BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012061
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/482 (28%), Positives = 216/482 (44%), Gaps = 38/482 (7%)
Query: 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTA 70
PHVA+IPS GMGHL P + A LV H ++ Q L + P +
Sbjct: 7 PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRT--VLDSLPSSIS 64
Query: 71 KRFHLLPFDPNSANATDPF-------LLRWEAIRRXXXXXXXXXXXXXXXXITDVTLISA 123
F L P D +++ + R R + D+ A
Sbjct: 65 SVF-LPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDA 123
Query: 124 VLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVEFDD--DFIEIPGLPPI 181
V + H+P Y+ + +A + S P K + S EF + + + +PG P+
Sbjct: 124 -FDVAVEFHVPPYIFYPTTANVLSFFLHLP-----KLDETVSCEFRELTEPLMLPGCVPV 177
Query: 182 PLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGL-- 239
D K L N + ++ G+L+N+F LE + + AL GL
Sbjct: 178 AGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE----PGLDK 233
Query: 240 PPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGL 299
PPVY VGPL+ ++ S LKWLD+QP GSV+YVSFGS L+ EQ EL GL
Sbjct: 234 PPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGL 293
Query: 300 LSSGCRFLWVVKGKN-------VDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVL 352
S RFLWV++ + D + L +E+ K +G V+ W Q +VL
Sbjct: 294 ADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVL 353
Query: 353 SHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAV-ERAGLGMWVRSWGWGT 411
+H + GGF++H GWNS +E+ G+PL+ WP + +QK+NA + E + R+ G
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRA---GD 410
Query: 412 ELRAKGDEIGLKIKDLMAND---FLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCN 468
+ + +E+ +K LM + +R + K ++E A + + G+S + + KWK +
Sbjct: 411 DGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAH 470
Query: 469 NN 470
Sbjct: 471 KK 472
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 140/488 (28%), Positives = 235/488 (48%), Gaps = 44/488 (9%)
Query: 1 MSDSGGFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT---TYPTVSLAETQH 57
MSD + + + IP+ G+GHL L A L H + + +P + A++ +
Sbjct: 3 MSD---INKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADS-Y 58
Query: 58 VSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLLRW---EAIRRXXXXXXXXXXXXXXXX 114
+ L++ PQ+ + P + F + I
Sbjct: 59 IKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGL 118
Query: 115 ITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVEFDD---- 170
+ D +S ++ V +P+Y+ T++ SL S K+ V FDD
Sbjct: 119 VLDFFCVS-MIDVGNEFGIPSYLFLTSNVGFLSLMLSL------KNRQIEEV-FDDSDRD 170
Query: 171 -DFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVA 229
+ IPG+ S+V P +K ++ + F + G+++N+F LE ++ A
Sbjct: 171 HQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDA 230
Query: 230 LNGRRVVAGLPPVYAVGPLLPCEFE---KRDDPSTSLILKWLDDQPEGSVVYVSFGSR-L 285
L +PP+YAVGPLL + + K D LILKWLD+QP+ SVV++ FGS +
Sbjct: 231 LYDHD--EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV 288
Query: 286 ALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGL-VVKN 344
+ Q +E+ GL SG RFLW + K V +E ++ +G ++
Sbjct: 289 SFGPSQIREIALGLKHSGVRFLW----------SNSAEKKVFPEGFLEWMELEGKGMICG 338
Query: 345 WVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINA-EAVERAGLGMW 403
W Q +VL+H+A+GGFVSH GWNS++E+ GVP+L WP + +Q++NA V+ G+G+
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLG 398
Query: 404 VR-SWGWGTELRAKGDEIGLKIKDLMAND-FLREQAKRIEEEARKAIGVGGSSERTFKEL 461
+R + G+++ A +EI +KDLM D + ++ + ++E +R A+ GGSS + +L
Sbjct: 399 LRVDYRKGSDVVA-AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
Query: 462 IDKWKCNN 469
ID +N
Sbjct: 458 IDDITGSN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 139/482 (28%), Positives = 233/482 (48%), Gaps = 44/482 (9%)
Query: 1 MSDSGGFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT---TYPTVSLAETQH 57
MSD + + + IP+ G+GHL L A L H + + +P + A++ +
Sbjct: 3 MSD---INKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADS-Y 58
Query: 58 VSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLLRW---EAIRRXXXXXXXXXXXXXXXX 114
+ L++ PQ+ + P + F + I
Sbjct: 59 IKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGL 118
Query: 115 ITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVEFDD---- 170
+ D +S ++ V +P+Y+ T++ SL S K+ V FDD
Sbjct: 119 VLDFFCVS-MIDVGNEFGIPSYLFLTSNVGFLSLMLSL------KNRQIEEV-FDDSDRD 170
Query: 171 -DFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVA 229
+ IPG+ S+V P +K ++ + F + G+++N+F LE ++ A
Sbjct: 171 HQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDA 230
Query: 230 LNGRRVVAGLPPVYAVGPLLPCEFE---KRDDPSTSLILKWLDDQPEGSVVYVSFGSR-L 285
L +PP+YAVGPLL + + K D LILKWLD+QP+ SVV++ FGS +
Sbjct: 231 LYDHD--EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV 288
Query: 286 ALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGL-VVKN 344
+ Q +E+ GL SG RFLW + K V +E ++ +G ++
Sbjct: 289 SFGPSQIREIALGLKHSGVRFLW----------SNSAEKKVFPEGFLEWMELEGKGMICG 338
Query: 345 WVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINA-EAVERAGLGMW 403
W Q +VL+H+A+GGFVSH GWNS++E+ GVP+L WP + +Q++NA V+ G+G+
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLG 398
Query: 404 VR-SWGWGTELRAKGDEIGLKIKDLMAND-FLREQAKRIEEEARKAIGVGGSSERTFKEL 461
+R + G+++ A +EI +KDLM D + ++ + ++E +R A+ GGSS + +L
Sbjct: 399 LRVDYRKGSDVVA-AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
Query: 462 ID 463
ID
Sbjct: 458 ID 459
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 130/506 (25%), Positives = 214/506 (42%), Gaps = 81/506 (16%)
Query: 5 GGF-DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLS 63
G F + PHV +IP GH+ P +LA L +T + T E H S
Sbjct: 2 GNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNT-------EYNHKRLLKS 54
Query: 64 AYPQV----TAKRFH-----LLPFDPNSANATD-PFLLRWEAIRRXXXXXXXXXXXXXXX 113
P+ T F L P + + + D P L +
Sbjct: 55 RGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHST 114
Query: 114 XITDVTLI--SAVLPVTIN----LHLPNYVLFTASAKMFSLTASFPAIVA--------SK 159
+ VT + + TI LPN + F++SA F + V
Sbjct: 115 NVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDES 174
Query: 160 STSSGSVEFDDDFIEIPGLPPIPLSSVPPAV--MDSKSLFATSFLENGNSFVKSNGVLIN 217
++G +E D+I PGL L + + + + F+E + K +L+N
Sbjct: 175 YLTNGCLETKVDWI--PGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLN 232
Query: 218 SFDALEADTLVALNGRRVVAGLPPVYAVGPLLPC-----EFEKRDDPSTSL------ILK 266
+F+ LE+D + AL+ + +P +Y +GPL + + D ++L L
Sbjct: 233 TFNELESDVINALS-----STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLD 287
Query: 267 WLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVK-----GKNVDKEDEE 321
WL+ + GSVVYV+FGS ++ EQ E GL + FLW+++ G +V
Sbjct: 288 WLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV------ 341
Query: 322 SLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLV 381
+ E +I D+GL+ +W QDKVL+H ++GGF++H GWNS E+ GVP+L
Sbjct: 342 ----IFSSEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLC 396
Query: 382 WPHFGDQKINAEAVERAGLGMWVRSWGWGTEL--RAKGDEIGLKIKDLMAND---FLREQ 436
WP F DQ + + W G E+ K +E+ I +++A D ++++
Sbjct: 397 WPFFADQPTDCRFI--------CNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQK 448
Query: 437 AKRIEEEARKAIGVGGSSERTFKELI 462
A ++++A + GG S ++I
Sbjct: 449 AMELKKKAEENTRPGGCSYMNLNKVI 474
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 136/292 (46%), Gaps = 22/292 (7%)
Query: 175 IPGLPPIPLSSVPPAVM--DSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNG 232
IPG+ + + ++ + SLF+ G K+ V INSF+ L+ L
Sbjct: 176 IPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKS 235
Query: 233 R-RVVAGLPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQ 291
+ + + P + P P+T+ L+WL ++ SVVY+SFG+ +
Sbjct: 236 KLKTYLNIGPFNLITP-------PPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAE 288
Query: 292 TKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKV 351
L + L +S F+W ++ K + L +EK + G+VV W Q +V
Sbjct: 289 VVALSEALEASRVPFIWSLRDKA---------RVHLPEGFLEKTRGYGMVVP-WAPQAEV 338
Query: 352 LSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGT 411
L+H AVG FV+H GWNSL E+ GVPL+ P FGDQ++N VE L + VR G G
Sbjct: 339 LAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDV-LEIGVRIEG-GV 396
Query: 412 ELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463
++ +I LRE + + E A +A+G GSS F L+D
Sbjct: 397 FTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVD 448
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 136/294 (46%), Gaps = 27/294 (9%)
Query: 175 IPGLPPIPLSSVPPAVM-DSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGR 233
+PG P + S +P V+ D FAT + G ++N V INSF + LN +
Sbjct: 179 LPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSK 238
Query: 234 -RVVAGLPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQT 292
+++ + P P +R L+WLD SVVY+SFGS + +
Sbjct: 239 FKLLLNVGPFNLTTP-------QRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHEL 291
Query: 293 KELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVL 352
L + L G F+W +G +K L +E+ K +G +V W Q ++L
Sbjct: 292 TALAESLEECGFPFIWSFRGDPKEK---------LPKGFLERTKTKGKIVA-WAPQVEIL 341
Query: 353 SHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKIN---AEAVERAGLGMWVRSWGW 409
H +VG F++H GWNS++E GVP++ P FGDQ +N E+V G+G V +
Sbjct: 342 KHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG--VDNGVL 399
Query: 410 GTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463
E K E+ + + +R++ +++E A KA+ G+S F LI
Sbjct: 400 TKESIKKALELTMSSEK---GGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 273 EGSVVYVSFGSRLA-LSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHEL 331
E VV S GS ++ + E+ + L + LW G +K D L L
Sbjct: 20 ENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDG---NKPDTLGLNTRL---- 72
Query: 332 MEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKIN 391
W+ Q+ +L H F++HGG N + EA HG+P + P F DQ N
Sbjct: 73 -----------YKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
Query: 392 AEAVERAGLGMWV 404
+ G + V
Sbjct: 122 IAHXKARGAAVRV 134
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 342 VKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLG 401
V WV Q +L+ + F++H G S +EA + VP++ P +Q +NAE + GLG
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLG 366
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 360 FVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDE 419
+ HGG +L+ A GVP V PH Q N + + G+G + G E
Sbjct: 308 IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAE------- 360
Query: 420 IGLKIKDLMANDFLREQAKRIEEE 443
+ + L+ + LRE A R+ +E
Sbjct: 361 ---QCRRLLDDAGLREAALRVRQE 381
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 360 FVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDE 419
+ HGG +L+ A GVP V PH Q N + + G+G + G E
Sbjct: 308 IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAE------- 360
Query: 420 IGLKIKDLMANDFLREQAKRIEEE 443
+ + L+ + LRE A R+ +E
Sbjct: 361 ---QCRRLLDDAGLREAALRVRQE 381
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 344 NWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLG 401
WV KVL V V+HGG +L EA G PL+V P D + A V++ GLG
Sbjct: 303 RWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 344 NWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLG 401
WV KVL V V+HGG +L EA G PL+V P D + A V++ GLG
Sbjct: 303 RWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 344 NWVDQDKVLSH-RAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKI-NAEAVERAGLG 401
W+ VL+H RA ++HG +++EA GVPL++ PHF + +AE V GLG
Sbjct: 287 QWIPFHSVLAHARAC---LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343
Query: 402 MWVR 405
+R
Sbjct: 344 SVLR 347
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 355 RAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGD--QKINAEAVERAGLGMWVRSWGWGTE 412
R V HGG +++ A G+P L+ P D Q EAV R G+G+ S +
Sbjct: 298 RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 413 LRAKGDEIGLKIKDLMANDFLREQAKRIEEE 443
L ++ L+ ++ LR A+ + EE
Sbjct: 358 L----------LRRLIGDESLRTAAREVREE 378
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 355 RAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGD--QKINAEAVERAGLGMWVRSWGWGTE 412
R V HGG ++ A G+P L+ P D Q EAV R G+G+ S +
Sbjct: 298 RTCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 413 LRAKGDEIGLKIKDLMANDFLREQAKRIEEE 443
L ++ L+ ++ LR A+ + EE
Sbjct: 358 L----------LRRLIGDESLRTAAREVREE 378
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 357 VGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGM 402
V + HGG + AAR G P ++ P DQ A V G+G+
Sbjct: 302 VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV 347
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 33/199 (16%)
Query: 262 SLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEE 321
S++ +WL D+PE V ++ G + +G + + V + + D +
Sbjct: 255 SVVPEWLHDEPERRRVCLTLGIS-----SRENSIGQVSIEELLGAVGDVDAEIIATFDAQ 309
Query: 322 SLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLV 381
L+ V + + ++ G V + +L V HGG S AA HGVP ++
Sbjct: 310 QLEGVA--NIPDNVRTVGFVPMH-----ALLP--TCAATVHHGGPGSWHTAAIHGVPQVI 360
Query: 382 WPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIE 441
P D + A+ + G G I L + +L D LRE KR+
Sbjct: 361 LPDGWDTGVRAQRTQEFGAG------------------IALPVPELTP-DQLRESVKRVL 401
Query: 442 EEARKAIGVGGSSERTFKE 460
++ G + E
Sbjct: 402 DDPAHRAGAARMRDDMLAE 420
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1
Resolution
Length = 228
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 68 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVXG 121
Query: 360 FVS 362
V
Sbjct: 122 AVG 124
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 248 LLPCEFEKRDDPSTSLILKWLDDQPEG-SVVYVSFGSRLALSMEQTKELGDGLLSSGCRF 306
L P F ++ D + WL + +VY++ G+ ++E + DGL
Sbjct: 220 LRPVPFAEQGD-----LPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADV 274
Query: 307 LWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGW 366
L V G ++D LG E+ ++ +++WV Q +L H V V HGG
Sbjct: 275 L-VASGPSLDVSG-------LG-EVPANVR-----LESWVPQAALLPH--VDLVVHHGGS 318
Query: 367 NSLVEAARHGVPLLVWPHFGD 387
+ + A GVP L +P GD
Sbjct: 319 GTTLGALGAGVPQLSFPWAGD 339
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 228
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 68 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 121
Query: 360 FVS 362
V
Sbjct: 122 AVG 124
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|C Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 228
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 68 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 121
Query: 360 FVS 362
V
Sbjct: 122 AVG 124
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|4ABS|C Chain C, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 229
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 69 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 122
Query: 360 FVS 362
V
Sbjct: 123 AVG 125
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus
Thermophilus
Length = 228
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 69 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 122
Query: 360 FVS 362
V
Sbjct: 123 AVG 125
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With
Threonine 217 Replaced By Valine
pdb|3U56|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217v Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 69 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 122
Query: 360 FVS 362
V
Sbjct: 123 AVG 125
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With
Substitution Thr217ala
Length = 229
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 69 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 122
Query: 360 FVS 362
V
Sbjct: 123 AVG 125
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|C Chain C, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|A Chain A, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|A Chain A, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3U4M|A Chain A, Crystal Structure Of Ribosomal Protein Tthl1 In Complex
With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 69 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 122
Query: 360 FVS 362
V
Sbjct: 123 AVG 125
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 64 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 117
Query: 360 FVS 362
V
Sbjct: 118 AVG 120
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2V47|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2OM7|K Chain K, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WDI|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|2X9S|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|2XQE|C Chain C, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|C Chain C, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|C Chain C, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|C Chain C, Ef-Tu Complex 3
pdb|2Y19|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 229
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 69 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 122
Query: 360 FVS 362
V
Sbjct: 123 AVG 125
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|C Chain C, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|E Chain E, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|G Chain G, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
Length = 228
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W D D V++ V G
Sbjct: 68 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWXDFDAVVATPDVXG 121
Query: 360 FVS 362
V
Sbjct: 122 AVG 124
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By
Cysteine
Length = 228
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 68 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD------GWMDFDAVVATPDVMG 121
Query: 360 FVS 362
V
Sbjct: 122 AVG 124
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 300 LSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGG 359
L R L + KG+ + + +E V G E+++KI D W+D D V++ V G
Sbjct: 69 LGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDA------WMDFDAVVATPDVMG 122
Query: 360 FV 361
V
Sbjct: 123 AV 124
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 33/133 (24%)
Query: 277 VYVSFGSRLA------LSMEQTKELGDGL-LSSGCRFLWVVKGKNVDKEDEESLKNVLGH 329
VYV FGS A +++E + G + LSSG W G+ +D+ D+ + + H
Sbjct: 224 VYVGFGSGPAPAEAARVAIEAVRAQGRRVVLSSG----WAGLGR-IDEGDDCLVVGEVNH 278
Query: 330 ELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQK 389
+ VL R V V HGG + R G P +V P DQ
Sbjct: 279 Q--------------------VLFGR-VAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQP 317
Query: 390 INAEAVERAGLGM 402
A V G+G+
Sbjct: 318 YYAGRVADLGVGV 330
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 18/89 (20%)
Query: 332 MEKIKDQG---LVVKNWV------DQDKVLS---------HRAVGGFVSHGGWNSLVEAA 373
+E I+ QG ++ + W D+D + R V + HG + A
Sbjct: 260 VEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVAT 319
Query: 374 RHGVPLLVWPHFGDQKINAEAVERAGLGM 402
R GVP LV P DQ A V G+G+
Sbjct: 320 RAGVPQLVIPRNTDQPYFAGRVAALGIGV 348
>pdb|2L7B|A Chain A, Nmr Structure Of Full Length Apoe3
Length = 307
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 398 AGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQA----KRIEEEARK 446
AG + R+ WG LRA+ +E+G + +D + D ++EQ ++EE+A++
Sbjct: 207 AGQPLQERAQAWGERLRARMEEMGSRTRDRL--DEVKEQVAEVRAKLEEQAQQ 257
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 342 VKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLG 401
V +WV Q +L R FV+H G E P++ P DQ NA+ ++ GLG
Sbjct: 287 VHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ--GLG 342
Query: 402 M 402
+
Sbjct: 343 V 343
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 358 GGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKIN--AEAVERAGLGMWVRSWGWGTELRA 415
G FV+ GG N L+E G+P++ P+ K+N E +E+ G G V++ TEL
Sbjct: 285 GTFVNIGGHN-LLEPTCWGIPVIYGPY--THKVNDLKEFLEKEGAGFEVKN---ETELVT 338
Query: 416 KGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTF 458
K E+ L +K + ++EE++R+ G R F
Sbjct: 339 KLTEL-LSVKKEI----------KVEEKSREIKGCYLEKLREF 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,696,681
Number of Sequences: 62578
Number of extensions: 539989
Number of successful extensions: 1569
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 49
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)