCCCcEEEEEecccceeeech---------------hhhhhhcccc
Confidence 776555667877764 221 22333333345555542 22333332 1222332335
Q ss_pred CCCceEEEeecCc-eEEEeeeccceeEEeec
Q 012060 433 GRGAISRIDAGGN-RLFVSREDVEGIEVWES 462 (472)
Q Consensus 433 ~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~ 462 (472)
+.-+|+++.+-+| |+|+.-=.-|.+-.|+-
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 6668999999776 78888888899999973
No 171
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.79 E-value=82 Score=35.23 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=53.9
Q ss_pred eeeeecCCCCc-cccCCCCcCcccceeEEEE--eCCeEEE-EecCCCCCceeEEEeCCCc--ccccccccccCCCccccc
Q 012060 197 LSSSRHVASAH-WTDPSDPRIYRATVTAIAD--SPTTVFS-SLVCPHKENSVLLIDKSTL--QISSEIGRQSGASSKNMA 270 (472)
Q Consensus 197 sve~ydp~t~~-W~~~a~m~~~R~~~~ava~--l~g~IYA-Gg~~~~~l~sVE~YDp~t~--~~~~~~~~~~~~~W~~v~ 270 (472)
+|..+++.... |. +.-+++.+-++.++|. -+..++| ||-+. -|-.||.++. +.+...+.-. .-+.+.
T Consensus 96 TVK~W~~~~~~~~c-~stir~H~DYVkcla~~ak~~~lvaSgGLD~----~IflWDin~~~~~l~~s~n~~t--~~sl~s 168 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFC-MSTIRTHKDYVKCLAYIAKNNELVASGGLDR----KIFLWDINTGTATLVASFNNVT--VNSLGS 168 (735)
T ss_pred eEEEeecccCcchh-HhhhhcccchheeeeecccCceeEEecCCCc----cEEEEEccCcchhhhhhccccc--cccCCC
Confidence 56777777664 43 3345555666655554 4667899 66543 4667887763 1111111100 011110
Q ss_pred ccceeEE--e--cCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 271 VGKLTWI--P--ATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 271 ~m~~~~~--~--~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
.-+...+ . -+|.++|+|| ..+.+++||||+++
T Consensus 169 G~k~siYSLA~N~t~t~ivsGg------tek~lr~wDprt~~ 204 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGG------TEKDLRLWDPRTCK 204 (735)
T ss_pred CCccceeeeecCCcceEEEecC------cccceEEecccccc
Confidence 1112222 2 3455888876 35679999999998
No 172
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.74 E-value=1.5e+02 Score=29.99 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=33.4
Q ss_pred eEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 282 VVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 282 ~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
.+.++|.| .+-+-+-||.++++.|+..-- -|..-. +.+.++. .++|=++|-+.+.+.+
T Consensus 24 T~v~igSH------s~~~~avd~~sG~~~We~ilg-----~RiE~s-----a~vvgdf-VV~GCy~g~lYfl~~~ 81 (354)
T KOG4649|consen 24 TLVVIGSH------SGIVIAVDPQSGNLIWEAILG-----VRIECS-----AIVVGDF-VVLGCYSGGLYFLCVK 81 (354)
T ss_pred eEEEEecC------CceEEEecCCCCcEEeehhhC-----ceeeee-----eEEECCE-EEEEEccCcEEEEEec
Confidence 33446654 446889999999999998743 233222 2344555 3345555555554433
No 173
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=43.64 E-value=1.3e+02 Score=32.10 Aligned_cols=157 Identities=22% Similarity=0.317 Sum_probs=92.1
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccce---eeeecCCeEEEEcccCCCc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADV---DVDVDELTLFKICSKSGDI 350 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~---~v~~~~~~iy~vGg~~g~~ 350 (472)
..|.+++..||++-+.+ +.+-.||.|+++ ..+ ......|. +++ +.--.++.|.|.|+.|+.+
T Consensus 233 V~~h~~h~~lF~sv~dd------~~L~iwD~R~~~-----~~~---~~~~~ah~-~~vn~~~fnp~~~~ilAT~S~D~tV 297 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDD------GKLMIWDTRSNT-----SKP---SHSVKAHS-AEVNCVAFNPFNEFILATGSADKTV 297 (422)
T ss_pred hhccccchhhheeecCC------CeEEEEEcCCCC-----CCC---cccccccC-CceeEEEeCCCCCceEEeccCCCcE
Confidence 34566788899876643 468899999632 222 11111211 111 1245689999999999988
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccc-------cccccCCcce
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREG-------RNRSCSEGLF 421 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~-------~~~~~~~~~~ 421 (472)
..-|||.+.. ++=. +...+ .++..+--.=+..-|+++.| +-|-||.-..+. .+.+-.|-+|
T Consensus 298 ~LwDlRnL~~----~lh~----~e~H~--dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 298 ALWDLRNLNK----PLHT----FEGHE--DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred EEeechhccc----Ccee----ccCCC--cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 8779998764 1110 22222 11122222235667778776 789999765441 1112334344
Q ss_pred -eeccccccccCCCCceEEEeecCce--EEEeeeccceeEEeecC
Q 012060 422 -RRNFVDRVEDSGRGAISRIDAGGNR--LFVSREDVEGIEVWESS 463 (472)
Q Consensus 422 -r~~~~~~~~~~~~~~i~~~~~gg~r--~f~~~~~~~~~~vw~~~ 463 (472)
-+ --.++|++|+.==++ +-++=.|.+...||+-+
T Consensus 368 ~Hg--------GH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 368 IHG--------GHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred Eec--------CcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 11 134578888876654 66778888999999965
No 174
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=43.16 E-value=55 Score=34.16 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=55.5
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeE-E-ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW-I-PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~-~-~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
.++|-+.|..|.+++.+|..- ..+.... . +-...+|+++. .+.|-.+|+.+++++-+....
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~--------~~~h~~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~~v~~i~~G-- 77 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG--------GAPHAGLKFSPDGRYLYVANR-------DGTVSVIDLATGKVVATIKVG-- 77 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S--------TTEEEEEE-TT-SSEEEEEET-------TSEEEEEETTSSSEEEEEE-S--
T ss_pred CCEEEEEECCCCeEEEEEcCC--------CCceeEEEecCCCCEEEEEcC-------CCeEEEEECCcccEEEEEecC--
Confidence 468889999998877766541 0111111 1 23457898742 347999999999988877654
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
..+|. ++++-.+..||+.+-..+.....|.+++|
T Consensus 78 -~~~~~------i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 78 -GNPRG------IAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp -SEEEE------EEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred -CCcce------EEEcCCCCEEEEEecCCCceeEecccccc
Confidence 33333 33566677777666666666655666666
No 175
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=41.94 E-value=1e+02 Score=34.85 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=67.1
Q ss_pred cccCCCCCccc---cccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEE
Q 012060 156 WNLSHSVTVRT---HLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVF 232 (472)
Q Consensus 156 W~~~~m~~~R~---~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IY 232 (472)
|...++.+.|. +++-+.++.+-.|.-|+..|. .. .+|--+|..+-.= +.-+.-.+..+.|++......|
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS--sD----~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS--SD----RTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCC--CC----ceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCce
Confidence 87733434343 445555556667778888872 11 2333444333321 1111111223334666554444
Q ss_pred E-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 233 S-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 233 A-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
- +|.. ..-|-.||..+.+++.++-.+.+ .+.++ ....+|.+.|+|| -.++|.+||...-.
T Consensus 592 LaSg~e---d~~I~iWDl~~~~~v~~l~~Ht~----ti~Sl---sFS~dg~vLasgg------~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 592 LASGDE---DGLIKIWDLANGSLVKQLKGHTG----TIYSL---SFSRDGNVLASGG------ADNSVRLWDLTKVI 652 (707)
T ss_pred Eeeccc---CCcEEEEEcCCCcchhhhhcccC----ceeEE---EEecCCCEEEecC------CCCeEEEEEchhhc
Confidence 4 3322 34688999999555544433221 11221 1246888889877 24689999866554
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=41.74 E-value=1.6e+02 Score=29.48 Aligned_cols=125 Identities=16% Similarity=0.240 Sum_probs=70.0
Q ss_pred CCccccccccee----------EE-ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 264 ASSKNMAVGKLT----------WI-PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 264 ~~W~~v~~m~~~----------~~-~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
..|....||... |+ +-.|-|+-+|| .+-+.+||.++++.--+.+.. .-.-|++
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-------D~~~y~~dlE~G~i~r~~rGH-----tDYvH~v---- 162 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-------DGVIYQVDLEDGRIQREYRGH-----TDYVHSV---- 162 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecC-------CeEEEEEEecCCEEEEEEcCC-----cceeeee----
Confidence 347777776652 33 24555555555 246899999999833333322 2234553
Q ss_pred ee-ecCCeEEEEcccCCCcccccccccCCCCcE-Eeec-CCCCcccCCCCCCCcCeEEEEECCEEEEecCCeEEEeeccc
Q 012060 333 VD-VDELTLFKICSKSGDIAMADLRNLGEDPWV-YMED-KNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVR 409 (472)
Q Consensus 333 v~-~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~-~~~~-~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~~ 409 (472)
|. .-++.|+ -|+.||....=|+++-. =+ .+.+ +++....+--| ..=-.++.-.+|+.+.+|-.+.+|.=.-
T Consensus 163 v~R~~~~qil-sG~EDGtvRvWd~kt~k---~v~~ie~yk~~~~lRp~~g--~wigala~~edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 163 VGRNANGQIL-SGAEDGTVRVWDTKTQK---HVSMIEPYKNPNLLRPDWG--KWIGALAVNEDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred eecccCccee-ecCCCccEEEEeccccc---eeEEeccccChhhcCcccC--ceeEEEeccCceEEecCCCceeEEeccC
Confidence 33 3456666 68888875543444322 22 2333 22222222211 0113467777899999999999998653
Q ss_pred c
Q 012060 410 E 410 (472)
Q Consensus 410 ~ 410 (472)
.
T Consensus 237 s 237 (325)
T KOG0649|consen 237 S 237 (325)
T ss_pred C
Confidence 3
No 177
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=41.66 E-value=1.4e+02 Score=28.46 Aligned_cols=144 Identities=11% Similarity=0.077 Sum_probs=71.0
Q ss_pred eeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCC-----cCcccceeEEEEeCCeEEEEecCC---CCC-
Q 012060 173 SIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDP-----RIYRATVTAIADSPTTVFSSLVCP---HKE- 241 (472)
Q Consensus 173 ~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m-----~~~R~~~~ava~l~g~IYAGg~~~---~~l- 241 (472)
++++. ++.+|+... .+. -.+|+.+.+++.+... ...|..-. +..-+|.||++-... ...
T Consensus 44 G~~~~~~~g~l~v~~~---~~~------~~~d~~~g~~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 44 GMAFDRPDGRLYVADS---GGI------AVVDPDTGKVTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp EEEEECTTSEEEEEET---TCE------EEEETTTTEEEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGG
T ss_pred eEEEEccCCEEEEEEc---Cce------EEEecCCCcEEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCcccccc
Confidence 44444 678887765 332 3448888888877665 22333322 334467899942221 112
Q ss_pred -ceeEEEeCCCcccccccccccCCCcccc-cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC-C
Q 012060 242 -NSVLLIDKSTLQISSEIGRQSGASSKNM-AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG-S 318 (472)
Q Consensus 242 -~sVE~YDp~t~~~~~~~~~~~~~~W~~v-~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~-~ 318 (472)
..+-++++. .+. ..+ +..+ .|--+.+.+-+..||++-. ..+.|..||+..+...++..... .
T Consensus 114 ~g~v~~~~~~-~~~-~~~-------~~~~~~pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~ 178 (246)
T PF08450_consen 114 PGSVYRIDPD-GKV-TVV-------ADGLGFPNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFID 178 (246)
T ss_dssp SEEEEEEETT-SEE-EEE-------EEEESSEEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE
T ss_pred ccceEEECCC-CeE-EEE-------ecCcccccceEECCcchheeeccc------ccceeEEEeccccccceeeeeeEEE
Confidence 578899998 330 000 1000 1112334445667888532 24579999986543212211110 0
Q ss_pred -CCCCcccccccceeeeecCCeEEEEcc
Q 012060 319 -GRSARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 319 -~~~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
......-+++ +..-+|.||+..-
T Consensus 179 ~~~~~g~pDG~----~vD~~G~l~va~~ 202 (246)
T PF08450_consen 179 FPGGPGYPDGL----AVDSDGNLWVADW 202 (246)
T ss_dssp -SSSSCEEEEE----EEBTTS-EEEEEE
T ss_pred cCCCCcCCCcc----eEcCCCCEEEEEc
Confidence 0111234554 4445889998743
No 178
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=40.82 E-value=2.9e+02 Score=29.21 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=44.8
Q ss_pred CcCcccceeEEEEeCC-eEEE-EecCCCCCceeEEEeCCCcccc----cccccccCCCcccccccceeEEecCCeEEEEE
Q 012060 214 PRIYRATVTAIADSPT-TVFS-SLVCPHKENSVLLIDKSTLQIS----SEIGRQSGASSKNMAVGKLTWIPATGVVLGSA 287 (472)
Q Consensus 214 m~~~R~~~~ava~l~g-~IYA-Gg~~~~~l~sVE~YDp~t~~~~----~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~G 287 (472)
.....+-.. +..+.. .|.| |+.+ .-+-.|||++.+-. +=||+ +.|- ..+.|.+.+-.++++|
T Consensus 297 ~~~~ksl~~-i~~~~~~~Ll~~gssd----r~irl~DPR~~~gs~v~~s~~gH---~nwV----ssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 297 LTTNKSLNC-ISYSPLSKLLASGSSD----RHIRLWDPRTGDGSVVSQSLIGH---KNWV----SSVKWSPTNEFQLVSG 364 (423)
T ss_pred eecCcceeE-eecccccceeeecCCC----CceeecCCCCCCCceeEEeeecc---hhhh----hheecCCCCceEEEEE
Confidence 444444442 444332 3555 5443 34668999995400 01122 2232 2356778899999998
Q ss_pred EeCCCccccceEEEEcCCCCe
Q 012060 288 IAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 288 g~~g~~~~~~sve~yDp~~~~ 308 (472)
.++ +.+.+||.|+-+
T Consensus 365 S~D------~t~klWDvRS~k 379 (423)
T KOG0313|consen 365 SYD------NTVKLWDVRSTK 379 (423)
T ss_pred ecC------CeEEEEEeccCC
Confidence 854 469999988875
No 179
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=40.62 E-value=2.3e+02 Score=29.96 Aligned_cols=99 Identities=23% Similarity=0.246 Sum_probs=55.4
Q ss_pred ceeeeecCCCCccccCCCCcCcccceeEEEE-eCCeEEEEecCCCCCceeEEEeCCCcccccccccccC------CCccc
Q 012060 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIAD-SPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSG------ASSKN 268 (472)
Q Consensus 196 ~sve~ydp~t~~W~~~a~m~~~R~~~~ava~-l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~------~~W~~ 268 (472)
.++--+|+.+.+ +..-+.-.+.=+-+++- -||+..|+| ..-++|-.|||++ |+|.+ ..|-
T Consensus 137 ~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG---~~dg~I~lwdpkt-------g~~~g~~l~gH~K~I- 203 (480)
T KOG0271|consen 137 TTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASG---SKDGSIRLWDPKT-------GQQIGRALRGHKKWI- 203 (480)
T ss_pred ceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhcc---ccCCeEEEecCCC-------CCcccccccCcccce-
Confidence 356667877664 33333333333322332 356777732 2356899999999 44442 1221
Q ss_pred ccccceeEEe----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 269 MAVGKLTWIP----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 269 v~~m~~~~~~----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
+.+.|-+ -...++|+++ -.++|..||...++++-.....
T Consensus 204 ---t~Lawep~hl~p~~r~las~s------kDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 204 ---TALAWEPLHLVPPCRRLASSS------KDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred ---eEEeecccccCCCccceeccc------CCCCEEEEEccCceEEEEeccC
Confidence 3344443 2233555544 2457999999999977776644
No 180
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.34 E-value=3.8e+02 Score=28.37 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=69.5
Q ss_pred CcEEEeeeCc-----eEEee-------cccCCCCCccccccc---cceeeeeCC---eEEEEcCcCCCCceecceeeeec
Q 012060 141 GSLWIAHGGQ-----ISVYD-------WNLSHSVTVRTHLDN---ITSIRHVWS---DVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 141 g~l~va~GG~-----Ve~YD-------W~~~~m~~~R~~~~~---v~~v~~l~~---~lYavGG~~~~g~~~l~sve~yd 202 (472)
..++ |.||. ++.|| |+-...+.-+.++-+ .+++.++.+ .-+|.+- .+..+--||
T Consensus 161 p~Iv-a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-------~~hqvR~YD 232 (412)
T KOG3881|consen 161 PYIV-ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-------RYHQVRLYD 232 (412)
T ss_pred CceE-ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-------cceeEEEec
Confidence 5566 66764 67777 765333333333321 113334443 3333332 234566789
Q ss_pred CCCCccccCC---CCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccc--cccceeEE
Q 012060 203 VASAHWTDPS---DPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNM--AVGKLTWI 277 (472)
Q Consensus 203 p~t~~W~~~a---~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v--~~m~~~~~ 277 (472)
|.... .+++ -|-.+-++.+ .....+.||+|-.- ..+-.||.++.+. -+-.-.-+ ++....++
T Consensus 233 t~~qR-RPV~~fd~~E~~is~~~-l~p~gn~Iy~gn~~----g~l~~FD~r~~kl-------~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPISSTG-LTPSGNFIYTGNTK----GQLAKFDLRGGKL-------LGCGLKGITGSIRSIHCH 299 (412)
T ss_pred CcccC-cceeEeccccCcceeee-ecCCCcEEEEeccc----chhheecccCcee-------eccccCCccCCcceEEEc
Confidence 88554 4544 3444445553 55666789996222 2344677776220 00001111 11112222
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+ +..+.+++| ...+|+.||..+.+
T Consensus 300 p-~~~~las~G------LDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 300 P-THPVLASCG------LDRYVRIHDIKTRK 323 (412)
T ss_pred C-CCceEEeec------cceeEEEeecccch
Confidence 2 223555555 45689999999977
No 181
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=40.15 E-value=2.8e+02 Score=27.83 Aligned_cols=129 Identities=15% Similarity=0.182 Sum_probs=71.6
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGR 320 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~ 320 (472)
..+|-.||..|.+.+..|.. =+.+.+ +-. ..+|.|..+.. -++|-.||+.+=.++=+...|.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~-----~s~VtS--lEv-s~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P~--- 225 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEF-----NSPVTS--LEV-SQDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMPC--- 225 (334)
T ss_pred CCceEEEEeccCcEEEEEec-----CCCCcc--eee-ccCCCEEEEec-------CceeEEeccccccceeeccCcc---
Confidence 56888999999664444433 112222 111 24666666532 2479999999887665555552
Q ss_pred CCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE---EECCEEEEe
Q 012060 321 SARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH---CYKNQVFVG 397 (472)
Q Consensus 321 ~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~---~~~g~l~~~ 397 (472)
.-.-.++ -- +.-+|+.||.+.-...-|..+ -..+..-++. . .++..| .=+|.+|++
T Consensus 226 -nV~SASL-----~P-~k~~fVaGged~~~~kfDy~T-----geEi~~~nkg-----h----~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 226 -NVESASL-----HP-KKEFFVAGGEDFKVYKFDYNT-----GEEIGSYNKG-----H----FGPVHCVRFSPDGELYAS 284 (334)
T ss_pred -ccccccc-----cC-CCceEEecCcceEEEEEeccC-----CceeeecccC-----C----CCceEEEEECCCCceeec
Confidence 1111111 12 457899999886544333332 2344431111 1 233222 237999999
Q ss_pred cC--CeEEEeecc
Q 012060 398 RG--GSLEVWSRV 408 (472)
Q Consensus 398 ~g--~~~~v~~~~ 408 (472)
|- |.|-+|--.
T Consensus 285 GSEDGTirlWQt~ 297 (334)
T KOG0278|consen 285 GSEDGTIRLWQTT 297 (334)
T ss_pred cCCCceEEEEEec
Confidence 76 999999754
No 182
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.45 E-value=2.5e+02 Score=30.15 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=67.7
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC-eEEE--EecCCCCCceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT-TVFS--SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g-~IYA--Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
..|.|-|+ .+ ++|--+|..+-+ +...|...-..+.++.-... ..|- |.+ -.+|-.+|.+..
T Consensus 256 ~nVLaSgs--aD-----~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~----D~~V~l~D~R~~--- 319 (463)
T KOG0270|consen 256 RNVLASGS--AD-----KTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSY----DGTVALKDCRDP--- 319 (463)
T ss_pred ceeEEecC--CC-----ceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccc----cceEEeeeccCc---
Confidence 46677777 33 456666666553 33344433333332322221 1222 433 356778888751
Q ss_pred cccccccCCCcccccc-cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC-eeeeEEcCC
Q 012060 256 SEIGRQSGASSKNMAV-GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG-EVVWETNEP 316 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~-m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~-~~vW~~~~~ 316 (472)
.+.+-.|+..+- -++.|-+..-..+.+|-. .+.|.-||.|.. ++||+..+.
T Consensus 320 ----~~s~~~wk~~g~VEkv~w~~~se~~f~~~td------dG~v~~~D~R~~~~~vwt~~AH 372 (463)
T KOG0270|consen 320 ----SNSGKEWKFDGEVEKVAWDPHSENSFFVSTD------DGTVYYFDIRNPGKPVWTLKAH 372 (463)
T ss_pred ----cccCceEEeccceEEEEecCCCceeEEEecC------CceEEeeecCCCCCceeEEEec
Confidence 122345888766 567787777777777653 456999999998 999999998
No 183
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=37.41 E-value=6.3 Score=39.33 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=52.7
Q ss_pred EEEEeHHHhhccCCCCccccccCC-----C------CCCCCCEEEc--CChhhHHH-HhhccccCcccCCCCC-------
Q 012060 26 LFETTLSTIQSGGPDSLLYALSNR-----Q------SDEPNPIFID--RDPDVFSV-LLSLLRSNRLPSTASR------- 84 (472)
Q Consensus 26 ~F~t~r~tLa~~~pssyf~amf~~-----~------~~~~~~vfiD--rdp~~F~~-IL~flrtg~l~~~~~~------- 84 (472)
.+.+|+.+.++. |++|+.+.-+ + ......|.+| +=|..|.. +|.++||-++.+.-..
T Consensus 262 eikahkai~aaR--S~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~Sig 339 (401)
T KOG2838|consen 262 EIKAHKAIAAAR--SKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIG 339 (401)
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccc
Confidence 578999999987 7899988532 1 1234555554 55777764 5799999876543110
Q ss_pred -------------------cchHHHHhhhhhcCcchHHhhhc
Q 012060 85 -------------------FSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 85 -------------------~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
....+|++-|.||..+-++++|.
T Consensus 340 SLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e 381 (401)
T KOG2838|consen 340 SLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACE 381 (401)
T ss_pred cHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234666778888888888775
No 184
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=37.28 E-value=42 Score=22.79 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=17.2
Q ss_pred eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccc
Q 012060 308 EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAM 352 (472)
Q Consensus 308 ~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~ 352 (472)
+++|+...+. +...+ .++.++.||+.+ .+|.+..
T Consensus 2 ~~~W~~~~~~-----~~~~~-----~~v~~g~vyv~~-~dg~l~a 35 (40)
T PF13570_consen 2 KVLWSYDTGG-----PIWSS-----PAVAGGRVYVGT-GDGNLYA 35 (40)
T ss_dssp -EEEEEE-SS--------S-------EECTSEEEEE--TTSEEEE
T ss_pred ceeEEEECCC-----CcCcC-----CEEECCEEEEEc-CCCEEEE
Confidence 4678887662 22233 266789999555 4665444
No 185
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=37.13 E-value=3.2e+02 Score=27.66 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=54.1
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
-..++..|.+|++++ ++-.||.++.+...+-++ ..=+.|..|... -+...|+.|..+- +--++|
T Consensus 155 Wg~l~~~ii~Ghe~G----~is~~da~~g~~~v~s~~---~h~~~Ind~q~s---~d~T~FiT~s~Dt------takl~D 218 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDG----SISIYDARTGKELVDSDE---EHSSKINDLQFS---RDRTYFITGSKDT------TAKLVD 218 (327)
T ss_pred ecccCCEEEEecCCC----cEEEEEcccCceeeechh---hhcccccccccc---CCcceEEecccCc------cceeee
Confidence 456778899887765 577899998542222222 112233333222 3666777765433 455666
Q ss_pred CCCCeee--eEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 304 PRSGEVV--WETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 304 p~~~~~v--W~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
.++=++. .++-.|. --.+ ..-+.+++...||++
T Consensus 219 ~~tl~v~Kty~te~Pv------N~aa-----isP~~d~VilgGGqe 253 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPV------NTAA-----ISPLLDHVILGGGQE 253 (327)
T ss_pred ccceeeEEEeeecccc------ccee-----cccccceEEecCCce
Confidence 6665544 3334441 1222 366788888778865
No 186
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=35.48 E-value=1.6e+02 Score=31.34 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=69.5
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeee-eEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVV-WETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~v-W~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+.++.|.|.|+. .++|.+||+|.=+.. =++.. -+...+.+-. +-.+..|.+..|.++.+-.=||.
T Consensus 282 p~~~~ilAT~S~------D~tV~LwDlRnL~~~lh~~e~---H~dev~~V~W-----SPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 282 PFNEFILATGSA------DKTVALWDLRNLNKPLHTFEG---HEDEVFQVEW-----SPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CCCCceEEeccC------CCcEEEeechhcccCceeccC---CCcceEEEEe-----CCCCCceeEecccCCcEEEEecc
Confidence 588999998874 347999999976511 11111 1344444443 56788888888888766555888
Q ss_pred ccC-CCCcEEeecCCCCcccCCCCCCCcCeEE-----EEECCEEEEe--cCCeEEEeecccc
Q 012060 357 NLG-EDPWVYMEDKNPSMISSSGNNNGENKLI-----HCYKNQVFVG--RGGSLEVWSRVRE 410 (472)
Q Consensus 357 s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~-----~~~~g~l~~~--~g~~~~v~~~~~~ 410 (472)
+++ +-+|..-.+.++.|..--.| ...+| .-..-|+.++ -...++||...+.
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgG---H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGG---HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ccccccChhhhccCCcceeEEecC---cccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 887 43455555555543221111 23333 2334566665 3488999988744
No 187
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=35.23 E-value=1.5e+02 Score=29.32 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=66.6
Q ss_pred cceEEEEcCCCCeee-eEEcCCCCCC--CCcccccccceeeeecCCeEEEEcccCCCcccc-----cccccC-CCCcEEe
Q 012060 296 SGYVRMWDPRSGEVV-WETNEPGSGR--SARFGDSFADVDVDVDELTLFKICSKSGDIAMA-----DLRNLG-EDPWVYM 366 (472)
Q Consensus 296 ~~sve~yDp~~~~~v-W~~~~~~~~~--~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~-----dl~s~e-~d~W~~~ 366 (472)
...|-+||.+++.++ |...+...-. .+-...+..|||.+++.+=|.||=...+..+.. |-.+++ ...|..-
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~ 167 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS 167 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec
Confidence 468999999999988 8877663222 455567788999999999999997654433222 334444 5568642
Q ss_pred ecCCCCcccCCCCCCCcCeEEEEECCEEEEecCCe---EEEeecccc
Q 012060 367 EDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGS---LEVWSRVRE 410 (472)
Q Consensus 367 ~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~~---~~v~~~~~~ 410 (472)
-+ .+.. .+ .=..+|-||+++..+ -+|...-+.
T Consensus 168 ~~------k~~~----~n--aFmvCGvLY~~~s~~~~~~~I~yafDt 202 (250)
T PF02191_consen 168 YP------KRSA----GN--AFMVCGVLYATDSYDTRDTEIFYAFDT 202 (250)
T ss_pred cC------chhh----cc--eeeEeeEEEEEEECCCCCcEEEEEEEC
Confidence 21 2221 12 335679999998844 556555544
No 188
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=35.13 E-value=2.3e+02 Score=31.07 Aligned_cols=99 Identities=21% Similarity=0.415 Sum_probs=62.7
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc---------------cC-
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN---------------LG- 359 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s---------------~e- 359 (472)
.+.|..||.+...+|-.+... -|+..=|++.-++-+|+ .||-|..+..=|||. ++
T Consensus 530 dGnI~vwDLhnq~~VrqfqGh--------tDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~ 600 (705)
T KOG0639|consen 530 DGNIAVWDLHNQTLVRQFQGH--------TDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGY 600 (705)
T ss_pred CCcEEEEEcccceeeecccCC--------CCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheeccc
Confidence 457899999998877777765 46666677777788888 788887666556652 22
Q ss_pred --CCCcEEeecCCC---------C---cccCCCCCCCcCeEE---EEECCEEEEecC--CeEEEeecc
Q 012060 360 --EDPWVYMEDKNP---------S---MISSSGNNNGENKLI---HCYKNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 360 --~d~W~~~~~~~~---------~---m~~~~~~~~~~~~~~---~~~~g~l~~~~g--~~~~v~~~~ 408 (472)
++.|..++=.|- + |..-.+ .|.+ -++.|+-|++.| .-+-+|.-+
T Consensus 601 cP~~dWlavGMens~vevlh~skp~kyqlhlhe-----ScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHE-----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred CCCccceeeecccCcEEEEecCCccceeecccc-----cEEEEEEecccCceeeecCchhhhhhccCc
Confidence 777887762111 0 112221 1222 256688888877 446777765
No 189
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=35.12 E-value=1.3e+02 Score=30.77 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=36.8
Q ss_pred ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEE
Q 012060 295 YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVY 365 (472)
Q Consensus 295 ~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~ 365 (472)
..++|++||.|+.+ .. +.|...+-..+ |=.-.|.|||++-..+....-|+|+.+.+|-+.
T Consensus 120 ~D~tvrLWDlR~~~----cq--g~l~~~~~pi~-----AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKK----CQ--GLLNLSGRPIA-----AFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred cCCeEEeeEecCCC----Cc--eEEecCCCcce-----eECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 34589999999776 22 22222222232 234478999999877655555899887444333
No 190
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=35.11 E-value=23 Score=28.33 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.9
Q ss_pred cchHHHHhhhhhcCcchHHhhhc
Q 012060 85 FSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 85 ~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
....+|+.+|.|++|.+|.+.||
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~ 36 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCC 36 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcchHHHHHHH
Confidence 46778999999999999999987
No 191
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=34.19 E-value=6.3e+02 Score=27.31 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=50.4
Q ss_pred eeccc---CCCCCccccccccceeeee-CCeEEEEcCcCCCCc-eecceeeeecCCCCccccCCCCcCcccceeEEEEeC
Q 012060 154 YDWNL---SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGI-HFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP 228 (472)
Q Consensus 154 YDW~~---~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~-~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~ 228 (472)
|-|.+ .-+...+.||..++++.+. |+..++.|| -||. .....+.-.++..+. .++|....- .+ +..+.|
T Consensus 106 YlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~--~~~p~~~f~-~H-tlsITD 179 (476)
T KOG0646|consen 106 YLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDH--SVKPLHIFS-DH-TLSITD 179 (476)
T ss_pred EEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCC--Cccceeeec-cC-cceeEE
Confidence 55876 2334557788888877765 456666676 4554 223333344444443 444443332 22 133332
Q ss_pred CeEEE--EecCC-----CCCceeEEEeCCCccccc
Q 012060 229 TTVFS--SLVCP-----HKENSVLLIDKSTLQISS 256 (472)
Q Consensus 229 g~IYA--Gg~~~-----~~l~sVE~YDp~t~~~~~ 256 (472)
|+. ||-++ +...++-+||..+...+.
T Consensus 180 --l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 180 --LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred --EEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 344 33222 225789999999855433
No 192
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=34.10 E-value=9.1e+02 Score=29.11 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=40.4
Q ss_pred EEEe--CCeEEEEecCCCCCceeEEEeCCCccccccc--cccc---CCC---cccccccceeEEecCCeEEEEEEeCCCc
Q 012060 224 IADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSEI--GRQS---GAS---SKNMAVGKLTWIPATGVVLGSAIAWGAF 293 (472)
Q Consensus 224 va~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~--~~~~---~~~---W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~ 293 (472)
+++. ++.||+.-.. -+.|-+||+.+.....-. |... +.. -....|.-+.+.+-++.||++-.
T Consensus 688 Va~dp~~g~LyVad~~---~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs----- 759 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAG---QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS----- 759 (1057)
T ss_pred EEEecCCCeEEEEECC---CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-----
Confidence 5544 6789994221 346788888763211000 0000 000 01112223334444566998743
Q ss_pred cccceEEEEcCCCCeeee
Q 012060 294 GYSGYVRMWDPRSGEVVW 311 (472)
Q Consensus 294 ~~~~sve~yDp~~~~~vW 311 (472)
..+.|..||+.++.+.|
T Consensus 760 -~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 760 -ESSSIRALDLKTGGSRL 776 (1057)
T ss_pred -CCCeEEEEECCCCcEEE
Confidence 24589999999987433
No 193
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.07 E-value=5.6e+02 Score=26.69 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=69.8
Q ss_pred CCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCccc
Q 012060 190 SGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKN 268 (472)
Q Consensus 190 ~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~ 268 (472)
+|.......+.||+..+-...-+.+.......- ....+|.||. -..... -.....|...+.. .+...|.+
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~-F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~-------e~~~~WrP 237 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY-FVSYEGNVYSADLSGDS-AKFGKPWSLLTDA-------EKADGWRP 237 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEE-EEBTTSEEEEEEETTSS-EEEEEEEESS-HH-------HHHTTEEE
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEE-EEecCCEEEEEeccCCc-ccccCcccccCcc-------ccccCcCC
Confidence 555544455788887765433322211112221 4678889998 332221 2334455554422 11234554
Q ss_pred ccccceeEEecCCeEEEEEEeCCCccc----cceEEEEcCCCCeee--eEEcCCCCCCCCcccccccceeeeecC-CeEE
Q 012060 269 MAVGKLTWIPATGVVLGSAIAWGAFGY----SGYVRMWDPRSGEVV--WETNEPGSGRSARFGDSFADVDVDVDE-LTLF 341 (472)
Q Consensus 269 v~~m~~~~~~~~g~Lyv~Gg~~g~~~~----~~sve~yDp~~~~~v--W~~~~~~~~~~~R~~~~~~d~~v~~~~-~~iy 341 (472)
..==........|.||+. .|.|..+. -..|..||+.+++.| |....+ -.+ |.|.... =.||
T Consensus 238 GG~Q~~A~~~~~~rlyvL-Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--------~~S---i~Vsqd~~P~L~ 305 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVL-MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--------IDS---IAVSQDDKPLLY 305 (342)
T ss_dssp -SSS-EEEETTTTEEEEE-EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--------ESE---EEEESSSS-EEE
T ss_pred cceeeeeeccccCeEEEE-ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--------cce---EEEccCCCcEEE
Confidence 433223335678999985 45554332 238999999999977 555444 222 2233322 2677
Q ss_pred EEcccCCCcc
Q 012060 342 KICSKSGDIA 351 (472)
Q Consensus 342 ~vGg~~g~~~ 351 (472)
++-..++.+.
T Consensus 306 ~~~~~~~~l~ 315 (342)
T PF06433_consen 306 ALSAGDGTLD 315 (342)
T ss_dssp EEETTTTEEE
T ss_pred EEcCCCCeEE
Confidence 7755444443
No 194
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=33.97 E-value=4.9e+02 Score=26.94 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=61.5
Q ss_pred ecceeeeecCCCCcccc--CCC-CcCcccceeEEEEeCCe-EEE---EecC------CCCCceeEEEeCCCccccccccc
Q 012060 194 FYDLSSSRHVASAHWTD--PSD-PRIYRATVTAIADSPTT-VFS---SLVC------PHKENSVLLIDKSTLQISSEIGR 260 (472)
Q Consensus 194 ~l~sve~ydp~t~~W~~--~a~-m~~~R~~~~ava~l~g~-IYA---Gg~~------~~~l~sVE~YDp~t~~~~~~~~~ 260 (472)
++.+++-...-.-.|.+ +.. -++-||++.++|..+|+ -|+ |-.+ ..+.+.=-..|..+++++.
T Consensus 124 CLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~---- 199 (335)
T TIGR03032 124 CLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVA---- 199 (335)
T ss_pred eEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEE----
Confidence 34444433333446875 222 36789999889999987 776 3221 1234444567888855322
Q ss_pred ccCCCcccccccceeEEe--cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 261 QSGASSKNMAVGKLTWIP--ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 261 ~~~~~W~~v~~m~~~~~~--~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..+..+..+ .+|.||+.=. ..+.+-.+||.+++ .+.++.
T Consensus 200 ---------~GLsmPhSPRWhdgrLwvlds------gtGev~~vD~~~G~--~e~Va~ 240 (335)
T TIGR03032 200 ---------SGLSMPHSPRWYQGKLWLLNS------GRGELGYVDPQAGK--FQPVAF 240 (335)
T ss_pred ---------cCccCCcCCcEeCCeEEEEEC------CCCEEEEEcCCCCc--EEEEEE
Confidence 112222222 5899999743 24579999999998 777765
No 195
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=33.91 E-value=3e+02 Score=28.10 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=32.5
Q ss_pred ECCEEEEecC---CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEeeeccc
Q 012060 390 YKNQVFVGRG---GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVSREDVE 455 (472)
Q Consensus 390 ~~g~l~~~~g---~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~~~ 455 (472)
-+|.||++.. +.|.+|++- . ++.++ .+-.. ...++..||| ++||||-...+
T Consensus 222 adG~lw~~a~~~g~~v~~~~pd-G--------~l~~~-----i~lP~-~~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPD-G--------KLLGE-----IKLPV-KRPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred CCCCEEEecccCCceEEEECCC-C--------cEEEE-----EECCC-CCCccceEeCCCcCEEEEEecCCC
Confidence 4577784432 489999985 1 11121 12222 4689999999 99999976653
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=33.68 E-value=2.2e+02 Score=30.18 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=53.5
Q ss_pred CceeEEEeCCCcccccccccccCCCccccc-ccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMA-VGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
.+.|-+|||.+.++++|- . ++..+ +++.-|+ .+++|+ ..|++..+ ...+-+|||..=+ +|+.+
T Consensus 194 DKkvRv~dpr~~~~v~e~-~-----~heG~k~~Raifl-~~g~i~-tTGfsr~s--eRq~aLwdp~nl~------eP~~~ 257 (472)
T KOG0303|consen 194 DKKVRVIDPRRGTVVSEG-V-----AHEGAKPARAIFL-ASGKIF-TTGFSRMS--ERQIALWDPNNLE------EPIAL 257 (472)
T ss_pred cceeEEEcCCCCcEeeec-c-----cccCCCcceeEEe-ccCcee-eecccccc--ccceeccCccccc------Cccee
Confidence 688999999998877765 3 44433 3444444 355544 44544432 4578999987543 44323
Q ss_pred C----CCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 320 R----SARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 320 ~----~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
. +.-....| -....+.||.+|=-|+. +|-.|
T Consensus 258 ~elDtSnGvl~PF----yD~dt~ivYl~GKGD~~-----IRYyE 292 (472)
T KOG0303|consen 258 QELDTSNGVLLPF----YDPDTSIVYLCGKGDSS-----IRYFE 292 (472)
T ss_pred EEeccCCceEEee----ecCCCCEEEEEecCCcc-----eEEEE
Confidence 2 12222222 23456788977754443 46555
No 197
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.35 E-value=2.3e+02 Score=32.24 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=75.5
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
|.-||.++ +++...+=+++..+|..--=-+.+.. .++.+..+.=|. +|. .-.+|-.||-.+
T Consensus 505 GyYFatas--~D~tArLWs~d~~~PlRifaghlsDV-------~cv~FHPNs~Y~aTGS---sD~tVRlWDv~~------ 566 (707)
T KOG0263|consen 505 GYYFATAS--HDQTARLWSTDHNKPLRIFAGHLSDV-------DCVSFHPNSNYVATGS---SDRTVRLWDVST------ 566 (707)
T ss_pred ceEEEecC--CCceeeeeecccCCchhhhccccccc-------ceEEECCcccccccCC---CCceEEEEEcCC------
Confidence 44456665 56666555555555554433333322 246666676666 432 246888999988
Q ss_pred cccccC--CCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 258 IGRQSG--ASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 258 ~~~~~~--~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
|.+.. ++ +..+-..+... -.|+-.|+|+.+ +.|-.||..+++.|=+.... .-...+ +.-+.
T Consensus 567 -G~~VRiF~G-H~~~V~al~~S-p~Gr~LaSg~ed------~~I~iWDl~~~~~v~~l~~H-----t~ti~S---lsFS~ 629 (707)
T KOG0263|consen 567 -GNSVRIFTG-HKGPVTALAFS-PCGRYLASGDED------GLIKIWDLANGSLVKQLKGH-----TGTIYS---LSFSR 629 (707)
T ss_pred -CcEEEEecC-CCCceEEEEEc-CCCceEeecccC------CcEEEEEcCCCcchhhhhcc-----cCceeE---EEEec
Confidence 33220 11 11111222222 366666776644 35999999999844444433 111111 11133
Q ss_pred cCCeEEEEcccCCCccccccc
Q 012060 336 DELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+|.|.|+||.|..+..=|+.
T Consensus 630 -dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 630 -DGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred -CCCEEEecCCCCeEEEEEch
Confidence 78889999987655433444
No 198
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=31.30 E-value=6.2e+02 Score=26.66 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=40.8
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
..+|.+.|.|+ ..+.|..|+..++...|+.-.++.--.==++|. -..|++.|..||.+-
T Consensus 115 shdgtlLATGd------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp---------~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 115 SHDGTLLATGD------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP---------RAHILLAGSTDGSVW 173 (399)
T ss_pred ccCceEEEecC------CCccEEEEEcccCceEEEeecccCceEEEEecc---------cccEEEeecCCCcEE
Confidence 48899999887 455799999999988899876643222223343 346777788887654
No 199
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=31.24 E-value=5.8e+02 Score=25.97 Aligned_cols=179 Identities=19% Similarity=0.280 Sum_probs=92.9
Q ss_pred CCCceeEEEeCCCcccccccccccCCCcccccccceeEEecC-CeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC
Q 012060 239 HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPAT-GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG 317 (472)
Q Consensus 239 ~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~-g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~ 317 (472)
++.+++-.||....+ .-+|.+-....|-. .+++.|.. +-+.+.++. .++|..||.++-+ =...-+
T Consensus 124 SrDkTiklwnt~g~c-k~t~~~~~~~~WVs----cvrfsP~~~~p~Ivs~s~------DktvKvWnl~~~~--l~~~~~- 189 (315)
T KOG0279|consen 124 SRDKTIKLWNTLGVC-KYTIHEDSHREWVS----CVRFSPNESNPIIVSASW------DKTVKVWNLRNCQ--LRTTFI- 189 (315)
T ss_pred CCcceeeeeeecccE-EEEEecCCCcCcEE----EEEEcCCCCCcEEEEccC------CceEEEEccCCcc--hhhccc-
Confidence 467888888888743 11222200022322 24455543 667777664 3479999999887 112222
Q ss_pred CCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC----CCCcEEeecCCCCcccCCCCCCCcCeEEEEECC-
Q 012060 318 SGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG----EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKN- 392 (472)
Q Consensus 318 ~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g- 392 (472)
..+. ..- -|++.. +|.|-+-||++|....=||+.-+ -+--..|.+ ++..-+
T Consensus 190 -gh~~-~v~---t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~s------------------l~fspnr 245 (315)
T KOG0279|consen 190 -GHSG-YVN---TVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNS------------------LCFSPNR 245 (315)
T ss_pred -cccc-cEE---EEEECC-CCCEEecCCCCceEEEEEccCCceeEeccCCCeEee------------------EEecCCc
Confidence 1111 112 233444 88889999999875433666433 111112221 112222
Q ss_pred -EEEEecCCeEEEeeccccccccccCCcceeeccccccccCC-CCceE---EEeecCceEEEeeeccceeEEeecC
Q 012060 393 -QVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG-RGAIS---RIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 393 -~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~i~---~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+|-+.-+-+|-+|+...- .+=+.+ +-.+.+. .+. ++.|| .|+.-|.-||.--.| ++|+|||-.
T Consensus 246 ywL~~at~~sIkIwdl~~~----~~v~~l-~~d~~g~--s~~~~~~~clslaws~dG~tLf~g~td-~~irv~qv~ 313 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESK----AVVEEL-KLDGIGP--SSKAGDPICLSLAWSADGQTLFAGYTD-NVIRVWQVA 313 (315)
T ss_pred eeEeeccCCceEEEeccch----hhhhhc-ccccccc--ccccCCcEEEEEEEcCCCcEEEeeecC-CcEEEEEee
Confidence 344455677999987522 111111 2222222 122 23333 345559999987665 799999943
No 200
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=31.01 E-value=2.1e+02 Score=30.90 Aligned_cols=137 Identities=16% Similarity=0.258 Sum_probs=79.8
Q ss_pred ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcc
Q 012060 295 YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMI 374 (472)
Q Consensus 295 ~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~ 374 (472)
...++..||..+.+ -+...|+-....++-.-| .+.-.+.+-++-|..|... |-..-+++|-.--. |+
T Consensus 278 rrky~ysyDle~ak--~~k~~~~~g~e~~~~e~F----eVShd~~fia~~G~~G~I~---lLhakT~eli~s~K----ie 344 (514)
T KOG2055|consen 278 RRKYLYSYDLETAK--VTKLKPPYGVEEKSMERF----EVSHDSNFIAIAGNNGHIH---LLHAKTKELITSFK----IE 344 (514)
T ss_pred cceEEEEeeccccc--cccccCCCCcccchhhee----EecCCCCeEEEcccCceEE---eehhhhhhhhheee----ec
Confidence 35689999999998 666666545555555555 3334555667788887654 33333555632111 22
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED 453 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~ 453 (472)
+. ++.......+..|++++| |.|-||+=- ...+.|| |||.. +-.|.=.-++--|+ +|++=.|
T Consensus 345 G~-----v~~~~fsSdsk~l~~~~~~GeV~v~nl~--------~~~~~~r-f~D~G--~v~gts~~~S~ng~-ylA~GS~ 407 (514)
T KOG2055|consen 345 GV-----VSDFTFSSDSKELLASGGTGEVYVWNLR--------QNSCLHR-FVDDG--SVHGTSLCISLNGS-YLATGSD 407 (514)
T ss_pred cE-----EeeEEEecCCcEEEEEcCCceEEEEecC--------CcceEEE-EeecC--ccceeeeeecCCCc-eEEeccC
Confidence 22 245555566778899877 666666531 1234455 66652 22222222334454 8888888
Q ss_pred cceeEEee
Q 012060 454 VEGIEVWE 461 (472)
Q Consensus 454 ~~~~~vw~ 461 (472)
.-.|-|..
T Consensus 408 ~GiVNIYd 415 (514)
T KOG2055|consen 408 SGIVNIYD 415 (514)
T ss_pred cceEEEec
Confidence 88888776
No 201
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=30.97 E-value=6e+02 Score=26.10 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=34.9
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS 233 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA 233 (472)
.+.+|++++. . + ..-.||+.+..-...+.|+.+...-- ..++++.|||
T Consensus 75 ~gskIv~~d~--~-~-----~t~vyDt~t~av~~~P~l~~pk~~pi-sv~VG~~LY~ 122 (342)
T PF07893_consen 75 HGSKIVAVDQ--S-G-----RTLVYDTDTRAVATGPRLHSPKRCPI-SVSVGDKLYA 122 (342)
T ss_pred cCCeEEEEcC--C-C-----CeEEEECCCCeEeccCCCCCCCcceE-EEEeCCeEEE
Confidence 4889998876 2 2 14589999998888888877555442 4556888999
No 202
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=30.56 E-value=9.9e+02 Score=28.79 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=37.2
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC--------CCCcccccccceeeeecCCeEEEEcccCCCc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG--------RSARFGDSFADVDVDVDELTLFKICSKSGDI 350 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~--------~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~ 350 (472)
-+|.|||+-. ..+.|..||+.++. .+..+.... ....+.. -..|++.. ++.||+.-..++..
T Consensus 813 ~dG~LYVADs------~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~-P~GIavd~-dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 813 KDGQIYVADS------YNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSE-PAGLALGE-NGRLFVADTNNSLI 882 (1057)
T ss_pred CCCcEEEEEC------CCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCC-ceEEEEeC-CCCEEEEECCCCEE
Confidence 4677999753 34589999999998 444332100 0001100 11223344 67899987766554
Q ss_pred cccccc
Q 012060 351 AMADLR 356 (472)
Q Consensus 351 ~~~dl~ 356 (472)
...|++
T Consensus 883 rvid~~ 888 (1057)
T PLN02919 883 RYLDLN 888 (1057)
T ss_pred EEEECC
Confidence 444443
No 203
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=3e+02 Score=26.94 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=50.5
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.+|.||.+.|.-|. +.|+.||.+++++.|+..=+ ...-||.|+ ..+++.+|..==+++-.+.-|-+++
T Consensus 54 ~~g~i~esTG~yg~----S~ir~~~L~~gq~~~s~~l~---~~~~FgEGi-----t~~gd~~y~LTw~egvaf~~d~~t~ 121 (262)
T COG3823 54 LDGHILESTGLYGF----SKIRVSDLTTGQEIFSEKLA---PDTVFGEGI-----TKLGDYFYQLTWKEGVAFKYDADTL 121 (262)
T ss_pred eCCEEEEecccccc----ceeEEEeccCceEEEEeecC---Cccccccce-----eeccceEEEEEeccceeEEEChHHh
Confidence 68899997775442 48999999999988887644 356789996 8899999998766655443344444
Q ss_pred C
Q 012060 359 G 359 (472)
Q Consensus 359 e 359 (472)
|
T Consensus 122 ~ 122 (262)
T COG3823 122 E 122 (262)
T ss_pred h
Confidence 3
No 204
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=30.24 E-value=3.2e+02 Score=27.40 Aligned_cols=144 Identities=18% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee-ecCCeEEEEcccCCCccccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD-VDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~-~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
++...|++| .-.|++||.++++ ..+.|.-...+..+.. |. ..+|+.-.-||.||....=|||+.
T Consensus 51 dk~~LAaa~-------~qhvRlyD~~S~n----p~Pv~t~e~h~kNVta----VgF~~dgrWMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 51 DKKDLAAAG-------NQHVRLYDLNSNN----PNPVATFEGHTKNVTA----VGFQCDGRWMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred Ccchhhhcc-------CCeeEEEEccCCC----CCceeEEeccCCceEE----EEEeecCeEEEecCCCceEEEEeccCc
Confidence 444555554 2379999999998 3322222223233221 11 335666668999987655578875
Q ss_pred CCC-CcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEe-cCCeEEEeeccccccccccCCcceeeccccccccCCCCc
Q 012060 359 GED-PWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVG-RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGA 436 (472)
Q Consensus 359 e~d-~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 436 (472)
+.+ .-...++ +....++-..+.|++. ..|.|-||.=.+. ..+..+ |-. ..-.
T Consensus 116 ~~qR~~~~~sp-------------Vn~vvlhpnQteLis~dqsg~irvWDl~~~----~c~~~l-----iPe----~~~~ 169 (311)
T KOG0315|consen 116 SCQRNYQHNSP-------------VNTVVLHPNQTELISGDQSGNIRVWDLGEN----SCTHEL-----IPE----DDTS 169 (311)
T ss_pred ccchhccCCCC-------------cceEEecCCcceEEeecCCCcEEEEEccCC----cccccc-----CCC----CCcc
Confidence 511 0111111 1345556667788887 5599999987644 122222 111 1135
Q ss_pred eEEEeecCc-eEEEeeeccceeEEeecCC
Q 012060 437 ISRIDAGGN-RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 437 i~~~~~gg~-r~f~~~~~~~~~~vw~~~~ 464 (472)
|.++..+=| .|.++=++.---=||+...
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 666666543 3445556666667777543
No 205
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=29.81 E-value=7.3e+02 Score=26.95 Aligned_cols=184 Identities=10% Similarity=0.058 Sum_probs=92.4
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC--eEEEEecCCCCCceeEEEeCCCccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT--TVFSSLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g--~IYAGg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
.|.+++| +++.-.+=.+ |-.+|. .+.+|+-.++-+..++.. +| .|+++| +-.-.-.||..+-+ +.
T Consensus 226 plllvaG--~d~~lrifqv---DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~----rrky~ysyDle~ak-~~ 293 (514)
T KOG2055|consen 226 PLLLVAG--LDGTLRIFQV---DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSG----RRKYLYSYDLETAK-VT 293 (514)
T ss_pred ceEEEec--CCCcEEEEEe---cCccCh--hheeeeeccCccceeeecCCCceEEEecc----cceEEEEeeccccc-cc
Confidence 4667777 6664333222 334443 444444333332211211 33 366542 33456689998844 11
Q ss_pred ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec
Q 012060 257 EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD 336 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~ 336 (472)
.+.+..+-. -..|..--....+...+..|+ .+.|-+..-.|++ |-..-.+ .-.++|++-...
T Consensus 294 k~~~~~g~e---~~~~e~FeVShd~~fia~~G~------~G~I~lLhakT~e--li~s~Ki-------eG~v~~~~fsSd 355 (514)
T KOG2055|consen 294 KLKPPYGVE---EKSMERFEVSHDSNFIAIAGN------NGHIHLLHAKTKE--LITSFKI-------EGVVSDFTFSSD 355 (514)
T ss_pred cccCCCCcc---cchhheeEecCCCCeEEEccc------CceEEeehhhhhh--hhheeee-------ccEEeeEEEecC
Confidence 111111100 011222212234445555553 3467788888888 5444332 222456666887
Q ss_pred CCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEEecC--CeEEEeec
Q 012060 337 ELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFVGRG--GSLEVWSR 407 (472)
Q Consensus 337 ~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~~~g--~~~~v~~~ 407 (472)
+-.|+++||+. .....||+.-- ...|+-=+. +++-.+| ..+++.|++|- |=|-+|+.
T Consensus 356 sk~l~~~~~~G-eV~v~nl~~~~~~~rf~D~G~-------------v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 356 SKELLASGGTG-EVYVWNLRQNSCLHRFVDDGS-------------VHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred CcEEEEEcCCc-eEEEEecCCcceEEEEeecCc-------------cceeeeeecCCCceEEeccCcceEEEecc
Confidence 88888888864 55555665332 222332221 2344444 57777777765 77888885
No 206
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.63 E-value=2.1e+02 Score=30.41 Aligned_cols=54 Identities=30% Similarity=0.508 Sum_probs=33.7
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
...|+.||.|+..++- .-|+ |-.+.-++....+..|- .++.++.+...|+|..|
T Consensus 321 DkkvRfwD~Rs~~~~~--sv~~-------gg~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTR--SVPL-------GGRVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKE 374 (459)
T ss_pred ccceEEEeccCCceee--Eeec-------CcceeeEeeccCCeEEe-eecCCCceeeeeccccc
Confidence 4469999999998433 3333 11233334455455555 44777777777888877
No 207
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=29.50 E-value=3.4e+02 Score=27.81 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEE
Q 012060 269 MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWET 313 (472)
Q Consensus 269 v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~ 313 (472)
.|-|-+.+..-.+.||-+|- ..+|..||.+++++.-..
T Consensus 91 gAVM~l~~~~d~s~i~S~gt-------Dk~v~~wD~~tG~~~rk~ 128 (338)
T KOG0265|consen 91 GAVMELHGMRDGSHILSCGT-------DKTVRGWDAETGKRIRKH 128 (338)
T ss_pred ceeEeeeeccCCCEEEEecC-------CceEEEEecccceeeehh
Confidence 34577888877777776642 468999999999944333
No 208
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.24 E-value=6.2e+02 Score=25.68 Aligned_cols=213 Identities=13% Similarity=0.174 Sum_probs=119.1
Q ss_pred eeeecCCC--CccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccccee
Q 012060 198 SSSRHVAS--AHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLT 275 (472)
Q Consensus 198 ve~ydp~t--~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~ 275 (472)
+-+-||.+ ..|+.+-.- |-... ..+.++++-.|-+++. + -..+-+| |. .-|..+.-...+
T Consensus 35 ~~avd~~sG~~~We~ilg~---RiE~s-a~vvgdfVV~GCy~g~-l---Yfl~~~t-------Gs---~~w~f~~~~~vk 96 (354)
T KOG4649|consen 35 VIAVDPQSGNLIWEAILGV---RIECS-AIVVGDFVVLGCYSGG-L---YFLCVKT-------GS---QIWNFVILETVK 96 (354)
T ss_pred EEEecCCCCcEEeehhhCc---eeeee-eEEECCEEEEEEccCc-E---EEEEecc-------hh---heeeeeehhhhc
Confidence 33445554 459887554 44443 5568888766876653 2 2334556 33 347776553332
Q ss_pred EE----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCc-
Q 012060 276 WI----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDI- 350 (472)
Q Consensus 276 ~~----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~- 350 (472)
.. .-.++||. |.|++ +....||++..+||....++ --|+-=+.+.-.+.||+.== .|.+
T Consensus 97 ~~a~~d~~~glIyc-gshd~------~~yalD~~~~~cVykskcgG--------~~f~sP~i~~g~~sly~a~t-~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYC-GSHDG------NFYALDPKTYGCVYKSKCGG--------GTFVSPVIAPGDGSLYAAIT-AGAVL 160 (354)
T ss_pred cceEEcCCCceEEE-ecCCC------cEEEecccccceEEecccCC--------ceeccceecCCCceEEEEec-cceEE
Confidence 22 36778886 45555 46678999999999988773 22322224555778886421 1110
Q ss_pred --ccccccccCCCCc--EEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCCeEEEeeccccccccccCCcceeeccc
Q 012060 351 --AMADLRNLGEDPW--VYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFV 426 (472)
Q Consensus 351 --~~~dl~s~e~d~W--~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~ 426 (472)
...+-.+ +.-| ++-+| -...+. +.....-+.+++|+|-+...-.=+|| ++.. .+ .+ ||
T Consensus 161 avt~~~~~~--~~~w~~~~~~P---iF~spl--cv~~sv~i~~VdG~l~~f~~sG~qvw-r~~t--~G----pI----f~ 222 (354)
T KOG4649|consen 161 AVTKNPYSS--TEFWAATRFGP---IFASPL--CVGSSVIITTVDGVLTSFDESGRQVW-RPAT--KG----PI----FM 222 (354)
T ss_pred EEccCCCCc--ceehhhhcCCc---cccCce--eccceEEEEEeccEEEEEcCCCcEEE-eecC--CC----ce----ec
Confidence 0000111 2223 22222 111212 33356677789999999877668889 4422 11 11 22
Q ss_pred cccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 427 DRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 427 ~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
+- -+.+..=.+|.++-+--|.+-..+.|-=+|++-.
T Consensus 223 ~P--c~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~ 258 (354)
T KOG4649|consen 223 EP--CESRPSCQQISLENENCFCAPLPIAGHLLWATQS 258 (354)
T ss_pred cc--ccCCCcceEEEEecCCeEEEeccccceEEEEecC
Confidence 21 1112223678899999999998899999998643
No 209
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=29.23 E-value=3.3e+02 Score=28.80 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=48.7
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEE--ecCCeEEEEEEeCCCccccceEEEEcCCCCe--ee-eEEcC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI--PATGVVLGSAIAWGAFGYSGYVRMWDPRSGE--VV-WETNE 315 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~--~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~--~v-W~~~~ 315 (472)
.-+|-+||.+|.+.+. +...+-.+-.. .-...|.++|+. ...+++||||++. +| =++..
T Consensus 280 DHTIk~WDletg~~~~----------~~~~~ksl~~i~~~~~~~Ll~~gss------dr~irl~DPR~~~gs~v~~s~~g 343 (423)
T KOG0313|consen 280 DHTIKVWDLETGGLKS----------TLTTNKSLNCISYSPLSKLLASGSS------DRHIRLWDPRTGDGSVVSQSLIG 343 (423)
T ss_pred cceEEEEEeeccccee----------eeecCcceeEeecccccceeeecCC------CCceeecCCCCCCCceeEEeeec
Confidence 3588999999944111 11111111111 124455566552 3469999999985 11 11221
Q ss_pred CCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 316 PGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 316 ~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
. .. .+ .-+.....+-.+|+-|.+|+..-+=|+|+
T Consensus 344 H----~n--wV--ssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 344 H----KN--WV--SSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred c----hh--hh--hheecCCCCceEEEEEecCCeEEEEEecc
Confidence 1 00 11 11224566788888888887654435554
No 210
>PLN03090 auxin-responsive family protein; Provisional
Probab=28.64 E-value=91 Score=26.74 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=45.4
Q ss_pred CCCCCCCCcEEEEECC--eEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEEcCChhhHHHHhhcc
Q 012060 9 TPDRQNGDRVKLNVGG--KLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFIDRDPDVFSVLLSLL 73 (472)
Q Consensus 9 ~~~~~~~~~V~LnVGG--~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfiDrdp~~F~~IL~fl 73 (472)
.|..-...-+.+.||. ++|..+-..|.. |.|..|.... -+.++.+.|-.|...|++||..+
T Consensus 36 ~~~~vpkG~~aVyVG~~~~RfvVp~~~L~h----P~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 36 LPLDVPKGHFPVYVGENRSRYIVPISFLTH----PEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCCCCCcEEEEECCCCEEEEEEHHHcCC----HHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence 4444466778888976 589999888863 5999886532 23456788999999999999876
No 211
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=27.11 E-value=9.8e+02 Score=27.31 Aligned_cols=206 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred EeeeCc---eEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcccc---CCCCcCc
Q 012060 145 IAHGGQ---ISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD---PSDPRIY 217 (472)
Q Consensus 145 va~GG~---Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~---~a~m~~~ 217 (472)
++.||+ +-.|.-.. .|.-+-+-|-.-+-++....... ++.| .+|.-..-|.. .-.+.-.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg-------------SWD~TakvW~~~~l~~~l~gH 139 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG-------------SWDSTAKVWRIGELVYSLQGH 139 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec-------------ccccceEEecchhhhcccCCc
Q ss_pred ccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCcccc
Q 012060 218 RATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 218 R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
-+.+-||+.+....|+ |.-+ ++|-.|.-.+.- ..-+.=...-+....++..-|++.+++|.
T Consensus 140 ~asVWAv~~l~e~~~vTgsaD----KtIklWk~~~~l----------~tf~gHtD~VRgL~vl~~~~flScsNDg~---- 201 (745)
T KOG0301|consen 140 TASVWAVASLPENTYVTGSAD----KTIKLWKGGTLL----------KTFSGHTDCVRGLAVLDDSHFLSCSNDGS---- 201 (745)
T ss_pred chheeeeeecCCCcEEeccCc----ceeeeccCCchh----------hhhccchhheeeeEEecCCCeEeecCCce----
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS 376 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~ 376 (472)
|.+||. +++++-+.- .+.-+-=++ ...+++.+.+.+|.|+. +|.-..+ +++.. +..+
T Consensus 202 --Ir~w~~-~ge~l~~~~-----ghtn~vYsi----s~~~~~~~Ivs~gEDrt-----lriW~~~--e~~q~----I~lP 258 (745)
T KOG0301|consen 202 --IRLWDL-DGEVLLEMH-----GHTNFVYSI----SMALSDGLIVSTGEDRT-----LRIWKKD--ECVQV----ITLP 258 (745)
T ss_pred --EEEEec-cCceeeeee-----ccceEEEEE----EecCCCCeEEEecCCce-----EEEeecC--ceEEE----EecC
Q ss_pred CCCCCCcCeEEEEE-CCEEEEecC-CeEEEeeccc
Q 012060 377 SGNNNGENKLIHCY-KNQVFVGRG-GSLEVWSRVR 409 (472)
Q Consensus 377 ~~~~~~~~~~~~~~-~g~l~~~~g-~~~~v~~~~~ 409 (472)
.- +-=.+.++ +|.|++.+- |-|-||+...
T Consensus 259 tt----siWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 259 TT----SIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cc----ceEEEEEeeCCCEEEeccCceEEEEEecc
No 212
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.98 E-value=62 Score=33.79 Aligned_cols=87 Identities=17% Similarity=0.311 Sum_probs=48.6
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCccc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMIS 375 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~ 375 (472)
.+-|..||..+.++.|+..+.- -. --|+ ++.+..+| -+|.|- + --+|..-.|--+....
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~---G~--V~Gi-----~v~~~~~~-tvgdDK--------t--vK~wk~~~~p~~tilg 146 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHE---GL--VRGI-----CVTQTSFF-TVGDDK--------T--VKQWKIDGPPLHTILG 146 (433)
T ss_pred CceEEEEehhhhhhhheeeccc---Cc--eeeE-----EecccceE-EecCCc--------c--eeeeeccCCcceeeec
Confidence 4469999999998889888771 01 1121 33333333 233221 1 1237765541111111
Q ss_pred CCCCCCCcCeEEE-EECCEEEEecCCeEEEeecc
Q 012060 376 SSGNNNGENKLIH-CYKNQVFVGRGGSLEVWSRV 408 (472)
Q Consensus 376 ~~~~~~~~~~~~~-~~~g~l~~~~g~~~~v~~~~ 408 (472)
.- ..-+|- --.+-+|++.|..|++|.+-
T Consensus 147 ~s-----~~~gIdh~~~~~~FaTcGe~i~IWD~~ 175 (433)
T KOG0268|consen 147 KS-----VYLGIDHHRKNSVFATCGEQIDIWDEQ 175 (433)
T ss_pred cc-----cccccccccccccccccCceeeecccc
Confidence 11 344443 34478999999999999983
No 213
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=26.79 E-value=2.2e+02 Score=30.30 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=55.2
Q ss_pred ccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCCeEEEe
Q 012060 326 DSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVW 405 (472)
Q Consensus 326 ~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~ 405 (472)
.=+.|+-.+.++..||+.+=-.|+ +|-+. |++ |. ++ .+.||||+ ||+|.-.
T Consensus 312 ~LITDilISmDDRFLYvs~WLHGD-----irQYd------IsD---P~----------n~---kLtgQi~l--GG~i~~~ 362 (476)
T KOG0918|consen 312 GLITDILISLDDRFLYVSNWLHGD-----IRQYD------ISD---PK----------NP---KLTGQIFL--GGSIQKG 362 (476)
T ss_pred hhhheeEEeecCcEEEEEeeeecc-----eeeec------cCC---CC----------Cc---ceEEEEEE--CcEeecC
Confidence 345678888888888877643332 33322 333 10 11 26789888 5678777
Q ss_pred eccccccccccCCcceeeccccccccCC-CCceEEEeecCceEEEeee
Q 012060 406 SRVREGRNRSCSEGLFRRNFVDRVEDSG-RGAISRIDAGGNRLFVSRE 452 (472)
Q Consensus 406 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~i~~~~~gg~r~f~~~~ 452 (472)
++|...+++++.+..-=+ +|- ++.-+ |.+.-.++--|-||+||-+
T Consensus 363 s~vkvl~~e~~~~~~ea~-~vK-Grkl~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 363 SPVKVLEEEGLKKQPEAL-YVK-GRKLRGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CceEEeccccccCCCccc-eec-CccccCCceeEEeccCCcEEEEEch
Confidence 777552222333322111 111 11133 4478899999999999853
No 214
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=26.04 E-value=3.9e+02 Score=31.04 Aligned_cols=136 Identities=11% Similarity=0.130 Sum_probs=75.6
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMI 374 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~ 374 (472)
.++|++|+-+++-.+=+.-.. ...++.-.++ ++.--+++-+-+|.+|.+.+-|+..-. ..+| .+++-.+.|.
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~--~ah~~~V~gl----a~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-~l~~~~~~iv 541 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDS--PAHKGEVTGL----AVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-RLGSSITGIV 541 (910)
T ss_pred CCeEEEEEcccCeeecccccC--ccccCceeEE----EecCCCceEEEccCcceEEEEecCCcceeeee-ccCCCcceee
Confidence 468999999999733333111 1222222332 233346778888889887776666544 3334 3333333344
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeecc
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDV 454 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~ 454 (472)
..|. ++.-+.+++.. +|-|+.-+ +-++ =|-|.|+ +++|+++.|-=|-=++.=..+
T Consensus 542 ~hr~----s~l~a~~~ddf-------~I~vvD~~--------t~kv-vR~f~gh-----~nritd~~FS~DgrWlisasm 596 (910)
T KOG1539|consen 542 YHRV----SDLLAIALDDF-------SIRVVDVV--------TRKV-VREFWGH-----GNRITDMTFSPDGRWLISASM 596 (910)
T ss_pred eeeh----hhhhhhhcCce-------eEEEEEch--------hhhh-hHHhhcc-----ccceeeeEeCCCCcEEEEeec
Confidence 4453 22222222221 23333322 4444 3346665 779999999887666655566
Q ss_pred -ceeEEeecC
Q 012060 455 -EGIEVWESS 463 (472)
Q Consensus 455 -~~~~vw~~~ 463 (472)
..|-+|+-|
T Consensus 597 D~tIr~wDlp 606 (910)
T KOG1539|consen 597 DSTIRTWDLP 606 (910)
T ss_pred CCcEEEEecc
Confidence 889999954
No 215
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.89 E-value=1.1e+03 Score=27.40 Aligned_cols=135 Identities=15% Similarity=0.083 Sum_probs=69.8
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEE-EeCCeEEE-EecCCCCCceeEEEeCCCccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIA-DSPTTVFS-SLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava-~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
|.=.|+|+. . +-..-.|+-.+.+......-+..|-. +++ .-||.+-| |++++ .|-+||..+
T Consensus 319 GDWiA~g~~---k---lgQLlVweWqsEsYVlKQQgH~~~i~--~l~YSpDgq~iaTG~eDg----KVKvWn~~S----- 381 (893)
T KOG0291|consen 319 GDWIAFGCS---K---LGQLLVWEWQSESYVLKQQGHSDRIT--SLAYSPDGQLIATGAEDG----KVKVWNTQS----- 381 (893)
T ss_pred CCEEEEcCC---c---cceEEEEEeeccceeeecccccccee--eEEECCCCcEEEeccCCC----cEEEEeccC-----
Confidence 777888872 2 23344555444443332222223333 233 34667777 87764 566777665
Q ss_pred ccccccC-CCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 257 EIGRQSG-ASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 257 ~~~~~~~-~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
|-+.- =.-+.-+-.-.++...++.|+-+ . ..++|+-||...-+.--+...| +++--.|+ ++.
T Consensus 382 --gfC~vTFteHts~Vt~v~f~~~g~~llss-S------LDGtVRAwDlkRYrNfRTft~P----~p~Qfscv----avD 444 (893)
T KOG0291|consen 382 --GFCFVTFTEHTSGVTAVQFTARGNVLLSS-S------LDGTVRAWDLKRYRNFRTFTSP----EPIQFSCV----AVD 444 (893)
T ss_pred --ceEEEEeccCCCceEEEEEEecCCEEEEe-e------cCCeEEeeeecccceeeeecCC----CceeeeEE----EEc
Confidence 32220 00111112334555555555543 2 3468999998888766677766 34445554 222
Q ss_pred cCCeEEEEcccC
Q 012060 336 DELTLFKICSKS 347 (472)
Q Consensus 336 ~~~~iy~vGg~~ 347 (472)
--|-|...|+++
T Consensus 445 ~sGelV~AG~~d 456 (893)
T KOG0291|consen 445 PSGELVCAGAQD 456 (893)
T ss_pred CCCCEEEeeccc
Confidence 235555566544
No 216
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.59 E-value=34 Score=28.40 Aligned_cols=19 Identities=47% Similarity=0.854 Sum_probs=16.3
Q ss_pred EcCChhhHHHHhhccccCc
Q 012060 59 IDRDPDVFSVLLSLLRSNR 77 (472)
Q Consensus 59 iDrdp~~F~~IL~flrtg~ 77 (472)
+..||++|++||++++.+.
T Consensus 39 v~~dp~VFriildLL~~nV 57 (88)
T PF12926_consen 39 VPMDPEVFRIILDLLRLNV 57 (88)
T ss_pred CCcChHHHHHHHHHHHcCC
Confidence 4689999999999998754
No 217
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.43 E-value=7.9e+02 Score=25.63 Aligned_cols=148 Identities=10% Similarity=-0.043 Sum_probs=74.7
Q ss_pred CceEEee---ccc-CCCCCccccccccceeeeeCCeEEEEcCcC---CCCceecceeeeecCCCCcccc-CCCCcCcc--
Q 012060 149 GQISVYD---WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDY---SSGIHFYDLSSSRHVASAHWTD-PSDPRIYR-- 218 (472)
Q Consensus 149 G~Ve~YD---W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~---~~g~~~l~sve~ydp~t~~W~~-~a~m~~~R-- 218 (472)
|.|.++| +.. ...+.....++.+. -=+..||+.-... ..| ..-+.++.||+.+.+=.. +.....+|
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~s---pDg~~lyva~~~~~R~~~G-~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVA---SDGSFFAHASTVYSRIARG-KRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeEC---CCCCEEEEEeccccccccC-CCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 4577777 443 33333333333211 1234678776510 011 234789999999887443 22222223
Q ss_pred -----cceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccc--ceeEEecCCeEEEEE-EeC
Q 012060 219 -----ATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG--KLTWIPATGVVLGSA-IAW 290 (472)
Q Consensus 219 -----~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m--~~~~~~~~g~Lyv~G-g~~ 290 (472)
..+ ++..-+.+||+.-.+ -.++|-++|..+.+.+.||.- +++|...+.- .-..+..++.+..+. ..+
T Consensus 103 ~~~~~~~~-~ls~dgk~l~V~n~~--p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 VGTYPWMT-SLTPDNKTLLFYQFS--PSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred ccCccceE-EECCCCCEEEEecCC--CCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCceEEEEecCC
Confidence 122 243334469984222 257999999999998888887 2444444331 111223344433322 223
Q ss_pred CCccccceEEEEcCCC
Q 012060 291 GAFGYSGYVRMWDPRS 306 (472)
Q Consensus 291 g~~~~~~sve~yDp~~ 306 (472)
|.. ...+...+|+..
T Consensus 178 g~~-~~~~~~vf~~~~ 192 (352)
T TIGR02658 178 GNP-KIKPTEVFHPED 192 (352)
T ss_pred Cce-EEeeeeeecCCc
Confidence 332 244666666643
No 218
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.23 E-value=1e+03 Score=26.96 Aligned_cols=96 Identities=21% Similarity=0.163 Sum_probs=59.3
Q ss_pred eEEeecccCCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCccccCC--CCcCcccceeEEEEe
Q 012060 151 ISVYDWNLSHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS--DPRIYRATVTAIADS 227 (472)
Q Consensus 151 Ve~YDW~~~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a--~m~~~R~~~~ava~l 227 (472)
|..|||.+.+. +++|. -+....|+|- .+| .+|-|+|.. .|.... .-.+-|+-= ++|-.
T Consensus 18 crf~d~~Ps~I----------~slA~s~kS~~lAvsR--t~g-----~IEiwN~~~-~w~~~~vi~g~~drsIE-~L~W~ 78 (691)
T KOG2048|consen 18 CRFVDYKPSEI----------VSLAYSHKSNQLAVSR--TDG-----NIEIWNLSN-NWFLEPVIHGPEDRSIE-SLAWA 78 (691)
T ss_pred EEEEeeeccce----------EEEEEeccCCceeeec--cCC-----cEEEEccCC-CceeeEEEecCCCCcee-eEEEc
Confidence 67788876221 12232 2334456664 344 689999876 587643 234445443 47777
Q ss_pred -CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCccccc
Q 012060 228 -PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMA 270 (472)
Q Consensus 228 -~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~ 270 (472)
++.||- |+. -+|--||+.+++|.-+++...+.-|+...
T Consensus 79 e~~RLFS~g~s-----g~i~EwDl~~lk~~~~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 79 EGGRLFSSGLS-----GSITEWDLHTLKQKYNIDSNGGAIWSIAI 118 (691)
T ss_pred cCCeEEeecCC-----ceEEEEecccCceeEEecCCCcceeEEEe
Confidence 566888 533 26778999998877777765567787653
No 219
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=24.83 E-value=1.6e+02 Score=30.38 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=43.7
Q ss_pred eCCeEEEEecCCCCCceeEEEeCCCccc-ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 227 SPTTVFSSLVCPHKENSVLLIDKSTLQI-SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 227 l~g~IYAGg~~~~~l~sVE~YDp~t~~~-~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
.+++|.+|-+ ...+-.||.+|-|- ++.+- .-+-..+..--++...+.|||.|..+| .|..||--
T Consensus 227 sGefllvgTd----Hp~~rlYdv~T~QcfvsanP-----d~qht~ai~~V~Ys~t~~lYvTaSkDG------~IklwDGV 291 (430)
T KOG0640|consen 227 SGEFLLVGTD----HPTLRLYDVNTYQCFVSANP-----DDQHTGAITQVRYSSTGSLYVTASKDG------AIKLWDGV 291 (430)
T ss_pred CCceEEEecC----CCceeEEeccceeEeeecCc-----ccccccceeEEEecCCccEEEEeccCC------cEEeeccc
Confidence 3456666522 56677888888441 11110 111122233345668999999988555 59999999
Q ss_pred CCeeeeEEc
Q 012060 306 SGEVVWETN 314 (472)
Q Consensus 306 ~~~~vW~~~ 314 (472)
+++||=+..
T Consensus 292 S~rCv~t~~ 300 (430)
T KOG0640|consen 292 SNRCVRTIG 300 (430)
T ss_pred cHHHHHHHH
Confidence 998664443
No 220
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=24.67 E-value=4.6e+02 Score=30.37 Aligned_cols=63 Identities=21% Similarity=0.382 Sum_probs=37.9
Q ss_pred ceEEEEcCCCCeeeeEEcCC---------------CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCC
Q 012060 297 GYVRMWDPRSGEVVWETNEP---------------GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGED 361 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~---------------~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d 361 (472)
+.|..+|++|++++|+..-. +.+..+-.+-. +++.++.+|+-|..++.+...|.++ ++-
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~-----l~TagglvF~~gt~d~~l~A~D~~t-Gk~ 714 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGP-----LATAGGLVFIGATQDNYLRAYDLST-GKE 714 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCc-----EEEcCCEEEEEeCCCCEEEEEECCC-Cce
Confidence 68999999999999998761 11112222222 4777888887455666543324333 244
Q ss_pred CcEE
Q 012060 362 PWVY 365 (472)
Q Consensus 362 ~W~~ 365 (472)
-|..
T Consensus 715 lW~~ 718 (764)
T TIGR03074 715 LWKA 718 (764)
T ss_pred eeEe
Confidence 5654
No 221
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=24.57 E-value=7.1e+02 Score=24.81 Aligned_cols=138 Identities=10% Similarity=0.049 Sum_probs=72.0
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEec-----CCeEEEEEEeCCCcc--cc-ceEEEEcCCCC-----e
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA-----TGVVLGSAIAWGAFG--YS-GYVRMWDPRSG-----E 308 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~-----~g~Lyv~Gg~~g~~~--~~-~sve~yDp~~~-----~ 308 (472)
++|..+||.+++.+..+.- +..+.+.+|+.-.+.. ...|.|+.+...... .. +.+-.|+...+ +
T Consensus 2 s~i~l~d~~~~~~~~~~~l---~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFEL---EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEE---ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred cEEEEEeCCCCeEEEEEEC---CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 4678889988665544444 2344454454444442 233333333322211 12 78889998885 3
Q ss_pred eeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCC-cEEeecCCCCcccCCCCCCCcCeEE
Q 012060 309 VVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDP-WVYMEDKNPSMISSSGNNNGENKLI 387 (472)
Q Consensus 309 ~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~-W~~~~~~~~~m~~~~~~~~~~~~~~ 387 (472)
++..... ..+-.-.+ ++..+++|.+..|.. +. +-.++.++ +...+. +..+- .-..+
T Consensus 79 --l~~i~~~--~~~g~V~a-----i~~~~~~lv~~~g~~--l~---v~~l~~~~~l~~~~~----~~~~~-----~i~sl 135 (321)
T PF03178_consen 79 --LKLIHST--EVKGPVTA-----ICSFNGRLVVAVGNK--LY---VYDLDNSKTLLKKAF----YDSPF-----YITSL 135 (321)
T ss_dssp --EEEEEEE--EESS-EEE-----EEEETTEEEEEETTE--EE---EEEEETTSSEEEEEE----E-BSS-----SEEEE
T ss_pred --EEEEEEE--eecCcceE-----hhhhCCEEEEeecCE--EE---EEEccCcccchhhhe----ecceE-----EEEEE
Confidence 3333221 11111333 355677754444422 22 23333455 888886 33322 46778
Q ss_pred EEECCEEEEecC-CeEEEe
Q 012060 388 HCYKNQVFVGRG-GSLEVW 405 (472)
Q Consensus 388 ~~~~g~l~~~~g-~~~~v~ 405 (472)
.++++.|+++-- .+|.++
T Consensus 136 ~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 136 SVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEETTEEEEEESSSSEEEE
T ss_pred eccccEEEEEEcccCEEEE
Confidence 899999888844 778777
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.79 E-value=1.9e+02 Score=30.11 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=57.1
Q ss_pred CccccCCCCcCcccceeEEEEeCC--eEEEE-ecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCe
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPT--TVFSS-LVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGV 282 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g--~IYAG-g~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~ 282 (472)
..|..+..+...-..+. +....+ +||+. ..+.. .++|.++|.+|++.+..|.. |....++...+..-+..
T Consensus 257 ~~wkvv~~I~~~G~glF-i~thP~s~~vwvd~~~~~~-~~~v~viD~~tl~~~~~i~~-----~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 257 YAWKVVKTIPTQGGGLF-IKTHPDSRYVWVDTFLNPD-ADTVQVIDKKTLKVVKTITP-----GPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp TBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SS-HT-EEEEECCGTEEEE-HHH-----HHT--EEEEEE-TTSSE
T ss_pred hcCeEEEEEECCCCcce-eecCCCCccEEeeccCCCC-CceEEEEECcCcceeEEEec-----cCCCcEeccEECCCCCE
Confidence 67988888877777764 776655 58884 22222 68999999999887666665 44433555556667788
Q ss_pred EEEEEEeCCCccccceEEEEcCCCCe
Q 012060 283 VLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 283 Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+|++-... .+.|..||..|-+
T Consensus 330 v~vS~~~~-----~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 330 VWVSVWDG-----NGAIVVYDAKTLK 350 (369)
T ss_dssp EEEEEE-------TTEEEEEETTTTE
T ss_pred EEEEEecC-----CCEEEEEECCCcE
Confidence 99975521 1289999999988
No 223
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=23.44 E-value=4.5e+02 Score=26.26 Aligned_cols=71 Identities=8% Similarity=-0.036 Sum_probs=43.5
Q ss_pred cccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCc-cccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEE
Q 012060 169 DNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAH-WTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLI 247 (472)
Q Consensus 169 ~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~-W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~Y 247 (472)
+.+.+++.+++.|.+.-| +.+..|+....+ +...+.+..+-... .+.+.+++|++| +...-=.+-.|
T Consensus 89 g~V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~~~~i~-sl~~~~~~I~vg--D~~~sv~~~~~ 156 (321)
T PF03178_consen 89 GPVTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYDSPFYIT-SLSVFKNYILVG--DAMKSVSLLRY 156 (321)
T ss_dssp S-EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE-BSSSEE-EEEEETTEEEEE--ESSSSEEEEEE
T ss_pred CcceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheecceEEEE-EEeccccEEEEE--EcccCEEEEEE
Confidence 445567778888655555 355667666666 88887776555555 488899999996 21111234467
Q ss_pred eCCC
Q 012060 248 DKST 251 (472)
Q Consensus 248 Dp~t 251 (472)
|...
T Consensus 157 ~~~~ 160 (321)
T PF03178_consen 157 DEEN 160 (321)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8744
No 224
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=22.98 E-value=5.6e+02 Score=23.07 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=39.2
Q ss_pred CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc----cceeEEe-cCCeEEEEEEeCCCccccceEEEEc
Q 012060 229 TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV----GKLTWIP-ATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 229 g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~----m~~~~~~-~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
+.|++| ..+++.+||-..|+ +. -++.++. +....+. ...-|.++|| .++|.-||
T Consensus 65 D~LliG-----t~t~llaYDV~~N~-----d~----Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-------ncsi~Gfd 123 (136)
T PF14781_consen 65 DCLLIG-----TQTSLLAYDVENNS-----DL----FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-------NCSIQGFD 123 (136)
T ss_pred CEEEEe-----ccceEEEEEcccCc-----hh----hhhhCccceeEEEEEecCCCCCcEEEECc-------eEEEEEeC
Confidence 346665 35789999999966 11 1233322 2111221 2333444444 46899999
Q ss_pred CCCCeeeeEEc
Q 012060 304 PRSGEVVWETN 314 (472)
Q Consensus 304 p~~~~~vW~~~ 314 (472)
-+-+++-|+..
T Consensus 124 ~~G~e~fWtVt 134 (136)
T PF14781_consen 124 YEGNEIFWTVT 134 (136)
T ss_pred CCCcEEEEEec
Confidence 99999999875
No 225
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=22.85 E-value=3.4e+02 Score=27.88 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=56.5
Q ss_pred CCceeEEEeCCCccccccccccc---CCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 240 KENSVLLIDKSTLQISSEIGRQS---GASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 240 ~l~sVE~YDp~t~~~~~~~~~~~---~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
...++-+||.+|+|.+..+.-.. .-.|++++ ..-+|.|+|- .++ .|++-|..++. -+-.=.
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a--------~sHcLiA~gt-r~~-----~VrLCDi~SGs--~sH~Ls 185 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMA--------MSHCLIAAGT-RDV-----QVRLCDIASGS--FSHTLS 185 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhh--------hcceEEEEec-CCC-----cEEEEeccCCc--ceeeec
Confidence 35688899999977333222211 12222222 2345555543 343 69999999998 322222
Q ss_pred CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 317 GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 317 ~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
-. .+++.-|.=+.-...+.+-|+.||...+=|+|.+.
T Consensus 186 ----GH--r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 186 ----GH--RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred ----cc--cCceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence 11 23333333445577888899999987776888763
No 226
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=22.84 E-value=99 Score=31.11 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=36.0
Q ss_pred ceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeeeCC-eEEEEcC
Q 012060 134 FTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHVWS-DVAAVGS 186 (472)
Q Consensus 134 ~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~-~lYavGG 186 (472)
+|.+|+ +.+++.-| |.+.+|+|+. .++-.-..|-+.++++++-.+ .|.|.++
T Consensus 257 vrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 257 VRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred eEEccC-CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 455566 77884444 4599999998 888776666666667776554 6777776
No 227
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.15 E-value=47 Score=33.05 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=56.0
Q ss_pred CeEEEEeHHHhhccCCCCccccccCCC--CCCCCC-EEEcCChhhHHHHhhccccCcccCCC-CCcchHHHHhhhhhcCc
Q 012060 24 GKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNP-IFIDRDPDVFSVLLSLLRSNRLPSTA-SRFSKQELADEALYYGI 99 (472)
Q Consensus 24 G~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~-vfiDrdp~~F~~IL~flrtg~l~~~~-~~~~v~~Ll~eA~~~ql 99 (472)
+..+..|+.+|++. ++.|.+|+..+ +..... ...|-++..|+.+..|.|+..-...- ....-..++.++..++.
T Consensus 109 ~g~~~~~~~~~~a~--~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVAR--SEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEee--ecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 34489999999987 67999998754 222222 23478899999999999985432211 00111367778888888
Q ss_pred chHHhhhc
Q 012060 100 DSQLKSAM 107 (472)
Q Consensus 100 ~~l~~~c~ 107 (472)
..+...|.
T Consensus 187 ~~lk~~~~ 194 (297)
T KOG1987|consen 187 RHLKLACM 194 (297)
T ss_pred HHHHHHHH
Confidence 88888876
No 228
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=21.93 E-value=47 Score=27.46 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN 445 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~ 445 (472)
+|=|+-++.. ...|.+||= .|++++||||
T Consensus 46 ~~d~n~vel~---vnge~VF~C------------nI~~L~FggD 74 (88)
T PF15092_consen 46 IEDWNVVELV---VNGEIVFQC------------NITDLEFGGD 74 (88)
T ss_pred eccccEEEEE---ECCeEEEEe------------CCceeecCCC
Confidence 4456666551 346778776 6999999997
No 229
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=9.5e+02 Score=24.90 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=83.2
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc-CcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR-IYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~-~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
..+++|+..+ . .+.+...|..+++-.+..+.- .++ .+ ++...++++|+.-.. ...+++-+.|+.++++.
T Consensus 84 ~~~~vyv~~~--~-----~~~v~vid~~~~~~~~~~~vG~~P~-~~-~~~~~~~~vYV~n~~-~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 84 AGNKVYVTTG--D-----SNTVSVIDTATNTVLGSIPVGLGPV-GL-AVDPDGKYVYVANAG-NGNNTVSVIDAATNKVT 153 (381)
T ss_pred CCCeEEEecC--C-----CCeEEEEcCcccceeeEeeeccCCc-eE-EECCCCCEEEEEecc-cCCceEEEEeCCCCeEE
Confidence 5677999886 2 356666775555544333222 222 33 244556689993211 13678999999998866
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
.++-. .. .|.....-+..+++|+.-. ..+.+-.+|+.++. +|+ ..+...... +.+=+++++.-
T Consensus 154 ~~~~v----G~---~P~~~a~~p~g~~vyv~~~------~~~~v~vi~~~~~~-v~~-~~~~~~~~~--~~~P~~i~v~~ 216 (381)
T COG3391 154 ATIPV----GN---TPTGVAVDPDGNKVYVTNS------DDNTVSVIDTSGNS-VVR-GSVGSLVGV--GTGPAGIAVDP 216 (381)
T ss_pred EEEec----CC---CcceEEECCCCCeEEEEec------CCCeEEEEeCCCcc-eec-ccccccccc--CCCCceEEECC
Confidence 65222 11 2333334457888999741 24688999988887 443 111000000 11112344677
Q ss_pred cCCeEEEEcccCC
Q 012060 336 DELTLFKICSKSG 348 (472)
Q Consensus 336 ~~~~iy~vGg~~g 348 (472)
.+.++|+....+.
T Consensus 217 ~g~~~yV~~~~~~ 229 (381)
T COG3391 217 DGNRVYVANDGSG 229 (381)
T ss_pred CCCEEEEEeccCC
Confidence 8888999988763
No 230
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=20.78 E-value=7.2e+02 Score=27.47 Aligned_cols=109 Identities=15% Similarity=0.222 Sum_probs=59.1
Q ss_pred eeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC-eEEEEecCCCCCceeEEEeCCCccc
Q 012060 176 HVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT-TVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 176 ~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g-~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
..++...+|||+ +|. +..|-..-..=...+.....|..+..++...+ ..+|.++ . ..-|-.||-.+.++
T Consensus 452 ~~~~~~vaVGG~--Dgk-----vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D-a--~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 452 SPDGSEVAVGGQ--DGK-----VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD-A--SRKVVLYDVASREV 521 (603)
T ss_pred cCCCCEEEEecc--cce-----EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec-c--CCcEEEEEcccCce
Confidence 367788999994 553 23332222222333444445555554555554 3555332 2 23566777776432
Q ss_pred ccccccccCCCcccccc--cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC
Q 012060 255 SSEIGRQSGASSKNMAV--GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG 317 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~--m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~ 317 (472)
..+.|.+=.+ ..+.|.+ ++.+.|.|+.+ |+-.||+...||
T Consensus 522 -------~~~~w~FHtakI~~~aWsP-~n~~vATGSlD---------------t~Viiysv~kP~ 563 (603)
T KOG0318|consen 522 -------KTNRWAFHTAKINCVAWSP-NNKLVATGSLD---------------TNVIIYSVKKPA 563 (603)
T ss_pred -------ecceeeeeeeeEEEEEeCC-CceEEEecccc---------------ceEEEEEccChh
Confidence 1255875544 3344554 67777776522 334679999996
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=20.66 E-value=4.7e+02 Score=24.32 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=33.3
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
..|..||.+ .+++.+++++. .....|.+.++ ..+.||.+. ..+.|+.||.++.+
T Consensus 83 ~~v~lyd~~-~~~i~~~~~~~--------~n~i~wsP~G~-~l~~~g~~n---~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFGTQP--------RNTISWSPDGR-FLVLAGFGN---LNGDLEFWDVRKKK 136 (194)
T ss_pred cccEEEcCc-ccEeEeecCCC--------ceEEEECCCCC-EEEEEEccC---CCcEEEEEECCCCE
Confidence 378889987 45555555421 12355666544 445555443 24789999999776
No 232
>PLN03220 uncharacterized protein; Provisional
Probab=20.50 E-value=1.9e+02 Score=24.84 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=42.4
Q ss_pred CCCCCCCCcEEEEECC------eEEEEeHHHhhccCCCCccccccCCC-----CC-CCCCEEEcCChhhHHHHhh
Q 012060 9 TPDRQNGDRVKLNVGG------KLFETTLSTIQSGGPDSLLYALSNRQ-----SD-EPNPIFIDRDPDVFSVLLS 71 (472)
Q Consensus 9 ~~~~~~~~~V~LnVGG------~~F~t~r~tLa~~~pssyf~amf~~~-----~~-~~~~vfiDrdp~~F~~IL~ 71 (472)
+|..-...-+.+.||+ ++|.+...-|.. |.|.+|.... -. ..+.+.|-.|.+.|+.+|.
T Consensus 31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~h----P~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~ 101 (105)
T PLN03220 31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNH----PSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA 101 (105)
T ss_pred ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCC----hHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence 3333455677888875 799999888864 5999987521 12 3578888899999998874
No 233
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=20.38 E-value=1.5e+02 Score=30.67 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=42.2
Q ss_pred CCeEEEEecCCCCCceeEEEeCCC-cccccccccccCCCcccccccceeEE----ecCCeEEEEEEeCCCccccceEEEE
Q 012060 228 PTTVFSSLVCPHKENSVLLIDKST-LQISSEIGRQSGASSKNMAVGKLTWI----PATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 228 ~g~IYAGg~~~~~l~sVE~YDp~t-~~~~~~~~~~~~~~W~~v~~m~~~~~----~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
++++|.|- ..-.-|++||.+. .+|+-++.+-.+|+ -+|+ .-.+.+.|+|+.+| +|.+|
T Consensus 262 Gn~lfsGa---Rk~dkIl~WDiR~~~~pv~~L~rhv~~T--------NQRI~FDld~~~~~LasG~tdG------~V~vw 324 (406)
T KOG2919|consen 262 GNKLFSGA---RKDDKILCWDIRYSRDPVYALERHVGDT--------NQRILFDLDPKGEILASGDTDG------SVRVW 324 (406)
T ss_pred cCeecccc---cCCCeEEEEeehhccchhhhhhhhccCc--------cceEEEecCCCCceeeccCCCc------cEEEE
Confidence 45777752 2366899999986 44555555533322 2233 24677778876544 69999
Q ss_pred cCCC-CeeeeEEc
Q 012060 303 DPRS-GEVVWETN 314 (472)
Q Consensus 303 Dp~~-~~~vW~~~ 314 (472)
|..+ ++ |...
T Consensus 325 dlk~~gn--~~sv 335 (406)
T KOG2919|consen 325 DLKDLGN--EVSV 335 (406)
T ss_pred ecCCCCC--cccc
Confidence 9877 66 5444
No 234
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.16 E-value=1.1e+03 Score=25.56 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=55.8
Q ss_pred eeecCCeEEEEcc-cCCCcccccccccC-CCCcEEeecCCCCcccCC--CCCCCcCeEEEEEC-CEEEEecCCeEEEeec
Q 012060 333 VDVDELTLFKICS-KSGDIAMADLRNLG-EDPWVYMEDKNPSMISSS--GNNNGENKLIHCYK-NQVFVGRGGSLEVWSR 407 (472)
Q Consensus 333 v~~~~~~iy~vGg-~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~--~~~~~~~~~~~~~~-g~l~~~~g~~~~v~~~ 407 (472)
+.+-++++|..|. +-|.++. +..| -+.|+.+.+ +...+. .-.+..+..+|+-. |.||+-+ +..|.+
T Consensus 245 ~lt~~G~vy~~Gs~qkgqlG~---~~~e~~~~~~lv~~---~f~i~~i~~vacG~~h~~al~~~G~i~a~G---~n~fgq 315 (476)
T COG5184 245 ALTNEGKVYGWGSNQKGQLGR---PTSERLKLVVLVGD---PFAIRNIKYVACGKDHSLALDEDGEIYAWG---VNIFGQ 315 (476)
T ss_pred EEecCCcEEEecCCcccccCC---chhhhcccccccCC---hhhhhhhhhcccCcceEEEEcCCCeEEEec---cchhcc
Confidence 5677999998885 4455552 3444 444655543 111111 01112344444332 3454433 344444
Q ss_pred cccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeecc
Q 012060 408 VREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDV 454 (472)
Q Consensus 408 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~ 454 (472)
....+.....--.++-||.+. ..+=.|+.++.|=.-+|++|+|-
T Consensus 316 lg~~~~~~~~a~~tk~~~~~~---~~~~~i~~is~ge~H~l~L~~~G 359 (476)
T COG5184 316 LGAGSDGEIGALTTKPNYKQL---LSGVTICSISAGESHSLILRKDG 359 (476)
T ss_pred cccCcccccceeecccccccc---CCCceEEEEecCcceEEEEecCc
Confidence 433111111111224555444 23336999999999999999884
Done!