Query 012060
Match_columns 472
No_of_seqs 316 out of 1482
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 7.7E-31 2.6E-35 258.8 23.3 230 141-408 16-275 (302)
2 3ii7_A Kelch-like protein 7; p 100.0 1.4E-30 4.9E-35 257.3 22.6 230 141-408 12-271 (306)
3 1zgk_A Kelch-like ECH-associat 100.0 2.8E-30 9.6E-35 256.4 23.1 231 140-408 24-286 (308)
4 2vpj_A Kelch-like protein 12; 100.0 3.5E-30 1.2E-34 253.7 23.6 229 141-408 15-277 (301)
5 2xn4_A Kelch-like protein 2; s 100.0 3E-29 1E-33 247.3 20.0 218 140-394 61-302 (302)
6 4asc_A Kelch repeat and BTB do 100.0 4.8E-29 1.6E-33 248.0 20.9 224 142-400 6-252 (315)
7 2woz_A Kelch repeat and BTB do 100.0 3.4E-28 1.2E-32 242.1 22.4 223 141-399 16-261 (318)
8 4asc_A Kelch repeat and BTB do 100.0 1.6E-28 5.5E-33 244.2 18.7 224 139-400 44-306 (315)
9 1zgk_A Kelch-like ECH-associat 100.0 7.2E-28 2.4E-32 239.0 20.6 212 140-389 70-307 (308)
10 2woz_A Kelch repeat and BTB do 100.0 5.9E-28 2E-32 240.4 18.4 222 139-398 55-314 (318)
11 3ii7_A Kelch-like protein 7; p 100.0 7.1E-28 2.4E-32 237.9 18.2 214 140-391 55-294 (306)
12 2uvk_A YJHT; unknown function, 99.9 3.3E-27 1.1E-31 238.2 19.2 226 140-399 19-324 (357)
13 2vpj_A Kelch-like protein 12; 99.9 4E-27 1.4E-31 231.7 18.8 213 140-390 62-299 (301)
14 2uvk_A YJHT; unknown function, 99.9 2.6E-25 8.9E-30 224.2 16.7 203 159-399 4-260 (357)
15 1k3i_A Galactose oxidase precu 99.9 2.2E-24 7.4E-29 236.4 18.6 235 140-410 197-550 (656)
16 2zwa_A Leucine carboxyl methyl 99.9 2.7E-23 9.2E-28 230.0 17.6 230 140-402 397-676 (695)
17 2zwa_A Leucine carboxyl methyl 99.9 2.6E-22 9E-27 222.1 19.1 212 156-408 379-634 (695)
18 1k3i_A Galactose oxidase precu 99.8 5.4E-21 1.8E-25 209.5 14.7 221 151-408 168-496 (656)
19 3drz_A BTB/POZ domain-containi 99.8 8.5E-21 2.9E-25 161.9 8.3 93 13-107 3-101 (107)
20 3kvt_A Potassium channel prote 99.8 1.5E-20 5.2E-25 162.2 8.8 92 14-107 3-98 (115)
21 1t1d_A Protein (potassium chan 99.8 4.7E-20 1.6E-24 155.2 7.5 86 16-103 1-90 (100)
22 1s1g_A Potassium voltage-gated 99.8 1.3E-19 4.3E-24 158.4 8.6 95 10-107 7-105 (124)
23 2nz0_B Potassium voltage-gated 99.8 3.7E-19 1.3E-23 158.5 8.5 95 11-107 30-127 (140)
24 1nn7_A Potassium channel KV4.2 99.8 2.6E-19 8.9E-24 152.1 5.9 89 17-107 1-92 (105)
25 3drx_A BTB/POZ domain-containi 99.8 6.7E-19 2.3E-23 164.9 9.0 93 13-107 9-107 (202)
26 2z8h_A Transcription regulator 99.5 3.7E-15 1.3E-19 131.9 6.4 98 14-115 35-136 (138)
27 2yy9_A Zinc finger and BTB dom 99.5 5.3E-15 1.8E-19 130.6 5.8 94 14-113 24-120 (135)
28 2r9r_B Paddle chimera voltage 99.5 7.8E-15 2.7E-19 156.9 7.5 89 13-103 49-141 (514)
29 3b84_A Zinc finger and BTB dom 99.5 9.6E-15 3.3E-19 126.0 5.5 88 14-107 23-111 (119)
30 3ohu_A Transcription regulator 99.5 7.5E-15 2.6E-19 127.5 4.2 90 14-107 31-122 (125)
31 2if5_A Zinc finger and BTB dom 99.5 1E-14 3.5E-19 125.6 4.5 90 14-107 24-116 (120)
32 2vpk_A Myoneurin; transcriptio 99.5 1.7E-14 5.9E-19 123.6 5.8 88 14-107 21-111 (116)
33 1r29_A B-cell lymphoma 6 prote 99.5 1.7E-14 5.8E-19 125.6 5.4 90 14-107 28-120 (127)
34 2ihc_A Transcription regulator 99.5 6.7E-15 2.3E-19 127.9 2.8 90 14-107 28-119 (124)
35 1buo_A POZ domain, protein (pr 99.5 2.2E-14 7.6E-19 124.0 5.2 87 14-107 27-114 (121)
36 2vkp_A BTB/POZ domain-containi 99.5 3.9E-14 1.3E-18 119.6 6.2 89 14-107 7-102 (109)
37 2ppi_A Gigaxonin; BTB domain, 99.5 2.3E-14 7.8E-19 128.0 4.8 90 14-107 46-140 (144)
38 3m5b_A Zinc finger and BTB dom 99.5 4.7E-14 1.6E-18 122.1 5.7 83 14-107 29-112 (119)
39 3ga1_A Nucleus accumbens-assoc 99.4 1.9E-14 6.3E-19 125.8 2.6 88 14-107 32-121 (129)
40 2q81_A MIZ-1 protein; BTB/POZ 99.4 1.9E-14 6.5E-19 124.1 2.5 87 14-107 26-113 (119)
41 4eoz_A Speckle-type POZ protei 99.4 5.5E-14 1.9E-18 124.4 2.4 97 14-114 24-125 (145)
42 3hve_A Gigaxonin; ubiquitin, c 99.4 1.4E-13 4.8E-18 133.8 4.7 99 14-116 30-135 (256)
43 3htm_A Speckle-type POZ protei 99.4 1.1E-13 3.6E-18 126.0 3.2 98 14-115 33-135 (172)
44 3fkc_A Transcriptional regulat 99.4 2.5E-13 8.7E-18 116.7 5.1 84 14-104 30-115 (116)
45 3i3n_A Kelch-like protein 11; 99.3 2.5E-13 8.6E-18 133.7 3.6 99 14-116 31-143 (279)
46 3hqi_A Speckle-type POZ protei 99.2 3.4E-12 1.2E-16 127.4 4.4 99 14-116 173-276 (312)
47 2ast_A S-phase kinase-associat 98.7 5.3E-09 1.8E-13 94.8 4.0 85 18-107 3-119 (159)
48 4ajy_C Transcription elongatio 98.4 2.3E-07 7.8E-12 77.1 4.7 77 18-99 4-97 (97)
49 2p1m_A SKP1-like protein 1A; F 98.2 3.3E-07 1.1E-11 83.1 0.6 86 16-107 4-118 (160)
50 1fs1_B SKP1, cyclin A/CDK2-ass 98.1 8.1E-07 2.8E-11 78.8 2.5 83 18-107 4-114 (141)
51 1p22_A F-BOX/WD-repeat protein 98.1 0.00061 2.1E-08 69.2 23.1 258 149-463 153-413 (435)
52 2ovr_B FBW7, F-BOX/WD repeat p 98.0 0.0025 8.4E-08 64.7 26.3 251 149-464 139-391 (445)
53 2ovr_B FBW7, F-BOX/WD repeat p 97.9 0.0038 1.3E-07 63.3 24.9 254 149-463 179-441 (445)
54 1l0q_A Surface layer protein; 97.9 0.0013 4.4E-08 65.0 20.6 221 180-464 45-275 (391)
55 3bws_A Protein LP49; two-domai 97.8 0.0028 9.4E-08 63.5 23.0 272 134-463 128-431 (433)
56 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.0027 9.1E-08 63.1 22.6 236 174-464 49-305 (376)
57 3v7d_B Cell division control p 97.8 0.0075 2.6E-07 61.1 25.3 184 224-461 276-462 (464)
58 3vl1_A 26S proteasome regulato 97.7 0.029 1E-06 55.6 26.9 276 141-464 109-419 (420)
59 1l0q_A Surface layer protein; 97.6 0.0031 1E-07 62.2 19.3 220 179-463 2-232 (391)
60 3dsm_A Uncharacterized protein 97.6 0.02 6.8E-07 56.2 24.7 234 173-463 48-301 (328)
61 3v7d_B Cell division control p 97.6 0.02 6.9E-07 57.9 25.4 258 149-463 142-420 (464)
62 1gxr_A ESG1, transducin-like e 97.6 0.036 1.2E-06 52.5 25.3 264 133-461 56-334 (337)
63 3vgz_A Uncharacterized protein 97.6 0.044 1.5E-06 52.6 26.0 224 196-464 69-303 (353)
64 1p22_A F-BOX/WD-repeat protein 97.6 0.0036 1.2E-07 63.4 18.8 222 141-409 183-414 (435)
65 1got_B GT-beta; complex (GTP-b 97.5 0.027 9.1E-07 55.1 24.0 225 178-461 108-340 (340)
66 4a11_B DNA excision repair pro 97.5 0.009 3.1E-07 58.5 20.4 157 170-358 45-219 (408)
67 2aq5_A Coronin-1A; WD40 repeat 97.4 0.016 5.4E-07 57.8 21.7 262 149-463 57-341 (402)
68 3vgz_A Uncharacterized protein 97.4 0.011 3.9E-07 56.8 19.6 220 180-453 102-334 (353)
69 3dsm_A Uncharacterized protein 97.4 0.016 5.4E-07 56.9 21.0 215 195-462 16-251 (328)
70 4aez_A CDC20, WD repeat-contai 97.4 0.023 7.7E-07 56.8 22.1 232 171-463 137-379 (401)
71 1vyh_C Platelet-activating fac 97.4 0.049 1.7E-06 54.9 24.8 264 136-462 116-409 (410)
72 4gqb_B Methylosome protein 50; 97.3 0.013 4.5E-07 58.1 19.4 216 149-409 103-331 (344)
73 3k26_A Polycomb protein EED; W 97.3 0.028 9.7E-07 53.9 21.1 108 179-309 85-195 (366)
74 4g56_B MGC81050 protein; prote 97.3 0.0093 3.2E-07 59.2 17.7 194 170-408 141-342 (357)
75 3iz6_a 40S ribosomal protein R 97.3 0.025 8.6E-07 56.3 20.7 199 231-465 173-376 (380)
76 4g56_B MGC81050 protein; prote 97.3 0.024 8.3E-07 56.1 20.5 271 143-463 18-300 (357)
77 3q7m_A Lipoprotein YFGL, BAMB; 97.2 0.027 9.3E-07 55.6 20.3 210 141-406 144-375 (376)
78 3vl1_A 26S proteasome regulato 97.2 0.19 6.6E-06 49.5 27.2 237 177-464 107-365 (420)
79 3mbr_X Glutamine cyclotransfer 97.2 0.012 4.1E-07 56.6 16.8 195 173-399 25-223 (243)
80 2pm9_A Protein WEB1, protein t 97.2 0.16 5.3E-06 49.9 25.1 247 171-465 70-338 (416)
81 4gqb_B Methylosome protein 50; 97.1 0.013 4.6E-07 58.1 17.0 198 221-464 85-289 (344)
82 2pm9_A Protein WEB1, protein t 97.1 0.036 1.2E-06 54.6 20.1 162 169-357 166-337 (416)
83 3bws_A Protein LP49; two-domai 97.1 0.026 8.9E-07 56.3 19.0 216 197-463 102-333 (433)
84 3i2n_A WD repeat-containing pr 97.1 0.11 3.7E-06 49.7 22.5 288 133-465 23-354 (357)
85 4aow_A Guanine nucleotide-bind 97.1 0.075 2.6E-06 50.5 21.2 149 280-463 184-336 (340)
86 4ery_A WD repeat-containing pr 97.1 0.21 7.3E-06 47.3 25.2 273 133-463 28-311 (312)
87 4aez_A CDC20, WD repeat-contai 97.0 0.032 1.1E-06 55.7 18.9 225 141-408 146-379 (401)
88 3zwl_B Eukaryotic translation 97.0 0.079 2.7E-06 50.7 20.7 198 133-357 37-249 (369)
89 1sq9_A Antiviral protein SKI8; 97.0 0.13 4.3E-06 50.4 22.4 156 280-463 197-394 (397)
90 3ow8_A WD repeat-containing pr 97.0 0.13 4.4E-06 49.9 22.2 186 224-463 128-320 (321)
91 4a11_B DNA excision repair pro 97.0 0.12 4E-06 50.4 21.8 249 169-465 100-366 (408)
92 1k8k_C P40, ARP2/3 complex 41 96.9 0.12 4.3E-06 49.7 21.5 289 133-464 13-361 (372)
93 3nok_A Glutaminyl cyclase; bet 96.9 0.01 3.4E-07 57.9 13.2 194 173-399 59-254 (268)
94 3jrp_A Fusion protein of prote 96.9 0.13 4.4E-06 49.5 21.2 236 178-463 22-286 (379)
95 2aq5_A Coronin-1A; WD40 repeat 96.9 0.25 8.4E-06 48.9 23.8 205 219-465 82-300 (402)
96 1hv2_A Elongin C, ELC1; protei 96.9 0.00056 1.9E-08 56.7 3.4 82 15-99 3-99 (99)
97 3jrp_A Fusion protein of prote 96.8 0.025 8.4E-07 54.7 15.3 195 136-356 19-239 (379)
98 3nol_A Glutamine cyclotransfer 96.8 0.032 1.1E-06 54.1 15.6 196 173-399 47-244 (262)
99 2pbi_B Guanine nucleotide-bind 96.8 0.31 1E-05 47.9 23.2 181 230-461 168-354 (354)
100 3ow8_A WD repeat-containing pr 96.8 0.19 6.7E-06 48.7 21.5 187 224-463 86-278 (321)
101 2iwa_A Glutamine cyclotransfer 96.7 0.026 8.7E-07 54.9 13.9 188 179-399 32-225 (266)
102 2xyi_A Probable histone-bindin 96.6 0.2 7E-06 50.5 21.2 112 223-358 236-354 (430)
103 3sfz_A APAF-1, apoptotic pepti 96.6 0.055 1.9E-06 62.2 18.8 259 149-462 983-1247(1249)
104 2xyi_A Probable histone-bindin 96.6 0.085 2.9E-06 53.3 18.3 157 274-463 237-409 (430)
105 4e54_B DNA damage-binding prot 96.6 0.025 8.5E-07 57.3 14.3 151 178-359 131-284 (435)
106 2fnj_C Transcription elongatio 96.6 0.00099 3.4E-08 54.9 2.8 78 17-99 2-96 (96)
107 3mkq_A Coatomer beta'-subunit; 96.6 0.15 5.2E-06 55.2 21.1 272 133-464 18-302 (814)
108 2pm7_B Protein transport prote 96.6 0.41 1.4E-05 45.4 21.9 235 141-408 21-284 (297)
109 3v7d_A Suppressor of kinetocho 96.6 0.0013 4.3E-08 59.9 3.6 90 15-107 6-126 (169)
110 2vdu_B TRNA (guanine-N(7)-)-me 96.5 0.47 1.6E-05 47.9 23.0 240 134-407 108-389 (450)
111 1r5m_A SIR4-interacting protei 96.5 0.47 1.6E-05 46.1 22.2 198 224-462 212-423 (425)
112 1nir_A Nitrite reductase; hemo 96.4 0.18 6.1E-06 53.5 20.1 241 177-464 147-402 (543)
113 3u4y_A Uncharacterized protein 96.4 0.068 2.3E-06 51.1 15.3 232 178-463 9-251 (331)
114 1pgu_A Actin interacting prote 96.4 0.32 1.1E-05 50.3 21.3 286 132-463 22-327 (615)
115 3mkq_A Coatomer beta'-subunit; 96.4 0.18 6.2E-06 54.6 20.0 143 149-316 119-269 (814)
116 2ynn_A Coatomer subunit beta'; 96.3 0.19 6.5E-06 48.0 18.0 229 133-408 18-258 (304)
117 4ery_A WD repeat-containing pr 96.3 0.73 2.5E-05 43.5 23.2 228 178-463 34-267 (312)
118 3mbr_X Glutamine cyclotransfer 96.2 0.089 3.1E-06 50.4 14.6 147 279-461 29-176 (243)
119 3jro_A Fusion protein of prote 96.2 0.05 1.7E-06 59.8 14.4 184 149-357 31-238 (753)
120 1vyh_C Platelet-activating fac 96.2 0.75 2.6E-05 46.0 22.0 234 178-464 119-369 (410)
121 1erj_A Transcriptional repress 96.1 0.27 9.3E-06 48.9 18.5 237 178-464 134-389 (393)
122 3jro_A Fusion protein of prote 96.1 0.13 4.3E-06 56.6 17.0 236 178-463 20-284 (753)
123 3gre_A Serine/threonine-protei 96.0 0.37 1.3E-05 48.0 19.0 157 280-464 181-359 (437)
124 1k8k_C P40, ARP2/3 complex 41 96.0 0.29 1E-05 47.0 17.5 244 178-467 19-277 (372)
125 1r5m_A SIR4-interacting protei 95.9 0.25 8.6E-06 48.1 16.7 149 173-357 211-361 (425)
126 2vdu_B TRNA (guanine-N(7)-)-me 95.9 0.97 3.3E-05 45.5 21.6 255 171-467 105-394 (450)
127 1erj_A Transcriptional repress 95.9 0.49 1.7E-05 46.9 19.0 147 141-308 135-289 (393)
128 1vcb_B Protein (elongin C); tu 95.8 0.0033 1.1E-07 53.3 2.1 84 13-99 14-112 (112)
129 1pgu_A Actin interacting prote 95.8 1.1 3.7E-05 46.2 21.9 177 151-356 142-327 (615)
130 1gxr_A ESG1, transducin-like e 95.8 1.2 4.3E-05 41.6 20.6 223 178-464 62-296 (337)
131 1ri6_A Putative isomerase YBHE 95.7 0.53 1.8E-05 44.4 17.8 233 197-467 61-311 (343)
132 3nol_A Glutamine cyclotransfer 95.7 0.14 4.7E-06 49.7 13.5 147 279-461 51-198 (262)
133 3u4y_A Uncharacterized protein 95.7 0.56 1.9E-05 44.5 17.9 239 178-464 50-304 (331)
134 3fm0_A Protein CIAO1; WDR39,SG 95.7 0.36 1.2E-05 47.0 16.7 254 171-464 64-335 (345)
135 3i2n_A WD repeat-containing pr 95.6 1.3 4.5E-05 41.9 20.0 237 180-464 32-291 (357)
136 3f3f_A Nucleoporin SEH1; struc 95.6 1.5 5.2E-05 40.8 20.2 165 274-464 63-249 (351)
137 2ynn_A Coatomer subunit beta'; 95.5 1.2 4E-05 42.3 19.5 189 223-463 18-216 (304)
138 3dwl_C Actin-related protein 2 95.5 1.4 4.7E-05 42.6 20.3 150 133-307 16-178 (377)
139 2hes_X YDR267CP; beta-propelle 95.5 0.79 2.7E-05 44.2 18.2 156 280-464 164-328 (330)
140 1ri6_A Putative isomerase YBHE 95.5 1.7 5.9E-05 40.8 22.0 195 229-464 50-262 (343)
141 1sq9_A Antiviral protein SKI8; 95.4 1.2 4.2E-05 43.1 19.6 30 434-464 291-322 (397)
142 3f3f_A Nucleoporin SEH1; struc 95.4 1.2 4.2E-05 41.4 18.8 32 434-465 306-338 (351)
143 3bg1_A Protein SEC13 homolog; 95.4 1.4 4.8E-05 42.1 19.5 236 178-463 24-292 (316)
144 3ei3_B DNA damage-binding prot 95.4 1 3.5E-05 43.8 18.8 188 180-408 87-281 (383)
145 3mmy_A MRNA export factor; mRN 95.3 2 7E-05 40.5 20.5 126 167-316 38-170 (368)
146 3iz6_a 40S ribosomal protein R 95.2 1.1 3.7E-05 44.2 18.6 155 278-463 167-328 (380)
147 1nir_A Nitrite reductase; hemo 95.1 2.7 9.2E-05 44.2 22.4 207 224-464 285-514 (543)
148 2iwa_A Glutamine cyclotransfer 95.1 0.56 1.9E-05 45.3 15.6 147 280-461 31-178 (266)
149 3fm0_A Protein CIAO1; WDR39,SG 95.1 0.88 3E-05 44.2 17.3 245 178-463 27-282 (345)
150 1q7f_A NHL, brain tumor CG1071 95.1 2.2 7.4E-05 39.7 23.0 231 178-464 40-280 (286)
151 3hfq_A Uncharacterized protein 95.1 0.61 2.1E-05 44.8 16.0 255 178-470 50-323 (347)
152 3nok_A Glutaminyl cyclase; bet 94.9 0.58 2E-05 45.4 15.1 144 279-461 63-207 (268)
153 1jmx_B Amine dehydrogenase; ox 94.9 1.6 5.6E-05 41.1 18.4 121 177-308 9-136 (349)
154 1got_B GT-beta; complex (GTP-b 94.9 0.59 2E-05 45.3 15.4 168 149-349 164-335 (340)
155 3k26_A Polycomb protein EED; W 94.9 2.6 9E-05 39.8 20.9 205 230-465 36-261 (366)
156 2pbi_B Guanine nucleotide-bind 94.9 0.77 2.6E-05 44.9 16.3 138 179-349 210-349 (354)
157 1jmx_B Amine dehydrogenase; ox 94.8 1.9 6.4E-05 40.8 18.4 101 227-344 9-110 (349)
158 3sfz_A APAF-1, apoptotic pepti 94.7 1 3.6E-05 51.5 19.2 155 169-357 616-774 (1249)
159 3dwl_C Actin-related protein 2 94.7 1.3 4.3E-05 42.8 17.1 147 178-356 22-176 (377)
160 4gga_A P55CDC, cell division c 94.6 2.6 8.9E-05 41.9 19.8 232 133-408 152-394 (420)
161 2hz6_A Endoplasmic reticulum t 94.4 0.05 1.7E-06 54.6 6.4 138 141-315 10-158 (369)
162 3frx_A Guanine nucleotide-bind 94.3 3.8 0.00013 39.0 20.8 230 178-463 76-316 (319)
163 1kb0_A Quinohemoprotein alcoho 94.3 1.8 6.2E-05 47.0 18.9 167 140-316 77-302 (677)
164 3odt_A Protein DOA1; ubiquitin 94.3 3.3 0.00011 38.2 23.1 230 169-464 19-255 (313)
165 3fvz_A Peptidyl-glycine alpha- 94.3 4.1 0.00014 39.2 24.5 231 197-463 70-321 (329)
166 3gre_A Serine/threonine-protei 94.2 2 6.7E-05 42.6 17.8 154 178-357 181-359 (437)
167 4gga_A P55CDC, cell division c 94.1 4.4 0.00015 40.2 20.2 235 171-462 150-393 (420)
168 4aow_A Guanine nucleotide-bind 93.9 3.4 0.00011 38.8 18.0 237 167-463 37-285 (340)
169 3zwl_B Eukaryotic translation 93.9 2.6 8.7E-05 39.9 17.2 183 242-464 54-249 (369)
170 3odt_A Protein DOA1; ubiquitin 93.9 3.9 0.00013 37.7 20.4 180 135-356 66-254 (313)
171 3scy_A Hypothetical bacterial 93.7 5.2 0.00018 38.4 21.6 119 333-470 218-343 (361)
172 4e54_B DNA damage-binding prot 93.6 1.2 4E-05 44.7 14.9 153 274-464 125-282 (435)
173 3bg1_A Protein SEC13 homolog; 93.6 0.35 1.2E-05 46.5 10.5 100 141-251 25-136 (316)
174 2dg1_A DRP35, lactonase; beta 93.6 5 0.00017 38.0 19.5 118 177-308 54-173 (333)
175 3hfq_A Uncharacterized protein 93.6 4.2 0.00014 38.7 18.3 164 280-467 50-221 (347)
176 2hes_X YDR267CP; beta-propelle 93.5 5.5 0.00019 38.1 23.0 155 280-462 118-278 (330)
177 3lrv_A PRE-mRNA-splicing facto 93.3 2.9 9.8E-05 40.2 16.7 103 337-465 138-245 (343)
178 1kb0_A Quinohemoprotein alcoho 93.2 0.97 3.3E-05 49.2 14.2 118 175-316 74-209 (677)
179 1yiq_A Quinohemoprotein alcoho 93.2 3.6 0.00012 44.8 18.7 158 140-316 70-294 (689)
180 2ad6_A Methanol dehydrogenase 93.2 3.7 0.00013 43.6 18.5 38 279-316 245-291 (571)
181 2pm7_B Protein transport prote 93.1 5.8 0.0002 37.3 23.7 230 177-463 19-284 (297)
182 3g4e_A Regucalcin; six bladed 93.1 5.9 0.0002 37.4 19.4 231 178-469 24-279 (297)
183 1pby_B Quinohemoprotein amine 93.1 5.6 0.00019 37.0 20.2 113 197-315 12-133 (337)
184 3ei3_B DNA damage-binding prot 92.9 7 0.00024 37.7 25.6 192 134-358 79-283 (383)
185 1kv9_A Type II quinohemoprotei 92.9 4.6 0.00016 43.7 19.1 158 140-316 66-289 (668)
186 1yfq_A Cell cycle arrest prote 92.6 6.8 0.00023 36.7 22.5 187 133-356 16-224 (342)
187 3dm0_A Maltose-binding peripla 92.6 6.8 0.00023 41.8 19.8 190 224-463 436-631 (694)
188 3lrv_A PRE-mRNA-splicing facto 92.2 8.3 0.00028 36.8 19.9 64 280-357 138-201 (343)
189 1w6s_A Methanol dehydrogenase 92.1 4.8 0.00017 43.2 17.8 38 279-316 251-297 (599)
190 2mad_H Methylamine dehydrogena 91.8 11 0.00038 37.4 22.2 121 179-312 33-162 (373)
191 1yfq_A Cell cycle arrest prote 91.8 5.6 0.00019 37.3 16.1 54 280-349 262-315 (342)
192 1flg_A Protein (quinoprotein e 91.7 7.1 0.00024 41.6 18.5 38 279-316 256-310 (582)
193 2xzm_R RACK1; ribosome, transl 91.6 9.9 0.00034 36.4 19.5 61 280-355 87-147 (343)
194 3frx_A Guanine nucleotide-bind 91.3 10 0.00035 36.0 19.9 185 224-462 71-265 (319)
195 1nr0_A Actin interacting prote 91.2 16 0.00056 38.2 27.1 189 133-351 23-215 (611)
196 3dm0_A Maltose-binding peripla 90.8 19 0.00065 38.2 25.0 155 171-356 433-591 (694)
197 1yiq_A Quinohemoprotein alcoho 90.7 1.3 4.4E-05 48.4 11.5 117 175-315 67-201 (689)
198 1kv9_A Type II quinohemoprotei 90.4 1.2 4.2E-05 48.3 11.0 118 174-315 62-196 (668)
199 2ad6_A Methanol dehydrogenase 90.3 1.5 5.1E-05 46.7 11.3 120 174-316 58-195 (571)
200 3vu4_A KMHSV2; beta-propeller 90.1 14 0.00048 35.7 21.2 60 178-252 70-129 (355)
201 4h5i_A Guanine nucleotide-exch 89.3 12 0.00043 36.4 16.6 193 134-352 139-338 (365)
202 4gq1_A NUP37; propeller, trans 89.0 14 0.00047 36.3 16.8 69 228-312 155-224 (393)
203 3c75_H MADH, methylamine dehyd 88.6 5.3 0.00018 41.0 13.7 126 179-316 85-219 (426)
204 3hxj_A Pyrrolo-quinoline quino 88.4 4.6 0.00016 37.9 12.3 129 227-406 69-201 (330)
205 1qks_A Cytochrome CD1 nitrite 87.5 32 0.0011 36.4 20.5 155 296-464 363-538 (567)
206 3sjl_D Methylamine dehydrogena 87.3 16 0.00056 36.9 16.1 112 196-316 59-179 (386)
207 1w6s_A Methanol dehydrogenase 86.5 2.7 9.3E-05 45.2 10.3 119 174-316 58-201 (599)
208 3hxj_A Pyrrolo-quinoline quino 86.2 11 0.00038 35.2 13.6 111 198-344 80-194 (330)
209 3vu4_A KMHSV2; beta-propeller 85.9 26 0.00088 33.8 19.5 74 279-365 205-279 (355)
210 2j04_B YDR362CP, TAU91; beta p 85.7 9.1 0.00031 40.1 13.8 150 169-351 267-422 (524)
211 2ymu_A WD-40 repeat protein; u 85.0 35 0.0012 34.6 20.7 137 279-461 436-577 (577)
212 2ymu_A WD-40 repeat protein; u 84.8 36 0.0012 34.5 18.7 138 279-462 395-537 (577)
213 1q7f_A NHL, brain tumor CG1071 84.8 23 0.0008 32.4 21.6 196 224-462 35-236 (286)
214 1flg_A Protein (quinoprotein e 83.9 4.1 0.00014 43.5 10.2 117 174-315 64-202 (582)
215 3no2_A Uncharacterized protein 83.7 29 0.001 32.5 16.9 57 241-316 14-74 (276)
216 1rwi_B Serine/threonine-protei 83.3 25 0.00087 31.6 22.8 223 178-464 34-264 (270)
217 3dw8_B Serine/threonine-protei 82.8 36 0.0012 33.0 16.9 71 280-357 188-258 (447)
218 1nr0_A Actin interacting prote 82.6 50 0.0017 34.5 28.9 258 151-463 129-396 (611)
219 1pby_B Quinohemoprotein amine 82.5 11 0.00038 34.9 11.6 54 296-355 10-63 (337)
220 3e5z_A Putative gluconolactona 82.5 30 0.001 31.9 16.9 48 390-453 227-277 (296)
221 4ggc_A P55CDC, cell division c 82.4 29 0.001 31.7 18.9 86 242-349 45-130 (318)
222 1rwi_B Serine/threonine-protei 81.7 29 0.001 31.1 17.3 137 178-351 118-258 (270)
223 4ggc_A P55CDC, cell division c 81.0 33 0.0011 31.3 15.1 48 297-351 45-92 (318)
224 1qks_A Cytochrome CD1 nitrite 79.7 65 0.0022 33.9 19.6 236 178-464 166-421 (567)
225 3scy_A Hypothetical bacterial 78.8 45 0.0015 31.6 15.7 149 298-467 30-189 (361)
226 3fvz_A Peptidyl-glycine alpha- 78.0 48 0.0016 31.4 21.2 147 242-408 69-226 (329)
227 3dw8_B Serine/threonine-protei 77.8 28 0.00096 33.8 13.3 121 224-357 183-315 (447)
228 2oaj_A Protein SNI1; WD40 repe 75.9 26 0.00089 39.1 13.8 196 133-356 22-241 (902)
229 3mmy_A MRNA export factor; mRN 75.3 52 0.0018 30.5 20.2 151 218-408 39-198 (368)
230 2z2n_A Virginiamycin B lyase; 74.2 50 0.0017 29.8 21.6 225 177-462 24-253 (299)
231 2oit_A Nucleoporin 214KDA; NH2 73.8 5.2 0.00018 40.6 6.8 70 272-356 153-222 (434)
232 2ghs_A AGR_C_1268P; regucalcin 73.2 64 0.0022 30.6 19.6 237 179-469 61-309 (326)
233 3hrp_A Uncharacterized protein 70.5 29 0.001 34.7 11.4 148 177-348 140-289 (409)
234 2xzm_R RACK1; ribosome, transl 70.2 74 0.0025 30.0 21.0 59 391-463 224-284 (343)
235 2fp8_A Strictosidine synthase; 69.6 74 0.0025 29.8 16.6 27 436-462 285-311 (322)
236 2oiz_A Aromatic amine dehydrog 69.0 17 0.00057 35.6 9.1 94 241-344 30-126 (361)
237 1pjx_A Dfpase, DIISOPROPYLFLUO 68.8 70 0.0024 29.2 21.0 59 391-463 236-298 (314)
238 2oaj_A Protein SNI1; WD40 repe 68.8 1.5E+02 0.005 32.9 18.5 105 223-356 22-128 (902)
239 4gq1_A NUP37; propeller, trans 67.1 47 0.0016 32.3 12.0 64 279-356 154-217 (393)
240 1pjx_A Dfpase, DIISOPROPYLFLUO 64.7 68 0.0023 29.3 12.1 28 279-308 27-57 (314)
241 2hz6_A Endoplasmic reticulum t 64.4 7.8 0.00027 38.3 5.6 59 279-355 8-66 (369)
242 2oiz_A Aromatic amine dehydrog 64.3 22 0.00076 34.7 8.9 107 196-312 31-146 (361)
243 2qc5_A Streptogramin B lactona 64.1 82 0.0028 28.3 17.9 179 178-407 72-258 (300)
244 1n7d_A LDL receptor, low-densi 63.3 80 0.0027 34.1 13.8 213 198-461 388-611 (699)
245 3m0c_C LDL receptor, low-densi 63.2 1.6E+02 0.0055 32.4 16.4 224 179-459 396-627 (791)
246 4h5i_A Guanine nucleotide-exch 58.2 1.3E+02 0.0045 28.8 18.2 181 241-464 156-343 (365)
247 3c75_H MADH, methylamine dehyd 56.7 63 0.0021 32.9 10.9 104 242-356 99-208 (426)
248 2z2n_A Virginiamycin B lyase; 55.8 1.1E+02 0.0039 27.3 22.0 222 178-461 67-292 (299)
249 2mad_H Methylamine dehydrogena 51.7 92 0.0031 30.6 11.0 91 243-344 48-143 (373)
250 3sjl_D Methylamine dehydrogena 51.4 58 0.002 32.8 9.5 119 229-356 45-168 (386)
251 3no2_A Uncharacterized protein 50.1 1.6E+02 0.0054 27.3 21.2 114 226-367 45-163 (276)
252 2p9w_A MAL S 1 allergenic prot 48.9 2.1E+02 0.0071 28.2 14.5 114 280-407 76-213 (334)
253 2j04_A TAU60, YPL007P, hypothe 48.4 2.8E+02 0.0095 29.6 16.6 152 274-463 135-296 (588)
254 1ijq_A LDL receptor, low-densi 43.8 2.1E+02 0.0072 26.9 22.7 186 178-407 41-236 (316)
255 2j04_A TAU60, YPL007P, hypothe 43.8 3.1E+02 0.011 29.1 14.0 159 273-463 90-253 (588)
256 1mda_H Methylamine dehydrogena 43.5 1.5E+02 0.0052 29.2 11.1 79 229-315 32-114 (368)
257 3tc9_A Hypothetical hydrolase; 42.7 2.3E+02 0.0079 28.2 12.5 151 271-462 139-299 (430)
258 1npe_A Nidogen, entactin; glyc 42.6 1.9E+02 0.0065 26.0 15.4 143 278-461 45-195 (267)
259 2j04_B YDR362CP, TAU91; beta p 38.7 1.5E+02 0.0052 30.6 10.6 29 434-462 308-340 (524)
260 1mda_H Methylamine dehydrogena 37.6 1.3E+02 0.0045 29.7 9.5 117 178-306 31-158 (368)
261 2p4o_A Hypothetical protein; p 37.3 2.5E+02 0.0086 25.9 18.5 230 178-468 42-292 (306)
262 1n7d_A LDL receptor, low-densi 36.9 4.2E+02 0.014 28.3 15.1 140 177-349 463-606 (699)
263 3amr_A 3-phytase; beta-propell 34.9 3.5E+02 0.012 26.8 14.9 64 384-455 231-311 (355)
264 3v65_B Low-density lipoprotein 34.9 3.3E+02 0.011 26.5 21.7 211 198-461 98-315 (386)
265 3e5z_A Putative gluconolactona 33.9 2.7E+02 0.0091 25.2 13.8 28 275-308 34-61 (296)
266 3v65_B Low-density lipoprotein 32.7 3.5E+02 0.012 26.2 21.8 185 178-408 127-317 (386)
267 2oit_A Nucleoporin 214KDA; NH2 32.5 3.7E+02 0.013 26.5 16.3 202 170-389 151-367 (434)
268 2be1_A Serine/threonine-protei 32.2 44 0.0015 33.1 4.9 75 280-365 55-137 (339)
269 2qc5_A Streptogramin B lactona 31.0 2.8E+02 0.0096 24.5 22.2 225 177-462 29-258 (300)
270 1pd7_B MAD1; PAH2, SIN3, eukar 31.0 19 0.00064 22.0 1.1 14 85-98 3-16 (26)
271 3hrp_A Uncharacterized protein 28.1 4.3E+02 0.015 25.8 13.6 146 279-462 140-296 (409)
272 3v9f_A Two-component system se 27.2 5.9E+02 0.02 27.0 17.2 171 198-410 471-657 (781)
273 3tc9_A Hypothetical hydrolase; 27.2 3.7E+02 0.013 26.6 11.0 133 178-348 149-292 (430)
274 3v9f_A Two-component system se 26.9 5.9E+02 0.02 27.0 18.5 170 198-408 429-610 (781)
275 2ece_A 462AA long hypothetical 26.3 5.5E+02 0.019 26.4 15.5 83 224-315 143-246 (462)
276 4a0p_A LRP6, LRP-6, low-densit 25.6 6.1E+02 0.021 26.7 21.6 183 177-407 47-235 (628)
277 4hw6_A Hypothetical protein, I 24.2 4.1E+02 0.014 26.4 10.7 135 179-347 153-294 (433)
278 1tl2_A L10, protein (tachylect 23.9 1E+02 0.0035 29.0 5.5 124 264-408 38-162 (236)
279 2ojh_A Uncharacterized protein 23.5 3.6E+02 0.012 23.3 15.4 128 196-349 22-152 (297)
280 2fp8_A Strictosidine synthase; 22.6 4.5E+02 0.016 24.1 15.7 24 385-408 287-312 (322)
281 3o4h_A Acylamino-acid-releasin 22.1 3.1E+02 0.011 27.7 9.5 90 200-310 136-231 (582)
282 1npe_A Nidogen, entactin; glyc 22.0 4.2E+02 0.014 23.5 21.8 188 223-461 40-235 (267)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.97 E-value=7.7e-31 Score=258.75 Aligned_cols=230 Identities=17% Similarity=0.175 Sum_probs=191.4
Q ss_pred CcEEEeeeCc-------eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCc
Q 012060 141 GSLWIAHGGQ-------ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAH 207 (472)
Q Consensus 141 g~l~va~GG~-------Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~ 207 (472)
+.||+ .||. +++|| |.. ++|+.+|..+++ +++++.||++|| .++...++.+++|||.+++
T Consensus 16 ~~i~v-~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~lyv~GG--~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 16 KLMVV-VGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGM----VYMAGLVFAVGG--FNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp EEEEE-ECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE----EEETTEEEEESC--BCSSSBCCCEEEEETTTTE
T ss_pred CEEEE-ECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceE----EEECCEEEEEeC--cCCCccccceEEECCCCCc
Confidence 56774 5552 89999 988 999999998854 458999999999 6666778999999999999
Q ss_pred cccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecC
Q 012060 208 WTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PAT 280 (472)
Q Consensus 208 W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~ 280 (472)
|+.+++|+.+|..++ +++++++||+ ||.++ ..++++|+|||.+++ |+.+++|..++. ..+
T Consensus 89 W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~~~~~ 155 (302)
T 2xn4_A 89 WTSVANMRDRRSTLG-AAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE------------WFHVAPMNTRRSSVGVGVVG 155 (302)
T ss_dssp EEEECCCSSCCBSCE-EEEETTEEEEEEEECSSCEEEEEEEEETTTTE------------EEEECCCSSCCBSCEEEEET
T ss_pred eeeCCCCCccccceE-EEEECCEEEEEcCCCCCccCceEEEEeCCCCe------------EeecCCCCCcccCceEEEEC
Confidence 999999999999996 8999999999 88776 458999999999944 999999887764 389
Q ss_pred CeEEEEEEeCCCc-cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 281 GVVLGSAIAWGAF-GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 281 g~Lyv~Gg~~g~~-~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+.||+.||.++.. ..++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++..+.
T Consensus 156 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 156 GLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAE--MSTRRSGAGV-----GVLNNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp TEEEEECCEETTTTEECCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBSSSSBCCCEEEEE
T ss_pred CEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCC--CccccccccE-----EEECCEEEEECCCCCCcccceEEEEe
Confidence 9999999986653 246799999999999 999988 5789999985 78899999999988654333333333
Q ss_pred --CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 360 --EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 360 --~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
+++|+.+++ |+.+| .+..+++++++||+.+| .++++|+..
T Consensus 227 ~~~~~W~~~~~----~~~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 227 PTTNAWRQVAD----MNMCR-----RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp TTTTEEEEECC----CSSCC-----BSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCCCCEeeCCC----CCCcc-----ccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 899999997 77777 47889999999999998 358888775
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=257.32 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=190.5
Q ss_pred CcEEEeeeC----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcccc
Q 012060 141 GSLWIAHGG----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 141 g~l~va~GG----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~ 210 (472)
+.||+.+|. .+++|| |.. ++|+.+|..+++ +++++.||++|| .+ ...++.+++|||.+++|..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~lyv~GG--~~-~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAAC----VFWDNVVYILGG--SQ-LFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEE----EEETTEEEEECC--BS-SSBCCEEEEEETTTTEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEE----EEECCEEEEEeC--CC-CCCcceEEEEeCCCCeEEE
Confidence 567754443 299999 998 999999999844 459999999999 55 5678999999999999999
Q ss_pred CCCCcCcccceeEEEEeCCeEEE-EecC-C-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecCCe
Q 012060 211 PSDPRIYRATVTAIADSPTTVFS-SLVC-P-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PATGV 282 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l~g~IYA-Gg~~-~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~g~ 282 (472)
+++|+.+|..++ +++++++||+ ||.+ + ..++.+++|||.+++ |+.+++|..++. ..++.
T Consensus 85 ~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~~~~~~~ 151 (306)
T 3ii7_A 85 KLGPPTPRDSLA-ACAAEGKIYTSGGSEVGNSALYLFECYDTRTES------------WHTKPSMLTQRCSHGMVEANGL 151 (306)
T ss_dssp EECCSSCCBSCE-EEEETTEEEEECCBBTTBSCCCCEEEEETTTTE------------EEEECCCSSCCBSCEEEEETTE
T ss_pred CCCCCcccccee-EEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc------------eEeCCCCcCCcceeEEEEECCE
Confidence 999999999995 8899999999 8876 3 458999999999944 999999877654 38999
Q ss_pred EEEEEEeCCCcc---ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 283 VLGSAIAWGAFG---YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 283 Lyv~Gg~~g~~~---~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
||+.||.++... .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.....++..+.
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCP--MIEARKNHGL-----VFVKDKIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCEETTEEBCCEEEEE
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCe--EEECCC--ccchhhcceE-----EEECCEEEEEeCCCCCCCCceEEEee
Confidence 999999766532 27899999999999 999998 5889999985 77899999999987653322333332
Q ss_pred --CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 360 --EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 360 --~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
+++|+.+++ |+.+| .+..+++++++||+.+| .++++|+..
T Consensus 223 ~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 223 IKLNEWKMVSP----MPWKG-----VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp TTTTEEEECCC----CSCCB-----SCCEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred CCCCcEEECCC----CCCCc-----cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 899999987 77788 47889999999999999 678888775
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.97 E-value=2.8e-30 Score=256.38 Aligned_cols=231 Identities=14% Similarity=0.152 Sum_probs=191.6
Q ss_pred CCcEEEeee--C----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCC----CCceecceeeeecC
Q 012060 140 DGSLWIAHG--G----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYS----SGIHFYDLSSSRHV 203 (472)
Q Consensus 140 ~g~l~va~G--G----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~----~g~~~l~sve~ydp 203 (472)
++.||+++| + .+++|| |.. ++++.+|..++ ++++++.||++|| . ++...++.+++|||
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG--~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA----GCVVGGLLYAVGG--RNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE----EEEETTEEEEECC--EEEETTEEEECCCEEEEET
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce----EEEECCEEEEECC--CcCCCCCCeecceEEEECC
Confidence 467885544 1 289999 988 99999999884 4458999999999 5 56677899999999
Q ss_pred CCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE----
Q 012060 204 ASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI---- 277 (472)
Q Consensus 204 ~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~---- 277 (472)
.+++|+.+++|+.+|..++ +++++++||+ ||.++ ..++.+|+|||.+++ |+.+++|..++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYEPERDE------------WHLVAPMLTRRIGVGV 164 (308)
T ss_dssp TTTEEEECCCCSSCCBTCE-EEEETTEEEEECCEETTEECCCEEEEETTTTE------------EEECCCCSSCCBSCEE
T ss_pred CCCeEeECCCCCcCccccE-EEEECCEEEEEcCCCCCcccccEEEECCCCCe------------EeECCCCCccccceEE
Confidence 9999999999999999996 8999999999 88765 358999999999944 999999877654
Q ss_pred -ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 278 -PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 278 -~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.....++.
T Consensus 165 ~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~v~ 234 (308)
T 1zgk_A 165 AVLNRLLYAVGGFDGTN-RLNSAECYYPERNE--WRMITA--MNTIRSGAGV-----CVLHNCIYAAGGYDGQDQLNSVE 234 (308)
T ss_dssp EEETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEECCC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBCCCEE
T ss_pred EEECCEEEEEeCCCCCC-cCceEEEEeCCCCe--EeeCCC--CCCccccceE-----EEECCEEEEEeCCCCCCccceEE
Confidence 3799999999987754 47899999999999 999988 5789999985 77899999999987654333333
Q ss_pred ccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 357 NLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 357 s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
.+. +++|+.+++ |+.+| .+..+++++++||+.+| .++++|+..
T Consensus 235 ~yd~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 235 RYDVETETWTFVAP----MKHRR-----SALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEETTTTEEEECCC----CSSCC-----BSCEEEEETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EEeCCCCcEEECCC----CCCCc-----cceEEEEECCEEEEEcCcCCCcccceEEEEcCC
Confidence 333 899999997 77788 47889999999999998 467777764
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=253.65 Aligned_cols=229 Identities=14% Similarity=0.231 Sum_probs=190.6
Q ss_pred CcEEEeeeC---------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 141 GSLWIAHGG---------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 141 g~l~va~GG---------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
+.+|+ .|| .+++|| |.. ++++.+|..+++ +.+++.||++|| .++...++.+++||+.+
T Consensus 15 ~~i~~-~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~l~v~GG--~~~~~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 15 EVLLV-VGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS----VSLHDRIYVIGG--YDGRSRLSSVECLDYTA 87 (301)
T ss_dssp EEEEE-ECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEE----EEETTEEEEECC--BCSSCBCCCEEEEETTC
T ss_pred CEEEE-EeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccE----EEECCEEEEEcC--CCCCccCceEEEEECCC
Confidence 56774 455 289999 988 889999998844 458999999999 66777889999999999
Q ss_pred Cc---cccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE---
Q 012060 206 AH---WTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI--- 277 (472)
Q Consensus 206 ~~---W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~--- 277 (472)
++ |+.+++|+.+|..++ +++++++||+ ||.++ ..++++|+|||.+++ |+.+++|..++.
T Consensus 88 ~~~~~W~~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~ 154 (301)
T 2vpj_A 88 DEDGVWYSVAPMNVRRGLAG-ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ------------WSMLGDMQTAREGAG 154 (301)
T ss_dssp CTTCCCEEECCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE------------EEEEEECSSCCBSCE
T ss_pred CCCCeeEECCCCCCCcccee-EEEECCEEEEEcccCCCcccceEEEEcCCCCe------------EEECCCCCCCcccce
Confidence 99 999999999999995 8899999999 88776 458999999999944 999998876654
Q ss_pred --ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 --PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 --~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++
T Consensus 155 ~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v 224 (301)
T 2vpj_A 155 LVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGH--WTNVTP--MATKRSGAGV-----ALLNDHIYVVGGFDGTAHLSSV 224 (301)
T ss_dssp EEEETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBCCCE
T ss_pred EEEECCEEEEECCCCCCc-ccceEEEEeCCCCc--EEeCCC--CCcccccceE-----EEECCEEEEEeCCCCCcccceE
Confidence 3899999999987654 57899999999999 999988 5889999984 7789999999998865433233
Q ss_pred cccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 356 RNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
..+. +++|+.+++ |+.+| ....+++++++||+.+| .+|++|+..
T Consensus 225 ~~yd~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 225 EAYNIRTDSWTTVTS----MTTPR-----CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EEEETTTTEEEEECC----CSSCC-----BSCEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred EEEeCCCCcEEECCC----CCCcc-----cceeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 3333 899999987 77777 47888999999999998 467777753
No 5
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=247.33 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=178.1
Q ss_pred CCcEEEeeeC-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 140 DGSLWIAHGG-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~GG-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++.||+.+|- .+++|| |.. ++|+.+|..+++ +++++.||++|| .++...++.+++|||.++
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG--~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGA----AVLNGLLYAVGG--FDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE----EEETTEEEEEEE--ECSSCEEEEEEEEETTTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEE----EEECCEEEEEcC--CCCCccCceEEEEeCCCC
Confidence 4678854441 289999 998 999999999854 458999999999 677778899999999999
Q ss_pred ccccCCCCcCcccceeEEEEeCCeEEE-EecCCC---CCceeEEEeCCCcccccccccccCCCcccccccceeEE-----
Q 012060 207 HWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPH---KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI----- 277 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~---~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~----- 277 (472)
+|+.+++|+.+|..++ +++++++||+ ||.++. .++.+|+|||.+++ |+.+++|..++.
T Consensus 135 ~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~~~ 201 (302)
T 2xn4_A 135 EWFHVAPMNTRRSSVG-VGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE------------WTYIAEMSTRRSGAGVG 201 (302)
T ss_dssp EEEEECCCSSCCBSCE-EEEETTEEEEECCEETTTTEECCCEEEEETTTTE------------EEEECCCSSCCBSCEEE
T ss_pred eEeecCCCCCcccCce-EEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc------------EEECCCCccccccccEE
Confidence 9999999999999995 8999999999 887653 38999999999943 999998877654
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
..++.||+.||.++.. .++++++|||++++ |+..++ |..+|.++++ ++++++||++||.++.....++..
T Consensus 202 ~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~~~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v~~ 271 (302)
T 2xn4_A 202 VLNNLLYAVGGHDGPL-VRKSVEVYDPTTNA--WRQVAD--MNMCRRNAGV-----CAVNGLLYVVGGDDGSCNLASVEY 271 (302)
T ss_dssp EETTEEEEECCBSSSS-BCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBCCCEEE
T ss_pred EECCEEEEECCCCCCc-ccceEEEEeCCCCC--EeeCCC--CCCccccCeE-----EEECCEEEEECCcCCCcccccEEE
Confidence 3899999999987753 56799999999999 999998 5788998884 778999999999876533223332
Q ss_pred cC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEE
Q 012060 358 LG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQV 394 (472)
Q Consensus 358 ~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l 394 (472)
+. +++|+.+++ .|+.+| ++.++++++++|
T Consensus 272 yd~~~~~W~~~~~---~~~~~r-----~~~~~~~~~~~i 302 (302)
T 2xn4_A 272 YNPTTDKWTVVSS---CMSTGR-----SYAGVTVIDKRL 302 (302)
T ss_dssp EETTTTEEEECSS---CCSSCC-----BSCEEEEEEC--
T ss_pred EcCCCCeEEECCc---ccCccc-----ccceEEEecccC
Confidence 22 899999972 277888 588999998875
No 6
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=247.95 Aligned_cols=224 Identities=10% Similarity=0.071 Sum_probs=178.3
Q ss_pred cEEEeeeCceEEee-----cccCCC--CCccccccccceeeeeCCeEEEEcCcC----CCCceecceeeeecCCCCcccc
Q 012060 142 SLWIAHGGQISVYD-----WNLSHS--VTVRTHLDNITSIRHVWSDVAAVGSDY----SSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 142 ~l~va~GG~Ve~YD-----W~~~~m--~~~R~~~~~v~~v~~l~~~lYavGG~~----~~g~~~l~sve~ydp~t~~W~~ 210 (472)
.+++.+|..+++|| |..+++ +.+|.+++ ++++++.||++||.. .......+.+++|||.+++|+.
T Consensus 6 ~l~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 6 LIFMISEEGAVAYDPAANECYCASLSSQVPKNHVS----LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEECCCCSCSSEEE----EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEEEcCCceEEECCCCCeEecCCCCCCCCccceE----EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 45644444599999 987444 55788874 445899999999931 1122345569999999999999
Q ss_pred CCCCcCcccceeEEEEeCCeEEE-EecC----CCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecC
Q 012060 211 PSDPRIYRATVTAIADSPTTVFS-SLVC----PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PAT 280 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l~g~IYA-Gg~~----~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~ 280 (472)
+++|+.+|..++ +++++++||+ ||.+ ...++.+++|||.+++ |+.+++|..+|. ..+
T Consensus 82 ~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~~~~~ 148 (315)
T 4asc_A 82 MPPLPSPRCLFG-LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK------------WGESDPLPYVVYGHTVLSHM 148 (315)
T ss_dssp CCCBSSCEESCE-EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE------------EEECCCCSSCCBSCEEEEET
T ss_pred CCCCCcchhcee-EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc------------EeECCCCCCcccceeEEEEC
Confidence 999999999995 9999999999 8854 3458999999999944 999999877754 389
Q ss_pred CeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-
Q 012060 281 GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG- 359 (472)
Q Consensus 281 g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e- 359 (472)
++||+.||.+.....++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++..+.
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAP--MQTARSLFGA-----TVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCC--CSSCCBSCEE-----EEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCC--CCCchhceEE-----EEECCEEEEEeccCCCCccceEEEEEC
Confidence 9999999974333367899999999999 999998 5889999984 78899999999987654332333332
Q ss_pred -CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 360 -EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 360 -~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
+++|+.+++ |+.+| .+..+++++++||+.+|-
T Consensus 220 ~~~~W~~~~~----~p~~r-----~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 220 TDNKWAPFEA----FPQER-----SSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp TTTEEEEECC----CSSCC-----BSCEEEEETTEEEEEEEE
T ss_pred CCCeEEECCC----CCCcc-----cceeEEEECCEEEEECCc
Confidence 899999997 77888 578899999999999883
No 7
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.96 E-value=3.4e-28 Score=242.13 Aligned_cols=223 Identities=13% Similarity=0.146 Sum_probs=175.8
Q ss_pred CcEEEeeeCc-eEEee-----cccCCC--CCccccccccceeeeeCCeEEEEcCcCCC--Cc--eecceeeeecCCCCcc
Q 012060 141 GSLWIAHGGQ-ISVYD-----WNLSHS--VTVRTHLDNITSIRHVWSDVAAVGSDYSS--GI--HFYDLSSSRHVASAHW 208 (472)
Q Consensus 141 g~l~va~GG~-Ve~YD-----W~~~~m--~~~R~~~~~v~~v~~l~~~lYavGG~~~~--g~--~~l~sve~ydp~t~~W 208 (472)
+.+| +.||. +++|| |...++ +.+|.+++ ++.+++.||++||...+ +. ...+.+++|||.+++|
T Consensus 16 ~~i~-~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 16 DLIL-LVNDTAAVAYDPMENECYLTALAEQIPRNHSS----IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEE-EECSSEEEEEETTTTEEEEEEECTTSCSSEEE----EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred chhh-hccccceEEECCCCCceecccCCccCCccceE----EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 4566 55654 99999 977333 46788774 44589999999993211 11 2234589999999999
Q ss_pred ccCCCCcCcccceeEEEEeCCeEEE-EecC--C-CCCceeEEEeCCCcccccccccccCCCcccccccceeEEe-----c
Q 012060 209 TDPSDPRIYRATVTAIADSPTTVFS-SLVC--P-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-----A 279 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~--~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-----~ 279 (472)
..+++|+.+|+.++ +++++++||+ ||.+ + ..++.+++|||.+++ |+.+++|..++.. .
T Consensus 91 ~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 91 VGLPPLPSARCLFG-LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK------------WSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EECSCBSSCBCSCE-EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTE------------EEEECCCSSCEESCEEEEE
T ss_pred EECCCCCccccccc-eEEECCEEEEEcCccCCCCcccceEEEEeCCCCC------------EeECCCCCCcccccEEEEE
Confidence 99999999999995 9999999999 8875 2 358999999999944 9999998877653 8
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.||+.||.+.....++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++..+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAP--MKTPRSMFGV-----AIHKGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCC--CCCCcccceE-----EEECCEEEEEcCcCCCCccceEEEEE
Confidence 99999999874433357899999999999 999998 5889999985 77899999999987653322333332
Q ss_pred --CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 360 --EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 360 --~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
+++|+.+++ |+.+| ....+++++++||+.+|
T Consensus 229 ~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 229 LKTNKWEVMTE----FPQER-----SSISLVSLAGSLYAIGG 261 (318)
T ss_dssp TTTCCEEECCC----CSSCC-----BSCEEEEETTEEEEECC
T ss_pred CCCCeEEECCC----CCCcc-----cceEEEEECCEEEEECC
Confidence 899999997 77778 47889999999999988
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=244.16 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=180.6
Q ss_pred cCCcEEEeeeC-----c--------eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCC-CCceeccee
Q 012060 139 DDGSLWIAHGG-----Q--------ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYS-SGIHFYDLS 198 (472)
Q Consensus 139 ~~g~l~va~GG-----~--------Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~-~g~~~l~sv 198 (472)
.++.+|+.+|- . +++|| |.. ++|+.+|..++ ++++++.||++||... ++...++.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG----LGEALNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE----EEEETTEEEEECCEESSTTCCBCCCE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee----EEEECCEEEEEeCCcCCCCCcccceE
Confidence 34788866551 0 78899 988 99999999984 4458999999999421 356788999
Q ss_pred eeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecC-C-CCCceeEEEeCCCcccccccccccCCCccccccccee
Q 012060 199 SSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVC-P-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLT 275 (472)
Q Consensus 199 e~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~-~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~ 275 (472)
++|||.+++|+.+++|+.+|..++ +++++++||+ ||.+ . ..++.+++|||.+++ |+.+++|..+
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~ 186 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHT-VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE------------WKELAPMQTA 186 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCTTSCBCCCEEEEETTTTE------------EEECCCCSSC
T ss_pred EEECCCCCcEeECCCCCCccccee-EEEECCEEEEEeCCCCCCcccceEEEEeCCCCe------------EEECCCCCCc
Confidence 999999999999999999999995 8899999999 8873 3 458999999999944 9999998877
Q ss_pred EE-----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC-
Q 012060 276 WI-----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD- 349 (472)
Q Consensus 276 ~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~- 349 (472)
|. ..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.
T Consensus 187 r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~l~v~GG~~~~~ 256 (315)
T 4asc_A 187 RSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNK--WAPFEA--FPQERSSLSL-----VSLVGTLYAIGGFATLE 256 (315)
T ss_dssp CBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEEEEEEEEE
T ss_pred hhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCe--EEECCC--CCCcccceeE-----EEECCEEEEECCccccC
Confidence 54 3899999999987653 57799999999999 999998 5899999985 7889999999997531
Q ss_pred -----c---ccccccccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 350 -----I---AMADLRNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 350 -----~---~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
. ...|+..+. +++|+.+.+ .+| .++++++++++||+.+..
T Consensus 257 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~------~~r-----~~~~~~~~~~~l~v~~~~ 306 (315)
T 4asc_A 257 TESGELVPTELNDIWRYNEEEKKWEGVLR------EIA-----YAAGATFLPVRLNVLRLT 306 (315)
T ss_dssp CTTSCEEEEEEEEEEEEETTTTEEEEEES------CSS-----CCSSCEEEEEEECGGGSE
T ss_pred cCCccccccccCcEEEecCCCChhhhhcc------CCc-----CccceEEeCCEEEEEEeh
Confidence 1 111222222 899999954 556 367789999999998763
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.96 E-value=7.2e-28 Score=239.01 Aligned_cols=212 Identities=14% Similarity=0.148 Sum_probs=175.1
Q ss_pred CCcEEEeeeC-----------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeec
Q 012060 140 DGSLWIAHGG-----------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 140 ~g~l~va~GG-----------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
++.||+.+|- .+++|| |.. ++|+.+|..+++ ++++++||++|| .++...++.+++||
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG--~~~~~~~~~~~~yd 143 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV----GVIDGHIYAVGG--SHGCIHHNSVERYE 143 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE----EEETTEEEEECC--EETTEECCCEEEEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE----EEECCEEEEEcC--CCCCcccccEEEEC
Confidence 4678855442 188999 998 999999999854 458999999999 66777889999999
Q ss_pred CCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE---
Q 012060 203 VASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI--- 277 (472)
Q Consensus 203 p~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~--- 277 (472)
|.+++|+.+++|+.+|..++ +++++++||+ ||.++ ..++.+++|||.+++ |+.+++|..++.
T Consensus 144 ~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~ 210 (308)
T 1zgk_A 144 PERDEWHLVAPMLTRRIGVG-VAVLNRLLYAVGGFDGTNRLNSAECYYPERNE------------WRMITAMNTIRSGAG 210 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTTE------------EEECCCCSSCCBSCE
T ss_pred CCCCeEeECCCCCccccceE-EEEECCEEEEEeCCCCCCcCceEEEEeCCCCe------------EeeCCCCCCccccce
Confidence 99999999999999999995 8899999999 88776 458999999999944 999998877654
Q ss_pred --ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 --PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 --~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.....++
T Consensus 211 ~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v 280 (308)
T 1zgk_A 211 VCVLHNCIYAAGGYDGQD-QLNSVERYDVETET--WTFVAP--MKHRRSALGI-----TVHQGRIYVLGGYDGHTFLDSV 280 (308)
T ss_dssp EEEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEECCC--CSSCCBSCEE-----EEETTEEEEECCBCSSCBCCEE
T ss_pred EEEECCEEEEEeCCCCCC-ccceEEEEeCCCCc--EEECCC--CCCCccceEE-----EEECCEEEEEcCcCCCcccceE
Confidence 3899999999987653 46799999999999 999998 5889999985 7789999999998765433333
Q ss_pred cccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEE
Q 012060 356 RNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHC 389 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 389 (472)
..+. +++|+.+++ |+.+| .+.++++
T Consensus 281 ~~yd~~~~~W~~~~~----~p~~r-----~~~~~~~ 307 (308)
T 1zgk_A 281 ECYDPDTDTWSEVTR----MTSGR-----SGVGVAV 307 (308)
T ss_dssp EEEETTTTEEEEEEE----CSSCC-----BSCEEEE
T ss_pred EEEcCCCCEEeecCC----CCCCc-----ccceeEe
Confidence 3333 899999998 77888 4666554
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.95 E-value=5.9e-28 Score=240.40 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=177.7
Q ss_pred cCCcEEEeeeC---------c----eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceee
Q 012060 139 DDGSLWIAHGG---------Q----ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSS 199 (472)
Q Consensus 139 ~~g~l~va~GG---------~----Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve 199 (472)
.++.||+.+|- . +++|| |.. ++|+.+|..+++ ++++++||++||....+...++.++
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL----GEVDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEE----EEETTEEEEEEEEBTTTCCEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccce----EEECCEEEEEcCccCCCCcccceEE
Confidence 34788855551 1 78899 998 999999998844 4589999999994223567789999
Q ss_pred eecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccceeE
Q 012060 200 SRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW 276 (472)
Q Consensus 200 ~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~ 276 (472)
+||+.+++|+.+++|+.+|..++ +++.+++||+ ||.+. ..++.+++|||.+++ |+.+++|..++
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r 197 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHN-VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD------------WKDLAPMKTPR 197 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCE-EEEETTEEEEECCEESSSCBCCCEEEEETTTTE------------EEEECCCSSCC
T ss_pred EEeCCCCCEeECCCCCCcccccE-EEEECCEEEEEcCCCCCCCccceEEEEcCCCCE------------EEECCCCCCCc
Confidence 99999999999999999999996 8889999999 87643 358999999999944 99999987765
Q ss_pred E-----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCc-
Q 012060 277 I-----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDI- 350 (472)
Q Consensus 277 ~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~- 350 (472)
. ..++.||+.||.++.. ..+++++|||.+++ |+..++ +..+|.++++ ++.+++||++||.++..
T Consensus 198 ~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~ 267 (318)
T 2woz_A 198 SMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNK--WEVMTE--FPQERSSISL-----VSLAGSLYAIGGFAMIQL 267 (318)
T ss_dssp BSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCC--EEECCC--CSSCCBSCEE-----EEETTEEEEECCBCCBC-
T ss_pred ccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCe--EEECCC--CCCcccceEE-----EEECCEEEEECCeeccCC
Confidence 4 3899999999987653 56799999999999 999988 5788999985 78899999999976421
Q ss_pred --------ccccccccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec
Q 012060 351 --------AMADLRNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR 398 (472)
Q Consensus 351 --------~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~ 398 (472)
...|+-.+. +++|+.+. +.+| .+.++++++++||+.+
T Consensus 268 ~~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~r-----~~~~~~~~~~~iyi~~ 314 (318)
T 2woz_A 268 ESKEFAPTEVNDIWKYEDDKKEWAGML------KEIR-----YASGASCLATRLNLFK 314 (318)
T ss_dssp ---CCBCCBCCCEEEEETTTTEEEEEE------SCCG-----GGTTCEEEEEEEEGGG
T ss_pred CCceeccceeeeEEEEeCCCCEehhhc------cccc-----ccccceeeCCEEEEEE
Confidence 112333222 89999983 3556 4677889999999864
No 11
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=237.93 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=174.4
Q ss_pred CCcEEEeeeC------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCC-CceecceeeeecCCCC
Q 012060 140 DGSLWIAHGG------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS-GIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~GG------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~-g~~~l~sve~ydp~t~ 206 (472)
++.||+.+|. .+++|| |.. ++|+.+|..+++ +++++.||++|| .+ +...++.+++|||.++
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG--~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAA----CAAEGKIYTSGG--SEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEE----EEETTEEEEECC--BBTTBSCCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeE----EEECCEEEEECC--CCCCCcEeeeEEEEeCCCC
Confidence 4678844441 289999 998 999999999854 458999999999 55 6678899999999999
Q ss_pred ccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CC----CceeEEEeCCCcccccccccccCCCcccccccceeEE---
Q 012060 207 HWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HK----ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI--- 277 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~----l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~--- 277 (472)
+|+.+++|+.+|..++ +++++++||+ ||.++ .. ++.+|+|||.+++ |+.+++|..++.
T Consensus 129 ~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~ 195 (306)
T 3ii7_A 129 SWHTKPSMLTQRCSHG-MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET------------WTELCPMIEARKNHG 195 (306)
T ss_dssp EEEEECCCSSCCBSCE-EEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE------------EEEECCCSSCCBSCE
T ss_pred ceEeCCCCcCCcceeE-EEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe------------EEECCCccchhhcce
Confidence 9999999999999995 8899999999 87655 33 8999999999943 999999877654
Q ss_pred --ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 --PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 --~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ +..+|.++++ ++++++||++||.++.....++
T Consensus 196 ~~~~~~~i~v~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~~ 265 (306)
T 3ii7_A 196 LVFVKDKIFAVGGQNGLG-GLDNVEYYDIKLNE--WKMVSP--MPWKGVTVKC-----AAVGSIVYVLAGFQGVGRLGHI 265 (306)
T ss_dssp EEEETTEEEEECCEETTE-EBCCEEEEETTTTE--EEECCC--CSCCBSCCEE-----EEETTEEEEEECBCSSSBCCEE
T ss_pred EEEECCEEEEEeCCCCCC-CCceEEEeeCCCCc--EEECCC--CCCCccceeE-----EEECCEEEEEeCcCCCeeeeeE
Confidence 3899999999987653 56799999999999 999988 5789999984 7889999999998765443333
Q ss_pred cccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEEC
Q 012060 356 RNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYK 391 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~ 391 (472)
..+. +++|..+++ |+.+|. +..++++.
T Consensus 266 ~~yd~~~~~W~~~~~----~~~~r~-----~~~~~~~~ 294 (306)
T 3ii7_A 266 LEYNTETDKWVANSK----VRAFPV-----TSCLICVV 294 (306)
T ss_dssp EEEETTTTEEEEEEE----EECCSC-----TTCEEEEE
T ss_pred EEEcCCCCeEEeCCC----cccccc-----eeEEEEEC
Confidence 3333 899999998 888884 55555543
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.95 E-value=3.3e-27 Score=238.18 Aligned_cols=226 Identities=11% Similarity=0.028 Sum_probs=171.9
Q ss_pred CCcEEEeeeC----ceEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCc-C--CCCceecceeeeecC
Q 012060 140 DGSLWIAHGG----QISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSD-Y--SSGIHFYDLSSSRHV 203 (472)
Q Consensus 140 ~g~l~va~GG----~Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~-~--~~g~~~l~sve~ydp 203 (472)
++.||+ .|| .+++|| |.. ++|+ .+|..++ +++++++||++||. . ..+...++.+++|||
T Consensus 19 ~~~iyv-~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYI-GLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQAT----SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TTEEEE-ECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCE----EEEETTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred CCEEEE-EeCcCCCeEEEEccccCCCCeeECCCCCCCcCccce----EEEECCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence 477885 454 389998 988 8999 8999884 44589999999993 1 113567899999999
Q ss_pred CCCccccCCCCc-CcccceeEEEEeCCeEEE-EecCCC-----------------------------------CCceeEE
Q 012060 204 ASAHWTDPSDPR-IYRATVTAIADSPTTVFS-SLVCPH-----------------------------------KENSVLL 246 (472)
Q Consensus 204 ~t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-Gg~~~~-----------------------------------~l~sVE~ 246 (472)
.+++|+.+++|. .+|..++ +++.+++||+ ||.++. .++.+|+
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHV-TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEE-EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCCcEEECCCCCCcccccce-EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 999999999999 9999985 7779999999 987642 3689999
Q ss_pred EeCCCcccccccccccCCCcccccccceeE------EecCCeEEEEEEeCCCccccceEEEEcC--CCCeeeeEEcCCCC
Q 012060 247 IDKSTLQISSEIGRQSGASSKNMAVGKLTW------IPATGVVLGSAIAWGAFGYSGYVRMWDP--RSGEVVWETNEPGS 318 (472)
Q Consensus 247 YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~------~~~~g~Lyv~Gg~~g~~~~~~sve~yDp--~~~~~vW~~~~~~~ 318 (472)
|||.+++ |+.+++|..++ ...++.||+.||.++.....+.+++||+ .+++ |+..++|.
T Consensus 173 yd~~~~~------------W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~~~~~~~ 238 (357)
T 2uvk_A 173 FDPSTQQ------------WSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WNKLAPVS 238 (357)
T ss_dssp EETTTTE------------EEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE--EEECCCSS
T ss_pred EeCCCCc------------EEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc--EEecCCCC
Confidence 9999943 99998876432 2389999999987654324678999975 8899 99999975
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCCCcc--------------cccccccC-----CCCcEEeecCCCCcccCCCC
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSGDIA--------------MADLRNLG-----EDPWVYMEDKNPSMISSSGN 379 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~--------------~~dl~s~e-----~d~W~~~~~~~~~m~~~~~~ 379 (472)
..+.|.+++ +++.+++||++||.+.... ...+.+++ +++|+.+++ |+.+|
T Consensus 239 ~~~~~~~~~-----~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r-- 307 (357)
T 2uvk_A 239 SPDGVAGGF-----AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGR-- 307 (357)
T ss_dssp TTTCCBSCE-----EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCC--
T ss_pred CCcccccce-----EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCc--
Confidence 456677776 4788999999999643210 11122333 899999998 77888
Q ss_pred CCCcCeEEEEECCEEEEecC
Q 012060 380 NNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 380 ~~~~~~~~~~~~g~l~~~~g 399 (472)
.+..+++++++||+.||
T Consensus 308 ---~~~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 308 ---AYGVSLPWNNSLLIIGG 324 (357)
T ss_dssp ---BSSEEEEETTEEEEEEE
T ss_pred ---ccceeEEeCCEEEEEee
Confidence 46778899999999999
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=231.75 Aligned_cols=213 Identities=13% Similarity=0.096 Sum_probs=175.0
Q ss_pred CCcEEEeeeC-------ceEEee--------ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecC
Q 012060 140 DGSLWIAHGG-------QISVYD--------WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHV 203 (472)
Q Consensus 140 ~g~l~va~GG-------~Ve~YD--------W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp 203 (472)
++.+|+.+|- .+++|| |.. ++++.+|..+++ ++++++||++|| ..+...++.+++||+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~----~~~~~~lyv~GG--~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA----TTLGDMIYVSGG--FDGSRRHTSMERYDP 135 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE----EEETTEEEEECC--BCSSCBCCEEEEEET
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE----EEECCEEEEEcc--cCCCcccceEEEEcC
Confidence 4678854441 289999 888 999999999854 458999999999 667677899999999
Q ss_pred CCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE----
Q 012060 204 ASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI---- 277 (472)
Q Consensus 204 ~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~---- 277 (472)
.+++|+.+++|+.+|..++ +++++++||+ ||.++ ..++.+++|||.+++ |+.+++|..++.
T Consensus 136 ~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~ 202 (301)
T 2vpj_A 136 NIDQWSMLGDMQTAREGAG-LVVASGVIYCLGGYDGLNILNSVEKYDPHTGH------------WTNVTPMATKRSGAGV 202 (301)
T ss_dssp TTTEEEEEEECSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTTE------------EEEECCCSSCCBSCEE
T ss_pred CCCeEEECCCCCCCcccce-EEEECCEEEEECCCCCCcccceEEEEeCCCCc------------EEeCCCCCcccccceE
Confidence 9999999999999999995 8899999999 88776 458999999999943 999998877654
Q ss_pred -ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 278 -PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 278 -~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
..++.||+.||.++.. .++++++|||++++ |+..++ |..+|.++++ ++++++||++||.++.....++.
T Consensus 203 ~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v~ 272 (301)
T 2vpj_A 203 ALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDS--WTTVTS--MTTPRCYVGA-----TVLRGRLYAIAGYDGNSLLSSIE 272 (301)
T ss_dssp EEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBEEEEE
T ss_pred EEECCEEEEEeCCCCCc-ccceEEEEeCCCCc--EEECCC--CCCcccceeE-----EEECCEEEEEcCcCCCcccccEE
Confidence 3899999999987653 47799999999999 999988 5788999984 77899999999987653322333
Q ss_pred ccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEE
Q 012060 357 NLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCY 390 (472)
Q Consensus 357 s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~ 390 (472)
.+. +++|..+++ |+.+| ++.+++++
T Consensus 273 ~yd~~~~~W~~~~~----~~~~r-----~~~~~~~~ 299 (301)
T 2vpj_A 273 CYDPIIDSWEVVTS----MGTQR-----CDAGVCVL 299 (301)
T ss_dssp EEETTTTEEEEEEE----EEEEE-----ESCEEEEE
T ss_pred EEcCCCCeEEEcCC----CCccc-----ccceEEEe
Confidence 222 899999998 88888 46676665
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.93 E-value=2.6e-25 Score=224.23 Aligned_cols=203 Identities=11% Similarity=0.023 Sum_probs=156.1
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC--CCccccCCCCc-CcccceeEEEEeCCeEEE-E
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTDPSDPR-IYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-G 234 (472)
++||.+|.++. ++++++.||++|| .++ +.+++||+. +++|..+++|+ .+|..++ +++++++||+ |
T Consensus 4 ~~lP~~r~~~~----~~~~~~~iyv~GG--~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~-~~~~~~~lyv~G 72 (357)
T 2uvk_A 4 PETPVPFKSGT----GAIDNDTVYIGLG--SAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQAT-SAFIDGNLYVFG 72 (357)
T ss_dssp CCCSSCCCSCE----EEEETTEEEEECG--GGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCE-EEEETTEEEEEC
T ss_pred CCCCccccceE----EEEECCEEEEEeC--cCC----CeEEEEccccCCCCeeECCCCCCCcCccce-EEEECCEEEEEc
Confidence 78899998763 3457999999999 544 478999998 59999999999 8999995 8999999999 8
Q ss_pred ec-C---C--CCCceeEEEeCCCcccccccccccCCCcccccccc-eeEE-----ecCCeEEEEEEeCCCc---------
Q 012060 235 LV-C---P--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK-LTWI-----PATGVVLGSAIAWGAF--------- 293 (472)
Q Consensus 235 g~-~---~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~-~~~~-----~~~g~Lyv~Gg~~g~~--------- 293 (472)
|. + + ..++.+++|||.+++ |+.+++|. .+|. ..+++||+.||.++..
T Consensus 73 G~~~~~~~~~~~~~~v~~yd~~~~~------------W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 140 (357)
T 2uvk_A 73 GIGKNSEGLTQVFNDVHKYNPKTNS------------WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLN 140 (357)
T ss_dssp CEEECTTSCEEECCCEEEEETTTTE------------EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCCCCccceeeccEEEEeCCCCc------------EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchh
Confidence 86 2 2 248999999999944 99999987 5542 3899999999976431
Q ss_pred ------------------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 294 ------------------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 294 ------------------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
..++++++|||.+++ |+..++| ...+|.++++ ++.+++||++||.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~-p~~~~~~~~~-----~~~~~~iyv~GG~~~~ 212 (357)
T 2uvk_A 141 EAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ--WSYAGES-PWYGTAGAAV-----VNKGDKTWLINGEAKP 212 (357)
T ss_dssp HHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE--EEEEEEC-SSCCCBSCEE-----EEETTEEEEECCEEET
T ss_pred hcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCc--EEECCCC-CCCCcccccE-----EEECCEEEEEeeecCC
Confidence 135799999999999 9999885 2234555774 7889999999997643
Q ss_pred c-cccccccc----CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 350 I-AMADLRNL----GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 350 ~-~~~dl~s~----e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
. ...++..+ ++++|+.+++ |+.+|.. ....+++++++||+.+|
T Consensus 213 ~~~~~~v~~~d~d~~~~~W~~~~~----~~~~~~~---~~~~~~~~~~~iyv~GG 260 (357)
T 2uvk_A 213 GLRTDAVFELDFTGNNLKWNKLAP----VSSPDGV---AGGFAGISNDSLIFAGG 260 (357)
T ss_dssp TEECCCEEEEECC---CEEEECCC----SSTTTCC---BSCEEEEETTEEEEECC
T ss_pred CcccCceEEEEecCCCCcEEecCC----CCCCccc---ccceEEEECCEEEEEcC
Confidence 1 11123222 4789999998 5444421 46778999999999998
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.92 E-value=2.2e-24 Score=236.44 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=174.1
Q ss_pred CCcEEEeee------C-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeee
Q 012060 140 DGSLWIAHG------G-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSS 200 (472)
Q Consensus 140 ~g~l~va~G------G-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ 200 (472)
++.||+.+| | .+++|| |.. +.|+.+|..++.. .++..+++||++|| +++ +.+++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~-~~~~~~g~lyv~GG--~~~----~~v~~ 269 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG-ISMDGNGQIVVTGG--NDA----KKTSL 269 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE-EEECTTSCEEEECS--SST----TCEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccc-ccCCCCCCEEEeCC--CCC----CceEE
Confidence 578886554 1 278899 988 8888888777532 12246899999999 444 27999
Q ss_pred ecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-Ee-cCC-CCCceeEEEeCCCcccccccccccCCCcccc-----cc
Q 012060 201 RHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SL-VCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNM-----AV 271 (472)
Q Consensus 201 ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg-~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-----~~ 271 (472)
|||.+++|+.+++|+.+|..++ ++++ +++||+ || .++ ..++++|+|||.+++ |+.+ +|
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s-~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~------------W~~~~~~~~~p 336 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQS-SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT------------WTSLPNAKVNP 336 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCE-EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE------------EEEETTSCSGG
T ss_pred ecCcCCceeECCCCCccccccc-eEEecCCeEEEEeCcccCCcccccceEeCCCCCc------------ceeCCCccccc
Confidence 9999999999999999999995 8888 999999 88 444 458999999999843 4443 11
Q ss_pred ccee-------------------------------------------------------------EE----ecCCeEEEE
Q 012060 272 GKLT-------------------------------------------------------------WI----PATGVVLGS 286 (472)
Q Consensus 272 m~~~-------------------------------------------------------------~~----~~~g~Lyv~ 286 (472)
|... .. ..+++||++
T Consensus 337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 1110 11 248999999
Q ss_pred EEeCCCc--cccc---eEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec-CCeEEEEcccCCCccc---ccccc
Q 012060 287 AIAWGAF--GYSG---YVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD-ELTLFKICSKSGDIAM---ADLRN 357 (472)
Q Consensus 287 Gg~~g~~--~~~~---sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~-~~~iy~vGg~~g~~~~---~dl~s 357 (472)
||.++.. ..++ .|++|||.+++ |+......|..+|.++++ +++ +++||++||.+....+ ..+..
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~-----~~l~~g~i~v~GG~~~~~~~~~~~~~~~ 489 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTS-----VVLPDGSTFITGGQRRGIPFEDSTPVFT 489 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEE-----EECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCe-----EECCCCCEEEECCcccCcCcCCCCcccc
Confidence 9864321 1233 89999999999 998872226899999984 566 9999999997632110 11233
Q ss_pred cC-----CCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecCC----------eEEEeecccc
Q 012060 358 LG-----EDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRGG----------SLEVWSRVRE 410 (472)
Q Consensus 358 ~e-----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g~----------~~~v~~~~~~ 410 (472)
++ +++|+.+++ |+.+| .+...+++ +|+||+.||+ .+|+|+++-+
T Consensus 490 v~~ydp~t~~W~~~~~----~~~~R-----~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Ppyl 550 (656)
T 1k3i_A 490 PEIYVPEQDTFYKQNP----NSIVR-----VYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL 550 (656)
T ss_dssp CEEEEGGGTEEEECCC----CSSCC-----CTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred eEEEcCCCCceeecCC----CCCcc-----ccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeChhh
Confidence 33 899999997 78888 47888888 9999999995 5788888755
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.90 E-value=2.7e-23 Score=230.01 Aligned_cols=230 Identities=9% Similarity=0.012 Sum_probs=167.5
Q ss_pred CCcEEEeeeCc-------eEEee-----ccc-C-C-----CCCccccccccceeeee--CCeEEEEcCcCCCCc-eecce
Q 012060 140 DGSLWIAHGGQ-------ISVYD-----WNL-S-H-----SVTVRTHLDNITSIRHV--WSDVAAVGSDYSSGI-HFYDL 197 (472)
Q Consensus 140 ~g~l~va~GG~-------Ve~YD-----W~~-~-~-----m~~~R~~~~~v~~v~~l--~~~lYavGG~~~~g~-~~l~s 197 (472)
++.||+ +||. +++|| |.. + + |+.+|..|+ ++++ ++.||++|| .++. ..++.
T Consensus 397 ~~~iyv-~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs----~~~~~~~~~lyv~GG--~~~~~~~~~d 469 (695)
T 2zwa_A 397 GNDVFY-MGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT----FTTISRNNQLLLIGG--RKAPHQGLSD 469 (695)
T ss_dssp SSCEEE-ECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE----EEEETTTTEEEEECC--BSSTTCBCCC
T ss_pred CCEEEE-ECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE----EEEEccCCEEEEEcC--CCCCCCcccc
Confidence 467885 4552 89999 987 6 5 789999984 4458 999999999 4443 37899
Q ss_pred eeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc---c
Q 012060 198 SSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV---G 272 (472)
Q Consensus 198 ve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~---m 272 (472)
+++||+.+++|+.+++|+.+|..++ ++++ +++||+ ||.++.. .+|+|||.+++ |+.+++ |
T Consensus 470 v~~yd~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~------------W~~~~~~g~~ 534 (695)
T 2zwa_A 470 NWIFDMKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGP--AMLLYNVTEEI------------FKDVTPKDEF 534 (695)
T ss_dssp CEEEETTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSC--SEEEEETTTTE------------EEECCCSSGG
T ss_pred EEEEeCCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCC--CEEEEECCCCc------------eEEccCCCCC
Confidence 9999999999999999999999996 7776 999999 9887644 99999999943 999987 5
Q ss_pred ceeEEe-----cC---CeEEEEEEeCCCc-cccceEEEEcCCCCe----eeeEEcCCCCCCCCcccccccceeeeecC-C
Q 012060 273 KLTWIP-----AT---GVVLGSAIAWGAF-GYSGYVRMWDPRSGE----VVWETNEPGSGRSARFGDSFADVDVDVDE-L 338 (472)
Q Consensus 273 ~~~~~~-----~~---g~Lyv~Gg~~g~~-~~~~sve~yDp~~~~----~vW~~~~~~~~~~~R~~~~~~d~~v~~~~-~ 338 (472)
..++.. ++ +.||+.||.+... ..++++++|||.+++ +.|+...+| +..+|.++++ ++++ +
T Consensus 535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-p~~~R~~~~~-----~~~~~~ 608 (695)
T 2zwa_A 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH-PLFQRYGSQI-----KYITPR 608 (695)
T ss_dssp GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC-GGGCCBSCEE-----EEEETT
T ss_pred CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC-CCCCcccceE-----EEeCCC
Confidence 555432 34 8999999974321 257899999999998 235666653 3588999985 6778 9
Q ss_pred eEEEEcccCCCcc---cccccccC--CCCcEEeecCCCCc---ccCCCCCCCcCeEEEEECC-EEEEecCCeE
Q 012060 339 TLFKICSKSGDIA---MADLRNLG--EDPWVYMEDKNPSM---ISSSGNNNGENKLIHCYKN-QVFVGRGGSL 402 (472)
Q Consensus 339 ~iy~vGg~~g~~~---~~dl~s~e--~d~W~~~~~~~~~m---~~~~~~~~~~~~~~~~~~g-~l~~~~g~~~ 402 (472)
+||++||.++... ..++..+. +++|+.+. .+... ..+.. .+..++++++ +||+.||+..
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~----~gh~~~~~~~g~i~v~GGg~~ 676 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLML----AGFSLVSTSMGTIHIIGGGAT 676 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCC----SSCEEECC---CEEEECCEEE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccc----eeeeEEEeCCCEEEEEeCCcc
Confidence 9999999775432 11232222 89999543 11111 00111 3566666665 9999999765
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.88 E-value=2.6e-22 Score=222.09 Aligned_cols=212 Identities=8% Similarity=-0.067 Sum_probs=166.1
Q ss_pred ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC-C-----CcCcccceeEEEEe-
Q 012060 156 WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS-D-----PRIYRATVTAIADS- 227 (472)
Q Consensus 156 W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a-~-----m~~~R~~~~ava~l- 227 (472)
|.. +..+.+|.++ ++++++.||++|| .++ ..++.+++|||.+++|+.++ + |+.+|.+++ ++++
T Consensus 379 ~~~~~~~p~rr~g~-----~~~~~~~iyv~GG--~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs-~~~~~ 449 (695)
T 2zwa_A 379 LLECECPINRKFGD-----VDVAGNDVFYMGG--SNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT-FTTIS 449 (695)
T ss_dssp EEECCCTTCCBSCE-----EEECSSCEEEECC--BSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE-EEEET
T ss_pred EeccCCCCCCceeE-----EEEECCEEEEECC--CCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE-EEEEc
Confidence 444 4555555543 2238999999999 666 78899999999999999988 5 899999996 8889
Q ss_pred -CCeEEE-EecCC-C-CCceeEEEeCCCcccccccccccCCCcccccccceeEEe-----c-CCeEEEEEEeCCCccccc
Q 012060 228 -PTTVFS-SLVCP-H-KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-----A-TGVVLGSAIAWGAFGYSG 297 (472)
Q Consensus 228 -~g~IYA-Gg~~~-~-~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-----~-~g~Lyv~Gg~~g~~~~~~ 297 (472)
+++||+ ||.+. . .++++++||+.+++ |+.+++|..+|.. + +++||+.||.++..
T Consensus 450 ~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~------------W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---- 513 (695)
T 2zwa_A 450 RNNQLLLIGGRKAPHQGLSDNWIFDMKTRE------------WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---- 513 (695)
T ss_dssp TTTEEEEECCBSSTTCBCCCCEEEETTTTE------------EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----
T ss_pred cCCEEEEEcCCCCCCCccccEEEEeCCCCc------------EEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----
Confidence 999999 88776 3 58999999999944 9999998877652 4 99999999976652
Q ss_pred eEEEEcCCCCeeeeEEcCCC-CCCCCcccccccceeeeecC---CeEEEEcccCCC--cccccccccC--CCC------c
Q 012060 298 YVRMWDPRSGEVVWETNEPG-SGRSARFGDSFADVDVDVDE---LTLFKICSKSGD--IAMADLRNLG--EDP------W 363 (472)
Q Consensus 298 sve~yDp~~~~~vW~~~~~~-~~~~~R~~~~~~d~~v~~~~---~~iy~vGg~~g~--~~~~dl~s~e--~d~------W 363 (472)
++++|||.+++ |+..++. .+..+|.+|+. ++++ ++||++||.+.+ ....++..+. +++ |
T Consensus 514 ~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a-----~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W 586 (695)
T 2zwa_A 514 AMLLYNVTEEI--FKDVTPKDEFFQNSLVSAG-----LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITV 586 (695)
T ss_dssp SEEEEETTTTE--EEECCCSSGGGGSCCBSCE-----EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEE
T ss_pred CEEEEECCCCc--eEEccCCCCCCCcccceeE-----EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEE
Confidence 89999999999 9999873 25789999983 5545 899999997533 2222333333 888 8
Q ss_pred EEeecCCCCc-ccCCCCCCCcCeEEEEEC-CEEEEecC----------CeEEEeecc
Q 012060 364 VYMEDKNPSM-ISSSGNNNGENKLIHCYK-NQVFVGRG----------GSLEVWSRV 408 (472)
Q Consensus 364 ~~~~~~~~~m-~~~~~~~~~~~~~~~~~~-g~l~~~~g----------~~~~v~~~~ 408 (472)
+.+.+ | ..+| .+..+++++ |+||+.|| .+|++|+..
T Consensus 587 ~~~~~----~p~~~R-----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 587 IKKLQ----HPLFQR-----YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EEEEE----CGGGCC-----BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EEcCC----CCCCCc-----ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 88887 4 3667 578889999 99999998 347777764
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.84 E-value=5.4e-21 Score=209.47 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=154.8
Q ss_pred eEEee-----ccc-CCCCCccccccccceeeee--CCeEEEEcCcCCCCc------eecceeeeecCCCCccccCCCCcC
Q 012060 151 ISVYD-----WNL-SHSVTVRTHLDNITSIRHV--WSDVAAVGSDYSSGI------HFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 151 Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l--~~~lYavGG~~~~g~------~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
++.|| |.. +++|. ..++ ++++ +++||++||. +.. ..++.+++|||.+++|..+++|+.
T Consensus 168 ~~~~dp~~~~W~~~~~~P~--~~~~----~av~~~~g~l~v~GG~--~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~ 239 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI--VPAA----AAIEPTSGRVLMWSSY--RNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT 239 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS--CCSE----EEEETTTTEEEEEEEC--CCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC
T ss_pred cccCCCCCCeeeeeccCCC--Ccee----EEEEecCCEEEEEecc--cccccccCCCCeEEEEEEeCCCCcEEeCcccCC
Confidence 66777 987 77755 3332 2345 9999999994 321 234578999999999999999988
Q ss_pred ccccee-EEE-EeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ec-CCeEEEEE
Q 012060 217 YRATVT-AIA-DSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PA-TGVVLGSA 287 (472)
Q Consensus 217 ~R~~~~-ava-~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~-~g~Lyv~G 287 (472)
+|..++ +++ ..+++||+ ||.+. +++++|||.+++ |+.+++|..+|. .+ +|+|||+|
T Consensus 240 ~~~~~~~~~~~~~~g~lyv~GG~~~---~~v~~yd~~t~~------------W~~~~~~~~~R~~~s~~~~~dg~iyv~G 304 (656)
T 1k3i_A 240 KHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDS------------WIPGPDMQVARGYQSSATMSDGRVFTIG 304 (656)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTE------------EEECCCCSSCCSSCEEEECTTSCEEEEC
T ss_pred CCCCccccccCCCCCCEEEeCCCCC---CceEEecCcCCc------------eeECCCCCccccccceEEecCCeEEEEe
Confidence 886653 233 36899999 87654 389999999943 999999987764 25 99999999
Q ss_pred E-eCCCccccceEEEEcCCCCeeeeEEc-----CCCCCCCCcccc-----------------------------------
Q 012060 288 I-AWGAFGYSGYVRMWDPRSGEVVWETN-----EPGSGRSARFGD----------------------------------- 326 (472)
Q Consensus 288 g-~~g~~~~~~sve~yDp~~~~~vW~~~-----~~~~~~~~R~~~----------------------------------- 326 (472)
| .++.. .++++|+|||.+++ |+.. .|| ...|...
T Consensus 305 G~~~~~~-~~~~~e~yd~~t~~--W~~~~~~~~~p~--~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~ 379 (656)
T 1k3i_A 305 GSWSGGV-FEKNGEVYSPSSKT--WTSLPNAKVNPM--LTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 379 (656)
T ss_dssp CCCCSSS-CCCCEEEEETTTTE--EEEETTSCSGGG--CCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred CcccCCc-ccccceEeCCCCCc--ceeCCCcccccc--ccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCc
Confidence 9 44433 56799999999999 9997 443 2222100
Q ss_pred ------------------cccceeee--ecCCeEEEEcccCC---CcccccccccC-----CCCcEEee--cCCCCcccC
Q 012060 327 ------------------SFADVDVD--VDELTLFKICSKSG---DIAMADLRNLG-----EDPWVYME--DKNPSMISS 376 (472)
Q Consensus 327 ------------------~~~d~~v~--~~~~~iy~vGg~~g---~~~~~dl~s~e-----~d~W~~~~--~~~~~m~~~ 376 (472)
..+-.+++ ..+++||++||.++ .....+..+++ +++|+.+. + |+.+
T Consensus 380 ~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----mp~~ 455 (656)
T 1k3i_A 380 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG----LYFA 455 (656)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC----CSSC
T ss_pred ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC----CCCC
Confidence 00001111 35899999999643 11111111332 88999987 5 8888
Q ss_pred CCCCCCcCeEEEEE-CCEEEEecC-------------CeEEEeecc
Q 012060 377 SGNNNGENKLIHCY-KNQVFVGRG-------------GSLEVWSRV 408 (472)
Q Consensus 377 ~~~~~~~~~~~~~~-~g~l~~~~g-------------~~~~v~~~~ 408 (472)
| .....+++ +|+||+.+| ..+|+|+..
T Consensus 456 R-----~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 456 R-----TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp C-----BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred c-----ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 8 46776776 999999998 357888874
No 19
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=99.83 E-value=8.5e-21 Score=161.93 Aligned_cols=93 Identities=35% Similarity=0.568 Sum_probs=82.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC------CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
+.++.|+|||||++|.|+++||++ +|+++|.+||... .++++++||||||.+|++||+|+|+|+++++ ...+
T Consensus 3 ~~~~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p-~~~~ 80 (107)
T 3drz_A 3 SVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVIN-KDLA 80 (107)
T ss_dssp --CCEEEEEETTEEEEEEHHHHTS-STTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCC-TTSC
T ss_pred CCCCEEEEEECCEEEEECHHHHhc-CCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCC-CCCC
Confidence 357899999999999999999999 8999999999753 2467899999999999999999999999976 4577
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
...|++||.||+|.++++.|.
T Consensus 81 ~~~l~~Ea~fy~l~~L~~~l~ 101 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLIKLVK 101 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 889999999999999999885
No 20
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=99.82 E-value=1.5e-20 Score=162.18 Aligned_cols=92 Identities=28% Similarity=0.446 Sum_probs=82.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.++.|+|||||++|.|+++||++ +|+++|.+||+.. .++.++|||||||.+|++||+|+|+|+|+++ .+.+...|
T Consensus 3 ~~~~V~LNVGG~~f~T~~~TL~~-~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p-~~~~~~~~ 80 (115)
T 3kvt_A 3 AENRVIINVGGIRHETYKATLKK-IPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYP-TDVCGPLF 80 (115)
T ss_dssp -CCEEEEEETTEEEEEEHHHHTT-SCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCC-SSSCHHHH
T ss_pred CCCEEEEEECCEEEEecHHHHhc-CCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCC-CcccHHHH
Confidence 46799999999999999999999 8999999999753 4678999999999999999999999999986 45788999
Q ss_pred HhhhhhcCcchHH-hhhc
Q 012060 91 ADEALYYGIDSQL-KSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~-~~c~ 107 (472)
++||+||+|.+.. ..||
T Consensus 81 ~~Ea~fy~i~~~~l~~CC 98 (115)
T 3kvt_A 81 EEELEFWGLDSNQVEPCC 98 (115)
T ss_dssp HHHHHHHTCCGGGBCGGG
T ss_pred HHHHHHhCCChHHHHHHH
Confidence 9999999999955 5677
No 21
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=99.80 E-value=4.7e-20 Score=155.19 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=77.7
Q ss_pred CcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhcccc-CcccCCCCCcchHHHH
Q 012060 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRS-NRLPSTASRFSKQELA 91 (472)
Q Consensus 16 ~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrt-g~l~~~~~~~~v~~Ll 91 (472)
+.|+|||||++|.|+++||++ +|+++|.+|++.. .++++++||||||.+|++||+|+|| |+++++ ++.++..|+
T Consensus 1 ~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p-~~~~~~~~~ 78 (100)
T 1t1d_A 1 ERVVINVSGLRFETQLKTLNQ-FPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRP-VNVPLDVFS 78 (100)
T ss_dssp CEEEEEETTEEEEEEHHHHHT-STTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCC-TTSCHHHHH
T ss_pred CEEEEEECCEEEEeeHHHHhc-CCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCcccCC-CCCCHHHHH
Confidence 479999999999999999999 8999999998642 4578899999999999999999999 999976 457899999
Q ss_pred hhhhhcCcchHH
Q 012060 92 DEALYYGIDSQL 103 (472)
Q Consensus 92 ~eA~~~ql~~l~ 103 (472)
+||+||+|.+++
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999999965
No 22
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=99.79 E-value=1.3e-19 Score=158.42 Aligned_cols=95 Identities=27% Similarity=0.523 Sum_probs=80.0
Q ss_pred CCCCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 10 PDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 10 ~~~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
+.++.++.|+|||||++|.|+++||++ +|+++|.+. ... .+++++|||||||.+|++||+|||+|+|+++ .+.+
T Consensus 7 ~~~~~~~~V~LNVGG~~F~t~~~TL~~-~p~S~L~~~-~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p-~~~~ 83 (124)
T 1s1g_A 7 KNKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGST-EKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYP-RYEC 83 (124)
T ss_dssp -----CCEEEEEETTEEEEEEHHHHTT-STTSSTTSS-GGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCC-TTSC
T ss_pred CCCCCCCEEEEEeCCEEEEEeHHHHhc-CCCceeccc-CCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCCC-CCcC
Confidence 445688999999999999999999999 899999882 111 4678999999999999999999999999976 4468
Q ss_pred hHHHHhhhhhcCcchH-Hhhhc
Q 012060 87 KQELADEALYYGIDSQ-LKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l-~~~c~ 107 (472)
+..|++||+||+|.++ ++.||
T Consensus 84 ~~~l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 84 ISAYDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp HHHHHHHHHHTTCCGGGBCHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999997 47787
No 23
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=99.77 E-value=3.7e-19 Score=158.47 Aligned_cols=95 Identities=27% Similarity=0.503 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 11 DRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 11 ~~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.+..++.|+|||||++|.|+++||++ +|+++|.+.-... .+++++|||||||.+|++||||||+|+|+++ .+.++.
T Consensus 30 ~~~~~~~V~LNVGG~~F~T~~~TL~~-~P~S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p-~~~~~~ 107 (140)
T 2nz0_B 30 NKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYP-RYECIS 107 (140)
T ss_dssp CTTCCCEEEEEETTEEEEEEHHHHHT-CTTSTTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBCCC-TTSCHH
T ss_pred cCCCCCEEEEEECCEEEEeeHHHHhc-CCCeeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCC-CCcCHH
Confidence 34578899999999999999999999 8999999832111 4678999999999999999999999999976 457899
Q ss_pred HHHhhhhhcCcchH-Hhhhc
Q 012060 89 ELADEALYYGIDSQ-LKSAM 107 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l-~~~c~ 107 (472)
.|++||+||+|.++ ++.||
T Consensus 108 ~l~eEa~fy~i~~l~l~~CC 127 (140)
T 2nz0_B 108 AYDDELAFYGILPEIIGDCC 127 (140)
T ss_dssp HHHHHHHHHTCCGGGBCTTT
T ss_pred HHHHHHHHcCCChHHHHHHH
Confidence 99999999999997 57777
No 24
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=99.77 E-value=2.6e-19 Score=152.13 Aligned_cols=89 Identities=27% Similarity=0.458 Sum_probs=77.5
Q ss_pred cEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHHHhhh
Q 012060 17 RVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQELADEA 94 (472)
Q Consensus 17 ~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~eA 94 (472)
.|+|||||++|.|+++||++ +|+++|.++-... .++++++||||||.+|++||+|+|+|+|+++ .+.++..|++||
T Consensus 1 ~V~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~p-~~~~~~~l~~Ea 78 (105)
T 1nn7_A 1 LIVLNVSGTRFQTWQDTLER-YPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYP-RHECISAYDEEL 78 (105)
T ss_dssp CEEEEETTEEEEECHHHHHT-SCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCC-TTSCHHHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhc-CCCccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCCCC-CCcCHHHHHHHH
Confidence 48999999999999999999 8999999842211 3577899999999999999999999999976 446889999999
Q ss_pred hhcCcchHH-hhhc
Q 012060 95 LYYGIDSQL-KSAM 107 (472)
Q Consensus 95 ~~~ql~~l~-~~c~ 107 (472)
+||+|.+++ +.||
T Consensus 79 ~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 79 AFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHTCCSCCBCHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 999999974 6777
No 25
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=99.76 E-value=6.7e-19 Score=164.90 Aligned_cols=93 Identities=35% Similarity=0.568 Sum_probs=84.2
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC------CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
..++.|+|||||++|.|+++||++ +|+++|.+||... .++.++|||||||.+|++||+|||+|+|+++ +..+
T Consensus 9 ~~~~~V~LNVGG~~F~Tt~sTL~r-~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP-~~~~ 86 (202)
T 3drx_A 9 SVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVIN-KDLA 86 (202)
T ss_dssp CCCCEEEEEETTEEEEEETTGGGS-CTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCC-TTSC
T ss_pred CCCCEEEEEECCEEEEEeHHHHhC-CCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCCC-CCCC
Confidence 467899999999999999999999 8999999999753 2467899999999999999999999999986 4577
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
...|++||.||+|.++++.|.
T Consensus 87 ~~~l~eEA~FygL~~Lv~~l~ 107 (202)
T 3drx_A 87 EEGVLEEAEFYNITSLIKLVK 107 (202)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCcHHHHHHHH
Confidence 889999999999999999986
No 26
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.55 E-value=3.7e-15 Score=131.91 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=84.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||.....+..++.+ +.+++.|+.+|+|+|||++.++. .++.+|+
T Consensus 35 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~--~~v~~ll 110 (138)
T 2z8h_A 35 VLCDVTVLVEGQRFRAHRSVLAAC--SSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSK--DNVDEVC 110 (138)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCCT--TTHHHHH
T ss_pred CCcCeEEEECCEEEechHHHHHHc--CHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccCH--HHHHHHH
Confidence 346999999999999999999998 88999999865333445655 68999999999999999999876 8999999
Q ss_pred hhhhhcCcchHHhhhc--CCCCCCCC
Q 012060 92 DEALYYGIDSQLKSAM--SPPPLQGI 115 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~--l~~~l~~l 115 (472)
.+|.+||++.+++.|+ +..++...
T Consensus 111 ~~A~~~~i~~L~~~C~~~l~~~l~~s 136 (138)
T 2z8h_A 111 RCVEFLSVHNIEESCFQFLKFKFLDS 136 (138)
T ss_dssp HHHHHHTCGGGHHHHHHHTTCCCSCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999998 66666543
No 27
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.53 E-value=5.3e-15 Score=130.60 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=78.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|+|+.|.+||.+|+++ |+||++||.... +.+|.+ |.+|++|+.+|+|+|||++.++. .++.+|+.
T Consensus 24 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~--~~v~~ll~ 97 (135)
T 2yy9_A 24 QYCDATLDVGGLVFKAHWSVLACC--SHFFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFYTGHLALTS--GNRDQVLL 97 (135)
T ss_dssp TTCCEEEEETTEEEEECHHHHHHH--CHHHHHTCC------CCEEECGGGHHHHHHHHHHHHHSCCCCCT--TTHHHHHH
T ss_pred CCcceEEEECCEEEehHHHHHHHh--CHHHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHhCCCCCCCH--HHHHHHHH
Confidence 345999999999999999999998 889999998532 566765 89999999999999999999876 89999999
Q ss_pred hhhhcCcchHHhhhc--CCCCCC
Q 012060 93 EALYYGIDSQLKSAM--SPPPLQ 113 (472)
Q Consensus 93 eA~~~ql~~l~~~c~--l~~~l~ 113 (472)
+|++|||+.+++.|+ +...+.
T Consensus 98 ~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 98 AAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHTTCHHHHHHHHHCCC----
T ss_pred HHHHhCcHHHHHHHHHHHHHhcc
Confidence 999999999999998 444444
No 28
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.52 E-value=7.8e-15 Score=156.92 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=79.4
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhcccc-CcccCCCCCcchH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRS-NRLPSTASRFSKQ 88 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrt-g~l~~~~~~~~v~ 88 (472)
..++.|+|||||++|+|+++||++ +|+++|.+|+... .+++++|||||||.+|++||+|+|| |+++++ ++.+.+
T Consensus 49 ~~~~~v~lNVgG~~f~t~~~tL~~-~p~s~l~~~~~~~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p-~~~~~~ 126 (514)
T 2r9r_B 49 ESSERVVINISGLRFETQLKTLAQ-FPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRP-VNVPLD 126 (514)
T ss_dssp --CCEEEEEETTEEEEEEHHHHTT-STTSTTTCHHHHGGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCC-TTSCHH
T ss_pred CCCCEEEEEeCCEEEEecHHHHhc-CCCCcccccccCCcccCCCCCCEEEcCChHHHHHHHHHHhcCCccccC-CcccHH
Confidence 457899999999999999999999 8999999998643 4678999999999999999999999 999975 557899
Q ss_pred HHHhhhhhcCcchHH
Q 012060 89 ELADEALYYGIDSQL 103 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~ 103 (472)
.|++||+||+|.+..
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 999999999999965
No 29
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.51 E-value=9.6e-15 Score=125.98 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=79.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+... +.++.+ |.+|++|+.+|+|+|||++.+++ .++++|+.
T Consensus 23 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~--~~v~~ll~ 96 (119)
T 3b84_A 23 QYCDATLDVGGLVFKAHWSVLACC--SHFFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFFYTGHLALTS--GNRDQVLL 96 (119)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTTT--CCCEEECGGGHHHHHHHHHHHHHSCCCCCT--TTHHHHHH
T ss_pred CCcceEEEECCEEEEeeHHHHhhc--CHHHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHHcCCCCccCH--HHHHHHHH
Confidence 346999999999999999999998 889999998532 567765 89999999999999999999876 88999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
+|++||++.+.+.|.
T Consensus 97 ~A~~~~i~~L~~~C~ 111 (119)
T 3b84_A 97 AARELRVPEAVELCQ 111 (119)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCcHHHHHHHH
Confidence 999999999999997
No 30
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.50 E-value=7.5e-15 Score=127.47 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=80.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-c-CChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-D-RDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-D-rdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||.....+..++.+ | .+++.|+.+|+|+|||++.++. .++.+|+
T Consensus 31 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~--~~v~~ll 106 (125)
T 3ohu_A 31 ILCDVTLIVERKEFRAHRAVLAAC--SEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSR--ENIREVI 106 (125)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--BHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECT--TTHHHHH
T ss_pred CccceEEEECCEEEechHHHHHHc--CHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECH--HHHHHHH
Confidence 345999999999999999999998 88999999875444556665 6 9999999999999999999876 8999999
Q ss_pred hhhhhcCcchHHhhhc
Q 012060 92 DEALYYGIDSQLKSAM 107 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~ 107 (472)
.+|.+||+..+++.|+
T Consensus 107 ~~A~~l~i~~L~~~C~ 122 (125)
T 3ohu_A 107 RCAEFLRMHNLEDSCF 122 (125)
T ss_dssp HHHHHHTBSSCTTSSC
T ss_pred HHHHHhCCHHHHHHHH
Confidence 9999999999999996
No 31
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.49 E-value=1e-14 Score=125.58 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++. ++...++.+ |.+|+.|+.+|+|+|||++.++. .++.+|
T Consensus 24 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~--~~~~~l 99 (120)
T 2if5_A 24 LLCDVVILVEGREFPTHRSVLAAC--SQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVST--ANVGDI 99 (120)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCG--GGHHHH
T ss_pred CCCCeEEEECCEEEeHHHHHHHHh--CHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCH--HHHHHH
Confidence 456999999999999999999998 88999999865 445566655 79999999999999999999876 899999
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
+.+|.+|+++.+++.|.
T Consensus 100 l~~A~~~~i~~L~~~C~ 116 (120)
T 2if5_A 100 LSAARLLEIPAVSHVCA 116 (120)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999999996
No 32
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=123.56 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=79.1
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE---cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI---DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi---Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+.. .+.++.+ |.+|++|+.+|+|+|||++.+++ .++.+|
T Consensus 21 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~--~~v~~l 94 (116)
T 2vpk_A 21 FLCDCTIVIGEFQFKAHRNVLASF--SEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDS--WNVKEI 94 (116)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCT--TTHHHH
T ss_pred CCCcEEEEECCEEEeccHHHHhhc--CHHHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCH--HHHHHH
Confidence 345999999999999999999998 88999999864 4566654 58999999999999999999876 899999
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
+.+|.+||++.+++.|.
T Consensus 95 l~~A~~~~i~~L~~~C~ 111 (116)
T 2vpk_A 95 HQAADYLKVEEVVTKCK 111 (116)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999999996
No 33
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.49 E-value=1.7e-14 Score=125.57 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=80.5
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCC-CCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSD-EPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~-~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||+.... ...+|.+ +.+|++|+.+|+|+|||++.+++ .++.+|
T Consensus 28 ~~~Dv~l~v~~~~~~aHk~iLaa~--S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~--~~~~~l 103 (127)
T 1r29_A 28 ILTDVVIVVSREQFRAHKTVLMAC--SGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLRE--GNIMAV 103 (127)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT--TTHHHH
T ss_pred CCCCEEEEECCEEEehHHHHHHHh--CHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCH--HHHHHH
Confidence 446999999999999999999998 8899999986522 4566766 78999999999999999999876 899999
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
+.+|.+|+++.+.+.|.
T Consensus 104 l~~A~~~~i~~L~~~c~ 120 (127)
T 1r29_A 104 MATAMYLQMEHVVDTCR 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999999996
No 34
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.49 E-value=6.7e-15 Score=127.89 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++...+..++.+ +.+++.|+.+|+|+|||++.+++ .++.+|+
T Consensus 28 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~--~~v~~ll 103 (124)
T 2ihc_A 28 VLCDVTIFVEGQRFRAHRSVLAAC--SSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSK--ENVDEVC 103 (124)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--BHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEET--TTHHHHH
T ss_pred CCcCEEEEECCEEEecHHHHHHHc--CHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccCH--HHHHHHH
Confidence 346999999999999999999998 88999999865333345655 78999999999999999999876 8999999
Q ss_pred hhhhhcCcchHHhhhc
Q 012060 92 DEALYYGIDSQLKSAM 107 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~ 107 (472)
.+|.+||++.+++.|+
T Consensus 104 ~~A~~~~~~~L~~~C~ 119 (124)
T 2ihc_A 104 KCVEFLSVHNIEESCF 119 (124)
T ss_dssp HHHHHHTBSSCCGGGG
T ss_pred HHHHHHCCHHHHHHHH
Confidence 9999999999999997
No 35
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.47 E-value=2.2e-14 Score=123.96 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=78.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++ ...++.+ |.+|+.|+.+|+|+|||++.+++ .++.+++.
T Consensus 27 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~--~~~~~ll~ 99 (121)
T 1buo_A 27 TLCDVVIMVDSQEFHAHRTVLACT--SKMFEILFHR---NSQHYTLDFLSPKTFQQILEYAYTATLQAKA--EDLDDLLY 99 (121)
T ss_dssp TTCCEEEEESSCEEEECHHHHHHH--CHHHHHHTTS---CCSEEEECSSCHHHHHHHHHHHHHSCCCCCG--GGHHHHHH
T ss_pred CCCCEEEEECCEEEehhHHHHhhc--CHHHHHHHcC---CCcEEEeCCCCHHHHHHHHHhhcCCCcCCCH--HHHHHHHH
Confidence 446999999999999999999998 8899999985 3456655 89999999999999999999876 89999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
+|++||++.+.+.|.
T Consensus 100 ~A~~~~i~~L~~~c~ 114 (121)
T 1buo_A 100 AAEILEIEYLEEQCL 114 (121)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHHCCHHHHHHHH
Confidence 999999999999996
No 36
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.47 E-value=3.9e-14 Score=119.64 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=78.1
Q ss_pred CCCcEEEEECC----eEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcc
Q 012060 14 NGDRVKLNVGG----KLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 14 ~~~~V~LnVGG----~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
.-.||+|.|++ +.|++||.+|+++ |+||++||++. +.. .++.+ |.+|++|+.+|+|+|||++.+++ .+
T Consensus 7 ~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~--S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~--~~ 81 (109)
T 2vkp_A 7 LMADVHFVVGPPGATRTVPAHKYVLAVG--SSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEA--DT 81 (109)
T ss_dssp TTCCEEEEESSTTSCEEEEECHHHHHHH--CHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCT--TT
T ss_pred CcccEEEEECCCCCcEEEEeeHHHHHHc--CHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCH--HH
Confidence 45699999999 9999999999998 88999999865 334 66766 89999999999999999999876 89
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+.+|+..|.+|+++.+.+.|.
T Consensus 82 ~~~ll~~A~~~~~~~L~~~c~ 102 (109)
T 2vkp_A 82 VLATLYAAKKYIVPALAKACV 102 (109)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHH
Confidence 999999999999999999996
No 37
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.47 E-value=2.3e-14 Score=128.01 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=79.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||+.. +....+|.+ |.+|++|+.+|+|+|||++.++. .++.
T Consensus 46 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~--~~v~ 121 (144)
T 2ppi_A 46 RFCDAHLVLDGEEIPVQKNILAAA--SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE--DTIQ 121 (144)
T ss_dssp CCCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCT--TTHH
T ss_pred CCcceEEEECCEEEehHHHHHHHc--CHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCH--HHHH
Confidence 345999999999999999999998 88999999753 234556665 89999999999999999999876 8999
Q ss_pred HHHhhhhhcCcchHHhhhc
Q 012060 89 ELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~ 107 (472)
+|+.+|.+||++.+++.|+
T Consensus 122 ~ll~~A~~l~i~~L~~~C~ 140 (144)
T 2ppi_A 122 DVVQAADLLLLTDLKTLCC 140 (144)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999997
No 38
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.45 E-value=4.7e-14 Score=122.10 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=74.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.--||+|.|||+.|++||.+|+++ |+||++. ..++.+ |.+|+.|+.+|+|+|||++.++. .++++|+.
T Consensus 29 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~-------~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~--~~v~~ll~ 97 (119)
T 3m5b_A 29 ALCDTLITVGSQEFPAHSLVLAGV--SQQLGRR-------GQWALGEGISPSTFAQLLNFVYGESVELQP--GELRPLQE 97 (119)
T ss_dssp TTCCEEEEETTEEEEECHHHHHTT--CGGGCCC-------EEEECCSSCCHHHHHHHHHHHTTCCEEECG--GGHHHHHH
T ss_pred CCcceEEEECCEEEeeEHHHHHHc--CHHHhcC-------CCEEEeCCCCHHHHHHHHHHHcCCCcCcCH--HHHHHHHH
Confidence 345999999999999999999998 8899862 234544 89999999999999999999876 89999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
+|++||+..+++.|+
T Consensus 98 aA~~l~i~~l~~~C~ 112 (119)
T 3m5b_A 98 AARALGVQSLEEACW 112 (119)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999999997
No 39
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.45 E-value=1.9e-14 Score=125.85 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||... ...++.+ |.+|+.|+.+|+|+|||++.++. .++..|+
T Consensus 32 ~~~Dv~l~v~~~~~~~Hk~vLaa~--S~~F~~~f~~~--~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~--~~~~~ll 105 (129)
T 3ga1_A 32 LYCDVSVVVKGHAFKAHRAVLAAS--SSYFRDLFNNS--RSAVVELPAAVQPQSFQQILSFCYTGRLSMNV--GDQDLLM 105 (129)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--BHHHHHHHHHC--CCSEEECCTTCCHHHHHHHHHHHHHSEEECCT--TTHHHHH
T ss_pred CCcceEEEECCEEEEehHHHHHHc--CHHHHHHHcCC--CCCEEEECCCCCHHHHHHHHHHHhCCccccCH--HHHHHHH
Confidence 345899999999999999999998 88999999853 5566766 69999999999999999999876 7899999
Q ss_pred hhhhhcCcchHHhhhc
Q 012060 92 DEALYYGIDSQLKSAM 107 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~ 107 (472)
.+|.+||++.+++.|+
T Consensus 106 ~~A~~~~i~~l~~~C~ 121 (129)
T 3ga1_A 106 YTAGFLQIQEIMEKGT 121 (129)
T ss_dssp HHHHHTTBTTSSCC--
T ss_pred HHHHHhCCHHHHHHHH
Confidence 9999999999999997
No 40
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.44 E-value=1.9e-14 Score=124.11 Aligned_cols=87 Identities=8% Similarity=0.121 Sum_probs=77.8
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++ .+.++.+ +.+|+.|+.+|+|+|||++.++. .++.+|+.
T Consensus 26 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~--~~~~~ll~ 98 (119)
T 2q81_A 26 LLCDCTFVVDGVHFKAHKAVLAAC--SEYFKMLFVD---QKDVVHLDISNAAGLGQVLEFMYTAKLSLSP--ENVDDVLA 98 (119)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHH---CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCT--TTHHHHHH
T ss_pred CCcceEEEECCEEEehhHHHHHHc--CHHHHHHHcC---CCCEEEeCCCCHHHHHHHHHHHcCCCCccCH--HHHHHHHH
Confidence 346999999999999999999998 8899999985 3344544 67999999999999999999876 79999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
.|++||++.+++.|+
T Consensus 99 ~A~~l~i~~L~~~C~ 113 (119)
T 2q81_A 99 VATFLQMQDIITACH 113 (119)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999999997
No 41
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.40 E-value=5.5e-14 Score=124.37 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=80.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||+.. +....++.+ |.+|+.|+.+|+|+|||++.++. .++.++
T Consensus 24 ~~~Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~l 99 (145)
T 4eoz_A 24 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD--KMADDL 99 (145)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGG--GTHHHH
T ss_pred CCcceEEEECCEEEEeehHHHHHc--CHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcH--HHHHHH
Confidence 346999999999999999999998 88999999864 334466755 89999999999999999999765 889999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCC
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQG 114 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~ 114 (472)
+..|.+|+++.+.+.|. +...+++
T Consensus 100 l~~A~~~~~~~l~~~c~~~l~~~l~~ 125 (145)
T 4eoz_A 100 LAAADKYALERLKVMCEDALCSNLSV 125 (145)
T ss_dssp HHHHHHTTCHHHHHHHHCC-------
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCH
Confidence 99999999999999998 4444444
No 42
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.39 E-value=1.4e-13 Score=133.76 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=81.4
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+.. +....++.+ |.+|++|+.+|+|+|||++.++. .+++
T Consensus 30 ~~~Dv~l~v~~~~f~~Hr~vLaa~--S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~--~~v~ 105 (256)
T 3hve_A 30 RFCDAHLVLDGEEIPVQKNILAAA--SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE--DTIQ 105 (256)
T ss_dssp CCCCEEEEETTEEEEECHHHHHTT--CHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC---CCHH
T ss_pred CCcceEEEECCEEEechHHHHHHc--CHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccH--hHHH
Confidence 446999999999999999999998 88999999864 234556665 89999999999999999999876 8999
Q ss_pred HHHhhhhhcCcchHHhhhc--CCCCCCCCc
Q 012060 89 ELADEALYYGIDSQLKSAM--SPPPLQGID 116 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~--l~~~l~~l~ 116 (472)
+++.+|.+||++.+.+.|+ +..++++.|
T Consensus 106 ~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n 135 (256)
T 3hve_A 106 DVVQAADLLLLTDLKTLCCEFLEGCIAAEN 135 (256)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence 9999999999999999998 555565543
No 43
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=126.05 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=84.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||... +..+.++.+ |.+|+.|+.+|+|+|||++.++. .++.+|
T Consensus 33 ~~~Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~--~~~~~l 108 (172)
T 3htm_A 33 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD--KMADDL 108 (172)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGG--GTHHHH
T ss_pred CCcceEEEECCEEEEeeHHHHHHc--CHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcH--HHHHHH
Confidence 345999999999999999999998 88999999864 445567765 89999999999999999999765 889999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCCC
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQGI 115 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~l 115 (472)
+..|.+|+++.+.+.|. +...++..
T Consensus 109 l~~A~~~~~~~l~~~c~~~l~~~l~~~ 135 (172)
T 3htm_A 109 LAAADKYALERLKVMCEDALCSNLSVE 135 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHH
Confidence 99999999999999997 44445543
No 44
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.38 E-value=2.5e-13 Score=116.70 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=74.2
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcc-cCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRL-PSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l-~~~~~~~~v~~Ll 91 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+. ...++.+ +.+|+.|+.+|+|+|||++ .+++ .++.+|+
T Consensus 30 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~~F~~~f~~---~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~--~~~~~ll 102 (116)
T 3fkc_A 30 LFCDVTVIVEDRKFRAHKNILSAS--STYFHQLFSV---AGQVVELSFIRAEIFAEILNYIYSSKIVRVRS--DLLDELI 102 (116)
T ss_dssp TTCCEEEEETTEEEEECHHHHHHH--CHHHHHHTTS---CCSEEEECSSCHHHHHHHHHHHTTSCCCSCCH--HHHHHHH
T ss_pred CceeEEEEECCEEEehhHHHHHHc--CHHHHHHHcC---CCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCH--HHHHHHH
Confidence 345999999999999999999998 8899999985 2556655 8999999999999999999 5655 8999999
Q ss_pred hhhhhcCcchHHh
Q 012060 92 DEALYYGIDSQLK 104 (472)
Q Consensus 92 ~eA~~~ql~~l~~ 104 (472)
.+|++|||+.+.+
T Consensus 103 ~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 103 KSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHTCHHHHT
T ss_pred HHHHHhCccccCc
Confidence 9999999998764
No 45
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.35 E-value=2.5e-13 Score=133.73 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCCcEEEEEC---CeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-------cCChhhHHHHhhccccCcccCC
Q 012060 14 NGDRVKLNVG---GKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-------DRDPDVFSVLLSLLRSNRLPST 81 (472)
Q Consensus 14 ~~~~V~LnVG---G~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-------Drdp~~F~~IL~flrtg~l~~~ 81 (472)
.-.||+|.|| |+.|++||.+|+++ |+||++||++. ++.+.++.+ +.+|++|+.+|+|+|||++.++
T Consensus 31 ~~~Dv~l~v~~~~~~~f~~Hr~vLaa~--S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~ 108 (279)
T 3i3n_A 31 LFCDITLCFGGAGGREFRAHRSVLAAA--TEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVS 108 (279)
T ss_dssp TTCCEEEECC----CEEEECHHHHHHH--CTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEE
T ss_pred CCCCeEEEEcCCCCeEEehHHHHHHHc--CHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccC
Confidence 3469999999 99999999999998 88999999875 555667765 7899999999999999999987
Q ss_pred CCCcchHHHHhhhhhcCcchHHhhhc--CCCCCCCCc
Q 012060 82 ASRFSKQELADEALYYGIDSQLKSAM--SPPPLQGID 116 (472)
Q Consensus 82 ~~~~~v~~Ll~eA~~~ql~~l~~~c~--l~~~l~~l~ 116 (472)
. .++.+|+.+|.+||++.+.+.|+ +..++++.|
T Consensus 109 ~--~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n 143 (279)
T 3i3n_A 109 T--GSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN 143 (279)
T ss_dssp T--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTT
T ss_pred H--HHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcch
Confidence 6 89999999999999999999998 444555433
No 46
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.23 E-value=3.4e-12 Score=127.41 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=84.1
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|.+||.+|+++ |+||++||.+. +....+|.+ |.+|+.|+.+|+|+|||++++.. .+++.|
T Consensus 173 ~~~Dv~l~v~~~~f~~Hk~vLaa~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~--~~~~~l 248 (312)
T 3hqi_A 173 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD--KMADDL 248 (312)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHH--HHHHHH
T ss_pred CCCceEEEECCEEEeHHHHHHHHc--CHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChH--HHHHHH
Confidence 456999999999999999999998 88999999865 556677766 89999999999999999998765 789999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCCCc
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQGID 116 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~l~ 116 (472)
+.+|.+|+++.+.+.|. +...++..+
T Consensus 249 l~~A~~~~~~~l~~~c~~~l~~~~~~~n 276 (312)
T 3hqi_A 249 LAAADKYALERLKVMCEDALCSNLSVEN 276 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHhCHHHHHHHHHHHHHccCCHHH
Confidence 99999999999999998 545555433
No 47
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.72 E-value=5.3e-09 Score=94.81 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=70.0
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCC-C---CCCCCCEEE-cCChhhHHHHhhccccCc--------------
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNR-Q---SDEPNPIFI-DRDPDVFSVLLSLLRSNR-------------- 77 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~-~---~~~~~~vfi-Drdp~~F~~IL~flrtg~-------------- 77 (472)
|+|.. +|+.|.+||.+ |++ |+||++||+. . +..+.+|-+ ++++.+++.||+|+|+.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~--S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQ--SVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHT--CHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHH--hHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 78875 89999999999 665 8899999986 2 334467755 899999999999999988
Q ss_pred ------------ccCCCCCcchHHHHhhhhhcCcchHHhhhc
Q 012060 78 ------------LPSTASRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 78 ------------l~~~~~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+.++. .++.+|+.+|+||+|.+|++.||
T Consensus 80 ~~~~i~~wD~~F~~id~--~~l~eLl~AAnyL~I~~Lld~~c 119 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQ--GTLFELILAANYLDIKGLLDVTC 119 (159)
T ss_dssp -CCCCCHHHHHHTCSCH--HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred chhhhhHHHHHHHcCCH--HHHHHHHHHHHHHhHHHHHHHHH
Confidence 55443 78999999999999999999999
No 48
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.39 E-value=2.3e-07 Score=77.07 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=61.0
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccc-----c---Cccc---C
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLR-----S---NRLP---S 80 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flr-----t---g~l~---~ 80 (472)
|+|.- +|+.|++||.+ |++ |+||++||+.. +..+.+|-+ ++++.+++.|++|+| + +.++ +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~--S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALT--SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTT--SHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHH--hHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 55654 79999999999 776 88999999852 345667755 899999999999999 5 6776 6
Q ss_pred CCCCcchHHHHhhhhhcCc
Q 012060 81 TASRFSKQELADEALYYGI 99 (472)
Q Consensus 81 ~~~~~~v~~Ll~eA~~~ql 99 (472)
++ .++.+|+.+|+||+.
T Consensus 81 ~~--~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 AP--EIALELLMAANFLDC 97 (97)
T ss_dssp CG--GGHHHHHHHHHHHTC
T ss_pred CH--HHHHHHHHHHhhhCC
Confidence 55 889999999999973
No 49
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.15 E-value=3.3e-07 Score=83.10 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=42.5
Q ss_pred CcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEE-EcCChhhHHHHhhccccCc----------------
Q 012060 16 DRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIF-IDRDPDVFSVLLSLLRSNR---------------- 77 (472)
Q Consensus 16 ~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vf-iDrdp~~F~~IL~flrtg~---------------- 77 (472)
..|+|.. +|+.|.+++.+ |++ |.+|+.||... ...++|- .++++.+++.|++|+++.+
T Consensus 4 ~~v~L~SsDg~~f~v~~~v-A~~--S~~ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 4 KKIVLKSSDGESFEVEEAV-ALE--SQTIAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp ----CCC---------CHH-HHT--CTTTC-------------CCTTSCHHHHHHHHHC---------------------
T ss_pred CEEEEEcCCCCEEEECHHH-HHH--hHHHHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 4578875 89999999998 555 88999999753 2334564 4899999999999999876
Q ss_pred -----------ccCCCCCcchHHHHhhhhhcCcchHHhhhc
Q 012060 78 -----------LPSTASRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 78 -----------l~~~~~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+.+. ...+.+|+.+|+||+|.+|++.||
T Consensus 80 ~~~i~~wD~~Fl~vd--~~~l~eLi~AAnyL~I~~Lldl~c 118 (160)
T 2p1m_A 80 DDDLKAWDADFMKID--QATLFELILAANYLNIKNLLDLTC 118 (160)
T ss_dssp -----------------------CHHHHHHTTCHHHHHHHH
T ss_pred cchhhHHHHHHHcCC--HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2332 267888999999999999999999
No 50
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.12 E-value=8.1e-07 Score=78.84 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=68.6
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCc------------------
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNR------------------ 77 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~------------------ 77 (472)
|+|.- +|+.|.+++.+ |+. |.+|+.|++.. . .++|-+ ++++.+++.|++|+++.+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~--S~~ik~ml~~~-~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQ--SVTIKTMLEDL-G-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGT--CHHHHHHHHHT-C-CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHH--hHHHHHHHHhc-C-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 77777 88999999998 555 88999999742 1 456755 999999999999998865
Q ss_pred --------ccCCCCCcchHHHHhhhhhcCcchHHhhhc
Q 012060 78 --------LPSTASRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 78 --------l~~~~~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+.+. ..++.+|+.+|+||+|.+|++.||
T Consensus 79 i~~wD~~F~~vd--~~~l~eLi~AAnyL~I~~Lldl~c 114 (141)
T 1fs1_B 79 IPVWDQEFLKVD--QGTLFELILAANYLDIKGLLDVTC 114 (141)
T ss_dssp --HHHHHHTCSC--HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHhCC--HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3332 367889999999999999999998
No 51
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.06 E-value=0.00061 Score=69.18 Aligned_cols=258 Identities=16% Similarity=0.143 Sum_probs=133.3
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||... ........+-+.+.+++. ++.+++.|+ .+| ++..||..+.+-.. .+......+.+++..
T Consensus 153 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~--~dg-----~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~ 222 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGS--SDS-----TVRVWDVNTGEMLN--TLIHHCEAVLHLRFN 222 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEE--TTS-----CEEEEESSSCCEEE--EECCCCSCEEEEECC
T ss_pred CeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEc--CCC-----eEEEEECCCCcEEE--EEcCCCCcEEEEEEc
Confidence 4588887332 221122222333444444 888888888 555 45566666554222 222223334345555
Q ss_pred CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 228 PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 228 ~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
++.|++|+.+ .+|-.||..+.+.+.......+. ......+..++..+++|+. .+.|..||.+++
T Consensus 223 ~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~ 286 (435)
T 1p22_A 223 NGMMVTCSKD----RSIAVWDMASPTDITLRRVLVGH------RAAVNVVDFDDKYIVSASG------DRTIKVWNTSTC 286 (435)
T ss_dssp TTEEEEEETT----SCEEEEECSSSSCCEEEEEECCC------SSCEEEEEEETTEEEEEET------TSEEEEEETTTC
T ss_pred CCEEEEeeCC----CcEEEEeCCCCCCceeeeEecCC------CCcEEEEEeCCCEEEEEeC------CCeEEEEECCcC
Confidence 6656656554 47889999884422110000000 0111122235666666663 347999999999
Q ss_pred eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEE
Q 012060 308 EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLI 387 (472)
Q Consensus 308 ~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~ 387 (472)
+++.+..... ..+ .....++.++++|+.++....-|+++ ...+.. +.... .....
T Consensus 287 ~~~~~~~~~~--------~~v---~~~~~~~~~l~~g~~dg~i~iwd~~~-----~~~~~~----~~~h~-----~~v~~ 341 (435)
T 1p22_A 287 EFVRTLNGHK--------RGI---ACLQYRDRLVVSGSSDNTIRLWDIEC-----GACLRV----LEGHE-----ELVRC 341 (435)
T ss_dssp CEEEEEECCS--------SCE---EEEEEETTEEEEEETTSCEEEEETTT-----CCEEEE----ECCCS-----SCEEE
T ss_pred cEEEEEcCCC--------CcE---EEEEeCCCEEEEEeCCCeEEEEECCC-----CCEEEE----EeCCc-----CcEEE
Confidence 9887776541 111 12233677888999888755434443 223332 21111 12222
Q ss_pred EEECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 388 HCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 388 ~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
...+++.+++++ |.|.+|+-..............-+.+.+ ..+.|..+++.|.+| ++=.+...|-||+-.
T Consensus 342 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~l-~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 342 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-----HSGRVFRLQFDEFQI-VSSSHDDTILIWDFL 413 (435)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-----CSSCCCCEEECSSCE-EECCSSSEEEEEC--
T ss_pred EEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC-----CCCCeEEEEeCCCEE-EEEeCCCEEEEEECC
Confidence 333666666654 8899998653311111111111121222 355799999977665 455566789999853
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.01 E-value=0.0025 Score=64.67 Aligned_cols=251 Identities=13% Similarity=0.110 Sum_probs=134.9
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||... ........+-+.+.+++ .++.+++.|+ .+| ++..||..+.+-.. .+......+.+++..
T Consensus 139 g~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~~--~dg-----~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~ 208 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRTLVGHTGGVWSSQ-MRDNIIISGS--TDR-----TLKVWNAETGECIH--TLYGHTSTVRCMHLH 208 (445)
T ss_dssp SCEEEEETTTCCEEEECCCCSSCEEEEE-EETTEEEEEE--TTS-----CEEEEETTTTEEEE--EECCCSSCEEEEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEE-ecCCEEEEEe--CCC-----eEEEEECCcCcEEE--EECCCCCcEEEEEec
Confidence 4588888443 22222222333343444 3566677777 454 45566766554222 122222333345565
Q ss_pred CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 228 PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 228 ~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
++.|++|+.+ .+|-.||..+.+++..+... ......+..++.++++|+.+ +.|..||++++
T Consensus 209 ~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~---------~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 269 (445)
T 2ovr_B 209 EKRVVSGSRD----ATLRVWDIETGQCLHVLMGH---------VAAVRCVQYDGRRVVSGAYD------FMVKVWDPETE 269 (445)
T ss_dssp TTEEEEEETT----SEEEEEESSSCCEEEEEECC---------SSCEEEEEECSSCEEEEETT------SCEEEEEGGGT
T ss_pred CCEEEEEeCC----CEEEEEECCCCcEEEEEcCC---------cccEEEEEECCCEEEEEcCC------CEEEEEECCCC
Confidence 6666666544 47889999985543333210 01111223367777777744 46999999999
Q ss_pred eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEE
Q 012060 308 EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLI 387 (472)
Q Consensus 308 ~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~ 387 (472)
+++.+..... . .-.+ ++. ++..+++|+.++....-|+++ ...+.. +..... .-..+
T Consensus 270 ~~~~~~~~~~----~-~v~~-----~~~-~~~~l~~~~~d~~i~i~d~~~-----~~~~~~----~~~~~~----~v~~~ 325 (445)
T 2ovr_B 270 TCLHTLQGHT----N-RVYS-----LQF-DGIHVVSGSLDTSIRVWDVET-----GNCIHT----LTGHQS----LTSGM 325 (445)
T ss_dssp EEEEEECCCS----S-CEEE-----EEE-CSSEEEEEETTSCEEEEETTT-----CCEEEE----ECCCCS----CEEEE
T ss_pred cEeEEecCCC----C-ceEE-----EEE-CCCEEEEEeCCCeEEEEECCC-----CCEEEE----EcCCcc----cEEEE
Confidence 9888876441 0 1112 233 777788898887755434433 222222 111111 22344
Q ss_pred EEECCEEEEec-CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 388 HCYKNQVFVGR-GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 388 ~~~~g~l~~~~-g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
...++.|++.. +|.|.+|+-... .. -+.+-+. ....+.|+.+++.|+.|+..- +...|-||+...
T Consensus 326 ~~~~~~l~~~~~dg~i~vwd~~~~--------~~-~~~~~~~--~~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~ 391 (445)
T 2ovr_B 326 ELKDNILVSGNADSTVKIWDIKTG--------QC-LQTLQGP--NKHQSAVTCLQFNKNFVITSS-DDGTVKLWDLKT 391 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTTC--------CE-EEEECST--TSCSSCEEEEEECSSEEEEEE-TTSEEEEEETTT
T ss_pred EEeCCEEEEEeCCCeEEEEECCCC--------cE-EEEEccC--CCCCCCEEEEEECCCEEEEEe-CCCeEEEEECCC
Confidence 45555555554 488999986321 11 1111111 124567999999887666654 456799998543
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.88 E-value=0.0038 Score=63.29 Aligned_cols=254 Identities=12% Similarity=0.166 Sum_probs=131.2
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||+.. ........+-..+.+++ .++..+++|+ .+| ++..||..+.+-.. .+......+.+++.
T Consensus 179 g~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s--~dg-----~i~~wd~~~~~~~~--~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTLYGHTSTVRCMH-LHEKRVVSGS--RDA-----TLRVWDIETGQCLH--VLMGHVAAVRCVQY- 247 (445)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEE-EETTEEEEEE--TTS-----EEEEEESSSCCEEE--EEECCSSCEEEEEE-
T ss_pred CeEEEEECCcCcEEEEECCCCCcEEEEE-ecCCEEEEEe--CCC-----EEEEEECCCCcEEE--EEcCCcccEEEEEE-
Confidence 3477877543 22222222223333333 4566677777 454 45566665543221 11112223333444
Q ss_pred CCe-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCC
Q 012060 228 PTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 228 ~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~ 306 (472)
++. |++|+.+ ..|-.||+.+.+++.++.... .....+..++..+++|+.+ +.|..||.++
T Consensus 248 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~ 308 (445)
T 2ovr_B 248 DGRRVVSGAYD----FMVKVWDPETETCLHTLQGHT---------NRVYSLQFDGIHVVSGSLD------TSIRVWDVET 308 (445)
T ss_dssp CSSCEEEEETT----SCEEEEEGGGTEEEEEECCCS---------SCEEEEEECSSEEEEEETT------SCEEEEETTT
T ss_pred CCCEEEEEcCC----CEEEEEECCCCcEeEEecCCC---------CceEEEEECCCEEEEEeCC------CeEEEEECCC
Confidence 555 4446554 468899999866544443210 1111222367777777643 4699999999
Q ss_pred CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeE
Q 012060 307 GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKL 386 (472)
Q Consensus 307 ~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~ 386 (472)
++++++..... . .-.+ +.. .+.++++|+.++....-|+++ ...+...... .... ....
T Consensus 309 ~~~~~~~~~~~--~---~v~~-----~~~-~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~--~~~~----~~v~ 366 (445)
T 2ovr_B 309 GNCIHTLTGHQ--S---LTSG-----MEL-KDNILVSGNADSTVKIWDIKT-----GQCLQTLQGP--NKHQ----SAVT 366 (445)
T ss_dssp CCEEEEECCCC--S---CEEE-----EEE-ETTEEEEEETTSCEEEEETTT-----CCEEEEECST--TSCS----SCEE
T ss_pred CCEEEEEcCCc--c---cEEE-----EEE-eCCEEEEEeCCCeEEEEECCC-----CcEEEEEccC--CCCC----CCEE
Confidence 99888876541 0 0111 133 566777888887655434432 2233221111 0111 1233
Q ss_pred EEEECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccce-----eEE
Q 012060 387 IHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEG-----IEV 459 (472)
Q Consensus 387 ~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~-----~~v 459 (472)
....+++.+++++ |.|.+|+-... +..+. +.........+.|..+++-.+..+++=-..+| +.|
T Consensus 367 ~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v 437 (445)
T 2ovr_B 367 CLQFNKNFVITSSDDGTVKLWDLKTG--------EFIRN-LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 437 (445)
T ss_dssp EEEECSSEEEEEETTSEEEEEETTTC--------CEEEE-EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCC--------ceeee-eeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEE
Confidence 3344555555543 78999985311 11122 21111123467899999987777655444444 889
Q ss_pred eecC
Q 012060 460 WESS 463 (472)
Q Consensus 460 w~~~ 463 (472)
|+=.
T Consensus 438 ~df~ 441 (445)
T 2ovr_B 438 LDFD 441 (445)
T ss_dssp EECC
T ss_pred EECC
Confidence 8743
No 54
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.86 E-value=0.0013 Score=64.98 Aligned_cols=221 Identities=12% Similarity=0.095 Sum_probs=123.6
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
.||+.|+ .++ .+..||..+.+....-+... .+.+++.. +.+||+++.. .+.|.+||+.+.+++..
T Consensus 45 ~l~~~~~--~d~-----~i~v~d~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~---~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 45 KVYVANA--HSN-----DVSIIDTATNNVIATVPAGS---SPQGVAVSPDGKQVYVTNMA---SSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp EEEEEEG--GGT-----EEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred EEEEECC--CCC-----eEEEEECCCCeEEEEEECCC---CccceEECCCCCEEEEEECC---CCEEEEEECCCCeEEEE
Confidence 4677776 333 56678877765443222222 22235554 3358884332 35799999999665444
Q ss_pred cccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC
Q 012060 258 IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE 337 (472)
Q Consensus 258 ~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~ 337 (472)
+.. .. .+....+.+-+..||+++. ..+.|..||++++++++..... ....+++....+
T Consensus 112 ~~~-----~~--~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~~~dg 169 (391)
T 1l0q_A 112 VKT-----GK--SPLGLALSPDGKKLYVTNN------GDKTVSVINTVTKAVINTVSVG---------RSPKGIAVTPDG 169 (391)
T ss_dssp EEC-----SS--SEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEECC---------SSEEEEEECTTS
T ss_pred EeC-----CC--CcceEEECCCCCEEEEEeC------CCCEEEEEECCCCcEEEEEecC---------CCcceEEECCCC
Confidence 433 11 1233444455566877754 2358999999999977766543 111233345567
Q ss_pred CeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec----CCeEEEeeccccc
Q 012060 338 LTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR----GGSLEVWSRVREG 411 (472)
Q Consensus 338 ~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~----g~~~~v~~~~~~~ 411 (472)
..||+.++.++.+..-|+++ ...+.. ..... .-..++.. +.+||+.. .+.|.+|+....
T Consensus 170 ~~l~~~~~~~~~v~~~d~~~-----~~~~~~----~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~- 234 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTVT-----NSVIDT----VKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN- 234 (391)
T ss_dssp SEEEEEETTTTEEEEEETTT-----TEEEEE----EECSS-----EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-
T ss_pred CEEEEEeCCCCEEEEEECCC-----CeEEEE----EecCC-----CccceEECCCCCEEEEEecCcCCCcEEEEECCCC-
Confidence 78888888776654434432 222221 11111 11223332 34677774 589999986321
Q ss_pred cccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCC
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
+..+. + + .+..+..+++- |.+||++-.+...|.||+...
T Consensus 235 -------~~~~~-~----~--~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 235 -------KITAR-I----P--VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp -------EEEEE-E----E--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -------eEEEE-E----e--cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 11111 1 0 12246666665 889999977778899999653
No 55
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.85 E-value=0.0028 Score=63.50 Aligned_cols=272 Identities=11% Similarity=0.071 Sum_probs=141.7
Q ss_pred ceeeccCCcEEEeee--CceEEeeccc-CCCC-----Cccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCC
Q 012060 134 FTASSDDGSLWIAHG--GQISVYDWNL-SHSV-----TVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 134 ~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~-----~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
+...| ++.++++.+ +.|..||... .... ....+.+.+.++++ -++.+|+.|+ .++ .+..||+.
T Consensus 128 ~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~--~d~-----~v~~~d~~ 199 (433)
T 3bws_A 128 VRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM--QAN-----AVHVFDLK 199 (433)
T ss_dssp CEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG--GGT-----EEEEEETT
T ss_pred EEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC--CCC-----EEEEEECC
Confidence 33334 356664443 3488888332 1111 11122333333443 3678888887 333 56678876
Q ss_pred CCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCe
Q 012060 205 SAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGV 282 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~ 282 (472)
+.+....-... ...+.+++.. +..||+++.. ...|-+||+.+.+++..+.. .. .+....+.+-+..
T Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~---~~----~~~~~~~~~~g~~ 267 (433)
T 3bws_A 200 TLAYKATVDLT--GKWSKILLYDPIRDLVYCSNWI---SEDISVIDRKTKLEIRKTDK---IG----LPRGLLLSKDGKE 267 (433)
T ss_dssp TCCEEEEEECS--SSSEEEEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEECCC---CS----EEEEEEECTTSSE
T ss_pred CceEEEEEcCC--CCCeeEEEEcCCCCEEEEEecC---CCcEEEEECCCCcEEEEecC---CC----CceEEEEcCCCCE
Confidence 65432211111 1122235554 3458884322 24789999998654433322 10 1233334444556
Q ss_pred EEEEEEeCCCcc-ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCC
Q 012060 283 VLGSAIAWGAFG-YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGED 361 (472)
Q Consensus 283 Lyv~Gg~~g~~~-~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d 361 (472)
|++++..++... ..+.|..||++++++++....+. ....++....+..||+.++.++.+..-|++
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~----- 333 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---------NKRHIVSGNTENKIYVSDMCCSKIEVYDLK----- 333 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---------CEEEEEECSSTTEEEEEETTTTEEEEEETT-----
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---------CcceEEECCCCCEEEEEecCCCEEEEEECC-----
Confidence 766654333211 14689999999998776653331 111223355566899998877764433333
Q ss_pred CcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC----------------CeEEEeeccccccccccCCcceee
Q 012060 362 PWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG----------------GSLEVWSRVREGRNRSCSEGLFRR 423 (472)
Q Consensus 362 ~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g----------------~~~~v~~~~~~~~~~~~~~~~~r~ 423 (472)
.+..+.. +.... .-..++.. +..||+... |.|.+|+.... +. .+
T Consensus 334 ~~~~~~~----~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--------~~-~~ 395 (433)
T 3bws_A 334 EKKVQKS----IPVFD-----KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--------TV-KE 395 (433)
T ss_dssp TTEEEEE----EECSS-----SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--------EE-EE
T ss_pred CCcEEEE----ecCCC-----CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC--------cE-EE
Confidence 2333332 21111 12234433 346777765 38999986422 11 11
Q ss_pred ccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 424 NFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 424 ~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.+ + .+..|..+++ -|..|+++-.+...|.||+-.
T Consensus 396 ~~----~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FW----E--AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EE----E--CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred Ee----c--CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 11 1 1345777777 578899888777899999854
No 56
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.84 E-value=0.0027 Score=63.08 Aligned_cols=236 Identities=15% Similarity=0.201 Sum_probs=127.6
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCc-------CcccceeEEEEeCCeEEEEecCCCCCcee
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPR-------IYRATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~-------~~R~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
.++.++.||+... ++ .+.+||+.+ ..|..-.+.. ...... ..++.++.||++..+ ..+
T Consensus 49 p~v~~~~v~~~~~---~g-----~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~----g~l 115 (376)
T 3q7m_A 49 PALADNVVYAADR---AG-----LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEK----AQV 115 (376)
T ss_dssp CEEETTEEEEECT---TS-----EEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETT----SEE
T ss_pred cEEECCEEEEEcC---CC-----eEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCC----CEE
Confidence 3457889998765 22 566777754 4476543221 112222 367788999995433 468
Q ss_pred EEEeCCCcccccccccccCCCcccccccce--eEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAVGKL--TWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~m~~--~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
-+||+.| |+ -.|+.-.+... .-...++.||+... .+.+.+||+++++++|+...+......
T Consensus 116 ~a~d~~t-------G~---~~W~~~~~~~~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 116 YALNTSD-------GT---VAWQTKVAGEALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp EEEETTT-------CC---EEEEEECSSCCCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----
T ss_pred EEEECCC-------CC---EEEEEeCCCceEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceee
Confidence 8999999 44 33665433111 11235788888532 357999999999999998865211112
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcc-cCCCCCCCcCeEEEEECCEEEEec-CC
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMI-SSSGNNNGENKLIHCYKNQVFVGR-GG 400 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~~g~l~~~~-g~ 400 (472)
+.... .++.++.||+ |..++.+...|.++ +.-.|..-.+.+.... ..+- ........+.++.||+.. ++
T Consensus 179 ~~~~~-----~~~~~~~v~~-g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~v~~~~~~g 249 (376)
T 3q7m_A 179 RGESA-----PTTAFGAAVV-GGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRL--SDVDTTPVVVNGVVFALAYNG 249 (376)
T ss_dssp CCCCC-----CEEETTEEEE-CCTTTEEEEEETTT-CCEEEEEECCC-------------CCCCCCEEETTEEEEECTTS
T ss_pred cCCCC-----cEEECCEEEE-EcCCCEEEEEECCC-CcEEEEEecccCCCCcccccc--cccCCCcEEECCEEEEEecCc
Confidence 22222 2455788875 55555444333322 1334655332111000 0000 001233356789999986 57
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec--------cceeEEeecCC
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED--------VEGIEVWESSN 464 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~--------~~~~~vw~~~~ 464 (472)
.|-.++... .+.+.+.. -+....+..-++++|+.-.+ ..+-.+|+.+.
T Consensus 250 ~l~~~d~~t-------G~~~w~~~---------~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 250 NLTALDLRS-------GQIMWKRE---------LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp CEEEEETTT-------CCEEEEEC---------CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred EEEEEECCC-------CcEEeecc---------CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 777776521 12222321 12245566778888887654 35667888763
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.78 E-value=0.0075 Score=61.08 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=102.3
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
+...+..|++|+.+ ..|-.||..+.+++..+... .-....+.+.+ ++..+++|+.+ +.|..||
T Consensus 276 ~~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~-~~~~l~sg~~d------g~i~vwd 338 (464)
T 3v7d_B 276 VSGHGNIVVSGSYD----NTLIVWDVAQMKCLYILSGH------TDRIYSTIYDH-ERKRCISASMD------TTIRIWD 338 (464)
T ss_dssp EEEETTEEEEEETT----SCEEEEETTTTEEEEEECCC------SSCEEEEEEET-TTTEEEEEETT------SCEEEEE
T ss_pred EcCCCCEEEEEeCC----CeEEEEECCCCcEEEEecCC------CCCEEEEEEcC-CCCEEEEEeCC------CcEEEEE
Confidence 33334445556554 36889999986654443221 01112233443 45555666643 4699999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCc
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGE 383 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~ 383 (472)
.++++++.+..... .. |......+..++.|+.++....-|+++.+ ..-. ...... .
T Consensus 339 ~~~~~~~~~~~~h~--------~~---v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----~~~~----~~~~~~----~ 394 (464)
T 3v7d_B 339 LENGELMYTLQGHT--------AL---VGLLRLSDKFLVSAAADGSIRGWDANDYS-----RKFS----YHHTNL----S 394 (464)
T ss_dssp TTTTEEEEEECCCS--------SC---EEEEEECSSEEEEEETTSEEEEEETTTCC-----EEEE----EECTTC----C
T ss_pred CCCCcEEEEEeCCC--------Cc---EEEEEEcCCEEEEEeCCCcEEEEECCCCc-----eeee----ecCCCC----c
Confidence 99999888876541 11 11223356778888888775543444322 1111 111111 2
Q ss_pred CeEEEEECCEEEE-ecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccc--eeEEe
Q 012060 384 NKLIHCYKNQVFV-GRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVE--GIEVW 460 (472)
Q Consensus 384 ~~~~~~~~g~l~~-~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~--~~~vw 460 (472)
.......++++++ ..++.|.+|+-. +.++.++.+.+ ..+.|..+++=|++|+++=.+.. .+++|
T Consensus 395 ~~~~~~~~~~~l~~~~dg~i~iwd~~--------~g~~~~~~~~~-----~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 395 AITTFYVSDNILVSGSENQFNIYNLR--------SGKLVHANILK-----DADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEEEEECSSEEEEEETTEEEEEETT--------TCCEEESCTTT-----TCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cEEEEEeCCCEEEEecCCeEEEEECC--------CCcEEehhhcc-----CCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 3323344554444 456899999863 12223433333 35689999999999999876654 34444
Q ss_pred e
Q 012060 461 E 461 (472)
Q Consensus 461 ~ 461 (472)
+
T Consensus 462 d 462 (464)
T 3v7d_B 462 D 462 (464)
T ss_dssp E
T ss_pred e
Confidence 4
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.66 E-value=0.029 Score=55.55 Aligned_cols=276 Identities=17% Similarity=0.117 Sum_probs=137.5
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
+.++++.+ |.|..||... ........+-+.+.++++. ++.+.+.|+ .+| ++..||..+.+ .+..+..
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~-----~i~iwd~~~~~--~~~~~~~ 179 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS--QDM-----QLKIWSVKDGS--NPRTLIG 179 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTCC--CCEEEEC
T ss_pred CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe--CCC-----eEEEEeCCCCc--CceEEcC
Confidence 44443333 4588887432 2111112233334455543 566777777 454 45667765443 2222222
Q ss_pred cccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc-------------------ccee
Q 012060 217 YRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-------------------GKLT 275 (472)
Q Consensus 217 ~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-------------------m~~~ 275 (472)
....+.+++.. ++.+++ |+.+ .+|..||..+.+++..+....+. -..+.. ..+.
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLD----GTIRLWECGTGTTIHTFNRKENP-HDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETT----SCEEEEETTTTEEEEEECBTTBT-TCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCC----CcEEEeECCCCceeEEeecCCCC-CCCccEEEEecCCcceeeecccCcccceE
Confidence 23333345555 344444 6544 36889999987765555431100 000000 0111
Q ss_pred EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 276 WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 276 ~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
+. -++.++++|+.+ +.|..||.++++.+.+..... ...+..++....+..+++.|+.++.+..-|+
T Consensus 255 ~s-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 255 FG-TYGKYVIAGHVS------GVITVHNVFSKEQTIQLPSKF-------TCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp SS-CTTEEEEEEETT------SCEEEEETTTCCEEEEECCTT-------SSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred Ec-CCCCEEEEEcCC------CeEEEEECCCCceeEEccccc-------CCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 11 256666776643 469999999998777665431 1122222334434438888998877654455
Q ss_pred cccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccccccc---cCCcceeeccccccc
Q 012060 356 RNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRS---CSEGLFRRNFVDRVE 430 (472)
Q Consensus 356 ~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~---~~~~~~r~~~~~~~~ 430 (472)
++-+. +-..+.. .... .-..+...+++++++++ +.|.+|+-........ +....+ ++
T Consensus 321 ~~~~~-~~~~~~~------~~~~----~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~---~~---- 382 (420)
T 3vl1_A 321 RSPEC-PVGEFLI------NEGT----PINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTF---LV---- 382 (420)
T ss_dssp TCTTS-CSEEEEE------STTS----CEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEE---EC----
T ss_pred CCCcC-chhhhhc------cCCC----CceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccE---Ec----
Confidence 43221 1122221 0111 23344667888888765 7899998643211110 111110 11
Q ss_pred cCCCCceEEEee--cCc---eEEEeeeccceeEEeecCC
Q 012060 431 DSGRGAISRIDA--GGN---RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 431 ~~~~~~i~~~~~--gg~---r~f~~~~~~~~~~vw~~~~ 464 (472)
...+.|.++.+ -|. +|+++=++ ..+-+|....
T Consensus 383 -~~~~~v~~~~~s~~~~~~g~l~a~g~~-g~~~~~~~~~ 419 (420)
T 3vl1_A 383 -SNDDAVSQFCYVSDDESNGEVLEVGKN-NFCALYNLSN 419 (420)
T ss_dssp -CSSCCCCEEEEECCSSSSCEEEEEETT-TEEEEEESCC
T ss_pred -cCCcceEEEEEccCCCCcceEEEEcCC-ceEEEEeccC
Confidence 23445766664 444 66666544 5688888654
No 59
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.64 E-value=0.0031 Score=62.23 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=121.2
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
+.+|+.|+ .++ .+..||..+.+-...-+... . +.+++.. ++ +||+ +..+ ..|..||+.+.+++
T Consensus 2 ~~l~vs~~--~d~-----~v~v~d~~~~~~~~~~~~~~--~-~~~~~~s~dg~~l~~~~~~d----~~i~v~d~~~~~~~ 67 (391)
T 1l0q_A 2 TFAYIANS--ESD-----NISVIDVTSNKVTATIPVGS--N-PMGAVISPDGTKVYVANAHS----NDVSIIDTATNNVI 67 (391)
T ss_dssp EEEEEEET--TTT-----EEEEEETTTTEEEEEEECSS--S-EEEEEECTTSSEEEEEEGGG----TEEEEEETTTTEEE
T ss_pred CEEEEEcC--CCC-----EEEEEECCCCeEEEEeecCC--C-cceEEECCCCCEEEEECCCC----CeEEEEECCCCeEE
Confidence 45778877 343 56677776655332211111 1 1235554 33 5888 4332 47889999997655
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.. .. .+....+.+-+..||+++. ..+.|.+||+++++++...... . .+.+++...
T Consensus 68 ~~~~~---~~----~v~~~~~spdg~~l~~~~~------~~~~v~v~d~~~~~~~~~~~~~---~------~~~~~~~s~ 125 (391)
T 1l0q_A 68 ATVPA---GS----SPQGVAVSPDGKQVYVTNM------ASSTLSVIDTTSNTVAGTVKTG---K------SPLGLALSP 125 (391)
T ss_dssp EEEEC---SS----SEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEECS---S------SEEEEEECT
T ss_pred EEEEC---CC----CccceEECCCCCEEEEEEC------CCCEEEEEECCCCeEEEEEeCC---C------CcceEEECC
Confidence 44433 11 2233445555666777754 2357999999999977766543 1 122333455
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccc
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREG 411 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~ 411 (472)
.+..||+.++.++.+..-|++ +.+....- .... .-..++.. +.+||++. ++.|.+|+.-..
T Consensus 126 dg~~l~~~~~~~~~v~~~d~~---~~~~~~~~------~~~~-----~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~- 190 (391)
T 1l0q_A 126 DGKKLYVTNNGDKTVSVINTV---TKAVINTV------SVGR-----SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN- 190 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETT---TTEEEEEE------ECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-
T ss_pred CCCEEEEEeCCCCEEEEEECC---CCcEEEEE------ecCC-----CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence 566788888877665443433 22222211 1111 11233332 34787764 367999976321
Q ss_pred cccccCCcceeeccccccccCCCCceEEEee--cCceEEEeee--ccceeEEeecC
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSRE--DVEGIEVWESS 463 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~--~~~~~~vw~~~ 463 (472)
+..+. +. ..+.+..+++ .|.+|+++-. ....|-||+..
T Consensus 191 -------~~~~~--~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 191 -------SVIDT--VK-----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp -------EEEEE--EE-----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred -------eEEEE--Ee-----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 11111 11 1234666555 5888999886 56788899854
No 60
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.62 E-value=0.02 Score=56.20 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=130.5
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcccc-CCCCcCcccceeEEEE-eCCeEEEEecCCCCCceeEEEeCC
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD-PSDPRIYRATVTAIAD-SPTTVFSSLVCPHKENSVLLIDKS 250 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~-~a~m~~~R~~~~ava~-l~g~IYAGg~~~~~l~sVE~YDp~ 250 (472)
+++.-++.+|++.. .+ +.+..+|+.+.+-.. ++....++ ++++ -+++||++.. ..++|-+||+.
T Consensus 48 ~i~~~~~~lyv~~~--~~-----~~v~viD~~t~~~~~~i~~~~~p~----~i~~~~~g~lyv~~~---~~~~v~~iD~~ 113 (328)
T 3dsm_A 48 SMVIRDGIGWIVVN--NS-----HVIFAIDINTFKEVGRITGFTSPR----YIHFLSDEKAYVTQI---WDYRIFIINPK 113 (328)
T ss_dssp EEEEETTEEEEEEG--GG-----TEEEEEETTTCCEEEEEECCSSEE----EEEEEETTEEEEEEB---SCSEEEEEETT
T ss_pred EEEEECCEEEEEEc--CC-----CEEEEEECcccEEEEEcCCCCCCc----EEEEeCCCeEEEEEC---CCCeEEEEECC
Confidence 34556889999875 22 468889998776522 33333333 3666 6789999421 13688999999
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
|.+....|....+.. ....|..+.. .++.|||+.. + ..+.|..||+++++++++.... ..+ .++
T Consensus 114 t~~~~~~i~~g~~~~-~~~~p~~i~~--~~~~lyv~~~--~---~~~~v~viD~~t~~~~~~i~~g---~~p---~~i-- 177 (328)
T 3dsm_A 114 TYEITGYIECPDMDM-ESGSTEQMVQ--YGKYVYVNCW--S---YQNRILKIDTETDKVVDELTIG---IQP---TSL-- 177 (328)
T ss_dssp TTEEEEEEECTTCCT-TTCBCCCEEE--ETTEEEEEEC--T---TCCEEEEEETTTTEEEEEEECS---SCB---CCC--
T ss_pred CCeEEEEEEcCCccc-cCCCcceEEE--ECCEEEEEcC--C---CCCEEEEEECCCCeEEEEEEcC---CCc---cce--
Confidence 977544333210000 0001222222 5899999842 1 2458999999999977776543 222 222
Q ss_pred eeeeecCCeEEEEcccC----------CCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec
Q 012060 331 VDVDVDELTLFKICSKS----------GDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR 398 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~----------g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~ 398 (472)
+..-+++||+++-.+ +.+...|.. +++....-. ..... .-..++.. ++.||++.
T Consensus 178 --~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~---t~~v~~~~~----~~~g~-----~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 178 --VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE---TFTVEKQFK----FKLGD-----WPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp --EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT---TTEEEEEEE----CCTTC-----CCEEEEECTTSCEEEEES
T ss_pred --EEcCCCCEEEEECCCccCCccccCCceEEEEECC---CCeEEEEEe----cCCCC-----CceeEEEecCCCEEEEEc
Confidence 233468899887532 122211211 232221111 11111 23456666 67899887
Q ss_pred CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEee----eccceeEEeecC
Q 012060 399 GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSR----EDVEGIEVWESS 463 (472)
Q Consensus 399 g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~----~~~~~~~vw~~~ 463 (472)
+ .|.+|+.... ++.++.++.. .++....|++ -+.+|||+- ..-..|-||+..
T Consensus 244 ~-~v~~~d~~t~--------~~~~~~~~~~----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 244 N-DIWRMPVEAD--------RVPVRPFLEF----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S-SEEEEETTCS--------SCCSSCSBCC----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred c-EEEEEECCCC--------ceeeeeeecC----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 6 7777665311 1112222221 1456777877 478999997 667788898753
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.61 E-value=0.02 Score=57.89 Aligned_cols=258 Identities=13% Similarity=0.089 Sum_probs=130.0
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||... ........+-+.+.+++...+.+++.|+ .+| ++..||..+.+-.. .+......+.+++..
T Consensus 142 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s--~dg-----~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~ 212 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS--TDR-----TVRVWDIKKGCCTH--VFEGHNSTVRCLDIV 212 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEE--TTS-----CEEEEETTTTEEEE--EECCCSSCEEEEEEE
T ss_pred CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEe--CCC-----CEEEEECCCCcEEE--EECCCCCccEEEEEe
Confidence 4588888332 2222222333445556666555777777 455 45566666554222 121122233234444
Q ss_pred ---CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc--------------cceeEEecCCeEEEEEEe
Q 012060 228 ---PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV--------------GKLTWIPATGVVLGSAIA 289 (472)
Q Consensus 228 ---~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~--------------m~~~~~~~~g~Lyv~Gg~ 289 (472)
++.+.+ |+.+ .+|-.||..+.+...+.+...........+ .....+..++.++++|+.
T Consensus 213 ~~~~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 288 (464)
T 3v7d_B 213 EYKNIKYIVTGSRD----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288 (464)
T ss_dssp ESSSCEEEEEEETT----SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred cCCCCCEEEEEcCC----CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC
Confidence 445445 6544 468899998855443332211000000000 011112234555666663
Q ss_pred CCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecC
Q 012060 290 WGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDK 369 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~ 369 (472)
+ +.|..||.++++++.+.... ...+.+++... ++...++|+.++....-|+++ ...+..
T Consensus 289 d------~~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-----~~~~~~- 347 (464)
T 3v7d_B 289 D------NTLIVWDVAQMKCLYILSGH--------TDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN-----GELMYT- 347 (464)
T ss_dssp T------SCEEEEETTTTEEEEEECCC--------SSCEEEEEEET-TTTEEEEEETTSCEEEEETTT-----TEEEEE-
T ss_pred C------CeEEEEECCCCcEEEEecCC--------CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-----CcEEEE-
Confidence 3 46999999999988877654 12222222333 566777888887654333332 334443
Q ss_pred CCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceE
Q 012060 370 NPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRL 447 (472)
Q Consensus 370 ~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~ 447 (472)
+.... .......+.++.++++ .+.|.+|+-... +..+.- .......+..+...|..|
T Consensus 348 ---~~~h~-----~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~-------~~~~~~------~~~~~~~~~~~~~~~~~l 406 (464)
T 3v7d_B 348 ---LQGHT-----ALVGLLRLSDKFLVSAAADGSIRGWDANDY-------SRKFSY------HHTNLSAITTFYVSDNIL 406 (464)
T ss_dssp ---ECCCS-----SCEEEEEECSSEEEEEETTSEEEEEETTTC-------CEEEEE------ECTTCCCEEEEEECSSEE
T ss_pred ---EeCCC-----CcEEEEEEcCCEEEEEeCCCcEEEEECCCC-------ceeeee------cCCCCccEEEEEeCCCEE
Confidence 22222 1233333445444443 378999986422 111111 123344677888888877
Q ss_pred EEeeeccceeEEeecC
Q 012060 448 FVSREDVEGIEVWESS 463 (472)
Q Consensus 448 f~~~~~~~~~~vw~~~ 463 (472)
+..- ...|.||+..
T Consensus 407 ~~~~--dg~i~iwd~~ 420 (464)
T 3v7d_B 407 VSGS--ENQFNIYNLR 420 (464)
T ss_dssp EEEE--TTEEEEEETT
T ss_pred EEec--CCeEEEEECC
Confidence 7765 4689999854
No 62
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.58 E-value=0.036 Score=52.50 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=130.1
Q ss_pred cceeeccCCcEEEeee-CceEEeeccc-CCCCCcc-----ccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCC
Q 012060 133 TFTASSDDGSLWIAHG-GQISVYDWNL-SHSVTVR-----THLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 133 a~r~~~~~g~l~va~G-G~Ve~YDW~~-~~m~~~R-----~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
++...|. +.++++.+ |.|..||... ....... .+-..+.++++. ++..+++|+ .+| .+..||..
T Consensus 56 ~~~~~~~-~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~-----~i~~~d~~ 127 (337)
T 1gxr_A 56 AVTISNP-TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG--EAS-----TLSIWDLA 127 (337)
T ss_dssp EEEECSS-SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE--SSS-----EEEEEECC
T ss_pred EEEEecC-CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc--CCC-----cEEEEECC
Confidence 3444444 44442333 4587877433 2211111 122233344443 456667776 444 56677777
Q ss_pred CCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCe
Q 012060 205 SAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGV 282 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~ 282 (472)
+.+......+......+.+++.. ++. |++|+.+ ..|..||..+.+++..+... ......+.+.+ ++.
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~-~~~ 196 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSD----GNIAVWDLHNQTLVRQFQGH------TDGASCIDISN-DGT 196 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCC------SSCEEEEEECT-TSS
T ss_pred CCCcceeeecccCCCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCceeeeeecc------cCceEEEEECC-CCC
Confidence 76644433333333333335554 344 4446544 36889999986644433220 00112233333 555
Q ss_pred EEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCC
Q 012060 283 VLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDP 362 (472)
Q Consensus 283 Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~ 362 (472)
++++++. .+.|..||.++++.+.+...+. . -.+ ++.. -++.++++|+.++....-|++.-+ .
T Consensus 197 ~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~----~--v~~---~~~s-~~~~~l~~~~~~~~i~~~~~~~~~--~ 258 (337)
T 1gxr_A 197 KLWTGGL------DNTVRSWDLREGRQLQQHDFTS----Q--IFS---LGYC-PTGEWLAVGMESSNVEVLHVNKPD--K 258 (337)
T ss_dssp EEEEEET------TSEEEEEETTTTEEEEEEECSS----C--EEE---EEEC-TTSSEEEEEETTSCEEEEETTSSC--E
T ss_pred EEEEEec------CCcEEEEECCCCceEeeecCCC----c--eEE---EEEC-CCCCEEEEEcCCCcEEEEECCCCC--e
Confidence 5566553 3579999999999777664331 1 111 1122 366777888888765543443321 1
Q ss_pred cEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEE
Q 012060 363 WVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISR 439 (472)
Q Consensus 363 W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~ 439 (472)
. .+. .... .-..++.. ++++++++ ++.|.+|+-... +.++.. ...+.|..
T Consensus 259 ~-~~~-------~~~~----~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-------~~~~~~--------~~~~~v~~ 311 (337)
T 1gxr_A 259 Y-QLH-------LHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-------ASIFQS--------KESSSVLS 311 (337)
T ss_dssp E-EEC-------CCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEE--------ECSSCEEE
T ss_pred E-EEc-------CCcc----ceeEEEECCCCCEEEEecCCCcEEEEECCCC-------eEEEEe--------cCCCcEEE
Confidence 1 111 1110 11222222 34444443 488999986422 111111 13557888
Q ss_pred Eeec--CceEEEeeeccceeEEee
Q 012060 440 IDAG--GNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 440 ~~~g--g~r~f~~~~~~~~~~vw~ 461 (472)
+++- |..|++ =.+...|.||+
T Consensus 312 ~~~s~~~~~l~~-~~~dg~i~iw~ 334 (337)
T 1gxr_A 312 CDISVDDKYIVT-GSGDKKATVYE 334 (337)
T ss_dssp EEECTTSCEEEE-EETTSCEEEEE
T ss_pred EEECCCCCEEEE-ecCCCeEEEEE
Confidence 8875 444444 44556788997
No 63
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.56 E-value=0.044 Score=52.62 Aligned_cols=224 Identities=11% Similarity=0.092 Sum_probs=118.4
Q ss_pred ceeeeecCCCCccccCCCCcCcccceeEEEEe-C-CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcc-----c
Q 012060 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P-TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSK-----N 268 (472)
Q Consensus 196 ~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~-g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~-----~ 268 (472)
..+..+|+.+.+-...-+.... -.+ ++.. + ++||++... .+.|.+||+.+.+++..+... ..+. .
T Consensus 69 ~~v~~~d~~~~~~~~~~~~~~~--~~~-~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~ 140 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHNDLK--PFG-ATINNTTQTLWFGNTV---NSAVTAIDAKTGEVKGRLVLD--DRKRTEEVRP 140 (353)
T ss_dssp EEEEEECTTTCCEEEEEEESSC--CCS-EEEETTTTEEEEEETT---TTEEEEEETTTCCEEEEEESC--CCCCCSSCCC
T ss_pred ccEEEEcCCCCeEEEEEecCCC--cce-EEECCCCCEEEEEecC---CCEEEEEeCCCCeeEEEEecC--CCccccccCC
Confidence 4677778776653332221111 111 4443 3 458884322 348999999996654444331 1111 0
Q ss_pred ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCC
Q 012060 269 MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 269 v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g 348 (472)
..+....+.+-++.||+++.. ..+.|..||+++++++++..... .....++....+..||+... ++
T Consensus 141 ~~~~~~~~s~dg~~l~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~s~dg~~l~~~~~-~~ 206 (353)
T 3vgz_A 141 LQPRELVADDATNTVYISGIG-----KESVIWVVDGGNIKLKTAIQNTG--------KMSTGLALDSEGKRLYTTNA-DG 206 (353)
T ss_dssp CEEEEEEEETTTTEEEEEEES-----SSCEEEEEETTTTEEEEEECCCC--------TTCCCCEEETTTTEEEEECT-TS
T ss_pred CCCceEEECCCCCEEEEEecC-----CCceEEEEcCCCCceEEEecCCC--------CccceEEECCCCCEEEEEcC-CC
Confidence 112224455566778887642 13479999999999888876331 11122334666777887654 44
Q ss_pred CcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeEEEeeccccccccccCCcceeec
Q 012060 349 DIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRN 424 (472)
Q Consensus 349 ~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~ 424 (472)
.+...|+.+ ...+.. ......+....-..++.. +++||++.. +.|.+|+.... ++.++-
T Consensus 207 ~i~~~d~~~-----~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--------~~~~~~ 269 (353)
T 3vgz_A 207 ELITIDTAD-----NKILSR----KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--------NILAKV 269 (353)
T ss_dssp EEEEEETTT-----TEEEEE----EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--------CEEEEE
T ss_pred eEEEEECCC-----CeEEEE----EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--------cEEEEE
Confidence 433323322 222221 111000000122345554 567998854 78999976321 111221
Q ss_pred cccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 425 FVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 425 ~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
-++. +.-..++--|++||++-.+...|-||+...
T Consensus 270 ~~~~------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 270 AAPE------SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp ECSS------CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EcCC------CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 1111 122455667889999998889999998643
No 64
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.55 E-value=0.0036 Score=63.44 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=113.2
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccC-CCCcC
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP-SDPRI 216 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~-a~m~~ 216 (472)
+.++++++ |.|..||... ....+...+...+.+++. ++..++.|+ .+| ++..||..+.+-... ..+..
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s--~dg-----~i~vwd~~~~~~~~~~~~~~~ 254 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCS--KDR-----SIAVWDMASPTDITLRRVLVG 254 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC-CTTEEEEEE--TTS-----CEEEEECSSSSCCEEEEEECC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE-cCCEEEEee--CCC-----cEEEEeCCCCCCceeeeEecC
Confidence 44443333 4588888543 222222223333434444 566677777 454 455666554431100 11111
Q ss_pred cccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCcccc
Q 012060 217 YRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
....+.+++.-+..|++|+.+ ..|-.||..+.+++..+.... .....+..++.++++|+.+
T Consensus 255 ~~~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~l~~g~~d------ 315 (435)
T 1p22_A 255 HRAAVNVVDFDDKYIVSASGD----RTIKVWNTSTCEFVRTLNGHK---------RGIACLQYRDRLVVSGSSD------ 315 (435)
T ss_dssp CSSCEEEEEEETTEEEEEETT----SEEEEEETTTCCEEEEEECCS---------SCEEEEEEETTEEEEEETT------
T ss_pred CCCcEEEEEeCCCEEEEEeCC----CeEEEEECCcCcEEEEEcCCC---------CcEEEEEeCCCEEEEEeCC------
Confidence 223333355544455556554 478899999966544443210 1112223356667777643
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC----CCCcEEeecCCCC
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG----EDPWVYMEDKNPS 372 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e----~d~W~~~~~~~~~ 372 (472)
+.|..||.++++++.+..... .. |.....++..+++|+.+|....-|++.-+ ......+..
T Consensus 316 g~i~iwd~~~~~~~~~~~~h~--------~~---v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---- 380 (435)
T 1p22_A 316 NTIRLWDIECGACLRVLEGHE--------EL---VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT---- 380 (435)
T ss_dssp SCEEEEETTTCCEEEEECCCS--------SC---EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE----
T ss_pred CeEEEEECCCCCEEEEEeCCc--------Cc---EEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheee----
Confidence 469999999999887776441 11 11223378888899999876654554433 111112322
Q ss_pred cccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccc
Q 012060 373 MISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVR 409 (472)
Q Consensus 373 m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~ 409 (472)
+..... .=..++. +++.+++++ |.|.+|+-..
T Consensus 381 ~~~h~~----~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 381 LVEHSG----RVFRLQF-DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp ECCCSS----CCCCEEE-CSSCEEECCSSSEEEEEC---
T ss_pred ccCCCC----CeEEEEe-CCCEEEEEeCCCEEEEEECCC
Confidence 111111 1122333 666666655 8899998643
No 65
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.51 E-value=0.027 Score=55.08 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=114.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCc--cccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAH--WTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~--W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
++...+.|| .++ .+..||..+.. ......+......+.++... ++.|++|+.+ .+|-.||..+.++
T Consensus 108 ~~~~l~s~~--~d~-----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d----~~i~~wd~~~~~~ 176 (340)
T 1got_B 108 SGNYVACGG--LDN-----ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD----TTCALWDIETGQQ 176 (340)
T ss_dssp TSSEEEEEE--TTC-----EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETT----SCEEEEETTTTEE
T ss_pred CCCEEEEEe--CCC-----eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECC----CcEEEEECCCCcE
Confidence 566777777 454 34556654432 11111111111222224443 4555555443 4688999998654
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
+..+... ......+.+.+ ++.++++|+.+ ++|..||.++++++-+.... ...+..++..
T Consensus 177 ~~~~~~h------~~~v~~~~~~~-~~~~l~sg~~d------~~v~~wd~~~~~~~~~~~~h--------~~~v~~v~~~ 235 (340)
T 1got_B 177 TTTFTGH------TGDVMSLSLAP-DTRLFVSGACD------ASAKLWDVREGMCRQTFTGH--------ESDINAICFF 235 (340)
T ss_dssp EEEECCC------SSCEEEEEECT-TSSEEEEEETT------SCEEEEETTTCSEEEEECCC--------SSCEEEEEEC
T ss_pred EEEEcCC------CCceEEEEECC-CCCEEEEEeCC------CcEEEEECCCCeeEEEEcCC--------cCCEEEEEEc
Confidence 4333210 01112233333 56677777744 46999999999866666544 1112122223
Q ss_pred ecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEE-ECCEEEEecC--CeEEEeecccc
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHC-YKNQVFVGRG--GSLEVWSRVRE 410 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~-~~g~l~~~~g--~~~~v~~~~~~ 410 (472)
. ++.+++.|+.++....-|+++-. .+.. ...... .... .++. -+|+++++++ +.|.||+-...
T Consensus 236 p-~~~~l~s~s~d~~v~iwd~~~~~-----~~~~----~~~~~~---~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 236 P-NGNAFATGSDDATCRLFDLRADQ-----ELMT----YSHDNI---ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTTE-----EEEE----ECCTTC---CSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred C-CCCEEEEEcCCCcEEEEECCCCc-----EEEE----EccCCc---ccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 3 67788899998876544554321 1111 001110 0111 1221 2456666544 78999985422
Q ss_pred ccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEee
Q 012060 411 GRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWE 461 (472)
Q Consensus 411 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 461 (472)
.. -+.+-+ ..+.|..+++--| +++++=..-..|-||+
T Consensus 303 --------~~-~~~~~~-----h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 --------DR-AGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------CE-EEEEEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------cE-eeEeec-----CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 11 111222 3457988888644 4556666667788995
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.50 E-value=0.009 Score=58.46 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=83.8
Q ss_pred ccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCC-----------CcCcccceeEEEEeC--CeEEE-
Q 012060 170 NITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD-----------PRIYRATVTAIADSP--TTVFS- 233 (472)
Q Consensus 170 ~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~-----------m~~~R~~~~ava~l~--g~IYA- 233 (472)
.+.++++. ++.+++.|+ .+| .+..||..+.+...... +......+.+++... +.+++
T Consensus 45 ~v~~~~~s~~~~~~l~~~~--~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGG--SDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CEEEEEECTTTCCEEEEEE--TTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred cEEEEEEecCCCCEEEEEc--CCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 34344443 567777777 454 35556655544322211 011223333455543 33444
Q ss_pred EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEe--cCCeEEEEEEeCCCccccceEEEEcCCCCeeee
Q 012060 234 SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP--ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVW 311 (472)
Q Consensus 234 Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW 311 (472)
++.+ ..|-.||..+.+++..+.... ......+.+ .++.++++|+.+ +.|..||.++++.+.
T Consensus 118 ~~~d----~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 118 SSFD----KTLKVWDTNTLQTADVFNFEE-------TVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSH 180 (408)
T ss_dssp EETT----SEEEEEETTTTEEEEEEECSS-------CEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCE
T ss_pred EeCC----CeEEEeeCCCCccceeccCCC-------ceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceee
Confidence 6543 478899999865443333200 001122222 245566776643 469999999998777
Q ss_pred EEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 312 ETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 312 ~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
+.... ...+..++....+..|+++|+.++....-|++..
T Consensus 181 ~~~~~--------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 181 ILQGH--------RQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EECCC--------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred eecCC--------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence 66644 1222233344545558999999887665566543
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.45 E-value=0.016 Score=57.77 Aligned_cols=262 Identities=18% Similarity=0.145 Sum_probs=133.8
Q ss_pred CceEEeeccc-----CCCCCccccccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccc-----cCCCCcC
Q 012060 149 GQISVYDWNL-----SHSVTVRTHLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWT-----DPSDPRI 216 (472)
Q Consensus 149 G~Ve~YDW~~-----~~m~~~R~~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~-----~~a~m~~ 216 (472)
|.|..||... ......+.+-+.+.++++. ++.+++.|+ .+| ++..||..+.... .+..+..
T Consensus 57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s--~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS--EDC-----TVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE--TTS-----EEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe--CCC-----eEEEEEccCCCCccccCCceEEecC
Confidence 4588887432 1222223344455555554 567888887 455 4566776655431 2222222
Q ss_pred cccceeEEEEeCC--eEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCc
Q 012060 217 YRATVTAIADSPT--TVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAF 293 (472)
Q Consensus 217 ~R~~~~ava~l~g--~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~ 293 (472)
....+.+++...+ .+++ |+.+ .+|-.||..+.+++..+... -+......+.|.+ ++.++++|+.
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~---- 196 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCD----NVILVWDVGTGAAVLTLGPD----VHPDTIYSVDWSR-DGALICTSCR---- 196 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETT----SCEEEEETTTTEEEEEECTT----TCCSCEEEEEECT-TSSCEEEEET----
T ss_pred CCCeEEEEEECcCCCCEEEEEcCC----CEEEEEECCCCCccEEEecC----CCCCceEEEEECC-CCCEEEEEec----
Confidence 2233334555543 3555 6554 46889999997655554200 0111123344444 5555666653
Q ss_pred cccceEEEEcCCCCeeeeEE-cCCCCCCCCcccccccceeeeecCCeEEEEc---ccCCCcccccccccCCCCcEEeecC
Q 012060 294 GYSGYVRMWDPRSGEVVWET-NEPGSGRSARFGDSFADVDVDVDELTLFKIC---SKSGDIAMADLRNLGEDPWVYMEDK 369 (472)
Q Consensus 294 ~~~~sve~yDp~~~~~vW~~-~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG---g~~g~~~~~dl~s~e~d~W~~~~~~ 369 (472)
.+.|..||+++++++.+. ... ...+ +..++.. -++.++++| +.++.+..-|+++.+. +-....
T Consensus 197 --d~~i~iwd~~~~~~~~~~~~~~---~~~~----~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~~-- 263 (402)
T 2aq5_A 197 --DKRVRVIEPRKGTVVAEKDRPH---EGTR----PVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEE-PLSLQE-- 263 (402)
T ss_dssp --TSEEEEEETTTTEEEEEEECSS---CSSS----CCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSS-CSEEEE--
T ss_pred --CCcEEEEeCCCCceeeeeccCC---CCCc----ceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccC-CceEEe--
Confidence 357999999999988777 333 1111 1111123 367888787 5565544334443221 011111
Q ss_pred CCCcccCCCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc
Q 012060 370 NPSMISSSGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN 445 (472)
Q Consensus 370 ~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~ 445 (472)
+.... .-..++.. +..||+++ ++.|.+|+-... +..++. +-.. ...+.|..+++-.|
T Consensus 264 ---~~~~~-----~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~-------~~~~~~-l~~~---~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 264 ---LDTSS-----GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE-------APFLHY-LSMF---SSKESQRGMGYMPK 324 (402)
T ss_dssp ---CCCCS-----SCEEEEEETTTTEEEEEETTCSCEEEEEECSS-------TTCEEE-EEEE---CCSSCCSEEEECCG
T ss_pred ---ccCCC-----ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC-------CcceEe-eccc---ccCCcccceEEecc
Confidence 11111 12223333 34677665 588999986422 100011 0011 13457888888877
Q ss_pred eEEEeeeccceeEEeecC
Q 012060 446 RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 446 r~f~~~~~~~~~~vw~~~ 463 (472)
+.++.-.++ .+-+|+-.
T Consensus 325 ~~~~~s~~~-~~~~~~l~ 341 (402)
T 2aq5_A 325 RGLEVNKCE-IARFYKLH 341 (402)
T ss_dssp GGSCGGGTE-EEEEEEEE
T ss_pred cccceecce-eEEEEEcC
Confidence 766665554 67778743
No 68
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.42 E-value=0.011 Score=56.85 Aligned_cols=220 Identities=12% Similarity=0.149 Sum_probs=115.9
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcc-------cceeEEEEe--CCeEEEEecCCCCCceeEEEeCC
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYR-------ATVTAIADS--PTTVFSSLVCPHKENSVLLIDKS 250 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R-------~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~ 250 (472)
.+|+.+. .++ .+..||+.+.+-...-+..... ....+++.. +++||++... ....|.+||+.
T Consensus 102 ~l~v~~~--~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~i~~~d~~ 172 (353)
T 3vgz_A 102 TLWFGNT--VNS-----AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG--KESVIWVVDGG 172 (353)
T ss_dssp EEEEEET--TTT-----EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES--SSCEEEEEETT
T ss_pred EEEEEec--CCC-----EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC--CCceEEEEcCC
Confidence 4787766 332 5678888766532211111100 011124443 3468884321 13568999999
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
+.+.+..+.. . ...+....+.+-++.||++.. .+.|..||+.+++++|+...+. ..+ .+...+
T Consensus 173 ~~~~~~~~~~---~---~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~--~~~--~~~~~~ 235 (353)
T 3vgz_A 173 NIKLKTAIQN---T---GKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLD--DGK--EHFFIN 235 (353)
T ss_dssp TTEEEEEECC---C---CTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCC--SSS--CCCEEE
T ss_pred CCceEEEecC---C---CCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCC--CCC--Ccccce
Confidence 9765544431 0 011334455566677887632 3578899999999888877531 101 111223
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeecc
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~ 408 (472)
++....++.||+.+..++.+...|+. +.+....-+ .... ....+.--+++||++. ++.|.+|+..
T Consensus 236 ~~~s~dg~~l~~~~~~~~~v~~~d~~---~~~~~~~~~------~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKAAEVLVVDTR---NGNILAKVA------APES----LAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEETTTTEEEEEESSSSEEEEEETT---TCCEEEEEE------CSSC----CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECC---CCcEEEEEE------cCCC----ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 34566677899887655544433332 222222111 1111 1222222245699886 4889999763
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeec
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSRED 453 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~ 453 (472)
.. ++.+. + ..++.+..+++ -|.+|||+..+
T Consensus 303 ~~--------~~~~~-~------~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 303 SY--------KVVKT-F------DTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TT--------EEEEE-E------ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CC--------eEEEE-E------ecCCCCCeEEEcCCCCEEEEEEcc
Confidence 21 11111 1 12335676766 57889999876
No 69
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.42 E-value=0.016 Score=56.93 Aligned_cols=215 Identities=11% Similarity=0.015 Sum_probs=117.0
Q ss_pred cceeeeecCCCCccccCC-----CCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccc
Q 012060 195 YDLSSSRHVASAHWTDPS-----DPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNM 269 (472)
Q Consensus 195 l~sve~ydp~t~~W~~~a-----~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v 269 (472)
-.++..|||.+.++..-- ......... +++..+++||+.... .++|.++|+.|.+.+..|.. . .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~-~i~~~~~~lyv~~~~---~~~v~viD~~t~~~~~~i~~---~----~ 84 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQ-SMVIRDGIGWIVVNN---SHVIFAIDINTFKEVGRITG---F----T 84 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEE-EEEEETTEEEEEEGG---GTEEEEEETTTCCEEEEEEC---C----S
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccce-EEEEECCEEEEEEcC---CCEEEEEECcccEEEEEcCC---C----C
Confidence 357889999998875421 000011112 377789999994332 46899999999775555521 0 1
Q ss_pred cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCC
Q 012060 270 AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSG 348 (472)
Q Consensus 270 ~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g 348 (472)
.|..+.. .-++.||++.. ..+.|..||+.+++++++............-.++ +..+++||+..- .++
T Consensus 85 ~p~~i~~-~~~g~lyv~~~------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i-----~~~~~~lyv~~~~~~~ 152 (328)
T 3dsm_A 85 SPRYIHF-LSDEKAYVTQI------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQM-----VQYGKYVYVNCWSYQN 152 (328)
T ss_dssp SEEEEEE-EETTEEEEEEB------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCE-----EEETTEEEEEECTTCC
T ss_pred CCcEEEE-eCCCeEEEEEC------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceE-----EEECCEEEEEcCCCCC
Confidence 1211111 14679999864 2358999999999988776533100000112333 347999998863 344
Q ss_pred CcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecCC------------eEEEeeccccccccc
Q 012060 349 DIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRGG------------SLEVWSRVREGRNRS 415 (472)
Q Consensus 349 ~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g~------------~~~v~~~~~~~~~~~ 415 (472)
.+...|+. +++....-+ ... .-.++++ -+|++|++..+ .|.+|+.-..
T Consensus 153 ~v~viD~~---t~~~~~~i~------~g~-----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----- 213 (328)
T 3dsm_A 153 RILKIDTE---TDKVVDELT------IGI-----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----- 213 (328)
T ss_dssp EEEEEETT---TTEEEEEEE------CSS-----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-----
T ss_pred EEEEEECC---CCeEEEEEE------cCC-----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-----
Confidence 43333333 232222111 111 0112332 35788888653 5777765311
Q ss_pred cCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeec
Q 012060 416 CSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 416 ~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~ 462 (472)
++.++ + .-..+.....+++- |++||++-. .|-+|+.
T Consensus 214 ---~v~~~-~----~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~ 251 (328)
T 3dsm_A 214 ---TVEKQ-F----KFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPV 251 (328)
T ss_dssp ---EEEEE-E----ECCTTCCCEEEEECTTSCEEEEESS---SEEEEET
T ss_pred ---eEEEE-E----ecCCCCCceeEEEecCCCEEEEEcc---EEEEEEC
Confidence 12111 1 00123357788887 889999854 5566764
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.39 E-value=0.023 Score=56.78 Aligned_cols=232 Identities=15% Similarity=0.151 Sum_probs=119.9
Q ss_pred cceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeC
Q 012060 171 ITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDK 249 (472)
Q Consensus 171 v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp 249 (472)
+.++++. ++.++++|+ .+| .+..||..+.+-.. .+......+.+++..+..|++|+.+ ..|-.||.
T Consensus 137 v~~v~~s~~~~~l~~~~--~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d----g~i~i~d~ 203 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGL--GNG-----LVDIYDVESQTKLR--TMAGHQARVGCLSWNRHVLSSGSRS----GAIHHHDV 203 (401)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCCEEE--EECCCSSCEEEEEEETTEEEEEETT----SEEEEEET
T ss_pred EEEEEECCCCCEEEEEC--CCC-----eEEEEECcCCeEEE--EecCCCCceEEEEECCCEEEEEcCC----CCEEEEec
Confidence 3344443 566777777 454 45667766554322 2222233343455544444446544 47889999
Q ss_pred CCcc-cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 250 STLQ-ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 250 ~t~~-~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
.+.+ ++..+.. +......+.+.+ ++.++++|+.+ +.|..||.++++.+.+.... ...+
T Consensus 204 ~~~~~~~~~~~~------~~~~v~~~~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~--------~~~v 262 (401)
T 4aez_A 204 RIANHQIGTLQG------HSSEVCGLAWRS-DGLQLASGGND------NVVQIWDARSSIPKFTKTNH--------NAAV 262 (401)
T ss_dssp TSSSCEEEEEEC------CSSCEEEEEECT-TSSEEEEEETT------SCEEEEETTCSSEEEEECCC--------SSCC
T ss_pred ccCcceeeEEcC------CCCCeeEEEEcC-CCCEEEEEeCC------CeEEEccCCCCCccEEecCC--------cceE
Confidence 8522 1111111 001112233444 66677777643 46999999999877777655 2334
Q ss_pred cceeeeecCCeEEEEcc--cCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECC-EEEEe-c--CCe
Q 012060 329 ADVDVDVDELTLFKICS--KSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKN-QVFVG-R--GGS 401 (472)
Q Consensus 329 ~d~~v~~~~~~iy~vGg--~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g-~l~~~-~--g~~ 401 (472)
.+++....+..|++.|+ .++.+..-|+++ ...+.. +.... .-..++. -++ .|+++ + .+.
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-----~~~~~~----~~~~~-----~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-----GARVNT----VDAGS-----QVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTT-----CCEEEE----EECSS-----CEEEEEECSSSSEEEEEECTTTCE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCC-----CCEEEE----EeCCC-----cEEEEEECCCCCeEEEEeecCCCc
Confidence 44445666778898886 666544334332 222222 11111 0112222 134 44443 2 589
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecC
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
|.||+-... .... . ..+- ...+.|..+++- |..|+..-.| ..|-||+..
T Consensus 329 i~v~~~~~~----~~~~-~--~~~~-----~h~~~v~~~~~s~dg~~l~s~~~d-g~i~iw~~~ 379 (401)
T 4aez_A 329 LSIWSYSSS----GLTK-Q--VDIP-----AHDTRVLYSALSPDGRILSTAASD-ENLKFWRVY 379 (401)
T ss_dssp EEEEEEETT----EEEE-E--EEEE-----CCSSCCCEEEECTTSSEEEEECTT-SEEEEEECC
T ss_pred EEEEecCCc----ccee-E--EEec-----CCCCCEEEEEECCCCCEEEEEeCC-CcEEEEECC
Confidence 999986421 0000 0 0011 134568777774 6666665544 679999854
No 71
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.39 E-value=0.049 Score=54.85 Aligned_cols=264 Identities=13% Similarity=0.107 Sum_probs=131.1
Q ss_pred eeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccC
Q 012060 136 ASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP 211 (472)
Q Consensus 136 ~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~ 211 (472)
..|. +.+++.++ |.|..||+.. ....+...+-..+.++++. ++.+.+.|+ .+| ++..||..+.+ .+
T Consensus 116 ~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs--~D~-----~i~iwd~~~~~--~~ 185 (410)
T 1vyh_C 116 FHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS--ADM-----TIKLWDFQGFE--CI 185 (410)
T ss_dssp ECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----CCCEEETTSSC--EE
T ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe--CCC-----eEEEEeCCCCc--ee
Confidence 3344 44553443 4588888655 3333333333444445543 567778887 454 34456655433 22
Q ss_pred CCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEe
Q 012060 212 SDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA 289 (472)
Q Consensus 212 a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~ 289 (472)
..+......+.+++... +..++ |+.+ .+|-.||..+.+.+..+... ..|- ..-...-++.++++|+.
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D----~~i~~wd~~~~~~~~~~~~h--~~~v-----~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRD----KTIKMWEVQTGYCVKTFTGH--REWV-----RMVRPNQDGTLIASCSN 254 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETT----SEEEEEETTTCCEEEEEECC--SSCE-----EEEEECTTSSEEEEEET
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEEEEeCC--CccE-----EEEEECCCCCEEEEEcC
Confidence 22322223343455543 34444 6544 47889999985533322110 1111 11112356777888774
Q ss_pred CCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee-------------------ecCCeEEEEcccCCCc
Q 012060 290 WGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD-------------------VDELTLFKICSKSGDI 350 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~-------------------~~~~~iy~vGg~~g~~ 350 (472)
+ ++|.+||.++++++=+..... ..+..++.. ...+.+++.|+.++..
T Consensus 255 D------~~v~vwd~~~~~~~~~~~~h~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 255 D------QTVRVWVVATKECKAELREHR--------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp T------SCEEEEETTTCCEEEEECCCS--------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred C------CeEEEEECCCCceeeEecCCC--------ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 4 469999999987443333221 000000001 1125677888888765
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEEE-CCEEEEecC--CeEEEeeccccccccccCCcceeeccc
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHCY-KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFV 426 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~~-~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~ 426 (472)
..-|+++ ..++.. +.... ..+ .++.. +|+.+++++ +.|-+|+-... +..+. +-
T Consensus 321 ~iwd~~~-----~~~~~~----~~~h~-----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--------~~~~~-~~ 377 (410)
T 1vyh_C 321 KMWDVST-----GMCLMT----LVGHD-----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--------RCMKT-LN 377 (410)
T ss_dssp EEEETTT-----TEEEEE----EECCS-----SCEEEEEECSSSSCEEEEETTTEEEEECCTTS--------CCCEE-EE
T ss_pred EEEECCC-----CceEEE----EECCC-----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ceEEE-Ec
Confidence 4434432 223222 11111 111 22222 344444433 77999975311 11111 11
Q ss_pred cccccCCCCceEEEeecCce-EEEeeeccceeEEeec
Q 012060 427 DRVEDSGRGAISRIDAGGNR-LFVSREDVEGIEVWES 462 (472)
Q Consensus 427 ~~~~~~~~~~i~~~~~gg~r-~f~~~~~~~~~~vw~~ 462 (472)
+ ..+.|+.+++.-+. ++++=..-..|-||+.
T Consensus 378 ~-----h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 A-----HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp C-----CSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred C-----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 1 34579999997653 5667677788999973
No 72
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.33 E-value=0.013 Score=58.09 Aligned_cols=216 Identities=16% Similarity=0.139 Sum_probs=114.2
Q ss_pred CceEEeeccc-CCCCCcc----ccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCccccee
Q 012060 149 GQISVYDWNL-SHSVTVR----THLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVT 222 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R----~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ 222 (472)
|.|..||... ......+ .|-+.+.++++. ++...+.|+ .+| ++..||..+.+- +..+......+.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs--~d~-----~i~iwd~~~~~~--~~~~~~h~~~V~ 173 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS--KDI-----CIKVWDLAQQVV--LSSYRAHAAQVT 173 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTTEE--EEEECCCSSCEE
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe--CCC-----eEEEEECCCCcE--EEEEcCcCCceE
Confidence 4588877544 3322222 122334455543 567777787 455 456677665542 222222223333
Q ss_pred EEEEe-CC-eEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 223 AIADS-PT-TVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 223 ava~l-~g-~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
+++.. ++ .+++ |+.+ .+|-.||..+.+++.++.... .......+.+.+.++.++|+|+.+ +.|
T Consensus 174 ~~~~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~l~sg~~d------g~v 239 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSED----NRILLWDTRCPKPASQIGCSA----PGYLPTSLAWHPQQSEVFVFGDEN------GTV 239 (344)
T ss_dssp EEEECSSCTTEEEEEETT----SCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETT------SEE
T ss_pred EEEecCCCCCceeeeccc----cccccccccccceeeeeecce----eeccceeeeecCCCCcceEEeccC------CcE
Confidence 35543 23 4777 6554 468899999977666554311 111123344556678888888743 479
Q ss_pred EEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCC
Q 012060 300 RMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGN 379 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~ 379 (472)
.+||.++++++.++... ...+-.++..-.+..+.+.|+.|+....-|+++ ...+. +..-..
T Consensus 240 ~~wd~~~~~~~~~~~~h--------~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-----~~~~~-----~~~H~~- 300 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSAVH--------SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-----SELFR-----SQAHRD- 300 (344)
T ss_dssp EEEESCC--CCEEEECC--------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-----CEEEE-----ECCCSS-
T ss_pred EEEECCCCcEEEEEcCC--------CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-----CcEEE-----EcCCCC-
Confidence 99999999988887755 122222223444557778888887654334332 12222 111111
Q ss_pred CCCcCeEEEEE--CCEEEEec--CCeEEEeeccc
Q 012060 380 NNGENKLIHCY--KNQVFVGR--GGSLEVWSRVR 409 (472)
Q Consensus 380 ~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~ 409 (472)
.=..|+.. +.+|++++ .+.|-+|.-..
T Consensus 301 ---~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 301 ---FVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ---CEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ---CEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 01122222 34677765 48899997653
No 73
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.32 E-value=0.028 Score=53.92 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=58.5
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
+.++++|+ .+| .+..||..+.+- +..+......+.+++.. ++.+++ |+.+ ..|-.||..+.+++
T Consensus 85 ~~~l~~~~--~dg-----~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~ 151 (366)
T 3k26_A 85 HPLLAVAG--SRG-----IIRIINPITMQC--IKHYVGHGNAINELKFHPRDPNLLLSVSKD----HALRLWNIQTDTLV 151 (366)
T ss_dssp CEEEEEEE--TTC-----EEEEECTTTCCE--EEEEESCCSCEEEEEECSSCTTEEEEEETT----SCEEEEETTTTEEE
T ss_pred CCEEEEec--CCC-----EEEEEEchhceE--eeeecCCCCcEEEEEECCCCCCEEEEEeCC----CeEEEEEeecCeEE
Confidence 35777777 454 456677665432 22222222333345555 445555 6554 46889999986655
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
..+.... -.......+.+.+ ++..+++|+.+ +.|..||.++++.
T Consensus 152 ~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~ 195 (366)
T 3k26_A 152 AIFGGVE---GHRDEVLSADYDL-LGEKIMSCGMD------HSLKLWRINSKRM 195 (366)
T ss_dssp EEECSTT---SCSSCEEEEEECT-TSSEEEEEETT------SCEEEEESCSHHH
T ss_pred EEecccc---cccCceeEEEECC-CCCEEEEecCC------CCEEEEECCCCcc
Confidence 5542100 1111223344444 45556666643 4699999998863
No 74
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.29 E-value=0.0093 Score=59.15 Aligned_cols=194 Identities=11% Similarity=0.083 Sum_probs=105.9
Q ss_pred ccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC--CeEEE-EecCCCCCceeE
Q 012060 170 NITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP--TTVFS-SLVCPHKENSVL 245 (472)
Q Consensus 170 ~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~~~~~l~sVE 245 (472)
.+.++++. ++..++.|+ .+| ++..||..+.+-.. .+......+.+++... +.+++ ++.+ .+|-
T Consensus 141 ~V~~v~~spdg~~l~sgs--~dg-----~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~~~s~~~d----g~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGG--KDF-----SVKVWDLSQKAVLK--SYNAHSSEVNCVAACPGKDTIFLSCGED----GRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEE--TTS-----CEEEEETTTTEEEE--EECCCSSCEEEEEECTTCSSCEEEEETT----SCEE
T ss_pred CEEEEEECCCCCEEEEEe--CCC-----eEEEEECCCCcEEE--EEcCCCCCEEEEEEccCCCceeeeeccC----CceE
Confidence 34445543 567777777 455 35567776654322 2222222333355543 24566 6554 3688
Q ss_pred EEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccc
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFG 325 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~ 325 (472)
.||..+.+++..+... -.......+.+.+-++.++++|+.+ +.|.+||.++++.+-+.... .
T Consensus 208 ~wd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~--------~ 269 (357)
T 4g56_B 208 LWDTRKPKPATRIDFC----ASDTIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVH--------S 269 (357)
T ss_dssp ECCTTSSSCBCBCCCT----TCCSCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCC--------S
T ss_pred EEECCCCceeeeeeec----cccccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEecc--------c
Confidence 9999986654433221 1111223445556677888887743 46999999999877666544 1
Q ss_pred ccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEecC--Ce
Q 012060 326 DSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGRG--GS 401 (472)
Q Consensus 326 ~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~g--~~ 401 (472)
..+-.++....++.+.+.|+.|+....-|++ + ...+.. +.... .=..|+. .+++++++++ +.
T Consensus 270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~---~--~~~~~~----~~H~~-----~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 270 QNITGLAYSYHSSPFLASISEDCTVAVLDAD---F--SEVFRD----LSHRD-----FVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTT---S--CEEEEE----CCCSS-----CEEEEEECSSSTTEEEEEETTSC
T ss_pred eeEEEEEEcCCCCCEEEEEeCCCEEEEEECC---C--CcEeEE----CCCCC-----CEEEEEEeCCCCCEEEEEcCCCe
Confidence 2222222344556777888888765433333 2 223332 11111 1123343 2677777655 88
Q ss_pred EEEeecc
Q 012060 402 LEVWSRV 408 (472)
Q Consensus 402 ~~v~~~~ 408 (472)
|-+|+-.
T Consensus 336 v~iW~~~ 342 (357)
T 4g56_B 336 VLHHHLP 342 (357)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999864
No 75
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.27 E-value=0.025 Score=56.27 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=99.9
Q ss_pred EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC-ee
Q 012060 231 VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG-EV 309 (472)
Q Consensus 231 IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~-~~ 309 (472)
|+.|+.+ .+|-.||..+.+.+..++..... -+....+.+.+.+.++.++++|+.++ +|..||.+.. ++
T Consensus 173 l~s~s~D----~~i~~wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 173 LITGSGD----QTCVLWDVTTGQRISIFGSEFPS-GHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRA 241 (380)
T ss_dssp EEEECTT----SCEEEECTTTCCEEEEECCCSSS-SCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCC
T ss_pred EEEECCC----CcEEEEEcCCCcEEEEeecccCC-CCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcc
Confidence 5545443 47889999986654444321100 01111223334445778888887544 6999999844 43
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH- 388 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~- 388 (472)
+-+.... ...+-.++... ++..++.|+.|+....-|+++-+ +-..+............ .-..++
T Consensus 242 ~~~~~~h--------~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~----~v~~~~~ 306 (380)
T 3iz6_a 242 VRTYHGH--------EGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELP----IVTSVAF 306 (380)
T ss_dssp CEEECCC--------SSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSC----SCSEEEE
T ss_pred eEEECCc--------CCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccC----ceEEEEE
Confidence 3444332 11122222233 67788899999876544555321 00011100000000000 011222
Q ss_pred EECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeecCCC
Q 012060 389 CYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 389 ~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~~ 465 (472)
.-+|++++++ +|.|.+|+-... +.+ +. ++.......+.|+.+++--| +++++=..-..|-||+.+..
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~-------~~~-~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLA-------EMV-LN--LGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTC-------CEE-EE--ECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCCEEEEEECCCCEEEEECCCC-------ceE-EE--EecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 2355555555 388999985321 111 11 11111234567888888543 45666666778999986543
No 76
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.27 E-value=0.024 Score=56.09 Aligned_cols=271 Identities=13% Similarity=0.045 Sum_probs=119.7
Q ss_pred EEEeeeCceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecc-eeeeecCCCCc--cccCCCCcCc
Q 012060 143 LWIAHGGQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYD-LSSSRHVASAH--WTDPSDPRIY 217 (472)
Q Consensus 143 l~va~GG~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~-sve~ydp~t~~--W~~~a~m~~~ 217 (472)
+|+..+|.-....|.+ +..+ ..+-..+.++++ -||.+.|.|+ .+.....+ ++..|+..+.. ..........
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p--~~H~~~V~~v~fSpDG~~las~s--~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~ 93 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP--ACMEVQIGAVRYRRDGALLLAAS--SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT 93 (357)
T ss_dssp ------------------------CCCSEEEEEEECSSSCEEEEEE--CSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred eEEecCCCccccccCCCCCCc--ccccCCEEEEEECCCCCEEEEEc--CCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence 3433334333333776 3222 222233444444 4677888777 33322212 34455443321 1122222222
Q ss_pred ccceeEEEEeC-CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCcccc
Q 012060 218 RATVTAIADSP-TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 218 R~~~~ava~l~-g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
...+.+++... +.+.+++.+ .+|..||..+.+.......... -+.-+-..+.+. -++.++++|+.+
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~d----g~v~lWd~~~~~~~~~~~~~~~--~h~~~V~~v~~s-pdg~~l~sgs~d------ 160 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDS----GAVELWEILEKESLLVNKFAKY--EHDDIVKTLSVF-SDGTQAVSGGKD------ 160 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETT----SCEEEC--------CCCCEEEC--CCSSCEEEEEEC-SSSSEEEEEETT------
T ss_pred CCCEEEEEEcCCCCEEEEECC----CEEEEeeccccceeEEEeeccC--CCCCCEEEEEEC-CCCCEEEEEeCC------
Confidence 33344466554 456665443 3688999988442111100000 000011222233 356666777744
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS 376 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~ 376 (472)
+.|..||.++++++.+..... ..+-.++....+..+++.|+.++....-|+++-+ .+.. +...
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~--------~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-----~~~~----~~~~ 223 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHS--------SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-----PATR----IDFC 223 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCS--------SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-----CBCB----CCCT
T ss_pred CeEEEEECCCCcEEEEEcCCC--------CCEEEEEEccCCCceeeeeccCCceEEEECCCCc-----eeee----eeec
Confidence 469999999999887776541 1222222344456788899988765443444321 1111 1111
Q ss_pred CCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEe
Q 012060 377 SGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVS 450 (472)
Q Consensus 377 ~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~ 450 (472)
... ..-..++.. ++++++++ .+.|.+|+--.. +. .+.+-+ ..+.|+.++|- |.+++++
T Consensus 224 ~~~--~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------~~-~~~~~~-----~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 224 ASD--TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------DS-AQTSAV-----HSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TCC--SCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------GG-CEEECC-----CSSCEEEEEECSSSSCCEEE
T ss_pred ccc--ccccchhhhhcccceEEEeecccceeEEECCCC--------cE-eEEEec-----cceeEEEEEEcCCCCCEEEE
Confidence 100 011122332 46677764 478999975321 11 111111 34578888884 6678888
Q ss_pred eeccceeEEeecC
Q 012060 451 REDVEGIEVWESS 463 (472)
Q Consensus 451 ~~~~~~~~vw~~~ 463 (472)
=.+-..|-||+..
T Consensus 288 gs~D~~i~iwd~~ 300 (357)
T 4g56_B 288 ISEDCTVAVLDAD 300 (357)
T ss_dssp EETTSCEEEECTT
T ss_pred EeCCCEEEEEECC
Confidence 7777889999854
No 77
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.23 E-value=0.027 Score=55.65 Aligned_cols=210 Identities=13% Similarity=0.130 Sum_probs=112.2
Q ss_pred CcEEEeee-CceEEee-------ccc-CCCCCc--cccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC--Cc
Q 012060 141 GSLWIAHG-GQISVYD-------WNL-SHSVTV--RTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AH 207 (472)
Q Consensus 141 g~l~va~G-G~Ve~YD-------W~~-~~m~~~--R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~ 207 (472)
+.+|+... |.+..|| |.. ...+.. +... ..+..++.+|+ |. .+| .+-.+|+.+ ..
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~~~~~~~v~~-g~--~~g-----~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----APTTAFGAAVV-GG--DNG-----RVSAVLMEQGQMI 211 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----CCEEETTEEEE-CC--TTT-----EEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----CcEEECCEEEE-Ec--CCC-----EEEEEECCCCcEE
Confidence 55663322 4588888 876 322221 1111 23345777666 43 233 355666653 34
Q ss_pred cccCCCCcCcc--------cceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec
Q 012060 208 WTDPSDPRIYR--------ATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA 279 (472)
Q Consensus 208 W~~~a~m~~~R--------~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~ 279 (472)
|.......... ... ..+..++.||++..+ ..+-+||+.+ |+ -.|+.-.+....-...
T Consensus 212 w~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~v~~~~~~----g~l~~~d~~t-------G~---~~w~~~~~~~~~~~~~ 276 (376)
T 3q7m_A 212 WQQRISQATGSTEIDRLSDVDT-TPVVVNGVVFALAYN----GNLTALDLRS-------GQ---IMWKRELGSVNDFIVD 276 (376)
T ss_dssp EEEECCC-----------CCCC-CCEEETTEEEEECTT----SCEEEEETTT-------CC---EEEEECCCCEEEEEEE
T ss_pred EEEecccCCCCcccccccccCC-CcEEECCEEEEEecC----cEEEEEECCC-------Cc---EEeeccCCCCCCceEE
Confidence 66532211000 111 134568899996433 3578999998 44 3376543322223346
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.||++.. .+.+.+||+++++++|+..... . +.... .++.++.||+ +..+|.+...|.++ +
T Consensus 277 ~~~l~~~~~-------~g~l~~~d~~tG~~~w~~~~~~---~-~~~~~-----~~~~~~~l~v-~~~~g~l~~~d~~t-G 338 (376)
T 3q7m_A 277 GNRIYLVDQ-------NDRVMALTIDGGVTLWTQSDLL---H-RLLTS-----PVLYNGNLVV-GDSEGYLHWINVED-G 338 (376)
T ss_dssp TTEEEEEET-------TCCEEEEETTTCCEEEEECTTT---T-SCCCC-----CEEETTEEEE-ECTTSEEEEEETTT-C
T ss_pred CCEEEEEcC-------CCeEEEEECCCCcEEEeecccC---C-CcccC-----CEEECCEEEE-EeCCCeEEEEECCC-C
Confidence 889998642 3469999999999999987431 1 11122 2455889885 44455444433332 1
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEee
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWS 406 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~ 406 (472)
+-.|..-.+ ... .....+..+|.||+... |.|..|+
T Consensus 339 ~~~~~~~~~------~~~-----~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 339 RFVAQQKVD------SSG-----FQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CEEEEEECC------TTC-----BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred cEEEEEecC------CCc-----ceeCCEEECCEEEEEeCCCEEEEEe
Confidence 222543221 111 23344567999999854 6787775
No 78
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.22 E-value=0.19 Score=49.51 Aligned_cols=237 Identities=14% Similarity=0.067 Sum_probs=122.8
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
-++.++++|+ .+| .+..||..+.+-... +......+.+++.. ++.+.+ |+.+ .+|-.||..+.+.
T Consensus 107 ~~~~~l~~~~--~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d----~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 107 LQMRRFILGT--TEG-----DIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQD----MQLKIWSVKDGSN 173 (420)
T ss_dssp SSSCEEEEEE--TTS-----CEEEECTTSCEEEEE--TTSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTCCC
T ss_pred cCCCEEEEEE--CCC-----CEEEEeCCCcceeee--cccccCccEEEEECCCCCEEEEEeCC----CeEEEEeCCCCcC
Confidence 4677888887 454 455666665443222 11222333345555 344444 6544 4789999998554
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcc----------
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARF---------- 324 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~---------- 324 (472)
+..+.. +..+...+.+.+ ++.++++|+.+ ++|.+||.++++.+.+...+......-.
T Consensus 174 ~~~~~~------h~~~v~~~~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 174 PRTLIG------HRATVTDIAIID-RGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240 (420)
T ss_dssp CEEEEC------CSSCEEEEEEET-TTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred ceEEcC------CCCcEEEEEEcC-CCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence 333321 011113344554 45555666643 4699999999998888775310000000
Q ss_pred ------cccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCE-EEE
Q 012060 325 ------GDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQ-VFV 396 (472)
Q Consensus 325 ------~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~-l~~ 396 (472)
...+..++... ++.+.++|+.++....-|+++-+ .+.. ....-.+ .-..++.. +++ +++
T Consensus 241 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~----~~~~~~~---~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKE-----QTIQ----LPSKFTC---SCNSLTVDGNNANYIY 307 (420)
T ss_dssp SCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCC-----EEEE----ECCTTSS---CEEEEEECSSCTTEEE
T ss_pred eeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCc-----eeEE----cccccCC---CceeEEEeCCCCCEEE
Confidence 00011111122 66777888888775544544322 1111 1111100 11222322 233 444
Q ss_pred ecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 397 GRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 397 ~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
+++ |.|.+|+--.. ...-..++. ..+..|+.+.+--++++++=.+...|-||+...
T Consensus 308 ~g~~dg~i~vwd~~~~----~~~~~~~~~--------~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSP----ECPVGEFLI--------NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEETTSEEEEEETTCT----TSCSEEEEE--------STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred EEeCCCeEEEEEcCCC----cCchhhhhc--------cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 433 89999976421 000111111 245678888887778888888888999999655
No 79
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.22 E-value=0.012 Score=56.57 Aligned_cols=195 Identities=12% Similarity=0.052 Sum_probs=116.5
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+-++.||...| ..|. +++..+|+.+.+-..--++...-.+. +++..++.||+.-+ ..+.+-+||+.|.
T Consensus 25 GL~~~~~~LyestG--~~g~---S~v~~vD~~tgkv~~~~~l~~~~fge-Gi~~~~~~ly~ltw---~~~~v~v~D~~tl 95 (243)
T 3mbr_X 25 GLFYLRGHLYESTG--ETGR---SSVRKVDLETGRILQRAEVPPPYFGA-GIVAWRDRLIQLTW---RNHEGFVYDLATL 95 (243)
T ss_dssp EEEEETTEEEEEEC--CTTS---CEEEEEETTTCCEEEEEECCTTCCEE-EEEEETTEEEEEES---SSSEEEEEETTTT
T ss_pred cEEEECCEEEEECC--CCCC---ceEEEEECCCCCEEEEEeCCCCccee-EEEEeCCEEEEEEe---eCCEEEEEECCcC
Confidence 45567899999988 4443 46778899988765544444333344 38889999999422 3578999999998
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC-cccccccce
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA-RFGDSFADV 331 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~-R~~~~~~d~ 331 (472)
+++.+|.-. +..|... .-++.||++ +| .+.|..+||.|.+++=+ ++......+ +.---+
T Consensus 96 ~~~~ti~~~-~~Gwglt--------~dg~~L~vS---dg----s~~l~~iDp~t~~~~~~-I~V~~~g~~~~~lNeL--- 155 (243)
T 3mbr_X 96 TPRARFRYP-GEGWALT--------SDDSHLYMS---DG----TAVIRKLDPDTLQQVGS-IKVTAGGRPLDNLNEL--- 155 (243)
T ss_dssp EEEEEEECS-SCCCEEE--------ECSSCEEEE---CS----SSEEEEECTTTCCEEEE-EECEETTEECCCEEEE---
T ss_pred cEEEEEeCC-CCceEEe--------eCCCEEEEE---CC----CCeEEEEeCCCCeEEEE-EEEccCCcccccceee---
Confidence 877666542 2344332 236788887 33 35799999999984422 222100001 111111
Q ss_pred eeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC-CCCCCCcCeEEEEE--CCEEEEecC
Q 012060 332 DVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS-SGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 332 ~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~-~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
...+++||+-.-.++.....|.++-+--.|..++.+.+..... .. ....--|||.. .++||+++.
T Consensus 156 --e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~-~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 --EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDS-TNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp --EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCT-TSSCEEEEEEETTTTEEEEEET
T ss_pred --EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCC-cCCceEEEEEcCCCCEEEEECC
Confidence 2338999976655666555566655522266666533321110 00 11134678876 579999987
No 80
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.16 Score=49.91 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=122.8
Q ss_pred cceeee-eCCeEEEEcCcCCCCceecceeeeecCCCC--ccccCCCCcCcccceeEEEEeC--CeEEE-EecCCCCCcee
Q 012060 171 ITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASA--HWTDPSDPRIYRATVTAIADSP--TTVFS-SLVCPHKENSV 244 (472)
Q Consensus 171 v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~--~W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~~~~~l~sV 244 (472)
+.++++ -++.+++.|+ .+| .+..||..+. ....+..+......+.+++... +.+++ |+.+ ..|
T Consensus 70 v~~~~~s~~~~~l~~~~--~dg-----~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v 138 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGAL--DNG-----SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN----GEI 138 (416)
T ss_dssp EEEEEECSSSSCEEEEE--SSS-----CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS----SCE
T ss_pred eEEEEECCCCCeEEEEc--cCC-----eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC----CeE
Confidence 334444 2566677776 444 3455665541 1111222222222333455552 44444 6544 468
Q ss_pred EEEeCCCcc------cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC
Q 012060 245 LLIDKSTLQ------ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 245 E~YDp~t~~------~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
-.||..+.+ ....+.... -+......+.+.+-++.++++|+.+ +.|..||.++++.+.+...+.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~- 208 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSM---SSVDEVISLAWNQSLAHVFASAGSS------NFASIWDLKAKKEVIHLSYTS- 208 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSC---CSSCCCCEEEECSSCTTEEEEESSS------SCEEEEETTTTEEEEEECCCC-
T ss_pred EEEECCCCcccccccccccccccc---CCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEEECCCCCcceEEeccc-
Confidence 889998844 111111100 0111123344544446777776643 469999999999777766541
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCC---CcccccccccCCCCcEEeecCCCCcc-cCCCCCCCcCeEEEEE--CC
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSG---DIAMADLRNLGEDPWVYMEDKNPSMI-SSSGNNNGENKLIHCY--KN 392 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g---~~~~~dl~s~e~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~--~g 392 (472)
........+.+++....+..++++|+.++ .+..-|+++-. ..+.. +. .... .-..++.. ++
T Consensus 209 -~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~~~~----~~~~~~~----~v~~~~~s~~~~ 275 (416)
T 2pm9_A 209 -PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----TPLQT----LNQGHQK----GILSLDWCHQDE 275 (416)
T ss_dssp -CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----SCSBC----CCSCCSS----CEEEEEECSSCS
T ss_pred -cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----CCcEE----eecCccC----ceeEEEeCCCCC
Confidence 10000122223334444557888998876 54433443311 01111 11 1110 11223332 56
Q ss_pred EEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc--eEEEeeeccceeEEeecCCC
Q 012060 393 QVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN--RLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 393 ~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~~~ 465 (472)
+++++++ +.|.+|+-... +. .+.+-+ ..+.|..+++--| +++++=.+...|-||+-...
T Consensus 276 ~~l~s~~~dg~v~~wd~~~~--------~~-~~~~~~-----~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWNPESA--------EQ-LSQFPA-----RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SCEEEEESSSEEEEECSSSC--------CE-EEEEEC-----SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CeEEEEeCCCCEEEeeCCCC--------cc-ceeecC-----CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 6666654 88999985311 11 111111 2456877777643 57888777888999986544
No 81
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.14 E-value=0.013 Score=58.07 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=106.1
Q ss_pred eeEEEEeCCe-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 221 VTAIADSPTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 221 ~~ava~l~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
+.+++...+. |.+|..+ .+|..||..+.+.+..+.... .-+.-+-..+.+. -++.++++|+.+ ++|
T Consensus 85 v~~~~~s~d~~l~~~s~d----g~v~lWd~~~~~~~~~~~~~~--~~H~~~V~~v~~s-pdg~~l~sgs~d------~~i 151 (344)
T 4gqb_B 85 VADLTWVGERGILVASDS----GAVELWELDENETLIVSKFCK--YEHDDIVSTVSVL-SSGTQAVSGSKD------ICI 151 (344)
T ss_dssp EEEEEEETTTEEEEEETT----SEEEEEEECTTSSCEEEEEEE--ECCSSCEEEEEEC-TTSSEEEEEETT------SCE
T ss_pred EEEEEEeCCCeEEEEECC----CEEEEEeccCCCceeEeeccc--cCCCCCEEEEEEC-CCCCEEEEEeCC------CeE
Confidence 3346665544 4446544 479999999854222111000 0000001122222 366677777744 469
Q ss_pred EEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCC
Q 012060 300 RMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGN 379 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~ 379 (472)
.+||.++++++-++... ...+..++....+..+++.|+.|+....=|+++-+ +-..+. ....+
T Consensus 152 ~iwd~~~~~~~~~~~~h--------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~-------~~~~~ 214 (344)
T 4gqb_B 152 KVWDLAQQVVLSSYRAH--------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIG-------CSAPG 214 (344)
T ss_dssp EEEETTTTEEEEEECCC--------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC-----------C
T ss_pred EEEECCCCcEEEEEcCc--------CCceEEEEecCCCCCceeeeccccccccccccccc--eeeeee-------cceee
Confidence 99999999977776654 12222233345566789999998875543444322 011111 11110
Q ss_pred CCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeec
Q 012060 380 NNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSRED 453 (472)
Q Consensus 380 ~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~ 453 (472)
. .-..++.. ++++++++ ++.|.+|+--.. +..+ .+-+ ..+.|+.++|- |.+++++=.+
T Consensus 215 ~--~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------~~~~-~~~~-----h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 215 Y--LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------SCVL-SSAV-----HSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp C--CEEEEEECSSCTTEEEEEETTSEEEEEESCC----------CCE-EEEC-----CSSCEEEEEECSSSSCCEEEEET
T ss_pred c--cceeeeecCCCCcceEEeccCCcEEEEECCCC--------cEEE-EEcC-----CCCCEEEEEEccCCCeEEEEEeC
Confidence 0 11122322 56777765 478999975311 1111 1222 24579999985 6688888888
Q ss_pred cceeEEeecCC
Q 012060 454 VEGIEVWESSN 464 (472)
Q Consensus 454 ~~~~~vw~~~~ 464 (472)
-..|-||+...
T Consensus 279 D~~i~vwd~~~ 289 (344)
T 4gqb_B 279 DCSLAVLDSSL 289 (344)
T ss_dssp TSCEEEECTTC
T ss_pred CCeEEEEECCC
Confidence 88899998653
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.036 Score=54.60 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=87.8
Q ss_pred cccceeeeeC--CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCc----ccceeEEEEeCC--eEEE-EecCCC
Q 012060 169 DNITSIRHVW--SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIY----RATVTAIADSPT--TVFS-SLVCPH 239 (472)
Q Consensus 169 ~~v~~v~~l~--~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~----R~~~~ava~l~g--~IYA-Gg~~~~ 239 (472)
..+.++++.. +.+++.|+ .+| .+..||..+.+-...-..... ...+.+++...+ .+++ ++.++
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~--~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~- 237 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAG--SSN-----FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD- 237 (416)
T ss_dssp CCCCEEEECSSCTTEEEEES--SSS-----CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS-
T ss_pred CCeeEEEeCCCCCcEEEEEc--CCC-----CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC-
Confidence 3344555443 46788887 454 355667665543222111110 222333555543 4666 65443
Q ss_pred CCceeEEEeCCCc-ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC
Q 012060 240 KENSVLLIDKSTL-QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 240 ~l~sVE~YDp~t~-~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
....|..||..+. +++..+.. -+......+.+.+.++.++++|+.+ +.|.+||.++++.+-+....
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~~-- 304 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQ-----GHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQFPAR-- 304 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCS-----CCSSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEEEECS--
T ss_pred CCceEEEEeCCCCCCCcEEeec-----CccCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccceeecCC--
Confidence 1237889999984 33333320 0111123344545467777777643 47999999999977776654
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
...+.+++....+..+++.|+.++....-|++.
T Consensus 305 ------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 305 ------GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ------SSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred ------CCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 122333444554447889999887655445543
No 83
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.12 E-value=0.026 Score=56.26 Aligned_cols=216 Identities=15% Similarity=0.105 Sum_probs=114.5
Q ss_pred eeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccc--ccccc
Q 012060 197 LSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKN--MAVGK 273 (472)
Q Consensus 197 sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~--v~~m~ 273 (472)
.+..+|+.+.++..+........-.+ ++.. ++.+|+++.. -.+|..||+.+.+.+..+... .+.. .....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~---~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~v~~ 174 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKS-VRFIDNTRLAIPLLE---DEGMDVLDINSGQTVRLSPPE---KYKKKLGFVET 174 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCC-CEESSSSEEEEEBTT---SSSEEEEETTTCCEEEECCCH---HHHTTCCEEEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceE-EEEeCCCeEEEEeCC---CCeEEEEECCCCeEeeecCcc---cccccCCceeE
Confidence 44566775554444333222221221 3433 6778884322 246899999985533211110 0000 00011
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
..+ .-++.+|++++. .+.|.+||+++++++++.... +..+..++....+..||+.+..++.+..-
T Consensus 175 ~~~-~~~~~~~~s~~~------d~~v~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 175 ISI-PEHNELWVSQMQ------ANAVHVFDLKTLAYKATVDLT--------GKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp EEE-GGGTEEEEEEGG------GTEEEEEETTTCCEEEEEECS--------SSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEE-cCCCEEEEEECC------CCEEEEEECCCceEEEEEcCC--------CCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 122 357888887763 357999999999988887644 12222334466677888888777765443
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec---------CCeEEEeeccccccccccCCccee
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR---------GGSLEVWSRVREGRNRSCSEGLFR 422 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~---------g~~~~v~~~~~~~~~~~~~~~~~r 422 (472)
|+++ . ..+.. +.... .-..++.. +..||+.. ++.|.+|+.... ++.+
T Consensus 240 d~~~---~--~~~~~----~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~--------~~~~ 297 (433)
T 3bws_A 240 DRKT---K--LEIRK----TDKIG-----LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE--------KLID 297 (433)
T ss_dssp ETTT---T--EEEEE----CCCCS-----EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT--------EEEE
T ss_pred ECCC---C--cEEEE----ecCCC-----CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC--------cEEe
Confidence 4432 2 22222 11111 11223322 33666665 468889986311 1111
Q ss_pred eccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecC
Q 012060 423 RNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 423 ~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
. .+. .+.+..+++. |++||++-.....|-||+..
T Consensus 298 ~--~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 298 T--IGP-----PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp E--EEE-----EECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred e--ccC-----CCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 1 111 1245666665 66899998888899999865
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.09 E-value=0.11 Score=49.66 Aligned_cols=288 Identities=15% Similarity=0.158 Sum_probs=134.5
Q ss_pred cceeeccCCcEEEeee------CceEEeeccc-CCCCCccccc-cccceeeeeC----CeEEEEcCcCCCCceecceeee
Q 012060 133 TFTASSDDGSLWIAHG------GQISVYDWNL-SHSVTVRTHL-DNITSIRHVW----SDVAAVGSDYSSGIHFYDLSSS 200 (472)
Q Consensus 133 a~r~~~~~g~l~va~G------G~Ve~YDW~~-~~m~~~R~~~-~~v~~v~~l~----~~lYavGG~~~~g~~~l~sve~ 200 (472)
++...|....++ +.| |.|..||... .........+ ..+.++++.. +.+++.|+ .+| .+..
T Consensus 23 ~~~~~p~~~~l~-~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg-----~i~i 94 (357)
T 3i2n_A 23 DCKWVPCSAKFV-TMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD--FGG-----NLHI 94 (357)
T ss_dssp EEEECTTSSEEE-EEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE--TTS-----CEEE
T ss_pred EEEEcCCCceEE-EecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec--CCC-----eEEE
Confidence 344445422344 555 3477777443 2111111112 2333444443 36677777 454 3555
Q ss_pred ecCCCCccccCCCCcCcccceeEEEEe-------CCeEEE-EecCCCCCceeEEEeCCCcc-cccccccccCCCcccccc
Q 012060 201 RHVASAHWTDPSDPRIYRATVTAIADS-------PTTVFS-SLVCPHKENSVLLIDKSTLQ-ISSEIGRQSGASSKNMAV 271 (472)
Q Consensus 201 ydp~t~~W~~~a~m~~~R~~~~ava~l-------~g~IYA-Gg~~~~~l~sVE~YDp~t~~-~~~~~~~~~~~~W~~v~~ 271 (472)
||..+.+ ..+..+......+.++... ++.+.+ |+.+ ..|-.||..+.+ ++..+....+..-..+
T Consensus 95 wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v-- 167 (357)
T 3i2n_A 95 WNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD----GTVKVWDPRQKDDPVANMEPVQGENKRDC-- 167 (357)
T ss_dssp ECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT----SCEEEECTTSCSSCSEEECCCTTSCCCCE--
T ss_pred EeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCC----CeEEEEeCCCCCCcceeccccCCCCCCce--
Confidence 6655443 1111122222222223222 344444 6544 368899998854 3333322111000011
Q ss_pred cceeE---EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec--CCeEEEEccc
Q 012060 272 GKLTW---IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD--ELTLFKICSK 346 (472)
Q Consensus 272 m~~~~---~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~--~~~iy~vGg~ 346 (472)
....+ ..-++.++++|+. .+.|..||.++++..+....+. .-.+ ++.... ++..+++|+.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~------~v~~---~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD------NGDIKLFDLRNMALRWETNIKN------GVCS---LEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET------TSEEEEEETTTTEEEEEEECSS------CEEE---EEESCSSSSCCEEEEEES
T ss_pred EEEEEEeccCCCCCEEEEEcc------CCeEEEEECccCceeeecCCCC------ceEE---EEcCCCCCCCCEEEEECC
Confidence 11111 1135666676663 3579999999999766544331 1112 111221 5677778888
Q ss_pred CCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCE-EEEecC--CeEEEeecccccccc-----c-
Q 012060 347 SGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQ-VFVGRG--GSLEVWSRVREGRNR-----S- 415 (472)
Q Consensus 347 ~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~-l~~~~g--~~~~v~~~~~~~~~~-----~- 415 (472)
++....-|+++-+ ........ +..... .-..++.. +++ ++++++ +.|.+|+-....... +
T Consensus 233 dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~ 303 (357)
T 3i2n_A 233 EGKFHVFDMRTQHPTKGFASVS-----EKAHKS----TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303 (357)
T ss_dssp TTEEEEEEEEEEETTTEEEEEE-----EECCSS----CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSC
T ss_pred CCeEEEEeCcCCCcccceeeec-----cCCCcC----CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCC
Confidence 8766544555433 21111111 001111 11223333 344 566544 889999864320000 0
Q ss_pred ---cCC--cceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCCC
Q 012060 416 ---CSE--GLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 416 ---~~~--~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~ 465 (472)
... .. -..+- ...+.|+.+++- |..|+++=.+...|.||+...+
T Consensus 304 ~~~~~~~~~~-~~~~~-----~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 304 EMGVAGSVSL-LQNVT-----LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCCEEEE-EEEEE-----CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccccccce-eeccc-----cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 000 01 11111 134579988886 5567767888889999997654
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.09 E-value=0.075 Score=50.54 Aligned_cols=149 Identities=12% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
.+.++++|+.+ +.|..||.++++++-+.... ...+..++... ++.+++.|+.++....-|+++
T Consensus 184 ~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h--------~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~-- 246 (340)
T 4aow_A 184 SNPIIVSCGWD------KLVKVWNLANCKLKTNHIGH--------TGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-- 246 (340)
T ss_dssp SSCEEEEEETT------SCEEEEETTTTEEEEEECCC--------SSCEEEEEECT-TSSEEEEEETTCEEEEEETTT--
T ss_pred CCcEEEEEcCC------CEEEEEECCCCceeeEecCC--------CCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc--
Confidence 45566676633 46999999999966666544 11221222233 677888999887654334432
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEE-EecCCeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVF-VGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~-~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+..+.. +.... .-..++.. +++++ ++.++.|.+|+-........+ +............+.|
T Consensus 247 ---~~~~~~----~~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~h~~~v 309 (340)
T 4aow_A 247 ---GKHLYT----LDGGD-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL-----KQEVISTSSKAEPPQC 309 (340)
T ss_dssp ---TEEEEE----EECSS-----CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE-----CCC-------CCCCCE
T ss_pred ---Cceeee----ecCCc-----eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEec-----cccceeeeccCCCCCE
Confidence 333332 11111 01112222 23333 335688999975321000001 1111111111245679
Q ss_pred EEEeec--CceEEEeeeccceeEEeecC
Q 012060 438 SRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 438 ~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
+.+++- |..|+..=. -..|-||+..
T Consensus 310 ~~l~~s~dg~~l~sgs~-Dg~v~iW~~~ 336 (340)
T 4aow_A 310 TSLAWSADGQTLFAGYT-DNLVRVWQVT 336 (340)
T ss_dssp EEEEECTTSSEEEEEET-TSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeC-CCEEEEEeCC
Confidence 988875 555555444 4679999854
No 86
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.08 E-value=0.21 Score=47.33 Aligned_cols=273 Identities=12% Similarity=0.122 Sum_probs=129.3
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +..+++.+ |.|..||... ........+-..+.++++. ++.+.+.|+ .+| .+..||..+.+-
T Consensus 28 ~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~-----~i~vwd~~~~~~ 99 (312)
T 4ery_A 28 SVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS--DDK-----TLKIWDVSSGKC 99 (312)
T ss_dssp EEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTCCE
T ss_pred EEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC--CCC-----EEEEEECCCCcE
Confidence 3444444 44443433 4577777322 1111111122223344433 566777777 444 456677665432
Q ss_pred ccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGS 286 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~ 286 (472)
. ..+......+.+++.. ++.+++ |+.+ ..|-.||..+.+++..+.... .+...+.+. -++.++++
T Consensus 100 ~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~-~~~~~l~~ 166 (312)
T 4ery_A 100 L--KTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVKTGKCLKTLPAHS------DPVSAVHFN-RDGSLIVS 166 (312)
T ss_dssp E--EEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEETTTCCEEEEECCCS------SCEEEEEEC-TTSSEEEE
T ss_pred E--EEEcCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCEEEEEecCCC------CcEEEEEEc-CCCCEEEE
Confidence 1 1122222223224433 334444 6554 368899999865443332210 011122232 35666777
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEe
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYM 366 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~ 366 (472)
|+.+ +.|..||.++++.+-+..... . ..+..++.. -++..+++|+.++....-|+++ ...+
T Consensus 167 ~~~d------~~i~~wd~~~~~~~~~~~~~~--~-----~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~-----~~~~ 227 (312)
T 4ery_A 167 SSYD------GLCRIWDTASGQCLKTLIDDD--N-----PPVSFVKFS-PNGKYILAATLDNTLKLWDYSK-----GKCL 227 (312)
T ss_dssp EETT------SCEEEEETTTCCEEEEECCSS--C-----CCEEEEEEC-TTSSEEEEEETTTEEEEEETTT-----TEEE
T ss_pred EeCC------CcEEEEECCCCceeeEEeccC--C-----CceEEEEEC-CCCCEEEEEcCCCeEEEEECCC-----CcEE
Confidence 7643 469999999998665554331 1 111111122 3566777888887654334432 1222
Q ss_pred ecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--
Q 012060 367 EDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA-- 442 (472)
Q Consensus 367 ~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~-- 442 (472)
.. +................-+++++++++ +.|.+|+-.. ..+.+. +-++ .+.|..+++
T Consensus 228 ~~----~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--------~~~~~~-~~~h-----~~~v~~~~~~p 289 (312)
T 4ery_A 228 KT----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--------KEIVQK-LQGH-----TDVVISTACHP 289 (312)
T ss_dssp EE----ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--------CCEEEE-ECCC-----SSCEEEEEECS
T ss_pred EE----EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--------chhhhh-hhcc-----CCcEEEEeecC
Confidence 21 111110000011112223566666655 7899998531 112121 2222 346877777
Q ss_pred cCceEEEee-eccceeEEeecC
Q 012060 443 GGNRLFVSR-EDVEGIEVWESS 463 (472)
Q Consensus 443 gg~r~f~~~-~~~~~~~vw~~~ 463 (472)
-|..|+.+= ++-..|-||++.
T Consensus 290 ~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 290 TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSEEEEEECTTTCCEEEEECC
T ss_pred cCCceEEEEccCCccEEEecCC
Confidence 455555443 355679999863
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.05 E-value=0.032 Score=55.69 Aligned_cols=225 Identities=14% Similarity=0.162 Sum_probs=112.0
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCc
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIY 217 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~ 217 (472)
+.++++++ |.|..||... ........+-+.+.+++. ++.+++.|+ .+| .+..||..... ..+..+...
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~--~dg-----~i~i~d~~~~~-~~~~~~~~~ 216 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGS--RSG-----AIHHHDVRIAN-HQIGTLQGH 216 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-ETTEEEEEE--TTS-----EEEEEETTSSS-CEEEEEECC
T ss_pred CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-CCCEEEEEc--CCC-----CEEEEecccCc-ceeeEEcCC
Confidence 44443333 4588887332 222222222233334444 777788887 454 45566655322 111112222
Q ss_pred ccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccc
Q 012060 218 RATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGY 295 (472)
Q Consensus 218 R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~ 295 (472)
...+.+++.. ++.+++ |+.+ ..|-.||..+.+++..+.. ...+...+.+.+.+..++++|+ |. .
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~p~~~~ll~~~~--gs--~ 282 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGND----NVVQIWDARSSIPKFTKTN------HNAAVKAVAWCPWQSNLLATGG--GT--M 282 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETT----SCEEEEETTCSSEEEEECC------CSSCCCEEEECTTSTTEEEEEC--CT--T
T ss_pred CCCeeEEEEcCCCCEEEEEeCC----CeEEEccCCCCCccEEecC------CcceEEEEEECCCCCCEEEEec--CC--C
Confidence 2233334444 445555 6554 4788999998654443322 1112244556666667777664 22 2
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCCCcccccccccCCCCcEEeecCCCCcc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSGDIAMADLRNLGEDPWVYMEDKNPSMI 374 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g~~~~~dl~s~e~d~W~~~~~~~~~m~ 374 (472)
.+.|..||.++++++.+.... ..+..++....+..|++.+| .++....-|++ +.+...... +.
T Consensus 283 d~~i~i~d~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~---~~~~~~~~~----~~ 346 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVDAG---------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS---SSGLTKQVD----IP 346 (401)
T ss_dssp TCEEEEEETTTCCEEEEEECS---------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEE---TTEEEEEEE----EE
T ss_pred CCEEEEEECCCCCEEEEEeCC---------CcEEEEEECCCCCeEEEEeecCCCcEEEEecC---CccceeEEE----ec
Confidence 468999999999977776533 12223334554555555544 66654432333 333444332 11
Q ss_pred cCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeecc
Q 012060 375 SSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~ 408 (472)
.... .-..++.. +++.++++ +|.|.+|+-.
T Consensus 347 ~h~~----~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 347 AHDT----RVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp CCSS----CCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CCCC----CEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 1111 11222322 45544444 3889999864
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.079 Score=50.69 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=94.0
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +.++++.+ |.|..||... ........+-+.+.++++. ++..++.|+ .+| .+..||..+.+-
T Consensus 37 ~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg-----~i~iwd~~~~~~ 108 (369)
T 3zwl_B 37 QVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS--ADY-----SIKLWDVSNGQC 108 (369)
T ss_dssp EEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTT-----EEEEEETTTCCE
T ss_pred EEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCcE
Confidence 3444444 44443333 4588887433 2222222222334444443 466677777 454 455666655543
Q ss_pred ccCCCCcCcccceeEEEEeC-Ce-EEEEecCC-CCCceeEEEeCCCcccccccccccCCCcccc-------cccceeEEe
Q 012060 209 TDPSDPRIYRATVTAIADSP-TT-VFSSLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNM-------AVGKLTWIP 278 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-------~~m~~~~~~ 278 (472)
...-... ..+.+++... +. |+++..+. .....+..||..+.+...++.......-..+ ......+.+
T Consensus 109 ~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 109 VATWKSP---VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp EEEEECS---SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred EEEeecC---CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 3222211 1122244443 33 44454431 2346889999888543322222110000000 111222333
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++.++++|+. .+.|..||.++ .+.+...... ...+..++... ++.++++|+.++....-|+++
T Consensus 186 -~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 186 -KGKYIIAGHK------DGKISKYDVSNNYEYVDSIDLH--------EKSISDMQFSP-DLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp -GGCEEEEEET------TSEEEEEETTTTTEEEEEEECC--------SSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred -CCCEEEEEcC------CCEEEEEECCCCcEeEEEEecC--------CCceeEEEECC-CCCEEEEecCCceEEEEECCC
Confidence 4445555553 35799999999 6766666544 11222222233 667777888887655445443
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.99 E-value=0.13 Score=50.35 Aligned_cols=156 Identities=10% Similarity=0.096 Sum_probs=80.2
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC---CCccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS---GDIAMADLR 356 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~---g~~~~~dl~ 356 (472)
++ ++++|+. .+.|..||.++++++.+....- ........+..++... ++.++++|+.+ +.+..-|++
T Consensus 197 ~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~--~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFN------NGTVQISELSTLRPLYNFESQH--SMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECT------TSEEEEEETTTTEEEEEEECCC-----CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETT
T ss_pred Cc-eEEEEeC------CCcEEEEECCCCceeEEEeccc--cccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 45 6666652 4579999999999888877510 0000001111122233 56777888877 554433443
Q ss_pred ccCCCCcEEeecCCCC-------ccc--CCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeeccccccccccCCcceeec
Q 012060 357 NLGEDPWVYMEDKNPS-------MIS--SSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRN 424 (472)
Q Consensus 357 s~e~d~W~~~~~~~~~-------m~~--~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~ 424 (472)
+- ..+.....+ +.. ... .-..++.. ++++++++ ++.|.+|+-... .. .+.
T Consensus 267 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~-~~~ 328 (397)
T 1sq9_A 267 FG-----ERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--------ER-ITT 328 (397)
T ss_dssp TC-----CEEEEECBC--------CCBSBSS----CEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EE-EEE
T ss_pred CC-----cccceeccCcccccccccccccCC----cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--------ce-eEE
Confidence 32 222220000 000 111 11223322 35555554 478999986422 01 111
Q ss_pred cc------cccc----------cCCCCceEEEeecCc-----------eEEEeeeccceeEEeecC
Q 012060 425 FV------DRVE----------DSGRGAISRIDAGGN-----------RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 425 ~~------~~~~----------~~~~~~i~~~~~gg~-----------r~f~~~~~~~~~~vw~~~ 463 (472)
+- ++.+ +...+.|..+++--| +++++=.+...|-||+..
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 11 1111 112567999999877 688888888899999853
No 90
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.98 E-value=0.13 Score=49.95 Aligned_cols=186 Identities=15% Similarity=0.225 Sum_probs=98.9
Q ss_pred EEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++.. ++...| |+.+ ..|..||..+.++...+... -..+ ..+.+. -++.++++|+.+ +.|..
T Consensus 128 ~~~spdg~~l~~g~~d----g~v~i~~~~~~~~~~~~~~~----~~~v--~~~~~s-pdg~~lasg~~d------g~i~i 190 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHV----GKVNIFGVESGKKEYSLDTR----GKFI--LSIAYS-PDGKYLASGAID------GIINI 190 (321)
T ss_dssp EEECTTSSEEEEECTT----SEEEEEETTTCSEEEEEECS----SSCE--EEEEEC-TTSSEEEEEETT------SCEEE
T ss_pred EEECCCCCEEEEEcCC----CcEEEEEcCCCceeEEecCC----CceE--EEEEEC-CCCCEEEEEcCC------CeEEE
Confidence 4433 344455 6443 47889999885432222110 0001 122233 366677777744 46999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNN 381 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~ 381 (472)
||.++++++-+.... ...+.+++... ++.+++.|+.++....-|++.- ..+.. +....
T Consensus 191 wd~~~~~~~~~~~~h--------~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-----~~~~~----~~~h~---- 248 (321)
T 3ow8_A 191 FDIATGKLLHTLEGH--------AMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-----NLAGT----LSGHA---- 248 (321)
T ss_dssp EETTTTEEEEEECCC--------SSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-----CEEEE----ECCCS----
T ss_pred EECCCCcEEEEEccc--------CCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-----ceeEE----EcCCC----
Confidence 999999977666544 11222222333 6777888998876544344321 12221 11111
Q ss_pred CcCe-EEEEE-CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccce
Q 012060 382 GENK-LIHCY-KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEG 456 (472)
Q Consensus 382 ~~~~-~~~~~-~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~ 456 (472)
..+ .++.. +++.+++++ +.|.+|+-... +. .+.+.++ .+.|..+++-.| +++++=.+...
T Consensus 249 -~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--------~~-~~~~~~h-----~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 249 -SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--------TC-VHTFFDH-----QDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EE-EEEECCC-----SSCEEEEEECTTSSEEEEEETTCC
T ss_pred -CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------EE-EEEEcCC-----CCcEEEEEECCCCCEEEEEeCCCe
Confidence 111 22222 455555543 78999975311 11 2223332 457988888543 45566667778
Q ss_pred eEEeecC
Q 012060 457 IEVWESS 463 (472)
Q Consensus 457 ~~vw~~~ 463 (472)
|-||+.|
T Consensus 314 i~vwd~p 320 (321)
T 3ow8_A 314 IHIYDCP 320 (321)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999965
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.97 E-value=0.12 Score=50.36 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=117.5
Q ss_pred cccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe----CCeEEE-EecCCCCC
Q 012060 169 DNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS----PTTVFS-SLVCPHKE 241 (472)
Q Consensus 169 ~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l----~g~IYA-Gg~~~~~l 241 (472)
..+.++++. ++.+++.|+ .+| .+..||..+.+-...-.....-. +++.. ++.+++ |+.+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~--~d~-----~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 165 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSS--FDK-----TLKVWDTNTLQTADVFNFEETVY---SHHMSPVSTKHCLVAVGTRG---- 165 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEE--TTS-----EEEEEETTTTEEEEEEECSSCEE---EEEECSSCSSCCEEEEEESS----
T ss_pred CcEEEEEEccCCCcEEEEEe--CCC-----eEEEeeCCCCccceeccCCCcee---eeEeecCCCCCcEEEEEcCC----
Confidence 334445544 445677776 444 45667766654333222222111 23332 223444 6544
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC--
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG-- 319 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~-- 319 (472)
..|..||..+.+++..+... ......+.+.+-+..++++|+.+ +.|..||.+++............
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGH------RQEILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SSEEEEESSSSCCCEEECCC------CSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CeEEEEeCCCcceeeeecCC------CCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCccccccccccccc
Confidence 46889999885543333210 01112344445555577777744 46999999887522222211000
Q ss_pred ----CC--CcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE--EEC
Q 012060 320 ----RS--ARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH--CYK 391 (472)
Q Consensus 320 ----~~--~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~ 391 (472)
.. .-....+..++... ++..+++|+.++....-|+++-+. ........... .... ....+. .-.
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~--~~~~----~~~~~~~~~~~ 305 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN--SKKG----LKFTVSCGCSS 305 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--CSSC----CCCEECCSSSS
T ss_pred ceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--cccc----ceeEEecCCCc
Confidence 00 00111122222233 566777888887655445543320 00000000000 0000 011111 123
Q ss_pred CEEEEecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeecCCC
Q 012060 392 NQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 392 g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~~ 465 (472)
..+++..++.|.+|+-... .. .+.+-+ ..+.|+.+++--| +++++=.+...|-||+....
T Consensus 306 ~~~~~~~~~~i~v~d~~~~--------~~-~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSG--------EQ-ITMLKG-----HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CEEEEEETTEEEEEETTTC--------CE-EEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred eEEEEecCCEEEEEECcCC--------cc-eeeecc-----CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 4555667789999986422 11 111222 3457888888643 45556566678999987653
No 92
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.93 E-value=0.12 Score=49.66 Aligned_cols=289 Identities=10% Similarity=0.087 Sum_probs=132.6
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-C--CCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-S--HSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~--~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++...|. +.++++.+ |.|..||... . .......+-+.+.++++. ++.+++.|+ .+| .+..||..+.
T Consensus 13 ~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~dg-----~i~vwd~~~~ 84 (372)
T 1k8k_C 13 CHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--TDR-----NAYVWTLKGR 84 (372)
T ss_dssp EEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--TTS-----CEEEEEEETT
T ss_pred EEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc--CCC-----eEEEEECCCC
Confidence 3444444 44443332 3477777332 1 122222222334445544 566777777 454 3556666666
Q ss_pred ccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEE
Q 012060 207 HWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Ly 284 (472)
++.....+......+.+++.. ++.+++ |+.+ ..|-.||..+.++...+...... .......+.+.+ ++.++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l 157 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKHIKKP--IRSTVLSLDWHP-NSVLL 157 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEEEEEEECTT--CCSCEEEEEECT-TSSEE
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CEEEEEEecCCCcceeeeeeecc--cCCCeeEEEEcC-CCCEE
Confidence 654433222222333335544 344444 6544 46778888874310000000000 001112233333 56666
Q ss_pred EEEEeCCCccccceEEEEcCC------------------CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc
Q 012060 285 GSAIAWGAFGYSGYVRMWDPR------------------SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK 346 (472)
Q Consensus 285 v~Gg~~g~~~~~~sve~yDp~------------------~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~ 346 (472)
++|+.+ +.|..||.+ +++++-+.... ...+..++... ++.++++|+.
T Consensus 158 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~ 222 (372)
T 1k8k_C 158 AAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--------CGWVHGVCFSA-NGSRVAWVSH 222 (372)
T ss_dssp EEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--------SSCEEEEEECS-SSSEEEEEET
T ss_pred EEEcCC------CCEEEEEcccccccccccccccccccchhhheEecCCC--------CCeEEEEEECC-CCCEEEEEeC
Confidence 766643 468999954 44433333222 11111222233 5667778888
Q ss_pred CCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEEe-cCCeEEEeeccc----cccccccC---
Q 012060 347 SGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFVG-RGGSLEVWSRVR----EGRNRSCS--- 417 (472)
Q Consensus 347 ~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~~-~g~~~~v~~~~~----~~~~~~~~--- 417 (472)
++....-|+++-+ .+.. +..... .-..++ .-+++++++ .++.|.+|+-.. +.....+.
T Consensus 223 d~~i~i~d~~~~~-----~~~~----~~~~~~----~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 289 (372)
T 1k8k_C 223 DSTVCLADADKKM-----AVAT----LASETL----PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 289 (372)
T ss_dssp TTEEEEEEGGGTT-----EEEE----EECSSC----CEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred CCEEEEEECCCCc-----eeEE----EccCCC----CeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccc
Confidence 8765544444322 2221 111111 112233 235665555 458899998754 10000000
Q ss_pred ---------Ccce-----eeccc------cccccCCCCceEEEe-ecCc----eEEEeeeccceeEEeecCC
Q 012060 418 ---------EGLF-----RRNFV------DRVEDSGRGAISRID-AGGN----RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 418 ---------~~~~-----r~~~~------~~~~~~~~~~i~~~~-~gg~----r~f~~~~~~~~~~vw~~~~ 464 (472)
-+.| +.... ........+.|+.++ +--| ++++|=.+-..|-||+...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0000 00000 111113455799997 4344 7888888888999998643
No 93
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.91 E-value=0.01 Score=57.88 Aligned_cols=194 Identities=10% Similarity=-0.015 Sum_probs=110.3
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+-++.||+..| ..|. +..+|+.+.+-..-- +...-.+. +++..++.||+.-+ ..+.+-+||+.|.
T Consensus 59 GL~~~~~~Ly~stG--~~g~-----v~~iD~~Tgkv~~~~-l~~~~Fge-Git~~g~~Ly~ltw---~~~~v~V~D~~Tl 126 (268)
T 3nok_A 59 GLVFHQGHFFESTG--HQGT-----LRQLSLESAQPVWME-RLGNIFAE-GLASDGERLYQLTW---TEGLLFTWSGMPP 126 (268)
T ss_dssp EEEEETTEEEEEET--TTTE-----EEECCSSCSSCSEEE-ECTTCCEE-EEEECSSCEEEEES---SSCEEEEEETTTT
T ss_pred eEEEECCEEEEEcC--CCCE-----EEEEECCCCcEEeEE-CCCCccee-EEEEeCCEEEEEEc---cCCEEEEEECCcC
Confidence 44557899999999 4553 778898887754432 32211223 38888999999422 2568999999998
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
+++.+|.- .+..|-.. .-++.||++- | .+.|..+||.+.+++=+..-. ...+.-.-+-.+
T Consensus 127 ~~~~ti~~-~~eGwGLt--------~Dg~~L~vSd---G----s~~l~~iDp~T~~v~~~I~V~---~~g~~v~~lNeL- 186 (268)
T 3nok_A 127 QRERTTRY-SGEGWGLC--------YWNGKLVRSD---G----GTMLTFHEPDGFALVGAVQVK---LRGQPVELINEL- 186 (268)
T ss_dssp EEEEEEEC-SSCCCCEE--------EETTEEEEEC---S----SSEEEEECTTTCCEEEEEECE---ETTEECCCEEEE-
T ss_pred cEEEEEeC-CCceeEEe--------cCCCEEEEEC---C----CCEEEEEcCCCCeEEEEEEeC---CCCccccccccc-
Confidence 87777764 12344433 2367888873 3 358999999999854332221 111111100011
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
...+++||+-.-.++.....|.++-+--.|..++.+.+.....+......--|||.- +++||+++.
T Consensus 187 -e~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 187 -ECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -EEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -EEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 223789996554455555445554442225555542111000011111134677776 579999886
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.13 Score=49.46 Aligned_cols=236 Identities=12% Similarity=0.117 Sum_probs=115.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-C--CeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P--TTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~--g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++..++.|+ .+| ++..||....++..+..+......+.+++.. + +.+++ |+.+ ..|-.||..+.+
T Consensus 22 ~~~~l~~~~--~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~ 90 (379)
T 3jrp_A 22 YGKRLATCS--SDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVLIWKEENGR 90 (379)
T ss_dssp SSSEEEEEE--TTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----SCEEEEEEETTE
T ss_pred CCCEEEEEE--CCC-----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC----CEEEEEEcCCCc
Confidence 466777777 455 3445555544444444343333344345554 2 44444 6554 368899988843
Q ss_pred --cccccccccCCCcccccccceeEEecC-CeEEEEEEeCCCccccceEEEEcCCCCee--eeEEcCCCCCCCCcccccc
Q 012060 254 --ISSEIGRQSGASSKNMAVGKLTWIPAT-GVVLGSAIAWGAFGYSGYVRMWDPRSGEV--VWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 254 --~~~~~~~~~~~~W~~v~~m~~~~~~~~-g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~--vW~~~~~~~~~~~R~~~~~ 328 (472)
++..+.. +......+.+.+.. +.++++|+. .+.|..||.+++.. ....... ...+
T Consensus 91 ~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~--------~~~v 150 (379)
T 3jrp_A 91 WSQIAVHAV------HSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAH--------AIGV 150 (379)
T ss_dssp EEEEEEECC------CSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCTTSCCCEEEEECC--------TTCE
T ss_pred eeEeeeecC------CCcceEEEEeCCCCCCCEEEEecC------CCcEEEEecCCCCceeeEEecCC--------CCce
Confidence 1111110 00111223344431 556666653 34799999998841 1122111 1111
Q ss_pred cceeeeec------------CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-C---C
Q 012060 329 ADVDVDVD------------ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-K---N 392 (472)
Q Consensus 329 ~d~~v~~~------------~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~---g 392 (472)
..++.... ++.++++|+.++....-|++.- ...|..+.. +..... .-..++.. + +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~h~~----~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLEST----LEGHSD----WVRDVAWSPTVLLR 221 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT-TTEEEEEEE----ECCCSS----CEEEEEECCCCSSS
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC-CcceeeEEE----EecccC----cEeEEEECCCCCCC
Confidence 11111221 5788889998887654455432 333555543 222221 11223322 2 5
Q ss_pred EEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 393 QVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 393 ~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+++++++ +.|.+|+-... ... ..+..... ....+.|+.+++ -|..|++.-. ...|-||+..
T Consensus 222 ~~l~s~~~dg~i~iwd~~~~------~~~-~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 222 SYLASVSQDRTCIIWTQDNE------QGP-WKKTLLKE--EKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp EEEEEEETTSCEEEEEESST------TSC-CEEEESSS--SCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred CeEEEEeCCCEEEEEeCCCC------Ccc-ceeeeecc--ccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence 6666544 88999986422 101 11111111 123456887777 5556665555 4669999865
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.89 E-value=0.25 Score=48.94 Aligned_cols=205 Identities=15% Similarity=0.155 Sum_probs=105.4
Q ss_pred cceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCC-CcccccccceeEEecCCeEEEEEEeCCCcc
Q 012060 219 ATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGA-SSKNMAVGKLTWIPATGVVLGSAIAWGAFG 294 (472)
Q Consensus 219 ~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~-~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~ 294 (472)
..+.+++.. ++.++| |+.+ .+|-.||..+.+...++.++... .-+.-....+.|.+....++++|+.+
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~d----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d---- 153 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSED----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD---- 153 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETT----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT----
T ss_pred CCEEEEEeCCCCCCEEEEEeCC----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC----
Confidence 344345554 455666 6544 47899999885311111110000 00000112233444443566776643
Q ss_pred ccceEEEEcCCCCeeeeEEc--CCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC
Q 012060 295 YSGYVRMWDPRSGEVVWETN--EPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS 372 (472)
Q Consensus 295 ~~~sve~yDp~~~~~vW~~~--~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~ 372 (472)
+.|..||.++++++.+.. .. ...+.+++... ++.++++|+.++.+..-|+++ ...+..
T Consensus 154 --g~i~iwd~~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-----~~~~~~---- 213 (402)
T 2aq5_A 154 --NVILVWDVGTGAAVLTLGPDVH--------PDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK-----GTVVAE---- 213 (402)
T ss_dssp --SCEEEEETTTTEEEEEECTTTC--------CSCEEEEEECT-TSSCEEEEETTSEEEEEETTT-----TEEEEE----
T ss_pred --CEEEEEECCCCCccEEEecCCC--------CCceEEEEECC-CCCEEEEEecCCcEEEEeCCC-----Cceeee----
Confidence 469999999999777663 22 12222222333 667777888887655444443 223322
Q ss_pred c-ccCCCCCCCcCeEEEEECCEEEEec-----CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cC
Q 012060 373 M-ISSSGNNNGENKLIHCYKNQVFVGR-----GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GG 444 (472)
Q Consensus 373 m-~~~~~~~~~~~~~~~~~~g~l~~~~-----g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg 444 (472)
+ .... + .........-++++++++ ++.|.+|+-... .+.+... -++ ..+.|..+.+ .|
T Consensus 214 ~~~~~~-~-~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~------~~~~~~~-~~~-----~~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 214 KDRPHE-G-TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL------EEPLSLQ-ELD-----TSSGVLLPFFDPDT 279 (402)
T ss_dssp EECSSC-S-SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC------SSCSEEE-ECC-----CCSSCEEEEEETTT
T ss_pred eccCCC-C-CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc------cCCceEE-ecc-----CCCceeEEEEcCCC
Confidence 1 0111 0 001222223467777765 589999987532 1111011 011 2234666655 57
Q ss_pred ceEEEeeeccceeEEeecCCC
Q 012060 445 NRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 445 ~r~f~~~~~~~~~~vw~~~~~ 465 (472)
..||++=.+...|-||+....
T Consensus 280 ~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 280 NIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp TEEEEEETTCSCEEEEEECSS
T ss_pred CEEEEEEcCCCeEEEEEecCC
Confidence 789888877778999986643
No 96
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=96.88 E-value=0.00056 Score=56.73 Aligned_cols=82 Identities=21% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC-CCCCCCEEE-cCChhhHHHHhhccccCc---------ccCCC
Q 012060 15 GDRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ-SDEPNPIFI-DRDPDVFSVLLSLLRSNR---------LPSTA 82 (472)
Q Consensus 15 ~~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~-~~~~~~vfi-Drdp~~F~~IL~flrtg~---------l~~~~ 82 (472)
++.|+|.- +|+.|.+++.+ |.. |.+++.|+... +..+++|-+ ++++.+++.|++|++.-+ -.+++
T Consensus 3 ~~~v~L~SsDg~~f~V~~~v-A~~--S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~ 79 (99)
T 1hv2_A 3 QDFVTLVSKDDKEYEISRSA-AMI--SPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE 79 (99)
T ss_dssp CSEEEEEETTTEEEEEEHHH-HTT--CHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCC
T ss_pred CcEEEEEecCCCEEEECHHH-HHH--hHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCC
Confidence 45788887 99999999997 444 78999999753 334466745 899999999999997643 11111
Q ss_pred ---CCcchHHHHhhhhhcCc
Q 012060 83 ---SRFSKQELADEALYYGI 99 (472)
Q Consensus 83 ---~~~~v~~Ll~eA~~~ql 99 (472)
+...+.+|+-+|+||+|
T Consensus 80 w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 80 FEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHhCc
Confidence 22456788889999876
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.025 Score=54.65 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=98.9
Q ss_pred eeccCCcEEEeee--CceEEeecc--c-CCCCCccccccccceeeee-C--CeEEEEcCcCCCCceecceeeeecCCCCc
Q 012060 136 ASSDDGSLWIAHG--GQISVYDWN--L-SHSVTVRTHLDNITSIRHV-W--SDVAAVGSDYSSGIHFYDLSSSRHVASAH 207 (472)
Q Consensus 136 ~~~~~g~l~va~G--G~Ve~YDW~--~-~~m~~~R~~~~~v~~v~~l-~--~~lYavGG~~~~g~~~l~sve~ydp~t~~ 207 (472)
..|. +.++++.+ |.|..||.. . ......+.+-+.+.++++. + +.+++.|+ .+| .+..||..+.+
T Consensus 19 ~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg-----~v~iwd~~~~~ 90 (379)
T 3jrp_A 19 LDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVLIWKEENGR 90 (379)
T ss_dssp ECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTS-----CEEEEEEETTE
T ss_pred EcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec--cCC-----EEEEEEcCCCc
Confidence 3344 44443333 457777733 1 1111222233444455553 2 56777777 455 45667777777
Q ss_pred cccCCCCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec----
Q 012060 208 WTDPSDPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA---- 279 (472)
Q Consensus 208 W~~~a~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~---- 279 (472)
|..+..+......+.+++... +.+++ |+.+ ..|-.||..+.+....+-.. -.......+.+.+.
T Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD----GKVSVVEFKENGTTSPIIID----AHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----SEEEEEECCTTSCCCEEEEE----CCTTCEEEEEECCCC---
T ss_pred eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC----CcEEEEecCCCCceeeEEec----CCCCceEEEEEcCccccc
Confidence 665554443334444455553 34444 6544 47889999884311111000 00001122334333
Q ss_pred --------CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC--CeEEEEcccCCC
Q 012060 280 --------TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE--LTLFKICSKSGD 349 (472)
Q Consensus 280 --------~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~ 349 (472)
++.++++|+.+| .|..||.++++..|.......... ..+.+++....+ +.+++.|+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~----~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp -------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEeccc----CcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 577777777444 699999988865565544311111 112222233322 788889998887
Q ss_pred ccccccc
Q 012060 350 IAMADLR 356 (472)
Q Consensus 350 ~~~~dl~ 356 (472)
...-|++
T Consensus 233 i~iwd~~ 239 (379)
T 3jrp_A 233 CIIWTQD 239 (379)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 5543444
No 98
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.79 E-value=0.032 Score=54.14 Aligned_cols=196 Identities=10% Similarity=-0.028 Sum_probs=112.5
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+-++.||+..| ..|. +++..+|+.+.+-..--++...-.+. +++..++.||+.-+ ..+.+-+||+.|.
T Consensus 47 GL~~~~~~LyestG--~~g~---S~v~~vD~~Tgkv~~~~~l~~~~Fge-Git~~g~~ly~ltw---~~~~v~v~D~~t~ 117 (262)
T 3nol_A 47 GFFYRNGYFYESTG--LNGR---SSIRKVDIESGKTLQQIELGKRYFGE-GISDWKDKIVGLTW---KNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEETTEEEEEEE--ETTE---EEEEEECTTTCCEEEEEECCTTCCEE-EEEEETTEEEEEES---SSSEEEEEETTTC
T ss_pred eEEEECCEEEEECC--CCCC---ceEEEEECCCCcEEEEEecCCcccee-EEEEeCCEEEEEEe---eCCEEEEEECccC
Confidence 44556899999988 3442 46778899888755543443222233 38889999999422 2568999999998
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
+++.+|.-. +..|-... -++.||++ +| .+.|..+||.+.+++=+..-. ...|.-..+-.+
T Consensus 118 ~~~~ti~~~-~eG~glt~--------dg~~L~~S---dG----s~~i~~iDp~T~~v~~~I~V~---~~g~~~~~lNEL- 177 (262)
T 3nol_A 118 RQVRSFNYD-GEGWGLTH--------NDQYLIMS---DG----TPVLRFLDPESLTPVRTITVT---AHGEELPELNEL- 177 (262)
T ss_dssp CEEEEEECS-SCCCCEEE--------CSSCEEEC---CS----SSEEEEECTTTCSEEEEEECE---ETTEECCCEEEE-
T ss_pred cEEEEEECC-CCceEEec--------CCCEEEEE---CC----CCeEEEEcCCCCeEEEEEEec---cCCcccccccee-
Confidence 877766552 24444432 25678886 23 257999999999854332221 011111100011
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
...+++||+-.-.++.....|.++-+--.|..++.+.+....... ....--|||.- .++|||++.
T Consensus 178 -e~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~-~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 178 -EWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS-PIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -EEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS-SCCCEEEEEEETTTTEEEEEET
T ss_pred -EEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC-cCCceEEEEEcCCCCEEEEECC
Confidence 223789996655555555556555442225555542221100111 11134678876 479999987
No 99
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.78 E-value=0.31 Score=47.88 Aligned_cols=181 Identities=16% Similarity=0.150 Sum_probs=93.7
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec-CCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
.|++|+.+ .+|-.||..+.+++..+... + .....+.+.+. ++.++++|+.+ +.|..||.++++
T Consensus 168 ~l~t~s~D----~~v~lwd~~~~~~~~~~~~h--~----~~v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~ 231 (354)
T 2pbi_B 168 QILTASGD----GTCALWDVESGQLLQSFHGH--G----ADVLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQ 231 (354)
T ss_dssp EEEEEETT----SEEEEEETTTCCEEEEEECC--S----SCEEEEEECCCSSCCEEEEEETT------SCEEEEETTTCC
T ss_pred EEEEEeCC----CcEEEEeCCCCeEEEEEcCC--C----CCeEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 34445433 47889999986544333210 0 00111222222 45677777744 469999999999
Q ss_pred eeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EE
Q 012060 309 VVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LI 387 (472)
Q Consensus 309 ~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~ 387 (472)
++-++... ...+..++... ++.+++.|+.++....-|++.- ..+.. ...... .... .+
T Consensus 232 ~~~~~~~h--------~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-----~~~~~----~~~~~~---~~~~~~~ 290 (354)
T 2pbi_B 232 CVQAFETH--------ESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-----REVAI----YSKESI---IFGASSV 290 (354)
T ss_dssp EEEEECCC--------SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-----EEEEE----ECCTTC---CSCEEEE
T ss_pred EEEEecCC--------CCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-----cEEEE----EcCCCc---ccceeEE
Confidence 66665433 11111111222 5778889999887654455431 11111 000000 0111 22
Q ss_pred EE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEee
Q 012060 388 HC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWE 461 (472)
Q Consensus 388 ~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 461 (472)
+. .+|++++++ ++.|.+|+-... +.+ ..+.+ ..+.|+.+++--| +++++=.+-..|-||+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~-------~~~--~~l~~-----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKG-------SRV--SILFG-----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC-------SEE--EEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCC-------ceE--EEEEC-----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 22 245555554 378999985311 111 11222 3457998888533 4566666667888985
No 100
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.77 E-value=0.19 Score=48.66 Aligned_cols=187 Identities=13% Similarity=0.175 Sum_probs=100.8
Q ss_pred EEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++... +.+.| |+.+ .+|-.||..+.+++..+...... ...+.+.+ ++..+++|+. .+.|..
T Consensus 86 ~~~~~~~~~l~s~s~D----~~i~lWd~~~~~~~~~~~~~~~~------~~~~~~sp-dg~~l~~g~~------dg~v~i 148 (321)
T 3ow8_A 86 VDISHTLPIAASSSLD----AHIRLWDLENGKQIKSIDAGPVD------AWTLAFSP-DSQYLATGTH------VGKVNI 148 (321)
T ss_dssp EEECSSSSEEEEEETT----SEEEEEETTTTEEEEEEECCTTC------CCCEEECT-TSSEEEEECT------TSEEEE
T ss_pred EEECCCCCEEEEEeCC----CcEEEEECCCCCEEEEEeCCCcc------EEEEEECC-CCCEEEEEcC------CCcEEE
Confidence 44433 34555 5444 47889999986644444321111 12233333 5566666653 357999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNN 381 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~ 381 (472)
||.++++..++.... +..+..++... ++.+.+.|+.++....-|+++ ...+.. +.....
T Consensus 149 ~~~~~~~~~~~~~~~--------~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~-----~~~~~~----~~~h~~--- 207 (321)
T 3ow8_A 149 FGVESGKKEYSLDTR--------GKFILSIAYSP-DGKYLASGAIDGIINIFDIAT-----GKLLHT----LEGHAM--- 207 (321)
T ss_dssp EETTTCSEEEEEECS--------SSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----TEEEEE----ECCCSS---
T ss_pred EEcCCCceeEEecCC--------CceEEEEEECC-CCCEEEEEcCCCeEEEEECCC-----CcEEEE----EcccCC---
Confidence 999999877776654 11121222233 677788899887654434432 223322 111111
Q ss_pred CcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeecccee
Q 012060 382 GENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGI 457 (472)
Q Consensus 382 ~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~ 457 (472)
.=..++. -+++++++++ +.|.+|+-... .. .+.+-+ ..+.|..+++-- ++++++=.+...|
T Consensus 208 -~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--------~~-~~~~~~-----h~~~v~~~~~sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 208 -PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--------NL-AGTLSG-----HASWVLNVAFCPDDTHFVSSSSDKSV 272 (321)
T ss_dssp -CCCEEEECTTSCEEEEECTTSCEEEEETTTC--------CE-EEEECC-----CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--------ce-eEEEcC-----CCCceEEEEECCCCCEEEEEeCCCcE
Confidence 0112222 2566666655 77999975321 11 122222 245688888852 2445555666789
Q ss_pred EEeecC
Q 012060 458 EVWESS 463 (472)
Q Consensus 458 ~vw~~~ 463 (472)
-||+..
T Consensus 273 ~iwd~~ 278 (321)
T 3ow8_A 273 KVWDVG 278 (321)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 999864
No 101
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.66 E-value=0.026 Score=54.93 Aligned_cols=188 Identities=10% Similarity=0.030 Sum_probs=107.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCccccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEI 258 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~ 258 (472)
+.||+..|. .+ -+++..+|+.+.+-...-++...-... +++..++.||+.-+ ..+.+.+||+.|.+++.+|
T Consensus 32 g~Lyvstg~--~~---~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~g~~lyv~t~---~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 32 DTLFESTGL--YG---RSSVRQVALQTGKVENIHKMDDSYFGE-GLTLLNEKLYQVVW---LKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp TEEEEEECS--TT---TCEEEEEETTTCCEEEEEECCTTCCEE-EEEEETTEEEEEET---TCSEEEEEETTTTEEEEEE
T ss_pred CeEEEECCC--CC---CCEEEEEECCCCCEEEEEecCCCcceE-EEEEeCCEEEEEEe---cCCEEEEEECCCCcEEEEE
Confidence 799998772 22 256788899888755433332222334 38888889999533 2568999999998877766
Q ss_pred ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcc---cccccceeeee
Q 012060 259 GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARF---GDSFADVDVDV 335 (472)
Q Consensus 259 ~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~---~~~~~d~~v~~ 335 (472)
.-..+..|.. ..-.+.||++- | .+.|..+||++.+++=+..-. ...|. --.+ ..
T Consensus 103 ~~g~~~g~gl--------t~Dg~~l~vs~---g----s~~l~viD~~t~~v~~~I~Vg---~~~~p~~~~nel-----e~ 159 (266)
T 2iwa_A 103 THQMKDGWGL--------ATDGKILYGSD---G----TSILYEIDPHTFKLIKKHNVK---YNGHRVIRLNEL-----EY 159 (266)
T ss_dssp ECCSSSCCEE--------EECSSSEEEEC---S----SSEEEEECTTTCCEEEEEECE---ETTEECCCEEEE-----EE
T ss_pred ECCCCCeEEE--------EECCCEEEEEC---C----CCeEEEEECCCCcEEEEEEEC---CCCcccccceeE-----EE
Confidence 4311123332 12357788862 3 358999999999855333311 11111 1121 22
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC-cccCCCCCCCcCeEEEEE--CCEEEEecC
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS-MISSSGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
.+++||+-...++.....|..+-+--.|..++.+.+. +...+. ....-.+|+.- ++++||+++
T Consensus 160 ~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~-~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 160 INGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR-DIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp ETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT-TCCCEEEEEEETTTTEEEEEET
T ss_pred ECCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccc-ccCceEEEEEcCCCCEEEEECC
Confidence 2789998776666665556655441124444421000 001111 01123678877 458999987
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.64 E-value=0.2 Score=50.45 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=65.8
Q ss_pred EEEEe--CCeEEE-EecCCCCCceeEEEeCCCcc---cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCcccc
Q 012060 223 AIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQ---ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 223 ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~---~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
+++.. ++.++| ++.+ ..|-.||..+.+ ++..+.. +......+.+.+....++++|+. .
T Consensus 236 ~v~~~p~~~~~l~s~~~d----g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~~l~tg~~------d 299 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVADD----QKLMIWDTRNNNTSKPSHTVDA------HTAEVNCLSFNPYSEFILATGSA------D 299 (430)
T ss_dssp EEEECSSCTTEEEEEETT----SEEEEEETTCSCSSSCSEEEEC------CSSCEEEEEECSSCTTEEEEEET------T
T ss_pred eeEEeCCCCCEEEEEeCC----CeEEEEECCCCCCCcceeEeec------CCCCeEEEEeCCCCCCEEEEEeC------C
Confidence 35554 456777 5443 478899999842 2211110 01112334455556668888774 3
Q ss_pred ceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 297 GYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 297 ~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
+.|.+||.++ ++++-+.... ...+..+...-.+..+++.|+.++.+..-|++..
T Consensus 300 g~v~vwd~~~~~~~~~~~~~h--------~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 300 KTVALWDLRNLKLKLHSFESH--------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp SEEEEEETTCTTSCSEEEECC--------SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CeEEEEeCCCCCCCeEEeecC--------CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 4799999998 4444444433 2333344455556689999999887766566653
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.63 E-value=0.055 Score=62.17 Aligned_cols=259 Identities=12% Similarity=0.102 Sum_probs=127.1
Q ss_pred CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD 226 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~ 226 (472)
|.|..||... ........+.+.+.++++- ++...+.|+ .+| ++..||..+.+....... ...+.+++.
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~dg-----~i~vwd~~~~~~~~~~~~---~~~v~~~~~ 1052 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS--EDS-----VIQVWNWQTGDYVFLQAH---QETVKDFRL 1052 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC--SSS-----BEEEEETTTTEEECCBCC---SSCEEEEEE
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc--CCC-----EEEEEECCCCceEEEecC---CCcEEEEEE
Confidence 4588888332 2222222222333344432 556677777 454 466777777665543322 222223555
Q ss_pred eCC-eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 227 SPT-TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 227 l~g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
..+ .+++++.+ .+|..||..+.+++..+.... .......+.+ ++.++++|+.+ ++|..||..
T Consensus 1053 ~~~~~l~~~~~d----g~v~vwd~~~~~~~~~~~~~~------~~v~~~~~s~-d~~~l~s~s~d------~~v~iwd~~ 1115 (1249)
T 3sfz_A 1053 LQDSRLLSWSFD----GTVKVWNVITGRIERDFTCHQ------GTVLSCAISS-DATKFSSTSAD------KTAKIWSFD 1115 (1249)
T ss_dssp CSSSEEEEEESS----SEEEEEETTTTCCCEEEECCS------SCCCCEEECS-SSSSCEEECCS------SCCCEECSS
T ss_pred cCCCcEEEEECC----CcEEEEECCCCceeEEEcccC------CcEEEEEECC-CCCEEEEEcCC------CcEEEEECC
Confidence 554 45545443 478999999855333322110 0112233333 55556666543 468899999
Q ss_pred CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcC
Q 012060 306 SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGEN 384 (472)
Q Consensus 306 ~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~ 384 (472)
+++++.+.... ...+..++... ++.+.++|+.+|....-|+++-+ ......+..... ...... .-
T Consensus 1116 ~~~~~~~l~~h--------~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~----~v 1181 (1249)
T 3sfz_A 1116 LLSPLHELKGH--------NGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-TATHGG----WV 1181 (1249)
T ss_dssp SSSCSBCCCCC--------SSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------CCS----CC
T ss_pred CcceeeeeccC--------CCcEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEecccccccc-ccccCc----eE
Confidence 88855544433 11222222333 67788899988875543444322 000000000000 001110 11
Q ss_pred eEEE-EECCEEEEecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeec
Q 012060 385 KLIH-CYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWES 462 (472)
Q Consensus 385 ~~~~-~~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~ 462 (472)
..++ .-+|+..++.+|.|.+|+-... ..-. .++. ..+.|+.+++--| +++++=.+...|-||+-
T Consensus 1182 ~~l~fs~dg~~l~s~~g~v~vwd~~~g----~~~~-~~~~---------~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1182 TDVCFSPDSKTLVSAGGYLKWWNVATG----DSSQ-TFYT---------NGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CEEEECTTSSCEEEESSSEEEBCSSSC----BCCC-CCCC---------SSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEEECCCCCEEEECCCeEEEEECCCC----ceee-eeec---------cCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 2233 3356677777899999985321 1111 1111 2445776666544 34555556678889973
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.63 E-value=0.085 Score=53.31 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=87.0
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCC---eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG---EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDI 350 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~---~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~ 350 (472)
+.|.+.++.++++|+. .+.|..||.+++ +.++...+. ...+-.++..-.+..++++|+.++.+
T Consensus 237 v~~~p~~~~~l~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~i~~~p~~~~~l~tg~~dg~v 302 (430)
T 2xyi_A 237 VAWHLLHESLFGSVAD------DQKLMIWDTRNNNTSKPSHTVDAH--------TAEVNCLSFNPYSEFILATGSADKTV 302 (430)
T ss_dssp EEECSSCTTEEEEEET------TSEEEEEETTCSCSSSCSEEEECC--------SSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred eEEeCCCCCEEEEEeC------CCeEEEEECCCCCCCcceeEeecC--------CCCeEEEEeCCCCCCEEEEEeCCCeE
Confidence 4455557778887763 357999999987 455665544 12222223344455699999999876
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeEEEeecccccccc-------ccCCc
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSLEVWSRVREGRNR-------SCSEG 419 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~-------~~~~~ 419 (472)
..-|++.... +-..+. .... .-..++.. +..++++++ +.|-+|+--...+.. +..+.
T Consensus 303 ~vwd~~~~~~-~~~~~~-------~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 303 ALWDLRNLKL-KLHSFE-------SHKD----EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp EEEETTCTTS-CSEEEE-------CCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred EEEeCCCCCC-CeEEee-------cCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 6556664321 011111 1111 11222322 335666653 889999865421000 00111
Q ss_pred ceeeccccccccCCCCceEEEeecCc--eEEEeeeccceeEEeecC
Q 012060 420 LFRRNFVDRVEDSGRGAISRIDAGGN--RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 420 ~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~ 463 (472)
++ . +- ..++.|+++++--+ .++++=.+-..|.||+.+
T Consensus 371 ~~-~-~~-----~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 371 LF-I-HG-----GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EE-E-CC-----CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EE-E-cC-----CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 21 1 11 13457999888643 478888888999999854
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.62 E-value=0.025 Score=57.32 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=76.5
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
++.+.|+|+ .+| ++..||..+.+-............+.+++.. ++.+++ |+.+ .+|-.||.++.+.
T Consensus 131 ~~~~lasGs--~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D----~~v~iwd~~~~~~ 199 (435)
T 4e54_B 131 HPSTVAVGS--KGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME----GTTRLQDFKGNIL 199 (435)
T ss_dssp CTTCEEEEE--TTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS----SCEEEEETTSCEE
T ss_pred CCCEEEEEe--CCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC----CEEEEeeccCCce
Confidence 456778887 565 3556666555433222222222334356664 454444 6544 4688999887331
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
.. +.. ..-..+....+.+. -++.++++|+.+ +.|..||.+... ++++... ...+..++..
T Consensus 200 ~~-~~~---~~~~~~~~~~~~~~-~~~~~l~~g~~d------g~i~~wd~~~~~-~~~~~~h--------~~~v~~v~~~ 259 (435)
T 4e54_B 200 RV-FAS---SDTINIWFCSLDVS-ASSRMVVTGDNV------GNVILLNMDGKE-LWNLRMH--------KKKVTHVALN 259 (435)
T ss_dssp EE-EEC---CSSCSCCCCCEEEE-TTTTEEEEECSS------SBEEEEESSSCB-CCCSBCC--------SSCEEEEEEC
T ss_pred eE-Eec---cCCCCccEEEEEEC-CCCCEEEEEeCC------CcEeeeccCcce-eEEEecc--------cceEEeeeec
Confidence 10 000 00011111222333 356677777643 469999987654 2332221 1112222233
Q ss_pred ecCCeEEEEcccCCCcccccccccC
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
-.+..+++.|+.++....-|++..+
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCceEEEEecCcceeeEEeccccc
Confidence 3466789899988876554665543
No 106
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=96.59 E-value=0.00099 Score=54.89 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=57.4
Q ss_pred cEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCc--------c---c
Q 012060 17 RVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNR--------L---P 79 (472)
Q Consensus 17 ~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~--------l---~ 79 (472)
.|+|.- +|+.|.++|.+ |.. |.+++.|+... +..+++|-+ ++++.+++.|++|++.-+ + .
T Consensus 2 ~v~L~SsDg~~f~V~~~~-A~~--S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~ 78 (96)
T 2fnj_C 2 YVKLISSDGHEFIVKREH-ALT--SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 78 (96)
T ss_dssp EEEEECTTSCEEEEEHHH-HTT--SHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred eEEEEecCCCEEEeCHHH-HHH--hHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcc
Confidence 467766 89999999997 444 78999998742 333456644 899999999999997633 1 2
Q ss_pred CCCCCcchHHHHhhhhhcCc
Q 012060 80 STASRFSKQELADEALYYGI 99 (472)
Q Consensus 80 ~~~~~~~v~~Ll~eA~~~ql 99 (472)
+ +...+.+|+.+|+||+|
T Consensus 79 v--d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 I--APEIALELLMAANFLDC 96 (96)
T ss_dssp C--CTTTHHHHHHHHHHHTC
T ss_pred c--CHHHHHHHHHHHHHhCc
Confidence 2 23678899999999986
No 107
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.58 E-value=0.15 Score=55.20 Aligned_cols=272 Identities=11% Similarity=0.095 Sum_probs=131.7
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +..+++.+ |.|..||+.. ........+-+.+.++++. ++...++|+ .+| .+..||..+.+.
T Consensus 18 ~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg-----~i~vw~~~~~~~ 89 (814)
T 3mkq_A 18 GIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS--DDF-----RIRVFNYNTGEK 89 (814)
T ss_dssp EEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE--TTS-----EEEEEETTTCCE
T ss_pred EEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe--CCC-----eEEEEECCCCcE
Confidence 3444454 44443333 4588888543 2222222222333344443 566777777 444 456677666554
Q ss_pred ccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCc-ccccccccccCCCcccccccceeEEecCCeEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTL-QISSEIGRQSGASSKNMAVGKLTWIPATGVVLG 285 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~-~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv 285 (472)
... +......+.+++.. ++. |++|+.+ .+|..||..+. +....+. -+....+...|.+.++.+++
T Consensus 90 ~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 90 VVD--FEAHPDYIRSIAVHPTKPYVLSGSDD----LTVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEE--EECCSSCEEEEEECSSSSEEEEEETT----SEEEEEEGGGTSEEEEEEE------CCSSCEEEEEEETTEEEEEE
T ss_pred EEE--EecCCCCEEEEEEeCCCCEEEEEcCC----CEEEEEECCCCceEEEEEc------CCCCcEEEEEEEcCCCCEEE
Confidence 321 22112223235554 343 4445543 47889998873 2111111 01112244556554666777
Q ss_pred EEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee-cCCeEEEEcccCCCcccccccccCCCCcE
Q 012060 286 SAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV-DELTLFKICSKSGDIAMADLRNLGEDPWV 364 (472)
Q Consensus 286 ~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~-~~~~iy~vGg~~g~~~~~dl~s~e~d~W~ 364 (472)
+|+. .++|..||.++++..+...... .....+ ++... -++.++++|+.++....-|+++ ..
T Consensus 158 ~~~~------dg~v~vwd~~~~~~~~~~~~~~----~~~v~~---~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~ 219 (814)
T 3mkq_A 158 SGCL------DRTVKVWSLGQSTPNFTLTTGQ----ERGVNY---VDYYPLPDKPYMITASDDLTIKIWDYQT-----KS 219 (814)
T ss_dssp EEET------TSEEEEEETTCSSCSEEEECCC----TTCCCE---EEECCSTTCCEEEEECTTSEEEEEETTT-----TE
T ss_pred EEeC------CCeEEEEECCCCcceeEEecCC----CCCEEE---EEEEECCCCCEEEEEeCCCEEEEEECCC-----Cc
Confidence 7663 3479999999887666665441 011111 11111 1667777888887644323322 23
Q ss_pred EeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEe
Q 012060 365 YMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRID 441 (472)
Q Consensus 365 ~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~ 441 (472)
.+.. +..... .-..++. -++++++++ .|.|.+|+.... +..+. +- ...+.|..++
T Consensus 220 ~~~~----~~~~~~----~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--------~~~~~-~~-----~~~~~v~~~~ 277 (814)
T 3mkq_A 220 CVAT----LEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--------KVEKT-LN-----VGLERSWCIA 277 (814)
T ss_dssp EEEE----EECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTTC--------SEEEE-EC-----CSSSSEEEEE
T ss_pred EEEE----EcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEE-ee-----cCCCcEEEEE
Confidence 3332 111111 1112222 234444444 388999976422 11111 10 1234677776
Q ss_pred ec--CceEEEeeeccceeEEeecCC
Q 012060 442 AG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 442 ~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
+- |.+++++-...+++-+|....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 278 THPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp ECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EccCCCceEEEEEeCCCEEEEEcCC
Confidence 64 445555555567788887554
No 108
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.58 E-value=0.41 Score=45.45 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=110.1
Q ss_pred CcEEEeee--CceEEeeccc---CCCCCccccccccceeeee---CCeEEEEcCcCCCCceecceeeeecCCCCccccCC
Q 012060 141 GSLWIAHG--GQISVYDWNL---SHSVTVRTHLDNITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS 212 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~---~~m~~~R~~~~~v~~v~~l---~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a 212 (472)
+..++..+ |.|..||... ....+...+-+.+.++++. ++.+++.|+ .+| ++-.||..+.+|..+.
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s--~D~-----~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVMIWKEENGRWSQIA 93 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE--TTT-----EEEEEEBSSSCBCCCE
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc--CCC-----EEEEEEcCCCceEEEE
Confidence 55553433 3477777432 1111222233344455543 256778887 555 5667787777776554
Q ss_pred CCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec---------
Q 012060 213 DPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA--------- 279 (472)
Q Consensus 213 ~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~--------- 279 (472)
.+......+.+++... +.++| |+.+ ..|-.||..+.+..... ...+ +...-....|.+.
T Consensus 94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d----~~v~~wd~~~~~~~~~~-~~~~---h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 94 VHAVHSASVNSVQWAPHEYGPMLLVASSD----GKVSVVEFKENGTTSPI-IIDA---HAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETT----SEEEEEEBCSSSCBCCE-EEEC---CSSCEEEEEECCCC--------
T ss_pred EeecCCCceeEEEeCcCCCCcEEEEEECC----CcEEEEEecCCCceeee-eeec---ccCccceEeecCCcccccccCC
Confidence 3332233343455543 44555 6544 47888998773200000 0000 0000111222221
Q ss_pred ---CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC--CeEEEEcccCCCccccc
Q 012060 280 ---TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE--LTLFKICSKSGDIAMAD 354 (472)
Q Consensus 280 ---~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~~~~~d 354 (472)
++.++++|+.+ ++|.+||.++++..|......... ...+-+++....+ +.+++.|+.|+....-|
T Consensus 166 ~~~~~~~l~sgs~D------~~v~lwd~~~~~~~~~~~~~l~~H----~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 166 GTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ----CCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CCCCcceEEEEcCC------CcEEEEEEcCCCceEEEEEEecCC----CCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 24577777744 469999998765335443221111 1112222233322 57888999887755333
Q ss_pred ccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeecc
Q 012060 355 LRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 355 l~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~ 408 (472)
++. +..+|.... +....... .-..++. -+|++++++ .+.|.+|...
T Consensus 236 ~~~-~~~~~~~~~-----~~~~~~~~--~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDN-EQGPWKKTL-----LKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESS-TTSCCEEEE-----SSSSCCSS--CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCC-CCCccceee-----eecccCCC--cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 332 123454322 11011000 1112222 245555554 3789999864
No 109
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=96.56 E-value=0.0013 Score=59.94 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=65.2
Q ss_pred CCcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC-C-----CCCCCEEE-cCChhhHHHHhhccccCccc-C-----
Q 012060 15 GDRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ-S-----DEPNPIFI-DRDPDVFSVLLSLLRSNRLP-S----- 80 (472)
Q Consensus 15 ~~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~-~-----~~~~~vfi-Drdp~~F~~IL~flrtg~l~-~----- 80 (472)
+..|+|.- +|+.|.+++.+... |.+++.|+... . .....|-+ ++++.+++.|+.|++.-+-. .
T Consensus 6 ~~~i~L~SsDG~~F~V~~~vA~~---S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~ 82 (169)
T 3v7d_A 6 TSNVVLVSGEGERFTVDKKIAER---SLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDD 82 (169)
T ss_dssp CCEEEEECTTCCEEEEEHHHHTT---SHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred CCeEEEEeCCCCEEEecHHHHHH---hHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccc
Confidence 45777765 78999999998555 78999998642 1 22356645 89999999999999664311 0
Q ss_pred -----------------CCCCcchHHHHhhhhhcCcchHHhhhc
Q 012060 81 -----------------TASRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 81 -----------------~~~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
.-+...+-+|+.+|+||+|.+|++.||
T Consensus 83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c 126 (169)
T 3v7d_A 83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGC 126 (169)
T ss_dssp -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 001134567888999999999999998
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.47 Score=47.93 Aligned_cols=240 Identities=10% Similarity=-0.036 Sum_probs=112.4
Q ss_pred ceeeccCCcEEEeee---CceEEeecc--c-CCCCCccc-cc-cccceeeee-CCeEEEEcCcCCCCceecceeeeecCC
Q 012060 134 FTASSDDGSLWIAHG---GQISVYDWN--L-SHSVTVRT-HL-DNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 134 ~r~~~~~g~l~va~G---G~Ve~YDW~--~-~~m~~~R~-~~-~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
+...|. +..+++.| |.|..||.. . ........ .+ ..+.++++- ++..+++|+ .+| .+..+|..
T Consensus 108 ~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~~g-----~v~~~~~~ 179 (450)
T 2vdu_B 108 LRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD--KFG-----DVYSIDIN 179 (450)
T ss_dssp EEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETT
T ss_pred EEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe--CCC-----cEEEEecC
Confidence 334444 44432445 458888854 2 22222111 11 222233432 456667776 444 23344443
Q ss_pred CCccc--cCCCCcCcccceeEEEEeC----CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEE
Q 012060 205 SAHWT--DPSDPRIYRATVTAIADSP----TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI 277 (472)
Q Consensus 205 t~~W~--~~a~m~~~R~~~~ava~l~----g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~ 277 (472)
+.... ....+......+.+++... +.+++ |+.+ ..|-.||..+.+.+..+-. -+......+.+.
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~s 250 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD----EHIKISHYPQCFIVDKWLF-----GHKHFVSSICCG 250 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT----SCEEEEEESCTTCEEEECC-----CCSSCEEEEEEC
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC----CcEEEEECCCCceeeeeec-----CCCCceEEEEEC
Confidence 33221 1112222222333355443 44444 6544 4788999988543322110 011112333444
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC-----CCC------------CCCcccccccceeeeecCCeE
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP-----GSG------------RSARFGDSFADVDVDVDELTL 340 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-----~~~------------~~~R~~~~~~d~~v~~~~~~i 340 (472)
++.++++|+. .+.|.+||.++++++-+.... ... ...-....+.+++....+..|
T Consensus 251 --d~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 251 --KDYLLLSAGG------DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp --STTEEEEEES------SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred --CCCEEEEEeC------CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 7777777763 347999999999866555311 000 000111233344444445566
Q ss_pred EEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC---------eEEEeec
Q 012060 341 FKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG---------SLEVWSR 407 (472)
Q Consensus 341 y~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~---------~~~v~~~ 407 (472)
|+.++.++.+..-|+.....+++..+.. +.... .-..++...+.+|++.+. .|++|.-
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~----~~~~~-----~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGDLALKQI----ITFPY-----NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTCEEEEEE----EECSS-----CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEECCCCeEEEEEeccCCCCceeeccE----eccCC-----ceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 6555466655433441112445555554 32222 244567777777777542 3677764
No 111
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.47 Score=46.11 Aligned_cols=198 Identities=14% Similarity=0.112 Sum_probs=95.3
Q ss_pred EEEeC-CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 224 IADSP-TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 224 va~l~-g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
++..+ +.+++|+.+ ..|..||..+.+++..+... ..+...+.+.+ ++.++++|+.+ +.|..|
T Consensus 212 ~~~~~~~~~~~~~~~----g~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~ 274 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPK----GAIFVYQITEKTPTGKLIGH------HGPISVLEFND-TNKLLLSASDD------GTLRIW 274 (425)
T ss_dssp CEEEETTEEEEECGG----GCEEEEETTCSSCSEEECCC------SSCEEEEEEET-TTTEEEEEETT------SCEEEE
T ss_pred EEEcCCCEEEEEcCC----CeEEEEEcCCCceeeeeccC------CCceEEEEECC-CCCEEEEEcCC------CEEEEE
Confidence 34444 444446443 47889999985543333210 00112233444 45555666533 469999
Q ss_pred cCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCC
Q 012060 303 DPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNG 382 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~ 382 (472)
|.++++.+...... ...+..++... ++ ++++|+.++.+..-|+++ ...+.. +.....
T Consensus 275 d~~~~~~~~~~~~~--------~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~-----~~~~~~----~~~~~~---- 331 (425)
T 1r5m_A 275 HGGNGNSQNCFYGH--------SQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ-----NTLLAL----SIVDGV---- 331 (425)
T ss_dssp CSSSBSCSEEECCC--------SSCEEEEEEET-TT-EEEEEETTSEEEEEETTT-----TEEEEE----EECTTC----
T ss_pred ECCCCccceEecCC--------CccEEEEEECC-CC-EEEEEeCCCcEEEEECCC-----CcEeEe----cccCCc----
Confidence 99999877776544 11121222233 44 777888887654334332 233332 111111
Q ss_pred cCeEEEEE-CCEEEEec--CCeEEEeeccccc-ccccc---CCccee---eccccccccCCCC-ceEEEeec--CceEEE
Q 012060 383 ENKLIHCY-KNQVFVGR--GGSLEVWSRVREG-RNRSC---SEGLFR---RNFVDRVEDSGRG-AISRIDAG--GNRLFV 449 (472)
Q Consensus 383 ~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~-~~~~~---~~~~~r---~~~~~~~~~~~~~-~i~~~~~g--g~r~f~ 449 (472)
.-..++.. ++++++++ ++.|.+|+-.... ....+ ....++ -..+...+....+ .|+.+++- |..|++
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV 411 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEE
Confidence 11122222 34444443 4789999875331 00000 000000 0011111222333 89999985 555655
Q ss_pred eeeccceeEEeec
Q 012060 450 SREDVEGIEVWES 462 (472)
Q Consensus 450 ~~~~~~~~~vw~~ 462 (472)
.- +...|-||+-
T Consensus 412 ~~-~dg~i~iw~~ 423 (425)
T 1r5m_A 412 AY-SLQEGSVVAI 423 (425)
T ss_dssp EE-SSSCCEEEEC
T ss_pred Ee-cCceEEEEee
Confidence 54 4466899984
No 112
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.45 E-value=0.18 Score=53.45 Aligned_cols=241 Identities=9% Similarity=-0.013 Sum_probs=122.0
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeC--CCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDK--STL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp--~t~ 252 (472)
-++.+|+.+. .+ +++..+|..+.+-...-+.. ..-+ +++.. ++ +||++..+ ++|-.||+ .|+
T Consensus 147 p~~~~~vs~~--~d-----~~V~v~D~~t~~~~~~i~~g--~~~~-~v~~spdg~~l~v~~~d----~~V~v~D~~~~t~ 212 (543)
T 1nir_A 147 LPNLFSVTLR--DA-----GQIALVDGDSKKIVKVIDTG--YAVH-ISRMSASGRYLLVIGRD----ARIDMIDLWAKEP 212 (543)
T ss_dssp GGGEEEEEEG--GG-----TEEEEEETTTCCEEEEEECS--TTEE-EEEECTTSCEEEEEETT----SEEEEEETTSSSC
T ss_pred CCCEEEEEEc--CC-----CeEEEEECCCceEEEEEecC--cccc-eEEECCCCCEEEEECCC----CeEEEEECcCCCC
Confidence 3677888876 33 35666777766533211111 1122 25554 33 68885433 68999999 786
Q ss_pred ccccccccccCCCcccccccceeEEe----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC-CCCCC--ccc
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIP----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG-SGRSA--RFG 325 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~-~~~~~--R~~ 325 (472)
+++.+|.. .. .|-.+...+ -+..||++... .++|..||..+.+++.+....+ ..... ...
T Consensus 213 ~~~~~i~~---g~----~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 213 TKVAEIKI---GI----EARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp EEEEEEEC---CS----EEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred cEEEEEec---CC----CcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccC
Confidence 65444432 11 122222333 34567776432 3579999999999887765431 00000 001
Q ss_pred ccccceeeeecCCeEEEEcccCCCcccccccccCCCCc-EEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeE
Q 012060 326 DSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPW-VYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSL 402 (472)
Q Consensus 326 ~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W-~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~ 402 (472)
..++.++++-.+..+|+.+..++.+...|+...+ ... +.+... ...+ ...+.--+..+|++. .+.|
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~~~~i~~~----~~~~------~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLTVTSIGAA----PFLH------DGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCEEEEEECC----SSCC------CEEECTTSCEEEEEEGGGTEE
T ss_pred CceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cceeEEeccC----cCcc------CceECCCCCEEEEEecCCCeE
Confidence 1122233445566777666555554433333221 111 122210 0111 122211233477664 4789
Q ss_pred EEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeee-ccceeEEeecCC
Q 012060 403 EVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRE-DVEGIEVWESSN 464 (472)
Q Consensus 403 ~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~-~~~~~~vw~~~~ 464 (472)
.||+.-.- ++...--+++.++..+|.. -+.-.|.++|+|=+ ..+.|-||++.+
T Consensus 349 ~v~D~~tg--------~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 349 AVIDSKDR--------RLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEETTTT--------EEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEECCCC--------eEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCCceEEEEEeCC
Confidence 99876421 2223323455556555532 12334567888854 567899999876
No 113
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.42 E-value=0.068 Score=51.06 Aligned_cols=232 Identities=10% Similarity=0.017 Sum_probs=119.5
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCCccc-
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKSTLQI- 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t~~~- 254 (472)
.+.+|+... .+ +.+..||+.+.+......... ...+ ++.. ++ +||+.... .+.|.+||+.+.++
T Consensus 9 ~~~~~v~~~--~~-----~~v~~~d~~~~~~~~~~~~~~--~~~~-~~~s~dg~~l~~~~~~---~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 9 SNFGIVVEQ--HL-----RRISFFSTDTLEILNQITLGY--DFVD-TAITSDCSNVVVTSDF---CQTLVQIETQLEPPK 75 (331)
T ss_dssp CCEEEEEEG--GG-----TEEEEEETTTCCEEEEEECCC--CEEE-EEECSSSCEEEEEEST---TCEEEEEECSSSSCE
T ss_pred CCEEEEEec--CC-----CeEEEEeCcccceeeeEEccC--Ccce-EEEcCCCCEEEEEeCC---CCeEEEEECCCCcee
Confidence 567788876 22 367788888877654433221 1222 5543 34 59984322 24889999998553
Q ss_pred ccccccccCCCcccccccc-eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 255 SSEIGRQSGASSKNMAVGK-LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~-~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
...+... ..+.. ..+.+-+..||+. ..++ ....|..||+.+++++-+.... ..+ .+++.
T Consensus 76 ~~~~~~~-------~~~~~~~~~s~dg~~l~~~-~~~~---~~~~i~v~d~~~~~~~~~~~~~---~~~------~~~~~ 135 (331)
T 3u4y_A 76 VVAIQEG-------QSSMADVDITPDDQFAVTV-TGLN---HPFNMQSYSFLKNKFISTIPIP---YDA------VGIAI 135 (331)
T ss_dssp EEEEEEC-------SSCCCCEEECTTSSEEEEC-CCSS---SSCEEEEEETTTTEEEEEEECC---TTE------EEEEE
T ss_pred EEecccC-------CCCccceEECCCCCEEEEe-cCCC---CcccEEEEECCCCCeEEEEECC---CCc------cceEE
Confidence 2222110 11222 3444555667732 2111 1238999999999966654433 111 23334
Q ss_pred eecCCeEEEEcccCCC-cccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CC-EEEEec--CCeEEEeecc
Q 012060 334 DVDELTLFKICSKSGD-IAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KN-QVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~-~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g-~l~~~~--g~~~~v~~~~ 408 (472)
.-.+..||+.+..++. ...-|+.. ...-..... ..+.... .-..++.. +| +||++. ++.|.+|+-.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~--~g~~~~~~~--~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDA--DGVLFDTGQ--EFISGGT-----RPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECT--TCCEEEEEE--EEECSSS-----SEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEEecCCCceEEEEEECC--CCcEeecCC--ccccCCC-----CccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 5656679988765544 33223321 111111100 0010111 11233332 34 588875 4789999853
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.. .+...+ +. .+ .++.+..+++ -|.+||++......|-||+..
T Consensus 207 ~~----~~~~~~-~~-----~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 207 NP----ENITLL-NA-----VG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp ST----TSCEEE-EE-----EE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CC----ccccee-ee-----cc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 21 110001 11 11 1234555555 488899998888889999854
No 114
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.39 E-value=0.32 Score=50.29 Aligned_cols=286 Identities=11% Similarity=0.055 Sum_probs=128.3
Q ss_pred ccceeeccCCcEEEeeeCceEEeecccC----CCCC-ccccccc-cceeeee---CCeEEEEcCcCCCCceecceeeeec
Q 012060 132 STFTASSDDGSLWIAHGGQISVYDWNLS----HSVT-VRTHLDN-ITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 132 ~a~r~~~~~g~l~va~GG~Ve~YDW~~~----~m~~-~R~~~~~-v~~v~~l---~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
.++...|....+.++.++.|..||.... .... ...+-.. +.++++. ++.+.+.|+ .+| ++..||
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~--~dg-----~v~vw~ 94 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD--ESG-----KVIVWG 94 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE--TTS-----EEEEEE
T ss_pred eEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec--CCC-----EEEEEe
Confidence 3455555533344333455878774321 1111 1122233 4455543 567788887 455 233444
Q ss_pred CCCC------ccccCCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccce
Q 012060 203 VASA------HWTDPSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL 274 (472)
Q Consensus 203 p~t~------~W~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~ 274 (472)
..+. .......+......+.+++... +. |++++.+......|-.||... ++..+... .......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--~~~~~~~~------~~~v~~~ 166 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--SLGEVSGH------SQRINAC 166 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--EEEECCSC------SSCEEEE
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC--cceeeecC------CccEEEE
Confidence 4322 1111111111122222355443 33 444655433345677777332 22221110 0011223
Q ss_pred eEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccc
Q 012060 275 TWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMAD 354 (472)
Q Consensus 275 ~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~d 354 (472)
.+.+-+..++++|+. .+.|..||.++.+.+.+..... ..+..+..++....++.++++|+.++....-|
T Consensus 167 ~~~~~~~~~l~~~~~------d~~v~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGD------DGSVVFYQGPPFKFSASDRTHH-----KQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EECSSSSCEEEEEET------TTEEEEEETTTBEEEEEECSSS-----CTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EECCCCCcEEEEEeC------CCcEEEEeCCCcceeeeecccC-----CCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 333434436666663 3579999999999777766441 10002222233443277788888887654333
Q ss_pred ccccCCCCcEEeecCCCC-cccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccccccccCCcceeecccccccc
Q 012060 355 LRNLGEDPWVYMEDKNPS-MISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVED 431 (472)
Q Consensus 355 l~s~e~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~ 431 (472)
+++ ...+...... ..... .-..++..+++.+++++ +.|.+|+-... +..+. +-... .
T Consensus 236 ~~~-----~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------~~~~~-~~~~~-~ 295 (615)
T 1pgu_A 236 GKS-----GEFLKYIEDDQEPVQG-----GIFALSWLDSQKFATVGADATIRVWDVTTS--------KCVQK-WTLDK-Q 295 (615)
T ss_dssp TTT-----CCEEEECCBTTBCCCS-----CEEEEEESSSSEEEEEETTSEEEEEETTTT--------EEEEE-EECCT-T
T ss_pred CCC-----CCEeEEecccccccCC-----ceEEEEEcCCCEEEEEcCCCcEEEEECCCC--------cEEEE-EcCCC-C
Confidence 332 2233321000 00111 11122222666666544 78999986422 11111 11110 1
Q ss_pred CCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 432 SGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 432 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.....|..+.+-.++++++=.....|-+|+..
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp CGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred cccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 12234666665334444444555678888754
No 115
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.18 Score=54.61 Aligned_cols=143 Identities=10% Similarity=0.026 Sum_probs=73.1
Q ss_pred CceEEeeccc-CCCCCc-cccccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEE
Q 012060 149 GQISVYDWNL-SHSVTV-RTHLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAI 224 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~-R~~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~av 224 (472)
|.|..|||.. ...... ..+-+.+.++++. ++.++++|+ .+| ++..||..+.+-......... ..+.++
T Consensus 119 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg-----~v~vwd~~~~~~~~~~~~~~~-~~v~~~ 190 (814)
T 3mkq_A 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--LDR-----TVKVWSLGQSTPNFTLTTGQE-RGVNYV 190 (814)
T ss_dssp SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE--TTS-----EEEEEETTCSSCSEEEECCCT-TCCCEE
T ss_pred CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCcceeEEecCCC-CCEEEE
Confidence 4588888644 121111 1122333345544 456777777 454 455666544332111111111 112224
Q ss_pred EEe---CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 225 ADS---PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 225 a~l---~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+.. ++.+++ |+.+ ..|-.||..+.+++..+... ........+.+ ++.++++|+.+ +.|.
T Consensus 191 ~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~~-~~~~l~~~~~d------g~v~ 253 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDD----LTIKIWDYQTKSCVATLEGH------MSNVSFAVFHP-TLPIIISGSED------GTLK 253 (814)
T ss_dssp EECCSTTCCEEEEECTT----SEEEEEETTTTEEEEEEECC------SSCEEEEEECS-SSSEEEEEETT------SCEE
T ss_pred EEEECCCCCEEEEEeCC----CEEEEEECCCCcEEEEEcCC------CCCEEEEEEcC-CCCEEEEEeCC------CeEE
Confidence 443 455444 6544 37889999886544433210 00112233333 45566666633 4699
Q ss_pred EEcCCCCeeeeEEcCC
Q 012060 301 MWDPRSGEVVWETNEP 316 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~ 316 (472)
.||+.+++.+++...+
T Consensus 254 vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 254 IWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EEETTTCSEEEEECCS
T ss_pred EEECCCCcEEEEeecC
Confidence 9999999988887755
No 116
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.35 E-value=0.19 Score=48.00 Aligned_cols=229 Identities=10% Similarity=0.069 Sum_probs=108.2
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +.++++.+ |.|..||... ........+-..+.++++ -++.+.+.|+ .++ ++..||..+.+-
T Consensus 18 ~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~d~-----~i~vwd~~~~~~ 89 (304)
T 2ynn_A 18 GIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS--DDF-----RIRVFNYNTGEK 89 (304)
T ss_dssp EEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE--TTS-----EEEEEETTTCCE
T ss_pred EEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC--CCC-----EEEEEECCCCcE
Confidence 3444455 44443443 3477777433 211111222222223333 3566777777 444 455666655431
Q ss_pred ccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccc-cccccccCCCcccccccceeEEecCCeEEE
Q 012060 209 TDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQIS-SEIGRQSGASSKNMAVGKLTWIPATGVVLG 285 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~-~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv 285 (472)
+..+......+.+++... +.+.+ |+.+ .+|-.||..+.... ..+. -+.-..+.+.+.+.++.+++
T Consensus 90 --~~~~~~h~~~v~~~~~~~~~~~l~sgs~D----~~v~lWd~~~~~~~~~~~~------~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 90 --VVDFEAHPDYIRSIAVHPTKPYVLSGSDD----LTVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp --EEEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEEGGGTTEEEEEEC------CCCSCEEEEEECTTCTTEEE
T ss_pred --EEEEeCCCCcEEEEEEcCCCCEEEEECCC----CeEEEEECCCCcchhhhhc------ccCCcEEEEEECCCCCCEEE
Confidence 111221222233355543 34555 6554 47889998773211 1000 00111123344445677788
Q ss_pred EEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee-cCCeEEEEcccCCCcccccccccCCCCcE
Q 012060 286 SAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV-DELTLFKICSKSGDIAMADLRNLGEDPWV 364 (472)
Q Consensus 286 ~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~-~~~~iy~vGg~~g~~~~~dl~s~e~d~W~ 364 (472)
+|+.+ ++|..||.++.+...+..... . .++..++... -++.+.+.|+.++....-|+++ ..
T Consensus 158 sgs~D------~~v~iwd~~~~~~~~~~~~~~----~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-----~~ 219 (304)
T 2ynn_A 158 SGCLD------RTVKVWSLGQSTPNFTLTTGQ----E---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-----KS 219 (304)
T ss_dssp EEETT------SEEEEEETTCSSCSEEEECCC----T---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-----TE
T ss_pred EEeCC------CeEEEEECCCCCccceeccCC----c---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-----Cc
Confidence 87743 479999998887555544321 1 1110111111 2566778888887654334432 23
Q ss_pred EeecCCCCcccCCCCCCCcCeE-EEEE-CCEEEEecC--CeEEEeecc
Q 012060 365 YMEDKNPSMISSSGNNNGENKL-IHCY-KNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 365 ~~~~~~~~m~~~~~~~~~~~~~-~~~~-~g~l~~~~g--~~~~v~~~~ 408 (472)
++.. +..... ... ++.. +++++++++ +.|.+|+-.
T Consensus 220 ~~~~----~~~h~~-----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 220 CVAT----LEGHMS-----NVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEE----EECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred ccee----eCCCCC-----CEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 3332 222221 222 2222 345555543 889999864
No 117
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.33 E-value=0.73 Score=43.52 Aligned_cols=228 Identities=13% Similarity=0.149 Sum_probs=108.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++...+.|+ .+| .+..||..+.+.... +......+.+++.. ++.+.+ |+.+ ..|..||..+.+++
T Consensus 34 ~~~~l~s~~--~dg-----~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 34 NGEWLASSS--ADK-----LIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDD----KTLKIWDVSSGKCL 100 (312)
T ss_dssp TSSEEEEEE--TTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTCCEE
T ss_pred CCCEEEEee--CCC-----eEEEEeCCCcccchh--hccCCCceEEEEEcCCCCEEEEECCC----CEEEEEECCCCcEE
Confidence 445566666 444 234455444433221 11112223335544 344444 6544 47889999985543
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.... -......+.+ ++.++++|+.+ +.|..||.++++.+.+.... ...+..++...
T Consensus 101 ~~~~~~~------~~v~~~~~~~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~ 159 (312)
T 4ery_A 101 KTLKGHS------NYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVKTGKCLKTLPAH--------SDPVSAVHFNR 159 (312)
T ss_dssp EEEECCS------SCEEEEEECS-SSSEEEEEETT------SCEEEEETTTCCEEEEECCC--------SSCEEEEEECT
T ss_pred EEEcCCC------CCEEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCEEEEEecCC--------CCcEEEEEEcC
Confidence 3332100 0011122223 45566666643 46999999999877666544 11222222233
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeE-EEE-ECCEEEEe--cCCeEEEeeccccc
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKL-IHC-YKNQVFVG--RGGSLEVWSRVREG 411 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~-~~~-~~g~l~~~--~g~~~~v~~~~~~~ 411 (472)
++.+++.|+.++....-|+++- ..+.. +..... .... ++. -+++.+++ ..+.|.+|+-...
T Consensus 160 -~~~~l~~~~~d~~i~~wd~~~~-----~~~~~----~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~- 224 (312)
T 4ery_A 160 -DGSLIVSSSYDGLCRIWDTASG-----QCLKT----LIDDDN----PPVSFVKFSPNGKYILAATLDNTLKLWDYSKG- 224 (312)
T ss_dssp -TSSEEEEEETTSCEEEEETTTC-----CEEEE----ECCSSC----CCEEEEEECTTSSEEEEEETTTEEEEEETTTT-
T ss_pred -CCCEEEEEeCCCcEEEEECCCC-----ceeeE----EeccCC----CceEEEEECCCCCEEEEEcCCCeEEEEECCCC-
Confidence 6778889998887554344431 12211 111110 0111 222 13343333 3488999975321
Q ss_pred cccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+. .+.+.++... .......+..-+++++++=.+...|-||+..
T Consensus 225 -------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 225 -------KC-LKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp -------EE-EEEECSSCCS-SSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred -------cE-EEEEEecCCc-eEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 11 2222222111 1112234444556666666666778888854
No 118
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.23 E-value=0.089 Score=50.44 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=92.5
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.++.||+++|..|. ++|..+|+.+++++=+.. +...-++.++ +..+++||++..+++....-|..+.
T Consensus 29 ~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~----l~~~~fgeGi-----~~~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 29 LRGHLYESTGETGR----SSVRKVDLETGRILQRAE----VPPPYFGAGI-----VAWRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp ETTEEEEEECCTTS----CEEEEEETTTCCEEEEEE----CCTTCCEEEE-----EEETTEEEEEESSSSEEEEEETTTT
T ss_pred ECCEEEEECCCCCC----ceEEEEECCCCCEEEEEe----CCCCcceeEE-----EEeCCEEEEEEeeCCEEEEEECCcC
Confidence 46899999886664 489999999999554332 2345578885 7789999999877776554455444
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+ .++. .+.+. .+-+++.-+++||++-| +.|.++++.-. ++.|+==|+... ..-..+
T Consensus 96 ~-----~~~t----i~~~~-----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~--------~~~~~I~V~~~g-~~~~~l 152 (243)
T 3mbr_X 96 T-----PRAR----FRYPG-----EGWALTSDDSHLYMSDGTAVIRKLDPDTL--------QQVGSIKVTAGG-RPLDNL 152 (243)
T ss_dssp E-----EEEE----EECSS-----CCCEEEECSSCEEEECSSSEEEEECTTTC--------CEEEEEECEETT-EECCCE
T ss_pred c-----EEEE----EeCCC-----CceEEeeCCCEEEEECCCCeEEEEeCCCC--------eEEEEEEEccCC-cccccc
Confidence 3 3332 22222 26788777788999955 77877776422 222332222200 011245
Q ss_pred EEEeecCceEEEeeeccceeEEee
Q 012060 438 SRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 438 ~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
..++.-+.|||+.=.+.+.|-|=+
T Consensus 153 NeLe~~~G~lyanvw~s~~I~vID 176 (243)
T 3mbr_X 153 NELEWVNGELLANVWLTSRIARID 176 (243)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEC
T ss_pred eeeEEeCCEEEEEECCCCeEEEEE
Confidence 566666779998876655555544
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.05 Score=59.79 Aligned_cols=184 Identities=16% Similarity=0.163 Sum_probs=92.9
Q ss_pred CceEEeecc--c-CCCCCccccccccceeeee-C--CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCccccee
Q 012060 149 GQISVYDWN--L-SHSVTVRTHLDNITSIRHV-W--SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVT 222 (472)
Q Consensus 149 G~Ve~YDW~--~-~~m~~~R~~~~~v~~v~~l-~--~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ 222 (472)
|.|..||.. . ......+.+-+.+.++++. + +...+.|+ .+| ++-.||..+.+|..+..+......+.
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--~Dg-----~I~vwd~~~~~~~~~~~~~~h~~~V~ 103 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVLIWKEENGRWSQIAVHAVHSASVN 103 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE--TTS-----CEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe--CCC-----eEEEEECCCCcccccccccCCCCCeE
Confidence 458888743 1 1111222233444455553 3 66777777 555 45667777777666554444444444
Q ss_pred EEEEeC---CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec------------CCeEEEE
Q 012060 223 AIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA------------TGVVLGS 286 (472)
Q Consensus 223 ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~------------~g~Lyv~ 286 (472)
+++... +.+++ |+.+ .+|-.||..+.+....+-.. . +......+.+.+. ++.++++
T Consensus 104 ~v~~sp~~~~~~l~sgs~d----g~I~vwdl~~~~~~~~~~~~--~--~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s 175 (753)
T 3jro_A 104 SVQWAPHEYGPLLLVASSD----GKVSVVEFKENGTTSPIIID--A--HAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (753)
T ss_dssp EEEECCGGGCSEEEEEETT----SEEEEEECCSSSCCCCEEEE--C--CSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred EEEECCCCCCCEEEEEeCC----CcEEEEEeecCCCcceeEee--c--CCCceEEEEecCcccccccccccCCCCCEEEE
Confidence 455553 44555 6544 47889998874211110000 0 0001122223332 4566677
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC--CeEEEEcccCCCcccccccc
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE--LTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~~~~~dl~s 357 (472)
|+.+ +.|..||.+++...+.......... ..+..++....+ +.+++.|+.++....-|+++
T Consensus 176 gs~d------g~I~iwd~~~~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 176 GGAD------NLVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EETT------SCEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EECC------CeEEEEeccCCcccceeeeeecCCC----CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 6644 4699999998854454443311111 111122223322 78888999888755434443
No 120
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.15 E-value=0.75 Score=46.03 Aligned_cols=234 Identities=12% Similarity=0.158 Sum_probs=113.2
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.+++.|+ .+| ++..||..+.+-... +......+.+++.. ++.+.| |+.+ .+|-.||..+.+.+
T Consensus 119 ~~~~l~s~s--~Dg-----~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D----~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 119 VFSVMVSAS--EDA-----TIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD----MTIKLWDFQGFECI 185 (410)
T ss_dssp SSSEEEEEE--SSS-----CEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT----SCCCEEETTSSCEE
T ss_pred CCCEEEEEe--CCC-----eEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCcee
Confidence 356677777 454 456677665543221 22122233335554 345666 6555 35778999885533
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.. +...-..+.+.+ ++..+++|+. .++|.+||.++++++-+..... ..+..++ -.
T Consensus 186 ~~~~~------h~~~V~~v~~~p-~~~~l~s~s~------D~~i~~wd~~~~~~~~~~~~h~--------~~v~~~~-~~ 243 (410)
T 1vyh_C 186 RTMHG------HDHNVSSVSIMP-NGDHIVSASR------DKTIKMWEVQTGYCVKTFTGHR--------EWVRMVR-PN 243 (410)
T ss_dssp ECCCC------CSSCEEEEEECS-SSSEEEEEET------TSEEEEEETTTCCEEEEEECCS--------SCEEEEE-EC
T ss_pred EEEcC------CCCCEEEEEEeC-CCCEEEEEeC------CCeEEEEECCCCcEEEEEeCCC--------ccEEEEE-EC
Confidence 33221 000112223333 4555566663 3579999999998766665431 1111111 22
Q ss_pred cCCeEEEEcccCCCcccccccccC-------CCCcE-Ee--ecCCCC--cccCCCCCCCcCeEEEEECCEEEEec--CCe
Q 012060 336 DELTLFKICSKSGDIAMADLRNLG-------EDPWV-YM--EDKNPS--MISSSGNNNGENKLIHCYKNQVFVGR--GGS 401 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e-------~d~W~-~~--~~~~~~--m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~ 401 (472)
-++.+++.|+.++....-|+++-+ ....+ .+ .|.... +.... + .........|.+++++ .+.
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-G---SETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-S---CC-------CCEEEEEETTSE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-c---ccccccCCCCCEEEEEeCCCe
Confidence 367888899988775544544322 11111 11 110000 00000 0 0111111224455554 378
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeec-CceEEEeeeccceeEEeecCC
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG-GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g-g~r~f~~~~~~~~~~vw~~~~ 464 (472)
|.+|+--.. .. -+.+.++ .+.|+.+.+- .++++++=.+...|-||+...
T Consensus 320 i~iwd~~~~--------~~-~~~~~~h-----~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 320 IKMWDVSTG--------MC-LMTLVGH-----DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp EEEEETTTT--------EE-EEEEECC-----SSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred EEEEECCCC--------ce-EEEEECC-----CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 999975311 11 1223332 3468777764 234555666667899998643
No 121
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.15 E-value=0.27 Score=48.86 Aligned_cols=237 Identities=13% Similarity=0.114 Sum_probs=116.6
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++..++.|+ .+| ++..||..+.+-... +......+.+++.. ++. |+.|+.+ .+|-.||..+.+..
T Consensus 134 dg~~l~s~~--~d~-----~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d----~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 134 DGKFLATGA--EDR-----LIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD----RTVRIWDLRTGQCS 200 (393)
T ss_dssp TSSEEEEEE--TTS-----CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEE
T ss_pred CCCEEEEEc--CCC-----eEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC----CcEEEEECCCCeeE
Confidence 567777887 454 455666665542221 11112222235544 333 4445444 47889999985532
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.. .. ......+.+.++.++++|+.+ +.|..||.++++++-....+..... .....+..++...
T Consensus 201 ~~~~~---~~----~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~ 266 (393)
T 1erj_A 201 LTLSI---ED----GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGT-GHKDSVYSVVFTR 266 (393)
T ss_dssp EEEEC---SS----CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------C-CCSSCEEEEEECT
T ss_pred EEEEc---CC----CcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCC-CCCCCEEEEEECC
Confidence 22221 00 112233444578888888744 4699999999986655433210000 0011121222233
Q ss_pred cCCeEEEEcccCCCcccccccccCC-------CCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEe
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGE-------DPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVW 405 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~-------d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~ 405 (472)
++.+.+.|+.++....-|++..+. +...+... +..... .-..++. -+++.+++++ +.|.+|
T Consensus 267 -~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~----~~~h~~----~v~~~~~~~~~~~l~sgs~D~~v~iw 337 (393)
T 1erj_A 267 -DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT----YIGHKD----FVLSVATTQNDEYILSGSKDRGVLFW 337 (393)
T ss_dssp -TSSEEEEEETTSEEEEEEC---------------CEEEE----EECCSS----CEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE----EecccC----cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 567778898888765545554320 00111110 111110 0111222 2345555543 789999
Q ss_pred eccccccccccCCcceeeccccccccCCCCceEEEeecC-------ceEEEeeeccceeEEeecCC
Q 012060 406 SRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-------NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 406 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-------~r~f~~~~~~~~~~vw~~~~ 464 (472)
+.-.. +.+ ..+-+ ..+.|..+++-- .++|++=.+-..|-||+...
T Consensus 338 d~~~~-------~~~--~~l~~-----h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 338 DKKSG-------NPL--LMLQG-----HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTTC-------CEE--EEEEC-----CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ECCCC-------eEE--EEECC-----CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 85311 111 11112 345688888753 46788888888999998643
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.13 Score=56.57 Aligned_cols=236 Identities=13% Similarity=0.109 Sum_probs=116.1
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-C--CeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P--TTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~--g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++..++.|+ .+| ++..||....++..+..+...+..+.+++.. + +.+.+ |+.+ .+|-.||..+.+
T Consensus 20 dg~~latg~--~dg-----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D----g~I~vwd~~~~~ 88 (753)
T 3jro_A 20 YGKRLATCS--SDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVLIWKEENGR 88 (753)
T ss_dssp SSCCEEEEE--TTT-----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT----SCEEEEEEETTE
T ss_pred CCCeEEEEE--CCC-----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC----CeEEEEECCCCc
Confidence 466677777 455 4556666655565554444344444446654 2 44444 6554 368889988843
Q ss_pred --cccccccccCCCcccccccceeEEecC-CeEEEEEEeCCCccccceEEEEcCCCCeee--eEEcCCCCCCCCcccccc
Q 012060 254 --ISSEIGRQSGASSKNMAVGKLTWIPAT-GVVLGSAIAWGAFGYSGYVRMWDPRSGEVV--WETNEPGSGRSARFGDSF 328 (472)
Q Consensus 254 --~~~~~~~~~~~~W~~v~~m~~~~~~~~-g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~v--W~~~~~~~~~~~R~~~~~ 328 (472)
++..+.. +......+.+.+.. +.++++|+. .+.|..||.+++... ...... ...+
T Consensus 89 ~~~~~~~~~------h~~~V~~v~~sp~~~~~~l~sgs~------dg~I~vwdl~~~~~~~~~~~~~~--------~~~v 148 (753)
T 3jro_A 89 WSQIAVHAV------HSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAH--------AIGV 148 (753)
T ss_dssp EEEEEEECC------CSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCSSSCCCCEEEECC--------SSCE
T ss_pred ccccccccC------CCCCeEEEEECCCCCCCEEEEEeC------CCcEEEEEeecCCCcceeEeecC--------CCce
Confidence 1111100 00111223344431 666677663 347999999888411 111111 1111
Q ss_pred cceeeeec------------CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-C---C
Q 012060 329 ADVDVDVD------------ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-K---N 392 (472)
Q Consensus 329 ~d~~v~~~------------~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~---g 392 (472)
..++.... ++.++++|+.+|....-|+++- ..++..+.. +..... .=..++.. + +
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~----~~~h~~----~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLEST----LEGHSD----WVRDVAWSPTVLLR 219 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT-TTEEEEEEE----ECCCSS----CEEEEEECCCCSSS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC-cccceeeee----ecCCCC----cEEEEEeccCCCCC
Confidence 11111221 4677888988887654455432 333455443 222221 11122222 2 5
Q ss_pred EEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 393 QVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 393 ~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.++++++ |.|.+|+-.... ......+ ... ....+.|+.+++ .|..|+..-. ...|-||+..
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~-----~~~--~~~~~~v~~l~~spdg~~l~s~s~-Dg~I~vwd~~ 284 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQ--GPWKKTL-----LKE--EKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 284 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSS--SCCBCCB-----SSS--SCCSSCCCCEEECTTTCCEEEECS-SSCEECCBCC
T ss_pred CEEEEEecCCEEEEecCCCCC--CcceeEE-----ecc--CCCCCceEEEEEcCCCCEEEEEcC-CCEEEEEecC
Confidence 6666654 789999864320 0000011 000 123456777766 4555555544 4569999865
No 123
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.37 Score=47.98 Aligned_cols=157 Identities=16% Similarity=0.205 Sum_probs=86.7
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.++++|+. .+.|..||.++++++++...+. . ...+..++... ++.+.++|+.++....-|+++
T Consensus 181 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~---h---~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-- 245 (437)
T 3gre_A 181 EKSLLVALTN------LSRVIIFDIRTLERLQIIENSP---R---HGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF-- 245 (437)
T ss_dssp SCEEEEEEET------TSEEEEEETTTCCEEEEEECCG---G---GCCEEEEEECT-TSCEEEEEETTSCEEEEETTT--
T ss_pred CCCEEEEEeC------CCeEEEEeCCCCeeeEEEccCC---C---CCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC--
Confidence 4667777763 3579999999999888887641 1 11221222222 677888999888755445443
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEE--------CCEEEEecC--CeEEEeeccccc-------cccccCCccee
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCY--------KNQVFVGRG--GSLEVWSRVREG-------RNRSCSEGLFR 422 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--------~g~l~~~~g--~~~~v~~~~~~~-------~~~~~~~~~~r 422 (472)
...+.. +... ....|.++ +++++++++ +.|.+|+-...+ ....+....|.
T Consensus 246 ---~~~~~~----~~~~------~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 246 ---NVLIRS----WSFG------DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFL 312 (437)
T ss_dssp ---TEEEEE----EBCT------TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGS
T ss_pred ---ccEEEE----EecC------CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceec
Confidence 233332 1111 12233333 355666654 669999864220 00000000110
Q ss_pred e--ccccc---cccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 423 R--NFVDR---VEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 423 ~--~~~~~---~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
- ..+.. ..+...+.|+.+++-.++++++=.+...|-||+...
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred ccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence 0 00000 001244578888888888999988889999999654
No 124
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.02 E-value=0.29 Score=46.98 Aligned_cols=244 Identities=8% Similarity=-0.036 Sum_probs=115.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.++++|+ .+| .+..||..+.+|..+..+......+.+++.. ++.+++ |+.+ ..|-.||..+.+..
T Consensus 19 ~~~~l~~~~--~d~-----~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 19 DRTQIAICP--NNH-----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD----RNAYVWTLKGRTWK 87 (372)
T ss_dssp TSSEEEEEC--SSS-----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT----SCEEEEEEETTEEE
T ss_pred CCCEEEEEe--CCC-----EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC----CeEEEEECCCCeee
Confidence 567777887 444 5667777777665555444334444345555 344444 6544 36888998874311
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+-.. -.......+.+. -++.++++|+.+ +.|..||.++++..+...... ... ...+.+++...
T Consensus 88 ~~~~~~----~~~~~v~~~~~~-~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~---~~~i~~~~~~~ 152 (372)
T 1k8k_C 88 PTLVIL----RINRAARCVRWA-PNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPI---RSTVLSLDWHP 152 (372)
T ss_dssp EEEECC----CCSSCEEEEEEC-TTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTC---CSCEEEEEECT
T ss_pred eeEEee----cCCCceeEEEEC-CCCCEEEEEeCC------CEEEEEEecCCCcceeeeeee-ccc---CCCeeEEEEcC
Confidence 111000 000011122233 355666666633 468899988875323222110 000 11121222233
Q ss_pred cCCeEEEEcccCCCcccccccccC------CCCcEEeecCCCC---cccCCCCCCCcCeEEEE-ECCEEEEe--cCCeEE
Q 012060 336 DELTLFKICSKSGDIAMADLRNLG------EDPWVYMEDKNPS---MISSSGNNNGENKLIHC-YKNQVFVG--RGGSLE 403 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e------~d~W~~~~~~~~~---m~~~~~~~~~~~~~~~~-~~g~l~~~--~g~~~~ 403 (472)
++.++++|+.++....-|++.-+ ...|..-.+..+. +..... .-..++. -+++.+++ ..+.|.
T Consensus 153 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 153 -NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG----WVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp -TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS----CEEEEEECSSSSEEEEEETTTEEE
T ss_pred -CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC----eEEEEEECCCCCEEEEEeCCCEEE
Confidence 66778888888776554543211 1222210000000 111110 1112222 14444444 347899
Q ss_pred EeeccccccccccCCcceeeccccccccCCCCceEEEeec-CceEEEeeeccceeEEeecCCCCc
Q 012060 404 VWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG-GNRLFVSREDVEGIEVWESSNLSG 467 (472)
Q Consensus 404 v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g-g~r~f~~~~~~~~~~vw~~~~~~~ 467 (472)
+|+-... +..+. +- ...+.|..+++- .++++++- ....|-||+...+.|
T Consensus 228 i~d~~~~--------~~~~~-~~-----~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 228 LADADKK--------MAVAT-LA-----SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG 277 (372)
T ss_dssp EEEGGGT--------TEEEE-EE-----CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred EEECCCC--------ceeEE-Ec-----cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCc
Confidence 9986422 11111 11 124468877774 22444444 667889999766334
No 125
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.25 Score=48.13 Aligned_cols=149 Identities=9% Similarity=0.112 Sum_probs=81.1
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCC
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKS 250 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~ 250 (472)
+++...+..+++|+ .+| .+..||..+.+-. ..+......+.+++.. ++.+++ |+.+ ..|-.||..
T Consensus 211 ~~~~~~~~~~~~~~--~~g-----~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~ 277 (425)
T 1r5m_A 211 DVEWVDDDKFVIPG--PKG-----AIFVYQITEKTPT--GKLIGHHGPISVLEFNDTNKLLLSASDD----GTLRIWHGG 277 (425)
T ss_dssp CCEEEETTEEEEEC--GGG-----CEEEEETTCSSCS--EEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEECSS
T ss_pred EEEEcCCCEEEEEc--CCC-----eEEEEEcCCCcee--eeeccCCCceEEEEECCCCCEEEEEcCC----CEEEEEECC
Confidence 45556667777887 343 4566776654322 1111112222235544 344444 6544 368899998
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
+.+++..+... ......+.+.+ ++ ++++++. .+.|.+||.++++++....... ..+..
T Consensus 278 ~~~~~~~~~~~------~~~i~~~~~~~-~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~--------~~i~~ 335 (425)
T 1r5m_A 278 NGNSQNCFYGH------SQSIVSASWVG-DD-KVISCSM------DGSVRLWSLKQNTLLALSIVDG--------VPIFA 335 (425)
T ss_dssp SBSCSEEECCC------SSCEEEEEEET-TT-EEEEEET------TSEEEEEETTTTEEEEEEECTT--------CCEEE
T ss_pred CCccceEecCC------CccEEEEEECC-CC-EEEEEeC------CCcEEEEECCCCcEeEecccCC--------ccEEE
Confidence 86544433210 01113334444 44 5556553 3579999999999887777541 12222
Q ss_pred eeeeecCCeEEEEcccCCCcccccccc
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++... ++.++++|+.++....-|++.
T Consensus 336 ~~~s~-~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 336 GRISQ-DGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEECHH
T ss_pred EEEcC-CCCEEEEEECCCeEEEEECCC
Confidence 22233 567788888887765545543
No 126
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.97 Score=45.51 Aligned_cols=255 Identities=10% Similarity=-0.058 Sum_probs=118.5
Q ss_pred cceeeee-CCe-EEEEcCcCCCCceecceeeeecCCCCccccCCCCc--CcccceeEEEEe-CCe-EEEEecCCCCCcee
Q 012060 171 ITSIRHV-WSD-VAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR--IYRATVTAIADS-PTT-VFSSLVCPHKENSV 244 (472)
Q Consensus 171 v~~v~~l-~~~-lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~--~~R~~~~ava~l-~g~-IYAGg~~~~~l~sV 244 (472)
+.++++- ++. |+++|+ .+| ++..||........+..+. .....+.+++.. ++. |++|..+ ..|
T Consensus 105 v~~~~~s~d~~~l~~~~~--~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~----g~v 173 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACAD--SDK-----SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF----GDV 173 (450)
T ss_dssp EEEEEECTTSSEEEEEEG--GGT-----EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT----SEE
T ss_pred eEEEEEcCCCCEEEEEEC--CCC-----eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC----CcE
Confidence 3344432 344 468887 444 4556666521222222221 101122235554 343 5546443 356
Q ss_pred EEEeCCCccccc-ccccccCCCcccccccceeEEec--CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 245 LLIDKSTLQISS-EIGRQSGASSKNMAVGKLTWIPA--TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 245 E~YDp~t~~~~~-~~~~~~~~~W~~v~~m~~~~~~~--~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
-.||..+.+... .+....+ +......+.+.+- .+.++++|+.+ +.|.+||.++++++-++....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h---- 240 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILG---HVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVDKWLFGH---- 240 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEE---CSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEEEECCCC----
T ss_pred EEEecCCcccccccceeeec---ccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceeeeeecCC----
Confidence 788877643221 0000000 0011123445553 16666777643 469999999998655544221
Q ss_pred CcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCC---CCccc----------CCC--CCCCcCeE
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKN---PSMIS----------SSG--NNNGENKL 386 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~---~~m~~----------~~~--~~~~~~~~ 386 (472)
...+..++.. ++.+++.|+.++.+..-|+++-+ -...-... .++.. ... .....-..
T Consensus 241 ---~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 241 ---KHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGK---NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp ---SSCEEEEEEC--STTEEEEEESSSEEEEEETTTCC---EEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ---CCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCc---EeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 1112222233 77778888888765544544322 11110000 00000 000 00001123
Q ss_pred EEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec-------cc
Q 012060 387 IHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED-------VE 455 (472)
Q Consensus 387 ~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~-------~~ 455 (472)
++.. +..|+++. .+.|.+|.-.+. +...+. .+...+ ..+.|.++++-.++++++-.. .+
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~------~~~~l~--~~~~~~--~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~ 382 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEK------QKGDLA--LKQIIT--FPYNVISLSAHNDEFQVTLDNKESSGVQKN 382 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSS------STTCEE--EEEEEE--CSSCEEEEEEETTEEEEEECCTTCCSSCCC
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccC------CCCcee--eccEec--cCCceEEEEecCCcEEEEEecccCCCCCCc
Confidence 3333 55677764 588999986111 110000 011111 126799999999999999765 34
Q ss_pred eeEEeecCCCCc
Q 012060 456 GIEVWESSNLSG 467 (472)
Q Consensus 456 ~~~vw~~~~~~~ 467 (472)
.|+||.-..-.|
T Consensus 383 ~i~v~~~~~~~~ 394 (450)
T 2vdu_B 383 FAKFIEYNLNEN 394 (450)
T ss_dssp SEEEEEEETTTT
T ss_pred ceEEEEEEcCCC
Confidence 578887544444
No 127
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.88 E-value=0.49 Score=46.94 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=66.8
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
+..+++.+ |.|..||... ........+-..+.++++. ++...+.|+ .++ ++-.||..+.+....-...
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~-----~v~iwd~~~~~~~~~~~~~- 206 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--GDR-----TVRIWDLRTGQCSLTLSIE- 206 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEEEEEECS-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec--CCC-----cEEEEECCCCeeEEEEEcC-
Confidence 44443333 3487877332 1111112222333344443 455666666 444 4566777665433221111
Q ss_pred cccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCC-CcccccccceeEEecCCeEEEEEEeCCC
Q 012060 217 YRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGA-SSKNMAVGKLTWIPATGVVLGSAIAWGA 292 (472)
Q Consensus 217 ~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~-~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~ 292 (472)
..+.+++.. ++.++| |+.+ .+|..||..+.+.+..+...... .-+.-....+.+. -++.++++|+.
T Consensus 207 --~~v~~~~~~~~~~~~l~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~--- 276 (393)
T 1erj_A 207 --DGVTTVAVSPGDGKYIAAGSLD----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSL--- 276 (393)
T ss_dssp --SCEEEEEECSTTCCEEEEEETT----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEET---
T ss_pred --CCcEEEEEECCCCCEEEEEcCC----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeC---
Confidence 122224443 566666 6554 46889999885544433221000 0000011122222 35666677764
Q ss_pred ccccceEEEEcCCCCe
Q 012060 293 FGYSGYVRMWDPRSGE 308 (472)
Q Consensus 293 ~~~~~sve~yDp~~~~ 308 (472)
.++|.+||.++..
T Consensus 277 ---d~~v~~wd~~~~~ 289 (393)
T 1erj_A 277 ---DRSVKLWNLQNAN 289 (393)
T ss_dssp ---TSEEEEEEC----
T ss_pred ---CCEEEEEECCCCC
Confidence 3479999988754
No 128
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=95.80 E-value=0.0033 Score=53.30 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCCCcEEEE-ECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCcc------cC
Q 012060 13 QNGDRVKLN-VGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNRL------PS 80 (472)
Q Consensus 13 ~~~~~V~Ln-VGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~l------~~ 80 (472)
..+..|+|. -+|+.|.+.+.+... |..++.|+... +...++|-+ .+++.+++.|+.|++.-+- .+
T Consensus 14 ~~~~~v~L~SsDG~~F~V~~~~A~~---S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i 90 (112)
T 1vcb_B 14 PDAMYVKLISSDGHEFIVKREHALT---SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI 90 (112)
T ss_dssp ---CEEEEECTTSCEEEEEHHHHHT---SHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCCCEEEEEcCCCCEEEECHHHHHH---hHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCC
Confidence 345678887 699999999997655 78999998742 223356644 8999999999999965321 11
Q ss_pred C---CCCcchHHHHhhhhhcCc
Q 012060 81 T---ASRFSKQELADEALYYGI 99 (472)
Q Consensus 81 ~---~~~~~v~~Ll~eA~~~ql 99 (472)
+ -+...+.+|+.+|+||+|
T Consensus 91 ~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 91 PEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHhCc
Confidence 1 122467788899999986
No 129
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=95.80 E-value=1.1 Score=46.23 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=87.4
Q ss_pred eEEeeccc-CCCCCccccccccceeeeeCC-e-EEEEcCcCCCCceecceeeeecCCCCccccCCCCcCccc---ceeEE
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHVWS-D-VAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRA---TVTAI 224 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~-~-lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~---~~~av 224 (472)
...+.|.. ......+.+-..+.++++..+ . +++.|+ .+| .+..||..+.+-.. .+..... .+.++
T Consensus 142 ~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~-----~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 142 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG--DDG-----SVVFYQGPPFKFSA--SDRTHHKQGSFVRDV 212 (615)
T ss_dssp EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE--TTT-----EEEEEETTTBEEEE--EECSSSCTTCCEEEE
T ss_pred cEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEe--CCC-----cEEEEeCCCcceee--eecccCCCCceEEEE
Confidence 34445554 322222223233334444333 2 677776 444 45566655443222 2221122 23335
Q ss_pred EEeC--Ce-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 225 ADSP--TT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 225 a~l~--g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
+... +. |++|+.+ ..|-.||..+.+++..+.......-.. ...+.+. ++.++++++. .+.|..
T Consensus 213 ~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~--~~~~l~~~~~------d~~i~~ 278 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSD----RKISCFDGKSGEFLKYIEDDQEPVQGG--IFALSWL--DSQKFATVGA------DATIRV 278 (615)
T ss_dssp EECSTTCCEEEEEETT----CCEEEEETTTCCEEEECCBTTBCCCSC--EEEEEES--SSSEEEEEET------TSEEEE
T ss_pred EECCCCCCEEEEEeCC----CeEEEEECCCCCEeEEecccccccCCc--eEEEEEc--CCCEEEEEcC------CCcEEE
Confidence 5553 34 4446554 368899999877666551100000011 1223333 7777777763 357999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
||.++++.+.+...+....... -.+ +...++...++|+.++....-|++
T Consensus 279 wd~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 279 WDVTTSKCVQKWTLDKQQLGNQ-QVG-----VVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EETTTTEEEEEEECCTTCGGGC-EEE-----EEEEETTEEEEEETTSCEEEEETT
T ss_pred EECCCCcEEEEEcCCCCcccCc-eeE-----EEeCCCCeEEEEECCCCEEEEECC
Confidence 9999999777776551000011 111 122266677788888765443433
No 130
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.80 E-value=1.2 Score=41.58 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=109.2
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCcccc-CCCCc--CcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD-PSDPR--IYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~-~a~m~--~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+++.|+ +| .+..||..+..... +..+. .....+.+++... +. |++|+.+ ..|..||..+.
T Consensus 62 ~~~~l~~~~---dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~ 129 (337)
T 1gxr_A 62 PTRHVYTGG---KG-----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----STLSIWDLAAP 129 (337)
T ss_dssp SSSEEEEEC---BS-----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS----SEEEEEECCCC
T ss_pred CCcEEEEcC---CC-----eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC----CcEEEEECCCC
Confidence 455666665 22 45667665543211 11100 1122232355543 34 4446543 47889999884
Q ss_pred cc--ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 253 QI--SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 253 ~~--~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
++ ...+.. +......+.+.+ ++.++++|+.+ +.|..||.++++++.+..... ..+.+
T Consensus 130 ~~~~~~~~~~------~~~~i~~~~~~~-~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~--------~~i~~ 188 (337)
T 1gxr_A 130 TPRIKAELTS------SAPACYALAISP-DSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHT--------DGASC 188 (337)
T ss_dssp --EEEEEEEC------SSSCEEEEEECT-TSSEEEEEETT------SCEEEEETTTTEEEEEECCCS--------SCEEE
T ss_pred Ccceeeeccc------CCCceEEEEECC-CCCEEEEEeCC------CcEEEEeCCCCceeeeeeccc--------CceEE
Confidence 41 111100 000011222333 55566666633 469999999999777765441 11212
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeec
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSR 407 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~ 407 (472)
++... ++.++++|+.++....-|+++- ..+.. ..... .-..++. -+++.++++ .+.|.+|+-
T Consensus 189 ~~~~~-~~~~l~~~~~dg~i~~~d~~~~-----~~~~~----~~~~~-----~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 189 IDISN-DGTKLWTGGLDNTVRSWDLREG-----RQLQQ----HDFTS-----QIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTT-----EEEEE----EECSS-----CEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECC-CCCEEEEEecCCcEEEEECCCC-----ceEee----ecCCC-----ceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 22233 6667778888876544344432 22221 11111 0112222 234444443 488999986
Q ss_pred cccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCC
Q 012060 408 VREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 408 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
... ...+ +. ...+.|+.+++- |.. +++-.+...|.||+...
T Consensus 254 ~~~--------~~~~--~~-----~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 254 NKP--------DKYQ--LH-----LHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TSS--------CEEE--EC-----CCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred CCC--------CeEE--Ec-----CCccceeEEEECCCCCE-EEEecCCCcEEEEECCC
Confidence 422 1111 11 234579888886 444 45555567899999654
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.74 E-value=0.53 Score=44.41 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=110.8
Q ss_pred eeeeecCC--CCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeC---CCcccccccccccCCCcccc
Q 012060 197 LSSSRHVA--SAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDK---STLQISSEIGRQSGASSKNM 269 (472)
Q Consensus 197 sve~ydp~--t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp---~t~~~~~~~~~~~~~~W~~v 269 (472)
.+..|+.. +.++..+........-. +++.. ++ +||+++.. ...|..||. .+.+++..+.. . -
T Consensus 61 ~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~---~----~ 129 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYN---AGNVSVTRLEDGLPVGVVDVVEG---L----D 129 (343)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETT---TTEEEEEEEETTEEEEEEEEECC---C----T
T ss_pred eEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecC---CCeEEEEECCCCccccccccccC---C----C
Confidence 45555544 55555443322111111 25544 33 48885432 246888988 43332222211 0 0
Q ss_pred cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCC-Ceeee----EEcCCCCCCCCcccccccceeeeecCCeEEEEc
Q 012060 270 AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVW----ETNEPGSGRSARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 270 ~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW----~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
.+....+.+-...||+++. ..+.|..||..+ +++.- ....+. ...++ +++....+..||+.+
T Consensus 130 ~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPAL------KQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPR------HMVFHPNEQYAYCVN 196 (343)
T ss_dssp TBCCCEECTTSSEEEEEEG------GGTEEEEEEECTTSCEEEEEEEEEECST-TCCEE------EEEECTTSSEEEEEE
T ss_pred CceEEEECCCCCEEEEecC------CCCEEEEEEecCCCceeeecccccccCC-CCCcc------eEEECCCCCEEEEEe
Confidence 1233445555567887653 135799999988 65211 111111 11222 233455566788887
Q ss_pred ccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcc
Q 012060 345 SKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGL 420 (472)
Q Consensus 345 g~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~ 420 (472)
..++.....|++. ++.++..+..... +...-.+ ...-..++.. +..||++. .+.|.+|+-... +...
T Consensus 197 ~~~~~i~~~~~~~-~~g~~~~~~~~~~-~~~~~~~-~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~------~~~~ 267 (343)
T 1ri6_A 197 ELNSSVDVWELKD-PHGNIECVQTLDM-MPENFSD-TRWAADIHITPDGRHLYACDRTASLITVFSVSED------GSVL 267 (343)
T ss_dssp TTTTEEEEEESSC-TTSCCEEEEEEEC-SCTTCCS-CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SCCE
T ss_pred CCCCEEEEEEecC-CCCcEEEEeeccc-cCccccc-cCCccceEECCCCCEEEEEecCCCEEEEEEEcCC------CCce
Confidence 6665544333321 1233433221000 1111000 0011234444 34788765 488999986421 0000
Q ss_pred eeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCCCc
Q 012060 421 FRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNLSG 467 (472)
Q Consensus 421 ~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~~~ 467 (472)
+. +...+ .++.+..+++ -|.+||++-.+...|.||+-....|
T Consensus 268 -~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 268 -SK--EGFQP--TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp -EE--EEEEE--CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred -EE--eeeec--CCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence 00 11111 1223666666 4889999998889999996544444
No 132
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.73 E-value=0.14 Score=49.71 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=91.2
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.++.||+++|..|. ++|..+|+++++++=+..- ...-|+.++ +..+++||++-.+++....-|..+.
T Consensus 51 ~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l----~~~~FgeGi-----t~~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 51 RNGYFYESTGLNGR----SSIRKVDIESGKTLQQIEL----GKRYFGEGI-----SDWKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp ETTEEEEEEEETTE----EEEEEECTTTCCEEEEEEC----CTTCCEEEE-----EEETTEEEEEESSSSEEEEEETTTC
T ss_pred ECCEEEEECCCCCC----ceEEEEECCCCcEEEEEec----CCccceeEE-----EEeCCEEEEEEeeCCEEEEEECccC
Confidence 37899999987663 4899999999996655532 334577875 7789999999877766554455544
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+ .++. .....+ +-+++.-+++||++-| +.|.++++.-. ++.|+=-|+.... .-..+
T Consensus 118 ~-----~~~t----i~~~~e-----G~glt~dg~~L~~SdGs~~i~~iDp~T~--------~v~~~I~V~~~g~-~~~~l 174 (262)
T 3nol_A 118 R-----QVRS----FNYDGE-----GWGLTHNDQYLIMSDGTPVLRFLDPESL--------TPVRTITVTAHGE-ELPEL 174 (262)
T ss_dssp C-----EEEE----EECSSC-----CCCEEECSSCEEECCSSSEEEEECTTTC--------SEEEEEECEETTE-ECCCE
T ss_pred c-----EEEE----EECCCC-----ceEEecCCCEEEEECCCCeEEEEcCCCC--------eEEEEEEeccCCc-ccccc
Confidence 4 2222 222222 5677766778999965 55777776422 2223322321000 01124
Q ss_pred EEEeecCceEEEeeeccceeEEee
Q 012060 438 SRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 438 ~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
-.++.-+.+||+.=...+.|-|-+
T Consensus 175 NELe~~~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 175 NELEWVDGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EEEEEETTEEEEEETTSSEEEEEC
T ss_pred ceeEEECCEEEEEEccCCeEEEEE
Confidence 445655679999887666665555
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.71 E-value=0.56 Score=44.52 Aligned_cols=239 Identities=9% Similarity=-0.000 Sum_probs=114.6
Q ss_pred CC-eEEEEcCcCCCCceecceeeeecCCCCcc-c-cCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCc
Q 012060 178 WS-DVAAVGSDYSSGIHFYDLSSSRHVASAHW-T-DPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~-~lYavGG~~~~g~~~l~sve~ydp~t~~W-~-~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++ .+|+.+. .++ .+..+|+.+.+. . .+..-..++.. ++.. +.+||++... +....|..||+.+.
T Consensus 50 dg~~l~~~~~--~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~-~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 50 DCSNVVVTSD--FCQ-----TLVQIETQLEPPKVVAIQEGQSSMAD---VDITPDDQFAVTVTGL-NHPFNMQSYSFLKN 118 (331)
T ss_dssp SSCEEEEEES--TTC-----EEEEEECSSSSCEEEEEEECSSCCCC---EEECTTSSEEEECCCS-SSSCEEEEEETTTT
T ss_pred CCCEEEEEeC--CCC-----eEEEEECCCCceeEEecccCCCCccc---eEECCCCCEEEEecCC-CCcccEEEEECCCC
Confidence 44 4777765 222 567788876653 1 12222222221 3333 3358863111 11238999999996
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccce-EEEEcCCCCeeeeE----EcCCCCCCCCccccc
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGY-VRMWDPRSGEVVWE----TNEPGSGRSARFGDS 327 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~s-ve~yDp~~~~~vW~----~~~~~~~~~~R~~~~ 327 (472)
+++..+... ..+....+.+-+..||+++..+ +. |..||...+..+.. .... +..
T Consensus 119 ~~~~~~~~~-------~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~--------~~~ 177 (331)
T 3u4y_A 119 KFISTIPIP-------YDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQEFISG--------GTR 177 (331)
T ss_dssp EEEEEEECC-------TTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEEEECS--------SSS
T ss_pred CeEEEEECC-------CCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCccccC--------CCC
Confidence 654433220 1122333444455688876522 24 77787765543322 2222 111
Q ss_pred ccceeeeecCCeEEEEcccCCCcccccccccCCCCc-EEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeE
Q 012060 328 FADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPW-VYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSL 402 (472)
Q Consensus 328 ~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W-~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~ 402 (472)
...++....+..||+.+..++.....|++ +.+. ..+.. +.... .-..++.. +..||++.. +.|
T Consensus 178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~---~~~~~~~~~~----~~~~~-----~~~~~~~spdg~~l~v~~~~~~~i 245 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLIGNSIGILETQ---NPENITLLNA----VGTNN-----LPGTIVVSRDGSTVYVLTESTVDV 245 (331)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECS---STTSCEEEEE----EECSS-----CCCCEEECTTSSEEEEECSSEEEE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECC---CCcccceeee----ccCCC-----CCceEEECCCCCEEEEEEcCCCEE
Confidence 12233455556699888766554433333 2222 11221 11111 11233333 345888754 668
Q ss_pred EEeeccccccccccCCcceeecc-ccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 403 EVWSRVREGRNRSCSEGLFRRNF-VDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 403 ~v~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
.+|+....+. ..+ +.+ -..+ ++.. ......-..|+--|.+||++-.+.+.|.||+.+.
T Consensus 246 ~~~d~~~~~~-~~~-~~~-~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 246 FNFNQLSGTL-SFV-KSF-GHGLLIDPR-PLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEETTTTEE-EEE-EEE-ECCCCCCCG-GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EEEECCCCce-eee-ccc-ccccccCCC-CcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 8887532100 000 000 1110 0000 0001011256667889999999999999999654
No 134
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.66 E-value=0.36 Score=47.03 Aligned_cols=254 Identities=11% Similarity=0.143 Sum_probs=119.9
Q ss_pred cceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEE
Q 012060 171 ITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLI 247 (472)
Q Consensus 171 v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~Y 247 (472)
+.++++ -++...+.|+ .++ ++..||..+..+..+..+......+.+++.. ++.++| |+.+ .+|-.|
T Consensus 64 v~~~~~sp~g~~l~s~s--~D~-----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D----~~v~iw 132 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASAS--FDA-----TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD----KSVWVW 132 (345)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEE
T ss_pred EEEEEECCCCCEEEEEE--CCC-----cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC----CeEEEE
Confidence 334443 2567777887 555 3344555554443333332222333345554 355555 6554 468889
Q ss_pred eCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccc
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDS 327 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~ 327 (472)
|..+.+....+....+ +......+.|.+ ++.++++|+.+ +.|.+||.++++ |.......... ..
T Consensus 133 d~~~~~~~~~~~~~~~---h~~~v~~~~~~p-~~~~l~s~s~d------~~i~~w~~~~~~--~~~~~~~~~h~----~~ 196 (345)
T 3fm0_A 133 EVDEEDEYECVSVLNS---HTQDVKHVVWHP-SQELLASASYD------DTVKLYREEEDD--WVCCATLEGHE----ST 196 (345)
T ss_dssp EECTTSCEEEEEEECC---CCSCEEEEEECS-SSSCEEEEETT------SCEEEEEEETTE--EEEEEEECCCS----SC
T ss_pred ECCCCCCeEEEEEecC---cCCCeEEEEECC-CCCEEEEEeCC------CcEEEEEecCCC--EEEEEEecCCC----Cc
Confidence 9876321100000000 000011223333 45566666643 469999999998 65433211111 11
Q ss_pred ccceeeeecCCeEEEEcccCCCcccccccccC----------CCCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEE
Q 012060 328 FADVDVDVDELTLFKICSKSGDIAMADLRNLG----------EDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFV 396 (472)
Q Consensus 328 ~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e----------~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~ 396 (472)
+.+++... ++.+++.|+.|+....=|++.-+ ...|.++.. +...... .-..++ .-.+..++
T Consensus 197 v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~---~v~~v~~~~~~~~l~ 268 (345)
T 3fm0_A 197 VWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT----LSGFHSR---TIYDIAWCQLTGALA 268 (345)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE----ECSSCSS---CEEEEEECTTTCCEE
T ss_pred eEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE----ecCCCCC---cEEEEEEecCCCEEE
Confidence 22222233 56778888888765432221111 234555443 1111100 001111 11233333
Q ss_pred e--cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC--ceEEEeeeccceeEEeecCC
Q 012060 397 G--RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG--NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 397 ~--~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg--~r~f~~~~~~~~~~vw~~~~ 464 (472)
+ ..+.|.+|....... .....+. +..+......+.|..+++-- .+++++=.+-..|-+|+...
T Consensus 269 s~~~d~~i~vw~~~~~~~---~~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 269 TACGDDAIRVFQEDPNSD---PQQPTFS--LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEETTSCEEEEEECTTSC---TTSCCEE--EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEeCCCeEEEEEeCCCCC---cceeeEE--EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 3 448899997642200 0111110 11111112345799999864 46999999999999998654
No 135
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.57 E-value=1.3 Score=41.89 Aligned_cols=237 Identities=12% Similarity=0.138 Sum_probs=114.3
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC----Ce-EEEEecCCCCCceeEEEeCCCcc-
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP----TT-VFSSLVCPHKENSVLLIDKSTLQ- 253 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~----g~-IYAGg~~~~~l~sVE~YDp~t~~- 253 (472)
.+++.|+ .+. .-..+..||..+.+......... ...+.+++... +. |++|+.+ ..|-.||..+.+
T Consensus 32 ~l~~~~s--~~~--~d~~v~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~ 102 (357)
T 3i2n_A 32 KFVTMGN--FAR--GTGVIQLYEIQHGDLKLLREIEK-AKPIKCGTFGATSLQQRYLATGDFG----GNLHIWNLEAPEM 102 (357)
T ss_dssp EEEEEEC----C--CCEEEEEEEECSSSEEEEEEEEE-SSCEEEEECTTCCTTTCCEEEEETT----SCEEEECTTSCSS
T ss_pred eEEEecC--ccC--CCcEEEEEeCCCCcccceeeecc-cCcEEEEEEcCCCCCCceEEEecCC----CeEEEEeCCCCCc
Confidence 5666675 210 01245667766655433222111 12222355543 24 4446544 468899998854
Q ss_pred cccccccccCCCcccccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCCCe-eeeEEcCCCCCCCCccccc
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGE-VVWETNEPGSGRSARFGDS 327 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~-~vW~~~~~~~~~~~R~~~~ 327 (472)
++..+... -..+ ..+.+.+ -++.++++|+.+ +.|..||.++++ .+.+....- ....+.-.+
T Consensus 103 ~~~~~~~~----~~~v--~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~ 169 (357)
T 3i2n_A 103 PVYSVKGH----KEII--NAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQ-GENKRDCWT 169 (357)
T ss_dssp CSEEECCC----SSCE--EEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCT-TSCCCCEEE
T ss_pred cEEEEEec----ccce--EEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccC-CCCCCceEE
Confidence 33322211 0111 1222221 355566666643 469999999986 455554431 111111121
Q ss_pred ccceee---eecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE----CCEEEEec--
Q 012060 328 FADVDV---DVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY----KNQVFVGR-- 398 (472)
Q Consensus 328 ~~d~~v---~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~----~g~l~~~~-- 398 (472)
+ +. -.-++.++++|+.++....-|+++-+. ..... ... .-..++.. ++..++++
T Consensus 170 ~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~------~~~-----~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 170 V---AFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWETN------IKN-----GVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp E---EEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEEEE------CSS-----CEEEEEESCSSSSCCEEEEEES
T ss_pred E---EEEeccCCCCCEEEEEccCCeEEEEECccCce---eeecC------CCC-----ceEEEEcCCCCCCCCEEEEECC
Confidence 1 10 114677888888887655445443221 11111 111 11223332 34444433
Q ss_pred CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc--eEEEeeeccceeEEeecCC
Q 012060 399 GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN--RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 399 g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~~ 464 (472)
++.|.+|+-...+ ....+ .-. ......+.|..+++--+ .+|++-.+...|.||+...
T Consensus 233 dg~i~i~d~~~~~----~~~~~-~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 233 EGKFHVFDMRTQH----PTKGF-ASV----SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp TTEEEEEEEEEEE----TTTEE-EEE----EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCeEEEEeCcCCC----cccce-eee----ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 4889999864321 11111 100 00123557998888643 3888888888999999653
No 136
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.56 E-value=1.5 Score=40.76 Aligned_cols=165 Identities=12% Similarity=0.177 Sum_probs=81.3
Q ss_pred eeEEec-CCeEEEEEEeCCCccccceEEEEcCCCC---------eeeeEEcCCCCCCCCcccccccceeeeecC-CeEEE
Q 012060 274 LTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSG---------EVVWETNEPGSGRSARFGDSFADVDVDVDE-LTLFK 342 (472)
Q Consensus 274 ~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~---------~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~-~~iy~ 342 (472)
+.+.+. ++.++++|+.+ +.|..||.+++ +.+.+.... ...+.+++..... +.+++
T Consensus 63 ~~~~~~~d~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYD------KTVKLWEEDPDQEECSGRRWNKLCTLNDS--------KGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEECCGGGCSEEEEEETT------SCEEEEEECTTSCTTSSCSEEEEEEECCC--------SSCEEEEEECCGGGCSEEE
T ss_pred EEEcCCCCCCEEEEEcCC------CeEEEEecCCCcccccccCcceeeeeccc--------CCceeEEEEcCCCCCcEEE
Confidence 334443 47777777744 46999999887 323333322 1222222233321 67788
Q ss_pred EcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-----CCEEEEecCCeEEEeecccccccccc
Q 012060 343 ICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-----KNQVFVGRGGSLEVWSRVREGRNRSC 416 (472)
Q Consensus 343 vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-----~g~l~~~~g~~~~v~~~~~~~~~~~~ 416 (472)
+|+.++.+..-|+++-+ ...|..-.... .+.....+....-..++.. +..|.+...+..-+|.....
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~------ 201 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMK-VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD------ 201 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEE-SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT------
T ss_pred EecCCCcEEEecCCChHHhcccccccccc-ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC------
Confidence 88888876655666544 33343221100 0111100000011222221 34444444433334433211
Q ss_pred CCcceeeccccccccCCCCceEEEeecCc-----eEEEeeeccceeEEeecCC
Q 012060 417 SEGLFRRNFVDRVEDSGRGAISRIDAGGN-----RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 417 ~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-----r~f~~~~~~~~~~vw~~~~ 464 (472)
.+......+-+ ..+.|+.+++--+ +++++=.+...|.||+...
T Consensus 202 ~~~~~~~~~~~-----h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 202 GKLHVAAKLPG-----HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp SCEEEEEECCC-----CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CceeeeeecCC-----CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 11101121222 3457999988766 7888888888899998654
No 137
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.54 E-value=1.2 Score=42.34 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=97.4
Q ss_pred EEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 223 AIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 223 ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+++.. ++.+.| |+.+ .+|..||..+.+.+..+... -. +-....+. -++.++++|+. .+.|.
T Consensus 18 ~~~fsp~~~~l~s~~~d----g~v~lWd~~~~~~~~~~~~~----~~--~v~~~~~~-~~~~~l~s~s~------d~~i~ 80 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYS----GRVELWNYETQVEVRSIQVT----ET--PVRAGKFI-ARKNWIIVGSD------DFRIR 80 (304)
T ss_dssp EEEECSSSSEEEEEETT----SEEEEEETTTTEEEEEEECC----SS--CEEEEEEE-GGGTEEEEEET------TSEEE
T ss_pred EEEECCCCCEEEEEcCC----CcEEEEECCCCceeEEeecc----CC--cEEEEEEe-CCCCEEEEECC------CCEEE
Confidence 34444 344444 6544 47889999985533333220 00 01122233 34555566663 35799
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
+||.++++.+.++... ...+-+++... ++.+++.|+.|+....=|++. .|..... +....
T Consensus 81 vwd~~~~~~~~~~~~h--------~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~----~~~~~~~----~~~h~--- 140 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAH--------PDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN----NWALEQT----FEGHE--- 140 (304)
T ss_dssp EEETTTCCEEEEEECC--------SSCEEEEEECS-SSSEEEEEETTSCEEEEEGGG----TTEEEEE----ECCCC---
T ss_pred EEECCCCcEEEEEeCC--------CCcEEEEEEcC-CCCEEEEECCCCeEEEEECCC----Ccchhhh----hcccC---
Confidence 9999999987777654 12222333333 566778899887754334332 2333221 11111
Q ss_pred CCcCe-EEEEE--CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee---cCceEEEeee
Q 012060 381 NGENK-LIHCY--KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA---GGNRLFVSRE 452 (472)
Q Consensus 381 ~~~~~-~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~---gg~r~f~~~~ 452 (472)
..+ .++.. +++++++++ +.|-+|+--.. +..+.- . ......|..+.+ +..+++++=.
T Consensus 141 --~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~-------~~~~~~--~----~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 141 --HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-------TPNFTL--T----TGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp --SCEEEEEECTTCTTEEEEEETTSEEEEEETTCS-------SCSEEE--E----CCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred --CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-------Ccccee--c----cCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 122 22222 456666654 88999985311 111111 0 011223444443 3445677777
Q ss_pred ccceeEEeecC
Q 012060 453 DVEGIEVWESS 463 (472)
Q Consensus 453 ~~~~~~vw~~~ 463 (472)
+...|-||+..
T Consensus 206 ~D~~i~iWd~~ 216 (304)
T 2ynn_A 206 DDLTIKIWDYQ 216 (304)
T ss_dssp TTSEEEEEETT
T ss_pred CCCeEEEEeCC
Confidence 77889999854
No 138
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.53 E-value=1.4 Score=42.60 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=65.7
Q ss_pred cceeeccCCcEEEeee---CceEEeeccc---CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 133 TFTASSDDGSLWIAHG---GQISVYDWNL---SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 133 a~r~~~~~g~l~va~G---G~Ve~YDW~~---~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
++...|. +.++ +.| |.|..||... ......+.+-+.+.++++. ++.+++.|+ .+| ++..||..+
T Consensus 16 ~~~~s~~-g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~d~-----~v~vwd~~~ 86 (377)
T 3dwl_C 16 EHAFNSQ-RTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS--QDR-----NAYVYEKRP 86 (377)
T ss_dssp CCEECSS-SSEE-ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE--TTS-----SEEEC----
T ss_pred EEEECCC-CCEE-EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe--CCC-----eEEEEEcCC
Confidence 3444444 4544 444 3477777321 1111222233334445543 456667776 454 456677666
Q ss_pred Cc-cccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCccc---ccccccccCCCcccccccceeEEec
Q 012060 206 AH-WTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTLQI---SSEIGRQSGASSKNMAVGKLTWIPA 279 (472)
Q Consensus 206 ~~-W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~~~---~~~~~~~~~~~W~~v~~m~~~~~~~ 279 (472)
.+ |.....+......+.+++.. ++. |++|+.+ ..|-.||..+.+. ...+.. . +......+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~---~--h~~~v~~~~~~~- 156 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA----RVISVCYFEQENDWWVSKHLKR---P--LRSTILSLDWHP- 156 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS----SCEEECCC-----CCCCEEECS---S--CCSCEEEEEECT-
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecC----CeEEEEEECCcccceeeeEeec---c--cCCCeEEEEEcC-
Confidence 65 54443333333333335544 344 4446544 3678888887431 111111 0 011112233333
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
++.++++|+.+ +.|..||.+++
T Consensus 157 ~~~~l~~~~~d------~~i~iwd~~~~ 178 (377)
T 3dwl_C 157 NNVLLAAGCAD------RKAYVLSAYVR 178 (377)
T ss_dssp TSSEEEEEESS------SCEEEEEECCS
T ss_pred CCCEEEEEeCC------CEEEEEEEEec
Confidence 56666777644 46899998644
No 139
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.79 Score=44.22 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=75.4
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec-CCeEEEEcccCCCccccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD-ELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~-~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
++.++++|+.+ ++|.+||.+++. |+.......... .+-.++.... ++.+.+.|+.|+....-|++.-
T Consensus 164 ~~~~l~s~s~D------~~i~iW~~~~~~--~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 164 SEALLASSSYD------DTVRIWKDYDDD--WECVAVLNGHEG----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSSEEEEEETT------SCEEEEEEETTE--EEEEEEECCCSS----CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCEEEEEcCC------CeEEEEECCCCC--eeEEEEccCCCC----cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 56667777744 469999999886 554433111111 1111112222 1456778888876554344432
Q ss_pred C---CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCC
Q 012060 359 G---EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433 (472)
Q Consensus 359 e---~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 433 (472)
+ ..+|.+... +...-.+ .=..++...+.+++++ ++.|.+|....- ..+.+...+.++ .
T Consensus 232 ~~~~~~~~~~~~~----~~~~h~~---~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~h----~ 294 (330)
T 2hes_X 232 DEDDQQEWVCEAI----LPDVHKR---QVYNVAWGFNGLIASVGADGVLAVYEEVDG------EWKVFAKRALCH----G 294 (330)
T ss_dssp CTTSCEEEEEEEE----CCSCCSS---CEEEEEECTTSCEEEEETTSCEEEEEEETT------EEEEEEEESCTT----T
T ss_pred CccccceeEEeee----ccccccc---ceEEEEEcCCCEEEEEeCCCEEEEEEcCCC------ceEEEecccccc----c
Confidence 2 334666554 2111110 1112222233344443 378999985311 001111111111 1
Q ss_pred CCceEEEeec---CceEEEeeeccceeEEeecCC
Q 012060 434 RGAISRIDAG---GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 434 ~~~i~~~~~g---g~r~f~~~~~~~~~~vw~~~~ 464 (472)
...|..+++- +.+++++=.+-.-|-||+...
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2268887763 345666666667899998654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.46 E-value=1.7 Score=40.78 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=95.0
Q ss_pred CeEEEEecCCCCCceeEEEeCC--Ccc--cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 229 TTVFSSLVCPHKENSVLLIDKS--TLQ--ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 229 g~IYAGg~~~~~l~sVE~YDp~--t~~--~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
.+||++..+. ..|..||.. +.+ ++..+.. .. .+..+.+.+-+..||+++.. .+.|..||.
T Consensus 50 ~~l~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~ 113 (343)
T 1ri6_A 50 RYLYVGVRPE---FRVLAYRIAPDDGALTFAAESAL---PG----SLTHISTDHQGQFVFVGSYN------AGNVSVTRL 113 (343)
T ss_dssp SEEEEEETTT---TEEEEEEECTTTCCEEEEEEEEC---SS----CCSEEEECTTSSEEEEEETT------TTEEEEEEE
T ss_pred CEEEEeecCC---CeEEEEEecCCCCceeecccccc---CC----CCcEEEEcCCCCEEEEEecC------CCeEEEEEC
Confidence 3588854431 578888877 322 1111111 00 23334455555567776531 347999998
Q ss_pred C---CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEee--cCCCCcccCCCC
Q 012060 305 R---SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYME--DKNPSMISSSGN 379 (472)
Q Consensus 305 ~---~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~--~~~~~m~~~~~~ 379 (472)
. +.+.+-..... ....+++....+..||+.+..++.+..-|++. ..+...+. . ..... +
T Consensus 114 ~~~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~----~~~~~-~ 177 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL---------DGCHSANISPDNRTLWVPALKQDRICLFTVSD--DGHLVAQDPAE----VTTVE-G 177 (343)
T ss_dssp ETTEEEEEEEEECCC---------TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT--TSCEEEEEEEE----EECST-T
T ss_pred CCCccccccccccCC---------CCceEEEECCCCCEEEEecCCCCEEEEEEecC--CCceeeecccc----cccCC-C
Confidence 4 33322222211 11223445665667887775555443323321 24444332 1 11111 1
Q ss_pred CCCcCe-EEEEE-CC-EEEEec--CCeEEEeeccccccccccCCcceeecccccccc--CCCCceEEEeec--CceEEEe
Q 012060 380 NNGENK-LIHCY-KN-QVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVED--SGRGAISRIDAG--GNRLFVS 450 (472)
Q Consensus 380 ~~~~~~-~~~~~-~g-~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~i~~~~~g--g~r~f~~ 450 (472)
..+ .++.. +| .||++. .+.|.+|.-... +..+.....+...+. .....+..+++- |.+||++
T Consensus 178 ---~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 178 ---AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP------HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp ---CCEEEEEECTTSSEEEEEETTTTEEEEEESSCT------TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ---CCcceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence 122 23332 33 588774 478999986421 111100111111111 112345556665 7799999
Q ss_pred eeccceeEEeecCC
Q 012060 451 REDVEGIEVWESSN 464 (472)
Q Consensus 451 ~~~~~~~~vw~~~~ 464 (472)
-.....|.||+...
T Consensus 249 ~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 249 DRTASLITVFSVSE 262 (343)
T ss_dssp ETTTTEEEEEEECT
T ss_pred ecCCCEEEEEEEcC
Confidence 87788899999764
No 141
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.42 E-value=1.2 Score=43.12 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=20.5
Q ss_pred CCceEEEeec--CceEEEeeeccceeEEeecCC
Q 012060 434 RGAISRIDAG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 434 ~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
.+.|..+++- |.. +++=.....|-||+...
T Consensus 291 ~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 291 SSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SSCEEEEEECSSSSE-EEEEETTSEEEEEETTT
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCeEEEEEcCC
Confidence 4578888885 544 45555566799998643
No 142
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.36 E-value=1.2 Score=41.36 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=22.5
Q ss_pred CCceEEEeecC-ceEEEeeeccceeEEeecCCC
Q 012060 434 RGAISRIDAGG-NRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 434 ~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~~ 465 (472)
.+.|+.+++-- ++++++=.+...|-||+....
T Consensus 306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 45799999852 246666666678999997643
No 143
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.36 E-value=1.4 Score=42.10 Aligned_cols=236 Identities=13% Similarity=0.153 Sum_probs=111.9
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++...+.|+ .++ ++..||..+.+...+..+......+.+++... +.+.| |+.+ .+|-.||+.+.+
T Consensus 24 ~g~~lasgs--~D~-----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D----~~v~iWd~~~~~ 92 (316)
T 3bg1_A 24 YGTRLATCS--SDR-----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD----RKVIIWREENGT 92 (316)
T ss_dssp GGCEEEEEE--TTT-----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT----SCEEEECCSSSC
T ss_pred CCCEEEEEe--CCC-----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC----CEEEEEECCCCc
Confidence 567777777 454 44555554443222222222223333455532 45555 6554 468899998732
Q ss_pred --cccccccccCCCcccccccceeEEec-CCeEEEEEEeCCCccccceEEEEcCCCC-eeeeEEcCCCCCCCCccccccc
Q 012060 254 --ISSEIGRQSGASSKNMAVGKLTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSG-EVVWETNEPGSGRSARFGDSFA 329 (472)
Q Consensus 254 --~~~~~~~~~~~~W~~v~~m~~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~-~~vW~~~~~~~~~~~R~~~~~~ 329 (472)
++..+.. +..+...+.+.+. .+.++++|+.+ ++|..||.+++ . |........... ...+
T Consensus 93 ~~~~~~~~~------h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~--~~~~~~~~~h~~-~v~~-- 155 (316)
T 3bg1_A 93 WEKSHEHAG------HDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQ--WEVKKINNAHTI-GCNA-- 155 (316)
T ss_dssp CCEEEEECC------CSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSC--EEECCBTTSSSS-CBCC--
T ss_pred ceEEEEccC------CCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCC--cceeeeeccccC-Ccce--
Confidence 1111100 0011123344443 36777777644 46899998876 4 654322100000 0000
Q ss_pred ceeeee----------------cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEEE-C
Q 012060 330 DVDVDV----------------DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHCY-K 391 (472)
Q Consensus 330 d~~v~~----------------~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~~-~ 391 (472)
++-.. ..+.+++.|+.|+....=|++. ..+|..+.. +..... .+ .++.. +
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~--~~~~~~~~~----l~~h~~-----~V~~v~~sp~ 223 (316)
T 3bg1_A 156 -VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE--DGQWKEEQK----LEAHSD-----WVRDVAWAPS 223 (316)
T ss_dssp -CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT--TSCEEEEEC----CBCCSS-----CEEEEECCCC
T ss_pred -EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC--CCccceeee----cccCCC-----ceEEEEecCC
Confidence 00011 0146788888887654323321 345766654 322221 11 12211 1
Q ss_pred ----CEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecC
Q 012060 392 ----NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 392 ----g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~ 463 (472)
+++++++ .+.|-+|+-.... .......++.. ..+.|..+++-- .+++++=.+...|-+|+..
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~-~~~~~~~~~~~---------~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDAS-SNTWSPKLLHK---------FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTT-CCCCBCCEEEE---------CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEcCCCeEEEEEccCcc-ccchhhhhhhc---------CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 2555554 4889999754210 00001111111 245788888752 2344555556678999865
No 144
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.35 E-value=1 Score=43.75 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=95.2
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC--CeEEE-EecCCCCCceeEEEeCCCccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP--TTVFS-SLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
.+++.|+ .+| ++..||..+.+.............+.+++... +.+++ ++.+ .+|-.||..+.+ +.
T Consensus 87 ~~l~s~~--~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~-~~ 154 (383)
T 3ei3_B 87 TTVAVGS--KGG-----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR----GATTLRDFSGSV-IQ 154 (383)
T ss_dssp TEEEEEE--BTS-----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT----TEEEEEETTSCE-EE
T ss_pred CEEEEEc--CCC-----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC----CEEEEEECCCCc-eE
Confidence 4677776 444 45667777666554433222233443466664 34444 6443 478899988732 11
Q ss_pred ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec
Q 012060 257 EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD 336 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~ 336 (472)
.+... ... ......+.+.+ ++.++++|+. .+.|..||.+ ++.+.+.... ...+.+++....
T Consensus 155 ~~~~~--~~~-~~~v~~~~~~~-~~~~l~~~~~------d~~i~i~d~~-~~~~~~~~~h--------~~~v~~~~~~~~ 215 (383)
T 3ei3_B 155 VFAKT--DSW-DYWYCCVDVSV-SRQMLATGDS------TGRLLLLGLD-GHEIFKEKLH--------KAKVTHAEFNPR 215 (383)
T ss_dssp EEECC--CCS-SCCEEEEEEET-TTTEEEEEET------TSEEEEEETT-SCEEEEEECS--------SSCEEEEEECSS
T ss_pred EEecc--CCC-CCCeEEEEECC-CCCEEEEECC------CCCEEEEECC-CCEEEEeccC--------CCcEEEEEECCC
Confidence 11110 000 01112333444 4555666663 3579999994 5566766654 122323334443
Q ss_pred CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeEEEeecc
Q 012060 337 ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 337 ~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~ 408 (472)
+..+++.|+.++....-|+++.+. ....+.. ..... .-..++.. +++.+++++ +.|.+|+-.
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~----~~~~~-----~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKD-KNSYIAE----MPHEK-----PVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCS-TTCEEEE----EECSS-----CEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCc-ccceEEE----ecCCC-----ceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 443888999888766556665331 1122221 10111 11222322 455555544 899999854
No 145
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.27 E-value=2 Score=40.53 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred cccccceeeeeC----CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCC
Q 012060 167 HLDNITSIRHVW----SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHK 240 (472)
Q Consensus 167 ~~~~v~~v~~l~----~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~ 240 (472)
+-+.+.++++-. +.+.+.|+ .+| .+..||..+........+......+.+++.. ++. |++|+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~--~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--- 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGS--WAN-----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD--- 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEE--TTS-----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---
T ss_pred CCCceEEEEEcCCCCCceEEEEEC--CCC-----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC---
Confidence 334455555543 36777777 455 3455665542222212222222333335554 344 4446544
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEE-ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..|-.||..+.+++...+. -.. ...+.|. .-++.++++|+. .+.|..||.++++++.+...+
T Consensus 108 -g~v~iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 108 -KTAKMWDLSSNQAIQIAQH-----DAP--VKTIHWIKAPNYSCVMTGSW------DKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp -SEEEEEETTTTEEEEEEEC-----SSC--EEEEEEEECSSCEEEEEEET------TSEEEEECSSCSSCSEEEECS
T ss_pred -CcEEEEEcCCCCceeeccc-----cCc--eEEEEEEeCCCCCEEEEccC------CCcEEEEECCCCcEEEEEecC
Confidence 4788999998664433222 111 1233443 245666677663 347999999999977777755
No 146
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.22 E-value=1.1 Score=44.23 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=76.4
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccc--ccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDS--FADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~--~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
+..+..+++|+. .++|..||.++++.+-...... . .+|. +..++....++.+++.|+.|+....=|+
T Consensus 167 ~~~~~~l~s~s~------D~~i~~wd~~~~~~~~~~~~~~--~---~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 167 PDQETRLITGSG------DQTCVLWDVTTGQRISIFGSEF--P---SGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp SSSSSCEEEECT------TSCEEEECTTTCCEEEEECCCS--S---SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEECC------CCcEEEEEcCCCcEEEEeeccc--C---CCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 333444555553 3479999999998665553321 0 1221 1111222347789999999987654455
Q ss_pred cccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccC
Q 012060 356 RNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDS 432 (472)
Q Consensus 356 ~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 432 (472)
+.... .-..+ ..... ... .++. -+++.+++++ +.|.+|+--... .-..+... ....+.
T Consensus 236 ~~~~~-~~~~~-------~~h~~---~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~~--~~~~~~ 296 (380)
T 3iz6_a 236 RITSR-AVRTY-------HGHEG---DIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGH-----QLQVYNRE--PDRNDN 296 (380)
T ss_dssp TTTCC-CCEEE-------CCCSS---CCC-EEEECTTSSEEEEECSSSCEEEEETTTTE-----EEEEECCC--CSSSCC
T ss_pred CCCCc-ceEEE-------CCcCC---CeE-EEEEecCCCeEEEEcCCCeEEEEECCCCc-----EEEEeccc--cccccc
Confidence 43211 01111 11111 011 2222 2567777765 789999863210 00011110 001112
Q ss_pred CCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 433 GRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 433 ~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
..+.|+.++| .|..|+..-. ...|-||+..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~ 328 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTL 328 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECT-TSCEEEEETT
T ss_pred ccCceEEEEECCCCCEEEEEEC-CCCEEEEECC
Confidence 2334666555 5666666544 5678999853
No 147
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.12 E-value=2.7 Score=44.23 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=108.4
Q ss_pred EEEe--CCeEEEEecCCCCCceeEEEeCCCccccc--ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 224 IADS--PTTVFSSLVCPHKENSVLLIDKSTLQISS--EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 224 va~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~--~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
++.. +..+|+.... ...|-.||..+.+.+. .|.. ..| +-...+.+-+..+|+++. ..++|
T Consensus 285 i~~s~~~~~~~vs~~~---~g~i~vvd~~~~~~l~~~~i~~---~~~----~~~~~~spdg~~l~va~~------~~~~v 348 (543)
T 1nir_A 285 IIASHEHPEFIVNVKE---TGKVLLVNYKDIDNLTVTSIGA---APF----LHDGGWDSSHRYFMTAAN------NSNKV 348 (543)
T ss_dssp EEECSSSSEEEEEETT---TTEEEEEECTTSSSCEEEEEEC---CSS----CCCEEECTTSCEEEEEEG------GGTEE
T ss_pred EEECCCCCEEEEEECC---CCeEEEEEecCCCcceeEEecc---CcC----ccCceECCCCCEEEEEec------CCCeE
Confidence 4444 3457774322 4578889988743111 1111 001 111223334455777643 24689
Q ss_pred EEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCCCcccccccccC--CCCcEEeecCCCCcccC
Q 012060 300 RMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSGDIAMADLRNLG--EDPWVYMEDKNPSMISS 376 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g~~~~~dl~s~e--~d~W~~~~~~~~~m~~~ 376 (472)
..||..+++++.+.... .+..+..+..+ +.-.++.+|+.+. .++.....|+.+.. ...|..+.. +...
T Consensus 349 ~v~D~~tg~l~~~i~~g-~~ph~g~g~~~----~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~----l~~~ 419 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVG-KTPHPGRGANF----VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE----LQGQ 419 (543)
T ss_dssp EEEETTTTEEEEEEECS-SSBCCTTCEEE----EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE----EECS
T ss_pred EEEECCCCeEEEeeccC-CCCCCCCCccc----CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE----EEcC
Confidence 99999999977665422 11122122222 1233588998875 33433322222211 122988876 4443
Q ss_pred CCCCCCcCeEEEEECCEEEEec--------CCeEEEeeccccccccccCCcceeeccccccc--cCCCCceEEEee--cC
Q 012060 377 SGNNNGENKLIHCYKNQVFVGR--------GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVE--DSGRGAISRIDA--GG 444 (472)
Q Consensus 377 ~~~~~~~~~~~~~~~g~l~~~~--------g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~i~~~~~--gg 444 (472)
..+ ....+.+--+.+||+.. .++|.||.--.. +..++.--++... ...+..+.+++| -|
T Consensus 420 g~~--~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 420 GGG--SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp CSC--CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-------TSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred CCC--ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC-------CCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 321 12233333356899975 469999987533 1122221121100 012457888888 59
Q ss_pred ceEEEeee----ccceeEEeecCC
Q 012060 445 NRLFVSRE----DVEGIEVWESSN 464 (472)
Q Consensus 445 ~r~f~~~~----~~~~~~vw~~~~ 464 (472)
+.|+++-. +.+-|-||+...
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTT
T ss_pred CEEEEEeecCCCCCCeEEEEECCC
Confidence 99999854 578899998654
No 148
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.10 E-value=0.56 Score=45.34 Aligned_cols=147 Identities=11% Similarity=0.077 Sum_probs=88.9
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.||++.|..+ .++|..+|+.+++++=+..-+ ..-++.++ +..+++||+..-.++.....|..+
T Consensus 31 dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~----~~~fgeGi-----~~~g~~lyv~t~~~~~v~viD~~t-- 95 (266)
T 2iwa_A 31 NDTLFESTGLYG----RSSVRQVALQTGKVENIHKMD----DSYFGEGL-----TLLNEKLYQVVWLKNIGFIYDRRT-- 95 (266)
T ss_dssp TTEEEEEECSTT----TCEEEEEETTTCCEEEEEECC----TTCCEEEE-----EEETTEEEEEETTCSEEEEEETTT--
T ss_pred CCeEEEECCCCC----CCEEEEEECCCCCEEEEEecC----CCcceEEE-----EEeCCEEEEEEecCCEEEEEECCC--
Confidence 379999877433 358999999999977655422 23456675 667999999987776654434433
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCceE
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAIS 438 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~ 438 (472)
...++. ++.+ .+ .+.+++-=+++||++-| +.|.|+...- -++.|+=-|+..+..- ..+-
T Consensus 96 ---~~v~~~----i~~g-~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t--------~~v~~~I~Vg~~~~p~-~~~n 155 (266)
T 2iwa_A 96 ---LSNIKN----FTHQ-MK---DGWGLATDGKILYGSDGTSILYEIDPHT--------FKLIKKHNVKYNGHRV-IRLN 155 (266)
T ss_dssp ---TEEEEE----EECC-SS---SCCEEEECSSSEEEECSSSEEEEECTTT--------CCEEEEEECEETTEEC-CCEE
T ss_pred ---CcEEEE----EECC-CC---CeEEEEECCCEEEEECCCCeEEEEECCC--------CcEEEEEEECCCCccc-ccce
Confidence 334443 2222 11 35667766788999965 6677776632 2223443344311111 1244
Q ss_pred EEeecCceEEEeeeccceeEEee
Q 012060 439 RIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 439 ~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
.+++.+.+||++....+-|-|=+
T Consensus 156 ele~~dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 156 ELEYINGEVWANIWQTDCIARIS 178 (266)
T ss_dssp EEEEETTEEEEEETTSSEEEEEE
T ss_pred eEEEECCEEEEecCCCCeEEEEE
Confidence 55655669999987666555544
No 149
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.10 E-value=0.88 Score=44.18 Aligned_cols=245 Identities=13% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCC-cCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcc-
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDP-RIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQ- 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m-~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~- 253 (472)
++.+.|.|| .++ ++..||..+.+|.....+ ......+.+++.. ++.+.| |+.+ .+|-.||..+.+
T Consensus 27 ~g~~las~~--~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D----~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 27 AGTLLASCG--GDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD----ATTCIWKKNQDDF 95 (345)
T ss_dssp TSSCEEEEE--TTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT----SCEEEEEECCC-E
T ss_pred CCCEEEEEc--CCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC----CcEEEEEccCCCe
Confidence 566677777 454 345566655555422111 1112223335554 345555 6554 367788877632
Q ss_pred -cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 254 -ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 254 -~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
.+..+.. +.-+-..+.|.+ ++.++++|+.+ ++|..||.+++.. ++........ ...+..++
T Consensus 96 ~~~~~~~~------h~~~v~~v~~sp-~~~~l~s~s~D------~~v~iwd~~~~~~-~~~~~~~~~h----~~~v~~~~ 157 (345)
T 3fm0_A 96 ECVTTLEG------HENEVKSVAWAP-SGNLLATCSRD------KSVWVWEVDEEDE-YECVSVLNSH----TQDVKHVV 157 (345)
T ss_dssp EEEEEECC------CSSCEEEEEECT-TSSEEEEEETT------SCEEEEEECTTSC-EEEEEEECCC----CSCEEEEE
T ss_pred EEEEEccC------CCCCceEEEEeC-CCCEEEEEECC------CeEEEEECCCCCC-eEEEEEecCc----CCCeEEEE
Confidence 1111100 000112233433 56667777644 4699999887631 2111110000 11111111
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccc
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVR 409 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~ 409 (472)
... ++.+++.|+.++....-| .++++|.++.. +..... .=..++. -+|+.+++++ +.|.+|....
T Consensus 158 ~~p-~~~~l~s~s~d~~i~~w~---~~~~~~~~~~~----~~~h~~----~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 158 WHP-SQELLASASYDDTVKLYR---EEEDDWVCCAT----LEGHES----TVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ECS-SSSCEEEEETTSCEEEEE---EETTEEEEEEE----ECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCcEEEEE---ecCCCEEEEEE----ecCCCC----ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 222 567788898887654322 23566776654 222221 1112222 2466666644 7899997532
Q ss_pred cccccccCC-cc-eeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecC
Q 012060 410 EGRNRSCSE-GL-FRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 410 ~~~~~~~~~-~~-~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~ 463 (472)
......+.. .. .....+-.........|.++++-- +.++++=.....|.||+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 210100000 00 000001111111334687777632 2345555566778999643
No 150
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.07 E-value=2.2 Score=39.68 Aligned_cols=231 Identities=6% Similarity=0.013 Sum_probs=111.4
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc---CcccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR---IYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~---~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+|+... .+ ..+..||+....-....... ..-....++++ -++.||++... ....|.+||+..
T Consensus 40 ~g~l~v~~~--~~-----~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~--~~~~i~~~d~~g- 109 (286)
T 1q7f_A 40 QNDIIVADT--NN-----HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--PTHQIQIYNQYG- 109 (286)
T ss_dssp TCCEEEEEG--GG-----TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--GGCEEEEECTTS-
T ss_pred CCCEEEEEC--CC-----CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC--CCCEEEEECCCC-
Confidence 578888764 22 24566776643322221100 00011123666 36789994321 134788999654
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
+.+..++.. ....|..+.. .-+|.||++.. ..+.|.+||+... .+++...+.....++ + ++
T Consensus 110 ~~~~~~~~~-----~~~~~~~i~~-~~~g~l~v~~~------~~~~i~~~~~~g~-~~~~~~~~~~~~~p~---~---i~ 170 (286)
T 1q7f_A 110 QFVRKFGAT-----ILQHPRGVTV-DNKGRIIVVEC------KVMRVIIFDQNGN-VLHKFGCSKHLEFPN---G---VV 170 (286)
T ss_dssp CEEEEECTT-----TCSCEEEEEE-CTTSCEEEEET------TTTEEEEECTTSC-EEEEEECTTTCSSEE---E---EE
T ss_pred cEEEEecCc-----cCCCceEEEE-eCCCCEEEEEC------CCCEEEEEcCCCC-EEEEeCCCCccCCcE---E---EE
Confidence 222222210 0001111111 24678998753 2357999998644 455554321112221 2 22
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEecC--C-eEEEeecc
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGRG--G-SLEVWSRV 408 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~g--~-~~~v~~~~ 408 (472)
+.. ++.||+....++.+...|. +...-..+.. ...-. .-.+|++- +|+||++.. + .|.+|+.-
T Consensus 171 ~~~-~g~l~v~~~~~~~i~~~~~---~g~~~~~~~~-----~g~~~----~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 171 VND-KQEIFISDNRAHCVKVFNY---EGQYLRQIGG-----EGITN----YPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp ECS-SSEEEEEEGGGTEEEEEET---TCCEEEEESC-----TTTSC----SEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred ECC-CCCEEEEECCCCEEEEEcC---CCCEEEEEcc-----CCccC----CCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 233 6789988765543332121 1111112221 00000 12345543 679999863 3 89999852
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecCC
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~ 464 (472)
. +..+ .+-.. .....+..+++.. .+|||+ ...+.|.||+...
T Consensus 238 g---------~~~~-~~~~~---~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 238 G---------QLIS-ALESK---VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp S---------CEEE-EEEES---SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred C---------CEEE-EEccc---CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 1 1112 12111 1233467777753 379999 5567899998643
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.07 E-value=0.61 Score=44.81 Aligned_cols=255 Identities=9% Similarity=0.092 Sum_probs=117.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCC---c
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKST---L 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t---~ 252 (472)
++.||+++. ..+ -..+..||..+.++..+...........+++.. ++ +||++.+. -.+|..||... .
T Consensus 50 dg~l~~~~~--~~~---~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~---~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 50 KDCLYSVDK--EDD---EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH---KGTAEVMKIAADGAL 121 (347)
T ss_dssp TCEEEEEEE--ETT---EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT---TTEEEEEEECTTSCE
T ss_pred CCeEEEEEe--cCC---CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC---CCEEEEEEeCCCCCe
Confidence 677888764 111 134566666555554443311111111135544 33 58885332 34788898863 2
Q ss_pred cccccccccc-CC--CcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC-CCeeeeEEc----CCCCCCCCcc
Q 012060 253 QISSEIGRQS-GA--SSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR-SGEVVWETN----EPGSGRSARF 324 (472)
Q Consensus 253 ~~~~~~~~~~-~~--~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~-~~~~vW~~~----~~~~~~~~R~ 324 (472)
+++..+.... +. ......+....+. -+|.||+++. ..+.|..||.. +++ .... .+. ...++
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~------~~~~v~~~~~~~~g~--~~~~~~~~~~~-g~~p~- 190 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDL------GSDKVYVYNVSDAGQ--LSEQSVLTMEA-GFGPR- 190 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEET------TTTEEEEEEECTTSC--EEEEEEEECCT-TCCEE-
T ss_pred eecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeC------CCCEEEEEEECCCCc--EEEeeeEEcCC-CCCCc-
Confidence 2222111100 00 0000001112233 3555887643 13479999998 555 2221 110 11222
Q ss_pred cccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CC-EEEEec--CC
Q 012060 325 GDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KN-QVFVGR--GG 400 (472)
Q Consensus 325 ~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g-~l~~~~--g~ 400 (472)
.++..-.+..||+.+..++.....|+.. +++++..+..... ....-.+. ..-..++.- +| .||++. .+
T Consensus 191 -----~~~~spdg~~l~v~~~~~~~v~v~~~~~-~~g~~~~~~~~~~-~~~~~~~~-~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 191 -----HLVFSPDGQYAFLAGELSSQIASLKYDT-QTGAFTQLGIVKT-IPADYTAH-NGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp -----EEEECTTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEES-SCTTCCSC-CEEEEEEECTTSCEEEEEEETTT
T ss_pred -----eEEECCCCCEEEEEeCCCCEEEEEEecC-CCCceEEeeeeee-cCCCCCCC-CcceeEEECCCCCEEEEEeCCCC
Confidence 2334565556998876555433222221 1334443332100 01100000 011223322 34 588864 47
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCCCCcceE
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSNLSGVVC 470 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~~~~~~ 470 (472)
.|.||.-... + . ++. +...+ ..+..+..+++. |.+||++-.+.+.|.||+-....|.+.
T Consensus 263 ~v~v~~~~~~----g---~-~~~--~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 263 TLAVFAVTAD----G---H-LTL--IQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECGG----G---C-EEE--EEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEEECCC----C---c-EEE--eEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8999985311 0 0 011 11111 123346666664 778999999989999997666666553
No 152
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.95 E-value=0.58 Score=45.40 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=89.9
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.++.||++.|..| .|..+|+++++++-+. -+ ..-|+.++ +..+++||++-.+++....-|..+.
T Consensus 63 ~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~----~~~FgeGi-----t~~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 63 HQGHFFESTGHQG------TLRQLSLESAQPVWME-RL----GNIFAEGL-----ASDGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp ETTEEEEEETTTT------EEEECCSSCSSCSEEE-EC----TTCCEEEE-----EECSSCEEEEESSSCEEEEEETTTT
T ss_pred ECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CC----CCcceeEE-----EEeCCEEEEEEccCCEEEEEECCcC
Confidence 4789999887433 4999999999987776 22 24467775 7889999999877766554455444
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+ .++. ..... .+-+++--+++||++-| +.|.++++.-. ++.|+=-|+...- .-..+
T Consensus 127 ~-----~~~t----i~~~~-----eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~--------~v~~~I~V~~~g~-~v~~l 183 (268)
T 3nok_A 127 Q-----RERT----TRYSG-----EGWGLCYWNGKLVRSDGGTMLTFHEPDGF--------ALVGAVQVKLRGQ-PVELI 183 (268)
T ss_dssp E-----EEEE----EECSS-----CCCCEEEETTEEEEECSSSEEEEECTTTC--------CEEEEEECEETTE-ECCCE
T ss_pred c-----EEEE----EeCCC-----ceeEEecCCCEEEEECCCCEEEEEcCCCC--------eEEEEEEeCCCCc-ccccc
Confidence 3 3332 22222 25678888899999964 77777776422 2223333322100 11134
Q ss_pred EEEeecCceEEEeeeccceeEEee
Q 012060 438 SRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 438 ~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
..++.-+.+||+.=...+-|-|=+
T Consensus 184 NeLe~~dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 184 NELECANGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EEEEEETTEEEEEETTCSEEEEEC
T ss_pred cccEEeCCEEEEEECCCCeEEEEe
Confidence 455555669999876666555444
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.93 E-value=1.6 Score=41.13 Aligned_cols=121 Identities=10% Similarity=-0.057 Sum_probs=60.6
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
-++.+|+.++ .+ +++..+|+.+.+....-+......-. +++.. ++ .+|+.... ...|-+||+.+.++
T Consensus 9 ~~~~~~v~~~--~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~---~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 9 AGHEYMIVTN--YP-----NNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNH---YGDIYGIDLDTCKN 77 (349)
T ss_dssp TTCEEEEEEE--TT-----TEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETT---TTEEEEEETTTTEE
T ss_pred CCCEEEEEeC--CC-----CeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCC---CCcEEEEeCCCCcE
Confidence 4677888876 33 36778888776644322222100111 25544 34 58884322 35789999998664
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEe----CCCcc-ccceEEEEcCCCCe
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA----WGAFG-YSGYVRMWDPRSGE 308 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~----~g~~~-~~~sve~yDp~~~~ 308 (472)
+..+.......=....+....+.+-+..||++... ....+ ..+.|..||+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 43332200000000112334444445567775521 00000 12589999998854
No 154
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.91 E-value=0.59 Score=45.26 Aligned_cols=168 Identities=11% Similarity=0.055 Sum_probs=85.1
Q ss_pred CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD 226 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~ 226 (472)
|.|..||... ....+...+-+.+.++++. ++.+++.|+ .+| ++..||..+.+-. ..+......+.+++.
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~--~d~-----~v~~wd~~~~~~~--~~~~~h~~~v~~v~~ 234 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA--CDA-----SAKLWDVREGMCR--QTFTGHESDINAICF 234 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCSEE--EEECCCSSCEEEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe--CCC-----cEEEEECCCCeeE--EEEcCCcCCEEEEEE
Confidence 3477777332 2111112222333344433 566778887 454 4556666554321 111111222333555
Q ss_pred e-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 227 S-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 227 l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
. ++.++| |+.+ .+|-.||..+.+++..+... .- ......+.+. -++.++++|+.+ +.|..||.
T Consensus 235 ~p~~~~l~s~s~d----~~v~iwd~~~~~~~~~~~~~---~~-~~~v~~~~~s-~~g~~l~~g~~d------~~i~vwd~ 299 (340)
T 1got_B 235 FPNGNAFATGSDD----ATCRLFDLRADQELMTYSHD---NI-ICGITSVSFS-KSGRLLLAGYDD------FNCNVWDA 299 (340)
T ss_dssp CTTSSEEEEEETT----SCEEEEETTTTEEEEEECCT---TC-CSCEEEEEEC-TTSSEEEEEETT------SEEEEEET
T ss_pred cCCCCEEEEEcCC----CcEEEEECCCCcEEEEEccC---Cc-ccceEEEEEC-CCCCEEEEECCC------CeEEEEEc
Confidence 4 455666 6554 46889999986644433221 00 0011222233 366777777643 47999999
Q ss_pred CCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 305 RSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 305 ~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
++.+.+-+.... ...+..++.. -++..++.|+.|+.
T Consensus 300 ~~~~~~~~~~~h--------~~~v~~~~~s-~dg~~l~s~s~D~~ 335 (340)
T 1got_B 300 LKADRAGVLAGH--------DNRVSCLGVT-DDGMAVATGSWDSF 335 (340)
T ss_dssp TTCCEEEEEECC--------SSCEEEEEEC-TTSSCEEEEETTSC
T ss_pred ccCcEeeEeecC--------CCcEEEEEEc-CCCCEEEEEcCCcc
Confidence 998866555543 1112122223 36677778888765
No 155
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.91 E-value=2.6 Score=39.82 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=101.0
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec---CCeEEEEEEeCCCccccceEEEEcCCC
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA---TGVVLGSAIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~---~g~Lyv~Gg~~g~~~~~~sve~yDp~~ 306 (472)
.+++++.+ ..|..||..+.+.+..+...... -.......+.|.+. ++.++++|+.+ +.|..||+++
T Consensus 36 ~~~~~~~~----~~v~vw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d------g~i~v~d~~~ 104 (366)
T 3k26_A 36 LVFATVGS----NRVTLYECHSQGEIRLLQSYVDA-DADENFYTCAWTYDSNTSHPLLAVAGSR------GIIRIINPIT 104 (366)
T ss_dssp EEEEEEET----TEEEEEEECGGGCEEEEEEEECS-CTTCCEEEEEEEECTTTCCEEEEEEETT------CEEEEECTTT
T ss_pred eEEEECCC----CEEEEEEcCCCcEEEeeeecccc-CCCCcEEEEEeccCCCCCCCEEEEecCC------CEEEEEEchh
Confidence 36664333 26889998885544333321100 00011233445542 15677777743 4799999999
Q ss_pred CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeE
Q 012060 307 GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKL 386 (472)
Q Consensus 307 ~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~ 386 (472)
++++.+.... ...+.+++....++.+++.|+.++....-|+++ . ..+..... +.... ....
T Consensus 105 ~~~~~~~~~~--------~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~--~~~~~~~~-~~~~~-----~~v~ 165 (366)
T 3k26_A 105 MQCIKHYVGH--------GNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---D--TLVAIFGG-VEGHR-----DEVL 165 (366)
T ss_dssp CCEEEEEESC--------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTT---T--EEEEEECS-TTSCS-----SCEE
T ss_pred ceEeeeecCC--------CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec---C--eEEEEecc-ccccc-----Ccee
Confidence 9988877644 122222223333678888999888755434432 1 22221000 01111 1222
Q ss_pred -EEEE-CCEEEEec--CCeEEEeeccccccc-------------cccCCcceeecc-ccccccCCCCceEEEeecCceEE
Q 012060 387 -IHCY-KNQVFVGR--GGSLEVWSRVREGRN-------------RSCSEGLFRRNF-VDRVEDSGRGAISRIDAGGNRLF 448 (472)
Q Consensus 387 -~~~~-~g~l~~~~--g~~~~v~~~~~~~~~-------------~~~~~~~~r~~~-~~~~~~~~~~~i~~~~~gg~r~f 448 (472)
++.. +++.++++ ++.|.+|+-...+.. ..+........+ .-.......+.|..+++-|+. +
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l 244 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDL-I 244 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTE-E
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCE-E
Confidence 2221 24444443 489999986422000 000000000000 000111245679999998665 5
Q ss_pred EeeeccceeEEeecCCC
Q 012060 449 VSREDVEGIEVWESSNL 465 (472)
Q Consensus 449 ~~~~~~~~~~vw~~~~~ 465 (472)
++-.....|-||+....
T Consensus 245 ~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKM 261 (366)
T ss_dssp EEECSSSEEEEEEESST
T ss_pred EEEecCCEEEEEeCCCc
Confidence 55555677999996543
No 156
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.90 E-value=0.77 Score=44.95 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=72.3
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
+.+++.|+ .+| ++-.||..+.+.... +......+.+++.. ++.++| |+.+ .+|-.||..+.+.+.
T Consensus 210 g~~l~sgs--~Dg-----~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D----~~v~lwd~~~~~~~~ 276 (354)
T 2pbi_B 210 GNTFVSGG--CDK-----KAMVWDMRSGQCVQA--FETHESDVNSVRYYPSGDAFASGSDD----ATCRLYDLRADREVA 276 (354)
T ss_dssp CCEEEEEE--TTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEE
T ss_pred CCEEEEEe--CCC-----eEEEEECCCCcEEEE--ecCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEE
Confidence 46777787 555 456677766543322 11112223335554 455666 6554 468899998854333
Q ss_pred ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec
Q 012060 257 EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD 336 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~ 336 (472)
.+.. .. .........+. .++.+.++|+.+ +.|.+||.++++.+-..... ...+..++...
T Consensus 277 ~~~~---~~-~~~~~~~~~~s-~~g~~l~~g~~d------~~i~vwd~~~~~~~~~l~~h--------~~~v~~l~~sp- 336 (354)
T 2pbi_B 277 IYSK---ES-IIFGASSVDFS-LSGRLLFAGYND------YTINVWDVLKGSRVSILFGH--------ENRVSTLRVSP- 336 (354)
T ss_dssp EECC---TT-CCSCEEEEEEC-TTSSEEEEEETT------SCEEEEETTTCSEEEEECCC--------SSCEEEEEECT-
T ss_pred EEcC---CC-cccceeEEEEe-CCCCEEEEEECC------CcEEEEECCCCceEEEEECC--------CCcEEEEEECC-
Confidence 2221 00 00011122222 456666777643 46999999998855444332 11122222233
Q ss_pred CCeEEEEcccCCC
Q 012060 337 ELTLFKICSKSGD 349 (472)
Q Consensus 337 ~~~iy~vGg~~g~ 349 (472)
++..++.|+.|+.
T Consensus 337 dg~~l~sgs~D~~ 349 (354)
T 2pbi_B 337 DGTAFCSGSWDHT 349 (354)
T ss_dssp TSSCEEEEETTSE
T ss_pred CCCEEEEEcCCCC
Confidence 6677778888764
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.80 E-value=1.9 Score=40.76 Aligned_cols=101 Identities=10% Similarity=0.071 Sum_probs=56.0
Q ss_pred eCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 227 SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 227 l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
.++.+|+ +.. .++|.+||+.+.+++..+.... ...+....+.+-+..+|+++. ..+.|..||+.
T Consensus 9 ~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~ 73 (349)
T 1jmx_B 9 AGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPD-----KFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLD 73 (349)
T ss_dssp TTCEEEEEEET----TTEEEEEETTTTEEEEEEECSS-----CCSSCEEEECTTSSEEEEEET------TTTEEEEEETT
T ss_pred CCCEEEEEeCC----CCeEEEEECCCCcEEEEEecCC-----CCCCceeEECCCCCEEEEEeC------CCCcEEEEeCC
Confidence 3566888 433 3578999999966444333210 001333444444456888753 23579999999
Q ss_pred CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEc
Q 012060 306 SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 306 ~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
+++++++...+.. ...+ +....+++....+..||+.+
T Consensus 74 t~~~~~~~~~~~~-~~~~-~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 74 TCKNTFHANLSSV-PGEV-GRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp TTEEEEEEESCCS-TTEE-EECSSCEEECTTSSEEEEEE
T ss_pred CCcEEEEEEcccc-cccc-cccccceEECCCCCEEEEEc
Confidence 9998877664310 0000 11122334455566677655
No 158
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.75 E-value=1 Score=51.47 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=85.1
Q ss_pred cccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeE
Q 012060 169 DNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVL 245 (472)
Q Consensus 169 ~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE 245 (472)
+.+.++++ -++...+.|+ .+| ++..||..+.+-.. .+......+.+++.. ++.+.| |+.+ .+|-
T Consensus 616 ~~v~~~~~s~~~~~l~s~~--~d~-----~i~vw~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~v~ 682 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCG--ADK-----TLQVFKAETGEKLL--DIKAHEDEVLCCAFSSDDSYIATCSAD----KKVK 682 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT----SEEE
T ss_pred ccEEEEEECCCCCEEEEEe--CCC-----eEEEEECCCCCEEE--EeccCCCCEEEEEEecCCCEEEEEeCC----CeEE
Confidence 33444444 3567777887 455 46677776654322 222222333345554 344555 6544 4799
Q ss_pred EEeCCCcccccccccccCCCcccccccceeEEe-cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcc
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARF 324 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~ 324 (472)
.||..+.+++..+.... .......+.+ .++.++++|+.+ +.|..||.++++++.+....
T Consensus 683 vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~~h-------- 742 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHS------EQVNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRNTMFGH-------- 742 (1249)
T ss_dssp EEETTTCCEEEEEECCS------SCEEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEEEECCC--------
T ss_pred EEECCCCceEEEEcCCC------CcEEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhheecCC--------
Confidence 99999965444332210 0112223333 255666777643 46999999999977776654
Q ss_pred cccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 325 GDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 325 ~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
...+..++... ++.+++.|+.++....-|+++
T Consensus 743 ~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 743 TNSVNHCRFSP-DDELLASCSADGTLRLWDVRS 774 (1249)
T ss_dssp SSCEEEEEECS-STTEEEEEESSSEEEEEEGGG
T ss_pred CCCEEEEEEec-CCCEEEEEECCCeEEEEeCCC
Confidence 12222223344 666778888887655445543
No 159
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.66 E-value=1.3 Score=42.84 Aligned_cols=147 Identities=9% Similarity=0.026 Sum_probs=71.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCcc--
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTLQ-- 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~~-- 253 (472)
++.+++.|+ .+| .+..||..+..|..+..+......+.+++... +. |+.|+.+ .+|-.||..+.+
T Consensus 22 ~g~~l~~~~--~d~-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 22 QRTEFVTTT--ATN-----QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD----RNAYVYEKRPDGTW 90 (377)
T ss_dssp SSSEEECCC--SSS-----CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT----SSEEEC------CC
T ss_pred CCCEEEEec--CCC-----EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC----CeEEEEEcCCCCce
Confidence 567777777 444 45667777777777776665555554466553 34 4446544 368889988733
Q ss_pred -cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee---eeEEcCCCCCCCCccccccc
Q 012060 254 -ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV---VWETNEPGSGRSARFGDSFA 329 (472)
Q Consensus 254 -~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~---vW~~~~~~~~~~~R~~~~~~ 329 (472)
+...+.. +.-....+.+.+ ++.++++|+.+ +.|.+||.++++. .=....+ . ...+.
T Consensus 91 ~~~~~~~~------~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~----h---~~~v~ 150 (377)
T 3dwl_C 91 KQTLVLLR------LNRAATFVRWSP-NEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRP----L---RSTIL 150 (377)
T ss_dssp CCEEECCC------CSSCEEEEECCT-TSSCCEEEESS------SCEEECCC-----CCCCEEECSS----C---CSCEE
T ss_pred eeeeEecc------cCCceEEEEECC-CCCEEEEEecC------CeEEEEEECCcccceeeeEeecc----c---CCCeE
Confidence 1111110 000112222333 45556666643 4699999998862 1222221 1 11122
Q ss_pred ceeeeecCCeEEEEcccCCCccccccc
Q 012060 330 DVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 330 d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+++... ++.+++.|+.++....-|++
T Consensus 151 ~~~~~~-~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 151 SLDWHP-NNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp EEEECT-TSSEEEEEESSSCEEEEEEC
T ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEEE
Confidence 222233 66788899988776554554
No 160
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.63 E-value=2.6 Score=41.88 Aligned_cols=232 Identities=13% Similarity=0.116 Sum_probs=105.3
Q ss_pred cceeeccCCcEEEeee---CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG---GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G---G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|+ +..+ +.| |.|..||... ........+-..+. ....++.+.+.|+ .++ .+..+|......
T Consensus 152 sv~fspd-g~~l-asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s~~~~~l~sgs--~d~-----~i~~~d~~~~~~ 221 (420)
T 4gga_A 152 SVAWIKE-GNYL-AVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSWNSYILSSGS--RSG-----HIHHHDVRVAEH 221 (420)
T ss_dssp EEEECTT-SSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTEEEEEE--TTS-----EEEEEETTSSSC
T ss_pred EEEECCC-CCEE-EEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEeeCCCEEEEEe--CCC-----ceeEeeecccce
Confidence 3444444 5555 445 3588888433 22111122222222 2235788888887 444 233444433221
Q ss_pred ccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGS 286 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~ 286 (472)
.+..+......+.++... ++...+ ++.+ +.+..||..+.+.....-+. ..-...+-....+.+.+..++++
T Consensus 222 -~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D----~~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 222 -HVATLSGHSQEVCGLRWAPDGRHLASGGND----NLVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp -EEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEESSCCSSCSCCSEE--ECCCSSCEEEEEECTTCTTEEEE
T ss_pred -eeEEecccccceeeeeecCCCCeeeeeecc----ccceEEeeccccccceeeee--ecccCCceeeeeeCCCcccEEEE
Confidence 111111111111112222 344445 5544 46778888874311000000 00000111234455566666665
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCCCcccccccccCCCCcEE
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSGDIAMADLRNLGEDPWVY 365 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g~~~~~dl~s~e~d~W~~ 365 (472)
++ |. ..++|..||.+++++........ .+..+.....+..|++.+| .++.+..-|+ ..+..
T Consensus 295 ~~--gs--~D~~I~iwd~~t~~~~~~~~~~~---------~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~-----~~~~~ 356 (420)
T 4gga_A 295 GG--GT--SDRHIRIWNVCSGACLSAVDAHS---------QVCSILWSPHYKELISGHGFAQNQLVIWKY-----PTMAK 356 (420)
T ss_dssp EE--CT--TTCEEEEEETTTTEEEEEEECSS---------CEEEEEEETTTTEEEEEECTTTCCEEEEET-----TTCCE
T ss_pred Ee--ec--CCCEEEEEeCCccccceeecccc---------ceeeeeecCCCCeEEEEEecCCCEEEEEEC-----CCCcE
Confidence 44 22 24689999999999777666441 1111112444566665555 4444332122 22445
Q ss_pred eecCCCCcccCCCCCCCcCe-EEEE-ECCEEEEecC--CeEEEeecc
Q 012060 366 MEDKNPSMISSSGNNNGENK-LIHC-YKNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 366 ~~~~~~~m~~~~~~~~~~~~-~~~~-~~g~l~~~~g--~~~~v~~~~ 408 (472)
+.. +.... ..+ .++. -+|+.+++++ +.|-+|.=-
T Consensus 357 v~~----l~gH~-----~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 357 VAE----LKGHT-----SRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEE----ECCCS-----SCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEE----EcCCC-----CCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 554 32222 112 1222 2566666654 789999754
No 161
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=94.44 E-value=0.05 Score=54.57 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred CcEEEeee-CceEEee-------cccCCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC--Ccccc
Q 012060 141 GSLWIAHG-GQISVYD-------WNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTD 210 (472)
Q Consensus 141 g~l~va~G-G~Ve~YD-------W~~~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~ 210 (472)
+.+|+... |.|.++| |+... ..... ..++.++.+|++++ .+| .+.++|+.+ ..|.-
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s------~p~~~~g~~~v~~s--~dg-----~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQ------VPTHVEEPAFLPDP--NDG-----SLYTLGSKNNEGLTKL 75 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCC------CC-----CCEEECT--TTC-----CEEEC-----CCSEEC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC-CCcee------cceEcCCCEEEEeC--CCC-----EEEEEECCCCceeeee
Confidence 55663322 4588898 87722 11111 12235677888876 444 345666643 33543
Q ss_pred CCCCcCc-ccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEe
Q 012060 211 PSDPRIY-RATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA 289 (472)
Q Consensus 211 ~a~m~~~-R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~ 289 (472)
....... .+.. +...++.||+|.. ...+-+||+.| |+ -.|+.-.+......+.++.||+++.
T Consensus 76 ~~~~~~~~~~sp--~~~~~~~v~~g~~----dg~v~a~D~~t-------G~---~~w~~~~~~~~~~~p~~~~v~~~~~- 138 (369)
T 2hz6_A 76 PFTIPELVQASP--CRSSDGILYMGKK----QDIWYVIDLLT-------GE---KQQTLSSAFADSLSPSTSLLYLGRT- 138 (369)
T ss_dssp SCCHHHHHTTCS--CC-----CCCCEE----EEEEEEECCC--------------------------------EEEEEE-
T ss_pred eccCccccccCc--eEecCCEEEEEeC----CCEEEEEECCC-------Cc---EEEEecCCCcccccccCCEEEEEec-
Confidence 2221111 1111 1124677888432 23688999999 44 3476644322222336778887532
Q ss_pred CCCccccceEEEEcCCCCeeeeEEcC
Q 012060 290 WGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.+.|.+||+++++++|+...
T Consensus 139 ------dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 139 ------EYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp ------EEEEECCCSSSSSCCCEEEE
T ss_pred ------CCEEEEEECCCCCEEEeEec
Confidence 35799999999999999763
No 162
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.30 E-value=3.8 Score=39.04 Aligned_cols=230 Identities=12% Similarity=0.082 Sum_probs=109.3
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++...+.|+ .++ ++-.||..+.+-. ..+......+.+++... +.+.+ |+.+ .+|-.||.......
T Consensus 76 dg~~l~s~s--~D~-----~v~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~D----~~i~vwd~~~~~~~ 142 (319)
T 3frx_A 76 DGAYALSAS--WDK-----TLRLWDVATGETY--QRFVGHKSDVMSVDIDKKASMIISGSRD----KTIKVWTIKGQCLA 142 (319)
T ss_dssp TSSEEEEEE--TTS-----EEEEEETTTTEEE--EEEECCSSCEEEEEECTTSCEEEEEETT----SCEEEEETTSCEEE
T ss_pred CCCEEEEEe--CCC-----EEEEEECCCCCee--EEEccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEE
Confidence 566677777 454 4566776655421 11221222333354443 44555 6554 46888998752211
Q ss_pred cccccccCCCcccccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
.-.+. ..| + ..+.+.+ .++.++++|+.+ +.|..||.++.+..-+.... ...+..
T Consensus 143 ~~~~h---~~~--v--~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~h--------~~~v~~ 201 (319)
T 3frx_A 143 TLLGH---NDW--V--SQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGH--------NSNINT 201 (319)
T ss_dssp EECCC---SSC--E--EEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEEECCC--------CSCEEE
T ss_pred EEecc---CCc--E--EEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhheeecCC--------CCcEEE
Confidence 11111 111 1 1112222 245566777643 46999999998855554433 111112
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecCCeEEEeecc
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRGGSLEVWSRV 408 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g~~~~v~~~~ 408 (472)
++.. -++.+++.|+.++....=|+++- ..+.. +..... -..++.. +..|.++..+.+.||+-.
T Consensus 202 ~~~s-p~g~~l~s~~~dg~i~iwd~~~~-----~~~~~----~~~~~~-----v~~~~~sp~~~~la~~~~~~i~v~~~~ 266 (319)
T 3frx_A 202 LTAS-PDGTLIASAGKDGEIMLWNLAAK-----KAMYT----LSAQDE-----VFSLAFSPNRYWLAAATATGIKVFSLD 266 (319)
T ss_dssp EEEC-TTSSEEEEEETTCEEEEEETTTT-----EEEEE----EECCSC-----EEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred EEEc-CCCCEEEEEeCCCeEEEEECCCC-----cEEEE----ecCCCc-----EEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence 2223 36788889998876543344321 22221 111110 1112211 234555566789999754
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecC
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
.. .+-. .+|..+.+..+. ..+.|..++|- |..| ++=.+...|.||+-.
T Consensus 267 ~~----~~~~-~~~~~~~~~~~~-~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 267 PQ----YLVD-DLRPEFAGYSKA-AEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp TE----EEEE-EECCCCTTCCGG-GCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred cC----eeee-ccCccccccccC-cCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence 22 0000 113222222111 23357777664 5455 455556679999853
No 163
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.28 E-value=1.8 Score=47.01 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=85.1
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCcc-----ccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVR-----THLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R-----~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
++.||+... +.|.++| |+. ....... ++. ...++++.++.||+... ++ .+-++|..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~v~v~~~---dg-----~l~alD~~t 147 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDV-VNRGVALWKGKVYVGAW---DG-----RLIALDAAT 147 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCS-CCCCCEEETTEEEEECT---TS-----EEEEEETTT
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccC-CCCCceEECCEEEEEcC---CC-----EEEEEECCC
Confidence 467775433 4588899 887 3322111 111 11134456788887654 33 345556543
Q ss_pred C--ccccCCC-C-c-CcccceeEEEEeCCeEEEEecCC--CCCceeEEEeCCCcccccccccccC---------------
Q 012060 206 A--HWTDPSD-P-R-IYRATVTAIADSPTTVFSSLVCP--HKENSVLLIDKSTLQISSEIGRQSG--------------- 263 (472)
Q Consensus 206 ~--~W~~~a~-m-~-~~R~~~~ava~l~g~IYAGg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~--------------- 263 (472)
- .|..-.. - . ...... +..+.++.||++.... .....|-.||+.|.+.+-.+.....
T Consensus 148 G~~~W~~~~~~~~~~~~~~~~-~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~ 226 (677)
T 1kb0_A 148 GKEVWHQNTFEGQKGSLTITG-APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA 226 (677)
T ss_dssp CCEEEEEETTTTCCSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred CCEEeeecCCcCcCcCccccc-CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence 3 3665322 0 0 001111 2445689999943221 2246789999999442211100000
Q ss_pred CCccc---------ccc--cceeEEecCCeEEEEEEeC------------CCccccceEEEEcCCCCeeeeEEcCC
Q 012060 264 ASSKN---------MAV--GKLTWIPATGVVLGSAIAW------------GAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 264 ~~W~~---------v~~--m~~~~~~~~g~Lyv~Gg~~------------g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..|.. ... .....-+-.++||+..+.. |..-+.++|-.+|++|++++|+....
T Consensus 227 ~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence 11210 000 0001123578999865432 22224568999999999999998743
No 164
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.27 E-value=3.3 Score=38.19 Aligned_cols=230 Identities=10% Similarity=0.056 Sum_probs=113.4
Q ss_pred cccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEE
Q 012060 169 DNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLL 246 (472)
Q Consensus 169 ~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~ 246 (472)
+.+.++++-++..++.|+ .+| .+..||..+.+-...- ......+.+++... +. |++|+.++ .+-.
T Consensus 19 ~~v~~~~~~~~~~l~s~~--~dg-----~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~ 85 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVS--RDG-----TVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDT----MING 85 (313)
T ss_dssp SCEEEEEEEETTEEEEEE--TTS-----EEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETTS----CEEE
T ss_pred CCcEEEEecCCCEEEEEE--cCC-----cEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCCC----eEEE
Confidence 334455566777777887 455 4455665444322211 11122222355443 34 44465543 5666
Q ss_pred EeCCCcc---cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCc
Q 012060 247 IDKSTLQ---ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSAR 323 (472)
Q Consensus 247 YDp~t~~---~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R 323 (472)
||....+ ++..+.. +. .....+..++.++++|+. .+.|..|| +++.++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~------~~---~~i~~~~~~~~~l~~~~~------d~~i~~~d--~~~~~~~~~~~------- 141 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIG------HQ---GNVCSLSFQDGVVISGSW------DKTAKVWK--EGSLVYNLQAH------- 141 (313)
T ss_dssp EETTCCTTSCC-CEECC------CS---SCEEEEEEETTEEEEEET------TSEEEEEE--TTEEEEEEECC-------
T ss_pred EEeeecCCCCcccchhh------cc---cCEEEEEecCCEEEEEeC------CCCEEEEc--CCcEEEecccC-------
Confidence 7765522 1111110 00 011112225556666663 34799999 56655777655
Q ss_pred ccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEEe-cCCe
Q 012060 324 FGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFVG-RGGS 401 (472)
Q Consensus 324 ~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~~-~g~~ 401 (472)
...+.+++....++.++++|+.++....-|.. ..+.. +.....+ .-..++ .-++++++. .++.
T Consensus 142 -~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~----~~~~~~~---~i~~~~~~~~~~~~~~~~dg~ 206 (313)
T 3odt_A 142 -NASVWDAKVVSFSENKFLTASADKTIKLWQND-------KVIKT----FSGIHND---VVRHLAVVDDGHFISCSNDGL 206 (313)
T ss_dssp -SSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------EEEEE----ECSSCSS---CEEEEEEEETTEEEEEETTSE
T ss_pred -CCceeEEEEccCCCCEEEEEECCCCEEEEecC-------ceEEE----EeccCcc---cEEEEEEcCCCeEEEccCCCe
Confidence 12222223344367778888888765432211 11211 1110110 112233 346675444 3488
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
|.+|+-... +. .+.+- ...+.|+.+++--+..+++=.....|-||+...
T Consensus 207 i~i~d~~~~--------~~-~~~~~-----~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 207 IKLVDMHTG--------DV-LRTYE-----GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEEEETTTC--------CE-EEEEE-----CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred EEEEECCch--------hh-hhhhh-----cCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 999986422 11 11111 234679999987664566667778899998543
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=94.25 E-value=4.1 Score=39.18 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=110.1
Q ss_pred eeeeecCCCCccccC---CCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcc-cccccccccCC---Cccc
Q 012060 197 LSSSRHVASAHWTDP---SDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQ-ISSEIGRQSGA---SSKN 268 (472)
Q Consensus 197 sve~ydp~t~~W~~~---a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~-~~~~~~~~~~~---~W~~ 268 (472)
.+..+|+.+.+.... ..+..++ ++++. +|.||+.... .+.|-+||+.... .+..++..... .-..
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~----gia~d~~g~l~v~d~~---~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPH----GLSIDTDGNYWVTDVA---LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEE----EEEECTTSCEEEEETT---TTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred cEEEEECCCCeEEeccCCCccCCce----EEEECCCCCEEEEECC---CCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 466677765443221 1122222 36654 5779994222 3579999997632 34444431100 0111
Q ss_pred ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCC---CCcccccccceeeeecCCeEEEEcc
Q 012060 269 MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGR---SARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 269 v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~---~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
..|..+...+.++.||++... ..+.|.+||+ +++.++++....... ...+. .-..+++...++.||+...
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~-----~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~-~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGY-----CNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFS-VPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECS-----SCCEEEEECT-TSCEEEEECEECCSSSCCTTEES-CEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEeCCCCeEEEEeCC-----CCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccC-CCcEEEEECCCCEEEEEEC
Confidence 123323333348999998641 1357999995 556566664332110 00110 0112334444599999886
Q ss_pred cCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC---------CeEEEeecccccccccc
Q 012060 346 KSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG---------GSLEVWSRVREGRNRSC 416 (472)
Q Consensus 346 ~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g---------~~~~v~~~~~~~~~~~~ 416 (472)
.++.....|+. +++....-. ....+. .-..++...+.+|+..| ..|.+|+...-
T Consensus 216 ~~~~I~~~~~~---~G~~~~~~~------~~~~~~--~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g------ 278 (329)
T 3fvz_A 216 ENGRIQCFKTD---TKEFVREIK------HASFGR--NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG------ 278 (329)
T ss_dssp TTTEEEEEETT---TCCEEEEEC------CTTTTT--CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC------
T ss_pred CCCEEEEEECC---CCcEEEEEe------ccccCC--CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC------
Confidence 55443221211 233322211 111110 11233334455555543 24556653211
Q ss_pred CCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeecC
Q 012060 417 SEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 417 ~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~ 463 (472)
++... ++.. .........|++.-| .|||+-..-+.|-+|+..
T Consensus 279 --~~~~~--~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 279 --EIIDV--FKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp --CEEEE--ECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred --eEEEE--EcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 11111 1110 112335777887654 899998888899999754
No 166
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.23 E-value=2 Score=42.57 Aligned_cols=154 Identities=8% Similarity=0.057 Sum_probs=80.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC--cccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI--YRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~--~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++.+++.|+ .+| .+..||..+.+-.. .+.. ....+.+++.. ++.+.+ |+.+ ..|-.||..+.+
T Consensus 181 ~~~~l~~~~--~d~-----~i~iwd~~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALT--NLS-----RVIIFDIRTLERLQ--IIENSPRHGAVSSICIDEECCVLILGTTR----GIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEE--TTS-----EEEEEETTTCCEEE--EEECCGGGCCEEEEEECTTSCEEEEEETT----SCEEEEETTTTE
T ss_pred CCCEEEEEe--CCC-----eEEEEeCCCCeeeE--EEccCCCCCceEEEEECCCCCEEEEEcCC----CeEEEEEcCCcc
Confidence 367777777 444 56677776654221 1111 12233335543 445555 6554 468899999866
Q ss_pred cccccccccCCCcccccccceeEEe---cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC-C-------
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIP---ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS-A------- 322 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~---~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~-~------- 322 (472)
++..+.. ..-.. -..+.+.+ -++.++++|+. .+.|..||.++++++-+....-.... .
T Consensus 248 ~~~~~~~---~~~~~--v~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T 3gre_A 248 LIRSWSF---GDHAP--ITHVEVCQFYGKNSVIVVGGSS------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316 (437)
T ss_dssp EEEEEBC---TTCEE--EEEEEECTTTCTTEEEEEEEST------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred EEEEEec---CCCCc--eEEEEeccccCCCccEEEEEcC------CCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence 5443321 00011 12222332 24556666652 45799999999997777664310000 0
Q ss_pred ----------cccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 323 ----------RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 323 ----------R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
.....+..++.. ++.+++.|+.++.+..-|+++
T Consensus 317 ~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 317 GLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp SGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTC
T ss_pred ccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCC
Confidence 011112223333 678888999887765445543
No 167
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.13 E-value=4.4 Score=40.19 Aligned_cols=235 Identities=15% Similarity=0.163 Sum_probs=110.4
Q ss_pred cceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEe
Q 012060 171 ITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLID 248 (472)
Q Consensus 171 v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YD 248 (472)
|+++++. ++..+++|+ .+| ++..||..+.+-. ..+......+.+++ .++.+.+ |+.+ ..+-.||
T Consensus 150 V~sv~fspdg~~lasgs--~Dg-----~v~iWd~~~~~~~--~~~~~h~~~v~~~s-~~~~~l~sgs~d----~~i~~~d 215 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGT--SSA-----EVQLWDVQQQKRL--RNMTSHSARVGSLS-WNSYILSSGSRS----GHIHHHD 215 (420)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----CEEEEETTTTEEE--EEECCCSSCEEEEE-EETTEEEEEETT----SEEEEEE
T ss_pred EEEEEECCCCCEEEEEE--CCC-----eEEEEEcCCCcEE--EEEeCCCCceEEEe-eCCCEEEEEeCC----CceeEee
Confidence 4556654 567888888 555 4566777665422 22222233333343 4555656 6544 4677888
Q ss_pred CCCccc-ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccc
Q 012060 249 KSTLQI-SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDS 327 (472)
Q Consensus 249 p~t~~~-~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~ 327 (472)
..+... +..+.. .... .....+ .-++..+++|+.+ +.|.+||.++++..+...... ......
T Consensus 216 ~~~~~~~~~~~~~----h~~~--~~~~~~-~~~g~~l~s~~~D------~~v~i~~~~~~~~~~~~~~~~----~~~~~~ 278 (420)
T 4gga_A 216 VRVAEHHVATLSG----HSQE--VCGLRW-APDGRHLASGGND------NLVNVWPSAPGEGGWVPLQTF----TQHQGA 278 (420)
T ss_dssp TTSSSCEEEEEEC----CSSC--EEEEEE-CTTSSEEEEEETT------SCEEEEESSCCSSCSCCSEEE----CCCSSC
T ss_pred ecccceeeEEecc----cccc--eeeeee-cCCCCeeeeeecc------ccceEEeeccccccceeeeee----cccCCc
Confidence 776220 000000 0000 011112 2456666776643 468999988876222111110 000111
Q ss_pred ccceeeeecCCeEEEEcc--cCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC---CeE
Q 012060 328 FADVDVDVDELTLFKICS--KSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG---GSL 402 (472)
Q Consensus 328 ~~d~~v~~~~~~iy~vGg--~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g---~~~ 402 (472)
+..++....+..++++|+ .|+....-|++ ....+.. +..... .........++.|+++.| +.|
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~-----t~~~~~~----~~~~~~---v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-----SGACLSA----VDAHSQ---VCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETT-----TTEEEEE----EECSSC---EEEEEEETTTTEEEEEECTTTCCE
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCC-----cccccee----eccccc---eeeeeecCCCCeEEEEEecCCCEE
Confidence 212223344666766654 44433221222 1223322 111111 011111122445555533 789
Q ss_pred EEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeec
Q 012060 403 EVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWES 462 (472)
Q Consensus 403 ~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~ 462 (472)
.||+-... .. -.-+-++ .+.|+.+++--| ++++|=.+-..|-||+-
T Consensus 347 ~iwd~~~~--------~~-v~~l~gH-----~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 347 VIWKYPTM--------AK-VAELKGH-----TSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEETTTC--------CE-EEEECCC-----SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEECCCC--------cE-EEEEcCC-----CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 99986422 11 1123333 457999998532 45566666678999974
No 168
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.93 E-value=3.4 Score=38.76 Aligned_cols=237 Identities=13% Similarity=0.105 Sum_probs=109.2
Q ss_pred cccccceeeee-C-CeEEEEcCcCCCCceecceeeeecCCCCcccc---CCCCcCcccceeEEEEe-CCeEEE-EecCCC
Q 012060 167 HLDNITSIRHV-W-SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD---PSDPRIYRATVTAIADS-PTTVFS-SLVCPH 239 (472)
Q Consensus 167 ~~~~v~~v~~l-~-~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~---~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~ 239 (472)
|-+.|+++++. + +.+.+.|| .+| ++-.+|..+.+... ...+......+.+++.. ++.+.+ |+.+
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s--~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-- 107 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSAS--RDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-- 107 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEE--TTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred ccCCEEEEEEeCCCCCEEEEEc--CCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc--
Confidence 44556666654 2 56777887 555 34445544333211 11111112233334444 344444 6554
Q ss_pred CCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 240 KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 240 ~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
..|..|+....+........ ............+.++++|+.+ +.+..||.+.... .......
T Consensus 108 --~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~s~s~d------~~~~~~d~~~~~~-~~~~~~~-- 169 (340)
T 4aow_A 108 --GTLRLWDLTTGTTTRRFVGH-------TKDVLSVAFSSDNRQIVSGSRD------KTIKLWNTLGVCK-YTVQDES-- 169 (340)
T ss_dssp --SEEEEEETTTTEEEEEEECC-------SSCEEEEEECTTSSCEEEEETT------SCEEEECTTSCEE-EEECSSS--
T ss_pred --ccceEEeecccceeeeecCC-------CCceeEEEEeecCccceeecCC------CeEEEEEeCCCce-EEEEecc--
Confidence 36778888874421111110 0001111122344555666643 4588999887752 1222111
Q ss_pred CCCcccccccceeeee-cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEE-ECCEEEE
Q 012060 320 RSARFGDSFADVDVDV-DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHC-YKNQVFV 396 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~-~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~-~~g~l~~ 396 (472)
.. ..+..++... -...+++.|+.++....-|+++ ...+.. +..... .+ .++. -++++++
T Consensus 170 ~~----~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-----~~~~~~----~~~h~~-----~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 170 HS----EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-----CKLKTN----HIGHTG-----YLNTVTVSPDGSLCA 231 (340)
T ss_dssp CS----SCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-----TEEEEE----ECCCSS-----CEEEEEECTTSSEEE
T ss_pred cc----CcccceEEccCCCCcEEEEEcCCCEEEEEECCC-----CceeeE----ecCCCC-----cEEEEEECCCCCEEE
Confidence 01 1111111222 2345677788776543323322 233332 111111 11 2222 2456666
Q ss_pred ecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 397 GRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 397 ~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+++ +.|-+|+-... +.+ +. + .....|+.+.+=-++.+++=.....|.||+..
T Consensus 232 s~s~Dg~i~iwd~~~~-------~~~-~~-~------~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEG-------KHL-YT-L------DGGDIINALCFSPNRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp EEETTCEEEEEETTTT-------EEE-EE-E------ECSSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred EEeCCCeEEEEEeccC-------cee-ee-e------cCCceEEeeecCCCCceeeccCCCEEEEEECC
Confidence 644 88999976422 111 11 1 12335777777666666666666788899753
No 169
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=93.93 E-value=2.6 Score=39.86 Aligned_cols=183 Identities=11% Similarity=0.102 Sum_probs=88.1
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
..|..||..+.+++..+.... .....+.+.+ ++.++++|+. .+.|..||.++++++.+...+
T Consensus 54 g~i~vwd~~~~~~~~~~~~h~------~~v~~~~~~~-~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~----- 115 (369)
T 3zwl_B 54 SSASVWYSLNGERLGTLDGHT------GTIWSIDVDC-FTKYCVTGSA------DYSIKLWDVSNGQCVATWKSP----- 115 (369)
T ss_dssp SCEEEEETTTCCEEEEECCCS------SCEEEEEECT-TSSEEEEEET------TTEEEEEETTTCCEEEEEECS-----
T ss_pred CEEEEEeCCCchhhhhhhhcC------CcEEEEEEcC-CCCEEEEEeC------CCeEEEEECCCCcEEEEeecC-----
Confidence 368889988865444332210 0112233433 4556666663 357999999999977777633
Q ss_pred CcccccccceeeeecCCeEEEEcccC-----CCcccccccccC-CCCcEEeecCCCC-cccCCCCCCCcCeEEEEE--CC
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKS-----GDIAMADLRNLG-EDPWVYMEDKNPS-MISSSGNNNGENKLIHCY--KN 392 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~-----g~~~~~dl~s~e-~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~--~g 392 (472)
..+..++... ++..+++++.+ +....-|++.-. ...+......... +...... ......++ ++
T Consensus 116 ----~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 187 (369)
T 3zwl_B 116 ----VPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL---DAATVAGWSTKG 187 (369)
T ss_dssp ----SCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC---CCEEEEEECGGG
T ss_pred ----CCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc---cceeEEEEcCCC
Confidence 1122222334 55556666655 444433443322 2222222110000 1111100 01222222 23
Q ss_pred -EEEEe-cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCC
Q 012060 393 -QVFVG-RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 393 -~l~~~-~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
.|++. .++.|.+|+-... ... .+.+- ...+.|..+++ -|..|++. .....|-||+...
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~-------~~~-~~~~~-----~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNN-------YEY-VDSID-----LHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVST 249 (369)
T ss_dssp CEEEEEETTSEEEEEETTTT-------TEE-EEEEE-----CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTT
T ss_pred CEEEEEcCCCEEEEEECCCC-------cEe-EEEEe-----cCCCceeEEEECCCCCEEEEe-cCCceEEEEECCC
Confidence 34433 3488999986421 111 11111 13457888887 45555544 5556789998654
No 170
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.91 E-value=3.9 Score=37.70 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=84.7
Q ss_pred eeeccCCcEEEeee--CceEEee-ccc-C--CCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 135 TASSDDGSLWIAHG--GQISVYD-WNL-S--HSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 135 r~~~~~g~l~va~G--G~Ve~YD-W~~-~--~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
...|. +..+++.+ |.+..|| |.. . .......+-..+.++.. ++..++.|+ .+| .+..||......
T Consensus 66 ~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~--~d~-----~i~~~d~~~~~~ 136 (313)
T 3odt_A 66 CYDSE-KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGS--WDK-----TAKVWKEGSLVY 136 (313)
T ss_dssp EEETT-TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEE--TTS-----EEEEEETTEEEE
T ss_pred EECCC-CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEe--CCC-----CEEEEcCCcEEE
Confidence 33444 44443433 4588888 543 1 12222223334444544 677777777 454 344455222222
Q ss_pred ccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEE
Q 012060 209 TDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLG 285 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv 285 (472)
.... ....+.+++.. ++.+++ ++.+ ..+..||..+. +..+.. -.........+.+ ++. ++
T Consensus 137 ~~~~----~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~--~~~~~~-----~~~~~i~~~~~~~-~~~-~~ 199 (313)
T 3odt_A 137 NLQA----HNASVWDAKVVSFSENKFLTASAD----KTIKLWQNDKV--IKTFSG-----IHNDVVRHLAVVD-DGH-FI 199 (313)
T ss_dssp EEEC----CSSCEEEEEEEETTTTEEEEEETT----SCEEEEETTEE--EEEECS-----SCSSCEEEEEEEE-TTE-EE
T ss_pred eccc----CCCceeEEEEccCCCCEEEEEECC----CCEEEEecCce--EEEEec-----cCcccEEEEEEcC-CCe-EE
Confidence 2111 11222123332 454444 6544 36788885441 111111 0111112233333 455 55
Q ss_pred EEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 286 SAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 286 ~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+|+. .+.|..||.++++++.+..... ..+..++... ++. ++.|+.++....-|++
T Consensus 200 ~~~~------dg~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~~~-~~~-l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 200 SCSN------DGLIKLVDMHTGDVLRTYEGHE--------SFVYCIKLLP-NGD-IVSCGEDRTVRIWSKE 254 (313)
T ss_dssp EEET------TSEEEEEETTTCCEEEEEECCS--------SCEEEEEECT-TSC-EEEEETTSEEEEECTT
T ss_pred EccC------CCeEEEEECCchhhhhhhhcCC--------ceEEEEEEec-CCC-EEEEecCCEEEEEECC
Confidence 5553 3579999999999888876551 1222222233 344 6678877765443433
No 171
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.66 E-value=5.2 Score=38.39 Aligned_cols=119 Identities=12% Similarity=0.123 Sum_probs=61.1
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CC-EEEEec-C--CeEEEeec
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KN-QVFVGR-G--GSLEVWSR 407 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g-~l~~~~-g--~~~~v~~~ 407 (472)
..-.+..||+.+..++.....|++ ++++..+..... ...... .-..++.. +| +||++. + +.|.||.-
T Consensus 218 ~spdg~~l~v~~~~~~~v~v~~~~---~g~~~~~~~~~~-~~~~~~----~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 218 FNSDGKFAYLINEIGGTVIAFRYA---DGMLDEIQTVAA-DTVNAQ----GSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp ECTTSSEEEEEETTTCEEEEEEEE---TTEEEEEEEEES-CSSCCC----CEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred EcCCCCEEEEEcCCCCeEEEEEec---CCceEEeEEEec-CCCCCC----CcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 456566788887555544433333 344433332100 111111 11234432 34 588864 3 68999975
Q ss_pred cccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCCCCcceE
Q 012060 408 VREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSNLSGVVC 470 (472)
Q Consensus 408 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~~~~~~ 470 (472)
... +.++ +. +...+. +..+..+++- |.+||++-.+...|.||+-....|.+.
T Consensus 290 ~~~------~g~~-~~--~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 290 DET------NGTL-TK--VGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp CTT------TCCE-EE--EEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cCC------CCcE-EE--eeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 311 1111 10 111111 3345666664 889999998889999987655556543
No 172
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.64 E-value=1.2 Score=44.74 Aligned_cols=153 Identities=10% Similarity=0.155 Sum_probs=83.1
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
+.|.+.++.+.|+|+.+| .|.+||..+++..=..... .. ...+.+++..-.++.+++.|+.|+.+..-
T Consensus 125 l~~~P~~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~---gH---~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGG------DIMLWNFGIKDKPTFIKGI---GA---GGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEECSSCTTCEEEEETTS------CEEEECSSCCSCCEEECCC---SS---SCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred EEEeCCCCCEEEEEeCCC------EEEEEECCCCCceeEEEcc---CC---CCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 344444556677887544 6999999887621111111 00 12232333333467788889998875543
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccc
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVE 430 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~ 430 (472)
|++ ++.-..+... .... ..-..++.. +++++++++ |.|.+|+--. +.+ + .+-+
T Consensus 193 d~~---~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~--------~~~-~-~~~~--- 248 (435)
T 4e54_B 193 DFK---GNILRVFASS----DTIN----IWFCSLDVSASSRMVVTGDNVGNVILLNMDG--------KEL-W-NLRM--- 248 (435)
T ss_dssp ETT---SCEEEEEECC----SSCS----CCCCCEEEETTTTEEEEECSSSBEEEEESSS--------CBC-C-CSBC---
T ss_pred ecc---CCceeEEecc----CCCC----ccEEEEEECCCCCEEEEEeCCCcEeeeccCc--------cee-E-EEec---
Confidence 443 2322223220 0011 012233332 566666655 7899998421 111 1 1111
Q ss_pred cCCCCceEEEee--cCceEEEeeeccceeEEeecCC
Q 012060 431 DSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 431 ~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
..+.|+.+++ -|+.+|++-..-..|-||+-..
T Consensus 249 --h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 249 --HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp --CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred --ccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 2457999988 4777888888778899998544
No 173
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=93.62 E-value=0.35 Score=46.46 Aligned_cols=100 Identities=10% Similarity=0.164 Sum_probs=50.7
Q ss_pred CcEEEeee--CceEEeeccc-C--CCCCccccccccceeeee---CCeEEEEcCcCCCCceecceeeeecCCCCccccCC
Q 012060 141 GSLWIAHG--GQISVYDWNL-S--HSVTVRTHLDNITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS 212 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~--~m~~~R~~~~~v~~v~~l---~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a 212 (472)
+..++..+ |.|..||... . ...+.+.+-+.+.++++. ++.+.+.|+ .++ ++-.||..+.+|....
T Consensus 25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s--~D~-----~v~iWd~~~~~~~~~~ 97 (316)
T 3bg1_A 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS--YDR-----KVIIWREENGTWEKSH 97 (316)
T ss_dssp GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE--TTS-----CEEEECCSSSCCCEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE--CCC-----EEEEEECCCCcceEEE
Confidence 44443333 3477777332 1 111122233344455543 256777777 454 4567787776665443
Q ss_pred CCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCC
Q 012060 213 DPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKST 251 (472)
Q Consensus 213 ~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t 251 (472)
.+......+.+++... +.++| |+.+ .+|-.||..+
T Consensus 98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D----~~i~lwd~~~ 136 (316)
T 3bg1_A 98 EHAGHDSSVNSVCWAPHDYGLILACGSSD----GAISLLTYTG 136 (316)
T ss_dssp EECCCSSCCCEEEECCTTTCSCEEEECSS----SCEEEEEECS
T ss_pred EccCCCCceEEEEECCCCCCcEEEEEcCC----CCEEEEecCC
Confidence 3322233333455543 45556 6544 4677888776
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.62 E-value=5 Score=37.98 Aligned_cols=118 Identities=9% Similarity=-0.006 Sum_probs=60.1
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCC-CCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCP-HKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~-~~l~sVE~YDp~t~~~ 254 (472)
-++.||+++. .+ ..+.+||+.+.+......... ..+.+++.. ++.||++.... .....|-+||+.+.+.
T Consensus 54 ~~g~l~~~~~--~~-----~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 54 RQGQLFLLDV--FE-----GNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp TTSCEEEEET--TT-----CEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCCCEEEEEC--CC-----CEEEEEeCCCCcEEEEeeCCC--CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 3678888876 33 256778888777655321111 122235554 66788843221 1235788999988431
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
..-+.. .-....+.... ..-+|.||++...+........|.+||+.+++
T Consensus 125 ~~~~~~----~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 125 QDIIED----LSTAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp EEEECS----SSSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred EEEEcc----CccCCcccceE-ECCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence 100000 00000011111 12467888865421110013579999998876
No 175
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.58 E-value=4.2 Score=38.75 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+|.||+++..++ .+.|..||+.+++ ++..... ...+....+++....+..||+.+..++....-|+..
T Consensus 50 dg~l~~~~~~~~----~~~v~~~~~~~g~--~~~~~~~----~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-- 117 (347)
T 3hfq_A 50 KDCLYSVDKEDD----EGGIAAWQIDGQT--AHKLNTV----VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA-- 117 (347)
T ss_dssp TCEEEEEEEETT----EEEEEEEEEETTE--EEEEEEE----EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT--
T ss_pred CCeEEEEEecCC----CceEEEEEecCCc--EEEeeee----ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC--
Confidence 667888764321 3589999998887 4333210 000222233445666677887775555433323331
Q ss_pred CCCcEEeecCCCC--cccCCCCCCCcCeE-EEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCC
Q 012060 360 EDPWVYMEDKNPS--MISSSGNNNGENKL-IHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433 (472)
Q Consensus 360 ~d~W~~~~~~~~~--m~~~~~~~~~~~~~-~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 433 (472)
+.....+...... -+..|. ....+- ++. -+|+||++. ++.|.+|.-... +.+.. .. ......
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~---g~~~~---~~----~~~~~~ 185 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQ--DGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA---GQLSE---QS----VLTMEA 185 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTC--SSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT---SCEEE---EE----EEECCT
T ss_pred CCCeeecceeecCCCCCCccc--cCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC---CcEEE---ee----eEEcCC
Confidence 2223333220000 000110 001222 332 256788884 468999986411 11110 00 001112
Q ss_pred CCceEEEee--cCceEEEeeeccceeEEeecCCCCc
Q 012060 434 RGAISRIDA--GGNRLFVSREDVEGIEVWESSNLSG 467 (472)
Q Consensus 434 ~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~~~ 467 (472)
+..+..+++ -|.+||++-.....|.||+.....|
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 223555555 4778999988888899998654334
No 176
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.48 E-value=5.5 Score=38.09 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=75.8
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.++++|+.+ ++|..||.+.....++........ ...+.+++... ++.+++.|+.|+....-|++
T Consensus 118 ~g~~las~s~D------~~v~iwd~~~~~~~~~~~~~~~~h----~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~--- 183 (330)
T 2hes_X 118 DGYYLATCSRD------KSVWIWETDESGEEYECISVLQEH----SQDVKHVIWHP-SEALLASSSYDDTVRIWKDY--- 183 (330)
T ss_dssp TSCEEEEEETT------SCEEEEECCTTCCCCEEEEEECCC----SSCEEEEEECS-SSSEEEEEETTSCEEEEEEE---
T ss_pred CCCEEEEEeCC------CEEEEEeccCCCCCeEEEEEeccC----CCceEEEEECC-CCCEEEEEcCCCeEEEEECC---
Confidence 56677777744 469999985432113332211000 11121122222 56778889988764432222
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCe-EEEEEC---CEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCC
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENK-LIHCYK---NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~~~---g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 433 (472)
++.|.++.. +..... .+ .++... +..++++ .+.|.+|+-...... ....++ .+...+...
T Consensus 184 ~~~~~~~~~----~~~h~~-----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~---~~~~~~--~~~~~~~~h 249 (330)
T 2hes_X 184 DDDWECVAV----LNGHEG-----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED---DQQEWV--CEAILPDVH 249 (330)
T ss_dssp TTEEEEEEE----ECCCSS-----CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT---SCEEEE--EEEECCSCC
T ss_pred CCCeeEEEE----ccCCCC-----cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc---ccceeE--Eeeeccccc
Confidence 345666554 322221 11 122221 3444444 478999975422000 000000 011111123
Q ss_pred CCceEEEeecCceEEEeeeccceeEEeec
Q 012060 434 RGAISRIDAGGNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 434 ~~~i~~~~~gg~r~f~~~~~~~~~~vw~~ 462 (472)
.+.|..+++.-+.++++=.+...|.||+.
T Consensus 250 ~~~v~~v~~s~~~~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 250 KRQVYNVAWGFNGLIASVGADGVLAVYEE 278 (330)
T ss_dssp SSCEEEEEECTTSCEEEEETTSCEEEEEE
T ss_pred ccceEEEEEcCCCEEEEEeCCCEEEEEEc
Confidence 45788888876667777777778899974
No 177
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.34 E-value=2.9 Score=40.20 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=55.8
Q ss_pred CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccccccc
Q 012060 337 ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRN 413 (472)
Q Consensus 337 ~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~ 413 (472)
++.+++.|+.++....-|+++ .+-..+.. ..... .-..++. -+|+++++++ +.|.+|+--..
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~----~~~~~-----~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~--- 202 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYED---DSQYIVHS----AKSDV-----EYSSGVLHKDSLLLALYSPDGILDVYNLSSP--- 202 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSS---SCEEEEEC----CCSSC-----CCCEEEECTTSCEEEEECTTSCEEEEESSCT---
T ss_pred CCCEEEEEeCCCcEEEEECCC---CcEEEEEe----cCCCC-----ceEEEEECCCCCEEEEEcCCCEEEEEECCCC---
Confidence 567788899888765444442 22222221 00111 1122332 3577777644 89999986422
Q ss_pred cccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCC
Q 012060 414 RSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 414 ~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~ 465 (472)
+.+ ...|-+ ...+.|+.++| -|..|+..-++ .|-||+....
T Consensus 203 ----~~~-~~~~~~----~h~~~v~~l~fs~~g~~l~s~~~~--~v~iwd~~~~ 245 (343)
T 3lrv_A 203 ----DQA-SSRFPV----DEEAKIKEVKFADNGYWMVVECDQ--TVVCFDLRKD 245 (343)
T ss_dssp ----TSC-CEECCC----CTTSCEEEEEECTTSSEEEEEESS--BEEEEETTSS
T ss_pred ----CCC-ccEEec----cCCCCEEEEEEeCCCCEEEEEeCC--eEEEEEcCCC
Confidence 111 111111 13468999998 46667666644 8999986554
No 178
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=93.17 E-value=0.97 Score=49.20 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=69.4
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcCc--------ccceeEEEEeCCeEEEEecCCCCCcee
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRIY--------RATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~~--------R~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
++.++.||+... . +.+.++|..+ ..|+.-...... .... +++..++.||++..+ ..+
T Consensus 74 ~v~~g~vyv~~~--~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~v~v~~~d----g~l 140 (677)
T 1kb0_A 74 VVVDGIMYVSAS--W------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALWKGKVYVGAWD----GRL 140 (677)
T ss_dssp EEETTEEEEECG--G------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEETTEEEEECTT----SEE
T ss_pred EEECCEEEEECC--C------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCC-CceEECCEEEEEcCC----CEE
Confidence 457899998765 2 2344555443 236554332110 0112 266789999996433 367
Q ss_pred EEEeCCCcccccccccccCCCcccccc--------cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAV--------GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~--------m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
-++|..|.+ ..|+.-.. ....-...++.||++... +..+..+.|..||++|++.+|++...
T Consensus 141 ~alD~~tG~----------~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~-~~~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 141 IALDAATGK----------EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGG-AEYGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp EEEETTTCC----------EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred EEEECCCCC----------EEeeecCCcCcCcCcccccCcEEECCEEEEEecc-cccCCCCEEEEEECCCCcEEEEeccC
Confidence 889999944 23554322 111112358899885432 11223578999999999999999754
No 179
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=93.16 E-value=3.6 Score=44.77 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=82.8
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCccc-cc---cccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVRT-HL---DNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~-~~---~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++.||+... +.|.++| |+. ......-. .. .+..++++.++.||+... +| .+-.+|..+-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg-----~l~AlDa~TG 141 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DG-----RLEAIDAKTG 141 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TS-----EEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---CC-----EEEEEECCCC
Confidence 467774433 4588898 887 33321100 00 001123456788887653 33 3445555433
Q ss_pred --ccccCCC--C-cCcccceeEEEEeCCeEEEEecCC--CCCceeEEEeCCCcccccccccccCCCccccc-c-------
Q 012060 207 --HWTDPSD--P-RIYRATVTAIADSPTTVFSSLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMA-V------- 271 (472)
Q Consensus 207 --~W~~~a~--m-~~~R~~~~ava~l~g~IYAGg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-~------- 271 (472)
.|..... . ....... +-++.++.||+|.... ..-..|-.||+.|.+. .|+.-. +
T Consensus 142 ~~~W~~~~~~~~~~~~~~~~-sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 142 QRAWSVDTRADHKRSYTITG-APRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE----------AWRFYTVPGDPKLPP 210 (689)
T ss_dssp CEEEEEECCSCTTSCCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEEESSCCCTTSCC
T ss_pred CEeeeecCcCCCCCCccccC-CcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE----------EEEecccCCCccccc
Confidence 3654321 0 0011111 2445799999943221 2245789999999442 243210 0
Q ss_pred ----------------------c-----ceeEEecCCeEEEEEEeC------------CCccccceEEEEcCCCCeeeeE
Q 012060 272 ----------------------G-----KLTWIPATGVVLGSAIAW------------GAFGYSGYVRMWDPRSGEVVWE 312 (472)
Q Consensus 272 ----------------------m-----~~~~~~~~g~Lyv~Gg~~------------g~~~~~~sve~yDp~~~~~vW~ 312 (472)
. ....-+-.++||+..+.+ |..-+.++|-.+|++|++++|+
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0 001112578999865432 1111345899999999999999
Q ss_pred EcCC
Q 012060 313 TNEP 316 (472)
Q Consensus 313 ~~~~ 316 (472)
....
T Consensus 291 ~~~~ 294 (689)
T 1yiq_A 291 YQTT 294 (689)
T ss_dssp EESS
T ss_pred eecC
Confidence 8754
No 180
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.16 E-value=3.7 Score=43.59 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=27.1
Q ss_pred cCCeEEEEEEeCC---------CccccceEEEEcCCCCeeeeEEcCC
Q 012060 279 ATGVVLGSAIAWG---------AFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g---------~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..++||+..+... ..-+.++|-++|++|++++|+....
T Consensus 245 ~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~ 291 (571)
T 2ad6_A 245 KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKT 291 (571)
T ss_dssp TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCC
Confidence 4689999655321 1113468999999999999998754
No 181
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.13 E-value=5.8 Score=37.26 Aligned_cols=230 Identities=12% Similarity=0.103 Sum_probs=110.2
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~ 252 (472)
-++...+.|+ .++ ++..||....+...+..+......+.+++... +.+.| |+.+ .+|-.||..+.
T Consensus 19 ~~g~~las~s--~D~-----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D----~~v~iWd~~~~ 87 (297)
T 2pm7_B 19 YYGKRMATCS--SDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVMIWKEENG 87 (297)
T ss_dssp TTSSEEEEEE--TTS-----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT----TEEEEEEBSSS
T ss_pred CCCCEEEEEe--CCC-----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC----CEEEEEEcCCC
Confidence 3577778887 555 34556655433333333322233333355532 55666 6554 47889999873
Q ss_pred ccccccccccCCCccccc--------ccceeEEec-CCeEEEEEEeCCCccccceEEEEcCCCCee--eeEEcCCCCCCC
Q 012060 253 QISSEIGRQSGASSKNMA--------VGKLTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSGEV--VWETNEPGSGRS 321 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~--------~m~~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~--vW~~~~~~~~~~ 321 (472)
+ |..+. ...+.+.+. .+.++++|+.+ +.|.+||.+++.. .-.....
T Consensus 88 ~------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~~~~~~h----- 144 (297)
T 2pm7_B 88 R------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSPIIIDAH----- 144 (297)
T ss_dssp C------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCCEEEECC-----
T ss_pred c------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceeeeeeecc-----
Confidence 2 32221 122333332 26677777643 4799999987630 0011111
Q ss_pred Ccccccccceeeee------------cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEE
Q 012060 322 ARFGDSFADVDVDV------------DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIH 388 (472)
Q Consensus 322 ~R~~~~~~d~~v~~------------~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~ 388 (472)
...+-.++... .++.+++.|+.|+....-|+++- ..+|..... +.... ..+ .|+
T Consensus 145 ---~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~-~~~~~~~~~----l~~H~-----~~V~~v~ 211 (297)
T 2pm7_B 145 ---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLEST----LEGHS-----DWVRDVA 211 (297)
T ss_dssp ---SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETT-TTEEEEEEE----ECCCS-----SCEEEEE
T ss_pred ---cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCC-CceEEEEEE----ecCCC-----CceEEEE
Confidence 00000000011 12568889998876543344321 223444443 22222 122 222
Q ss_pred EEC----CEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEe
Q 012060 389 CYK----NQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVW 460 (472)
Q Consensus 389 ~~~----g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw 460 (472)
..- ++++++++ +.|.+|+.... .... ++..+.. ....+.|..+++- |..|+..- +...|-||
T Consensus 212 ~sp~~~~~~~las~s~D~~v~iWd~~~~------~~~~-~~~~~~~--~~~~~~v~~~~~s~~g~~las~~-~D~~v~lw 281 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDRTCIIWTQDNE------QGPW-KKTLLKE--EKFPDVLWRASWSLSGNVLALSG-GDNKVTLW 281 (297)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESST------TSCC-EEEESSS--SCCSSCEEEEEECSSSCCEEEEE-TTSCEEEE
T ss_pred ECCCCCCceEEEEEECCCcEEEEEeCCC------CCcc-ceeeeec--ccCCCcEEEEEECCCCCEEEEEc-CCCcEEEE
Confidence 221 46777654 78999975321 0000 1101100 0123567777664 55555444 44578999
Q ss_pred ecC
Q 012060 461 ESS 463 (472)
Q Consensus 461 ~~~ 463 (472)
+..
T Consensus 282 ~~~ 284 (297)
T 2pm7_B 282 KEN 284 (297)
T ss_dssp EEC
T ss_pred EEC
Confidence 865
No 182
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.12 E-value=5.9 Score=37.38 Aligned_cols=231 Identities=11% Similarity=0.034 Sum_probs=114.3
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
++.||++.- .. +.+.+||+.+.+-...... ....+++.. ++.||++. .+.+-+||+.+.+
T Consensus 24 ~~~l~~~d~--~~-----~~i~~~d~~~~~~~~~~~~----~~~~~i~~~~dG~l~v~~-----~~~l~~~d~~~g~--- 84 (297)
T 3g4e_A 24 SNSLLFVDI--PA-----KKVCRWDSFTKQVQRVTMD----APVSSVALRQSGGYVATI-----GTKFCALNWKEQS--- 84 (297)
T ss_dssp TTEEEEEET--TT-----TEEEEEETTTCCEEEEECS----SCEEEEEEBTTSSEEEEE-----TTEEEEEETTTTE---
T ss_pred CCEEEEEEC--CC-----CEEEEEECCCCcEEEEeCC----CceEEEEECCCCCEEEEE-----CCeEEEEECCCCc---
Confidence 467888875 22 3567888887653322111 112235544 56788852 2478899998833
Q ss_pred ccccccCCCcccccc------ccee---EEecCCeEEEEEEeCCCc-----cccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 257 EIGRQSGASSKNMAV------GKLT---WIPATGVVLGSAIAWGAF-----GYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~------m~~~---~~~~~g~Lyv~Gg~~g~~-----~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
.+.+.. .... ...-+|.||++....... ...+.|.++|+.... +..... ...+
T Consensus 85 ---------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~~~~-~~~p 151 (297)
T 3g4e_A 85 ---------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---KKYFDQ-VDIS 151 (297)
T ss_dssp ---------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---EEEEEE-ESBE
T ss_pred ---------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE---EEEeec-cccc
Confidence 222211 1111 112478899865433211 023578899986432 111110 0111
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcE---EeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWV---YMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR 398 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~---~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~ 398 (472)
. +.+ ....+..||+.....+.+...|+.. ++.... .+.. +.... + .-.++++ -+|.||++.
T Consensus 152 n-gi~-----~spdg~~lyv~~~~~~~i~~~~~d~-~~G~~~~~~~~~~----~~~~~-~---~p~g~~~d~~G~lwva~ 216 (297)
T 3g4e_A 152 N-GLD-----WSLDHKIFYYIDSLSYSVDAFDYDL-QTGQISNRRSVYK----LEKEE-Q---IPDGMCIDAEGKLWVAC 216 (297)
T ss_dssp E-EEE-----ECTTSCEEEEEEGGGTEEEEEEECT-TTCCEEEEEEEEE----CCGGG-C---EEEEEEEBTTSCEEEEE
T ss_pred c-ceE-----EcCCCCEEEEecCCCCcEEEEeccC-CCCcccCcEEEEE----CCCCC-C---CCCeeEECCCCCEEEEE
Confidence 1 222 2445667888876554433222210 122111 1111 11100 0 1234554 357999984
Q ss_pred --CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEeeeccc-eeEEeecCCCCcce
Q 012060 399 --GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVSREDVE-GIEVWESSNLSGVV 469 (472)
Q Consensus 399 --g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~~~-~~~vw~~~~~~~~~ 469 (472)
++.|.+|++. +.++.+. .+ .....++.++||| ++||||-.... .=|.+...+.+|+|
T Consensus 217 ~~~~~v~~~d~~--------tG~~~~~-----i~-~p~~~~t~~~f~g~d~~~L~vt~~~~~~~~~~~~~~p~~G~~ 279 (297)
T 3g4e_A 217 YNGGRVIRLDPV--------TGKRLQT-----VK-LPVDKTTSCCFGGKNYSEMYVTCARDGMDPEGLLRQPEAGGI 279 (297)
T ss_dssp ETTTEEEEECTT--------TCCEEEE-----EE-CSSSBEEEEEEESGGGCEEEEEEBCTTCCHHHHHHCTTTTCE
T ss_pred cCCCEEEEEcCC--------CceEEEE-----EE-CCCCCceEEEEeCCCCCEEEEEcCCcCCChhHccCCCCCceE
Confidence 5679999874 1112122 11 1234799999997 59999976432 11233445667765
No 183
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=93.10 E-value=5.6 Score=37.04 Aligned_cols=113 Identities=7% Similarity=-0.085 Sum_probs=56.7
Q ss_pred eeeeecCCCCccccCCCCcCc--ccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccc
Q 012060 197 LSSSRHVASAHWTDPSDPRIY--RATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG 272 (472)
Q Consensus 197 sve~ydp~t~~W~~~a~m~~~--R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m 272 (472)
++..+|+.+.+-...-.+... +.. +++.. ++ .||+.... ...|.+||+.+.+++..+.....+. ....+.
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~ 85 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPM--VPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPEE-RVKSLF 85 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCC--CEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTTE-EEECTT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCcc--ceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCccc-cccccc
Confidence 456677666543322111110 111 24443 34 68884322 3578999999866544333210000 000233
Q ss_pred ceeEEecCCeEEEEEEeC--CCccc---cceEEEEcCCCCeeeeEEcC
Q 012060 273 KLTWIPATGVVLGSAIAW--GAFGY---SGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 273 ~~~~~~~~g~Lyv~Gg~~--g~~~~---~~sve~yDp~~~~~vW~~~~ 315 (472)
...+.+-+..||++.... ++..+ .+.|..||+.++++++....
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 344444455788764210 11101 36899999999997777654
No 184
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.91 E-value=7 Score=37.67 Aligned_cols=192 Identities=11% Similarity=0.138 Sum_probs=92.7
Q ss_pred ceeeccCCcEEEeee--CceEEeeccc-CCCCCcc--ccccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 134 FTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVR--THLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 134 ~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R--~~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
+...|....++++++ |.|..||... ....... .+-+.+.++++. ++.+++.|+ .+| .+..||....
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~-----~i~iwd~~~~ 151 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS--IRG-----ATTLRDFSGS 151 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE--TTT-----EEEEEETTSC
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe--CCC-----EEEEEECCCC
Confidence 333444214553433 4588888443 2221111 123344455554 346777776 454 4556666655
Q ss_pred ccccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEE
Q 012060 207 HWTDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Ly 284 (472)
..............+.+++... +.+++ |+.+ ..|..||... +++..+.. +......+.+.+....++
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~-~~~~~~~~------h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST----GRLLLLGLDG-HEIFKEKL------HKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT----SEEEEEETTS-CEEEEEEC------SSSCEEEEEECSSCTTEE
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC----CCEEEEECCC-CEEEEecc------CCCcEEEEEECCCCCCEE
Confidence 4443332221112222344443 44444 6544 4788999843 32222211 011113344444444366
Q ss_pred EEEEeCCCccccceEEEEcCCC----CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 285 GSAIAWGAFGYSGYVRMWDPRS----GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 285 v~Gg~~g~~~~~~sve~yDp~~----~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
++|+. .+.|..||.++ ++++-.. .. ...+..++....++.++++|+.++.+..-|+++-
T Consensus 221 ~s~~~------d~~i~iwd~~~~~~~~~~~~~~-~~--------~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 221 ATSSV------DATVKLWDLRNIKDKNSYIAEM-PH--------EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp EEEET------TSEEEEEEGGGCCSTTCEEEEE-EC--------SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred EEEeC------CCEEEEEeCCCCCcccceEEEe-cC--------CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 77663 34799999998 5533333 11 1111112223326677888888877655455543
No 185
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.91 E-value=4.6 Score=43.70 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=83.9
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCccc-cc--c-ccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVRT-HL--D-NITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~-~~--~-~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++.||+... |.|.++| |+. ...+.... .. . +..++++.++.||+... +| .+-++|..+-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg-----~l~alD~~tG 137 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DG-----RLIALDAKTG 137 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TS-----EEEEEETTTC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CC-----EEEEEECCCC
Confidence 467775433 4588888 887 33322110 00 0 00123456788887653 33 3455665433
Q ss_pred --ccccCCCCc--CcccceeEEEEeCCeEEEEecCC--CCCceeEEEeCCCcccccccccccCCCccccc----cc----
Q 012060 207 --HWTDPSDPR--IYRATVTAIADSPTTVFSSLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMA----VG---- 272 (472)
Q Consensus 207 --~W~~~a~m~--~~R~~~~ava~l~g~IYAGg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~----~m---- 272 (472)
.|.....-. ...... +-.+.++.||+|..+. .....|-.||+.|.+. .|+.-. |.
T Consensus 138 ~~~W~~~~~~~~~~~~~~~-~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~~~~~~~p~~~~~ 206 (668)
T 1kv9_A 138 KAIWSQQTTDPAKPYSITG-APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL----------AWRFYTVPGDPALPYE 206 (668)
T ss_dssp CEEEEEECSCTTSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEEESSCCCTTSCCS
T ss_pred CEeeeeccCCCCCcceecC-CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE----------EEEecccCCCCCcccc
Confidence 366532110 111111 2445689999943221 2245799999999442 243311 00
Q ss_pred ---------------------------ceeEEecCCeEEEEEEeCC------------CccccceEEEEcCCCCeeeeEE
Q 012060 273 ---------------------------KLTWIPATGVVLGSAIAWG------------AFGYSGYVRMWDPRSGEVVWET 313 (472)
Q Consensus 273 ---------------------------~~~~~~~~g~Lyv~Gg~~g------------~~~~~~sve~yDp~~~~~vW~~ 313 (472)
....-+..+++|+..+.+. ..-+.++|-.+|++|++++|+.
T Consensus 207 ~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~ 286 (668)
T 1kv9_A 207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY 286 (668)
T ss_dssp SHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred ccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe
Confidence 0011124689998654321 1113468999999999999998
Q ss_pred cCC
Q 012060 314 NEP 316 (472)
Q Consensus 314 ~~~ 316 (472)
...
T Consensus 287 ~~~ 289 (668)
T 1kv9_A 287 QVT 289 (668)
T ss_dssp ESS
T ss_pred ecC
Confidence 754
No 186
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=92.60 E-value=6.8 Score=36.70 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=88.2
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-C---CCCCccccccccceeeee-CCe-EEEEcCcCCCCceecceeeeecC-
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-S---HSVTVRTHLDNITSIRHV-WSD-VAAVGSDYSSGIHFYDLSSSRHV- 203 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~---~m~~~R~~~~~v~~v~~l-~~~-lYavGG~~~~g~~~l~sve~ydp- 203 (472)
++...|. +.++++.+ |.|..||... . .......+-..+.++++. ++. .+++|+ .+| .+..||.
T Consensus 16 ~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg-----~i~~wd~~ 87 (342)
T 1yfq_A 16 DIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT--VQG-----EILKVDLI 87 (342)
T ss_dssp EEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE--TTS-----CEEEECSS
T ss_pred EEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc--CCC-----eEEEEEec
Confidence 3444454 44443433 3477777433 2 011111222334445544 566 677777 454 4566776
Q ss_pred CCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCC---------cccccccccccCCCcccccccc
Q 012060 204 ASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKST---------LQISSEIGRQSGASSKNMAVGK 273 (472)
Q Consensus 204 ~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t---------~~~~~~~~~~~~~~W~~v~~m~ 273 (472)
.+.+-..+.... ....+.+++.. ++.|++++.+ ..|-.||..+ .+++..+.. . .....
T Consensus 88 ~~~~~~~~~~~~-~~~~v~~l~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~----~~v~~ 155 (342)
T 1yfq_A 88 GSPSFQALTNNE-ANLGICRICKYGDDKLIAASWD----GLIEVIDPRNYGDGVIAVKNLNSNNTKV---K----NKIFT 155 (342)
T ss_dssp SSSSEEECBSCC-CCSCEEEEEEETTTEEEEEETT----SEEEEECHHHHTTBCEEEEESCSSSSSS---C----CCEEE
T ss_pred cCCceEeccccC-CCCceEEEEeCCCCEEEEEcCC----CeEEEEcccccccccccccCCeeeEEee---C----CceEE
Confidence 655543333210 12223235555 4445556544 4788999887 554443332 0 01111
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeec--CCeEEEEcccCCCc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVD--ELTLFKICSKSGDI 350 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~--~~~iy~vGg~~g~~ 350 (472)
+.+. .+. +++|+. .+.|..||.++ .......... .....-.+ ++.. ++.++++|+.++..
T Consensus 156 ~~~~--~~~-l~~~~~------d~~i~i~d~~~~~~~~~~~~~~---~~~~~i~~-----i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 156 MDTN--SSR-LIVGMN------NSQVQWFRLPLCEDDNGTIEES---GLKYQIRD-----VALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp EEEC--SSE-EEEEES------TTEEEEEESSCCTTCCCEEEEC---SCSSCEEE-----EEECSGGGCEEEEEETTSEE
T ss_pred EEec--CCc-EEEEeC------CCeEEEEECCccccccceeeec---CCCCceeE-----EEECCCCCCEEEEEecCCcE
Confidence 2222 223 445542 35799999998 5422222221 00111112 1222 56788889888765
Q ss_pred cccccc
Q 012060 351 AMADLR 356 (472)
Q Consensus 351 ~~~dl~ 356 (472)
..-|++
T Consensus 219 ~i~~~~ 224 (342)
T 1yfq_A 219 AVEFFD 224 (342)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 543333
No 187
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.58 E-value=6.8 Score=41.78 Aligned_cols=190 Identities=13% Similarity=0.155 Sum_probs=94.3
Q ss_pred EEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++.. ++.+.+ |+.+ .+|-.||..+.+.+..+.. +...-..+.+. -++...++|+.+ ++|.+
T Consensus 436 v~~s~~g~~l~sgs~D----g~v~vwd~~~~~~~~~~~~------h~~~v~~~~~s-~~~~~l~s~s~D------~~i~i 498 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWD----GELRLWDLAAGVSTRRFVG------HTKDVLSVAFS-LDNRQIVSASRD------RTIKL 498 (694)
T ss_dssp EEECTTSSEEEEEETT----SEEEEEETTTTEEEEEEEC------CSSCEEEEEEC-TTSSCEEEEETT------SCEEE
T ss_pred EEECCCCCEEEEEeCC----CcEEEEECCCCcceeEEeC------CCCCEEEEEEe-CCCCEEEEEeCC------CEEEE
Confidence 4444 345555 6544 4788999988543222211 00011122233 345555666643 46999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC-CeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE-LTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~-~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
||.+... .+....... .....-.+ ++....+ ..+++.|+.++....-|+++. ..... +.....
T Consensus 499 wd~~~~~-~~~~~~~~~-~h~~~v~~---~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-----~~~~~----~~~h~~-- 562 (694)
T 3dm0_A 499 WNTLGEC-KYTISEGGE-GHRDWVSC---VRFSPNTLQPTIVSASWDKTVKVWNLSNC-----KLRST----LAGHTG-- 562 (694)
T ss_dssp ECTTSCE-EEEECSSTT-SCSSCEEE---EEECSCSSSCEEEEEETTSCEEEEETTTC-----CEEEE----ECCCSS--
T ss_pred EECCCCc-ceeeccCCC-CCCCcEEE---EEEeCCCCcceEEEEeCCCeEEEEECCCC-----cEEEE----EcCCCC--
Confidence 9987664 344443311 11111111 1112211 246778888876544344321 12221 111111
Q ss_pred CCcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeecccee
Q 012060 381 NGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGI 457 (472)
Q Consensus 381 ~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~ 457 (472)
.=..++. -+|+++++++ +.|-+|+-... +.+ +. + .....|..+.+--|+.+++-....+|
T Consensus 563 --~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-------~~~-~~-~------~~~~~v~~~~~sp~~~~l~~~~~~~i 625 (694)
T 3dm0_A 563 --YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-------KKL-YS-L------EANSVIHALCFSPNRYWLCAATEHGI 625 (694)
T ss_dssp --CEEEEEECTTSSEEEEEETTSBCEEEETTTT-------EEE-EC-C------BCSSCEEEEEECSSSSEEEEEETTEE
T ss_pred --CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------ceE-EE-e------cCCCcEEEEEEcCCCcEEEEEcCCCE
Confidence 1112222 2466666654 78999985321 111 11 0 12346888888877777776777889
Q ss_pred EEeecC
Q 012060 458 EVWESS 463 (472)
Q Consensus 458 ~vw~~~ 463 (472)
.||+..
T Consensus 626 ~iwd~~ 631 (694)
T 3dm0_A 626 KIWDLE 631 (694)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999864
No 188
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.22 E-value=8.3 Score=36.85 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=38.5
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++.++++|+.+ ++|.+||.++++++....... . ..+..++.. -++.+++.|+.++....-|+++
T Consensus 138 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~--~-----~~i~~~~~~-pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 138 NTEYFIWADNR------GTIGFQSYEDDSQYIVHSAKS--D-----VEYSSGVLH-KDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp -CCEEEEEETT------CCEEEEESSSSCEEEEECCCS--S-----CCCCEEEEC-TTSCEEEEECTTSCEEEEESSC
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEEecCC--C-----CceEEEEEC-CCCCEEEEEcCCCEEEEEECCC
Confidence 56777777744 469999999998644433221 1 112122223 3788899999988765445543
No 189
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=92.14 E-value=4.8 Score=43.19 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=28.3
Q ss_pred cCCeEEEEEEeCCC---------ccccceEEEEcCCCCeeeeEEcCC
Q 012060 279 ATGVVLGSAIAWGA---------FGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~---------~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..++||+..+...+ .-+.++|-++|++|++++|+....
T Consensus 251 ~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 251 GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 67899997664321 113468999999999999998754
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=91.79 E-value=11 Score=37.40 Aligned_cols=121 Identities=9% Similarity=-0.139 Sum_probs=67.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEe--cC----CCCCceeEEEeCC
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSL--VC----PHKENSVLLIDKS 250 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg--~~----~~~l~sVE~YDp~ 250 (472)
..+|+.-+..++. ..++..||+.+.+-. ..++.-... + ++.. +.+||+.. +. +...++|-+||+.
T Consensus 33 ~~~yv~~~~~~~~---~~~v~v~D~~t~~~~--~~i~~g~~p-~-i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 33 RRSYINLPAHHSA---IIQQWVLDAGSGSIL--GHVNGGFLP-N-PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CEEEEeCCcccCC---ccEEEEEECCCCeEE--EEecCCCCC-C-eEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4577765310211 117888998877633 222222222 2 4444 34699932 11 1235789999999
Q ss_pred Ccccccccccc-cCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE
Q 012060 251 TLQISSEIGRQ-SGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE 312 (472)
Q Consensus 251 t~~~~~~~~~~-~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~ 312 (472)
|++++.+|.-. ......-..|-...+.+-+..||++.-. ..++|-.+| .+++++-+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCEEeE
Confidence 98877665321 0000111123344555667888887321 135788999 99987766
No 191
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=91.77 E-value=5.6 Score=37.30 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=33.2
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
++.++++|+.+ +.|..||.++++.+.+.... ....-.+ + + -++.+++.|+.||.
T Consensus 262 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~----h~~~v~~---~--~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 262 RHKFLYTAGSD------GIISCWNLQTRKKIKNFAKF----NEDSVVK---I--A-CSDNILCLATSDDT 315 (342)
T ss_dssp TTCCEEEEETT------SCEEEEETTTTEEEEECCCC----SSSEEEE---E--E-ECSSEEEEEEECTH
T ss_pred CCCEEEEecCC------ceEEEEcCccHhHhhhhhcc----cCCCceE---e--c-CCCCeEEEEecCCc
Confidence 45555666533 46999999999966654422 0111122 2 3 67888889988864
No 192
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.74 E-value=7.1 Score=41.57 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=27.4
Q ss_pred cCCeEEEEEEeCC-----------------CccccceEEEEcCCCCeeeeEEcCC
Q 012060 279 ATGVVLGSAIAWG-----------------AFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g-----------------~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..++||+..+... ..-+.++|-.+|++|++++|+....
T Consensus 256 ~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~ 310 (582)
T 1flg_A 256 ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT 310 (582)
T ss_dssp TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS
T ss_pred CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC
Confidence 4689999766311 1113468999999999999998643
No 193
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.56 E-value=9.9 Score=36.36 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
++.+.++|+. .++|.+||.++++.+-+.... ...+.+++... ++...+.|+.++....-|+
T Consensus 87 ~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~h--------~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 87 ENCFAISSSW------DKTLRLWDLRTGTTYKRFVGH--------QSEVYSVAFSP-DNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp STTEEEEEET------TSEEEEEETTSSCEEEEEECC--------CSCEEEEEECS-STTEEEEEETTSCEEEEES
T ss_pred CCCEEEEEcC------CCcEEEEECCCCcEEEEEcCC--------CCcEEEEEECC-CCCEEEEEcCCCEEEEEec
Confidence 5666667663 357999999999866666544 12222223333 5566678888876554343
No 194
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.31 E-value=10 Score=35.99 Aligned_cols=185 Identities=12% Similarity=0.130 Sum_probs=88.5
Q ss_pred EEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++.. ++...+ |+.+ .+|-.||..+.+++..+... -. +...+.+. -++.++++|+.+ ++|..
T Consensus 71 ~~~s~dg~~l~s~s~D----~~v~~wd~~~~~~~~~~~~h----~~--~v~~~~~~-~~~~~l~s~s~D------~~i~v 133 (319)
T 3frx_A 71 CTLTADGAYALSASWD----KTLRLWDVATGETYQRFVGH----KS--DVMSVDID-KKASMIISGSRD------KTIKV 133 (319)
T ss_dssp EEECTTSSEEEEEETT----SEEEEEETTTTEEEEEEECC----SS--CEEEEEEC-TTSCEEEEEETT------SCEEE
T ss_pred EEECCCCCEEEEEeCC----CEEEEEECCCCCeeEEEccC----CC--cEEEEEEc-CCCCEEEEEeCC------CeEEE
Confidence 4443 344444 6544 47899999996543332210 00 11222222 356666777644 46999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeee-----cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV-----DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS 376 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~-----~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~ 376 (472)
||.+... +-+..... ..+..+.... .++.+++.|+.++....-|++. ...... +...
T Consensus 134 wd~~~~~-~~~~~~h~--------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~----~~~h 195 (319)
T 3frx_A 134 WTIKGQC-LATLLGHN--------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-----FQIEAD----FIGH 195 (319)
T ss_dssp EETTSCE-EEEECCCS--------SCEEEEEECCC------CCEEEEEETTSCEEEEETTT-----TEEEEE----ECCC
T ss_pred EECCCCe-EEEEeccC--------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-----chhhee----ecCC
Confidence 9997654 33333220 1111111111 1345677888887654333332 222222 1111
Q ss_pred CCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec
Q 012060 377 SGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED 453 (472)
Q Consensus 377 ~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~ 453 (472)
.. .-..++. -+|+++++++ +.|.+|+-... +..+. + .....|..++|--|.-+++=-.
T Consensus 196 ~~----~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~--------~~~~~-~------~~~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 196 NS----NINTLTASPDGTLIASAGKDGEIMLWNLAAK--------KAMYT-L------SAQDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp CS----CEEEEEECTTSSEEEEEETTCEEEEEETTTT--------EEEEE-E------ECCSCEEEEEECSSSSEEEEEE
T ss_pred CC----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEE-e------cCCCcEEEEEEcCCCCEEEEEc
Confidence 11 0112222 2466666654 78999986421 11111 1 1123577777765544444444
Q ss_pred cceeEEeec
Q 012060 454 VEGIEVWES 462 (472)
Q Consensus 454 ~~~~~vw~~ 462 (472)
..++.||.-
T Consensus 257 ~~~i~v~~~ 265 (319)
T 3frx_A 257 ATGIKVFSL 265 (319)
T ss_dssp TTEEEEEEE
T ss_pred CCCcEEEEe
Confidence 567888863
No 195
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=91.19 E-value=16 Score=38.23 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=87.4
Q ss_pred cceeeccCCcEEEeeeCceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCcccc
Q 012060 133 TFTASSDDGSLWIAHGGQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 133 a~r~~~~~g~l~va~GG~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~ 210 (472)
++...|+...+..+.++.|..+|... .......-+-..+.++++ -++.+.|.|+ .+| ++..+|..+.+...
T Consensus 23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~--~d~-----~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD--VHG-----NVRIWDTTQTTHIL 95 (611)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEESSSTTCCE
T ss_pred EEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEe--CCC-----CEEEeECCCCccee
Confidence 34444552333333334465555432 222222223333444443 3577788887 454 45556654332211
Q ss_pred CCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEE
Q 012060 211 PSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAI 288 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg 288 (472)
...+......+.+++... +. |.+++.+......|-.||..+ +..++.. +.-....+.+.+-...++++|+
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~~l~g------h~~~v~~v~f~p~~~~~l~s~s 167 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTG------QARAMNSVDFKPSRPFRIISGS 167 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCC------CSSCEEEEEECSSSSCEEEEEE
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--CcceecC------CCCCceEEEECCCCCeEEEEEe
Confidence 111111112232355543 44 444554433344677777433 1111110 0011123334444445677777
Q ss_pred eCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 289 AWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 289 ~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
.+ ++|.+||.++.++.-+.... ...+-.++... ++.+++.|+.|+...
T Consensus 168 ~D------~~v~lwd~~~~~~~~~l~~H--------~~~V~~v~fsp-dg~~las~s~D~~i~ 215 (611)
T 1nr0_A 168 DD------NTVAIFEGPPFKFKSTFGEH--------TKFVHSVRYNP-DGSLFASTGGDGTIV 215 (611)
T ss_dssp TT------SCEEEEETTTBEEEEEECCC--------SSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred CC------CeEEEEECCCCeEeeeeccc--------cCceEEEEECC-CCCEEEEEECCCcEE
Confidence 44 46999999888744444332 11122222233 678888999887654
No 196
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=90.77 E-value=19 Score=38.23 Aligned_cols=155 Identities=17% Similarity=0.063 Sum_probs=73.6
Q ss_pred cceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEE
Q 012060 171 ITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLI 247 (472)
Q Consensus 171 v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~Y 247 (472)
+.++++. ++.+.+.|+ .+| ++..||..+.+-. ..+......+.+++.. ++. |..|+.+ .+|-.|
T Consensus 433 v~~v~~s~~g~~l~sgs--~Dg-----~v~vwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~D----~~i~iw 499 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGS--WDG-----ELRLWDLAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRD----RTIKLW 499 (694)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETT----SCEEEE
T ss_pred EEEEEECCCCCEEEEEe--CCC-----cEEEEECCCCcce--eEEeCCCCCEEEEEEeCCCCEEEEEeCC----CEEEEE
Confidence 4344432 567777777 455 4556665544311 1111112222235544 344 4446544 467888
Q ss_pred eCCCcccccccccccCCCcccccccceeEEecC-CeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccc
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIPAT-GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGD 326 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~-g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~ 326 (472)
|........ +... ..-+.-....+.+.+.. ..++++|+.+ ++|.+||.++++++-+..... .
T Consensus 500 d~~~~~~~~-~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~h~--------~ 562 (694)
T 3dm0_A 500 NTLGECKYT-ISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLAGHT--------G 562 (694)
T ss_dssp CTTSCEEEE-ECSS--TTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEECCCS--------S
T ss_pred ECCCCccee-eccC--CCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEcCCC--------C
Confidence 876522100 0000 00000001112222221 2455666643 469999999998665554331 1
Q ss_pred cccceeeeecCCeEEEEcccCCCccccccc
Q 012060 327 SFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 327 ~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
.+..++... ++.+++.|+.++....-|++
T Consensus 563 ~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 563 YVSTVAVSP-DGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp CEEEEEECT-TSSEEEEEETTSBCEEEETT
T ss_pred CEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Confidence 121222233 67888899988875543443
No 197
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=90.73 E-value=1.3 Score=48.36 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=67.5
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcC-----cc---cceeEEEEeCCeEEEEecCCCCCcee
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRI-----YR---ATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~-----~R---~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
++.++.||+... .. .+-++|..+ ..|+.-..... .. ... ++++.++.||++..+ ..+
T Consensus 67 ~v~~g~vyv~~~--~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~v~v~~~d----g~l 133 (689)
T 1yiq_A 67 IVVDGVMYTTGP--FS------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR-GVAVWKGKVYVGVLD----GRL 133 (689)
T ss_dssp EEETTEEEEECG--GG------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEETTEEEEECTT----SEE
T ss_pred EEECCEEEEEcC--CC------eEEEEECCCCceeEEEcCCCCccccccccccCCCC-ccEEECCEEEEEccC----CEE
Confidence 457899998765 22 344455432 33654322210 00 112 256789999996433 367
Q ss_pred EEEeCCCcccccccccccCCCcccccc--------cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAV--------GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~--------m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
-++|.+| |+ ..|+.-.. ..-.-...++++|+..+. +..+..+.|..||++|++.+|+...
T Consensus 134 ~AlDa~T-------G~---~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 134 EAIDAKT-------GQ---RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGG-AEFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp EEEETTT-------CC---EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEECCC-------CC---EeeeecCcCCCCCCccccCCcEEECCEEEEEeCC-CccCCCCEEEEEECCCCcEEEEecc
Confidence 8999999 44 23554321 000112358899884321 1112357899999999999999863
No 198
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=90.42 E-value=1.2 Score=48.29 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=67.4
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcCc--------ccceeEEEEeCCeEEEEecCCCCCce
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRIY--------RATVTAIADSPTTVFSSLVCPHKENS 243 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~~--------R~~~~ava~l~g~IYAGg~~~~~l~s 243 (472)
.++.++.||+... . ..+.++|..+ ..|+.-...... -..- ++++.++.||++..+ ..
T Consensus 62 P~v~~g~vyv~~~--~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~d----g~ 128 (668)
T 1kv9_A 62 PLFHDGVIYTSMS--W------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALWGDKVYVGTLD----GR 128 (668)
T ss_dssp CEEETTEEEEEEG--G------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEEBTEEEEECTT----SE
T ss_pred CEEECCEEEEECC--C------CeEEEEECCCChhceEECCCCCccccccccccCCcc-ceEEECCEEEEEcCC----CE
Confidence 3457889998765 2 2344444432 235543221100 0012 256678999996433 36
Q ss_pred eEEEeCCCcccccccccccCCCccccccc-------ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAVG-------KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~m-------~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
+-++|+.| |+ -.|+.-... .-.-...+++||+... ++..+..+.|..||++|++++|+...
T Consensus 129 l~alD~~t-------G~---~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~-~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 129 LIALDAKT-------GK---AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNG-GAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEEETTT-------CC---EEEEEECSCTTSSCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEECCC-------CC---EeeeeccCCCCCcceecCCCEEECCEEEEeCC-CCCcCCCCEEEEEECCCCcEEEEecc
Confidence 88999999 44 335543210 0001235889988433 11112357899999999999999864
No 199
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=90.27 E-value=1.5 Score=46.71 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=70.5
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecC-C--CCccccCCCCcCc--------ccceeEEEEeCCeEEEEecCCCCCc
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHV-A--SAHWTDPSDPRIY--------RATVTAIADSPTTVFSSLVCPHKEN 242 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp-~--t~~W~~~a~m~~~--------R~~~~ava~l~g~IYAGg~~~~~l~ 242 (472)
.++.++.||+... +++ .+.++|+ . +..|+.-...... ....+ +++.++.||++..+ .
T Consensus 58 P~v~~g~vyv~~~--~~~-----~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~d----g 125 (571)
T 2ad6_A 58 PLVIGDMMYVHSA--FPN-----NTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRG-LAYGAGQIVKKQAN----G 125 (571)
T ss_dssp CEEETTEEEEECS--TTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCC-CEEETTEEEEECTT----S
T ss_pred cEEECCEEEEEeC--CCC-----EEEEEeCCCCccEEEEEcCCCCccccccccccccccc-cEEECCEEEEEeCC----C
Confidence 3457999998765 222 4556665 3 3347654332110 01122 66789999996332 3
Q ss_pred eeEEEeCCCcccccccccccCCCccccccc-------ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVG-------KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m-------~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.+-++|+.| |+ ..|+.-... ...-...+++||+.... +..+..+.|..||+++++.+|+...
T Consensus 126 ~l~alD~~t-------G~---~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 126 HLLALDAKT-------GK---INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSG-AELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEEETTT-------CC---EEEEEECCCGGGTCBCCSCCEEETTEEEEECBC-GGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCC-------CC---EEEEecCCCCCccceeccCCEEECCEEEEEecC-CccCCCCEEEEEECCCCcEEEEEcc
Confidence 678899999 44 336543211 00112258899885431 1111246899999999999999875
Q ss_pred C
Q 012060 316 P 316 (472)
Q Consensus 316 ~ 316 (472)
.
T Consensus 195 ~ 195 (571)
T 2ad6_A 195 T 195 (571)
T ss_dssp S
T ss_pred C
Confidence 4
No 200
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=90.11 E-value=14 Score=35.68 Aligned_cols=60 Identities=12% Similarity=-0.007 Sum_probs=34.0
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
.+.+.++|+ .++ ++..+|..+.+-.. .+.. ...+.+++...+.++++. .++|..||..+.
T Consensus 70 ~~~~~~~~~--~d~-----~v~iWd~~~~~~~~--~~~~-~~~v~~v~~~~~~~~~~~-----~~~i~i~d~~~~ 129 (355)
T 3vu4_A 70 TNYVAFVTG--VKE-----VVHIWDDVKKQDVS--RIKV-DAPVKDLFLSREFIVVSY-----GDVISVFKFGNP 129 (355)
T ss_dssp SSEEEEECS--STT-----EEEEEETTTTEEEE--EEEC-SSCEEEEEECSSEEEEEE-----TTEEEEEESSTT
T ss_pred CCEEEEEEC--Ccc-----EEEEEECCCCcEEE--EEEC-CCceEEEEEcCCEEEEEE-----cCEEEEEECCCC
Confidence 455667777 333 67777877664322 1111 122334666666666642 347899999884
No 201
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=89.30 E-value=12 Score=36.36 Aligned_cols=193 Identities=11% Similarity=-0.009 Sum_probs=88.8
Q ss_pred ceeeccCCcEEEeeeC---ceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 134 FTASSDDGSLWIAHGG---QISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 134 ~r~~~~~g~l~va~GG---~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++..|+...+.+|.|+ .|..+|... ....... +.+.+.++++ -++.+++.|+ .++ +..++..+.+-
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s--~~~------~~~~~~~~~~~ 209 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT--GSS------LEVISTVTGSC 209 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC--SSC------EEEEETTTCCE
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc--cee------EEEEEeccCcc
Confidence 3344553344445553 377777332 2111111 2233445554 3567777776 333 23344333332
Q ss_pred ccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGS 286 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~ 286 (472)
............+.+++.. ++..++ +..++.....+-.||..+.+......+.....-..+ ..+.+. -+|.++|+
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V--~~~~~S-pdg~~las 286 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI--TSMDVD-MKGELAVL 286 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE--EEEEEC-TTSCEEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe--EeEEEC-CCCCceEE
Confidence 2111111122233335544 455555 544443334566677655220000000000000001 111222 47788888
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccc
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAM 352 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~ 352 (472)
|+.+ ++|.+||.++++++-+...-- ...+.+|+-.- ++++.+-|+.|+....
T Consensus 287 gs~D------~~V~iwd~~~~~~~~~~~~gH-------~~~V~~v~fSp-dg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 287 ASND------NSIALVKLKDLSMSKIFKQAH-------SFAITEVTISP-DSTYVASVSAANTIHI 338 (365)
T ss_dssp EETT------SCEEEEETTTTEEEEEETTSS-------SSCEEEEEECT-TSCEEEEEETTSEEEE
T ss_pred EcCC------CEEEEEECCCCcEEEEecCcc-------cCCEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 8744 469999999999766654220 11222233344 6778888998876543
No 202
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=89.04 E-value=14 Score=36.32 Aligned_cols=69 Identities=10% Similarity=-0.067 Sum_probs=41.2
Q ss_pred CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCC
Q 012060 228 PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 228 ~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~ 306 (472)
++.+.| |+.+ ++|-.||..+.+++..+-.. . -+.+...|.+.+..++++|+. .++|.+||.++
T Consensus 155 d~~~las~s~D----~tv~~Wd~~~~~~~~~~~~~--~----~~v~~v~~~p~~~~~l~~~~~------d~~v~~wd~~t 218 (393)
T 4gq1_A 155 AEQVIASVGDD----CTLIIWRLTDEGPILAGYPL--S----SPGISVQFRPSNPNQLIVGER------NGNIRIFDWTL 218 (393)
T ss_dssp EEEEEEEEETT----SEEEEEEEETTEEEEEEEEC--S----SCEEEEEEETTEEEEEEEEET------TSEEEEEETTC
T ss_pred CCCEEEEEECC----CeEEEEECCCCceeeeecCC--C----CCcEEEEECCCCCceEEecCC------CCEEEEEECCC
Confidence 678888 6554 58889998774432221110 1 122456677666667777763 34799999999
Q ss_pred CeeeeE
Q 012060 307 GEVVWE 312 (472)
Q Consensus 307 ~~~vW~ 312 (472)
++...+
T Consensus 219 ~~~~~~ 224 (393)
T 4gq1_A 219 NLSAEE 224 (393)
T ss_dssp CC----
T ss_pred Cccccc
Confidence 874433
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=88.63 E-value=5.3 Score=41.04 Aligned_cols=126 Identities=8% Similarity=-0.103 Sum_probs=73.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC--CeEEEE--ecC----CCCCceeEEEeCC
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP--TTVFSS--LVC----PHKENSVLLIDKS 250 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~--g~IYAG--g~~----~~~l~sVE~YDp~ 250 (472)
..+|+.-. ...... +++..+|+.+++-.. ..+..+.- + ++... .+||++ +.. +...++|.+||+.
T Consensus 85 ~~vyV~n~--~~~~~~-~~VsVID~~t~~vv~--~I~vG~~P-g-ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 85 RRVYIQDP--AHFAAI-TQQFVIDGSTGRILG--MTDGGFLP-H-PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp TEEEEEEC--TTTCSS-EEEEEEETTTTEEEE--EEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CEEEEECC--CcCCCC-CeEEEEECCCCEEEE--EEECCCCC-c-eEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 45777754 111111 788999998876432 22222222 3 55443 359993 211 1135789999999
Q ss_pred CcccccccccccCCCcc-cccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 251 TLQISSEIGRQSGASSK-NMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~-~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
|++++.+|.-.....+. -..|-.....+-+..|||+.. . ..++|-.+|+.+++++-+..-+
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~--~---~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF--S---PAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC--S---SSCEEEEEETTTTEEEEEEECC
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec--C---CCCeEEEEECCCCeEEEEEEcC
Confidence 99887766321000010 012334444556678999742 1 1458999999999988776654
No 204
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=88.37 E-value=4.6 Score=37.91 Aligned_cols=129 Identities=9% Similarity=0.152 Sum_probs=69.3
Q ss_pred eCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccc---ceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 227 SPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG---KLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 227 l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m---~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
-++.||+|. .+ +-+||+ +.+ ..|+.-.+. ..... .++.||++.. .+.+.+||
T Consensus 69 ~~g~l~v~t-----~~-l~~~d~-~g~----------~~~~~~~~~~~~~~~~~-~~~~l~v~t~-------~~~l~~~d 123 (330)
T 3hxj_A 69 KDGTIYFGS-----DK-VYAINP-DGT----------EKWRFDTKKAIVSDFTI-FEDILYVTSM-------DGHLYAIN 123 (330)
T ss_dssp TTTEECCSS-----CE-EEEECC-CGG----------GGGGSCC-----CCEEE-ETTEEEEECT-------TSEEEEEC
T ss_pred cCCcEEEec-----Cc-EEEECC-CCc----------EEEEEECCCCcccCceE-ECCEEEEEec-------CCEEEEEc
Confidence 377899842 12 889998 422 225543221 11112 3888888531 34799999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCc
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGE 383 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~ 383 (472)
+. ++..|+...+.. ...++ +...++.||+ |..++.+...|.. +.-.|..-.+ ...
T Consensus 124 ~~-g~~~~~~~~~~~-----~~~~~----~~~~~g~l~v-gt~~~~l~~~d~~--g~~~~~~~~~------~~~------ 178 (330)
T 3hxj_A 124 TD-GTEKWRFKTKKA-----IYATP----IVSEDGTIYV-GSNDNYLYAINPD--GTEKWRFKTN------DAI------ 178 (330)
T ss_dssp TT-SCEEEEEECSSC-----CCSCC----EECTTSCEEE-ECTTSEEEEECTT--SCEEEEEECS------SCC------
T ss_pred CC-CCEEEEEcCCCc-----eeeee----EEcCCCEEEE-EcCCCEEEEECCC--CCEeEEEecC------CCc------
Confidence 99 888899876521 11121 1222777885 4444433332322 2333544322 111
Q ss_pred CeEEEE-ECCEEEEecCCeEEEee
Q 012060 384 NKLIHC-YKNQVFVGRGGSLEVWS 406 (472)
Q Consensus 384 ~~~~~~-~~g~l~~~~g~~~~v~~ 406 (472)
-..++. .+|.||+.. +.|-.|+
T Consensus 179 ~~~~~~d~~g~l~v~t-~~l~~~d 201 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS-DKVYAIN 201 (330)
T ss_dssp CSCCEECTTCCEEEES-SSEEEEC
T ss_pred eeeeEEcCCCEEEEEe-CEEEEEC
Confidence 112233 478888888 8888887
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=87.48 E-value=32 Score=36.40 Aligned_cols=155 Identities=14% Similarity=0.232 Sum_probs=80.5
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc-CCCcccccccccC--CCCcEEeecCCCC
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK-SGDIAMADLRNLG--EDPWVYMEDKNPS 372 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~-~g~~~~~dl~s~e--~d~W~~~~~~~~~ 372 (472)
.+.|..+|..++++++...--..+..+..|..| ..-.++.+|+.+-. ++.....|..... ...|..+..
T Consensus 363 sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~----~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~---- 434 (567)
T 1qks_A 363 RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF----VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS---- 434 (567)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE----EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE----
T ss_pred CCeEEEEECCCCcEEEEEeccCcCCCCccceee----ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE----
Confidence 568999999999988776430212222223322 22335778877632 2332222222211 223988876
Q ss_pred cccCCCCCCCcCeEEEEE--CCEEEEec--------CCeEEEeeccccccccccCCcceeecccccccc--CCCCceEEE
Q 012060 373 MISSSGNNNGENKLIHCY--KNQVFVGR--------GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVED--SGRGAISRI 440 (472)
Q Consensus 373 m~~~~~~~~~~~~~~~~~--~g~l~~~~--------g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~i~~~ 440 (472)
+..... ....|..+ +.+|||.. .++|.||+--..+ ..+..+. |..--+++-.. ..+..+.++
T Consensus 435 i~~~g~----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 508 (567)
T 1qks_A 435 FPALGG----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT-GDGSDPE-FKTLPIAEWAGITEGQPRVVQG 508 (567)
T ss_dssp EECSCS----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC-CSSSCCC-EEEECHHHHHTCCSSCCEEEEE
T ss_pred EecCCC----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc-ccccCCC-cEEeccccccccCCCCcceEee
Confidence 443322 12344444 34899975 3589999875330 0001111 22211111000 124478888
Q ss_pred eec--CceEEEeee----ccceeEEeecCC
Q 012060 441 DAG--GNRLFVSRE----DVEGIEVWESSN 464 (472)
Q Consensus 441 ~~g--g~r~f~~~~----~~~~~~vw~~~~ 464 (472)
+|= |++++++.. +.+-|-|.++..
T Consensus 509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 509 EFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred eECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 885 999999864 466677776543
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=87.27 E-value=16 Score=36.90 Aligned_cols=112 Identities=11% Similarity=-0.080 Sum_probs=62.0
Q ss_pred ceeeeecCCCCccccCCCCcCcccceeEEEEe-C-CeEEE-Eec-C----CCCCceeEEEeCCCcccccccccccCCCcc
Q 012060 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P-TTVFS-SLV-C----PHKENSVLLIDKSTLQISSEIGRQSGASSK 267 (472)
Q Consensus 196 ~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~-g~IYA-Gg~-~----~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~ 267 (472)
+.+..+|+.+.+-.. ..+.-.. .+ +++. + .+||+ ... . +...++|.+||+.|++++.+|.-..+....
T Consensus 59 ~~V~ViD~~t~~v~~--~I~vG~~-P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIG--MIDGGFL-PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp EEEEEEETTTTEEEE--EEEECSS-CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CEEEEEECCCCeEEE--EEECCCC-Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 567777777665332 1111111 12 3333 3 35999 311 1 113578999999999887776331100000
Q ss_pred c-ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 268 N-MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 268 ~-v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
. ..|-.....+-+..||++... ..++|-.+|..+++++-+..-|
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEEEEEEECC
T ss_pred cCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcEEEEEECC
Confidence 0 012223334456778987421 1358999999999988777544
No 207
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=86.54 E-value=2.7 Score=45.18 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecC-C--CCccccCCCCcC-----ccc---ceeEEEE--eCCe----EEEEec
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHV-A--SAHWTDPSDPRI-----YRA---TVTAIAD--SPTT----VFSSLV 236 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp-~--t~~W~~~a~m~~-----~R~---~~~ava~--l~g~----IYAGg~ 236 (472)
.++.++.||+... +++ .+.++|. . +..|+.-..... .++ .- ++++ .++. ||++..
T Consensus 58 P~v~~g~vyv~~~--~~~-----~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~-g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTS--FPN-----NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp CEEETTEEEEECS--TTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECT
T ss_pred cEEECCEEEEEeC--CCC-----EEEEEeCCCCCcEEEEECCCCCcccccccccccccc-ceEEEecCCcceeEEEEEcC
Confidence 3457999998875 322 3445555 3 234665433211 011 11 2555 6888 999633
Q ss_pred CCCCCceeEEEeCCCcccccccccccCCCccccccc--------ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 237 CPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG--------KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 237 ~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m--------~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+ ..+-++|..| |+ ..|+.-... ..+ ...+++||+... ++..+..+.|..||++|++
T Consensus 130 d----g~l~AlDa~T-------G~---~~W~~~~~~~~~~~~~~ssP-~v~~g~V~vg~~-g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 130 D----GNVAALNAET-------GE---TVWKVENSDIKVGSTLTIAP-YVVKDKVIIGSS-GAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp T----SEEEEEETTT-------CC---EEEEEECCCGGGTCBCCSCC-EEETTEEEECCB-CGGGTCCCEEEEEETTTCC
T ss_pred C----CEEEEEECCC-------CC---EEEeecCCCCCccceeecCC-EEECCEEEEEec-ccccCCCCeEEEEECCCCc
Confidence 3 3577899999 44 336643211 111 225889988432 1111235689999999999
Q ss_pred eeeEEcCC
Q 012060 309 VVWETNEP 316 (472)
Q Consensus 309 ~vW~~~~~ 316 (472)
.+|++...
T Consensus 194 ~~W~~~~~ 201 (599)
T 1w6s_A 194 QVWRAYAT 201 (599)
T ss_dssp EEEEEESS
T ss_pred EEEEEcCC
Confidence 99998754
No 208
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=86.19 E-value=11 Score=35.18 Aligned_cols=111 Identities=8% Similarity=0.082 Sum_probs=59.9
Q ss_pred eeeecCCC-CccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccc---
Q 012060 198 SSSRHVAS-AHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK--- 273 (472)
Q Consensus 198 ve~ydp~t-~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~--- 273 (472)
+.+||+.. ..|....+-. .... .+..++.||+|..+ ..+-+||+. .+ ..|+.-.+..
T Consensus 80 l~~~d~~g~~~~~~~~~~~-~~~~---~~~~~~~l~v~t~~----~~l~~~d~~-g~----------~~~~~~~~~~~~~ 140 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTKKA-IVSD---FTIFEDILYVTSMD----GHLYAINTD-GT----------EKWRFKTKKAIYA 140 (330)
T ss_dssp EEEECCCGGGGGGSCC------CC---EEEETTEEEEECTT----SEEEEECTT-SC----------EEEEEECSSCCCS
T ss_pred EEEECCCCcEEEEEECCCC-cccC---ceEECCEEEEEecC----CEEEEEcCC-CC----------EEEEEcCCCceee
Confidence 66777642 3465433221 1122 33448999996433 367788987 33 1254432211
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
.....-++.||++. ..+.+.+||+. ++.+|+...+. .. -.++ +...++.||+..
T Consensus 141 ~~~~~~~g~l~vgt-------~~~~l~~~d~~-g~~~~~~~~~~----~~-~~~~----~~d~~g~l~v~t 194 (330)
T 3hxj_A 141 TPIVSEDGTIYVGS-------NDNYLYAINPD-GTEKWRFKTND----AI-TSAA----SIGKDGTIYFGS 194 (330)
T ss_dssp CCEECTTSCEEEEC-------TTSEEEEECTT-SCEEEEEECSS----CC-CSCC----EECTTCCEEEES
T ss_pred eeEEcCCCEEEEEc-------CCCEEEEECCC-CCEeEEEecCC----Cc-eeee----EEcCCCEEEEEe
Confidence 11222478888852 12579999999 88889987551 11 1121 122478888655
No 209
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=85.94 E-value=26 Score=33.78 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=43.7
Q ss_pred cCCeEEEEEEeCCCccccce-EEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGY-VRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~s-ve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
-++.++++|+.+ ++ |..||.++++++-++.... . ...+.+++... ++.+++.|+.++....-|++.
T Consensus 205 ~~g~~l~s~s~d------~~~v~iwd~~~~~~~~~~~~g~---h---~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 205 RKSDMVATCSQD------GTIIRVFKTEDGVLVREFRRGL---D---RADVVDMKWST-DGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TTSSEEEEEETT------CSEEEEEETTTCCEEEEEECTT---C---CSCEEEEEECT-TSCEEEEEETTCEEEEEESSC
T ss_pred CCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCC---C---CCcEEEEEECC-CCCEEEEEECCCEEEEEEccC
Confidence 367777877743 45 9999999999777665210 0 11222222233 677788888887655445544
Q ss_pred cCCCCcEE
Q 012060 358 LGEDPWVY 365 (472)
Q Consensus 358 ~e~d~W~~ 365 (472)
-..+++..
T Consensus 272 ~~~~~~~~ 279 (355)
T 3vu4_A 272 DQDNKRHA 279 (355)
T ss_dssp CSCCCSEE
T ss_pred CCCccccc
Confidence 33334443
No 210
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=85.71 E-value=9.1 Score=40.06 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=78.7
Q ss_pred cccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEE--Ee-CC-eEEE-EecCCCCCce
Q 012060 169 DNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIA--DS-PT-TVFS-SLVCPHKENS 243 (472)
Q Consensus 169 ~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava--~l-~g-~IYA-Gg~~~~~l~s 243 (472)
+.+.++++..+...+.|+ .+| ++-.||..+.. .....+......+.+++ .. ++ .++| |+.+ .+
T Consensus 267 ~~v~sv~~s~~~~lasgs--~Dg-----tV~lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D----~t 334 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGF--KNG-----FVAEFDLTDPE-VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD----GY 334 (524)
T ss_dssp TCEEEEEESSSSEEEEEE--TTS-----EEEEEETTBCS-SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT----SE
T ss_pred CCEEEEEecCCCeEEEEe--CCC-----EEEEEECCCCC-CceEEeecccccEEEEEEEcCCCCCeEEEEeccC----Ce
Confidence 345556655666777777 565 45566665431 11111111122333342 22 34 6778 6544 47
Q ss_pred eEEEeCCCccccccc-ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 244 VLLIDKSTLQISSEI-GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 244 VE~YDp~t~~~~~~~-~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
|-.||..+.+++..+ ++... .....+.+.+ ++..+++|+. .++|.+||++++.++.+....
T Consensus 335 vklWD~~~~~~~~~~~~~~~~-----~~v~~v~fsp-~~~~l~s~~~------d~tv~lwd~~~~~~~~~l~gH------ 396 (524)
T 2j04_B 335 FYIFNPKDIATTKTTVSRFRG-----SNLVPVVYCP-QIYSYIYSDG------ASSLRAVPSRAAFAVHPLVSR------ 396 (524)
T ss_dssp EEEECGGGHHHHCEEEEECSC-----CSCCCEEEET-TTTEEEEECS------SSEEEEEETTCTTCCEEEEEC------
T ss_pred EEEEECCCCCccccccccccc-----CcccceEeCC-CcCeEEEeCC------CCcEEEEECcccccceeeecC------
Confidence 889999874432211 11100 0012345555 3555676652 347999999998865555533
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcc
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
...+.+|+... ++.+++.|+.|+...
T Consensus 397 --~~~V~sva~Sp-~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 397 --ETTITAIGVSR-LHPMVLAGSADGSLI 422 (524)
T ss_dssp --SSCEEEEECCS-SCCBCEEEETTTEEE
T ss_pred --CCceEEEEeCC-CCCeEEEEECCCEEE
Confidence 12333344444 556677888887644
No 211
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=85.04 E-value=35 Score=34.58 Aligned_cols=137 Identities=11% Similarity=0.247 Sum_probs=67.7
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
-++.++++++.+ +.|..||.. ++.+-+.... ...+.+++... ++++.+.|+.++....-| .
T Consensus 436 ~d~~~l~~~~~d------~~v~~w~~~-~~~~~~~~~~--------~~~v~~~~~sp-d~~~las~~~d~~i~iw~---~ 496 (577)
T 2ymu_A 436 PDDQTIASASDD------KTVKLWNRN-GQLLQTLTGH--------SSSVRGVAFSP-DGQTIASASDDKTVKLWN---R 496 (577)
T ss_dssp TTSSEEEEEETT------SEEEEEETT-SCEEEEEECC--------SSCEEEEEECT-TSCEEEEEETTSEEEEEE---T
T ss_pred CCCCEEEEEcCC------CEEEEEECC-CCEEEEEcCC--------CCCEEEEEEcC-CCCEEEEEeCCCEEEEEc---C
Confidence 356666776633 479999964 4444444433 11122222333 677788888776543211 1
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCC
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRG 435 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 435 (472)
+. ..+.. +..... .=..|+. -+|++++++ .+.|.+|+.. . +..+ -+.++ .+
T Consensus 497 -~~--~~~~~----~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--------~-~~~~-~~~~h-----~~ 550 (577)
T 2ymu_A 497 -NG--QLLQT----LTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNRN--------G-QLLQ-TLTGH-----SS 550 (577)
T ss_dssp -TS--CEEEE----EECCSS----CEEEEEECTTSSCEEEEETTSEEEEECTT--------S-CEEE-EEECC-----SS
T ss_pred -CC--CEEEE----EeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEeCC--------C-CEEE-EEcCC-----CC
Confidence 11 12221 111110 0112222 245555544 3789999842 1 1112 13333 45
Q ss_pred ceEEEeec--CceEEEeeeccceeEEee
Q 012060 436 AISRIDAG--GNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 436 ~i~~~~~g--g~r~f~~~~~~~~~~vw~ 461 (472)
.|+.++|- |..|+..-. -..|-||.
T Consensus 551 ~v~~~~fs~dg~~l~s~~~-D~~i~~Wd 577 (577)
T 2ymu_A 551 SVWGVAFSPDGQTIASASS-DKTVKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEET-TSCEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeC-CCEEEEeC
Confidence 79988886 445554444 45688995
No 212
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=84.81 E-value=36 Score=34.50 Aligned_cols=138 Identities=13% Similarity=0.268 Sum_probs=69.9
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
-++..+++|+.+ +.|..||. +++.+.+.... ...+.+++... ++.+.+.|+.++....-|+
T Consensus 395 ~dg~~l~~~~~d------~~v~~~~~-~~~~~~~~~~~--------~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~--- 455 (577)
T 2ymu_A 395 PDGQTIASASDD------KTVKLWNR-NGQLLQTLTGH--------SSSVWGVAFSP-DDQTIASASDDKTVKLWNR--- 455 (577)
T ss_dssp TTSSCEEEEETT------SEEEEECT-TCCEEEEEECC--------SSCEEEEEECT-TSSEEEEEETTSEEEEEET---
T ss_pred CCCCEEEEEeCC------CEEEEEeC-CCCEEEEecCC--------CCCeEEEEECC-CCCEEEEEcCCCEEEEEEC---
Confidence 356666776633 47999995 45544555443 11122222333 6677778887765432121
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCC
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRG 435 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 435 (472)
... .+.. +..... .-..++. -++++++++ ++.|.+|+.- .+. .+.+.++ .+
T Consensus 456 ~~~---~~~~----~~~~~~----~v~~~~~spd~~~las~~~d~~i~iw~~~---------~~~-~~~~~~h-----~~ 509 (577)
T 2ymu_A 456 NGQ---LLQT----LTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNRN---------GQL-LQTLTGH-----SS 509 (577)
T ss_dssp TSC---EEEE----EECCSS----CEEEEEECTTSCEEEEEETTSEEEEEETT---------SCE-EEEEECC-----SS
T ss_pred CCC---EEEE----EcCCCC----CEEEEEEcCCCCEEEEEeCCCEEEEEcCC---------CCE-EEEEeCC-----CC
Confidence 111 1111 111111 0111222 256666654 4789999842 122 2223333 45
Q ss_pred ceEEEeec--CceEEEeeeccceeEEeec
Q 012060 436 AISRIDAG--GNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 436 ~i~~~~~g--g~r~f~~~~~~~~~~vw~~ 462 (472)
.|+.++|- |..|+ +=.+...|-||+.
T Consensus 510 ~v~~l~~s~dg~~l~-s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIA-SASDDKTVKLWNR 537 (577)
T ss_dssp CEEEEEECTTSSCEE-EEETTSEEEEECT
T ss_pred CEEEEEEcCCCCEEE-EEECcCEEEEEeC
Confidence 79988885 44444 4445567999984
No 213
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=84.81 E-value=23 Score=32.36 Aligned_cols=196 Identities=9% Similarity=0.141 Sum_probs=94.6
Q ss_pred EEEe-CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 224 IADS-PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 224 va~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
+++. ++.||++... ...|-+||+.. +.+..+.......-....|..+....-++.||++... ..+.|.+|
T Consensus 35 v~~~~~g~l~v~~~~---~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~~~ 105 (286)
T 1q7f_A 35 VAVNAQNDIIVADTN---NHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIY 105 (286)
T ss_dssp EEECTTCCEEEEEGG---GTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEE
T ss_pred EEECCCCCEEEEECC---CCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEEEE
Confidence 5543 5689984221 34788999874 3232222100000011112222222357899998531 13579999
Q ss_pred cCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCC
Q 012060 303 DPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNG 382 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~ 382 (472)
|+ +++.+++...+. ...+ .+ +++.. ++.||+....++.+...|. +......+.. ...+.
T Consensus 106 d~-~g~~~~~~~~~~-~~~~---~~---i~~~~-~g~l~v~~~~~~~i~~~~~---~g~~~~~~~~-~~~~~-------- 164 (286)
T 1q7f_A 106 NQ-YGQFVRKFGATI-LQHP---RG---VTVDN-KGRIIVVECKVMRVIIFDQ---NGNVLHKFGC-SKHLE-------- 164 (286)
T ss_dssp CT-TSCEEEEECTTT-CSCE---EE---EEECT-TSCEEEEETTTTEEEEECT---TSCEEEEEEC-TTTCS--------
T ss_pred CC-CCcEEEEecCcc-CCCc---eE---EEEeC-CCCEEEEECCCCEEEEEcC---CCCEEEEeCC-CCccC--------
Confidence 95 555555553321 1111 12 22333 6789987654443222111 1111122221 00000
Q ss_pred cCeEEEEE-CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccc-ee
Q 012060 383 ENKLIHCY-KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVE-GI 457 (472)
Q Consensus 383 ~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~-~~ 457 (472)
.-.+|++- +|+||++. ++.|.+|+.-. +..+. +-.. ..-..+..|++-. ++|||+-...+ .|
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---------~~~~~-~~~~---g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEG---------QYLRQ-IGGE---GITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETTC---------CEEEE-ESCT---TTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCCC---------CEEEE-EccC---CccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 12344443 47899985 57899998521 11111 1111 0113567777743 37888876665 88
Q ss_pred EEeec
Q 012060 458 EVWES 462 (472)
Q Consensus 458 ~vw~~ 462 (472)
.+|+.
T Consensus 232 ~~~~~ 236 (286)
T 1q7f_A 232 TIFTQ 236 (286)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88873
No 214
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=83.92 E-value=4.1 Score=43.47 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=66.8
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcC---ccc---ceeEEEEeCCeEEEEecCCCCCceeE
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRI---YRA---TVTAIADSPTTVFSSLVCPHKENSVL 245 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~---~R~---~~~ava~l~g~IYAGg~~~~~l~sVE 245 (472)
.++.++.||+... .++ +.++|..+ ..|+.-..... ..+ .- +++..++.||++..+ ..+-
T Consensus 64 P~v~~g~vyv~~~--~~~------v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~~~~~v~~~t~d----g~l~ 130 (582)
T 1flg_A 64 AIVSDGVIYVTAS--YSR------LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIYGDKVFFGTLD----ASVV 130 (582)
T ss_dssp CEEETTEEEEEET--TTE------EEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEETTEEEEEETT----TEEE
T ss_pred cEEECCEEEEEcC--CCC------EEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEEECCEEEEEeCC----CEEE
Confidence 3457999999876 332 44555432 33655332211 001 12 256789999996433 3678
Q ss_pred EEeCCCcccccccccccCCCccccccc--------ceeEEecCC------eEEEEEEeCCCccccceEEEEcCCCCeeee
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVG--------KLTWIPATG------VVLGSAIAWGAFGYSGYVRMWDPRSGEVVW 311 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m--------~~~~~~~~g------~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW 311 (472)
++|++| |+ -.|+.-... ..+.+ .++ +||+... ++.....+.|..||+++++++|
T Consensus 131 AlD~~T-------G~---~~W~~~~~~~~~~~~~~~sP~v-~~~~~~G~~~v~vg~~-~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 131 ALNKNT-------GK---VVWKKKFADHGAGYTMTGAPTI-VKDGKTGKVLLIHGSS-GDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp EEESSS-------CC---EEEEEECSCGGGTCBCCSCCEE-EECTTTCCEEEEECCB-CGGGCCBCEEEEECTTTCCEEE
T ss_pred EEECCC-------CC---EEeeecCCCCCcCcccccCCEE-eCCCcCCcEEEEEecc-ccccCCCCEEEEEECCCCCEEe
Confidence 999999 44 336543211 11122 345 7776322 1111235789999999999999
Q ss_pred EEcC
Q 012060 312 ETNE 315 (472)
Q Consensus 312 ~~~~ 315 (472)
+...
T Consensus 199 ~~~~ 202 (582)
T 1flg_A 199 MRPF 202 (582)
T ss_dssp EEES
T ss_pred ecCC
Confidence 8754
No 215
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=83.67 E-value=29 Score=32.54 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=37.5
Q ss_pred CceeEEEeCCCcccccccccccCCCccccccc----ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVG----KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m----~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
-+.|-.+|++|.+ -.|+.-..- ......-+|.||+++ .+.|.+||| +++.+|++..+
T Consensus 14 ~~~v~~~d~~tG~----------~~w~~~~~~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 14 WNKIAIINKDTKE----------IVWEYPLEKGWECNSVAATKAGEILFSY--------SKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CSEEEEEETTTTE----------EEEEEECCTTCCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEEECC
T ss_pred CCEEEEEECCCCe----------EEEEeCCCccCCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEEcCC
Confidence 3577899999944 236654321 111222477777731 246999999 89999999975
No 216
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=83.29 E-value=25 Score=31.58 Aligned_cols=223 Identities=11% Similarity=-0.012 Sum_probs=107.8
Q ss_pred CCeEEE-EcCcCCCCceecceeeeecCCCCccccCC--CCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAA-VGSDYSSGIHFYDLSSSRHVASAHWTDPS--DPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYa-vGG~~~~g~~~l~sve~ydp~t~~W~~~a--~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~ 253 (472)
++.||+ ... .+ ..+.+||+.+....... ....++ +++.. ++.||++.. .+.|-+||+.+..
T Consensus 34 ~g~l~v~~~~--~~-----~~i~~~~~~~~~~~~~~~~~~~~p~----~i~~~~~g~l~v~~~----~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 34 AGNVYVTSEG--MY-----GRVVKLATGSTGTTVLPFNGLYQPQ----GLAVDGAGTVYVTDF----NNRVVTLAAGSNN 98 (270)
T ss_dssp TCCEEEEECS--SS-----CEEEEECC-----EECCCCSCCSCC----CEEECTTCCEEEEET----TTEEEEECTTCSC
T ss_pred CCCEEEEccC--CC-----CcEEEecCCCcccceEeeCCcCCcc----eeEECCCCCEEEEcC----CCEEEEEeCCCce
Confidence 578888 433 12 24556776655433322 222222 25554 567999432 2478899998733
Q ss_pred cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
.. .+.. . ....|..+.. .-+|.||++.. ..+.|.+||+.+.. ...........+ .+ +++
T Consensus 99 ~~-~~~~---~--~~~~p~~i~~-~~~g~l~v~~~------~~~~i~~~~~~~~~--~~~~~~~~~~~p---~~---i~~ 157 (270)
T 1rwi_B 99 QT-VLPF---D--GLNYPEGLAV-DTQGAVYVADR------GNNRVVKLAAGSKT--QTVLPFTGLNDP---DG---VAV 157 (270)
T ss_dssp CE-ECCC---C--SCSSEEEEEE-CTTCCEEEEEG------GGTEEEEECTTCCS--CEECCCCSCCSC---CC---EEE
T ss_pred Ee-eeec---C--CcCCCcceEE-CCCCCEEEEEC------CCCEEEEEECCCce--eEeeccccCCCc---ee---EEE
Confidence 10 0000 0 0001111111 23678998753 23478999988776 333322111111 22 223
Q ss_pred eecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeecccc
Q 012060 334 DVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVRE 410 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~ 410 (472)
.. ++.||+....++.+...|.. +..-..... ..+ . .-.+|+.- +|.||++. ++.|.+|+.-..
T Consensus 158 ~~-~g~l~v~~~~~~~i~~~~~~---~~~~~~~~~--~~~---~-----~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 158 DN-SGNVYVTDTDNNRVVKLEAE---SNNQVVLPF--TDI---T-----APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECTT---TCCEEECCC--SSC---C-----SEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred eC-CCCEEEEECCCCEEEEEecC---CCceEeecc--cCC---C-----CceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 33 67899876544433221211 111111110 001 1 13345554 46999986 578999876311
Q ss_pred ccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecCC
Q 012060 411 GRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 411 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~ 464 (472)
.. .. . .......+..+++.. ++|||+-.....|.+++...
T Consensus 224 --------~~-~~-~----~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 224 --------TS-TV-L----PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp --------CC-EE-C----CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred --------cc-ee-e----ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 00 11 0 001124578888863 37999988888888887543
No 217
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=82.82 E-value=36 Score=33.00 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++.++++| .+ +.|..||.++....+.....-..........+..++....+..+++.|+.++....-|+++
T Consensus 188 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 188 DYETYLSA-DD------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp TSSEEEEE-CS------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEe-CC------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 56666665 33 4799999995543344321100000000111222223333337889999998766556554
No 218
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=82.64 E-value=50 Score=34.46 Aligned_cols=258 Identities=13% Similarity=0.080 Sum_probs=122.0
Q ss_pred eEEeeccc-CCCCCccccccccceeeeeCC--eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHVWS--DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~--~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
...+.|.. ....+...+-..+.++++-.+ .+++.|+ .++ ++-.||..+.+.. ..+......+.+++..
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s--~D~-----~v~lwd~~~~~~~--~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS--DDN-----TVAIFEGPPFKFK--STFGEHTKFVHSVRYN 199 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE--TTS-----CEEEEETTTBEEE--EEECCCSSCEEEEEEC
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEe--CCC-----eEEEEECCCCeEe--eeeccccCceEEEEEC
Confidence 45566765 333333333344444554332 3577777 454 3445564443322 1222223333345554
Q ss_pred -CCeEEE-EecCCCCCceeEEEeCCCcccccccccccC-CCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 228 -PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSG-ASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 228 -~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~-~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
++.++| |+.+ .+|-.||..+.+++..+....- ..-+.-....+.+.+ ++.++++|+. .++|.+||.
T Consensus 200 pdg~~las~s~D----~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~------D~~v~lWd~ 268 (611)
T 1nr0_A 200 PDGSLFASTGGD----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASA------DKTIKIWNV 268 (611)
T ss_dssp TTSSEEEEEETT----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEET------TSEEEEEET
T ss_pred CCCCEEEEEECC----CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeC------CCeEEEEeC
Confidence 456777 6554 4788999888554443311000 000111112233333 5666777763 357999999
Q ss_pred CCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcC
Q 012060 305 RSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGEN 384 (472)
Q Consensus 305 ~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~ 384 (472)
++++++-+..... .......+ +.. .+..++.++.++....-|++ +. ..... +.... ..
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~~~-----~~~-~~~~l~s~s~d~~i~~~~~~---~~--~~~~~----~~gh~-----~~ 326 (611)
T 1nr0_A 269 ATLKVEKTIPVGT--RIEDQQLG-----IIW-TKQALVSISANGFINFVNPE---LG--SIDQV----RYGHN-----KA 326 (611)
T ss_dssp TTTEEEEEEECCS--SGGGCEEE-----EEE-CSSCEEEEETTCCEEEEETT---TT--EEEEE----ECCCS-----SC
T ss_pred CCCceeeeecCCC--CccceeEE-----EEE-cCCEEEEEeCCCcEEEEeCC---CC--CcceE----EcCCC-----CC
Confidence 9998554443220 00000111 222 45556666666653321211 11 11111 11111 01
Q ss_pred e-EEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEe
Q 012060 385 K-LIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVW 460 (472)
Q Consensus 385 ~-~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw 460 (472)
. .++. -+|+.++++ .+.|.+|+-... .. .+-+ .....+.|..+++-.+..+++=.....+.+|
T Consensus 327 v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~--------~~-~~~~----~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w 393 (611)
T 1nr0_A 327 ITALSSSADGKTLFSADAEGHINSWDISTG--------IS-NRVF----PDVHATMITGIKTTSKGDLFTVSWDDHLKVV 393 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC--------CE-EECS----SCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------ce-eeec----ccCCcceEEEEEECCCCcEEEEEcCCceEEe
Confidence 1 1221 145544443 488999985321 11 1111 1123457888888555555666666789999
Q ss_pred ecC
Q 012060 461 ESS 463 (472)
Q Consensus 461 ~~~ 463 (472)
+..
T Consensus 394 ~~~ 396 (611)
T 1nr0_A 394 PAG 396 (611)
T ss_dssp CSS
T ss_pred ecC
Confidence 854
No 219
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=82.51 E-value=11 Score=34.93 Aligned_cols=54 Identities=13% Similarity=-0.021 Sum_probs=33.3
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
.++|..||+.+++++++...+. .. + ...+++....+..||+.+..++.+...|+
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~--~~---~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 63 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIAD--AG---P-TPMVPMVAPGGRIAYATVNKSESLVKIDL 63 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTT--CT---T-CCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEEcCC--CC---C-CccceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 4589999999999888776441 00 0 11233345556688988876655443343
No 220
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=82.47 E-value=30 Score=31.88 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=31.1
Q ss_pred ECCEEEEecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEeeec
Q 012060 390 YKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVSRED 453 (472)
Q Consensus 390 ~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~ 453 (472)
-+|+||++.++.|.+|++- ++ ++++ + + ...+ ++.++||+ ++||++-.+
T Consensus 227 ~~G~l~v~~~~~v~~~~~~--------g~-~~~~-~----~-~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 227 AGGLIWASAGDGVHVLTPD--------GD-ELGR-V----L-TPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp TTSCEEEEETTEEEEECTT--------SC-EEEE-E----E-CSSC-CCEEEEESTTSCEEEEEETT
T ss_pred CCCCEEEEcCCeEEEECCC--------CC-EEEE-E----E-CCCC-ceeEEEECCCCCEEEEEcCC
Confidence 3689999999999999863 11 1121 1 1 1223 88888864 489998654
No 221
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=82.37 E-value=29 Score=31.66 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=47.9
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
++|-.||..|.+.+..+.-..... .| ..+.+. -++..+++|+.+ ++|.+||.++++++.+....-
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~--~V--~~v~~~-~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~~~h~---- 109 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGE--YI--SSVAWI-KEGNYLAVGTSS------AEVQLWDVQQQKRLRNMTSHS---- 109 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTC--CE--EEEEEC-TTSSEEEEEETT------SEEEEEETTTTEEEEEEECCS----
T ss_pred CEEEEEECCCCCEEEEEEecCCCC--eE--EEEEEC-CCCCEEEEEECC------CcEEEeecCCceeEEEecCcc----
Confidence 478899999855333221100000 01 122233 356666777743 479999999999887776441
Q ss_pred CcccccccceeeeecCCeEEEEcccCCC
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
.+. . .....+.+.+.|+.++.
T Consensus 110 ~~~-~------~~~~~~~~l~s~~~~~~ 130 (318)
T 4ggc_A 110 ARV-G------SLSWNSYILSSGSRSGH 130 (318)
T ss_dssp SCE-E------EEEEETTEEEEEETTSE
T ss_pred ceE-E------EeecCCCEEEEEecCCc
Confidence 111 1 12335667777777654
No 222
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=81.66 E-value=29 Score=31.15 Aligned_cols=137 Identities=12% Similarity=-0.018 Sum_probs=68.4
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccC--CCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP--SDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~--a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
++.+|+... .+ ..+.+||+.+...... ..+..++ +++.. ++.||++... .+.|.+||+.+.+.
T Consensus 118 ~g~l~v~~~--~~-----~~i~~~~~~~~~~~~~~~~~~~~p~----~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 118 QGAVYVADR--GN-----NRVVKLAAGSKTQTVLPFTGLNDPD----GVAVDNSGNVYVTDTD---NNRVVKLEAESNNQ 183 (270)
T ss_dssp TCCEEEEEG--GG-----TEEEEECTTCCSCEECCCCSCCSCC----CEEECTTCCEEEEEGG---GTEEEEECTTTCCE
T ss_pred CCCEEEEEC--CC-----CEEEEEECCCceeEeeccccCCCce----eEEEeCCCCEEEEECC---CCEEEEEecCCCce
Confidence 678888754 22 2455667665544322 2222222 25554 5789994221 35789999987331
Q ss_pred ccccccccCCCccc-ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 255 SSEIGRQSGASSKN-MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 255 ~~~~~~~~~~~W~~-v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
... .... ..|..+. ..-+|.||++.. ..+.|.+||+..... .. .... .-..-.+ +++
T Consensus 184 ~~~-------~~~~~~~p~~i~-~d~~g~l~v~~~------~~~~v~~~~~~~~~~-~~-~~~~---~~~~p~~---i~~ 241 (270)
T 1rwi_B 184 VVL-------PFTDITAPWGIA-VDEAGTVYVTEH------NTNQVVKLLAGSTTS-TV-LPFT---GLNTPLA---VAV 241 (270)
T ss_dssp EEC-------CCSSCCSEEEEE-ECTTCCEEEEET------TTSCEEEECTTCSCC-EE-CCCC---SCSCEEE---EEE
T ss_pred Eee-------cccCCCCceEEE-ECCCCCEEEEEC------CCCcEEEEcCCCCcc-ee-eccC---CCCCcee---EEE
Confidence 110 0000 1111111 124678998753 134699999987752 22 2111 0011122 223
Q ss_pred eecCCeEEEEcccCCCcc
Q 012060 334 DVDELTLFKICSKSGDIA 351 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~~~ 351 (472)
.. ++.||+....++...
T Consensus 242 ~~-~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVV 258 (270)
T ss_dssp CT-TCCEEEEEGGGTEEE
T ss_pred CC-CCCEEEEECCCCEEE
Confidence 33 568998887665543
No 223
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=81.01 E-value=33 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
++|..||+.+++++-...... . ...+..++... ++...+.|+.|+...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~---~---~~~V~~v~~~~-~~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQ---P---GEYISSVAWIK-EGNYLAVGTSSAEVQ 92 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCS---T---TCCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEEecC---C---CCeEEEEEECC-CCCEEEEEECCCcEE
Confidence 479999999998665554331 1 11122222333 677888999887644
No 224
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=79.68 E-value=65 Score=33.94 Aligned_cols=236 Identities=11% Similarity=0.017 Sum_probs=116.9
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-C-CeEEEEecCCCCCceeEEEeCC--Ccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P-TTVFSSLVCPHKENSVLLIDKS--TLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~-g~IYAGg~~~~~l~sVE~YDp~--t~~ 253 (472)
++.+|++.. .+ +++..+|+.+.+-.. .......-++ ++.. + .++|+++. .+.|-+||+. +.+
T Consensus 166 ~~~~~V~~~--~~-----~~V~viD~~t~~v~~--~i~~g~~p~~-v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 166 ENLFSVTLR--DA-----GQIALIDGSTYEIKT--VLDTGYAVHI-SRLSASGRYLFVIGR----DGKVNMIDLWMKEPT 231 (567)
T ss_dssp GGEEEEEET--TT-----TEEEEEETTTCCEEE--EEECSSCEEE-EEECTTSCEEEEEET----TSEEEEEETTSSSCC
T ss_pred CceEEEEeC--CC-----CeEEEEECCCCeEEE--EEeCCCCccc-eEECCCCCEEEEEcC----CCeEEEEECCCCCCc
Confidence 567777765 22 367788887765332 1122222222 5554 3 36999543 3479999996 766
Q ss_pred cccccccccCCCcccccccceeEE----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC-CCC------CC
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWI----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG-SGR------SA 322 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~-~~~------~~ 322 (472)
++.+|.. +. .|-.+... +-+..+|++.. ..++|-.+|..+.+++.+..-.+ .-. .+
T Consensus 232 ~v~~i~~--G~-----~P~~ia~s~~~~pDGk~l~v~n~------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 232 TVAEIKI--GS-----EARSIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp EEEEEEC--CS-----EEEEEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EeEEEec--CC-----CCceeEEccccCCCCCEEEEEEc------cCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 5544432 00 11122222 12447888754 23578899999999888765431 000 12
Q ss_pred cccccccceeeeecCCeEEEEccc-CCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--C
Q 012060 323 RFGDSFADVDVDVDELTLFKICSK-SGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--G 399 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~-~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g 399 (472)
|... +.++. .+..|++--. +|.+...|.... ....+.. +...+. ..+.++..-+..+|++- .
T Consensus 299 rva~----i~~s~-~~~~~vv~~~~~g~v~~vd~~~~---~~~~v~~----i~~~~~---~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 299 RVAA----ILASH-YRPEFIVNVKETGKILLVDYTDL---NNLKTTE----ISAERF---LHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp CEEE----EEECS-SSSEEEEEETTTTEEEEEETTCS---SEEEEEE----EECCSS---EEEEEECTTSCEEEEEEGGG
T ss_pred ceEE----EEEcC-CCCEEEEEecCCCeEEEEecCCC---ccceeee----eecccc---ccCceECCCCCEEEEEeCCC
Confidence 2221 22222 3333433332 233222222211 1122221 111110 01112222234566653 3
Q ss_pred CeEEEeeccccccccccCCcceeeccc-cccccCCCCceEEEeecCceEEEeee-ccceeEEeecCC
Q 012060 400 GSLEVWSRVREGRNRSCSEGLFRRNFV-DRVEDSGRGAISRIDAGGNRLFVSRE-DVEGIEVWESSN 464 (472)
Q Consensus 400 ~~~~v~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~i~~~~~gg~r~f~~~~-~~~~~~vw~~~~ 464 (472)
+.|.|+.-- +.++...--+ ++.++..+|.. -+.-.|.++|++-+ ..+.|-|+.+.+
T Consensus 364 n~V~ViD~~--------t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 364 NKLVVIDTK--------EGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TEEEEEETT--------TTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CeEEEEECC--------CCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 778886543 2223344456 77777777743 23445678888765 457799998765
No 225
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=78.84 E-value=45 Score=31.58 Aligned_cols=149 Identities=11% Similarity=0.118 Sum_probs=72.7
Q ss_pred eEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc--ccC--CCCcEEeecCCCCc
Q 012060 298 YVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR--NLG--EDPWVYMEDKNPSM 373 (472)
Q Consensus 298 sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~--s~e--~d~W~~~~~~~~~m 373 (472)
++-.+|+.+++ ++.........++ .++..-.+..||+.+..++..+. +. .+. +++...+.. .
T Consensus 30 ~~~~~d~~~g~--~~~~~~~~~~~p~------~l~~spdg~~l~~~~~~~~~~~~--v~~~~~~~~~g~~~~~~~----~ 95 (361)
T 3scy_A 30 YTFRFNEETGE--SLPLSDAEVANPS------YLIPSADGKFVYSVNEFSKDQAA--VSAFAFDKEKGTLHLLNT----Q 95 (361)
T ss_dssp EEEEEETTTCC--EEEEEEEECSCCC------SEEECTTSSEEEEEECCSSTTCE--EEEEEEETTTTEEEEEEE----E
T ss_pred EEEEEeCCCCC--EEEeecccCCCCc------eEEECCCCCEEEEEEccCCCCCc--EEEEEEeCCCCcEEEeeE----e
Confidence 45556888888 4443321011121 23345656778887763211111 22 122 244555553 2
Q ss_pred ccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccC---CCCceEE--EeecCce
Q 012060 374 ISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDS---GRGAISR--IDAGGNR 446 (472)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~i~~--~~~gg~r 446 (472)
..... .-+.++.-++.||++. ++.|.+|.--.. +.+.+....-.+.+..+.. ....+.. |+--|.+
T Consensus 96 ~~~~~----~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~---g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 96 KTMGA----DPCYLTTNGKNIVTANYSGGSITVFPIGQD---GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp ECSSS----CEEEEEECSSEEEEEETTTTEEEEEEBCTT---SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred ccCCC----CcEEEEECCCEEEEEECCCCEEEEEEeCCC---CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 21111 2344555344588874 578999985322 1111111111112221111 1222444 4447889
Q ss_pred EEEeeeccceeEEeecCCCCc
Q 012060 447 LFVSREDVEGIEVWESSNLSG 467 (472)
Q Consensus 447 ~f~~~~~~~~~~vw~~~~~~~ 467 (472)
||++-.....|.||.-....|
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCC
T ss_pred EEEEeCCCCEEEEEEEcCCCC
Confidence 999988888899997554443
No 226
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=78.01 E-value=48 Score=31.41 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe-eeeEEcCCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE-VVWETNEPGSGR 320 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~-~vW~~~~~~~~~ 320 (472)
+.|-+||+.+.+.+..++. -....|.-+.. .-+|.||++.. ..+.|.+||+.... .+.+.-.++...
T Consensus 69 ~~i~~~d~~~g~~~~~~~~-----~~~~~p~gia~-d~~g~l~v~d~------~~~~v~~~~~~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK-----NLFYLPHGLSI-DTDGNYWVTDV------ALHQVFKLDPHSKEGPLLILGRSMQPG 136 (329)
T ss_dssp CCEEEECTTTCCEEEEECT-----TTCSSEEEEEE-CTTSCEEEEET------TTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred CcEEEEECCCCeEEeccCC-----CccCCceEEEE-CCCCCEEEEEC------CCCEEEEEeCCCCeEEEEEecccCCCC
Confidence 4799999998664443332 11112222222 24677999754 23579999997663 455554321000
Q ss_pred --CCcccccccceeeeecCCeEEEEccc-CCCcccccccccC-CCCcEE-eec-CCCCcccCCCCCCCcCeEEEEE--CC
Q 012060 321 --SARFGDSFADVDVDVDELTLFKICSK-SGDIAMADLRNLG-EDPWVY-MED-KNPSMISSSGNNNGENKLIHCY--KN 392 (472)
Q Consensus 321 --~~R~~~~~~d~~v~~~~~~iy~vGg~-~g~~~~~dl~s~e-~d~W~~-~~~-~~~~m~~~~~~~~~~~~~~~~~--~g 392 (472)
..... .-.++++...++.||+..++ ++.. +.+. ++.... +.. .... .+..+.-..-.+|++- +|
T Consensus 137 ~~~~~~~-~P~~ia~~~~~g~lyv~d~~~~~~I-----~~~~~~g~~~~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g 208 (329)
T 3fvz_A 137 SDQNHFC-QPTDVAVEPSTGAVFVSDGYCNSRI-----VQFSPSGKFVTQWGEESSGS--SPRPGQFSVPHSLALVPHLD 208 (329)
T ss_dssp CSTTCCS-SEEEEEECTTTCCEEEEECSSCCEE-----EEECTTSCEEEEECEECCSS--SCCTTEESCEEEEEEETTTT
T ss_pred CCccccC-CCcEEEEeCCCCeEEEEeCCCCCeE-----EEEcCCCCEEEEeccCCCCC--CCCCcccCCCcEEEEECCCC
Confidence 01111 11123334348999999863 4332 2222 222211 211 0000 0000000013456664 38
Q ss_pred EEEEec--CCeEEEeecc
Q 012060 393 QVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 393 ~l~~~~--g~~~~v~~~~ 408 (472)
+||++. ++.|.+|+..
T Consensus 209 ~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 209 QLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECC
Confidence 999994 5789999864
No 227
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=77.80 E-value=28 Score=33.83 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=55.3
Q ss_pred EEEe-CCeEEEEecCCCCCceeEEEeCCC-cccccccccccCCCcc--cccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 224 IADS-PTTVFSSLVCPHKENSVLLIDKST-LQISSEIGRQSGASSK--NMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 224 va~l-~g~IYAGg~~~~~l~sVE~YDp~t-~~~~~~~~~~~~~~W~--~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
++.. ++.+++.+. ...|..||..+ .+....+..+. .... ......+.+.+.+..++++|+.+ +.|
T Consensus 183 ~~~~~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i 251 (447)
T 3dw8_B 183 ISINSDYETYLSAD----DLRINLWHLEITDRSFNIVDIKP-ANMEELTEVITAAEFHPNSCNTFVYSSSK------GTI 251 (447)
T ss_dssp EEECTTSSEEEEEC----SSEEEEEETTEEEEEEEEEECCC-SSGGGCCCCEEEEEECSSCTTEEEEEETT------SCE
T ss_pred EEEcCCCCEEEEeC----CCeEEEEECCCCCceeeeeeccc-ccccccCcceEEEEECCCCCcEEEEEeCC------CeE
Confidence 4443 455666333 34788999984 22211110000 0000 00112233444443677777744 469
Q ss_pred EEEcCCCCee----eeEEcCCCCCCCCcc----cccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 300 RMWDPRSGEV----VWETNEPGSGRSARF----GDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 300 e~yDp~~~~~----vW~~~~~~~~~~~R~----~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
.+||.++++. +..+..+-....... ...+..++... ++.+.+.|+. +....-|+++
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCC
Confidence 9999999884 444444310000000 00222233333 5666667766 6554445543
No 228
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=75.94 E-value=26 Score=39.11 Aligned_cols=196 Identities=11% Similarity=0.016 Sum_probs=91.6
Q ss_pred cceeeccCCcEEEeee---CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG---GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G---G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +.++ |.| |.|..||-.. ..... ..+-..+.++++..+.+.+.|+ .++ ++..+|..+.+-
T Consensus 22 ~lafspd-g~~l-Asgs~Dg~I~lw~~~~~~~~~~-~~~~~~V~~l~fspg~~L~S~s--~D~-----~v~lWd~~~~~~ 91 (902)
T 2oaj_A 22 AAAFDFT-QNLL-AIATVTGEVHIYGQQQVEVVIK-LEDRSAIKEMRFVKGIYLVVIN--AKD-----TVYVLSLYSQKV 91 (902)
T ss_dssp EEEEETT-TTEE-EEEETTSEEEEECSTTCEEEEE-CSSCCCEEEEEEETTTEEEEEE--TTC-----EEEEEETTTCSE
T ss_pred EEEECCC-CCEE-EEEeCCCEEEEEeCCCcEEEEE-cCCCCCEEEEEEcCCCEEEEEE--CcC-----eEEEEECCCCcE
Confidence 3444455 5555 455 3477776221 11000 0112234456666566555555 343 455666655432
Q ss_pred ccCCCCcCcccceeEEEEeC-C-eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcc--------cccccceeEEe
Q 012060 209 TDPSDPRIYRATVTAIADSP-T-TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSK--------NMAVGKLTWIP 278 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l~-g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~--------~v~~m~~~~~~ 278 (472)
.. .... ...+.+++... + +|++|..+ .+|-.||..+.+.. +... .+.|. ..+...+.|.+
T Consensus 92 ~~--~~~~-~~~V~~v~~sp~g~~l~sgs~d----g~V~lwd~~~~~~~-~~~i--~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 92 LT--TVFV-PGKITSIDTDASLDWMLIGLQN----GSMIVYDIDRDQLS-SFKL--DNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EE--EEEC-SSCEEEEECCTTCSEEEEEETT----SCEEEEETTTTEEE-EEEE--CCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EE--EEcC-CCCEEEEEECCCCCEEEEEcCC----CcEEEEECCCCccc-ccee--ccccccccccccCCCCeEEEEEcc
Confidence 11 1111 11222344432 3 45556554 36889999885421 0000 01111 11234456666
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC---CC-C----CCccc--ccccceeeeecCCeEEEEcccCC
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG---SG-R----SARFG--DSFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~---~~-~----~~R~~--~~~~d~~v~~~~~~iy~vGg~~g 348 (472)
.++.++++|+. .+.| .||.++++++-+..... .. . ..... ..+-+++... ++.+++.|+.|+
T Consensus 162 ~~~~~l~~g~~------dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg 233 (902)
T 2oaj_A 162 RDIGTVLISYE------YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDN 233 (902)
T ss_dssp TEEEEEEEECS------SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTC
T ss_pred CCCCEEEEEeC------CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCC
Confidence 55455666653 3479 99999998665554220 00 0 00000 1122222233 577888999887
Q ss_pred Cccccccc
Q 012060 349 DIAMADLR 356 (472)
Q Consensus 349 ~~~~~dl~ 356 (472)
....=|++
T Consensus 234 ~i~lWd~~ 241 (902)
T 2oaj_A 234 SLVFWDAN 241 (902)
T ss_dssp CEEEEETT
T ss_pred eEEEEECC
Confidence 65543443
No 229
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=75.29 E-value=52 Score=30.46 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=76.6
Q ss_pred ccceeEEEEeCC----eEEE-EecCCCCCceeEEEeCCC-cccc-cccccccCCCcccccccceeEEecCCeEEEEEEeC
Q 012060 218 RATVTAIADSPT----TVFS-SLVCPHKENSVLLIDKST-LQIS-SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAW 290 (472)
Q Consensus 218 R~~~~ava~l~g----~IYA-Gg~~~~~l~sVE~YDp~t-~~~~-~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~ 290 (472)
...+.+++...+ .+.| |+.+ ..|-.||..+ .+.+ ..+.. +.-+...+.+.+ ++.++++|+.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~------h~~~v~~~~~~~-~~~~l~s~~~- 106 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWA----NDVRCWEVQDSGQTIPKAQQM------HTGPVLDVCWSD-DGSKVFTASC- 106 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETT----SEEEEEEECTTSCEEEEEEEE------CSSCEEEEEECT-TSSEEEEEET-
T ss_pred CCceEEEEEcCCCCCceEEEEECCC----CcEEEEEcCCCCceeEEEecc------ccCCEEEEEECc-CCCEEEEEcC-
Confidence 344445666653 5555 6554 4688999887 2211 10000 001112233433 5556666653
Q ss_pred CCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee-ecCCeEEEEcccCCCcccccccccCCCCcEEeecC
Q 012060 291 GAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD-VDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDK 369 (472)
Q Consensus 291 g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~-~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~ 369 (472)
.+.|.+||.++++++...... ..+..++.. .-++.+++.|+.++....-|+++-+ +=..+.
T Consensus 107 -----dg~v~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~-- 168 (368)
T 3mmy_A 107 -----DKTAKMWDLSSNQAIQIAQHD---------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN--PMMVLQ-- 168 (368)
T ss_dssp -----TSEEEEEETTTTEEEEEEECS---------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS--CSEEEE--
T ss_pred -----CCcEEEEEcCCCCceeecccc---------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc--EEEEEe--
Confidence 357999999999855432211 111112221 3467788899988775544444322 011111
Q ss_pred CCCcccCCCCCCCcCeEEEEECCEEEEe-cCCeEEEeecc
Q 012060 370 NPSMISSSGNNNGENKLIHCYKNQVFVG-RGGSLEVWSRV 408 (472)
Q Consensus 370 ~~~m~~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~v~~~~ 408 (472)
... .-..+......+++. .++.+.+|.-.
T Consensus 169 -----~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 169 -----LPE-----RCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp -----CSS-----CEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred -----cCC-----CceEEEecCCeeEEEeCCCcEEEEEec
Confidence 111 123344445555544 55899999875
No 230
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=74.23 E-value=50 Score=29.78 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=106.0
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE-eCCeEEEEecCCCCCceeEEEeCCCcccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD-SPTTVFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~-l~g~IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
-++.+|+... .+ ..+..||+. .++......... ....+++. -++.||++... ...|-+||+.. + +
T Consensus 24 ~~g~l~v~~~--~~-----~~v~~~d~~-~~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~g-~-~ 89 (299)
T 2z2n_A 24 DKGKVWITQH--KA-----NMISCINLD-GKITEYPLPTPD-AKVMCLTISSDGEVWFTENA---ANKIGRITKKG-I-I 89 (299)
T ss_dssp TTSCEEEEET--TT-----TEEEEECTT-CCEEEEECSSTT-CCEEEEEECTTSCEEEEETT---TTEEEEECTTS-C-E
T ss_pred CCCCEEEEec--CC-----CcEEEEcCC-CCeEEecCCccc-CceeeEEECCCCCEEEeCCC---CCeEEEECCCC-c-E
Confidence 3577887653 12 245667776 555443211111 12223555 35789985322 23578888863 1 1
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.... ....|..+.. .-+|.||++... .+.|.+||| +++..- ...+. ....-.++ +. .
T Consensus 90 ~~~~~~~----~~~~~~~i~~-~~~g~l~v~~~~------~~~i~~~d~-~g~~~~-~~~~~---~~~~~~~i---~~-~ 149 (299)
T 2z2n_A 90 KEYTLPN----PDSAPYGITE-GPNGDIWFTEMN------GNRIGRITD-DGKIRE-YELPN---KGSYPSFI---TL-G 149 (299)
T ss_dssp EEEECSS----TTCCEEEEEE-CTTSCEEEEETT------TTEEEEECT-TCCEEE-EECSS---TTCCEEEE---EE-C
T ss_pred EEEeCCC----cCCCceeeEE-CCCCCEEEEecC------CceEEEECC-CCCEEE-ecCCC---CCCCCceE---EE-c
Confidence 1111000 0001111111 136889987531 347999999 665221 11121 11111222 22 2
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeecccccc
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVREGR 412 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~ 412 (472)
-++.||+..-.++.+...|. +++...+.. ..... .-.+++.- +|+||++. ++.|.+|+. ..
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~-----~~~~~----~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-- 213 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE----SGDITEFKI-----PTPAS----GPVGITKGNDDALWFVEIIGNKIGRITT-SG-- 213 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT----TCCEEEEEC-----SSTTC----CEEEEEECTTSSEEEEETTTTEEEEECT-TC--
T ss_pred CCCCEEEEeCCCCEEEEEcC----CCcEEEeeC-----CCCCC----cceeEEECCCCCEEEEccCCceEEEECC-CC--
Confidence 36789976543333322122 344444321 11111 12245443 47899986 578888876 22
Q ss_pred ccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeec
Q 012060 413 NRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWES 462 (472)
Q Consensus 413 ~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~ 462 (472)
. ++. +.. + .....+..|.+.. ++|||+-....+|-+|+.
T Consensus 214 --~-----~~~-~~~--~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 214 --E-----ITE-FKI--P-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --C-----EEE-EEC--S-STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --c-----EEE-EEC--C-CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 0 111 100 0 1234577777753 368888666667777764
No 231
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=73.80 E-value=5.2 Score=40.56 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=42.8
Q ss_pred cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 272 GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 272 m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
..+.|.+.++.++++|+.+ ++|.+||.+++..+...... ...+..++-.- ++...++|+.++...
T Consensus 153 ~~v~~~p~~~~~las~s~D------g~v~iwD~~~~~~~~~~~~~--------~~~v~~v~wsp-dg~~lasgs~dg~v~ 217 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLAD------GSIAVLQVTETVKVCATLPS--------TVAVTSVCWSP-KGKQLAVGKQNGTVV 217 (434)
T ss_dssp EEEEECSSCTTEEEEEETT------SCEEEEEESSSEEEEEEECG--------GGCEEEEEECT-TSSCEEEEETTSCEE
T ss_pred EEEEECCCCCCEEEEEECC------CeEEEEEcCCCcceeeccCC--------CCceeEEEEcC-CCCEEEEEcCCCcEE
Confidence 4455666667788887744 46999999999755544432 11222222333 466777888887755
Q ss_pred ccccc
Q 012060 352 MADLR 356 (472)
Q Consensus 352 ~~dl~ 356 (472)
.-|++
T Consensus 218 iwd~~ 222 (434)
T 2oit_A 218 QYLPT 222 (434)
T ss_dssp EECTT
T ss_pred EEccC
Confidence 44444
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=73.19 E-value=64 Score=30.57 Aligned_cols=237 Identities=12% Similarity=0.031 Sum_probs=105.9
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE-eCCeEEEEecCCCCCceeEEEeCCCcccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD-SPTTVFSSLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~-l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
+.+|+++. .+ ..+.+||+.+.+...... .. .+.+++. -+|.+|++.. +.+-+||+.+.+.. .
T Consensus 61 ~~l~~~d~--~~-----~~i~~~d~~~~~~~~~~~-~~---~v~~i~~~~dg~l~v~~~-----~gl~~~d~~~g~~~-~ 123 (326)
T 2ghs_A 61 GTAWWFNI--LE-----RELHELHLASGRKTVHAL-PF---MGSALAKISDSKQLIASD-----DGLFLRDTATGVLT-L 123 (326)
T ss_dssp TEEEEEEG--GG-----TEEEEEETTTTEEEEEEC-SS---CEEEEEEEETTEEEEEET-----TEEEEEETTTCCEE-E
T ss_pred CEEEEEEC--CC-----CEEEEEECCCCcEEEEEC-CC---cceEEEEeCCCeEEEEEC-----CCEEEEECCCCcEE-E
Confidence 57787765 22 246678887665433221 11 1223443 4677888532 34889999874311 0
Q ss_pred cccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC
Q 012060 258 IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE 337 (472)
Q Consensus 258 ~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~ 337 (472)
+.... ..-....+... ...-+|.||++..........+.|.+|| +++ .+..... ...+ .+. +....+
T Consensus 124 ~~~~~-~~~~~~~~~~i-~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~-~~~~-~~i-----~~s~dg 190 (326)
T 2ghs_A 124 HAELE-SDLPGNRSNDG-RMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFAD-ISIP-NSI-----CFSPDG 190 (326)
T ss_dssp EECSS-TTCTTEEEEEE-EECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEE-ESSE-EEE-----EECTTS
T ss_pred EeeCC-CCCCCCCCCCE-EECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCC-Cccc-CCe-----EEcCCC
Confidence 00000 00000000001 1124677888653221111234788888 566 2222110 0011 112 224445
Q ss_pred CeEEEEcccCCCccccccc--cc-C-CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeecccc
Q 012060 338 LTLFKICSKSGDIAMADLR--NL-G-EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVRE 410 (472)
Q Consensus 338 ~~iy~vGg~~g~~~~~dl~--s~-e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~ 410 (472)
..||+....++.+...|+. +- + .+.- .+.. ..... + .-.+++.- +|.||++. ++.|.+|+.- -
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~-~~~~----~~~~~-~---~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g 260 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAE-VFID----STGIK-G---GMDGSVCDAEGHIWNARWGEGAVDRYDTD-G 260 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCE-EEEE----CTTSS-S---EEEEEEECTTSCEEEEEETTTEEEEECTT-C
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCce-EEEE----CCCCC-C---CCCeeEECCCCCEEEEEeCCCEEEEECCC-C
Confidence 5788776444333322322 10 1 1111 1111 10000 0 11234332 57899886 6789999762 1
Q ss_pred ccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEeeeccc-eeEEeecCCCCcce
Q 012060 411 GRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVSREDVE-GIEVWESSNLSGVV 469 (472)
Q Consensus 411 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~~~-~~~vw~~~~~~~~~ 469 (472)
++.++ + + .....|+.++|+| ++|||+-.... .-+-++..+.+|+|
T Consensus 261 --------~~~~~-i----~-~~~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p~~g~~ 309 (326)
T 2ghs_A 261 --------NHIAR-Y----E-VPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLT 309 (326)
T ss_dssp --------CEEEE-E----E-CSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCE
T ss_pred --------CEEEE-E----E-CCCCCcEEEEEecCCCCEEEEEecCCCCChhHhccCCCCceE
Confidence 11122 0 1 1234699999985 58999855432 11223445556655
No 233
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.47 E-value=29 Score=34.68 Aligned_cols=148 Identities=10% Similarity=-0.074 Sum_probs=73.0
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCccccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
-++.||++.. .+ +.+-++|+.+.+-..+...... ..+ ++..-++.||++...+. ..|-+||+.+.....
T Consensus 140 ~~g~lyv~d~--~~-----~~I~~id~~~g~~~~~~~~~~~-~~i-a~~~~g~~l~~~d~~~~--~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 140 GNNTVLAYQR--DD-----PRVRLISVDDNKVTTVHPGFKG-GKP-AVTKDKQRVYSIGWEGT--HTVYVYMKASGWAPT 208 (409)
T ss_dssp STTEEEEEET--TT-----TEEEEEETTTTEEEEEEETCCB-CBC-EECTTSSEEEEEBSSTT--CEEEEEEGGGTTCEE
T ss_pred CCCCEEEEec--CC-----CcEEEEECCCCEEEEeeccCCC-Cce-eEecCCCcEEEEecCCC--ceEEEEEcCCCceeE
Confidence 4678999875 22 3566788876554433222111 114 35444567998533221 178899987633111
Q ss_pred ccccccCCCc-ccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC-CCCCcccccccceeee
Q 012060 257 EIGRQSGASS-KNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS-GRSARFGDSFADVDVD 334 (472)
Q Consensus 257 ~~~~~~~~~W-~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~-~~~~R~~~~~~d~~v~ 334 (472)
.+++. .. ....|-.....+.++.||++ +. .+.|.+||+.++. .+..+... ....... .+.++++.
T Consensus 209 ~~g~~---~~~~~~~p~~iav~p~~g~lyv~---d~----~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~-P~~~ia~~ 275 (409)
T 3hrp_A 209 RIGQL---GSTFSGKIGAVALDETEEWLYFV---DS----NKNFGRFNVKTQE--VTLIKQLELSGSLGTN-PGPYLIYY 275 (409)
T ss_dssp EEEEC---CTTSCSCCCBCEECTTSSEEEEE---CT----TCEEEEEETTTCC--EEEEEECCCCSCCCCS-SCCEEEEE
T ss_pred Eeeec---cchhcCCcEEEEEeCCCCeEEEE---EC----CCcEEEEECCCCC--EEEEecccccCCCCCC-ccccEEEe
Confidence 11110 00 01111122223348999994 11 2479999999887 33331100 0011111 00033345
Q ss_pred ecCCeEEEEcccCC
Q 012060 335 VDELTLFKICSKSG 348 (472)
Q Consensus 335 ~~~~~iy~vGg~~g 348 (472)
..++.||+.-..++
T Consensus 276 p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 276 FVDSNFYMSDQNLS 289 (409)
T ss_dssp TTTTEEEEEETTTT
T ss_pred CCCCEEEEEeCCCC
Confidence 55799998865443
No 234
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=70.19 E-value=74 Score=30.01 Aligned_cols=59 Identities=14% Similarity=0.296 Sum_probs=34.1
Q ss_pred CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 391 KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 391 ~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+|+.+++++ +.|.+|+-... ......+ ..++.|..++|--+.-+++=...++|.+|+..
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~----~~~~~~~----------~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNL----TYPQREF----------DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLM 284 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCC----SSCSEEE----------ECSSCEEEEEECSSSCEEEEEESSCEEEEESS
T ss_pred CCCEEEEEcCCCeEEEEECCCC----cccceee----------cCCCcEEEEEECCCCCEEEEECCCCEEEEEeC
Confidence 566666654 88999986322 1011111 12446888888655444444455679999854
No 235
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=69.63 E-value=74 Score=29.83 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=21.7
Q ss_pred ceEEEeecCceEEEeeeccceeEEeec
Q 012060 436 AISRIDAGGNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 436 ~i~~~~~gg~r~f~~~~~~~~~~vw~~ 462 (472)
.++.+.+++++|||+=...+.|-+.+.
T Consensus 285 ~~~~~~~~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 285 HFEQIQEHDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp CCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred cceEEEEeCCEEEEeecCCCceEEEec
Confidence 477777889999999777778887764
No 236
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=69.03 E-value=17 Score=35.56 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=54.4
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCC--cc-ccceEEEEcCCCCeeeeEEcCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGA--FG-YSGYVRMWDPRSGEVVWETNEPG 317 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~--~~-~~~sve~yDp~~~~~vW~~~~~~ 317 (472)
.+.|-+||+.+.+++..|.. . ..| .+...+-...||++.-.... .+ ..++|..||+.+.+++-+..-+.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~---g----~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPT---A----FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GCEEEEEETTTCCEEEEEEC---C----EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred cCeEEEEECCCCeEEEEecC---C----CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 46899999999665443322 1 122 33444567789997642111 11 24689999999998776654331
Q ss_pred CCCCCcccccccceeeeecCCeEEEEc
Q 012060 318 SGRSARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 318 ~~~~~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
.....+..-.++++...+..||+..
T Consensus 102 --~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 102 --KRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp --TBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred --cccccCCCcceEEECCCCCEEEEEC
Confidence 1111122233455677788899765
No 237
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=68.77 E-value=70 Score=29.21 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCEEEEe--cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecC
Q 012060 391 KNQVFVG--RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 391 ~g~l~~~--~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
+|+||++ .++.|.+|+.-.- ++.+. + . .....+..++++ |++|||+-....+|-+|+..
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~~g--------~~~~~-~----~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPDGG--------QPKMR-I----R-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCB--------SCSEE-E----E-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCEEEEEcCCCEEEEEcCCCC--------cEeEE-E----e-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 5899998 5688999976311 11111 1 0 122468888874 56799998777788888754
No 238
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=68.77 E-value=1.5e+02 Score=32.92 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=57.7
Q ss_pred EEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 223 AIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 223 ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+++.. ++.+.| |+.+ .+|-.||..+.+....+.. ..+-..+.+.+ |.+.++|+. .++|.
T Consensus 22 ~lafspdg~~lAsgs~D----g~I~lw~~~~~~~~~~~~~-------~~~V~~l~fsp--g~~L~S~s~------D~~v~ 82 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVT----GEVHIYGQQQVEVVIKLED-------RSAIKEMRFVK--GIYLVVINA------KDTVY 82 (902)
T ss_dssp EEEEETTTTEEEEEETT----SEEEEECSTTCEEEEECSS-------CCCEEEEEEET--TTEEEEEET------TCEEE
T ss_pred EEEECCCCCEEEEEeCC----CEEEEEeCCCcEEEEEcCC-------CCCEEEEEEcC--CCEEEEEEC------cCeEE
Confidence 35554 344556 6554 3677888877442222111 11123455565 555556553 35799
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+||.++++++-+...+ ..+..++... ++...++|+.+|....-|++
T Consensus 83 lWd~~~~~~~~~~~~~---------~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 83 VLSLYSQKVLTTVFVP---------GKITSIDTDA-SLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp EEETTTCSEEEEEECS---------SCEEEEECCT-TCSEEEEEETTSCEEEEETT
T ss_pred EEECCCCcEEEEEcCC---------CCEEEEEECC-CCCEEEEEcCCCcEEEEECC
Confidence 9999999876665422 1121222233 55666788888875543443
No 239
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=67.06 E-value=47 Score=32.34 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=39.3
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
.++.+.|+|+. .++|.+||.+++..+-..... ..+ ..+ |+-.-.+..+++.|+.++....-|++
T Consensus 154 ~d~~~las~s~------D~tv~~Wd~~~~~~~~~~~~~---~~~--v~~---v~~~p~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 154 LAEQVIASVGD------DCTLIIWRLTDEGPILAGYPL---SSP--GIS---VQFRPSNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp EEEEEEEEEET------TSEEEEEEEETTEEEEEEEEC---SSC--EEE---EEEETTEEEEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEEC------CCeEEEEECCCCceeeeecCC---CCC--cEE---EEECCCCCceEEecCCCCEEEEEECC
Confidence 36788998884 347999999988755444433 111 111 11233355688899988876544554
No 240
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=64.70 E-value=68 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=18.1
Q ss_pred cCCeEEEEEE---eCCCccccceEEEEcCCCCe
Q 012060 279 ATGVVLGSAI---AWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 279 ~~g~Lyv~Gg---~~g~~~~~~sve~yDp~~~~ 308 (472)
-+|.||++.. ..+. ..+.|.+||+.+++
T Consensus 27 ~~g~l~~~~~~~~~~~~--~~~~i~~~d~~~g~ 57 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGK--PAGEILRIDLKTGK 57 (314)
T ss_dssp TTSCEEEEETTCEETTE--ECCEEEEECTTTCC
T ss_pred CCCCEEEEEeccccCCC--CCCEEEEEeCCCCc
Confidence 5778888710 0011 23579999999998
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=64.37 E-value=7.8 Score=38.26 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=35.1
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
.++.||+++. .+.|.+||+.+++++|+.... .. .. . ..+.++.+|++++.++.+...|.
T Consensus 8 ~~~~v~~gs~-------dg~v~a~d~~tG~~~W~~~~~-~~---~s-~------p~~~~g~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 8 PETLLFVSTL-------DGSLHAVSKRTGSIKWTLKED-PV---LQ-V------PTHVEEPAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp CTTEEEEEET-------TSEEEEEETTTCCEEEEEECC-CS---CC-C------C-----CCEEECTTTCCEEEC--
T ss_pred eCCEEEEEcC-------CCEEEEEECCCCCEEEEecCC-Cc---ee-c------ceEcCCCEEEEeCCCCEEEEEEC
Confidence 4778887642 357999999999999998751 11 11 1 13346778888777766554343
No 242
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=64.30 E-value=22 Score=34.66 Aligned_cols=107 Identities=9% Similarity=0.037 Sum_probs=59.8
Q ss_pred ceeeeecCCCCccccCCCCcCcccceeEEEEeC--CeEEEEec--C----CCCCceeEEEeCCCcccccccccccCCCcc
Q 012060 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADSP--TTVFSSLV--C----PHKENSVLLIDKSTLQISSEIGRQSGASSK 267 (472)
Q Consensus 196 ~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~--g~IYAGg~--~----~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~ 267 (472)
+.+..||+.+.+-.. .+.....- + ++... .+||+... . +...++|-+||+.+++++.+|.-.. ...+
T Consensus 31 ~~v~v~D~~t~~~~~--~i~~g~~p-~-i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~-~~~~ 105 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLG--MVPTAFNG-H-VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP-KRVQ 105 (361)
T ss_dssp CEEEEEETTTCCEEE--EEECCEEE-E-EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT-TBCC
T ss_pred CeEEEEECCCCeEEE--EecCCCCC-c-eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc-cccc
Confidence 356777777665332 12111111 2 55543 36999421 1 1235689999999988766654210 0000
Q ss_pred -cccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE
Q 012060 268 -NMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE 312 (472)
Q Consensus 268 -~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~ 312 (472)
-..|......+-...||++... ..++|..||..+++++-+
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~-----~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNAS-----PATSIGIVDVAKGDYVED 146 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEES-----SSEEEEEEETTTTEEEEE
T ss_pred cCCCcceEEECCCCCEEEEECCC-----CCCeEEEEECCCCcEEEE
Confidence 0123334444566788887431 136899999999987654
No 243
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=64.06 E-value=82 Score=28.29 Aligned_cols=179 Identities=8% Similarity=0.043 Sum_probs=85.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
++.+|+... .+ ..+.+||+. .++......... ....+++.. ++.||++... -+.|-+||+.. +..
T Consensus 72 ~g~l~v~~~--~~-----~~v~~~d~~-g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~g-~~~- 137 (300)
T 2qc5_A 72 LGDIWFTEN--GA-----NKIGKLSKK-GGFTEYPLPQPD-SGPYGITEGLNGDIWFTQLN---GDRIGKLTADG-TIY- 137 (300)
T ss_dssp TSCEEEEET--TT-----TEEEEECTT-SCEEEEECSSTT-CCEEEEEECSTTCEEEEETT---TTEEEEECTTS-CEE-
T ss_pred CCCEEEEec--CC-----CeEEEECCC-CCeEEecCCCCC-CCCccceECCCCCEEEEccC---CCeEEEECCCC-CEE-
Confidence 577888754 22 245677777 554432211111 112235554 6789995322 24688899873 311
Q ss_pred ccccccCCCcccccccceeE-E--ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEc-CCCCCCCCccccccccee
Q 012060 257 EIGRQSGASSKNMAVGKLTW-I--PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETN-EPGSGRSARFGDSFADVD 332 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~m~~~~-~--~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~-~~~~~~~~R~~~~~~d~~ 332 (472)
++ ..-.....+. + .-+|.||++.. ..+.|.+||+ +++ .... .+.... .-.+ ++
T Consensus 138 ~~--------~~~~~~~~~~~i~~d~~g~l~v~~~------~~~~i~~~~~-~g~--~~~~~~~~~~~---~~~~---i~ 194 (300)
T 2qc5_A 138 EY--------DLPNKGSYPAFITLGSDNALWFTEN------QNNSIGRITN-TGK--LEEYPLPTNAA---APVG---IT 194 (300)
T ss_dssp EE--------ECSSTTCCEEEEEECTTSSEEEEET------TTTEEEEECT-TCC--EEEEECSSTTC---CEEE---EE
T ss_pred Ec--------cCCCCCCCceeEEECCCCCEEEEec------CCCeEEEECC-CCc--EEEeeCCCCCC---Ccce---EE
Confidence 11 0000111111 1 24677888643 1347999999 666 3222 121011 1122 22
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeec
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSR 407 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~ 407 (472)
+. -++.||+.....+.+...|. ++.+..+.- ..... .-.+++.- +|+||++. ++.|.+|+.
T Consensus 195 ~d-~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~-----~~~~~----~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 195 SG-NDGALWFVEIMGNKIGRITT----TGEISEYDI-----PTPNA----RPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EC-TTSSEEEEETTTTEEEEECT----TCCEEEEEC-----SSTTC----CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EC-CCCCEEEEccCCCEEEEEcC----CCcEEEEEC-----CCCCC----CceEEEECCCCCEEEeccCCCeEEEECC
Confidence 23 26789976543333222121 344544431 11111 12344443 57899986 578988876
No 244
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=63.27 E-value=80 Score=34.13 Aligned_cols=213 Identities=12% Similarity=0.021 Sum_probs=97.9
Q ss_pred eeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCC----cccccccccccCCCcccccc
Q 012060 198 SSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKST----LQISSEIGRQSGASSKNMAV 271 (472)
Q Consensus 198 ve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t----~~~~~~~~~~~~~~W~~v~~ 271 (472)
+...+..+.....+.+.. +.-. |++.. ++.||..- .....|.++|+.+ ......+.. ....|
T Consensus 388 I~~id~~~~~~~~~~~~~--~~p~-gla~d~~~~~Ly~sD---~~~~~I~~~~~~g~~~~~~~~~~i~~------~~~~P 455 (699)
T 1n7d_A 388 VRKMTLDRSEYTSLIPNL--RNVV-ALDTEVASNRIYWSD---LSQRMICSTQLDRAHGVSSYDTVISR------DIQAP 455 (699)
T ss_dssp -CEECTTSCCEECCSCCC--TTCC-CCEEETTTTEEEECC---TTTTSBEEEESCCCCC-CCCCCBCCS------CC--C
T ss_pred eEEEeCCCCcceeeeccC--cceE-EEccccccCeEEEEe---cCCCeEEEEecCCCCCCcceEEEEeC------CCCCc
Confidence 344555555554433221 1222 25554 57899831 1235788899875 111000000 00112
Q ss_pred cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC-CCc
Q 012060 272 GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS-GDI 350 (472)
Q Consensus 272 m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~-g~~ 350 (472)
.-+..-..++.||++- . ..+.|+++|+..... +.........+| ++++...++.||..--.. +.+
T Consensus 456 ~glavD~~~g~LY~tD---~---~~~~I~v~d~dg~~~--~~l~~~~~~~P~------giavDp~~g~ly~td~~~~~~I 521 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTD---S---VLGTVSVADTKGVKR--KTLFREQGSKPR------AIVVDPVHGFMYWTDWGTPAKI 521 (699)
T ss_dssp CCEECCCSSSBCEECC---T---TTSCEEEEBSSSCCE--EEECCCSSCCCC------CEECCSSSSCCEECCCSSSCCE
T ss_pred ceEEEEeeCCcEEEEe---c---cCCeEEEEecCCCce--EEEEeCCCCCcc------eEEEccCCCcEEEcccCCCCeE
Confidence 1122222568888852 1 245799999987752 222221123333 223455688999765211 222
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEecC--CeEEEeeccccccccccCCcceeeccc
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFV 426 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~ 426 (472)
...++.. +. -..+.. ..+.. -.+|++ -+++||++-. ..|+++..-. ..|+-++
T Consensus 522 ~~~~~dG--~~-~~~l~~--~~l~~--------PnGlavd~~~~~LY~aD~~~~~I~~~d~dG----------~~~~~~~ 578 (699)
T 1n7d_A 522 KKGGLNG--VD-IYSLVT--ENIQW--------PNGITLDLLSGRLYWVDSKLHSISSIDVNG----------GNRKTIL 578 (699)
T ss_dssp EBCCSSS--CC-CCEESC--SSCSS--------CCCEEECTTTCCEEEEETTTTEEEEECSSS----------SCCEEEC
T ss_pred EEEeCCC--CC-eeEEEe--CCCCC--------ccEEEEeccCCEEEEEecCCCeEEEEccCC----------CceEEEE
Confidence 2111110 11 111111 01112 224555 3789999844 5787776421 1233333
Q ss_pred cccccCCCCceEEEeecCceEEEeeeccceeEEee
Q 012060 427 DRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 427 ~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
... ...+....|++-+++||++=.....|.+..
T Consensus 579 ~~~--~~~~~P~glavd~~~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 579 EDE--KRLAHPFSLAVFEDKVFWTDIINEAIFSAN 611 (699)
T ss_dssp CCS--SSCSSCCCCEEETTEEEEECSTTTCEEEEE
T ss_pred ecC--CcCCCceEeEEECCEEEEEeCCCCeEEEEE
Confidence 221 111223345555678888876666666665
No 245
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=63.25 E-value=1.6e+02 Score=32.40 Aligned_cols=224 Identities=8% Similarity=-0.019 Sum_probs=0.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCccccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEI 258 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~ 258 (472)
..||.... ..+-..+.....+..+.+-...-.++. +-..++.||.. ....+.|.++++..
T Consensus 396 p~Ll~an~---------~~Ir~i~l~~~~~~~l~~~~~~~~gl~-~d~~~~~lY~s---D~~~~~I~~~~l~g------- 455 (791)
T 3m0c_C 396 AYLFFTNR---------HEVRKMTLDRSEYTSLIPNLRNVVALD-TEVASNRIYWS---DLSQRMICSTQLDR------- 455 (791)
T ss_dssp CEEEEECB---------SSEEEECTTSCCCEEEECSCSSEEEEE-EETTTTEEEEE---ETTTTEEEEEEC---------
T ss_pred cccccccc---------cceeEeeccCCcceeeecCCCceEEEe-ecccCCeeEEe---eccceeEEEEeccC-------
Q ss_pred ccccCCCccccc-----ccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 259 GRQSGASSKNMA-----VGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 259 ~~~~~~~W~~v~-----~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
....+.....+. |.-+..-..++.||++-. ..+.|+++|+.... -+......+..+|.-+ +
T Consensus 456 ~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~--~~~l~~~~l~~P~gIa------V 521 (791)
T 3m0c_C 456 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVK--RKTLFRENGSKPRAIV------V 521 (791)
T ss_dssp ------CEEEECSSCSCCCEEEEETTTTEEEEEET------TTTEEEEEETTSSS--EEEEEECTTCCEEEEE------E
T ss_pred CCCCcceeEEEecCCCCcceeeeeecCCcEEEEec------CCCeEEEEeCCCCe--EEEEEeCCCCCcceEE------E
Q ss_pred eecCCeEEEEc-ccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEe--cCCeEEEeecccc
Q 012060 334 DVDELTLFKIC-SKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVG--RGGSLEVWSRVRE 410 (472)
Q Consensus 334 ~~~~~~iy~vG-g~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~--~g~~~~v~~~~~~ 410 (472)
...++.||..= |..+....+++.-...-....-. +..+. +..|-..+++||++ +...|+++..--.
T Consensus 522 Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-----l~~P~------GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 522 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-----IQWPN------GITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-----CSCEE------EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-----CCCce------EEEEecCCCeEEEEeCCCCcEEEEecCCC
Q ss_pred ccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEE
Q 012060 411 GRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEV 459 (472)
Q Consensus 411 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~v 459 (472)
.|+-++........ -..|++-+++||++=.....|.+
T Consensus 591 ----------~~~~v~~~~~~l~~--P~glav~~~~lYwtD~~~~~I~~ 627 (791)
T 3m0c_C 591 ----------NRKTILEDEKRLAH--PFSLAVFEDKVFWTDIINEAIFS 627 (791)
T ss_dssp ----------SCEEEEECTTTTSS--EEEEEEETTEEEEEETTTTEEEE
T ss_pred ----------ceEEEecCCCccCC--CCEEEEeCCEEEEEECCCCEEEE
No 246
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=58.19 E-value=1.3e+02 Score=28.77 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=92.7
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGR 320 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~ 320 (472)
..+|-.||+.+.+++.++.. .. .+ ..+.+.+ +|.+++++. .+.+.+|+..+++.+-...... .
T Consensus 156 d~~i~iwd~~~~~~~~~~~~---~~--~V--~~v~fsp-dg~~l~s~s-------~~~~~~~~~~~~~~~~~~~~~~--~ 218 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIET---RG--EV--KDLHFST-DGKVVAYIT-------GSSLEVISTVTGSCIARKTDFD--K 218 (365)
T ss_dssp SCEEEEEETTTTEEEEEEEC---SS--CC--CEEEECT-TSSEEEEEC-------SSCEEEEETTTCCEEEEECCCC--T
T ss_pred CCEEEEeECCCCcEEEEeCC---CC--ce--EEEEEcc-CCceEEecc-------ceeEEEEEeccCcceeeeecCC--C
Confidence 45889999999776666654 11 12 2233433 666666654 2357888888887333222221 1
Q ss_pred CCcccccccceeeeecCCeEEEEcccCCCcccccccccC--CCCcEEeecCCCCcccCCCCCCCcCe-EEE-EECCEEEE
Q 012060 321 SARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG--EDPWVYMEDKNPSMISSSGNNNGENK-LIH-CYKNQVFV 396 (472)
Q Consensus 321 ~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~-~~~g~l~~ 396 (472)
...+..++..- ++..++.++.++.... -++... ...+..... +...... ... .++ .-+|++++
T Consensus 219 ----~~~v~~v~fsp-dg~~l~~~s~d~~~~~-~i~~~~~~~~~~~~~~~--~~~~~~~-----~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 219 ----NWSLSKINFIA-DDTVLIAASLKKGKGI-VLTKISIKSGNTSVLRS--KQVTNRF-----KGITSMDVDMKGELAV 285 (365)
T ss_dssp ----TEEEEEEEEEE-TTEEEEEEEESSSCCE-EEEEEEEETTEEEEEEE--EEEESSC-----SCEEEEEECTTSCEEE
T ss_pred ----CCCEEEEEEcC-CCCEEEEEecCCccee-EEeecccccceecceee--eeecCCC-----CCeEeEEECCCCCceE
Confidence 11121222233 6677777776643211 012111 221221111 0011111 111 111 22677777
Q ss_pred ecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecCC
Q 012060 397 GRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 397 ~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~ 464 (472)
+++ +.|.+|+-... +..+.-+-+ -.+.|+.++|== +++++|=..-.-|-||+-|.
T Consensus 286 sgs~D~~V~iwd~~~~--------~~~~~~~~g-----H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 286 LASNDNSIALVKLKDL--------SMSKIFKQA-----HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSCEEEEETTTT--------EEEEEETTS-----SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEcCCCEEEEEECCCC--------cEEEEecCc-----ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 654 78999985311 111221112 356799999953 36778888889999999653
No 247
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=56.70 E-value=63 Score=32.92 Aligned_cols=104 Identities=18% Similarity=0.141 Sum_probs=59.5
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEe--CCCcc-ccceEEEEcCCCCeeeeEEcCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA--WGAFG-YSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~--~g~~~-~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
++|-+||+.|++.+.+|.- ..+ | .....+-...|||+-.. .+..+ ..++|..+|+.+++++-+..-+.
T Consensus 99 ~~VsVID~~t~~vv~~I~v---G~~----P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g- 169 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG---GFL----P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD- 169 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE---CSS----C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-
T ss_pred CeEEEEECCCCEEEEEEEC---CCC----C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC-
Confidence 7999999999887776654 111 3 33444567789996421 00000 24689999999999876654220
Q ss_pred CCCCcc--cccccceeeeecCCeEEEEccc-CCCccccccc
Q 012060 319 GRSARF--GDSFADVDVDVDELTLFKICSK-SGDIAMADLR 356 (472)
Q Consensus 319 ~~~~R~--~~~~~d~~v~~~~~~iy~vGg~-~g~~~~~dl~ 356 (472)
.+|+ +..--.+++.-.+.+||+..-. ++.+...|+.
T Consensus 170 --~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 170 --APRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp --CCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred --ccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence 1121 1111123356678889976432 3333433444
No 248
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=55.81 E-value=1.1e+02 Score=27.27 Aligned_cols=222 Identities=8% Similarity=-0.003 Sum_probs=104.0
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
++.+|+... .++ .+.+||+. .+........... ...+++.. ++.||++... ...+-+||+ +.+. .
T Consensus 67 ~g~l~v~~~--~~~-----~i~~~~~~-g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~---~~~i~~~d~-~g~~-~ 132 (299)
T 2z2n_A 67 DGEVWFTEN--AAN-----KIGRITKK-GIIKEYTLPNPDS-APYGITEGPNGDIWFTEMN---GNRIGRITD-DGKI-R 132 (299)
T ss_dssp TSCEEEEET--TTT-----EEEEECTT-SCEEEEECSSTTC-CEEEEEECTTSCEEEEETT---TTEEEEECT-TCCE-E
T ss_pred CCCEEEeCC--CCC-----eEEEECCC-CcEEEEeCCCcCC-CceeeEECCCCCEEEEecC---CceEEEECC-CCCE-E
Confidence 678888764 222 35566665 3333222111111 12235554 5789994322 346889998 4221 0
Q ss_pred ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec
Q 012060 257 EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD 336 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~ 336 (472)
.+... . ....+..+. ..-+|.||++.. ..+.|.+||+ ++++........ ...+ .++ + ..-
T Consensus 133 ~~~~~--~--~~~~~~~i~-~~~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~~~~-~~~~---~~i---~-~~~ 192 (299)
T 2z2n_A 133 EYELP--N--KGSYPSFIT-LGSDNALWFTEN------QNNAIGRITE-SGDITEFKIPTP-ASGP---VGI---T-KGN 192 (299)
T ss_dssp EEECS--S--TTCCEEEEE-ECTTSCEEEEET------TTTEEEEECT-TCCEEEEECSST-TCCE---EEE---E-ECT
T ss_pred EecCC--C--CCCCCceEE-EcCCCCEEEEeC------CCCEEEEEcC-CCcEEEeeCCCC-CCcc---eeE---E-ECC
Confidence 00000 0 000011111 124678888642 1357999999 777322112110 1111 122 1 223
Q ss_pred CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEe--cCCeEEEeeccccccc
Q 012060 337 ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVG--RGGSLEVWSRVREGRN 413 (472)
Q Consensus 337 ~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~--~g~~~~v~~~~~~~~~ 413 (472)
++.||+....++.+...|. +++...+.. ..... .-..++.- +|+||++ .++.|.+|+.- -
T Consensus 193 ~g~l~v~~~~~~~i~~~~~----~g~~~~~~~-----~~~~~----~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g--- 255 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT----SGEITEFKI-----PTPNA----RPHAITAGAGIDLWFTEWGANKIGRLTSN-N--- 255 (299)
T ss_dssp TSSEEEEETTTTEEEEECT----TCCEEEEEC-----SSTTC----CEEEEEECSTTCEEEEETTTTEEEEEETT-T---
T ss_pred CCCEEEEccCCceEEEECC----CCcEEEEEC-----CCCCC----CceeEEECCCCCEEEeccCCceEEEECCC-C---
Confidence 5789977644433222121 344444421 11111 12244443 5789999 45889999762 1
Q ss_pred cccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEee
Q 012060 414 RSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 414 ~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
. ++.--+. .....+..+.+-.++|+++-. .+++-..+
T Consensus 256 -~-----~~~~~~~----~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 256 -I-----IEEYPIQ----IKSAEPHGICFDGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp -E-----EEEEECS----SSSCCEEEEEECSSCEEEEET-TTEEEEEE
T ss_pred -c-----eEEEeCC----CCCCccceEEecCCCEEEEec-CCcEEEEE
Confidence 0 1210011 123457777776678888754 35665554
No 249
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=51.66 E-value=92 Score=30.56 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=53.2
Q ss_pred eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCC--cc-ccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGA--FG-YSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~--~~-~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
+|.+||+.+++++.+|.. .. .| .....+-...||++.-.... .+ ..++|..||+.+.+++-+..-+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~---g~----~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~-- 117 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG---GF----LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-- 117 (373)
T ss_pred EEEEEECCCCeEEEEecC---CC----CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC--
Confidence 899999999876655543 11 23 44455667789997532110 01 24689999999988664443220
Q ss_pred CCCcc--cccccceeeeecCCeEEEEc
Q 012060 320 RSARF--GDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 320 ~~~R~--~~~~~d~~v~~~~~~iy~vG 344 (472)
.+|+ +..-.++++.-.+..||+..
T Consensus 118 -~~~~~~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 118 -APRFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred -ccccccCCCccceEECCCCCEEEEEe
Confidence 1111 11112344567788888775
No 250
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=51.39 E-value=58 Score=32.79 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=65.0
Q ss_pred CeEEEE-ecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeC--CCcc-ccceEEEEcC
Q 012060 229 TTVFSS-LVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAW--GAFG-YSGYVRMWDP 304 (472)
Q Consensus 229 g~IYAG-g~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~--g~~~-~~~sve~yDp 304 (472)
..+|+. .......+.|-++|+.|++++.+|.--. .| .+...+-...||++.... +..+ ..++|..||+
T Consensus 45 ~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-------~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-------LP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-------SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-------CC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 458882 1111124799999999988776664411 12 133334667799975321 1111 2468999999
Q ss_pred CCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc-CCCccccccc
Q 012060 305 RSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK-SGDIAMADLR 356 (472)
Q Consensus 305 ~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~-~g~~~~~dl~ 356 (472)
.+.+++-+..-+. ..+...+..-..+++...+.+||+.... ++.....|+.
T Consensus 117 ~t~~v~~~I~v~~-g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~ 168 (386)
T 3sjl_D 117 VTLLPTADIELPD-APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 168 (386)
T ss_dssp TTCCEEEEEEETT-CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred CCCeEEEEEECCC-ccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC
Confidence 9999886664331 0111111111123356778889987532 4444444443
No 251
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=50.06 E-value=1.6e+02 Score=27.26 Aligned_cols=114 Identities=10% Similarity=-0.043 Sum_probs=59.5
Q ss_pred EeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccccee----EEecCCeEEEEEEeCCCccccceEEE
Q 012060 226 DSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLT----WIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 226 ~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~----~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
.-+|.||+.+ -+.|-.||| +.+ -.|+.-.+.... ....+|.++++... ....|..
T Consensus 45 ~pdG~ilvs~-----~~~V~~~d~-~G~----------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~-----~~~~v~~ 103 (276)
T 3no2_A 45 TKAGEILFSY-----SKGAKMITR-DGR----------ELWNIAAPAGCEMQTARILPDGNALVAWCG-----HPSTILE 103 (276)
T ss_dssp CTTSCEEEEC-----BSEEEEECT-TSC----------EEEEEECCTTCEEEEEEECTTSCEEEEEES-----TTEEEEE
T ss_pred CCCCCEEEeC-----CCCEEEECC-CCC----------EEEEEcCCCCccccccEECCCCCEEEEecC-----CCCEEEE
Confidence 3467888832 246999999 633 337766542211 12256777766441 1246888
Q ss_pred EcCCCCeeeeEEcCCCCCCCCc-ccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEee
Q 012060 302 WDPRSGEVVWETNEPGSGRSAR-FGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYME 367 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R-~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~ 367 (472)
+|| +++.+|++.-........ .... ++ ...++.++++...++.+...|.. +.-.|+.=.
T Consensus 104 vd~-~Gk~l~~~~~~~~~~~~~~~~~~---v~-~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~ 163 (276)
T 3no2_A 104 VNM-KGEVLSKTEFETGIERPHAQFRQ---IN-KNKKGNYLVPLFATSEVREIAPN--GQLLNSVKL 163 (276)
T ss_dssp ECT-TSCEEEEEEECCSCSSGGGSCSC---CE-ECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC
T ss_pred EeC-CCCEEEEEeccCCCCcccccccC---ce-ECCCCCEEEEecCCCEEEEECCC--CCEEEEEEC
Confidence 998 788899987442111110 1111 12 23356666666555544332332 344466533
No 252
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=48.86 E-value=2.1e+02 Score=28.23 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=63.7
Q ss_pred CCeEEEEEEeCCCccc-------cceEEEEcCC---CCeeeeEEcCCCCCCC-----CcccccccceeeeecCCeEEEEc
Q 012060 280 TGVVLGSAIAWGAFGY-------SGYVRMWDPR---SGEVVWETNEPGSGRS-----ARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~-------~~sve~yDp~---~~~~vW~~~~~~~~~~-----~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
.|.|+|+.-.+.++.. .+.|-+||+. +++.+|...=+..... .+...+..||++.. +|.+|+.+
T Consensus 76 ~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~ 154 (334)
T 2p9w_A 76 SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAF 154 (334)
T ss_dssp CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEE
T ss_pred CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeC
Confidence 5888886322222111 3579999999 9998998762210000 00112346888887 78999988
Q ss_pred ccC-CCcccccccccC-C----CCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec-CCeEEEeec
Q 012060 345 SKS-GDIAMADLRNLG-E----DPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR-GGSLEVWSR 407 (472)
Q Consensus 345 g~~-g~~~~~dl~s~e-~----d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~-g~~~~v~~~ 407 (472)
... +... .+. . -.|-. ...+ ...+. ...||+.. +..|++.. ++.|..|+-
T Consensus 155 s~~~~~I~-----rV~pdG~~~~~~~~-~~~~---~~~~~----G~nGIv~~pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 155 ALGMPAIA-----RVSADGKTVSTFAW-ESGN---GGQRP----GYSGITFDPHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp EESSCEEE-----EECTTSCCEEEEEE-CCCC---SSSCC----SCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred CCCCCeEE-----EEeCCCCEEeeeee-cCCC---ccccc----CcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence 765 4322 222 1 12432 2211 12233 36789988 55677763 477877763
No 253
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=48.44 E-value=2.8e+02 Score=29.56 Aligned_cols=152 Identities=8% Similarity=0.016 Sum_probs=78.0
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee-------eeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV-------VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK 346 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~-------vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~ 346 (472)
+.|.+ +|.+.++|+.+ +.|..||..+++. +-+....+..... .+-.+ +...+. ++.++.
T Consensus 135 vafSP-DG~~LAsgs~D------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~----~V~sV--awSPdg-Laass~ 200 (588)
T 2j04_A 135 FEWNP-IESSIVVGNED------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKD----WVTHI--VWYEDV-LVAALS 200 (588)
T ss_dssp EEECS-SSSCEEEEETT------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC----CEEEE--EEETTE-EEEEET
T ss_pred EEEcC-CCCEEEEEcCC------CEEEEEECCCCccccccceeeeeeecccccccc----cEEEE--EEcCCc-EEEEeC
Confidence 34444 66777777744 4799999999852 2332211111111 12122 322333 667776
Q ss_pred CCCcccccccccCC-CCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCCeEEEeeccccccccccCCcceeecc
Q 012060 347 SGDIAMADLRNLGE-DPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNF 425 (472)
Q Consensus 347 ~g~~~~~dl~s~e~-d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~ 425 (472)
|.....-|+..-+. -.|..+.+ ..+. .=..++..++.|-++..+.|.+|.-... ....++.
T Consensus 201 D~tVrlWd~~~~~~~~~~~tL~~------~h~~----~V~svaFsg~~LASa~~~tIkLWd~~~~------~~~~~~~-- 262 (588)
T 2j04_A 201 NNSVFSMTVSASSHQPVSRMIQN------ASRR----KITDLKIVDYKVVLTCPGYVHKIDLKNY------SISSLKT-- 262 (588)
T ss_dssp TCCEEEECCCSSSSCCCEEEEEC------CCSS----CCCCEEEETTEEEEECSSEEEEEETTTT------EEEEEEC--
T ss_pred CCeEEEEECCCCccccceeeecc------cccC----cEEEEEEECCEEEEEeCCeEEEEECCCC------eEEEEEc--
Confidence 65433223222111 12444532 1221 1334444566666667799999996422 1101121
Q ss_pred ccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 426 VDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 426 ~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
| ..+.|.++++ -.|..+++=..+.|..||.-.
T Consensus 263 -g-----h~~~V~~va~~~s~d~~~La~a~edG~klw~~d 296 (588)
T 2j04_A 263 -G-----SLENFHIIPLNHEKESTILLMSNKTSYKVLLED 296 (588)
T ss_dssp -S-----CCSCCCEEEETTCSSCEEEEECSSCEEEEEESS
T ss_pred -C-----CCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec
Confidence 1 3457888899 777655555555555999854
No 254
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=43.78 E-value=2.1e+02 Score=26.89 Aligned_cols=186 Identities=10% Similarity=0.076 Sum_probs=90.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCC----Ccccc-C-CCCcCcccceeEEEE--eCCeEEEEecCCCCCceeEEEeC
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVAS----AHWTD-P-SDPRIYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDK 249 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t----~~W~~-~-a~m~~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp 249 (472)
++.||++-. .. +.+.++|+.. ..-.. + ..+..+. ++|+ .++.||+.- ...+.|+++|+
T Consensus 41 ~~~ly~~D~--~~-----~~I~~~~~~g~~~~~~~~~~~~~~~~~p~----glavd~~~~~ly~~d---~~~~~I~~~~~ 106 (316)
T 1ijq_A 41 SNRIYWSDL--SQ-----RMICSTQLDRAHGVSSYDTVISRDIQAPD----GLAVDWIHSNIYWTD---SVLGTVSVADT 106 (316)
T ss_dssp TTEEEEEET--TT-----TEEEEEEC--------CEEEECSSCSCCC----EEEEETTTTEEEEEE---TTTTEEEEEET
T ss_pred CCEEEEEEC--CC-----CcEEEEECCCCCCCcccEEEEeCCCCCcC----EEEEeecCCeEEEEE---CCCCEEEEEeC
Confidence 578998865 22 3455666654 11111 1 1222331 3555 478899831 12468999998
Q ss_pred CCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccc
Q 012060 250 STLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFA 329 (472)
Q Consensus 250 ~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~ 329 (472)
....... +.. -....|.-...-+.++.||++.. +. .+.|+++|+.... -+.........+ .+
T Consensus 107 ~g~~~~~-~~~-----~~~~~P~~iavdp~~g~ly~~d~--~~---~~~I~~~~~dG~~--~~~~~~~~~~~P---~g-- 168 (316)
T 1ijq_A 107 KGVKRKT-LFR-----ENGSKPRAIVVDPVHGFMYWTDW--GT---PAKIKKGGLNGVD--IYSLVTENIQWP---NG-- 168 (316)
T ss_dssp TSSSEEE-EEE-----CTTCCEEEEEEETTTTEEEEEEC--SS---SCEEEEEETTSCC--EEEEECSSCSCE---EE--
T ss_pred CCCceEE-EEE-----CCCCCcceEEeCCCCCEEEEEcc--CC---CCeEEEEcCCCCC--eEEEEECCCCCc---eE--
Confidence 7622100 000 00011222223346899999753 21 2579999986543 111111001222 12
Q ss_pred ceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeec
Q 012060 330 DVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSR 407 (472)
Q Consensus 330 d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~ 407 (472)
+++...+++||..-...+.....|+.. .+. ..+.... ... ..-.+|++.++.||++- ++.|.+++.
T Consensus 169 -la~d~~~~~lY~~D~~~~~I~~~d~dg--~~~-~~~~~~~-----~~~---~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 169 -ITLDLLSGRLYWVDSKLHSISSIDVNG--GNR-KTILEDE-----KRL---AHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp -EEEETTTTEEEEEETTTTEEEEEETTS--CSC-EEEEECT-----TTT---SSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred -EEEeccCCEEEEEECCCCeEEEEecCC--Cce-EEEeecC-----Ccc---CCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 223546899998876544333323321 222 1222100 000 02357888999999984 477877765
No 255
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=43.76 E-value=3.1e+02 Score=29.14 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=79.0
Q ss_pred ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccc
Q 012060 273 KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAM 352 (472)
Q Consensus 273 ~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~ 352 (472)
...|.+ +|.+.|+++.+| .|..||-.+ . +...++-..-..+..+++ +-.. +|++.++|+.+|....
T Consensus 90 ~vawSP-dG~~LAs~s~dg------~V~iwd~~~-~--l~~l~~~~~~~~~sv~sv---afSP-DG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 90 VCKPSP-IDDWMAVLSNNG------NVSVFKDNK-M--LTNLDSKGNLSSRTYHCF---EWNP-IESSIVVGNEDGELQF 155 (588)
T ss_dssp EEEECS-SSSCEEEEETTS------CEEEEETTE-E--EEECCCSSCSTTTCEEEE---EECS-SSSCEEEEETTSEEEE
T ss_pred EEEECC-CCCEEEEEeCCC------cEEEEeCCc-e--eeeccCCCccccccEEEE---EEcC-CCCEEEEEcCCCEEEE
Confidence 344554 778778877544 589999433 3 666552111223445553 2335 6777778998876442
Q ss_pred ccccccC-CCC-cEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEecCCeEEEeeccccccccccCC--cceeecccc
Q 012060 353 ADLRNLG-EDP-WVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGRGGSLEVWSRVREGRNRSCSE--GLFRRNFVD 427 (472)
Q Consensus 353 ~dl~s~e-~d~-W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~g~~~~v~~~~~~~~~~~~~~--~~~r~~~~~ 427 (472)
=|++.-. .++ -..+.. +.....|....=..|+.. +|.+-++.+..|.+|+--.- .+.+ +.++.
T Consensus 156 Wd~~~~~l~~~~~i~l~t----i~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~----~~~~~~~tL~~---- 223 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESS----IRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSAS----SHQPVSRMIQN---- 223 (588)
T ss_dssp EECCCCTTTCCCCEEEEE----EECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSS----SSCCCEEEEEC----
T ss_pred EECCCCccccccceeeee----eecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCC----ccccceeeecc----
Confidence 2222100 000 001111 110111100012223333 44222335589999986322 1111 01111
Q ss_pred ccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 428 RVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 428 ~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
..+..|.+++|-|.+|..+. + +.|.+|+..
T Consensus 224 ----~h~~~V~svaFsg~~LASa~-~-~tIkLWd~~ 253 (588)
T 2j04_A 224 ----ASRRKITDLKIVDYKVVLTC-P-GYVHKIDLK 253 (588)
T ss_dssp ----CCSSCCCCEEEETTEEEEEC-S-SEEEEEETT
T ss_pred ----cccCcEEEEEEECCEEEEEe-C-CeEEEEECC
Confidence 23457888888668999996 4 799999854
No 256
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=43.47 E-value=1.5e+02 Score=29.23 Aligned_cols=79 Identities=9% Similarity=-0.101 Sum_probs=48.0
Q ss_pred CeEEEEecCCCCCc-eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEe--CCCcc-ccceEEEEcC
Q 012060 229 TTVFSSLVCPHKEN-SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA--WGAFG-YSGYVRMWDP 304 (472)
Q Consensus 229 g~IYAGg~~~~~l~-sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~--~g~~~-~~~sve~yDp 304 (472)
..+|+.-.....+. .|-++|+.|++.+..|.--. .| .....+-...||++... .+..+ ..++|..||+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-------~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~ 103 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-------LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-------TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCC-------CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 35777322222233 88999999988666554411 12 23333467789996531 11111 2568999999
Q ss_pred CCCeeeeEEcC
Q 012060 305 RSGEVVWETNE 315 (472)
Q Consensus 305 ~~~~~vW~~~~ 315 (472)
.+++++-+..-
T Consensus 104 ~T~~vv~~I~v 114 (368)
T 1mda_H 104 VTFLPIADIEL 114 (368)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCEEEEEEC
Confidence 99999977753
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=42.73 E-value=2.3e+02 Score=28.23 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=76.3
Q ss_pred ccceeEEe-cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 271 VGKLTWIP-ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 271 ~m~~~~~~-~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
|.-+.+.+ -++.||++-- . +.|.++|+.+++ .+...+. ...+ .++++...++.||+....++.
T Consensus 139 P~~lavdp~~~g~Lyv~d~------~-~~I~~id~~~~~--v~~~~~~-~~~P------~~ia~d~~G~~lyvad~~~~~ 202 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGE------Q-HPTRLIDFEKEY--VSTVYSG-LSKV------RTICWTHEADSMIITNDQNNN 202 (430)
T ss_dssp CCEEEEETTEEEEEEEEEB------T-EEEEEEETTTTE--EEEEECC-CSCE------EEEEECTTSSEEEEEECCSCT
T ss_pred CCEEEECCCCCCeEEEEeC------C-CcEEEEECCCCE--EEEEecC-CCCc------ceEEEeCCCCEEEEEeCCCCc
Confidence 33344444 3688999732 1 589999999988 5444331 1222 233346656679988764432
Q ss_pred cccccccccCCCCcE---EeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEe--cCCeEEEeeccccccccccCCccee
Q 012060 350 IAMADLRNLGEDPWV---YMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVG--RGGSLEVWSRVREGRNRSCSEGLFR 422 (472)
Q Consensus 350 ~~~~dl~s~e~d~W~---~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~--~g~~~~v~~~~~~~~~~~~~~~~~r 422 (472)
....-+.......|. .++. +..+ .++++. +|.||++ +.+.|.+|+.-.- .+. .+++
T Consensus 203 ~~~~v~~~~~~g~~~~~~~l~~----~~~p--------~giavdp~~g~lyv~d~~~~~V~~~~~~~~----~~~-~~~~ 265 (430)
T 3tc9_A 203 DRPNNYILTRESGFKVITELTK----GQNC--------NGAETHPINGELYFNSWNAGQVFRYDFTTQ----ETT-PLFT 265 (430)
T ss_dssp TSEEEEEEEGGGTSCSEEEEEE----CSSC--------CCEEECTTTCCEEEEETTTTEEEEEETTTT----EEE-EEEE
T ss_pred ccceEEEEeCCCceeeeeeecc----CCCc--------eEEEEeCCCCEEEEEECCCCEEEEEECCCC----cEE-EEEE
Confidence 211000000122232 3332 2222 234444 6899988 4577888876311 000 1111
Q ss_pred eccccccccCCCCceEEEee--cCceEEEeeeccceeEEeec
Q 012060 423 RNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 423 ~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~ 462 (472)
..+ .+.-..|++ -|++|||+-.....|.+++.
T Consensus 266 ------~~~--~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 266 ------IQD--SGWEFHIQFHPSGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp ------CSS--SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ------cCC--CCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence 111 112334444 46678888777777777653
No 258
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=42.59 E-value=1.9e+02 Score=25.98 Aligned_cols=143 Identities=14% Similarity=0.083 Sum_probs=71.3
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
+.++.||++-. ..+.|.+||+..+.+. ...... ...+ ++ +++...++.||+.-...+.....|+.
T Consensus 45 ~~~~~ly~~d~------~~~~I~~~~~~g~~~~-~~~~~~-~~~p---~~---ia~d~~~~~lyv~d~~~~~I~~~~~~- 109 (267)
T 1npe_A 45 CVDKVVYWTDI------SEPSIGRASLHGGEPT-TIIRQD-LGSP---EG---IALDHLGRTIFWTDSQLDRIEVAKMD- 109 (267)
T ss_dssp TTTTEEEEEET------TTTEEEEEESSSCCCE-EEECTT-CCCE---EE---EEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred cCCCEEEEEEC------CCCEEEEEecCCCCcE-EEEECC-CCCc---cE---EEEEecCCeEEEEECCCCEEEEEEcC-
Confidence 35789999743 2358999999877521 222221 1122 22 22344578999887655443322221
Q ss_pred cCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC----CeEEEeeccccccccccCCcceeecccccccc
Q 012060 358 LGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG----GSLEVWSRVREGRNRSCSEGLFRRNFVDRVED 431 (472)
Q Consensus 358 ~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g----~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~ 431 (472)
...-..+.+ ..+. .-.++++. ++.||++-. +.|+++..-.. . ++-+..
T Consensus 110 --g~~~~~~~~--~~~~--------~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~------~----~~~~~~---- 163 (267)
T 1npe_A 110 --GTQRRVLFD--TGLV--------NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT------N----RRILAQ---- 163 (267)
T ss_dssp --SCSCEEEEC--SSCS--------SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC------C----CEEEEC----
T ss_pred --CCCEEEEEE--CCCC--------CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC------C----cEEEEE----
Confidence 111122221 0011 12456665 689999853 46776653211 0 111110
Q ss_pred CCCCceEEEeec--CceEEEeeeccceeEEee
Q 012060 432 SGRGAISRIDAG--GNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 432 ~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~ 461 (472)
...+.-..|++. |++||++-...+.|.+.+
T Consensus 164 ~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp TTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 111234555553 667777776666666655
No 259
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=38.72 E-value=1.5e+02 Score=30.58 Aligned_cols=29 Identities=3% Similarity=-0.011 Sum_probs=23.1
Q ss_pred CCceEEE--eecC--ceEEEeeeccceeEEeec
Q 012060 434 RGAISRI--DAGG--NRLFVSREDVEGIEVWES 462 (472)
Q Consensus 434 ~~~i~~~--~~gg--~r~f~~~~~~~~~~vw~~ 462 (472)
.+.|.++ .+-. .++|+|=..-..|-||+.
T Consensus 308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp SSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred cccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 4578888 4554 389999999999999985
No 260
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=37.59 E-value=1.3e+02 Score=29.71 Aligned_cols=117 Identities=7% Similarity=-0.119 Sum_probs=65.0
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEE--ecCC----CCCceeEEEeC
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSS--LVCP----HKENSVLLIDK 249 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAG--g~~~----~~l~sVE~YDp 249 (472)
...+|+.-. .+.+..+.+..+|+.+++-. ......+.- + ++.. ..+||++ ++.. .+-++|.+||+
T Consensus 31 ~~~~yV~~~---~~~~~~d~vsvID~~t~~v~--~~i~vG~~P-~-i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~ 103 (368)
T 1mda_H 31 SRRSHITLP---AYFAGTTENWVSCAGCGVTL--GHSLGAFLS-L-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp TTEEEEEEC---TTTCSSEEEEEEETTTTEEE--EEEEECTTC-E-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred CCeEEEECC---ccCCccceEEEEECCCCeEE--EEEeCCCCC-c-eEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 356787754 11112227778898877643 333333332 3 5544 3369993 3221 23689999999
Q ss_pred CCcccccccccccCCCcccc-cccceeEEecCCeEEEEEEeCCCccccceEEE--EcCCC
Q 012060 250 STLQISSEIGRQSGASSKNM-AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM--WDPRS 306 (472)
Q Consensus 250 ~t~~~~~~~~~~~~~~W~~v-~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~--yDp~~ 306 (472)
.|++++.+|.-..+..|... .|-.+...+-+..|||+-. ++ .+.|.. +|+.+
T Consensus 104 ~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~--~~---~~~v~V~~iD~~t 158 (368)
T 1mda_H 104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF--GS---SAAAGLSVPGASD 158 (368)
T ss_dssp TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC--SS---SCEEEEEETTTEE
T ss_pred CCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEcc--CC---CCeEEEEEEchhh
Confidence 99998887643111112212 1333344455668888732 11 246777 99988
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=37.31 E-value=2.5e+02 Score=25.91 Aligned_cols=230 Identities=8% Similarity=-0.022 Sum_probs=105.6
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
++.||++-- .+ ..+.++|+.... ....... . ...+++.. ++.||+.-.... ...|-+||+.+.+
T Consensus 42 ~g~lyv~d~--~~-----~~I~~~d~~g~~-~~~~~~~--~-~p~gia~~~dG~l~vad~~~~-~~~v~~~d~~~g~--- 106 (306)
T 2p4o_A 42 DGTIFVTNH--EV-----GEIVSITPDGNQ-QIHATVE--G-KVSGLAFTSNGDLVATGWNAD-SIPVVSLVKSDGT--- 106 (306)
T ss_dssp TSCEEEEET--TT-----TEEEEECTTCCE-EEEEECS--S-EEEEEEECTTSCEEEEEECTT-SCEEEEEECTTSC---
T ss_pred CCCEEEEeC--CC-----CeEEEECCCCce-EEEEeCC--C-CceeEEEcCCCcEEEEeccCC-cceEEEEcCCCCe---
Confidence 567887753 12 245667766532 2111111 1 12236654 567998321111 1247788987733
Q ss_pred ccccccCCCcccccc---ccee---EEecCCeEEEEEEeCCCccccceEEEEcCCCCe-eeeEEcCCCC----CCCCccc
Q 012060 257 EIGRQSGASSKNMAV---GKLT---WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE-VVWETNEPGS----GRSARFG 325 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~---m~~~---~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~-~vW~~~~~~~----~~~~R~~ 325 (472)
.+.+.. .+.. ....++.+|++-. ..+.|.++|+.+++ .+|.....+. ...-..-
T Consensus 107 ---------~~~~~~~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 107 ---------VETLLTLPDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp ---------EEEEEECTTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ---------EEEEEeCCCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 111111 1111 0123556777531 13589999998763 2343221100 0001112
Q ss_pred ccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCe
Q 012060 326 DSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGS 401 (472)
Q Consensus 326 ~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~ 401 (472)
.++ ...++.||+.--..+.....|+..-. ......+.. ...+ .++++- +|+||++- ++.
T Consensus 172 ngi-----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P--------~gi~vd~dG~l~va~~~~~~ 234 (306)
T 2p4o_A 172 NGL-----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNI--------DDFAFDVEGNLYGATHIYNS 234 (306)
T ss_dssp EEE-----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCC--------SSEEEBTTCCEEEECBTTCC
T ss_pred CCc-----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCC--------CCeEECCCCCEEEEeCCCCe
Confidence 232 45567888776544333222222100 001122222 1112 234433 57899985 578
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-----ceEEEeeeccceeEEeecCCCCcc
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-----NRLFVSREDVEGIEVWESSNLSGV 468 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-----~r~f~~~~~~~~~~vw~~~~~~~~ 468 (472)
|.++++-- + +.+ +...+. .....+.++||| ++|||+-..-...++ ...+.+|.
T Consensus 235 V~~~~~~G--------~-~~~---~~~~~~-~~~~p~~~a~~g~~~d~~~LyVt~~~~~~~~~-~~~~~~g~ 292 (306)
T 2p4o_A 235 VVRIAPDR--------S-TTI---IAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPP-PTGVVPAN 292 (306)
T ss_dssp EEEECTTC--------C-EEE---EECGGG-TCTTEEEEEECCSTTTTTEEEEEECTTSSSCC-TTCCCCEE
T ss_pred EEEECCCC--------C-EEE---Eeeccc-ccCCceEEEEecccCCCCEEEEECCCCcccCC-Ccccccce
Confidence 99887521 0 101 111111 123588999985 799999765333333 23334444
No 262
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=36.90 E-value=4.2e+02 Score=28.34 Aligned_cols=140 Identities=11% Similarity=-0.087 Sum_probs=71.5
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccC--CCCcCcccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP--SDPRIYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~--a~m~~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
.++.||+.-. . .+.+.++++....-..+ ..+..++ ++++ .++.||..- .+....|+++++...
T Consensus 463 ~~g~LY~tD~--~-----~~~I~v~d~dg~~~~~l~~~~~~~P~----giavDp~~g~ly~td--~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 463 IHSNIYWTDS--V-----LGTVSVADTKGVKRKTLFREQGSKPR----AIVVDPVHGFMYWTD--WGTPAKIKKGGLNGV 529 (699)
T ss_dssp SSSBCEECCT--T-----TSCEEEEBSSSCCEEEECCCSSCCCC----CEECCSSSSCCEECC--CSSSCCEEBCCSSSC
T ss_pred eCCcEEEEec--c-----CCeEEEEecCCCceEEEEeCCCCCcc----eEEEccCCCcEEEcc--cCCCCeEEEEeCCCC
Confidence 4678888643 1 13456666654432222 2344454 2554 468899831 112367899888652
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
. ...|.. -....|--+.+-+.++.||++=. ..+.|+.+|+.... +-.+... ...-...+++
T Consensus 530 ~-~~~l~~-----~~l~~PnGlavd~~~~~LY~aD~------~~~~I~~~d~dG~~-~~~~~~~--~~~~~~P~gl---- 590 (699)
T 1n7d_A 530 D-IYSLVT-----ENIQWPNGITLDLLSGRLYWVDS------KLHSISSIDVNGGN-RKTILED--EKRLAHPFSL---- 590 (699)
T ss_dssp C-CCEESC-----SSCSSCCCEEECTTTCCEEEEET------TTTEEEEECSSSSC-CEEECCC--SSSCSSCCCC----
T ss_pred C-eeEEEe-----CCCCCccEEEEeccCCEEEEEec------CCCeEEEEccCCCc-eEEEEec--CCcCCCceEe----
Confidence 1 000100 00111323344446789999732 24589999997543 1222221 0111223454
Q ss_pred eeecCCeEEEEcccCCC
Q 012060 333 VDVDELTLFKICSKSGD 349 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~ 349 (472)
++..+.||++-...+.
T Consensus 591 -avd~~~lywtd~~~~~ 606 (699)
T 1n7d_A 591 -AVFEDKVFWTDIINEA 606 (699)
T ss_dssp -EEETTEEEEECSTTTC
T ss_pred -EEECCEEEEEeCCCCe
Confidence 6667899988754443
No 263
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=34.95 E-value=3.5e+02 Score=26.82 Aligned_cols=64 Identities=14% Similarity=0.273 Sum_probs=44.3
Q ss_pred CeEEEEE-C----CEEEEec--CCeEEEeeccccccccccCCcceeecc-------ccccccCCCCceEEEeecC---ce
Q 012060 384 NKLIHCY-K----NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNF-------VDRVEDSGRGAISRIDAGG---NR 446 (472)
Q Consensus 384 ~~~~~~~-~----g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~-------~~~~~~~~~~~i~~~~~gg---~r 446 (472)
--+|+++ . |.||++- ....-||..-.. .-+...| ++...+..|-.|+.+..|. .-
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~--------~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~G 302 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK--------NKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFG 302 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT--------CCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTC
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC--------CcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCc
Confidence 4677776 3 5799984 578999987411 0022222 5667778888899999986 38
Q ss_pred EEEeeeccc
Q 012060 447 LFVSREDVE 455 (472)
Q Consensus 447 ~f~~~~~~~ 455 (472)
|||+..+.+
T Consensus 303 l~V~qDg~n 311 (355)
T 3amr_A 303 IFVAQDGEN 311 (355)
T ss_dssp EEEEEESSC
T ss_pred EEEEecCCc
Confidence 999999864
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=34.87 E-value=3.3e+02 Score=26.50 Aligned_cols=211 Identities=9% Similarity=-0.008 Sum_probs=105.0
Q ss_pred eeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccccee
Q 012060 198 SSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLT 275 (472)
Q Consensus 198 ve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~ 275 (472)
+.+.|+.......+.+- .+.-. |++.. ++.||..-. ..+.|.++|+.......-+.. ....|.-+.
T Consensus 98 I~~i~~~~~~~~~~~~~--~~~~~-gl~~d~~~~~ly~~D~---~~~~I~r~~~~g~~~~~~~~~------~~~~p~gla 165 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLNN--LENAI-ALDFHHRRELVFWSDV---TLDRILRANLNGSNVEEVVST------GLESPGGLA 165 (386)
T ss_dssp EEEECTTSCCCEEEECS--CSCEE-EEEEETTTTEEEEEET---TTTEEEEEETTSCCEEEEECS------SCSCCCCEE
T ss_pred ceeeccCCCcEEEEecC--CCccE-EEEEecCCCeEEEEeC---CCCcEEEEecCCCCcEEEEeC------CCCCccEEE
Confidence 44556655554443321 12223 36654 578998311 135788999987321110000 011222233
Q ss_pred EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC-CCccccc
Q 012060 276 WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS-GDIAMAD 354 (472)
Q Consensus 276 ~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~-g~~~~~d 354 (472)
.-..++.||++-. ..+.|+++|+.... -+......+..++ ++++...++.||..--.. +.....+
T Consensus 166 vd~~~g~lY~~d~------~~~~I~~~~~dg~~--~~~l~~~~l~~P~------giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 166 VDWVHDKLYWTDS------GTSRIEVANLDGAH--RKVLLWQSLEKPR------AIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp EETTTTEEEEEET------TTTEEEECBTTSCS--CEEEECSSCSCEE------EEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCeEEEEcC------CCCeEEEEeCCCCc--eEEeecCCCCCCc------EEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 3346889998732 23579999987664 1222111123332 333455689999874322 2111111
Q ss_pred ccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccc
Q 012060 355 LRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVE 430 (472)
Q Consensus 355 l~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~ 430 (472)
+.. +..-+.+.. .+. .-.+|++ -+++||++- .+.|++++... ..|+-++..
T Consensus 232 ~dG--~~~~~~~~~---~~~--------~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG----------~~~~~~~~~-- 286 (386)
T 3v65_B 232 MDG--SGRRIIADT---HLF--------WPNGLTIDYAGRRMYWVDAKHHVIERANLDG----------SHRKAVISQ-- 286 (386)
T ss_dssp TTS--CSCEEEECS---SCS--------CEEEEEEEGGGTEEEEEETTTTEEEEECTTS----------CSCEEEECS--
T ss_pred CCC--CCcEEEEEC---CCC--------CeeeEEEeCCCCEEEEEECCCCEEEEEeCCC----------CeeEEEEEC--
Confidence 110 111111211 111 1346776 489999984 46788876421 123333322
Q ss_pred cCCCCceEEEeecCceEEEeeeccceeEEee
Q 012060 431 DSGRGAISRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 431 ~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
..+.-..|++-+++||++-.....|....
T Consensus 287 --~~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 287 --GLPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp --SCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred --CCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 13345566667788998877777766665
No 265
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=33.87 E-value=2.7e+02 Score=25.16 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 275 TWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 275 ~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
.|.+-++.||+++.. .+.|.+|||.++.
T Consensus 34 ~~d~~g~~l~~~~~~------~~~i~~~~~~~~~ 61 (296)
T 3e5z_A 34 VYVPARSAVIFSDVR------QNRTWAWSDDGQL 61 (296)
T ss_dssp EEEGGGTEEEEEEGG------GTEEEEEETTSCE
T ss_pred eEeCCCCEEEEEeCC------CCEEEEEECCCCe
Confidence 344455558887642 3579999999883
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=32.68 E-value=3.5e+02 Score=26.24 Aligned_cols=185 Identities=8% Similarity=0.024 Sum_probs=94.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccC--CCCcCcccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP--SDPRIYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~--a~m~~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~~ 253 (472)
++.||.+-- .. +.+.++++.......+ ..+..+. ++++ .++.||..-. ..+.|+++|+....
T Consensus 127 ~~~ly~~D~--~~-----~~I~r~~~~g~~~~~~~~~~~~~p~----glavd~~~g~lY~~d~---~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 127 RELVFWSDV--TL-----DRILRANLNGSNVEEVVSTGLESPG----GLAVDWVHDKLYWTDS---GTSRIEVANLDGAH 192 (386)
T ss_dssp TTEEEEEET--TT-----TEEEEEETTSCCEEEEECSSCSCCC----CEEEETTTTEEEEEET---TTTEEEECBTTSCS
T ss_pred CCeEEEEeC--CC-----CcEEEEecCCCCcEEEEeCCCCCcc----EEEEEeCCCeEEEEcC---CCCeEEEEeCCCCc
Confidence 578898753 11 3466777766544332 2232332 2554 4788998311 14589999987622
Q ss_pred cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
...-+.. ....|.-+..-+.++.||++-. + ....|+++|+..... -...... ...+. |. ++
T Consensus 193 ~~~l~~~------~l~~P~giavdp~~g~ly~td~--~---~~~~I~r~~~dG~~~-~~~~~~~-~~~Pn-Gl-----av 253 (386)
T 3v65_B 193 RKVLLWQ------SLEKPRAIALHPMEGTIYWTDW--G---NTPRIEASSMDGSGR-RIIADTH-LFWPN-GL-----TI 253 (386)
T ss_dssp CEEEECS------SCSCEEEEEEETTTTEEEEEEC--S---SSCEEEEEETTSCSC-EEEECSS-CSCEE-EE-----EE
T ss_pred eEEeecC------CCCCCcEEEEEcCCCeEEEecc--C---CCCEEEEEeCCCCCc-EEEEECC-CCCee-eE-----EE
Confidence 0000000 0011222223346899999742 1 125799999876541 1222221 12222 22 23
Q ss_pred eecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEe--cCCeEEEeecc
Q 012060 334 DVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVG--RGGSLEVWSRV 408 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~--~g~~~~v~~~~ 408 (472)
...+++||++=...+.....|+. +.+.-+.+.. .+ . .-.+|++.++.||++ +++.|..++..
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~---~~--~------~P~giav~~~~ly~td~~~~~V~~~~~~ 317 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQ---GL--P------HPFAITVFEDSLYWTDWHTKSINSANKF 317 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTT--SCSCEEEECS---SC--S------SEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred eCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEEC---CC--C------CceEEEEECCEEEEeeCCCCeEEEEECC
Confidence 55689999886544332222221 1222222221 01 1 245788899999998 45777777643
No 267
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=32.50 E-value=3.7e+02 Score=26.46 Aligned_cols=202 Identities=14% Similarity=0.043 Sum_probs=90.4
Q ss_pred ccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeE
Q 012060 170 NITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVL 245 (472)
Q Consensus 170 ~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE 245 (472)
.+.++++- ++.+++.|+ .+| ++-.||..+.+- +......+..+.+++.. ++. |++|+.+ .+|-
T Consensus 151 ~V~~v~~~p~~~~~las~s--~Dg-----~v~iwD~~~~~~--~~~~~~~~~~v~~v~wspdg~~lasgs~d----g~v~ 217 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCL--ADG-----SIAVLQVTETVK--VCATLPSTVAVTSVCWSPKGKQLAVGKQN----GTVV 217 (434)
T ss_dssp SEEEEEECSSCTTEEEEEE--TTS-----CEEEEEESSSEE--EEEEECGGGCEEEEEECTTSSCEEEEETT----SCEE
T ss_pred ceEEEEECCCCCCEEEEEE--CCC-----eEEEEEcCCCcc--eeeccCCCCceeEEEEcCCCCEEEEEcCC----CcEE
Confidence 34445443 256788787 455 345566554421 11111112233335544 444 5546554 3688
Q ss_pred EEeCCCcccccccccccC-CCcccccccceeEEecCCeEEE-EEEeCCCccccceEEEEcCCCC----eeeeEEcCCCCC
Q 012060 246 LIDKSTLQISSEIGRQSG-ASSKNMAVGKLTWIPATGVVLG-SAIAWGAFGYSGYVRMWDPRSG----EVVWETNEPGSG 319 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~-~~W~~v~~m~~~~~~~~g~Lyv-~Gg~~g~~~~~~sve~yDp~~~----~~vW~~~~~~~~ 319 (472)
.||++ .++...+..... ..-+........|.+ ++.+++ ....+|.......+..||.+.. ...|........
T Consensus 218 iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~ 295 (434)
T 2oit_A 218 QYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCY 295 (434)
T ss_dssp EECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSC
T ss_pred EEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCC
Confidence 89988 232222222100 000112335566765 333333 2333443223457999998765 233554433101
Q ss_pred --CCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEE--eecCCCC-cccCCCCCCCcCeEEEE
Q 012060 320 --RSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVY--MEDKNPS-MISSSGNNNGENKLIHC 389 (472)
Q Consensus 320 --~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~--~~~~~~~-m~~~~~~~~~~~~~~~~ 389 (472)
...|.. .+ -+.--..-+.+|+..+.+.+..... ++-+...|.. ..+..++ |+....++++.-.|+++
T Consensus 296 ~~~~~r~~-~~-~~~~l~dw~l~~v~s~~s~dv~vl~-~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~ 367 (434)
T 2oit_A 296 GSCTERQH-HY-YLSYIEEWDLVLAASAASTEVSILA-RQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVV 367 (434)
T ss_dssp CCCSSSCC-CE-EEEEEGGGTEEEEEETTCSBCEEEE-ECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEE
T ss_pred CCCCCcCc-ce-eeehhccCCEEEEecCCCCceeEEE-ecCCCCccEEEeccccccccccCCCCCCCceeeEEEE
Confidence 133322 21 0111133466676667776655422 1112225844 3444442 33333445666677765
No 268
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=32.21 E-value=44 Score=33.05 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=39.1
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC-CCCCCcccccccceeeee-------cCCeEEEEcccCCCcc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG-SGRSARFGDSFADVDVDV-------DELTLFKICSKSGDIA 351 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~-~~~~~R~~~~~~d~~v~~-------~~~~iy~vGg~~g~~~ 351 (472)
++.+|++.. + ..+.+..+|+.++...|....|. ...++-.+++ +-++ .++.+| +|+++|.+.
T Consensus 55 ~~~~~vv~p----~-~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~----~pvv~~~~~~~~~g~Vy-~Gs~~g~l~ 124 (339)
T 2be1_A 55 TYETLIIEP----F-GDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKT----NIVVNDSGKIVEDEKVY-TGSMRTIMY 124 (339)
T ss_dssp SSEEEEECC----S-TTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEEC----C----------CCEEEE-ECEEEEEEE
T ss_pred CCcEEEEEE----C-CCCEEEEEECCCCcEEeeeccccceeccccccCC----CceeecccccccCCEEE-EEecCCEEE
Confidence 456666531 1 24678999999998556555441 0011111111 0122 477777 788887766
Q ss_pred cccccccCCCCcEE
Q 012060 352 MADLRNLGEDPWVY 365 (472)
Q Consensus 352 ~~dl~s~e~d~W~~ 365 (472)
..|+++=+ =.|++
T Consensus 125 ald~~tG~-~~W~~ 137 (339)
T 2be1_A 125 TINMLNGE-IISAF 137 (339)
T ss_dssp EEETTTCC-EEEEE
T ss_pred EEECCCCc-EEEEE
Confidence 65655422 23554
No 269
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=31.04 E-value=2.8e+02 Score=24.54 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=104.0
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
-++.||+... .+ ..+..||+. .+.......... ....+++.. ++.||++... .+.|-+||+.. +.
T Consensus 29 ~~g~l~v~~~--~~-----~~v~~~~~~-~~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~---~~~v~~~d~~g-~~- 94 (300)
T 2qc5_A 29 EDGKVWFTQH--KA-----NKISSLDQS-GRIKEFEVPTPD-AKVMCLIVSSLGDIWFTENG---ANKIGKLSKKG-GF- 94 (300)
T ss_dssp TTSCEEEEET--TT-----TEEEEECTT-SCEEEEECSSTT-CCEEEEEECTTSCEEEEETT---TTEEEEECTTS-CE-
T ss_pred CCCCEEEEcC--CC-----CeEEEECCC-CceEEEECCCCC-CcceeEEECCCCCEEEEecC---CCeEEEECCCC-Ce-
Confidence 3678888764 12 245567766 444432111111 122235553 4679994322 24688999873 31
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.... . ...+..+.. .-+|.||++... .+.|.+|||. +++. +..-+.....+ .+ +++.
T Consensus 95 ~~~~~~~-~---~~~~~~i~~-~~~g~l~v~~~~------~~~i~~~~~~-g~~~-~~~~~~~~~~~---~~---i~~d- 154 (300)
T 2qc5_A 95 TEYPLPQ-P---DSGPYGITE-GLNGDIWFTQLN------GDRIGKLTAD-GTIY-EYDLPNKGSYP---AF---ITLG- 154 (300)
T ss_dssp EEEECSS-T---TCCEEEEEE-CSTTCEEEEETT------TTEEEEECTT-SCEE-EEECSSTTCCE---EE---EEEC-
T ss_pred EEecCCC-C---CCCCccceE-CCCCCEEEEccC------CCeEEEECCC-CCEE-EccCCCCCCCc---ee---EEEC-
Confidence 1111100 0 001111111 146889987431 3479999998 6633 12112101111 22 2223
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeecccccc
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVREGR 412 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~ 412 (472)
-++.||+....++.+...|. +++...+.. ..... .-.+++.- +|+||++. ++.|.+|+.- -
T Consensus 155 ~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~-----~~~~~----~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g-- 218 (300)
T 2qc5_A 155 SDNALWFTENQNNSIGRITN----TGKLEEYPL-----PTNAA----APVGITSGNDGALWFVEIMGNKIGRITTT-G-- 218 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT----TCCEEEEEC-----SSTTC----CEEEEEECTTSSEEEEETTTTEEEEECTT-C--
T ss_pred CCCCEEEEecCCCeEEEECC----CCcEEEeeC-----CCCCC----CcceEEECCCCCEEEEccCCCEEEEEcCC-C--
Confidence 35778876643333222111 344444431 11111 12344443 57899985 4678888762 1
Q ss_pred ccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeec
Q 012060 413 NRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWES 462 (472)
Q Consensus 413 ~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~ 462 (472)
. +.+-.. + .....+..|.+.. ++|||+-....+|-++..
T Consensus 219 ------~-~~~~~~---~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 219 ------E-ISEYDI---P-TPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp ------C-EEEEEC---S-STTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ------c-EEEEEC---C-CCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 0 111000 0 1233466666653 257777655566666653
No 270
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=30.98 E-value=19 Score=21.99 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=12.1
Q ss_pred cchHHHHhhhhhcC
Q 012060 85 FSKQELADEALYYG 98 (472)
Q Consensus 85 ~~v~~Ll~eA~~~q 98 (472)
.++|.||++|+|+.
T Consensus 3 ~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 3 MNIQMLLEAADYLE 16 (26)
T ss_dssp CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 58999999999964
No 271
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.10 E-value=4.3e+02 Score=25.81 Aligned_cols=146 Identities=8% Similarity=0.089 Sum_probs=72.6
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCC-Ccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSG-DIAMADLRN 357 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g-~~~~~dl~s 357 (472)
-++.||++.. ..+.|.+||+.++++. ++... ...++ +++...++.||+.....+ .... +..
T Consensus 140 ~~g~lyv~d~------~~~~I~~id~~~g~~~-~~~~~--~~~~~-------ia~~~~g~~l~~~d~~~~~~I~~--~d~ 201 (409)
T 3hrp_A 140 GNNTVLAYQR------DDPRVRLISVDDNKVT-TVHPG--FKGGK-------PAVTKDKQRVYSIGWEGTHTVYV--YMK 201 (409)
T ss_dssp STTEEEEEET------TTTEEEEEETTTTEEE-EEEET--CCBCB-------CEECTTSSEEEEEBSSTTCEEEE--EEG
T ss_pred CCCCEEEEec------CCCcEEEEECCCCEEE-Eeecc--CCCCc-------eeEecCCCcEEEEecCCCceEEE--EEc
Confidence 4788999854 2357999999998732 22222 12222 334666778887765332 2221 111
Q ss_pred cCCCCcE--EeecCCC-CcccCCCCCCCcCeEEEEE--CCEEEEecC-CeEEEeeccccccccccCCcceeecccccccc
Q 012060 358 LGEDPWV--YMEDKNP-SMISSSGNNNGENKLIHCY--KNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVED 431 (472)
Q Consensus 358 ~e~d~W~--~~~~~~~-~m~~~~~~~~~~~~~~~~~--~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~ 431 (472)
...|. .+..... .... -.++++. +|+||++.. +.|..|+.-.- ...++... +..
T Consensus 202 --~~~~~~~~~g~~~~~~~~~--------p~~iav~p~~g~lyv~d~~~~I~~~d~~~~------~~~~~~~~--~~~-- 261 (409)
T 3hrp_A 202 --ASGWAPTRIGQLGSTFSGK--------IGAVALDETEEWLYFVDSNKNFGRFNVKTQ------EVTLIKQL--ELS-- 261 (409)
T ss_dssp --GGTTCEEEEEECCTTSCSC--------CCBCEECTTSSEEEEECTTCEEEEEETTTC------CEEEEEEC--CCC--
T ss_pred --CCCceeEEeeeccchhcCC--------cEEEEEeCCCCeEEEEECCCcEEEEECCCC------CEEEEecc--ccc--
Confidence 12232 3322111 1111 1234443 689999754 56777765311 01111110 000
Q ss_pred CCCCce--EEEeec--CceEEEeeeccceeEEeec
Q 012060 432 SGRGAI--SRIDAG--GNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 432 ~~~~~i--~~~~~g--g~r~f~~~~~~~~~~vw~~ 462 (472)
...+.- ..+++- +++||++-.....|-+|+.
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP 296 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence 011111 256665 5788988777777888763
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=27.18 E-value=5.9e+02 Score=27.04 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=83.7
Q ss_pred eeeecCCCCccccCCCCc---CcccceeEEE-EeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccc---
Q 012060 198 SSSRHVASAHWTDPSDPR---IYRATVTAIA-DSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMA--- 270 (472)
Q Consensus 198 ve~ydp~t~~W~~~a~m~---~~R~~~~ava-~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~--- 270 (472)
+-+||+.+.+|....... ..-..+.+++ ..+|.|++|... +.+-+|||.+.+ ++...
T Consensus 471 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~----~Gl~~~~~~~~~------------~~~~~~~~ 534 (781)
T 3v9f_A 471 VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG----GGVGIYTPDMQL------------VRKFNQYE 534 (781)
T ss_dssp EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS----SCEEEECTTCCE------------EEEECTTT
T ss_pred eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC----CCEEEEeCCCCe------------EEEccCCC
Confidence 557888888886643221 0011121233 346789986432 246678988733 22221
Q ss_pred ---ccceeEE--ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC--CCCCCCcccccccceeeeecCCeEEEE
Q 012060 271 ---VGKLTWI--PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP--GSGRSARFGDSFADVDVDVDELTLFKI 343 (472)
Q Consensus 271 ---~m~~~~~--~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~--~~~~~~R~~~~~~d~~v~~~~~~iy~v 343 (472)
......+ ..+|.|+++.. + +-+.+|||.+++ ++.... + ...... .++ +...++.|++.
T Consensus 535 ~l~~~~i~~i~~d~~g~lWi~T~-~------Glv~~~d~~~~~--~~~~~~~~g-l~~~~i-~~i----~~d~~g~lW~~ 599 (781)
T 3v9f_A 535 GFCSNTINQIYRSSKGQMWLATG-E------GLVCFPSARNFD--YQVFQRKEG-LPNTHI-RAI----SEDKNGNIWAS 599 (781)
T ss_dssp TCSCSCEEEEEECTTSCEEEEET-T------EEEEESCTTTCC--CEEECGGGT-CSCCCC-CEE----EECSSSCEEEE
T ss_pred CCCCCeeEEEEECCCCCEEEEEC-C------CceEEECCCCCc--EEEccccCC-CCCceE-EEE----EECCCCCEEEE
Confidence 1111111 15677887642 1 123899999998 544322 1 111111 122 22347888865
Q ss_pred cccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeE-EE-EECCEEEEecCCeEEEeecccc
Q 012060 344 CSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKL-IH-CYKNQVFVGRGGSLEVWSRVRE 410 (472)
Q Consensus 344 Gg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~-~~-~~~g~l~~~~g~~~~v~~~~~~ 410 (472)
+ ..|- ...|. ++.++....... .+.... .... ++ .-+|.||..+...+-++++-..
T Consensus 600 t-~~Gl-~~~~~---~~~~~~~~~~~d-Gl~~~~-----f~~~~~~~~~~G~l~~g~~~Gl~~f~p~~~ 657 (781)
T 3v9f_A 600 T-NTGI-SCYIT---SKKCFYTYDHSN-NIPQGS-----FISGCVTKDHNGLIYFGSINGLCFFNPDIA 657 (781)
T ss_dssp C-SSCE-EEEET---TTTEEEEECGGG-TCCSSC-----EEEEEEEECTTSCEEEEETTEEEEECSCCG
T ss_pred c-CCce-EEEEC---CCCceEEecccC-Cccccc-----cccCceEECCCCEEEEECCCceEEEChhhc
Confidence 4 3331 11111 144454443211 111111 1112 22 2378999999999999987544
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=27.17 E-value=3.7e+02 Score=26.65 Aligned_cols=133 Identities=8% Similarity=0.004 Sum_probs=69.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCC-CceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHK-ENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~-l~sVE~YDp~t~~~ 254 (472)
++.||++-- + +.+-++|+...+...+.+.. .+-. ++++. ++ .||+.-+..+. ...+-.+++...
T Consensus 149 ~g~Lyv~d~----~----~~I~~id~~~~~v~~~~~~~-~~P~--~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-- 215 (430)
T 3tc9_A 149 HNHLYLVGE----Q----HPTRLIDFEKEYVSTVYSGL-SKVR--TICWTHEADSMIITNDQNNNDRPNNYILTRESG-- 215 (430)
T ss_dssp EEEEEEEEB----T----EEEEEEETTTTEEEEEECCC-SCEE--EEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT--
T ss_pred CCeEEEEeC----C----CcEEEEECCCCEEEEEecCC-CCcc--eEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc--
Confidence 378898753 1 56778899887776654311 1111 35554 34 49994332222 335667776541
Q ss_pred ccccccccCCCcc---ccc----ccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee-eeEEcCCCCCCCCcccc
Q 012060 255 SSEIGRQSGASSK---NMA----VGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV-VWETNEPGSGRSARFGD 326 (472)
Q Consensus 255 ~~~~~~~~~~~W~---~v~----~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~-vW~~~~~~~~~~~R~~~ 326 (472)
|. .++ |.-....+.+|.||++-. ..+.|.+|||.++.. ....... ...++ +
T Consensus 216 -----------~~~~~~l~~~~~p~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~~~~--~~~P~-g- 274 (430)
T 3tc9_A 216 -----------FKVITELTKGQNCNGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFTIQD--SGWEF-H- 274 (430)
T ss_dssp -----------SCSEEEEEECSSCCCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEECSS--SSCCE-E-
T ss_pred -----------eeeeeeeccCCCceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEEcCC--CCcce-e-
Confidence 21 111 111122234789998732 135799999998873 1222221 12222 1
Q ss_pred cccceeeeecCCeEEEEcccCC
Q 012060 327 SFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 327 ~~~d~~v~~~~~~iy~vGg~~g 348 (472)
+++...++.||++--.+.
T Consensus 275 ----ia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 275 ----IQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp ----EEECTTSSEEEEEETTTT
T ss_pred ----EEEcCCCCEEEEEECCCC
Confidence 223555556888765443
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=26.92 E-value=5.9e+02 Score=27.01 Aligned_cols=170 Identities=8% Similarity=0.039 Sum_probs=84.8
Q ss_pred eeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc-----
Q 012060 198 SSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV----- 271 (472)
Q Consensus 198 ve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~----- 271 (472)
+-+||+.+.++............+.+++.- ++.|++|.. +.+-+|||.+.+ |+....
T Consensus 429 l~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-----~Gl~~~~~~~~~------------~~~~~~~~~~~ 491 (781)
T 3v9f_A 429 ISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-----AGVFVIDLASKK------------VIHHYDTSNSQ 491 (781)
T ss_dssp EEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-----TEEEEEESSSSS------------CCEEECTTTSS
T ss_pred EEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-----CceEEEeCCCCe------------EEecccCcccc
Confidence 457788877777664321111122234433 578998633 457789999833 333221
Q ss_pred ---cceeEE--ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcc
Q 012060 272 ---GKLTWI--PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 272 ---m~~~~~--~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
.....+ ..+|.|+++... +-+-+|||.+++ ++.... -...... -.++ ...-++.|++- .
T Consensus 492 ~~~~~i~~i~~d~~g~lWigt~~-------~Gl~~~~~~~~~--~~~~~~~~~l~~~~-i~~i----~~d~~g~lWi~-T 556 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWIGTFG-------GGVGIYTPDMQL--VRKFNQYEGFCSNT-INQI----YRSSKGQMWLA-T 556 (781)
T ss_dssp CSCSCEEEEEECTTCCEEEEESS-------SCEEEECTTCCE--EEEECTTTTCSCSC-EEEE----EECTTSCEEEE-E
T ss_pred cccceeEEEEEcCCCCEEEEEcC-------CCEEEEeCCCCe--EEEccCCCCCCCCe-eEEE----EECCCCCEEEE-E
Confidence 111111 257788875421 237789999998 655432 1011111 1111 12236778753 3
Q ss_pred cCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCCeEEEeecc
Q 012060 346 KSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRV 408 (472)
Q Consensus 346 ~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~ 408 (472)
..|-+...| .+++++....... .+.... ...-+.--+|.||++....|-.|++.
T Consensus 557 ~~Glv~~~d---~~~~~~~~~~~~~-gl~~~~-----i~~i~~d~~g~lW~~t~~Gl~~~~~~ 610 (781)
T 3v9f_A 557 GEGLVCFPS---ARNFDYQVFQRKE-GLPNTH-----IRAISEDKNGNIWASTNTGISCYITS 610 (781)
T ss_dssp TTEEEEESC---TTTCCCEEECGGG-TCSCCC-----CCEEEECSSSCEEEECSSCEEEEETT
T ss_pred CCCceEEEC---CCCCcEEEccccC-CCCCce-----EEEEEECCCCCEEEEcCCceEEEECC
Confidence 333201111 1255666665311 111111 22222233689999988888888764
No 275
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=26.34 E-value=5.5e+02 Score=26.39 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=44.8
Q ss_pred EEEeCCeEEE---EecCCCCCceeEEEeCCCcccccccccccCCCcccc-cc--cce-eEE-ecCCeEEEEEEeCCCc--
Q 012060 224 IADSPTTVFS---SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNM-AV--GKL-TWI-PATGVVLGSAIAWGAF-- 293 (472)
Q Consensus 224 va~l~g~IYA---Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-~~--m~~-~~~-~~~g~Lyv~Gg~~g~~-- 293 (472)
+..+.+-||+ |..++..-..+-.+|++|.+++ ++ |..- .+ ... -|+ +-++.+|++- ++.+.
T Consensus 143 ~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~---~~-----~~~~~~~~~~~Yd~~~~p~~~~mvsS~-wg~p~~~ 213 (462)
T 2ece_A 143 VHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL---GK-----WEIDRGDQYLAYDFWWNLPNEVLVSSE-WAVPNTI 213 (462)
T ss_dssp EEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE---EE-----CCSBCTTCCCCCCEEEETTTTEEEECB-CCCHHHH
T ss_pred eeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE---EE-----EccCCCCccccceEEECCCCCEEEEcc-CcCcccc
Confidence 3344433888 3333334578999999997743 33 5422 11 111 233 3455555542 11100
Q ss_pred -----------cccceEEEEcCCCCeeeeEEcC
Q 012060 294 -----------GYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 294 -----------~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.+.+.|-.||..+++++=+...
T Consensus 214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred ccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 1346999999999876655443
No 276
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=25.61 E-value=6.1e+02 Score=26.70 Aligned_cols=183 Identities=11% Similarity=0.032 Sum_probs=95.8
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCC--CcCcccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD--PRIYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~--m~~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
-++.||..-- .+ +.+.++++.......+.. +..+. ++|+ .++.||..- ...+.|+++|+...
T Consensus 47 ~~~~lywtD~--~~-----~~I~r~~~~g~~~~~v~~~g~~~P~----GlAvD~~~~~LY~tD---~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 47 TDNRIYWTDI--SL-----KTISRAFMNGSALEHVVEFGLDYPE----GMAVDWLGKNLYWAD---TGTNRIEVSKLDGQ 112 (628)
T ss_dssp TTTEEEEEET--TT-----TEEEEEETTSCSCEEEECSSCSCCC----EEEEETTTTEEEEEE---TTTTEEEEEETTST
T ss_pred CCCEEEEEEC--CC-----CeEEEEECCCCCcEEEEeCCCCCcc----eEEEEeCCCEEEEEE---CCCCEEEEEecCCC
Confidence 3688998754 22 244556655443333222 22222 3666 578899931 12468999999762
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
.. ..+.. -..-.|..+..-+.+|.||.+-- | ....|++.++.... -+..... ...+. | ++
T Consensus 113 ~~-~~l~~-----~~l~~P~~iavdp~~G~lY~tD~--g---~~~~I~r~~~dG~~--~~~l~~~-~~~P~-G-----la 172 (628)
T 4a0p_A 113 HR-QVLVW-----KDLDSPRALALDPAEGFMYWTEW--G---GKPKIDRAAMDGSE--RTTLVPN-VGRAN-G-----LT 172 (628)
T ss_dssp TC-EEEEC-----SSCCCEEEEEEETTTTEEEEEEC--S---SSCEEEEEETTSCS--CEEEECS-CSSEE-E-----EE
T ss_pred cE-EEEEe-----CCCCCcccEEEccCCCeEEEeCC--C---CCCEEEEEeCCCCc--eEEEECC-CCCcc-e-----EE
Confidence 20 00000 00111333333346899999732 2 13589999887664 2222221 12222 2 23
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeec
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSR 407 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~ 407 (472)
+...+++||.+=...+.....|+.. .+. ..+.. .-. .-.+|++.++.||++- .+.|++.+.
T Consensus 173 lD~~~~~LY~aD~~~~~I~~~d~dG--~~~-~v~~~------~l~-----~P~glav~~~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 173 IDYAKRRLYWTDLDTNLIESSNMLG--LNR-EVIAD------DLP-----HPFGLTQYQDYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTS--CSC-EEEEE------CCS-----CEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EccccCEEEEEECCCCEEEEEcCCC--Cce-EEeec------cCC-----CceEEEEECCEEEEecCCCCEEEEEEC
Confidence 4666899998876554333222221 222 22332 111 2458889999999984 577777764
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=24.23 E-value=4.1e+02 Score=26.43 Aligned_cols=135 Identities=10% Similarity=0.065 Sum_probs=70.1
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCC-CcCcccceeEEEEe-CCeEEEEecCCCC-CceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD-PRIYRATVTAIADS-PTTVFSSLVCPHK-ENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~-m~~~R~~~~ava~l-~g~IYAGg~~~~~-l~sVE~YDp~t~~~~ 255 (472)
+.||++=. . +.+.++|+.+.+...+.. +..+. ++++. ++.||+.-..... ...+-.+++....
T Consensus 153 g~Lyv~D~---~-----~~I~~id~~~g~v~~~~~~~~~P~----giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~-- 218 (433)
T 4hw6_A 153 DDLYWVGQ---R-----DAFRHVDFVNQYVDIKTTNIGQCA----DVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF-- 218 (433)
T ss_dssp CEEEEECB---T-----SCEEEEETTTTEEEEECCCCSCEE----EEEECTTCCEEEEECCSCTTSEEEEEECGGGTT--
T ss_pred CEEEEEeC---C-----CCEEEEECCCCEEEEeecCCCCcc----EEEECCCCCEEEEcCCCCcccceEEEEECCCCe--
Confidence 78998743 1 577888998777766543 22222 35543 4569983221111 2346666664311
Q ss_pred cccccccCCCcccccccc----eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccce
Q 012060 256 SEIGRQSGASSKNMAVGK----LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADV 331 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~----~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~ 331 (472)
. .....+... ....+.+|.||++-. ..+.|.+|||.+++++........ .....+ +
T Consensus 219 -----~---~~~~~~~~~~P~giavd~~~G~lyv~d~------~~~~V~~~d~~~g~~~~~~~~~~~-~~~~~~-----i 278 (433)
T 4hw6_A 219 -----T---ERLSLCNARGAKTCAVHPQNGKIYYTRY------HHAMISSYDPATGTLTEEEVMMDT-KGSNFH-----I 278 (433)
T ss_dssp -----C---CEEEEEECSSBCCCEECTTTCCEEECBT------TCSEEEEECTTTCCEEEEEEECSC-CSSCEE-----E
T ss_pred -----e---ccccccccCCCCEEEEeCCCCeEEEEEC------CCCEEEEEECCCCeEEEEEeccCC-CCCccc-----E
Confidence 0 001111111 122224789998622 235799999998875444433321 111112 3
Q ss_pred eeeecCCeEEEEcccC
Q 012060 332 DVDVDELTLFKICSKS 347 (472)
Q Consensus 332 ~v~~~~~~iy~vGg~~ 347 (472)
++...++.||+.--..
T Consensus 279 a~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 279 VWHPTGDWAYIIYNGK 294 (433)
T ss_dssp EECTTSSEEEEEETTT
T ss_pred EEeCCCCEEEEEeCCC
Confidence 3455566789876433
No 278
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=23.92 E-value=1e+02 Score=28.98 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=62.1
Q ss_pred CCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC-eeeeEEcCCCCCCCCcccccccceeeeecCCeEEE
Q 012060 264 ASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG-EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFK 342 (472)
Q Consensus 264 ~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~-~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~ 342 (472)
.+|..+. .+...+ +|.||++ .+| .+...||.++ ...|--.+..-. ......|-.+.. ..++.||+
T Consensus 38 ~gw~~~~--~laf~P-~G~LYaV--~~G------~Ly~~~~~t~~~~~W~~s~t~IG--~~Gw~~F~a~~f-D~~G~LYa 103 (236)
T 1tl2_A 38 GGWSNFK--FLFLSP-GGELYGV--LND------KIYKGTPPTHDNDNWMGRAKKIG--NGGWNQFQFLFF-DPNGYLYA 103 (236)
T ss_dssp SSCTTCS--EEEECT-TSCEEEE--ETT------EEEEESCCCSTTCCHHHHCEEEE--CSCGGGCSEEEE-CTTSCEEE
T ss_pred cccccce--eEEECC-CccEEEE--eCC------eEEEECCCCCCcccccccccEec--ccccccceEEEE-CCCCCEEE
Confidence 4577554 234445 8999998 333 5777888653 312322222000 001222222223 35999999
Q ss_pred EcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCCeEEEeecc
Q 012060 343 ICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRV 408 (472)
Q Consensus 343 vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~ 408 (472)
+ .+|.+...+=-+-+.+.|..-+. .... .|-.....-...-+|-||++.+|.+-=+.+|
T Consensus 104 v--~dG~iyr~~pP~~~~~~Wl~~a~----~vg~-~gw~~~~~lff~p~G~Lyav~dg~lyr~~~P 162 (236)
T 1tl2_A 104 V--SKDKLYKASPPQSDTDNWIARAT----EVGS-GGWSGFKFLFFHPNGYLYAVHGQQFYKALPP 162 (236)
T ss_dssp E--ETTEEEEESCCCSTTCCHHHHSE----EEEC-SSGGGEEEEEECTTSCEEEEETTEEEEECCC
T ss_pred e--CCCEEEEeCCCcCCCCceecccc----Eecc-CCCCceEEEEECCCceEEEEeCCcEEecCCC
Confidence 9 55655432211223777844332 1111 1211233333466789999997775434444
No 279
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=23.55 E-value=3.6e+02 Score=23.33 Aligned_cols=128 Identities=5% Similarity=-0.150 Sum_probs=60.4
Q ss_pred ceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCC-cccccccccccCCCccccccc
Q 012060 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKST-LQISSEIGRQSGASSKNMAVG 272 (472)
Q Consensus 196 ~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t-~~~~~~~~~~~~~~W~~v~~m 272 (472)
.++..||+.+.+...+.... ..+.+++.. ++..+| +. ...|-.||..+ .++...+.. -......
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~-----~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~ 88 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTP---ELFEAPNWSPDGKYLLLNS-----EGLLYRLSLAGDPSPEKVDTG-----FATICNN 88 (297)
T ss_dssp EEEEEEETTTTEEEEEEEES---SCCEEEEECTTSSEEEEEE-----TTEEEEEESSSCCSCEECCCT-----TCCCBCS
T ss_pred eeEEEEeCCCCceeeeccCC---cceEeeEECCCCCEEEEEc-----CCeEEEEeCCCCCCceEeccc-----ccccccc
Confidence 45667777766654332211 122234443 445444 43 23788999988 553222111 1111112
Q ss_pred ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 273 KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 273 ~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
...|.+ ++..++.+..... ....|..||..+++ -...... .. ...++....+..|+..+..++.
T Consensus 89 ~~~~sp-dg~~l~~~~~~~~--~~~~l~~~~~~~~~--~~~~~~~---~~-----~~~~~~spdg~~l~~~~~~~~~ 152 (297)
T 2ojh_A 89 DHGISP-DGALYAISDKVEF--GKSAIYLLPSTGGT--PRLMTKN---LP-----SYWHGWSPDGKSFTYCGIRDQV 152 (297)
T ss_dssp CCEECT-TSSEEEEEECTTT--SSCEEEEEETTCCC--CEECCSS---SS-----EEEEEECTTSSEEEEEEEETTE
T ss_pred ceEECC-CCCEEEEEEeCCC--CcceEEEEECCCCc--eEEeecC---CC-----ccceEECCCCCEEEEEECCCCc
Confidence 344544 4444454442221 13468888887776 3333331 11 1112234456667767766653
No 280
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=22.56 E-value=4.5e+02 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=17.8
Q ss_pred eEEEEECCEEEEe--cCCeEEEeecc
Q 012060 385 KLIHCYKNQVFVG--RGGSLEVWSRV 408 (472)
Q Consensus 385 ~~~~~~~g~l~~~--~g~~~~v~~~~ 408 (472)
..++..+|+||++ .++.|.++...
T Consensus 287 ~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 287 EQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred eEEEEeCCEEEEeecCCCceEEEecc
Confidence 3455679999999 67888888653
No 281
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=22.07 E-value=3.1e+02 Score=27.72 Aligned_cols=90 Identities=11% Similarity=-0.021 Sum_probs=45.0
Q ss_pred eecCCCCccccCCCCcCcccceeEEEEeCCe-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc-----cc
Q 012060 200 SRHVASAHWTDPSDPRIYRATVTAIADSPTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-----GK 273 (472)
Q Consensus 200 ~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-----m~ 273 (472)
.||..+.+-..+..... ..+ .-.-||. |+.+..+.+....+-.+|..+.+ +..+.. ..
T Consensus 136 l~d~~~g~~~~l~~~~~--~~~--~~spDG~~la~~~~~~~~~~~i~~~d~~~g~------------~~~l~~~~~~~~~ 199 (582)
T 3o4h_A 136 LYALDGGGLRELARLPG--FGF--VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG------------LRVFDSGEGSFSS 199 (582)
T ss_dssp EEEEETTEEEEEEEESS--CEE--EEEEETTEEEEEEEEETTEEEEEEEETTTCC------------CEEECCSSCEEEE
T ss_pred EEEccCCcEEEeecCCC--ceE--EECCCCCEEEEEEEcCCCCeEEEEEcCCCCC------------ceEeecCCCcccc
Confidence 55666555444432211 222 2234554 55433332223468899988843 222211 22
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeee
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVV 310 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~v 310 (472)
..|.+ +|..++.+..++. ..|..||+.+++..
T Consensus 200 ~~~Sp-DG~~l~~~~~~~~----~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 200 ASISP-GMKVTAGLETARE----ARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECT-TSCEEEEEECSSC----EEEEEECTTTCCEE
T ss_pred ceECC-CCCEEEEccCCCe----eEEEEEcCCCCcEE
Confidence 33444 5554444443332 37999999999833
No 282
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=21.95 E-value=4.2e+02 Score=23.52 Aligned_cols=188 Identities=8% Similarity=-0.029 Sum_probs=92.9
Q ss_pred EEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 223 AIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 223 ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+++.. ++.||+.-. ..+.|.+||+.+.+...-+.. . ...|..+...+.++.||++-. ..+.|.
T Consensus 40 gi~~d~~~~~ly~~d~---~~~~I~~~~~~g~~~~~~~~~----~--~~~p~~ia~d~~~~~lyv~d~------~~~~I~ 104 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQ----D--LGSPEGIALDHLGRTIFWTDS------QLDRIE 104 (267)
T ss_dssp EEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECT----T--CCCEEEEEEETTTTEEEEEET------TTTEEE
T ss_pred EEEEecCCCEEEEEEC---CCCEEEEEecCCCCcEEEEEC----C--CCCccEEEEEecCCeEEEEEC------CCCEEE
Confidence 36664 468998421 145799999987331110000 0 011222222235789999743 235799
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc--CCCcccccccccCCCCcEEeecCCCCcccCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK--SGDIAMADLRNLGEDPWVYMEDKNPSMISSSG 378 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~--~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~ 378 (472)
.+|+.... -+...+.....++ ++++...++.||+.... .+.....++ ....-..+... .+.
T Consensus 105 ~~~~~g~~--~~~~~~~~~~~P~------~i~vd~~~g~lyv~~~~~~~~~I~~~~~---dg~~~~~~~~~--~~~---- 167 (267)
T 1npe_A 105 VAKMDGTQ--RRVLFDTGLVNPR------GIVTDPVRGNLYWTDWNRDNPKIETSHM---DGTNRRILAQD--NLG---- 167 (267)
T ss_dssp EEETTSCS--CEEEECSSCSSEE------EEEEETTTTEEEEEECCSSSCEEEEEET---TSCCCEEEECT--TCS----
T ss_pred EEEcCCCC--EEEEEECCCCCcc------EEEEeeCCCEEEEEECCCCCcEEEEEec---CCCCcEEEEEC--CCC----
Confidence 99987653 1122121112222 33345558999987643 122111111 11111122210 011
Q ss_pred CCCCcCeEEEEE--CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeecc
Q 012060 379 NNNGENKLIHCY--KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDV 454 (472)
Q Consensus 379 ~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~ 454 (472)
.-.++++- +++||++-. +.|.+++.... .++-++.. .+.-..|+.-+++|||+-...
T Consensus 168 ----~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~----------~~~~~~~~-----~~~P~gi~~d~~~lyva~~~~ 228 (267)
T 1npe_A 168 ----LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP----------GRRKVLEG-----LQYPFAVTSYGKNLYYTDWKT 228 (267)
T ss_dssp ----CEEEEEEETTTTEEEEEETTTTEEEEEETTEE----------EEEEEEEC-----CCSEEEEEEETTEEEEEETTT
T ss_pred ----CCcEEEEcCCCCEEEEEECCCCEEEEEecCCC----------ceEEEecC-----CCCceEEEEeCCEEEEEECCC
Confidence 23456654 579999843 67888876321 12222221 222345566678899887776
Q ss_pred ceeEEee
Q 012060 455 EGIEVWE 461 (472)
Q Consensus 455 ~~~~vw~ 461 (472)
..|.+.+
T Consensus 229 ~~v~~~d 235 (267)
T 1npe_A 229 NSVIAMD 235 (267)
T ss_dssp TEEEEEE
T ss_pred CeEEEEe
Confidence 6666665
Done!