Query 012061
Match_columns 472
No_of_seqs 176 out of 1534
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.7E-68 3.7E-73 521.3 44.0 432 6-467 3-450 (451)
2 PLN02992 coniferyl-alcohol glu 100.0 1.2E-68 2.6E-73 522.5 42.4 437 10-467 5-469 (481)
3 PLN00164 glucosyltransferase; 100.0 9.2E-68 2E-72 521.6 44.9 449 10-469 3-475 (480)
4 PLN02207 UDP-glycosyltransfera 100.0 1.3E-67 2.8E-72 514.3 43.7 441 10-469 3-467 (468)
5 PLN03015 UDP-glucosyl transfer 100.0 1.9E-67 4.1E-72 510.9 41.6 444 10-466 3-467 (470)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 8.4E-67 1.8E-71 512.9 43.0 442 7-468 6-472 (477)
7 PLN03004 UDP-glycosyltransfera 100.0 3.1E-67 6.7E-72 510.1 38.9 431 11-456 4-450 (451)
8 PLN02554 UDP-glycosyltransfera 100.0 8.1E-67 1.8E-71 517.1 42.6 442 10-469 2-480 (481)
9 PLN02562 UDP-glycosyltransfera 100.0 1.3E-66 2.9E-71 509.7 43.6 430 8-466 4-448 (448)
10 PLN02555 limonoid glucosyltran 100.0 1.8E-66 4E-71 508.6 44.5 448 5-469 2-471 (480)
11 PLN02173 UDP-glucosyl transfer 100.0 1.5E-66 3.2E-71 505.1 41.9 416 9-466 4-447 (449)
12 PLN02210 UDP-glucosyl transfer 100.0 6.9E-66 1.5E-70 505.1 43.9 425 8-466 6-454 (456)
13 PLN02534 UDP-glycosyltransfera 100.0 1E-65 2.2E-70 504.0 43.1 447 5-470 3-489 (491)
14 PLN02167 UDP-glycosyltransfera 100.0 1.2E-65 2.7E-70 507.8 42.9 446 9-468 2-473 (475)
15 PLN02208 glycosyltransferase f 100.0 8.7E-66 1.9E-70 501.0 39.7 415 9-468 3-440 (442)
16 PLN03007 UDP-glucosyltransfera 100.0 3.1E-65 6.8E-70 506.5 44.1 442 9-468 4-481 (482)
17 PLN02670 transferase, transfer 100.0 1.3E-65 2.8E-70 500.8 40.4 439 7-470 3-468 (472)
18 PLN02764 glycosyltransferase f 100.0 2.5E-64 5.3E-69 487.8 40.1 418 10-469 5-447 (453)
19 PLN02448 UDP-glycosyltransfera 100.0 5.1E-64 1.1E-68 495.5 42.8 430 6-467 6-457 (459)
20 PLN00414 glycosyltransferase f 100.0 2.7E-64 5.9E-69 491.1 40.1 419 8-470 2-443 (446)
21 PLN02152 indole-3-acetate beta 100.0 4.8E-64 1E-68 488.4 40.7 424 11-466 4-455 (455)
22 PHA03392 egt ecdysteroid UDP-g 100.0 9.7E-49 2.1E-53 389.1 33.4 388 12-469 22-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.4E-50 3.1E-55 409.9 7.1 383 12-467 2-443 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1E-42 2.3E-47 341.5 30.8 375 16-463 1-388 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 4.9E-43 1.1E-47 345.6 21.6 366 11-447 1-388 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 2.3E-42 5E-47 350.2 21.1 405 10-446 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 6.4E-40 1.4E-44 317.5 22.9 388 10-467 1-400 (406)
28 PRK12446 undecaprenyldiphospho 100.0 1.4E-27 2.9E-32 228.7 29.4 318 12-437 3-333 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 2.9E-24 6.3E-29 202.9 31.6 340 11-462 1-352 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 6.9E-25 1.5E-29 209.5 22.3 301 11-427 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 2.1E-22 4.5E-27 191.8 22.8 127 274-434 188-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.4E-18 3E-23 168.7 32.1 341 11-466 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.3E-17 2.7E-22 161.7 29.9 323 12-439 1-333 (350)
34 TIGR01133 murG undecaprenyldip 99.8 4.4E-16 9.6E-21 150.8 31.0 89 347-446 243-334 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 8.7E-17 1.9E-21 156.4 21.0 351 11-463 6-384 (385)
36 PRK13609 diacylglycerol glucos 99.7 1.2E-15 2.5E-20 149.5 28.3 169 272-467 200-371 (380)
37 PRK13608 diacylglycerol glucos 99.7 2E-14 4.4E-19 140.7 24.8 170 272-470 200-374 (391)
38 COG4671 Predicted glycosyl tra 99.7 5.9E-14 1.3E-18 126.6 25.4 335 6-431 5-366 (400)
39 PRK00025 lpxB lipid-A-disaccha 99.7 9.3E-15 2E-19 143.2 21.3 352 10-466 1-376 (380)
40 TIGR03590 PseG pseudaminic aci 99.6 2.2E-14 4.7E-19 133.2 20.3 105 275-394 171-278 (279)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 1.6E-16 3.5E-21 136.4 -0.2 138 276-434 1-148 (167)
42 PLN02605 monogalactosyldiacylg 99.6 3.5E-12 7.6E-17 124.7 27.9 174 264-464 196-378 (382)
43 TIGR03492 conserved hypothetic 99.5 1.5E-11 3.2E-16 120.0 25.4 195 241-463 181-394 (396)
44 cd03814 GT1_like_2 This family 99.4 9.7E-10 2.1E-14 106.6 30.6 157 275-464 197-362 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 1.6E-09 3.4E-14 109.0 31.0 136 276-440 264-410 (465)
46 PF03033 Glyco_transf_28: Glyc 99.3 1.4E-12 3E-17 108.4 2.1 116 13-143 1-132 (139)
47 cd03800 GT1_Sucrose_synthase T 99.2 3.9E-08 8.5E-13 96.9 30.9 84 338-435 283-373 (398)
48 cd03794 GT1_wbuB_like This fam 99.2 3.2E-08 6.9E-13 96.7 28.9 145 274-442 219-377 (394)
49 COG3980 spsG Spore coat polysa 99.2 8.1E-09 1.7E-13 91.0 21.1 145 276-443 160-306 (318)
50 cd03823 GT1_ExpE7_like This fa 99.2 1E-07 2.2E-12 92.1 31.7 88 337-438 242-337 (359)
51 cd03818 GT1_ExpC_like This fam 99.2 1.3E-07 2.9E-12 93.2 32.4 86 337-436 280-372 (396)
52 cd03817 GT1_UGDG_like This fam 99.2 1.1E-07 2.3E-12 92.4 31.6 135 275-434 202-347 (374)
53 TIGR00236 wecB UDP-N-acetylglu 99.2 2.4E-08 5.2E-13 97.3 26.1 106 338-463 255-363 (365)
54 PRK10307 putative glycosyl tra 99.1 3.4E-07 7.3E-12 90.8 33.4 115 338-467 284-407 (412)
55 cd03801 GT1_YqgM_like This fam 99.1 1.6E-07 3.5E-12 90.7 30.0 110 337-464 255-372 (374)
56 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 3.4E-08 7.4E-13 96.2 24.2 159 273-459 197-360 (363)
57 cd03808 GT1_cap1E_like This fa 99.1 4.8E-07 1E-11 87.1 30.1 142 274-437 187-336 (359)
58 cd03816 GT1_ALG1_like This fam 99.0 1.5E-06 3.2E-11 86.2 33.0 81 338-434 294-388 (415)
59 cd03825 GT1_wcfI_like This fam 99.0 6.2E-07 1.3E-11 87.2 29.7 112 338-466 244-363 (365)
60 PRK05749 3-deoxy-D-manno-octul 99.0 4E-07 8.8E-12 90.6 28.6 66 364-439 332-397 (425)
61 cd04962 GT1_like_5 This family 99.0 1.3E-06 2.9E-11 85.2 31.8 111 338-465 253-368 (371)
62 cd03805 GT1_ALG2_like This fam 99.0 3.4E-06 7.3E-11 83.0 32.3 83 338-435 280-369 (392)
63 TIGR03449 mycothiol_MshA UDP-N 99.0 3.6E-06 7.9E-11 83.2 32.2 111 338-466 283-400 (405)
64 cd03795 GT1_like_4 This family 98.9 2.9E-06 6.3E-11 82.1 30.6 135 276-436 192-338 (357)
65 cd03798 GT1_wlbH_like This fam 98.9 3.1E-06 6.6E-11 81.9 30.3 83 337-433 258-347 (377)
66 cd03820 GT1_amsD_like This fam 98.9 3.4E-06 7.3E-11 80.8 30.1 92 338-443 235-332 (348)
67 cd03821 GT1_Bme6_like This fam 98.9 4E-06 8.6E-11 81.3 30.9 87 337-439 261-354 (375)
68 cd05844 GT1_like_7 Glycosyltra 98.9 1.5E-06 3.3E-11 84.6 25.8 84 338-435 245-341 (367)
69 PRK09922 UDP-D-galactose:(gluc 98.9 1.1E-06 2.4E-11 85.3 24.5 136 276-432 181-326 (359)
70 cd03802 GT1_AviGT4_like This f 98.8 2.6E-06 5.6E-11 81.8 25.5 128 277-431 173-309 (335)
71 cd03796 GT1_PIG-A_like This fa 98.8 1.2E-05 2.6E-10 79.4 30.5 132 274-431 192-334 (398)
72 cd03799 GT1_amsK_like This is 98.8 1.5E-05 3.1E-10 77.2 30.1 136 275-434 179-331 (355)
73 PF04007 DUF354: Protein of un 98.8 5.8E-06 1.3E-10 77.9 25.8 126 274-428 179-308 (335)
74 cd03822 GT1_ecORF704_like This 98.8 6.8E-06 1.5E-10 79.7 27.5 107 338-463 247-363 (366)
75 cd03819 GT1_WavL_like This fam 98.8 1.6E-05 3.5E-10 76.9 29.8 142 275-435 185-336 (355)
76 cd03811 GT1_WabH_like This fam 98.8 4.1E-06 8.9E-11 80.3 25.0 88 338-439 246-341 (353)
77 TIGR02472 sucr_P_syn_N sucrose 98.8 2.9E-05 6.4E-10 77.5 31.4 85 338-434 317-410 (439)
78 TIGR02149 glgA_Coryne glycogen 98.7 2.3E-05 5E-10 77.0 29.3 113 339-466 261-385 (388)
79 TIGR02468 sucrsPsyn_pln sucros 98.7 0.00018 3.8E-09 76.9 36.1 114 338-467 548-670 (1050)
80 COG1519 KdtA 3-deoxy-D-manno-o 98.7 4.5E-05 9.7E-10 72.3 28.3 319 13-444 51-400 (419)
81 cd04951 GT1_WbdM_like This fam 98.7 4.1E-05 8.9E-10 74.2 29.4 106 338-463 245-356 (360)
82 PRK14089 ipid-A-disaccharide s 98.7 2.4E-06 5.2E-11 81.2 18.4 164 275-461 168-344 (347)
83 cd04955 GT1_like_6 This family 98.7 5.3E-05 1.1E-09 73.5 28.7 109 337-464 247-361 (363)
84 cd03807 GT1_WbnK_like This fam 98.6 0.00013 2.9E-09 70.2 30.4 107 338-463 251-362 (365)
85 TIGR03087 stp1 sugar transfera 98.6 1.3E-05 2.8E-10 79.1 23.0 84 337-436 279-368 (397)
86 TIGR02470 sucr_synth sucrose s 98.6 0.00094 2E-08 69.8 36.3 87 338-436 619-719 (784)
87 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 6.8E-06 1.5E-10 79.6 19.5 157 273-459 200-363 (365)
88 PF02350 Epimerase_2: UDP-N-ac 98.5 2.1E-07 4.6E-12 89.1 8.0 185 241-461 146-345 (346)
89 cd03809 GT1_mtfB_like This fam 98.5 1.9E-05 4.1E-10 76.5 21.8 91 337-443 252-349 (365)
90 PLN02846 digalactosyldiacylgly 98.5 0.00015 3.3E-09 71.5 27.2 74 341-431 287-364 (462)
91 cd03812 GT1_CapH_like This fam 98.5 7.8E-05 1.7E-09 72.2 24.6 142 275-440 192-341 (358)
92 PRK01021 lpxB lipid-A-disaccha 98.4 0.0002 4.4E-09 71.8 26.0 201 240-460 381-601 (608)
93 TIGR03088 stp2 sugar transfera 98.4 0.00078 1.7E-08 65.8 29.3 112 338-466 255-371 (374)
94 cd03792 GT1_Trehalose_phosphor 98.4 0.00086 1.9E-08 65.5 29.1 110 338-466 252-370 (372)
95 PLN02275 transferase, transfer 98.3 0.0027 5.8E-08 62.0 30.7 77 338-428 286-371 (371)
96 PF02684 LpxB: Lipid-A-disacch 98.3 0.00025 5.4E-09 68.0 22.2 201 240-456 153-366 (373)
97 PLN00142 sucrose synthase 98.3 0.0015 3.4E-08 68.3 29.4 70 357-438 667-744 (815)
98 cd03806 GT1_ALG11_like This fa 98.3 0.0024 5.3E-08 63.3 29.9 79 338-431 305-393 (419)
99 PRK15179 Vi polysaccharide bio 98.3 0.0051 1.1E-07 64.2 33.0 93 337-441 573-674 (694)
100 COG0381 WecB UDP-N-acetylgluco 98.2 9.2E-05 2E-09 69.6 17.0 352 13-467 5-374 (383)
101 KOG3349 Predicted glycosyltran 98.2 1.2E-05 2.6E-10 64.1 9.3 117 276-404 5-132 (170)
102 PLN02949 transferase, transfer 98.2 0.0082 1.8E-07 60.1 30.5 82 337-434 334-427 (463)
103 PRK00654 glgA glycogen synthas 98.1 0.0016 3.4E-08 65.7 24.9 70 350-429 352-427 (466)
104 cd04946 GT1_AmsK_like This fam 98.1 0.00021 4.6E-09 70.6 18.0 166 275-461 230-405 (407)
105 PRK15427 colanic acid biosynth 98.1 0.00032 6.8E-09 69.3 18.6 114 338-466 279-404 (406)
106 cd04950 GT1_like_1 Glycosyltra 98.1 0.0062 1.3E-07 59.5 27.2 105 338-467 254-371 (373)
107 TIGR02095 glgA glycogen/starch 98.0 0.0052 1.1E-07 62.2 26.4 166 276-466 292-471 (473)
108 COG5017 Uncharacterized conser 97.9 0.00019 4.2E-09 56.3 10.8 107 277-404 2-121 (161)
109 cd03791 GT1_Glycogen_synthase_ 97.9 0.011 2.4E-07 59.8 26.9 135 276-429 297-441 (476)
110 PRK15484 lipopolysaccharide 1, 97.9 0.002 4.3E-08 63.1 19.9 112 338-466 257-376 (380)
111 PF13844 Glyco_transf_41: Glyc 97.9 0.00039 8.4E-09 68.1 14.6 148 273-436 283-436 (468)
112 PF00534 Glycos_transf_1: Glyc 97.8 0.00057 1.2E-08 58.6 13.6 145 273-440 13-168 (172)
113 cd03804 GT1_wbaZ_like This fam 97.7 0.00029 6.3E-09 68.2 11.4 134 277-440 197-337 (351)
114 cd04949 GT1_gtfA_like This fam 97.6 0.013 2.7E-07 57.2 21.7 86 338-434 261-349 (372)
115 COG0763 LpxB Lipid A disacchar 97.6 0.008 1.7E-07 56.7 18.6 206 242-465 158-379 (381)
116 PRK10125 putative glycosyl tra 97.6 0.073 1.6E-06 52.5 25.5 114 277-424 243-365 (405)
117 cd01635 Glycosyltransferase_GT 97.5 0.0096 2.1E-07 53.0 17.9 51 338-388 161-217 (229)
118 PLN02501 digalactosyldiacylgly 97.4 0.067 1.4E-06 55.0 23.2 77 340-433 603-684 (794)
119 PLN02316 synthase/transferase 97.4 0.29 6.2E-06 53.3 33.5 116 338-465 900-1031(1036)
120 cd03813 GT1_like_3 This family 97.4 0.014 3.1E-07 59.0 18.9 88 338-439 354-451 (475)
121 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0016 3.5E-08 53.2 7.6 127 276-430 3-135 (135)
122 KOG4626 O-linked N-acetylgluco 97.0 0.02 4.2E-07 56.9 14.3 125 273-404 757-887 (966)
123 TIGR02918 accessory Sec system 96.9 0.08 1.7E-06 53.6 18.3 83 338-431 376-468 (500)
124 PRK09814 beta-1,6-galactofuran 96.9 0.0068 1.5E-07 58.1 10.2 108 338-463 207-331 (333)
125 PF06258 Mito_fiss_Elm1: Mitoc 96.8 0.35 7.5E-06 45.6 20.1 57 347-404 221-280 (311)
126 PHA01633 putative glycosyl tra 96.7 0.075 1.6E-06 50.5 15.5 82 338-429 201-306 (335)
127 PF13524 Glyco_trans_1_2: Glyc 96.7 0.018 3.9E-07 43.4 9.1 83 363-463 9-92 (92)
128 PRK10017 colanic acid biosynth 96.5 0.25 5.5E-06 48.8 18.3 178 266-466 226-423 (426)
129 COG3914 Spy Predicted O-linked 96.3 0.03 6.4E-07 55.4 9.9 126 272-404 427-560 (620)
130 COG1817 Uncharacterized protei 96.2 1 2.2E-05 41.5 24.8 105 18-143 7-115 (346)
131 TIGR02400 trehalose_OtsA alpha 96.1 0.76 1.7E-05 46.0 19.0 103 344-466 342-455 (456)
132 PRK15490 Vi polysaccharide bio 96.0 0.5 1.1E-05 47.8 17.1 61 338-404 455-520 (578)
133 PF06722 DUF1205: Protein of u 95.9 0.0062 1.4E-07 46.2 2.7 49 264-312 30-83 (97)
134 PRK14098 glycogen synthase; Pr 95.7 0.29 6.3E-06 49.6 14.4 164 276-466 308-484 (489)
135 PHA01630 putative group 1 glyc 95.6 0.91 2E-05 43.4 16.5 108 344-466 196-329 (331)
136 PF13579 Glyco_trans_4_4: Glyc 95.5 0.021 4.6E-07 47.6 4.9 95 26-140 6-104 (160)
137 PF13477 Glyco_trans_4_2: Glyc 95.3 0.34 7.3E-06 39.5 11.3 102 12-139 1-106 (139)
138 cd03788 GT1_TPS Trehalose-6-Ph 95.1 0.81 1.8E-05 46.0 15.3 104 342-465 345-459 (460)
139 PRK14099 glycogen synthase; Pr 93.9 3 6.6E-05 42.2 16.3 89 341-437 354-454 (485)
140 PF08660 Alg14: Oligosaccharid 93.6 0.58 1.2E-05 39.8 8.9 114 18-138 5-127 (170)
141 cd03789 GT1_LPS_heptosyltransf 92.3 9.4 0.0002 35.4 20.2 43 12-54 1-45 (279)
142 COG4370 Uncharacterized protei 92.3 1.3 2.7E-05 40.6 9.4 105 344-463 301-409 (412)
143 PRK14501 putative bifunctional 92.2 2.2 4.8E-05 45.6 13.0 112 341-468 345-463 (726)
144 TIGR03713 acc_sec_asp1 accesso 92.0 5.8 0.00013 40.5 15.0 79 338-435 409-493 (519)
145 PLN03063 alpha,alpha-trehalose 91.8 5.8 0.00013 42.9 15.5 104 345-469 363-479 (797)
146 PRK10422 lipopolysaccharide co 91.1 15 0.00033 35.4 20.9 107 10-138 5-114 (352)
147 PF13439 Glyco_transf_4: Glyco 90.8 1.4 3E-05 37.1 8.1 30 20-49 11-40 (177)
148 PLN02939 transferase, transfer 90.6 14 0.00031 40.1 16.5 90 338-437 837-942 (977)
149 PF00731 AIRC: AIR carboxylase 90.0 9.8 0.00021 31.4 13.7 138 276-447 2-149 (150)
150 PF12000 Glyco_trans_4_3: Gkyc 89.9 3.7 7.9E-05 34.9 9.5 38 102-140 56-96 (171)
151 TIGR00715 precor6x_red precorr 88.6 4 8.6E-05 37.3 9.6 34 11-49 1-34 (256)
152 TIGR02919 accessory Sec system 88.3 13 0.00027 37.1 13.5 92 338-443 328-425 (438)
153 COG0438 RfaG Glycosyltransfera 87.2 26 0.00055 32.7 17.5 87 338-438 257-350 (381)
154 TIGR02193 heptsyl_trn_I lipopo 86.4 9.4 0.0002 36.2 11.3 43 12-54 1-45 (319)
155 cd03793 GT1_Glycogen_synthase_ 83.5 7.6 0.00017 39.7 9.3 79 347-430 467-552 (590)
156 KOG1387 Glycosyltransferase [C 82.9 44 0.00095 31.7 22.1 290 92-446 132-445 (465)
157 COG1703 ArgK Putative periplas 82.0 7 0.00015 36.1 7.6 43 7-49 48-90 (323)
158 COG3660 Predicted nucleoside-d 80.5 45 0.00098 30.3 19.2 77 295-382 189-271 (329)
159 PRK12342 hypothetical protein; 80.5 11 0.00024 34.3 8.5 104 23-141 32-145 (254)
160 PRK10916 ADP-heptose:LPS hepto 79.7 12 0.00027 35.9 9.2 103 11-137 1-106 (348)
161 COG0003 ArsA Predicted ATPase 79.5 21 0.00046 33.8 10.3 42 11-52 2-44 (322)
162 PF02951 GSH-S_N: Prokaryotic 78.8 4 8.7E-05 32.3 4.4 38 11-48 1-41 (119)
163 PRK02261 methylaspartate mutas 76.5 5.3 0.00012 32.5 4.8 40 9-48 2-41 (137)
164 PF07429 Glyco_transf_56: 4-al 76.0 74 0.0016 30.3 16.1 82 338-429 245-332 (360)
165 COG1618 Predicted nucleotide k 74.6 18 0.0004 30.2 7.3 42 9-50 4-45 (179)
166 cd02067 B12-binding B12 bindin 74.6 4.6 0.0001 31.9 3.9 36 12-47 1-36 (119)
167 PRK13932 stationary phase surv 74.4 44 0.00095 30.5 10.5 44 7-52 2-45 (257)
168 PF04464 Glyphos_transf: CDP-G 74.0 5.7 0.00012 38.6 5.2 111 338-462 252-368 (369)
169 TIGR02201 heptsyl_trn_III lipo 73.9 85 0.0019 30.0 21.9 106 12-138 1-109 (344)
170 cd00561 CobA_CobO_BtuR ATP:cor 73.5 42 0.00091 28.1 9.4 34 12-45 4-37 (159)
171 PF02571 CbiJ: Precorrin-6x re 72.8 15 0.00033 33.4 7.2 31 11-47 1-31 (249)
172 PF01975 SurE: Survival protei 72.6 8.3 0.00018 33.6 5.3 41 11-52 1-41 (196)
173 PF04413 Glycos_transf_N: 3-De 72.1 13 0.00027 32.2 6.3 100 12-139 22-125 (186)
174 PF05159 Capsule_synth: Capsul 71.8 36 0.00078 31.3 9.8 41 340-383 185-225 (269)
175 KOG0853 Glycosyltransferase [C 71.8 3.2 7E-05 41.3 2.8 63 368-440 381-443 (495)
176 PF02441 Flavoprotein: Flavopr 71.8 5.9 0.00013 31.9 3.9 38 11-49 1-38 (129)
177 PRK03359 putative electron tra 71.6 27 0.00058 31.9 8.5 39 103-141 104-148 (256)
178 PRK04885 ppnK inorganic polyph 71.0 8.4 0.00018 35.4 5.2 53 356-430 35-93 (265)
179 COG0052 RpsB Ribosomal protein 70.1 32 0.0007 30.9 8.3 31 111-141 157-188 (252)
180 PRK10964 ADP-heptose:LPS hepto 70.1 89 0.0019 29.6 12.3 39 11-49 1-41 (322)
181 cd01974 Nitrogenase_MoFe_beta 69.8 44 0.00096 33.3 10.4 97 11-138 304-401 (435)
182 COG0496 SurE Predicted acid ph 69.4 30 0.00065 31.3 8.1 41 11-53 1-41 (252)
183 smart00851 MGS MGS-like domain 69.1 19 0.00041 26.7 5.9 30 27-58 2-31 (90)
184 PF01075 Glyco_transf_9: Glyco 68.8 51 0.0011 29.6 10.0 99 272-382 103-208 (247)
185 cd01980 Chlide_reductase_Y Chl 68.5 38 0.00082 33.6 9.6 92 12-138 282-374 (416)
186 TIGR01470 cysG_Nterm siroheme 68.2 84 0.0018 27.6 11.2 147 274-447 10-165 (205)
187 PF12146 Hydrolase_4: Putative 67.3 17 0.00036 26.3 5.1 34 11-44 16-49 (79)
188 TIGR02015 BchY chlorophyllide 66.9 34 0.00073 34.0 8.8 31 12-47 287-317 (422)
189 PRK05986 cob(I)alamin adenolsy 66.7 71 0.0015 27.7 9.6 36 11-46 23-58 (191)
190 PF02310 B12-binding: B12 bind 66.6 11 0.00024 29.6 4.6 37 11-47 1-37 (121)
191 PRK08057 cobalt-precorrin-6x r 66.3 45 0.00098 30.3 8.8 35 10-49 2-36 (248)
192 PRK06718 precorrin-2 dehydroge 65.6 67 0.0015 28.1 9.6 160 273-462 10-180 (202)
193 PRK13789 phosphoribosylamine-- 64.4 23 0.00049 35.3 7.1 35 9-48 3-37 (426)
194 PF00551 Formyl_trans_N: Formy 64.3 22 0.00047 30.5 6.2 107 11-141 1-110 (181)
195 PF04127 DFP: DNA / pantothena 62.3 5.9 0.00013 34.2 2.3 36 12-47 5-52 (185)
196 TIGR02195 heptsyl_trn_II lipop 62.0 37 0.00081 32.3 8.0 102 12-137 1-105 (334)
197 PRK06732 phosphopantothenate-- 61.9 10 0.00022 34.0 3.8 37 11-47 1-49 (229)
198 PRK02155 ppnK NAD(+)/NADH kina 61.6 17 0.00036 34.0 5.3 53 356-430 63-119 (291)
199 PRK02649 ppnK inorganic polyph 61.6 15 0.00034 34.5 5.1 54 356-431 68-125 (305)
200 TIGR02398 gluc_glyc_Psyn gluco 61.2 1.9E+02 0.0042 29.3 17.7 108 340-467 364-482 (487)
201 cd07039 TPP_PYR_POX Pyrimidine 61.0 1E+02 0.0022 26.0 10.7 28 356-383 63-96 (164)
202 PRK14077 pnk inorganic polypho 61.0 17 0.00037 33.9 5.2 53 356-430 64-120 (287)
203 PF06925 MGDG_synth: Monogalac 60.4 26 0.00056 29.6 5.9 18 101-118 79-97 (169)
204 PF02844 GARS_N: Phosphoribosy 57.8 40 0.00087 25.7 5.8 23 11-38 1-23 (100)
205 PF02374 ArsA_ATPase: Anion-tr 57.7 13 0.00028 35.1 3.8 42 11-52 1-43 (305)
206 PF05673 DUF815: Protein of un 57.6 1.5E+02 0.0032 26.9 11.1 57 399-467 184-247 (249)
207 PRK01911 ppnK inorganic polyph 57.3 20 0.00042 33.6 4.9 54 356-431 64-121 (292)
208 PRK06249 2-dehydropantoate 2-r 56.0 17 0.00038 34.3 4.5 36 8-48 3-38 (313)
209 PRK06849 hypothetical protein; 55.4 25 0.00054 34.5 5.7 37 8-48 2-38 (389)
210 PF01210 NAD_Gly3P_dh_N: NAD-d 55.2 8.8 0.00019 32.1 2.1 32 12-48 1-32 (157)
211 PF09314 DUF1972: Domain of un 54.8 1.4E+02 0.0031 25.7 10.2 39 12-50 3-46 (185)
212 PRK03378 ppnK inorganic polyph 53.8 23 0.0005 33.1 4.8 54 356-431 63-120 (292)
213 PRK04539 ppnK inorganic polyph 53.2 23 0.00051 33.1 4.7 54 356-431 68-125 (296)
214 COG1484 DnaC DNA replication p 53.2 12 0.00026 34.2 2.8 41 11-51 106-146 (254)
215 COG2185 Sbm Methylmalonyl-CoA 52.3 26 0.00056 28.6 4.2 40 8-47 10-49 (143)
216 COG0552 FtsY Signal recognitio 52.0 1.1E+02 0.0023 29.1 8.7 45 9-53 138-182 (340)
217 PRK03372 ppnK inorganic polyph 51.9 26 0.00056 33.0 4.8 54 356-431 72-129 (306)
218 COG0771 MurD UDP-N-acetylmuram 51.8 67 0.0015 32.0 7.8 33 10-47 7-39 (448)
219 PRK08305 spoVFB dipicolinate s 51.7 24 0.00051 30.7 4.2 37 11-48 6-43 (196)
220 PRK01185 ppnK inorganic polyph 51.7 27 0.00059 32.2 4.9 54 356-431 52-106 (271)
221 PRK13933 stationary phase surv 51.3 1.6E+02 0.0035 26.9 9.6 39 11-51 1-39 (253)
222 PRK07688 thiamine/molybdopteri 51.2 1.2E+02 0.0025 29.2 9.2 30 11-45 25-55 (339)
223 cd01424 MGS_CPS_II Methylglyox 50.4 61 0.0013 25.0 6.1 84 22-137 10-100 (110)
224 COG4088 Predicted nucleotide k 50.3 22 0.00048 31.1 3.7 36 11-46 2-37 (261)
225 COG2910 Putative NADH-flavin r 50.3 33 0.00071 29.4 4.6 33 11-47 1-33 (211)
226 COG2099 CobK Precorrin-6x redu 50.2 1.1E+02 0.0023 27.8 8.1 34 10-48 2-35 (257)
227 cd01141 TroA_d Periplasmic bin 50.2 23 0.00049 30.4 4.0 38 102-139 61-99 (186)
228 PRK03501 ppnK inorganic polyph 49.9 33 0.00072 31.5 5.1 55 356-431 39-98 (264)
229 PRK14075 pnk inorganic polypho 49.9 33 0.00071 31.4 5.1 54 355-430 40-94 (256)
230 COG0801 FolK 7,8-dihydro-6-hyd 49.9 35 0.00075 28.5 4.7 29 276-304 3-31 (160)
231 TIGR02655 circ_KaiC circadian 49.8 29 0.00063 35.2 5.2 42 12-53 265-306 (484)
232 PF10727 Rossmann-like: Rossma 49.6 27 0.00058 28.0 3.9 42 1-47 1-42 (127)
233 COG2607 Predicted ATPase (AAA+ 49.5 2E+02 0.0044 26.1 9.9 58 399-468 216-280 (287)
234 PLN02939 transferase, transfer 49.3 35 0.00077 37.3 5.8 42 8-49 479-526 (977)
235 PRK09620 hypothetical protein; 48.9 22 0.00048 31.9 3.7 37 11-47 4-52 (229)
236 PRK06522 2-dehydropantoate 2-r 48.9 22 0.00047 33.3 4.0 31 11-46 1-31 (304)
237 TIGR02370 pyl_corrinoid methyl 48.7 38 0.00082 29.6 5.1 40 9-48 83-122 (197)
238 TIGR03878 thermo_KaiC_2 KaiC d 48.3 1.6E+02 0.0034 27.0 9.4 38 12-49 38-75 (259)
239 PRK11914 diacylglycerol kinase 47.7 1.2E+02 0.0025 28.6 8.7 29 357-385 65-97 (306)
240 cd02070 corrinoid_protein_B12- 47.7 42 0.0009 29.4 5.3 39 9-47 81-119 (201)
241 PRK12921 2-dehydropantoate 2-r 47.0 15 0.00032 34.5 2.5 31 11-46 1-31 (305)
242 PLN02948 phosphoribosylaminoim 46.6 3.6E+02 0.0079 28.1 15.2 88 357-450 466-562 (577)
243 cd02071 MM_CoA_mut_B12_BD meth 46.5 32 0.00069 27.3 4.0 36 12-47 1-36 (122)
244 PRK01231 ppnK inorganic polyph 46.4 39 0.00085 31.6 5.1 54 356-431 62-119 (295)
245 PLN02470 acetolactate synthase 46.2 51 0.0011 34.4 6.5 92 280-383 2-109 (585)
246 PRK13935 stationary phase surv 46.1 2.2E+02 0.0048 26.0 9.6 39 11-51 1-39 (253)
247 cd03466 Nitrogenase_NifN_2 Nit 46.0 1.7E+02 0.0037 29.1 9.9 33 102-138 363-396 (429)
248 cd01965 Nitrogenase_MoFe_beta_ 45.5 82 0.0018 31.4 7.6 32 103-138 363-395 (428)
249 PRK06270 homoserine dehydrogen 45.2 1.7E+02 0.0037 28.1 9.4 58 347-404 80-149 (341)
250 PRK02231 ppnK inorganic polyph 45.1 29 0.00062 32.1 3.9 52 356-429 42-97 (272)
251 PRK06321 replicative DNA helic 45.0 1.5E+02 0.0032 30.0 9.2 37 13-49 229-266 (472)
252 cd01425 RPS2 Ribosomal protein 44.8 1.1E+02 0.0023 26.6 7.3 32 110-141 127-159 (193)
253 PRK14099 glycogen synthase; Pr 44.7 39 0.00084 34.3 5.2 38 9-48 2-47 (485)
254 cd07035 TPP_PYR_POX_like Pyrim 44.5 51 0.0011 27.2 5.2 27 357-383 60-92 (155)
255 PLN02929 NADH kinase 44.4 42 0.00091 31.4 4.9 67 355-431 63-138 (301)
256 PF08323 Glyco_transf_5: Starc 44.1 20 0.00043 32.6 2.7 23 26-48 21-43 (245)
257 PRK13931 stationary phase surv 44.1 98 0.0021 28.4 7.1 25 27-51 16-43 (261)
258 cd01840 SGNH_hydrolase_yrhL_li 44.0 1.6E+02 0.0034 24.1 8.0 39 273-312 50-88 (150)
259 PRK14619 NAD(P)H-dependent gly 43.8 35 0.00076 32.2 4.5 34 9-47 3-36 (308)
260 PRK13059 putative lipid kinase 43.3 1.5E+02 0.0032 27.8 8.6 30 356-385 56-91 (295)
261 PRK10964 ADP-heptose:LPS hepto 43.2 24 0.00053 33.4 3.4 136 275-429 179-321 (322)
262 TIGR01285 nifN nitrogenase mol 43.0 61 0.0013 32.3 6.2 85 11-138 312-397 (432)
263 PRK13982 bifunctional SbtC-lik 42.9 34 0.00073 34.4 4.3 39 10-48 256-306 (475)
264 cd01423 MGS_CPS_I_III Methylgl 42.6 1E+02 0.0022 24.0 6.3 40 15-57 4-43 (116)
265 PRK03708 ppnK inorganic polyph 42.5 38 0.00082 31.4 4.3 53 356-430 57-112 (277)
266 TIGR02195 heptsyl_trn_II lipop 41.8 1.6E+02 0.0035 27.9 8.9 97 272-382 172-276 (334)
267 PF04558 tRNA_synt_1c_R1: Glut 41.7 23 0.00051 29.8 2.6 31 388-429 101-131 (164)
268 PRK14076 pnk inorganic polypho 41.5 43 0.00092 34.8 5.0 54 356-431 348-405 (569)
269 COG2085 Predicted dinucleotide 41.5 45 0.00097 29.3 4.3 33 11-48 2-34 (211)
270 PRK13934 stationary phase surv 40.8 2.9E+02 0.0064 25.4 9.7 39 11-51 1-39 (266)
271 TIGR01286 nifK nitrogenase mol 40.7 2.5E+02 0.0053 28.8 10.1 33 102-138 428-461 (515)
272 PLN02935 Bifunctional NADH kin 40.7 52 0.0011 33.1 5.1 53 356-431 262-319 (508)
273 TIGR00708 cobA cob(I)alamin ad 40.6 2.3E+02 0.005 24.1 9.7 34 11-44 6-39 (173)
274 COG0541 Ffh Signal recognition 40.5 2.9E+02 0.0063 27.4 9.9 45 10-54 100-144 (451)
275 COG0240 GpsA Glycerol-3-phosph 40.3 41 0.0009 31.8 4.2 33 10-47 1-33 (329)
276 PRK10490 sensor protein KdpD; 40.2 32 0.0007 38.0 4.1 41 9-49 23-63 (895)
277 cd02032 Bchl_like This family 40.1 47 0.001 30.4 4.7 37 11-47 1-37 (267)
278 PF07015 VirC1: VirC1 protein; 40.0 68 0.0015 28.7 5.3 41 13-53 4-45 (231)
279 PRK10916 ADP-heptose:LPS hepto 39.8 2.8E+02 0.006 26.6 10.1 97 273-382 179-286 (348)
280 PRK12311 rpsB 30S ribosomal pr 39.8 1.6E+02 0.0036 27.9 8.1 32 110-141 152-184 (326)
281 TIGR01281 DPOR_bchL light-inde 39.8 49 0.0011 30.4 4.7 36 11-46 1-36 (268)
282 PF14626 RNase_Zc3h12a_2: Zc3h 39.7 29 0.00062 27.2 2.5 32 24-55 9-40 (122)
283 PRK11519 tyrosine kinase; Prov 39.5 1.4E+02 0.003 32.2 8.6 37 11-47 526-564 (719)
284 PRK14098 glycogen synthase; Pr 39.3 51 0.0011 33.5 5.1 37 10-48 5-49 (489)
285 PF02776 TPP_enzyme_N: Thiamin 39.3 1.8E+02 0.0039 24.5 7.8 30 355-384 63-98 (172)
286 TIGR02852 spore_dpaB dipicolin 39.0 44 0.00096 28.8 3.9 37 12-48 2-38 (187)
287 PRK13337 putative lipid kinase 38.9 2.2E+02 0.0048 26.7 9.1 30 356-385 57-92 (304)
288 CHL00072 chlL photochlorophyll 38.6 57 0.0012 30.5 5.0 38 11-48 1-38 (290)
289 PRK13604 luxD acyl transferase 38.2 66 0.0014 30.3 5.2 35 10-44 36-70 (307)
290 cd07038 TPP_PYR_PDC_IPDC_like 38.1 2.4E+02 0.0052 23.6 10.4 27 357-383 60-92 (162)
291 PRK08229 2-dehydropantoate 2-r 38.1 39 0.00084 32.3 3.9 33 10-47 2-34 (341)
292 PF03446 NAD_binding_2: NAD bi 37.8 37 0.00081 28.4 3.3 31 10-45 1-31 (163)
293 PRK02797 4-alpha-L-fucosyltran 37.8 3.6E+02 0.0077 25.5 16.3 80 338-427 206-291 (322)
294 cd01968 Nitrogenase_NifE_I Nit 37.7 1.2E+02 0.0027 29.9 7.4 31 104-138 349-380 (410)
295 COG3349 Uncharacterized conser 37.5 36 0.00078 34.1 3.5 33 11-48 1-33 (485)
296 PLN02859 glutamine-tRNA ligase 37.5 63 0.0014 34.6 5.4 64 388-462 103-175 (788)
297 TIGR00750 lao LAO/AO transport 37.4 1.3E+02 0.0029 28.2 7.3 40 10-49 34-73 (300)
298 TIGR00087 surE 5'/3'-nucleotid 37.3 2.1E+02 0.0045 26.0 8.1 41 11-53 1-41 (244)
299 PRK08155 acetolactate synthase 37.1 1.2E+02 0.0026 31.5 7.5 28 356-383 76-109 (564)
300 PRK00346 surE 5'(3')-nucleotid 37.0 3.3E+02 0.0071 24.8 9.9 40 11-52 1-40 (250)
301 PRK07313 phosphopantothenoylcy 36.9 51 0.0011 28.3 4.0 43 11-54 2-44 (182)
302 PRK05920 aromatic acid decarbo 36.9 56 0.0012 28.7 4.3 37 11-48 4-40 (204)
303 PRK08322 acetolactate synthase 36.7 63 0.0014 33.4 5.4 28 356-383 63-96 (547)
304 PF07355 GRDB: Glycine/sarcosi 36.5 64 0.0014 30.7 4.8 43 98-140 67-119 (349)
305 PF05225 HTH_psq: helix-turn-h 36.3 56 0.0012 20.6 3.1 25 416-440 1-26 (45)
306 COG0569 TrkA K+ transport syst 36.1 47 0.001 29.7 3.8 31 11-46 1-31 (225)
307 cd02069 methionine_synthase_B1 35.9 74 0.0016 28.2 4.9 39 9-47 87-125 (213)
308 KOG0780 Signal recognition par 35.5 2.9E+02 0.0063 27.0 8.8 43 11-53 102-144 (483)
309 PF13450 NAD_binding_8: NAD(P) 35.5 46 0.00099 23.1 2.9 19 28-46 9-27 (68)
310 PRK14618 NAD(P)H-dependent gly 35.5 54 0.0012 31.2 4.4 33 10-47 4-36 (328)
311 cd00861 ProRS_anticodon_short 35.3 71 0.0015 23.5 4.2 35 11-45 2-38 (94)
312 COG0859 RfaF ADP-heptose:LPS h 35.1 4E+02 0.0087 25.3 18.4 104 10-137 1-107 (334)
313 PF09001 DUF1890: Domain of un 35.1 45 0.00098 26.9 3.0 27 22-48 11-37 (139)
314 cd07037 TPP_PYR_MenD Pyrimidin 35.1 1E+02 0.0022 25.9 5.5 27 357-383 61-93 (162)
315 PF08452 DNAP_B_exo_N: DNA pol 35.1 24 0.00052 18.1 1.0 17 263-279 4-20 (22)
316 PF10083 DUF2321: Uncharacteri 34.8 69 0.0015 26.4 4.1 72 382-466 78-150 (158)
317 COG1797 CobB Cobyrinic acid a, 34.8 1.8E+02 0.0039 28.8 7.6 27 18-44 9-35 (451)
318 PF02572 CobA_CobO_BtuR: ATP:c 34.8 2.8E+02 0.0061 23.6 8.0 35 12-46 5-39 (172)
319 TIGR00147 lipid kinase, YegS/R 34.7 1.6E+02 0.0035 27.4 7.4 30 356-385 57-92 (293)
320 PRK13057 putative lipid kinase 34.7 2.2E+02 0.0047 26.4 8.2 30 356-385 50-83 (287)
321 TIGR02193 heptsyl_trn_I lipopo 34.5 40 0.00087 31.8 3.3 135 273-428 178-319 (319)
322 TIGR02853 spore_dpaA dipicolin 34.4 53 0.0011 30.6 4.0 22 26-47 12-33 (287)
323 PHA02754 hypothetical protein; 34.3 63 0.0014 21.5 3.0 24 424-447 7-30 (67)
324 PF10820 DUF2543: Protein of u 34.2 1.4E+02 0.003 20.8 4.8 40 421-466 37-76 (81)
325 PRK07206 hypothetical protein; 34.1 1.3E+02 0.0028 29.7 7.0 32 12-48 4-35 (416)
326 PRK13236 nitrogenase reductase 34.0 80 0.0017 29.6 5.2 39 9-47 4-43 (296)
327 cd02034 CooC The accessory pro 33.8 99 0.0021 24.2 4.9 37 12-48 1-37 (116)
328 TIGR03026 NDP-sugDHase nucleot 33.5 57 0.0012 32.2 4.3 31 11-46 1-31 (411)
329 PRK06276 acetolactate synthase 33.5 88 0.0019 32.7 5.9 28 356-383 63-96 (586)
330 PF03721 UDPG_MGDP_dh_N: UDP-g 33.0 69 0.0015 27.6 4.2 30 11-45 1-30 (185)
331 PRK12446 undecaprenyldiphospho 33.0 1.1E+02 0.0024 29.5 6.1 33 350-382 85-120 (352)
332 PRK04148 hypothetical protein; 32.9 96 0.0021 25.1 4.7 30 9-44 16-45 (134)
333 cd01121 Sms Sms (bacterial rad 32.7 2.5E+02 0.0055 27.3 8.4 37 13-49 85-121 (372)
334 PRK10422 lipopolysaccharide co 32.3 2.5E+02 0.0055 26.9 8.5 28 110-140 262-289 (352)
335 PRK06719 precorrin-2 dehydroge 32.2 70 0.0015 26.7 4.0 32 11-47 14-45 (157)
336 PF10093 DUF2331: Uncharacteri 32.0 90 0.002 30.2 5.1 99 287-394 192-298 (374)
337 PRK08223 hypothetical protein; 31.9 3.9E+02 0.0085 24.9 9.1 29 11-44 28-57 (287)
338 cd03789 GT1_LPS_heptosyltransf 31.8 2.9E+02 0.0063 25.3 8.6 100 12-141 123-226 (279)
339 cd01147 HemV-2 Metal binding p 31.7 62 0.0013 29.4 4.0 38 102-140 66-106 (262)
340 COG2084 MmsB 3-hydroxyisobutyr 31.7 69 0.0015 29.8 4.2 32 11-47 1-32 (286)
341 PF04244 DPRP: Deoxyribodipyri 31.5 46 0.001 29.7 2.9 25 23-47 47-71 (224)
342 TIGR00379 cobB cobyrinic acid 31.4 5.5E+02 0.012 25.8 11.1 34 13-46 2-36 (449)
343 PRK13869 plasmid-partitioning 31.2 91 0.002 30.8 5.2 40 8-47 118-159 (405)
344 PF00282 Pyridoxal_deC: Pyrido 31.0 1.5E+02 0.0032 28.9 6.7 69 357-429 104-190 (373)
345 PRK09302 circadian clock prote 30.9 1.6E+02 0.0034 30.2 7.1 40 12-51 275-314 (509)
346 KOG2941 Beta-1,4-mannosyltrans 30.9 4.9E+02 0.011 25.1 11.2 42 7-48 9-50 (444)
347 PRK14852 hypothetical protein; 30.7 3.6E+02 0.0077 30.1 9.7 29 11-44 333-362 (989)
348 PF00070 Pyr_redox: Pyridine n 30.5 79 0.0017 22.5 3.6 24 26-49 10-33 (80)
349 PF03720 UDPG_MGDP_dh_C: UDP-g 30.4 61 0.0013 24.9 3.2 21 25-45 17-37 (106)
350 PRK14620 NAD(P)H-dependent gly 30.3 61 0.0013 30.8 3.8 31 11-46 1-31 (326)
351 PF01497 Peripla_BP_2: Peripla 30.1 51 0.0011 29.3 3.1 38 105-142 55-93 (238)
352 PRK05636 replicative DNA helic 30.0 1.5E+02 0.0033 30.3 6.6 38 12-49 267-305 (505)
353 PRK04761 ppnK inorganic polyph 29.9 53 0.0012 29.8 3.1 28 356-383 25-56 (246)
354 TIGR02113 coaC_strep phosphopa 29.7 83 0.0018 26.9 4.1 41 12-53 2-42 (177)
355 TIGR01162 purE phosphoribosyla 29.7 3.3E+02 0.0072 22.7 14.3 136 279-448 3-148 (156)
356 COG1058 CinA Predicted nucleot 29.6 2.9E+02 0.0063 25.2 7.7 28 110-137 60-92 (255)
357 KOG3339 Predicted glycosyltran 29.6 3.7E+02 0.008 23.2 8.5 26 11-37 39-64 (211)
358 KOG0202 Ca2+ transporting ATPa 29.5 7.8E+02 0.017 26.9 12.7 171 275-467 572-749 (972)
359 PF02702 KdpD: Osmosensitive K 29.5 1E+02 0.0023 26.9 4.6 40 10-49 5-44 (211)
360 COG0041 PurE Phosphoribosylcar 29.5 3.3E+02 0.0072 22.6 15.6 145 276-450 4-154 (162)
361 TIGR03609 S_layer_CsaB polysac 29.4 3.9E+02 0.0084 24.8 9.1 33 14-47 5-37 (298)
362 PRK03094 hypothetical protein; 29.4 50 0.0011 23.9 2.2 21 27-47 10-30 (80)
363 COG0859 RfaF ADP-heptose:LPS h 29.4 2.6E+02 0.0056 26.7 8.0 99 11-141 176-279 (334)
364 PF12695 Abhydrolase_5: Alpha/ 29.3 1.2E+02 0.0025 24.2 4.9 34 14-47 2-35 (145)
365 TIGR01915 npdG NADPH-dependent 29.2 62 0.0014 28.7 3.5 31 11-46 1-32 (219)
366 PRK05647 purN phosphoribosylgl 29.0 2.7E+02 0.0058 24.3 7.3 34 11-47 2-37 (200)
367 cd01983 Fer4_NifH The Fer4_Nif 29.0 1.2E+02 0.0027 21.8 4.7 33 13-45 2-34 (99)
368 TIGR03453 partition_RepA plasm 28.6 1E+02 0.0023 30.1 5.2 42 7-48 100-143 (387)
369 PRK08309 short chain dehydroge 28.5 85 0.0018 26.8 4.0 31 11-46 1-31 (177)
370 PRK06029 3-octaprenyl-4-hydrox 28.3 91 0.002 26.9 4.1 38 11-49 2-40 (185)
371 PRK00885 phosphoribosylamine-- 28.0 1.6E+02 0.0035 29.1 6.5 29 11-44 1-30 (420)
372 CHL00076 chlB photochlorophyll 27.8 65 0.0014 33.0 3.6 32 104-139 367-399 (513)
373 PRK14092 2-amino-4-hydroxy-6-h 27.7 1.4E+02 0.0031 25.1 5.0 31 272-302 5-35 (163)
374 PTZ00318 NADH dehydrogenase-li 27.7 92 0.002 30.9 4.7 38 7-49 7-44 (424)
375 PRK00784 cobyric acid synthase 27.6 2.8E+02 0.0061 28.2 8.2 35 12-46 4-39 (488)
376 PF01075 Glyco_transf_9: Glyco 27.6 1.7E+02 0.0037 26.2 6.1 104 10-142 105-212 (247)
377 COG2210 Peroxiredoxin family p 27.3 1E+02 0.0023 24.9 3.9 31 17-47 10-40 (137)
378 PRK02910 light-independent pro 27.3 69 0.0015 32.8 3.8 32 104-139 355-387 (519)
379 PF09334 tRNA-synt_1g: tRNA sy 27.2 53 0.0011 32.2 2.8 32 19-50 14-48 (391)
380 PF05014 Nuc_deoxyrib_tr: Nucl 27.2 1.5E+02 0.0033 22.8 5.0 21 364-384 74-97 (113)
381 PRK01077 cobyrinic acid a,c-di 27.1 4.8E+02 0.01 26.2 9.6 36 12-47 5-41 (451)
382 PLN02172 flavin-containing mon 27.1 85 0.0018 31.6 4.3 41 1-46 1-41 (461)
383 COG0151 PurD Phosphoribosylami 27.1 5.3E+02 0.011 25.5 9.3 33 11-48 1-33 (428)
384 PF01695 IstB_IS21: IstB-like 27.1 1.2E+02 0.0027 25.8 4.8 37 11-47 48-84 (178)
385 PRK00094 gpsA NAD(P)H-dependen 27.0 79 0.0017 29.9 4.0 32 11-47 2-33 (325)
386 TIGR01917 gly_red_sel_B glycin 27.0 1.1E+02 0.0023 30.1 4.6 25 359-383 347-371 (431)
387 TIGR01918 various_sel_PB selen 27.0 1.1E+02 0.0023 30.1 4.7 25 359-383 347-371 (431)
388 COG1066 Sms Predicted ATP-depe 27.0 1.1E+02 0.0024 29.9 4.8 36 13-49 96-131 (456)
389 PF07991 IlvN: Acetohydroxy ac 27.0 62 0.0013 27.2 2.7 42 12-58 6-49 (165)
390 COG1698 Uncharacterized protei 26.9 2.6E+02 0.0057 20.7 5.5 50 418-467 16-69 (93)
391 PRK07773 replicative DNA helic 26.8 3.1E+02 0.0067 30.4 8.8 38 13-50 220-258 (886)
392 TIGR01278 DPOR_BchB light-inde 26.8 69 0.0015 32.7 3.7 32 104-139 357-389 (511)
393 PF06180 CbiK: Cobalt chelatas 26.6 1E+02 0.0023 28.2 4.4 37 276-312 3-42 (262)
394 PF01372 Melittin: Melittin; 26.5 8.3 0.00018 20.5 -1.5 17 365-381 1-17 (26)
395 TIGR00421 ubiX_pad polyprenyl 26.5 75 0.0016 27.3 3.3 38 13-51 2-39 (181)
396 COG0665 DadA Glycine/D-amino a 26.5 83 0.0018 30.5 4.1 34 9-47 3-36 (387)
397 TIGR01007 eps_fam capsular exo 26.4 1.6E+02 0.0034 25.6 5.5 36 11-46 17-54 (204)
398 TIGR02482 PFKA_ATP 6-phosphofr 26.3 81 0.0017 29.7 3.7 36 352-387 87-126 (301)
399 PLN02727 NAD kinase 26.3 1.2E+02 0.0025 33.2 5.2 55 355-431 742-800 (986)
400 PLN02695 GDP-D-mannose-3',5'-e 26.2 1.4E+02 0.003 29.0 5.5 35 8-46 19-53 (370)
401 PF00289 CPSase_L_chain: Carba 26.2 1.4E+02 0.0031 23.1 4.5 71 289-373 11-89 (110)
402 PRK14477 bifunctional nitrogen 26.2 2.3E+02 0.0051 31.4 7.7 32 104-139 382-414 (917)
403 PLN03064 alpha,alpha-trehalose 26.1 2E+02 0.0043 31.9 7.0 105 345-468 447-562 (934)
404 PF00391 PEP-utilizers: PEP-ut 26.1 1E+02 0.0022 22.2 3.5 30 110-139 30-60 (80)
405 COG2120 Uncharacterized protei 26.1 1.4E+02 0.003 26.9 5.1 41 7-47 7-47 (237)
406 PRK06124 gluconate 5-dehydroge 25.9 1.4E+02 0.0031 26.8 5.4 43 1-46 1-43 (256)
407 cd02037 MRP-like MRP (Multiple 25.9 1.2E+02 0.0026 25.4 4.5 30 18-47 8-37 (169)
408 cd02065 B12-binding_like B12 b 25.8 1.1E+02 0.0024 23.9 4.0 34 13-46 2-35 (125)
409 KOG3062 RNA polymerase II elon 25.7 1.3E+02 0.0028 26.9 4.5 29 12-40 3-31 (281)
410 PRK12595 bifunctional 3-deoxy- 25.6 6.2E+02 0.014 24.5 10.9 123 282-428 124-249 (360)
411 TIGR00460 fmt methionyl-tRNA f 25.6 1.1E+02 0.0023 29.0 4.5 33 11-48 1-33 (313)
412 TIGR03880 KaiC_arch_3 KaiC dom 25.3 1.7E+02 0.0036 25.9 5.5 40 12-51 18-57 (224)
413 PLN02778 3,5-epimerase/4-reduc 25.2 1.8E+02 0.004 27.1 6.0 35 6-44 5-39 (298)
414 COG3640 CooC CO dehydrogenase 25.0 2E+02 0.0043 26.0 5.6 48 11-58 1-49 (255)
415 PF00982 Glyco_transf_20: Glyc 25.0 2.6E+02 0.0057 28.3 7.3 105 342-466 357-473 (474)
416 PRK09219 xanthine phosphoribos 25.0 1.7E+02 0.0038 25.3 5.3 39 101-139 40-80 (189)
417 PF03698 UPF0180: Uncharacteri 24.8 66 0.0014 23.4 2.2 22 27-48 10-31 (80)
418 cd01075 NAD_bind_Leu_Phe_Val_D 24.7 1E+02 0.0022 26.9 3.9 31 9-44 27-57 (200)
419 cd03784 GT1_Gtf_like This fami 24.6 4.5E+02 0.0098 25.5 9.0 35 276-312 3-37 (401)
420 COG2039 Pcp Pyrrolidone-carbox 24.5 1.3E+02 0.0029 25.9 4.2 37 11-47 1-42 (207)
421 PF08357 SEFIR: SEFIR domain; 24.4 92 0.002 25.5 3.4 31 13-43 4-35 (150)
422 PF06506 PrpR_N: Propionate ca 24.4 32 0.0007 29.3 0.7 33 353-386 31-63 (176)
423 cd01981 Pchlide_reductase_B Pc 24.3 87 0.0019 31.2 3.8 32 104-139 363-395 (430)
424 PRK07525 sulfoacetaldehyde ace 24.2 1.8E+02 0.004 30.3 6.3 28 356-383 68-101 (588)
425 PHA02519 plasmid partition pro 24.0 1.5E+02 0.0033 29.0 5.3 37 9-45 104-142 (387)
426 cd03115 SRP The signal recogni 24.0 1.8E+02 0.0038 24.4 5.2 38 13-50 3-40 (173)
427 PF02780 Transketolase_C: Tran 23.9 1.4E+02 0.0031 23.4 4.4 34 12-47 11-44 (124)
428 PF04695 Pex14_N: Peroxisomal 23.9 92 0.002 25.3 3.2 49 417-468 2-50 (136)
429 PF15278 Sec3_C_2: Sec3 exocys 23.9 2.7E+02 0.0058 19.7 5.4 30 418-447 13-44 (86)
430 TIGR03457 sulphoacet_xsc sulfo 23.8 1.5E+02 0.0034 30.8 5.7 28 356-383 64-97 (579)
431 PF03685 UPF0147: Uncharacteri 23.5 2.8E+02 0.006 20.4 5.1 50 418-467 9-62 (85)
432 TIGR02113 coaC_strep phosphopa 23.5 2E+02 0.0043 24.6 5.3 52 375-426 111-175 (177)
433 TIGR00143 hypF [NiFe] hydrogen 23.4 1.9E+02 0.0042 31.0 6.2 56 94-149 399-454 (711)
434 PRK09841 cryptic autophosphory 23.3 4.6E+02 0.01 28.2 9.2 38 11-48 531-570 (726)
435 PRK13054 lipid kinase; Reviewe 23.3 2.3E+02 0.0049 26.5 6.3 30 356-385 56-93 (300)
436 PRK13010 purU formyltetrahydro 23.2 5E+02 0.011 24.3 8.3 102 294-428 160-263 (289)
437 PF01656 CbiA: CobQ/CobB/MinD/ 23.2 1.2E+02 0.0026 25.8 4.2 32 17-48 6-37 (195)
438 PF06564 YhjQ: YhjQ protein; 23.2 1.6E+02 0.0035 26.6 4.9 34 12-45 3-37 (243)
439 TIGR00732 dprA DNA protecting 23.2 5.3E+02 0.012 22.9 9.5 47 358-404 158-211 (220)
440 TIGR00877 purD phosphoribosyla 23.2 3.7E+02 0.0081 26.5 8.1 33 11-48 1-33 (423)
441 COG0451 WcaG Nucleoside-diphos 23.2 1.1E+02 0.0024 28.5 4.1 32 12-47 2-33 (314)
442 PRK09330 cell division protein 23.2 7.2E+02 0.016 24.4 10.8 120 7-143 10-138 (384)
443 PF02826 2-Hacid_dh_C: D-isome 23.0 4.7E+02 0.01 22.1 8.6 104 273-425 36-142 (178)
444 PF03693 RHH_2: Uncharacterise 23.0 1.7E+02 0.0037 21.2 4.1 48 417-467 30-77 (80)
445 PRK10037 cell division protein 23.0 1.2E+02 0.0027 27.4 4.3 35 12-46 3-38 (250)
446 cd01148 TroA_a Metal binding p 22.9 81 0.0017 29.1 3.1 38 102-139 71-113 (284)
447 COG2327 WcaK Polysaccharide py 22.9 4.6E+02 0.01 25.6 8.1 86 338-436 266-357 (385)
448 PRK02645 ppnK inorganic polyph 22.8 83 0.0018 29.7 3.1 29 356-384 57-89 (305)
449 COG2099 CobK Precorrin-6x redu 22.7 1.1E+02 0.0023 27.8 3.6 35 103-138 188-228 (257)
450 TIGR00064 ftsY signal recognit 22.7 2.2E+02 0.0048 26.3 5.9 40 12-51 74-113 (272)
451 TIGR00118 acolac_lg acetolacta 22.6 3E+02 0.0065 28.5 7.5 28 356-383 64-97 (558)
452 cd00763 Bacterial_PFK Phosphof 22.6 1E+02 0.0023 29.2 3.7 37 351-387 87-126 (317)
453 PRK00771 signal recognition pa 22.6 1.9E+02 0.0042 28.9 5.7 42 10-51 95-136 (437)
454 PRK10117 trehalose-6-phosphate 22.4 3.2E+02 0.0069 27.6 7.2 105 344-468 338-454 (474)
455 PRK06835 DNA replication prote 22.4 1.5E+02 0.0032 28.4 4.7 38 11-48 184-221 (329)
456 PF05728 UPF0227: Uncharacteri 22.3 1.5E+02 0.0032 25.6 4.3 40 102-141 48-90 (187)
457 PRK07710 acetolactate synthase 22.3 5.9E+02 0.013 26.4 9.6 28 356-383 78-111 (571)
458 CHL00194 ycf39 Ycf39; Provisio 22.3 1.7E+02 0.0036 27.6 5.2 32 11-46 1-32 (317)
459 cd03412 CbiK_N Anaerobic cobal 22.3 1.6E+02 0.0035 23.5 4.3 37 275-311 2-40 (127)
460 cd07354 HN_L-delphilin-R1_like 22.2 3.1E+02 0.0067 19.9 5.0 47 416-470 4-51 (80)
461 PF08766 DEK_C: DEK C terminal 22.1 2.4E+02 0.0052 18.5 5.5 49 416-464 1-51 (54)
462 PRK00652 lpxK tetraacyldisacch 22.1 1.4E+02 0.0031 28.4 4.5 37 12-48 51-89 (325)
463 TIGR01501 MthylAspMutase methy 22.0 1.7E+02 0.0037 23.7 4.3 38 11-48 2-39 (134)
464 PRK05708 2-dehydropantoate 2-r 22.0 91 0.002 29.3 3.3 33 10-47 2-34 (305)
465 PRK14974 cell division protein 21.9 2.1E+02 0.0046 27.4 5.7 41 10-50 140-180 (336)
466 PF03853 YjeF_N: YjeF-related 21.8 1.1E+02 0.0023 25.9 3.4 38 8-46 23-60 (169)
467 COG0059 IlvC Ketol-acid reduct 21.7 77 0.0017 29.6 2.5 33 12-49 20-52 (338)
468 TIGR00639 PurN phosphoribosylg 21.7 5.3E+02 0.011 22.3 8.3 34 11-47 1-36 (190)
469 PRK15062 hydrogenase isoenzyme 21.7 5.1E+02 0.011 25.0 8.0 46 264-310 121-166 (364)
470 PRK06753 hypothetical protein; 21.6 1.5E+02 0.0031 28.7 4.8 30 11-45 1-30 (373)
471 PRK12770 putative glutamate sy 21.6 1.7E+02 0.0036 28.2 5.1 36 7-47 15-50 (352)
472 PF06792 UPF0261: Uncharacteri 21.5 7.1E+02 0.015 24.5 9.1 98 272-387 183-281 (403)
473 COG0503 Apt Adenine/guanine ph 21.4 2.2E+02 0.0048 24.3 5.2 37 102-138 44-82 (179)
474 PRK13055 putative lipid kinase 21.2 3.6E+02 0.0078 25.7 7.2 29 357-385 60-94 (334)
475 PRK07417 arogenate dehydrogena 21.2 1.2E+02 0.0026 28.1 3.8 31 11-46 1-31 (279)
476 PRK08939 primosomal protein Dn 21.2 77 0.0017 29.9 2.6 37 11-47 157-193 (306)
477 PLN02487 zeta-carotene desatur 21.2 1.8E+02 0.0039 30.2 5.4 33 9-46 74-106 (569)
478 PRK08979 acetolactate synthase 21.1 5E+02 0.011 27.0 8.8 121 293-431 8-153 (572)
479 TIGR03659 IsdE heme ABC transp 21.0 1.3E+02 0.0028 27.9 4.1 38 102-139 83-120 (289)
480 COG0467 RAD55 RecA-superfamily 21.0 1.5E+02 0.0032 27.1 4.4 44 11-54 24-67 (260)
481 PHA02698 hypothetical protein; 21.0 1.6E+02 0.0035 20.8 3.3 31 413-443 39-69 (89)
482 PRK07313 phosphopantothenoylcy 20.9 5.4E+02 0.012 22.0 12.9 57 373-429 108-179 (182)
483 TIGR02483 PFK_mixed phosphofru 20.8 1.2E+02 0.0026 28.8 3.8 36 352-387 90-128 (324)
484 cd00550 ArsA_ATPase Oxyanion-t 20.8 1.8E+02 0.0038 26.5 4.8 37 13-49 3-39 (254)
485 COG0297 GlgA Glycogen synthase 20.8 9E+02 0.02 24.6 16.6 121 289-429 309-441 (487)
486 PRK14476 nitrogenase molybdenu 20.7 2.2E+02 0.0048 28.6 5.8 32 12-48 313-344 (455)
487 KOG2941 Beta-1,4-mannosyltrans 20.7 7.7E+02 0.017 23.8 13.4 130 272-429 252-404 (444)
488 PRK07364 2-octaprenyl-6-methox 20.7 1.1E+02 0.0025 30.0 3.8 35 6-45 14-48 (415)
489 PRK07236 hypothetical protein; 20.6 1.8E+02 0.004 28.2 5.3 32 9-45 5-36 (386)
490 PRK08293 3-hydroxybutyryl-CoA 20.6 1.1E+02 0.0025 28.4 3.6 32 11-47 4-35 (287)
491 PRK08163 salicylate hydroxylas 20.6 1.2E+02 0.0027 29.5 4.0 31 9-44 3-33 (396)
492 PRK06129 3-hydroxyacyl-CoA deh 20.6 1.1E+02 0.0023 28.9 3.4 32 11-47 3-34 (308)
493 TIGR00521 coaBC_dfp phosphopan 20.6 1.4E+02 0.0031 29.2 4.3 43 11-54 4-46 (390)
494 COG3195 Uncharacterized protei 20.4 4.3E+02 0.0093 22.3 6.2 71 367-443 88-162 (176)
495 PRK13849 putative crown gall t 20.3 1.7E+02 0.0037 26.2 4.5 38 13-50 4-42 (231)
496 smart00046 DAGKc Diacylglycero 20.3 97 0.0021 24.5 2.7 30 357-386 50-88 (124)
497 PRK06718 precorrin-2 dehydroge 20.3 1.5E+02 0.0033 25.9 4.1 31 12-47 12-42 (202)
498 cd00860 ThrRS_anticodon ThrRS 20.2 2E+02 0.0044 20.7 4.3 32 12-44 3-34 (91)
499 PRK15408 autoinducer 2-binding 20.2 6.4E+02 0.014 24.0 8.7 30 109-139 79-112 (336)
500 COG2894 MinD Septum formation 20.2 1.7E+02 0.0038 26.1 4.2 35 13-47 4-40 (272)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-68 Score=521.30 Aligned_cols=432 Identities=25% Similarity=0.385 Sum_probs=323.5
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCC--CCCCC
Q 012061 6 GFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPF--DPNSA 83 (472)
Q Consensus 6 ~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 83 (472)
+..++.||+++|+|++||++||+.||+.|+.+|+.|||++++.+.... . ...+ .+.+...+. ++...
T Consensus 3 ~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~------~~~~---~i~~~~ip~glp~~~~ 71 (451)
T PLN02410 3 EKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S------DDFT---DFQFVTIPESLPESDF 71 (451)
T ss_pred cCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c------cCCC---CeEEEeCCCCCCcccc
Confidence 344678999999999999999999999999999999999998654211 0 0011 233443332 11111
Q ss_pred CCCChHHHHHHHHH-HhHhhhhhhcC-C------CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhh
Q 012061 84 NATDPFLLRWEAIR-RSAHLLAPLLS-P------PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAI 155 (472)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~ll~-~------~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~ 155 (472)
...... .+...+. ...+.++++++ + +++|||+|. +..|+..+|+++|||++.|++++++.+..+.+++..
T Consensus 72 ~~~~~~-~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~-f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 72 KNLGPI-EFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDE-FMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred cccCHH-HHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECC-cchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 111122 2222222 23345555554 2 579999999 778999999999999999999999998877765443
Q ss_pred hhccC-CCCCCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhccc
Q 012061 156 VASKS-TSSGSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRR 234 (472)
Q Consensus 156 ~~~~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 234 (472)
..... .+.. ...++.+..+|++++++..+++.............+... ....+++++++|||+++|+.+++++++.
T Consensus 150 ~~~~~~~~~~-~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~- 226 (451)
T PLN02410 150 YANNVLAPLK-EPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQ- 226 (451)
T ss_pred HhccCCCCcc-ccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhc-
Confidence 20000 0100 000112245899988887777754322222222333222 2356789999999999999999999765
Q ss_pred ccCCCCCeeEecccCCCCc-cCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCC
Q 012061 235 VVAGLPPVYAVGPLLPCEF-EKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGK 313 (472)
Q Consensus 235 ~~p~~p~v~~vGpl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 313 (472)
..+++++|||++.... ....+++...|.+|||.+++++||||||||....+.+++.+++.+|+.++.+|||+++.+
T Consensus 227 ---~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~ 303 (451)
T PLN02410 227 ---LQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPG 303 (451)
T ss_pred ---cCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 1258999999975321 111122222389999999999999999999999999999999999999999999999852
Q ss_pred CCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHH
Q 012061 314 NVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAE 393 (472)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 393 (472)
... .++....+|++|.+++++.+ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 304 ~~~---~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~ 379 (451)
T PLN02410 304 SVR---GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNAR 379 (451)
T ss_pred ccc---ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHH
Confidence 111 11122347899999987555 55599999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 394 AVERA-GLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND---FLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 394 ~v~~~-G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
++++. |+|+.+ + ..+++++|+++|+++|.|+ +||+||+++++++++++.+||||++++++|++.+..
T Consensus 380 ~~~~~~~~G~~~------~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 380 YLECVWKIGIQV------E-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHhCeeEEe------C-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99887 999999 5 5789999999999999764 799999999999999999999999999999999864
No 2
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.2e-68 Score=522.48 Aligned_cols=437 Identities=25% Similarity=0.476 Sum_probs=333.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCC-CCCCC--C
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLV-QHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFD-PNSAN--A 85 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~ 85 (472)
++||+++|+|++||++|++.||+.|+ .+|++|||++++.+...+.+... ..+. +.+...+.+ ...++ +
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~---i~~~~lp~p~~~glp~~~ 76 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTG---VDIVGLPSPDISGLVDPS 76 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCC---ceEEECCCccccCCCCCC
Confidence 46999999999999999999999998 79999999999976443322111 0111 333333321 11222 1
Q ss_pred CChHHHHHHHHHHhHhhhhhhcC-C--CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCC
Q 012061 86 TDPFLLRWEAIRRSAHLLAPLLS-P--PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTS 162 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~-~--~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 162 (472)
.+....+...+....+.++++++ + +|+|||+|. +.+|+..+|+++|||+++|++++++.++.+.+.|... ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~-f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~--~~~~ 153 (481)
T PLN02992 77 AHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDL-FGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLD--KDIK 153 (481)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECC-cchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhc--cccc
Confidence 12222233334445567888887 4 789999999 7789999999999999999999999888777766432 1111
Q ss_pred CCCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCC--CC
Q 012061 163 SGSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAG--LP 240 (472)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~--~p 240 (472)
... ...+.++.+||+++++..+++..+..........+.+......+++++++|||++||+..+++++....... .+
T Consensus 154 ~~~-~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 154 EEH-TVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred ccc-ccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 100 011112458999888888888644333323344555555667789999999999999999998865211111 25
Q ss_pred CeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCc---
Q 012061 241 PVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDK--- 317 (472)
Q Consensus 241 ~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~--- 317 (472)
+++.|||+........ ++..|.+||+.+++++||||||||...++.+++++++.+|+.++.+|||+++.+..+.
T Consensus 233 ~v~~VGPl~~~~~~~~---~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~ 309 (481)
T PLN02992 233 PVYPIGPLCRPIQSSK---TDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACS 309 (481)
T ss_pred ceEEecCccCCcCCCc---chHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccc
Confidence 7999999976422111 2223999999999999999999999999999999999999999999999997531110
Q ss_pred -------c-hhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccch
Q 012061 318 -------E-DEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQK 389 (472)
Q Consensus 318 -------~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 389 (472)
+ ..+...+.+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 310 ~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 389 (481)
T PLN02992 310 AYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQN 389 (481)
T ss_pred ccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhH
Confidence 0 00112345889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHH-hhCeeeEEeecCCCCc--CCcCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhc--cCCChHHHHHHH
Q 012061 390 INAEAVE-RAGLGMWVRSWGWGTE--LRAKGDEIGLKIKDLMAN---DFLREQAKRIEEEARKAIG--VGGSSERTFKEL 461 (472)
Q Consensus 390 ~na~~v~-~~G~G~~l~~~~~~~~--~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~~ 461 (472)
.||++++ +.|+|+.+ +. ..++.++|.++|+++|+| +++|++|+++++++++++. +||||++++++|
T Consensus 390 ~na~~~~~~~g~gv~~------~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~ 463 (481)
T PLN02992 390 MNAALLSDELGIAVRS------DDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRV 463 (481)
T ss_pred HHHHHHHHHhCeeEEe------cCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 9999995 88999999 43 468999999999999975 4799999999999999994 599999999999
Q ss_pred HHHHHh
Q 012061 462 IDKWKC 467 (472)
Q Consensus 462 ~~~~~~ 467 (472)
++.+..
T Consensus 464 v~~~~~ 469 (481)
T PLN02992 464 TKECQR 469 (481)
T ss_pred HHHHHH
Confidence 998874
No 3
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=9.2e-68 Score=521.60 Aligned_cols=449 Identities=31% Similarity=0.552 Sum_probs=337.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEEcCCCCcc----chhhhhhhhhhcCCCccceEEeecCCCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHH----CRVTLITTYPTVSL----AETQHVSHFLSAYPQVTAKRFHLLPFDPN 81 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rG----h~Vt~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (472)
+.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.+. +... +.+.....+ .+.+...++..
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~-~~~~~~~~~---~i~~~~lp~~~- 77 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAH-VRREAASGL---DIRFHHLPAVE- 77 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHH-HhhcccCCC---CEEEEECCCCC-
Confidence 45999999999999999999999999997 79999998865431 1111 100000011 24455444321
Q ss_pred CCC-CCChH-HHHHHHHHHhHhhhhhhcC-C--CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhh
Q 012061 82 SAN-ATDPF-LLRWEAIRRSAHLLAPLLS-P--PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIV 156 (472)
Q Consensus 82 ~~~-~~~~~-~~~~~~~~~~~~~~~~ll~-~--~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 156 (472)
.+ +.+.. ..+........+.++++++ + +++|||+|. +..|+..+|+++|||++.|++++++.++.+.+++...
T Consensus 78 -~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~-f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 78 -PPTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDF-FCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -CCCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECC-cchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 11 11122 2222244445667888888 5 569999999 7789999999999999999999999999888876543
Q ss_pred hccCCCCCCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhccccc
Q 012061 157 ASKSTSSGSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVV 236 (472)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 236 (472)
........... .++.+||+++++..+++.......+...+.+.....+..+++++++|||+++|+..+++++.....
T Consensus 156 --~~~~~~~~~~~-~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 232 (480)
T PLN00164 156 --EEVAVEFEEME-GAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCT 232 (480)
T ss_pred --ccccCcccccC-cceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccc
Confidence 22111100111 235689999888889987654332222334444455667899999999999999999999765211
Q ss_pred CC--CCCeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCC
Q 012061 237 AG--LPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKN 314 (472)
Q Consensus 237 p~--~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 314 (472)
++ .|+++.|||+..........+++.+|.+||+.+++++||||||||....+.+++.+++.+|+.++.+|||+++.+.
T Consensus 233 ~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~ 312 (480)
T PLN00164 233 PGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPP 312 (480)
T ss_pred ccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 22 2689999999743211111112234999999999999999999999888999999999999999999999998632
Q ss_pred CCcc---hhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhh
Q 012061 315 VDKE---DEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKIN 391 (472)
Q Consensus 315 ~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~n 391 (472)
..+. ..+.....+|++|.+++++.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 313 ~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (480)
T PLN00164 313 AAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392 (480)
T ss_pred ccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhH
Confidence 1100 0112234588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 392 AEAVE-RAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND-----FLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 392 a~~v~-~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
|++++ +.|+|+.++.+++ +.+.+++++|.++|+++|.|+ ++|+||+++++++++++.+||||++++++|++++
T Consensus 393 a~~~~~~~gvG~~~~~~~~-~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~ 471 (480)
T PLN00164 393 AFELVADMGVAVAMKVDRK-RDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREI 471 (480)
T ss_pred HHHHHHHhCeEEEeccccc-cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99875 5799999843211 123479999999999999653 4899999999999999999999999999999999
Q ss_pred Hhcc
Q 012061 466 KCNN 469 (472)
Q Consensus 466 ~~~~ 469 (472)
+..+
T Consensus 472 ~~~~ 475 (480)
T PLN00164 472 RHGA 475 (480)
T ss_pred Hhcc
Confidence 8765
No 4
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-67 Score=514.33 Aligned_cols=441 Identities=27% Similarity=0.483 Sum_probs=327.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCC-CCCCC--C
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHH--CRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPF-DPNSA--N 84 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~ 84 (472)
+.||+++|+|++||++|++.||+.|+.+| ..|||++++.+.+...+..+.......+ .+.+...+. +.... .
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~---~i~~~~lp~~~~~~~~~~ 79 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQP---FVRFIDVPELEEKPTLGG 79 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCC---CeEEEEeCCCCCCCcccc
Confidence 46999999999999999999999999998 9999999987653211111111111112 245554442 11111 1
Q ss_pred CCChHHHHHHHHHHh----HhhhhhhcC-C----CC-cEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhh
Q 012061 85 ATDPFLLRWEAIRRS----AHLLAPLLS-P----PL-SALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPA 154 (472)
Q Consensus 85 ~~~~~~~~~~~~~~~----~~~~~~ll~-~----~~-D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~ 154 (472)
..+....+...+... .+.+.++++ . +| +|||+|. +.+|+..+|+++|||+++|++++++.++.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~-~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADF-FCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECC-cchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 112222333333333 224455554 3 34 8999999 77899999999999999999999998888877764
Q ss_pred hhhccCCC-CCCCCCCCCceeCCCC-CCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhc
Q 012061 155 IVASKSTS-SGSVEFDDDFIEIPGL-PPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNG 232 (472)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 232 (472)
.. .... ... ...+.++.+||+ +++...+++..+.... . ...+.+......+++++++|||+++|++.++.++.
T Consensus 159 ~~--~~~~~~~~-~~~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 159 RH--SKDTSVFV-RNSEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred cc--ccccccCc-CCCCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 32 1100 000 001123568998 5788899987664222 1 33344444567789999999999999999988865
Q ss_pred ccccCCCCCeeEecccCCCCccCCC--C-CCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEE
Q 012061 233 RRVVAGLPPVYAVGPLLPCEFEKRD--D-PSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWV 309 (472)
Q Consensus 233 ~~~~p~~p~v~~vGpl~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~ 309 (472)
. +..|+++.|||++........ . .+...|.+||+.++++++|||||||....+.+++++++.+|+.++++|||+
T Consensus 234 ~---~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~ 310 (468)
T PLN02207 234 E---QNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWS 310 (468)
T ss_pred c---cCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 2 346889999999753321110 0 011239999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccch
Q 012061 310 VKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQK 389 (472)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 389 (472)
++.+... ..+.+|++|.+++++.+ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 311 ~r~~~~~------~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 311 LRTEEVT------NDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred EeCCCcc------ccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccch
Confidence 9852110 11358889988887554 6669999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHh-hCeeeEEeec-CCCCcCCcCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 390 INAEAVER-AGLGMWVRSW-GWGTELRAKGDEIGLKIKDLMA--NDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 390 ~na~~v~~-~G~G~~l~~~-~~~~~~~~~~~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
.||+++++ .|+|+.+... ..+....++.++|.++|+++|+ +++||+||+++++++++++.+||||++++++|++++
T Consensus 384 ~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~ 463 (468)
T PLN02207 384 LNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDV 463 (468)
T ss_pred hhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99998777 7999987321 0001234699999999999997 689999999999999999999999999999999998
Q ss_pred Hhcc
Q 012061 466 KCNN 469 (472)
Q Consensus 466 ~~~~ 469 (472)
....
T Consensus 464 ~~~~ 467 (468)
T PLN02207 464 IGIK 467 (468)
T ss_pred Hhcc
Confidence 8543
No 5
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.9e-67 Score=510.90 Aligned_cols=444 Identities=27% Similarity=0.473 Sum_probs=335.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEEcCCCCccch-hhhhhhhhhcCCCccceEEeecCCCC-CCC-C-
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQH-HCRVTLITTYPTVSLAE-TQHVSHFLSAYPQVTAKRFHLLPFDP-NSA-N- 84 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~- 84 (472)
+.||+++|+|++||++|++.||+.|+.+ |..|||+++........ +....... ..+ .+.+...+... +.+ +
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~---~i~~~~lp~~~~~~l~~~ 78 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ART---TCQITEIPSVDVDNLVEP 78 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCC---ceEEEECCCCccccCCCC
Confidence 3499999999999999999999999987 99999999886543321 11111100 011 24444444321 122 1
Q ss_pred CCChHHHHHHHHHHhHhhhhhhcC-C--CCcEEEEcCCChhhhHHHHHhcCCC-eEEEeCccHHHHHHHhhhhhhhhccC
Q 012061 85 ATDPFLLRWEAIRRSAHLLAPLLS-P--PLSALITDVTLISAVLPVTINLHLP-NYVLFTASAKMFSLTASFPAIVASKS 160 (472)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~ll~-~--~~D~vI~D~~~~~~~~~vA~~lgIP-~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (472)
+.+....+...+....+.++++|+ + +++|||+|. +.+|+..+|+++||| +++|++++++.++.+.|+|... ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~-f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~--~~ 155 (470)
T PLN03015 79 DATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDF-FGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD--TV 155 (470)
T ss_pred CccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcC-CcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh--cc
Confidence 113333455566666778889888 5 789999999 778999999999999 5888888888777777776533 22
Q ss_pred CCCCCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccC--C
Q 012061 161 TSSGSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVA--G 238 (472)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p--~ 238 (472)
...+.... +.++.+||+++++..+++..+.+........+.+......+++++++|||++||+..++.++...... .
T Consensus 156 ~~~~~~~~-~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~ 234 (470)
T PLN03015 156 VEGEYVDI-KEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVM 234 (470)
T ss_pred cccccCCC-CCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccccccc
Confidence 11110001 12356899998998998865533222223344455556788999999999999999999987631000 0
Q ss_pred CCCeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCC--
Q 012061 239 LPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVD-- 316 (472)
Q Consensus 239 ~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-- 316 (472)
.++++.|||+..........++ |.+|||.+++++||||||||....+.+++.+++.+|+.++.+|||+++.+...
T Consensus 235 ~~~v~~VGPl~~~~~~~~~~~~---~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~ 311 (470)
T PLN03015 235 KVPVYPIGPIVRTNVHVEKRNS---IFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLG 311 (470)
T ss_pred CCceEEecCCCCCcccccchHH---HHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccc
Confidence 2569999999853221111223 99999999999999999999999999999999999999999999999752210
Q ss_pred --cchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHH
Q 012061 317 --KEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEA 394 (472)
Q Consensus 317 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 394 (472)
..+.++..+.+|++|.+++++.++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++
T Consensus 312 ~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~ 391 (470)
T PLN03015 312 ASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATL 391 (470)
T ss_pred cccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHH
Confidence 001112334689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 395 V-ERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA-----NDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 395 v-~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~-----~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+ +..|+|+.+.+. .....++.++|+++|+++|. .+++|+||+++++++++++++||||++++++|++.+.
T Consensus 392 ~~~~~gvg~~~~~~--~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 392 LTEEIGVAVRTSEL--PSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHhCeeEEeccc--ccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 8 566999999310 01236899999999999994 2579999999999999999999999999999998763
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.4e-67 Score=512.94 Aligned_cols=442 Identities=28% Similarity=0.413 Sum_probs=330.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCC-CCCC--
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFD-PNSA-- 83 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 83 (472)
..+++||+++|+|++||++||+.||+.|+.+|+.|||++++.+...+++.. ...+. +.+...+++ ...+
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~-----~~~~~---i~~~~lp~P~~~~lPd 77 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL-----SKHPS---IETLVLPFPSHPSIPS 77 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc-----ccCCC---eeEEeCCCCCcCCCCC
Confidence 345689999999999999999999999999999999999997765443221 01122 222222211 0111
Q ss_pred --CCCC-----hHHHHHHHHHHhHhhhhhhcC-C--CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhh
Q 012061 84 --NATD-----PFLLRWEAIRRSAHLLAPLLS-P--PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFP 153 (472)
Q Consensus 84 --~~~~-----~~~~~~~~~~~~~~~~~~ll~-~--~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p 153 (472)
+..+ ....+........+.+.++++ . +++|||+|. +.+|+..+|+++|||+++|++++++.++.+.+++
T Consensus 78 G~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~-f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~ 156 (477)
T PLN02863 78 GVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDM-FLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLW 156 (477)
T ss_pred CCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcC-chHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHh
Confidence 1111 111223333334455666666 3 679999999 8889999999999999999999999999887765
Q ss_pred hhhhccCCCCCCCCCCCCceeCCCCCCCCCCCCCCCccC--CchhHHHHHHHhcccccccceEEEcccccccHHHHHHHh
Q 012061 154 AIVASKSTSSGSVEFDDDFIEIPGLPPIPLSSVPPAVMD--SKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALN 231 (472)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 231 (472)
...+.......... .-.+..+||+++++..+++.++.. ..+.....+.+.......++++++|||+++|+.++++++
T Consensus 157 ~~~~~~~~~~~~~~-~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 235 (477)
T PLN02863 157 REMPTKINPDDQNE-ILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLK 235 (477)
T ss_pred hccccccccccccc-ccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHH
Confidence 32200000000000 000124788888888888865532 122233444444444567889999999999999999997
Q ss_pred cccccCCCCCeeEecccCCCCccC--------CCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Q 012061 232 GRRVVAGLPPVYAVGPLLPCEFEK--------RDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSG 303 (472)
Q Consensus 232 ~~~~~p~~p~v~~vGpl~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~ 303 (472)
.. -+.++++.|||+.+..... ....+.++|.+||+.+++++||||||||+...+.+++.+++.+|+.++
T Consensus 236 ~~---~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~ 312 (477)
T PLN02863 236 KE---LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSG 312 (477)
T ss_pred hh---cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCC
Confidence 65 1126799999997532100 000012239999999999999999999999889999999999999999
Q ss_pred CceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecC
Q 012061 304 CRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWP 383 (472)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 383 (472)
.+|||+++.+.... .. ...+|++|.++++..|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 313 ~~flw~~~~~~~~~---~~-~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 313 VHFIWCVKEPVNEE---SD-YSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred CcEEEEECCCcccc---cc-hhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 99999998521110 01 124788999999889999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHh-hCeeeEEeecCCCCcCCcCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhccCCChHHHHHHH
Q 012061 384 HFGDQKINAEAVER-AGLGMWVRSWGWGTELRAKGDEIGLKIKDLM-ANDFLREQAKRIEEEARKAIGVGGSSERTFKEL 461 (472)
Q Consensus 384 ~~~DQ~~na~~v~~-~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 461 (472)
+++||+.||+++++ .|+|+.+.+. +...++.+++.++|+++| ++++||+||+++++++++++++||||++++++|
T Consensus 389 ~~~DQ~~na~~v~~~~gvG~~~~~~---~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~ 465 (477)
T PLN02863 389 MAADQFVNASLLVDELKVAVRVCEG---ADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGF 465 (477)
T ss_pred ccccchhhHHHHHHhhceeEEeccC---CCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99999999999765 6999998431 123468999999999999 689999999999999999999999999999999
Q ss_pred HHHHHhc
Q 012061 462 IDKWKCN 468 (472)
Q Consensus 462 ~~~~~~~ 468 (472)
++.+++.
T Consensus 466 v~~i~~~ 472 (477)
T PLN02863 466 VKHVVEL 472 (477)
T ss_pred HHHHHHh
Confidence 9999753
No 7
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-67 Score=510.14 Aligned_cols=431 Identities=31% Similarity=0.540 Sum_probs=320.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEEcCCCC--ccchhhhhhhhhhcCCCccceEEeecCCCC--CCC-
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHH--CRVTLITTYPTV--SLAETQHVSHFLSAYPQVTAKRFHLLPFDP--NSA- 83 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rG--h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 83 (472)
-||+++|+|++||++||+.||+.|+.+| +.||++...... ....+ .........+ .+.+...++.. ...
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~-~~~~~~~~~~---~i~~~~lp~~~~~~~~~ 79 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTAT-YISSVSSSFP---SITFHHLPAVTPYSSSS 79 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhh-hhccccCCCC---CeEEEEcCCCCCCCCcc
Confidence 3999999999999999999999999998 566664443322 11111 0111111122 24444444321 111
Q ss_pred CCC-ChHHHHHHHHHHhHhhhhhhcC-C----CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhh
Q 012061 84 NAT-DPFLLRWEAIRRSAHLLAPLLS-P----PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVA 157 (472)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~ll~-~----~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 157 (472)
... +....+........+.+.++++ + +++|||+|. +.+|+..+|+++|||+++|++++++.++.+.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~-~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~- 157 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDF-FCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID- 157 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECC-cchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc-
Confidence 111 1112333333445556666666 4 359999999 7789999999999999999999999999888766432
Q ss_pred ccCCCCCCCCCCC-CceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhccccc
Q 012061 158 SKSTSSGSVEFDD-DFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVV 236 (472)
Q Consensus 158 ~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 236 (472)
...+.. ...+ .++.+||+++++..+++..+........+.+........+++++++|||+++|+..++.++...
T Consensus 158 -~~~~~~--~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~-- 232 (451)
T PLN03004 158 -ETTPGK--NLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL-- 232 (451)
T ss_pred -cccccc--ccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC--
Confidence 211110 0111 2256899998888999976653333334555555566778899999999999999999986540
Q ss_pred CCCCCeeEecccCCCCc-cCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCC
Q 012061 237 AGLPPVYAVGPLLPCEF-EKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNV 315 (472)
Q Consensus 237 p~~p~v~~vGpl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 315 (472)
..++++.|||+..... ......++..|.+|||.+++++||||||||....+.+++++++.+|+.++.+|||+++.+..
T Consensus 233 -~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~ 311 (451)
T PLN03004 233 -CFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE 311 (451)
T ss_pred -CCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 1257999999975321 10101112239999999999999999999999999999999999999999999999985311
Q ss_pred CcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHH
Q 012061 316 DKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAV 395 (472)
Q Consensus 316 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 395 (472)
...+.......+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++
T Consensus 312 ~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~ 391 (451)
T PLN03004 312 LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMI 391 (451)
T ss_pred ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHH
Confidence 10100012234889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHH
Q 012061 396 ER-AGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSER 456 (472)
Q Consensus 396 ~~-~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 456 (472)
++ .|+|+.++.. +.+.+++++|+++|+++|+|++||+||++++++.++++++||||++
T Consensus 392 ~~~~g~g~~l~~~---~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 392 VDEIKIAISMNES---ETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHhCceEEecCC---cCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 86 5999999320 1235799999999999999999999999999999999999999874
No 8
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.1e-67 Score=517.10 Aligned_cols=442 Identities=29% Similarity=0.513 Sum_probs=327.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEEcCCCCccch--hhhhhhhhhc-CCCccceEEeecCCCCCCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHH--CRVTLITTYPTVSLAE--TQHVSHFLSA-YPQVTAKRFHLLPFDPNSAN 84 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rG--h~Vt~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (472)
|+||+++|+|++||++||+.||+.|+.+| ..|||++++.+..... +......... .+ .+++...+++...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~lp~~~~~-- 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSED---RLRYEVISAGDQP-- 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCC---CeEEEEcCCCCCC--
Confidence 67999999999999999999999999998 8899999987654221 1111111100 11 2455555443211
Q ss_pred CCChHHHHHHHHHHhHh----hhhhhcC-C-----CC-cEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhh
Q 012061 85 ATDPFLLRWEAIRRSAH----LLAPLLS-P-----PL-SALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFP 153 (472)
Q Consensus 85 ~~~~~~~~~~~~~~~~~----~~~~ll~-~-----~~-D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p 153 (472)
.... ..+...+....+ .+++++. . +| +|||+|. +..|+..+|+++|||+++|++++++.++.+.+++
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~-f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 77 TTED-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDM-FCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred cccc-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECC-cchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 1111 122223333333 3344432 1 23 8999999 7789999999999999999999999999988876
Q ss_pred hhhhccC--CCC-CCCCCCCCceeCCCCC-CCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHH
Q 012061 154 AIVASKS--TSS-GSVEFDDDFIEIPGLP-PIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVA 229 (472)
Q Consensus 154 ~~~~~~~--~~~-~~~~~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 229 (472)
... .. ... ... ..+.++.+|+++ +++..+++..+.. ..+...+.+......+++++++|++.++|..++..
T Consensus 155 ~~~--~~~~~~~~~~~-~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 155 MLY--DEKKYDVSELE-DSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhc--cccccCccccC-CCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 543 21 110 000 011235689985 7888888875542 23344555556677889999999999999999988
Q ss_pred HhcccccCCCCCeeEecccCCCCcc-----CCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Q 012061 230 LNGRRVVAGLPPVYAVGPLLPCEFE-----KRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGC 304 (472)
Q Consensus 230 ~~~~~~~p~~p~v~~vGpl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 304 (472)
+.+.+ +..|+++.|||+...... ...+++ |.+||+.+++++||||||||+...+.+++++++.+|+.++.
T Consensus 230 l~~~~--~~~~~v~~vGpl~~~~~~~~~~~~~~~~~---~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 230 FSGSS--GDLPPVYPVGPVLHLENSGDDSKDEKQSE---ILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred HHhcc--cCCCCEEEeCCCccccccccccccccchH---HHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 87631 135789999999432211 111234 99999999988999999999988899999999999999999
Q ss_pred ceEEEEeCCCCC-----cchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcE
Q 012061 305 RFLWVVKGKNVD-----KEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPL 379 (472)
Q Consensus 305 ~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~ 379 (472)
+|||+++.+... ..........+|++|.+++++. +++.+|+||.+||+|++|++|||||||||++||+++||||
T Consensus 305 ~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~ 383 (481)
T PLN02554 305 RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDI-GKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPM 383 (481)
T ss_pred CeEEEEcCCcccccccccccccchhhhCChHHHHHhccC-ceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCE
Confidence 999999752110 0000011234688998888644 4666999999999999999999999999999999999999
Q ss_pred EecCCcccchhhHH-HHHhhCeeeEEeecCC-----CCcCCcCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhccCC
Q 012061 380 LVWPHFGDQKINAE-AVERAGLGMWVRSWGW-----GTELRAKGDEIGLKIKDLMA-NDFLREQAKRIEEEARKAIGVGG 452 (472)
Q Consensus 380 l~~P~~~DQ~~na~-~v~~~G~G~~l~~~~~-----~~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~g 452 (472)
|++|+++||+.||+ ++++.|+|+.++++.+ ++...+++++|.++|+++|+ |++||+||+++++++++++++||
T Consensus 384 l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gG 463 (481)
T PLN02554 384 AAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGG 463 (481)
T ss_pred EecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999995 5788899999953110 11246899999999999996 89999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcc
Q 012061 453 SSERTFKELIDKWKCNN 469 (472)
Q Consensus 453 ~~~~~~~~~~~~~~~~~ 469 (472)
|+++++++|++++++|.
T Consensus 464 ss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 464 SSHTALKKFIQDVTKNI 480 (481)
T ss_pred hHHHHHHHHHHHHHhhC
Confidence 99999999999999875
No 9
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-66 Score=509.69 Aligned_cols=430 Identities=23% Similarity=0.325 Sum_probs=324.4
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCC
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATD 87 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (472)
..+.||+++|+|++||++|++.||+.|+.+|++||+++++.+.+.+++. . ...+ .+.+...+....+....+
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~-~----~~~~---~i~~v~lp~g~~~~~~~~ 75 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISAT-L----DPKL---GITFMSISDGQDDDPPRD 75 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhc-c----CCCC---CEEEEECCCCCCCCcccc
Confidence 3456999999999999999999999999999999999998765444322 0 0011 234444443211111112
Q ss_pred hHHHHHHHHH-HhHhhhhhhcC-C----CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCC
Q 012061 88 PFLLRWEAIR-RSAHLLAPLLS-P----PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKST 161 (472)
Q Consensus 88 ~~~~~~~~~~-~~~~~~~~ll~-~----~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (472)
+..+...+. ...+.+.++++ + +++|||+|. +.+|+..+|+++|||+++|++++++.++.+.+++........
T Consensus 76 -~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~-~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 76 -FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDL-LASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred -HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECC-ccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 223333333 34557777777 4 247999999 888999999999999999999999888877766543210001
Q ss_pred CCCCCCCCCCce-eCCCCCCCCCCCCCCCccCC--chhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCC
Q 012061 162 SSGSVEFDDDFI-EIPGLPPIPLSSVPPAVMDS--KSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAG 238 (472)
Q Consensus 162 ~~~~~~~~~~~~-~~p~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~ 238 (472)
..........++ .+|++++++..+++.++... .....+.+.+..+...+++++++|||+++|+..++.+.....+|.
T Consensus 154 ~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 233 (448)
T PLN02562 154 SETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQ 233 (448)
T ss_pred ccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcccc
Confidence 100000001112 47899888888888765322 223345556666677789999999999999998887765433455
Q ss_pred CCCeeEecccCCCCcc---CCC-CCCccchhhhccCCCCCceEEEeecccc-cCCHHHHHHHHHHHHhCCCceEEEEeCC
Q 012061 239 LPPVYAVGPLLPCEFE---KRD-DPSTSLILKWLDDQPEGSVVYVSFGSRL-ALSMEQTKELGDGLLSSGCRFLWVVKGK 313 (472)
Q Consensus 239 ~p~v~~vGpl~~~~~~---~~~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~~~~~~~~ 313 (472)
.|+++.|||++..... ... .+++.+|.+||+.++++++|||||||.. ..+.+++++++.+|++++.+|||+++.+
T Consensus 234 ~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 234 NPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred CCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 6789999999764321 110 0112238899999999999999999985 6789999999999999999999999751
Q ss_pred CCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHH
Q 012061 314 NVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAE 393 (472)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 393 (472)
. . ..+|++|.++.. +|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||+
T Consensus 314 ~---~------~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 383 (448)
T PLN02562 314 W---R------EGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCA 383 (448)
T ss_pred c---h------hhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHH
Confidence 0 0 236778888775 56677799999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 394 AVERA-GLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 394 ~v~~~-G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
++++. |+|+.+ + ++++++|.++|+++|+|++||+||++++++++++ ..||||++++++|+++++
T Consensus 384 ~~~~~~g~g~~~------~--~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 384 YIVDVWKIGVRI------S--GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHhCceeEe------C--CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99875 999888 3 4789999999999999999999999999999887 778999999999999874
No 10
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-66 Score=508.58 Aligned_cols=448 Identities=27% Similarity=0.395 Sum_probs=331.1
Q ss_pred CCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhh-h-hhhhhcCCCccceEEeecCCC-CC
Q 012061 5 GGFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQH-V-SHFLSAYPQVTAKRFHLLPFD-PN 81 (472)
Q Consensus 5 ~~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~ 81 (472)
.+.+.+.||+++|+|++||++||+.||+.|+.+|..|||++++.+...+.+.. . +.. ........+.+...+.. ++
T Consensus 2 ~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~-~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 2 ESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGV-LKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccc-cccCCCCeEEEeeCCCCCCC
Confidence 45566789999999999999999999999999999999999997655443210 0 000 00001112334422210 01
Q ss_pred CCCCCChHHHHHHHHH-HhHhhhhhhcC-C----CC-cEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhh
Q 012061 82 SANATDPFLLRWEAIR-RSAHLLAPLLS-P----PL-SALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPA 154 (472)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~ll~-~----~~-D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~ 154 (472)
+......+..+...+. ...+.++++|+ + +| +|||+|. +..|+..+|+++|||+++|++++++.++.+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~-~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 81 DDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNP-FIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred CcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECC-cchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 1111112222333332 34456666666 3 34 9999999 77899999999999999999999999988777643
Q ss_pred hhhccCCCCCCCCCCCCceeCCCCCCCCCCCCCCCccC--CchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhc
Q 012061 155 IVASKSTSSGSVEFDDDFIEIPGLPPIPLSSVPPAVMD--SKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNG 232 (472)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 232 (472)
.. ...... ...+.++.+||+|+++..+++.++.. ......+.+.+......+++++++|||++||+.+++.++.
T Consensus 160 ~~--~~~~~~--~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 235 (480)
T PLN02555 160 GL--VPFPTE--TEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSK 235 (480)
T ss_pred cC--CCcccc--cCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhh
Confidence 21 011110 00112356899998888899876542 2233345555556667789999999999999999998865
Q ss_pred ccccCCCCCeeEecccCCCCcc--C---CC-CCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCce
Q 012061 233 RRVVAGLPPVYAVGPLLPCEFE--K---RD-DPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRF 306 (472)
Q Consensus 233 ~~~~p~~p~v~~vGpl~~~~~~--~---~~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 306 (472)
. .| ++.|||+...... . .. .+....|.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|
T Consensus 236 ~-----~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~f 309 (480)
T PLN02555 236 L-----CP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSF 309 (480)
T ss_pred C-----CC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeE
Confidence 4 34 9999999753211 0 00 0112239999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcc
Q 012061 307 LWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFG 386 (472)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 386 (472)
||+++........ -...+|++|.++++ +|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++
T Consensus 310 lW~~~~~~~~~~~---~~~~lp~~~~~~~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~ 385 (480)
T PLN02555 310 LWVMRPPHKDSGV---EPHVLPEEFLEKAG-DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWG 385 (480)
T ss_pred EEEEecCcccccc---hhhcCChhhhhhcC-CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCcc
Confidence 9999742110000 01247788887775 4557779999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhh-CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 012061 387 DQKINAEAVERA-GLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN---DFLREQAKRIEEEARKAIGVGGSSERTFKELI 462 (472)
Q Consensus 387 DQ~~na~~v~~~-G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (472)
||+.||+++++. |+|+.+.+.+ +....++.++|.++|+++|++ +++|+||++|++++++++++||||++++++||
T Consensus 386 DQ~~Na~~~~~~~gvGv~l~~~~-~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v 464 (480)
T PLN02555 386 DQVTDAVYLVDVFKTGVRLCRGE-AENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFV 464 (480)
T ss_pred ccHHHHHHHHHHhCceEEccCCc-cccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999887 9999994210 013468999999999999964 47999999999999999999999999999999
Q ss_pred HHHHhcc
Q 012061 463 DKWKCNN 469 (472)
Q Consensus 463 ~~~~~~~ 469 (472)
+++.+.+
T Consensus 465 ~~i~~~~ 471 (480)
T PLN02555 465 DKLVRKS 471 (480)
T ss_pred HHHHhcc
Confidence 9998764
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-66 Score=505.08 Aligned_cols=416 Identities=26% Similarity=0.413 Sum_probs=319.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCC--CCCCCCCC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPF--DPNSANAT 86 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 86 (472)
++.||+++|+|++||++||+.||+.|+.+|+.|||++++.+.+.+... ..+ .+.+...+. ++......
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~---~i~~~~ipdglp~~~~~~~ 73 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSS---PISIATISDGYDQGGFSSA 73 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCC---CEEEEEcCCCCCCcccccc
Confidence 456999999999999999999999999999999999998754433211 011 133443332 11011111
Q ss_pred ChHHHHHHHHH-HhHhhhhhhcC-C----CC-cEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhcc
Q 012061 87 DPFLLRWEAIR-RSAHLLAPLLS-P----PL-SALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASK 159 (472)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~ll~-~----~~-D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 159 (472)
+....+...+. ...+.++++|+ + +| +|||+|. +.+|+..+|+++|||++.|++++++.+..+.+. ... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~-f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~--~ 149 (449)
T PLN02173 74 GSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDS-FMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YIN--N 149 (449)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECC-cchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhc--c
Confidence 12223333333 44557777776 4 45 9999999 888999999999999999999988877554431 111 0
Q ss_pred CCCCCCCCCCCCceeCCCCCCCCCCCCCCCccC--CchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccC
Q 012061 160 STSSGSVEFDDDFIEIPGLPPIPLSSVPPAVMD--SKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVA 237 (472)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p 237 (472)
++..+.+|++++++..+++.++.. ........+.+......+++++++|||+++|+.++++++..
T Consensus 150 ---------~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---- 216 (449)
T PLN02173 150 ---------GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---- 216 (449)
T ss_pred ---------CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc----
Confidence 111145889988888888876642 12223444555566677899999999999999999988543
Q ss_pred CCCCeeEecccCCCC-------ccCC----C-C-CCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Q 012061 238 GLPPVYAVGPLLPCE-------FEKR----D-D-PSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGC 304 (472)
Q Consensus 238 ~~p~v~~vGpl~~~~-------~~~~----~-~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 304 (472)
++++.|||+++.. .... . . ++.+.|.+||+.++++++|||||||....+.+++.+++.+| .+.
T Consensus 217 --~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 --CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred --CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 4699999997421 0000 0 0 12234999999999999999999999989999999999999 677
Q ss_pred ceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCC
Q 012061 305 RFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPH 384 (472)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 384 (472)
+|+|+++.+ . ...+|++|.+++..+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 293 ~flWvvr~~-----~----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~ 363 (449)
T PLN02173 293 SYLWVVRAS-----E----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQ 363 (449)
T ss_pred CEEEEEecc-----c----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCc
Confidence 899999751 1 1247888988887788898899999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhh-CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhccCCChHHHHHH
Q 012061 385 FGDQKINAEAVERA-GLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN---DFLREQAKRIEEEARKAIGVGGSSERTFKE 460 (472)
Q Consensus 385 ~~DQ~~na~~v~~~-G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 460 (472)
++||+.||+++++. |+|+.+.+.. ....++.++|.++|+++|+| +++|+||+++++++++++++||||++++++
T Consensus 364 ~~DQ~~Na~~v~~~~g~Gv~v~~~~--~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~ 441 (449)
T PLN02173 364 WTDQPMNAKYIQDVWKVGVRVKAEK--ESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININT 441 (449)
T ss_pred hhcchHHHHHHHHHhCceEEEeecc--cCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999986 9999884310 11246999999999999975 468999999999999999999999999999
Q ss_pred HHHHHH
Q 012061 461 LIDKWK 466 (472)
Q Consensus 461 ~~~~~~ 466 (472)
|++++.
T Consensus 442 ~v~~~~ 447 (449)
T PLN02173 442 FVSKIQ 447 (449)
T ss_pred HHHHhc
Confidence 999885
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.9e-66 Score=505.09 Aligned_cols=425 Identities=27% Similarity=0.409 Sum_probs=318.2
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCC
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAAS--LVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANA 85 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (472)
.++.||+++|+|++||++|++.||+. |++||++|||++++.+++.+++.+. .+..+.+...+. .++.
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~--------~~~~~~~~~~~~---glp~ 74 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK--------PRRPVDLVFFSD---GLPK 74 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC--------CCCceEEEECCC---CCCC
Confidence 34579999999999999999999999 5699999999999977554432220 112344443332 1221
Q ss_pred C--ChHHHHHHHHH-HhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCC
Q 012061 86 T--DPFLLRWEAIR-RSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKST 161 (472)
Q Consensus 86 ~--~~~~~~~~~~~-~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (472)
. .....+...+. ...+.++++++ .++||||+|. +.+|+..+|+++|||+++|++.++..+..+.+++... ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~-~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~ 151 (456)
T PLN02210 75 DDPRAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSP-FTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSF 151 (456)
T ss_pred CcccCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECC-cchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCC
Confidence 1 11122222332 34556778888 8899999999 7779999999999999999999998887766553211 111
Q ss_pred CCCCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHH-HHhcccccccceEEEcccccccHHHHHHHhcccccCCCC
Q 012061 162 SSGSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSF-LENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLP 240 (472)
Q Consensus 162 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p 240 (472)
... ...+.++.+|+++++...+++..+........... .+.......++++++|||+++|+..++.+++. +
T Consensus 152 ~~~--~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~------~ 223 (456)
T PLN02210 152 PDL--EDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL------K 223 (456)
T ss_pred Ccc--cccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc------C
Confidence 110 00011245899988888888875543322222222 23333456788999999999999999987643 5
Q ss_pred CeeEecccCCC----C-ccC--C-----CCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEE
Q 012061 241 PVYAVGPLLPC----E-FEK--R-----DDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLW 308 (472)
Q Consensus 241 ~v~~vGpl~~~----~-~~~--~-----~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~ 308 (472)
++++|||+.+. . ... . ..+++..|.+||+.++++++|||||||....+.+++++++.+|+.++.+|||
T Consensus 224 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw 303 (456)
T PLN02210 224 PVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLW 303 (456)
T ss_pred CEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 79999999742 1 100 0 0012234899999999999999999999888999999999999999999999
Q ss_pred EEeCCCCCcchhHHHHhhhhHHHHHHhh-cCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCccc
Q 012061 309 VVKGKNVDKEDEESLKNVLGHELMEKIK-DQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGD 387 (472)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 387 (472)
+++.... . ..+.++.++.. +.+ ++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++|
T Consensus 304 ~~~~~~~-~--------~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~D 373 (456)
T PLN02210 304 VIRPKEK-A--------QNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTD 373 (456)
T ss_pred EEeCCcc-c--------cchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccc
Confidence 9975210 0 12244555553 344 56699999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHh-hCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 388 QKINAEAVER-AGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND---FLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 388 Q~~na~~v~~-~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
|+.||+++++ .|+|+.+++.+ ..+.+++++|+++|+++|.|+ ++|+||++|++.+++++++||||++++++|++
T Consensus 374 Q~~na~~~~~~~g~G~~l~~~~--~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~ 451 (456)
T PLN02210 374 QPIDARLLVDVFGIGVRMRNDA--VDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFIS 451 (456)
T ss_pred cHHHHHHHHHHhCeEEEEeccc--cCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999998 79999994310 123689999999999999765 49999999999999999999999999999999
Q ss_pred HHH
Q 012061 464 KWK 466 (472)
Q Consensus 464 ~~~ 466 (472)
.++
T Consensus 452 ~~~ 454 (456)
T PLN02210 452 DIT 454 (456)
T ss_pred HHh
Confidence 886
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1e-65 Score=503.99 Aligned_cols=447 Identities=28% Similarity=0.414 Sum_probs=325.5
Q ss_pred CCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCC--CC
Q 012061 5 GGFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDP--NS 82 (472)
Q Consensus 5 ~~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 82 (472)
+++.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+.- ... ..... .+.+...+++. +.
T Consensus 3 ~~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~-~~~--~~~~~-~i~~~~lp~p~~~dg 78 (491)
T PLN02534 3 VSKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTI-DRA--RESGL-PIRLVQIPFPCKEVG 78 (491)
T ss_pred cccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhh-hhc--cccCC-CeEEEEcCCCCccCC
Confidence 34556689999999999999999999999999999999999997654443211 000 00000 13344333221 12
Q ss_pred CCC-----C-----ChHHHHHHHHHHhHhhhhhhcC-C--CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHH
Q 012061 83 ANA-----T-----DPFLLRWEAIRRSAHLLAPLLS-P--PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLT 149 (472)
Q Consensus 83 ~~~-----~-----~~~~~~~~~~~~~~~~~~~ll~-~--~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~ 149 (472)
++. . +....+...+....+.+.++|+ . +++|||+|. +.+|+..+|+++|||+++|++++++.+..+
T Consensus 79 lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~-f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~ 157 (491)
T PLN02534 79 LPIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDK-CLSWTSKTAQRFNIPRIVFHGMCCFSLLSS 157 (491)
T ss_pred CCCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECC-ccHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence 221 0 1112222333334567777777 3 689999999 888999999999999999999999887765
Q ss_pred hhhhhhhhccCCCCCCCCCCCCceeCCCCCC---CCCCCCCCCccCCchhHHHHHHHhcc-cccccceEEEcccccccHH
Q 012061 150 ASFPAIVASKSTSSGSVEFDDDFIEIPGLPP---IPLSSVPPAVMDSKSLFATSFLENGN-SFVKSNGVLINSFDALEAD 225 (472)
Q Consensus 150 ~~~p~~~~~~~~~~~~~~~~~~~~~~p~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~ 225 (472)
.++.......... ..+.++.+|++++ ++..+++..+... .. ...+..... ...+++++++|||++||+.
T Consensus 158 ~~~~~~~~~~~~~-----~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (491)
T PLN02534 158 HNIRLHNAHLSVS-----SDSEPFVVPGMPQSIEITRAQLPGAFVSL-PD-LDDVRNKMREAESTAFGVVVNSFNELEHG 230 (491)
T ss_pred HHHHHhcccccCC-----CCCceeecCCCCccccccHHHCChhhcCc-cc-HHHHHHHHHhhcccCCEEEEecHHHhhHH
Confidence 4432221001011 1112356888874 6667777644221 11 122222222 2345779999999999999
Q ss_pred HHHHHhcccccCCCCCeeEecccCCCCcc---C---C--CCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHH
Q 012061 226 TLVALNGRRVVAGLPPVYAVGPLLPCEFE---K---R--DDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGD 297 (472)
Q Consensus 226 ~~~~~~~~~~~p~~p~v~~vGpl~~~~~~---~---~--~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~ 297 (472)
++++++.. ..++++.|||+...... . . ...+...|.+|||.+++++||||||||......+++.+++.
T Consensus 231 ~l~~l~~~----~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~ 306 (491)
T PLN02534 231 CAEAYEKA----IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGL 306 (491)
T ss_pred HHHHHHhh----cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHH
Confidence 99998765 12589999999742110 0 0 01012349999999999999999999999999999999999
Q ss_pred HHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCC
Q 012061 298 GLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGV 377 (472)
Q Consensus 298 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~Gv 377 (472)
+|+.++.+|||+++.+.... +. ....+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 307 gl~~~~~~flW~~r~~~~~~-~~--~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~Gv 383 (491)
T PLN02534 307 GLEASKKPFIWVIKTGEKHS-EL--EEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGV 383 (491)
T ss_pred HHHhCCCCEEEEEecCcccc-ch--hhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCC
Confidence 99999999999998521111 10 1124689999898889999999999999999999999999999999999999999
Q ss_pred cEEecCCcccchhhHHHHHhh-CeeeEEee-----cCCCCc-C-CcCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHH
Q 012061 378 PLLVWPHFGDQKINAEAVERA-GLGMWVRS-----WGWGTE-L-RAKGDEIGLKIKDLMA-----NDFLREQAKRIEEEA 444 (472)
Q Consensus 378 P~l~~P~~~DQ~~na~~v~~~-G~G~~l~~-----~~~~~~-~-~~~~~~l~~~i~~~l~-----~~~~~~~a~~l~~~~ 444 (472)
|||++|+++||+.||+++++. |+|+.+.. ++.++. + .+++++|+++|+++|. .+++|+||++|++++
T Consensus 384 P~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a 463 (491)
T PLN02534 384 PMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMA 463 (491)
T ss_pred CEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999999999998755 99988731 111011 1 4899999999999995 257999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHhccC
Q 012061 445 RKAIGVGGSSERTFKELIDKWKCNNN 470 (472)
Q Consensus 445 ~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (472)
++++.+||||++++++|++++.+.++
T Consensus 464 ~~Av~~GGSS~~nl~~fv~~i~~~~~ 489 (491)
T PLN02534 464 RKAMELGGSSHINLSILIQDVLKQQS 489 (491)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999986554
No 14
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-65 Score=507.85 Aligned_cols=446 Identities=29% Similarity=0.500 Sum_probs=321.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCC---eEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCC--
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHC---RVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSA-- 83 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh---~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 83 (472)
++.||+++|+|++||++||+.||+.|+.+|. .||++++........+..+.......+ .+.+...++....-
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~---~i~~~~lp~~~~p~~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEP---RIRLVTLPEVQDPPPM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCC---CeEEEECCCCCCCccc
Confidence 4569999999999999999999999999994 566666554322111111111111112 24555555422110
Q ss_pred C--CCChHHHHHHHHHHhHhhhhhhcC-C----------CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHh
Q 012061 84 N--ATDPFLLRWEAIRRSAHLLAPLLS-P----------PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTA 150 (472)
Q Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~ll~-~----------~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~ 150 (472)
. .......+...+....+.++++++ + +++|||+|. +.+|+..+|+++|||+++|++++++.++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~-f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDF-FCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECC-ccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 0 011112333344444444444443 2 249999999 7789999999999999999999999988887
Q ss_pred hhhhhhhccCCCCCCCC-CCCCceeCCCCC-CCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHH
Q 012061 151 SFPAIVASKSTSSGSVE-FDDDFIEIPGLP-PIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLV 228 (472)
Q Consensus 151 ~~p~~~~~~~~~~~~~~-~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 228 (472)
+++... .....+... ..+.++.+||++ +++..+++..+.... ....+.....+..+++++++|||+++|+.+++
T Consensus 158 ~~~~~~--~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 158 YLPERH--RKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HHHHhc--cccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 776432 111100000 111235689984 677788876443221 12334455556678999999999999999999
Q ss_pred HHhcccccCCCCCeeEecccCCCCcc--CCCC-CCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Q 012061 229 ALNGRRVVAGLPPVYAVGPLLPCEFE--KRDD-PSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCR 305 (472)
Q Consensus 229 ~~~~~~~~p~~p~v~~vGpl~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 305 (472)
+++.. ....|++++|||+...... ...+ .+...|.+||+.++++++|||||||+...+.+++.+++.+|+.++.+
T Consensus 234 ~l~~~--~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 234 YFSRL--PENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred HHHhh--cccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 88643 1124789999999763221 1111 11233999999999999999999999888999999999999999999
Q ss_pred eEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc
Q 012061 306 FLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF 385 (472)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 385 (472)
|||+++.+... .. .....+|++|.+++++.+ ++.+|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 312 flw~~~~~~~~--~~-~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 312 FLWSIRTNPAE--YA-SPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred EEEEEecCccc--cc-chhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99999853111 00 011347899999987666 455999999999999999999999999999999999999999999
Q ss_pred ccchhhHHH-HHhhCeeeEEeecCC-CCcCCcCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 012061 386 GDQKINAEA-VERAGLGMWVRSWGW-GTELRAKGDEIGLKIKDLMAND-FLREQAKRIEEEARKAIGVGGSSERTFKELI 462 (472)
Q Consensus 386 ~DQ~~na~~-v~~~G~G~~l~~~~~-~~~~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (472)
+||+.||++ +++.|+|+.+++..+ ++...+++++|+++|+++|+++ +||+||+++++++++++++||||++++++|+
T Consensus 388 ~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v 467 (475)
T PLN02167 388 AEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFI 467 (475)
T ss_pred ccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999986 677899999843110 0123579999999999999754 8999999999999999999999999999999
Q ss_pred HHHHhc
Q 012061 463 DKWKCN 468 (472)
Q Consensus 463 ~~~~~~ 468 (472)
++++..
T Consensus 468 ~~i~~~ 473 (475)
T PLN02167 468 DDLLGD 473 (475)
T ss_pred HHHHhc
Confidence 998754
No 15
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=8.7e-66 Score=501.00 Aligned_cols=415 Identities=20% Similarity=0.292 Sum_probs=312.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCC-CCCCCC--
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFD-PNSANA-- 85 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 85 (472)
.++||+++|+|++||++|++.||+.|+++||+|||++++.+...+++.+. .+. .+.+...+.+ .+.++.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a------~~~--~i~~~~l~~p~~dgLp~g~ 74 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL------FPD--SIVFHPLTIPPVNGLPAGA 74 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC------CCC--ceEEEEeCCCCccCCCCCc
Confidence 46899999999999999999999999999999999998876555443321 110 1223322221 112221
Q ss_pred --CChH-----HHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhh
Q 012061 86 --TDPF-----LLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVA 157 (472)
Q Consensus 86 --~~~~-----~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 157 (472)
.+.+ ..+...+....+.++++++ +++||||+|. + .|+..+|+++|||+++|++++++.+. +.+++...
T Consensus 75 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D~-~-~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~- 150 (442)
T PLN02208 75 ETTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFDF-A-QWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGK- 150 (442)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECC-c-HhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccc-
Confidence 1111 1123334445667888888 8999999995 5 69999999999999999999988654 44433110
Q ss_pred ccCCCCCCCCCCCCceeCCCCCC----CCCCCCCCCccCCchhHHHHHHH-hcccccccceEEEcccccccHHHHHHHhc
Q 012061 158 SKSTSSGSVEFDDDFIEIPGLPP----IPLSSVPPAVMDSKSLFATSFLE-NGNSFVKSNGVLINSFDALEADTLVALNG 232 (472)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~l~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 232 (472)
.. ..+|++|+ ++..+++.+ . ........+.. ......+++++++|||+++|+.+++++..
T Consensus 151 ----------~~---~~~pglp~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~ 215 (442)
T PLN02208 151 ----------LG---VPPPGYPSSKVLFRENDAHAL-A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISR 215 (442)
T ss_pred ----------cC---CCCCCCCCcccccCHHHcCcc-c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHh
Confidence 00 12567764 344555543 1 11122333332 22456689999999999999999998865
Q ss_pred ccccCCCCCeeEecccCCCCcc-CCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEe
Q 012061 233 RRVVAGLPPVYAVGPLLPCEFE-KRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVK 311 (472)
Q Consensus 233 ~~~~p~~p~v~~vGpl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~ 311 (472)
. ..|+++.|||+...... ...+.+ |.+|||.+++++||||||||+...+.+++.+++.+|+..+.+++|+++
T Consensus 216 ~----~~~~v~~vGpl~~~~~~~~~~~~~---~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r 288 (442)
T PLN02208 216 Q----YHKKVLLTGPMFPEPDTSKPLEEQ---WSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVK 288 (442)
T ss_pred h----cCCCEEEEeecccCcCCCCCCHHH---HHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3 34789999999864321 122334 999999999999999999999988999999999999889999999998
Q ss_pred CCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhh
Q 012061 312 GKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKIN 391 (472)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~n 391 (472)
.+.... .....+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 289 ~~~~~~----~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~n 364 (442)
T PLN02208 289 PPRGSS----TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLF 364 (442)
T ss_pred CCCccc----chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHH
Confidence 631110 1123588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 392 AEAVER-AGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND-----FLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 392 a~~v~~-~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
|+++++ .|+|+.+++. +.+.+++++|.++|+++|+|+ ++|++|+++++.+. .+|||++++++|++++
T Consensus 365 a~~~~~~~g~gv~~~~~---~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 365 TRLMTEEFEVSVEVSRE---KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHHHHhceeEEeccc---cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHH
Confidence 998776 7999999321 112489999999999999754 49999999998863 3689999999999999
Q ss_pred Hhc
Q 012061 466 KCN 468 (472)
Q Consensus 466 ~~~ 468 (472)
++.
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 754
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.1e-65 Score=506.53 Aligned_cols=442 Identities=26% Similarity=0.384 Sum_probs=320.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCC--CCCC--
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDP--NSAN-- 84 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-- 84 (472)
+++||+++|+|++||++|++.||+.|++||++|||++++.+.+.+++.+. ++....+.+ .+.+...+++. ..++
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a-~~~~~~~~~-~~~~~~~~~p~~~~glP~g 81 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIE-AFKNLNPGL-EIDIQIFNFPCVELGLPEG 81 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhh-hhcccCCCC-cceEEEeeCCCCcCCCCCC
Confidence 45799999999999999999999999999999999999988776665543 221111111 11122222110 0111
Q ss_pred --CC---------Ch---HHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHH
Q 012061 85 --AT---------DP---FLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLT 149 (472)
Q Consensus 85 --~~---------~~---~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~ 149 (472)
.. +. ...+........+.++++++ .+|||||+|. +..|+..+|+++|||+++|++++++....+
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~-~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADM-FFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECC-cchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 01 01 11111222234446677777 7899999999 778999999999999999999998877665
Q ss_pred hhhhhhhhccCCCCCCCCCCCCceeCCCCCC---CCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHH
Q 012061 150 ASFPAIVASKSTSSGSVEFDDDFIEIPGLPP---IPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADT 226 (472)
Q Consensus 150 ~~~p~~~~~~~~~~~~~~~~~~~~~~p~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 226 (472)
..+....+...... ....+.+|++++ +...+++.. .....+.+.+........+++++++|+++++|+..
T Consensus 161 ~~~~~~~~~~~~~~-----~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~ 233 (482)
T PLN03007 161 YCIRVHKPQKKVAS-----SSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAY 233 (482)
T ss_pred HHHHhcccccccCC-----CCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHH
Confidence 43332110001110 011134777762 333444432 12222344444444566788999999999999998
Q ss_pred HHHHhcccccCCCCCeeEecccCCCCcc-------C-CCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHH
Q 012061 227 LVALNGRRVVAGLPPVYAVGPLLPCEFE-------K-RDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDG 298 (472)
Q Consensus 227 ~~~~~~~~~~p~~p~v~~vGpl~~~~~~-------~-~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a 298 (472)
++.+++. ..+++++|||+...... . ....+..+|.+||+.++++++|||||||+...+.+++.+++.+
T Consensus 234 ~~~~~~~----~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~ 309 (482)
T PLN03007 234 ADFYKSF----VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAG 309 (482)
T ss_pred HHHHHhc----cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHH
Confidence 8888665 12479999998643211 0 0111123399999999999999999999988889999999999
Q ss_pred HHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCc
Q 012061 299 LLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVP 378 (472)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP 378 (472)
|+.++.+|||+++...... .....+|++|.+++.+.|+++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 310 l~~~~~~flw~~~~~~~~~----~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP 385 (482)
T PLN03007 310 LEGSGQNFIWVVRKNENQG----EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLP 385 (482)
T ss_pred HHHCCCCEEEEEecCCccc----chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCC
Confidence 9999999999998631110 111247899999998899999999999999999999999999999999999999999
Q ss_pred EEecCCcccchhhHHHHHhh-CeeeEEeecC--CCCcCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhccCC
Q 012061 379 LLVWPHFGDQKINAEAVERA-GLGMWVRSWG--WGTELRAKGDEIGLKIKDLMAND---FLREQAKRIEEEARKAIGVGG 452 (472)
Q Consensus 379 ~l~~P~~~DQ~~na~~v~~~-G~G~~l~~~~--~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g 452 (472)
||++|+++||+.||+++++. ++|+.+.... +.+...+++++|.++|+++|+|+ +||+||+++++++++++.+||
T Consensus 386 ~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gG 465 (482)
T PLN03007 386 MVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGG 465 (482)
T ss_pred eeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998753 5554441100 00234689999999999999877 899999999999999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 012061 453 SSERTFKELIDKWKCN 468 (472)
Q Consensus 453 ~~~~~~~~~~~~~~~~ 468 (472)
||++++++|++.+.+.
T Consensus 466 sS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 466 SSFNDLNKFMEELNSR 481 (482)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999998853
No 17
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.3e-65 Score=500.83 Aligned_cols=439 Identities=25% Similarity=0.355 Sum_probs=321.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCC-CCCC-
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDP-NSAN- 84 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 84 (472)
...+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+.+... ...+ .+.+...+++. ++++
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~----~~~~---~i~~~~lp~p~~dglp~ 75 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS----QLSS---SITLVSFPLPSVPGLPS 75 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc----cCCC---CeeEEECCCCccCCCCC
Confidence 3456799999999999999999999999999999999999976544432100 0011 23343333211 1122
Q ss_pred ----CCChH----HHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhh
Q 012061 85 ----ATDPF----LLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAI 155 (472)
Q Consensus 85 ----~~~~~----~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~ 155 (472)
..+.. ..+........+.++++++ .+++|||+|. +..|+..+|+++|||+++|++++++.++.+.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~-f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 76 SAESSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDY-ASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred CcccccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECC-cchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 11110 1222333445567888888 8899999999 788999999999999999999999888876544322
Q ss_pred hhccCCCCCCCCCCCCceeCCCCCC------CCCCCCCCCccCC--chhHHHHHHHhcccccccceEEEcccccccHHHH
Q 012061 156 VASKSTSSGSVEFDDDFIEIPGLPP------IPLSSVPPAVMDS--KSLFATSFLENGNSFVKSNGVLINSFDALEADTL 227 (472)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~l~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 227 (472)
. ...... ...+....+|++.| +...+++.++... .......+.+......+++++++|||++||+.++
T Consensus 155 ~--~~~~~~--~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 155 M--EGGDLR--STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred h--hcccCC--CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 1 110000 00010112444322 3335666544311 1112233334444566889999999999999999
Q ss_pred HHHhcccccCCCCCeeEecccCCCC-c-cCCC--C-CCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhC
Q 012061 228 VALNGRRVVAGLPPVYAVGPLLPCE-F-EKRD--D-PSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSS 302 (472)
Q Consensus 228 ~~~~~~~~~p~~p~v~~vGpl~~~~-~-~~~~--~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 302 (472)
++++.. ..++++.|||+.... . .... . .....|.+|||.+++++||||||||+...+.+++.+++.+|+.+
T Consensus 231 ~~l~~~----~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s 306 (472)
T PLN02670 231 DLLSDL----YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKS 306 (472)
T ss_pred HHHHHh----hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 998764 125899999997531 1 1100 0 00123999999999899999999999999999999999999999
Q ss_pred CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEec
Q 012061 303 GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVW 382 (472)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 382 (472)
+.+|||+++.+.... ......+|++|.+++++.++++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 307 ~~~FlWv~r~~~~~~---~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~ 383 (472)
T PLN02670 307 ETPFFWVLRNEPGTT---QNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILF 383 (472)
T ss_pred CCCEEEEEcCCcccc---cchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeC
Confidence 999999998632111 11113588999999998999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhccCCChHHHHH
Q 012061 383 PHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND---FLREQAKRIEEEARKAIGVGGSSERTFK 459 (472)
Q Consensus 383 P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 459 (472)
|+++||+.||+++++.|+|+.+++.+ +.+.++.++|+++|+++|.|+ +||+||++++++++.. +...+.++
T Consensus 384 P~~~DQ~~Na~~v~~~g~Gv~l~~~~--~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~ 457 (472)
T PLN02670 384 PVLNEQGLNTRLLHGKKLGLEVPRDE--RDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVD 457 (472)
T ss_pred cchhccHHHHHHHHHcCeeEEeeccc--cCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHH
Confidence 99999999999999999999994311 123589999999999999765 7999999999997754 88889999
Q ss_pred HHHHHHHhccC
Q 012061 460 ELIDKWKCNNN 470 (472)
Q Consensus 460 ~~~~~~~~~~~ 470 (472)
+|++.+.++++
T Consensus 458 ~~~~~l~~~~~ 468 (472)
T PLN02670 458 ELVHYLRENRS 468 (472)
T ss_pred HHHHHHHHhcc
Confidence 99999987763
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.5e-64 Score=487.76 Aligned_cols=418 Identities=21% Similarity=0.292 Sum_probs=311.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCC-CccceEEeecCCCCCCCCCC--
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYP-QVTAKRFHLLPFDPNSANAT-- 86 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 86 (472)
++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. ...+ .+ .+.+...+.. +.++..
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~------~~~~~~~-~v~~~~~p~~-~glp~g~e 76 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL------NLFPHNI-VFRSVTVPHV-DGLPVGTE 76 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc------ccCCCCc-eEEEEECCCc-CCCCCccc
Confidence 58999999999999999999999999999999999998765433321 0011 11 1222222211 122211
Q ss_pred -----C--hHHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhc
Q 012061 87 -----D--PFLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVAS 158 (472)
Q Consensus 87 -----~--~~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 158 (472)
. ....+...+....+.+.++++ .++||||+|. + .|+..+|+++|||++.|++++++.++.+.+ +.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~-~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---- 149 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-A-HWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---- 149 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-c-hhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----
Confidence 1 111233333344567888888 8899999995 4 599999999999999999999988877642 11
Q ss_pred cCCCCCCCCCCCCceeCCCCCC----CCCCCCCCCcc--C--CchhHHHHHHHhcccccccceEEEcccccccHHHHHHH
Q 012061 159 KSTSSGSVEFDDDFIEIPGLPP----IPLSSVPPAVM--D--SKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVAL 230 (472)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~----~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 230 (472)
.. .. ..+|++|. ++..+++.... . ........+.+......+++++++|||+++|+.+++++
T Consensus 150 ~~-------~~---~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~ 219 (453)
T PLN02764 150 GE-------LG---VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYI 219 (453)
T ss_pred cc-------CC---CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHH
Confidence 11 10 12466652 44455554211 1 11122233333334567788999999999999999998
Q ss_pred hcccccCCCCCeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEE
Q 012061 231 NGRRVVAGLPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVV 310 (472)
Q Consensus 231 ~~~~~~p~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~ 310 (472)
+.. ..++++.|||++....... . ....|.+|||.+++++||||||||+...+.+++.+++.+|+..+.+|+|++
T Consensus 220 ~~~----~~~~v~~VGPL~~~~~~~~-~-~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 220 EKH----CRKKVLLTGPVFPEPDKTR-E-LEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred Hhh----cCCcEEEeccCccCccccc-c-chhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 764 1257999999975331110 0 112399999999999999999999988999999999999999999999999
Q ss_pred eCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchh
Q 012061 311 KGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKI 390 (472)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (472)
+...... .....+|++|.+++++.|+++.+|+||.+||+|++|++|||||||||++|++++|||||++|++.||+.
T Consensus 294 r~~~~~~----~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 369 (453)
T PLN02764 294 KPPRGSS----TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVL 369 (453)
T ss_pred eCCCCCc----chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHH
Confidence 8532111 112458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHh-hCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012061 391 NAEAVER-AGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND-----FLREQAKRIEEEARKAIGVGGSSERTFKELIDK 464 (472)
Q Consensus 391 na~~v~~-~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (472)
||+++++ .|+|+.+.+. +...+++++|.++|+++|+++ ++|++++++++++ .++|||++++++|++.
T Consensus 370 na~~l~~~~g~gv~~~~~---~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~----~~~GSS~~~l~~lv~~ 442 (453)
T PLN02764 370 NTRLLSDELKVSVEVARE---ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL----ASPGLLTGYVDNFIES 442 (453)
T ss_pred HHHHHHHHhceEEEeccc---cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHH
Confidence 9999965 6999988320 113589999999999999764 3788888888776 4579999999999999
Q ss_pred HHhcc
Q 012061 465 WKCNN 469 (472)
Q Consensus 465 ~~~~~ 469 (472)
+.+..
T Consensus 443 ~~~~~ 447 (453)
T PLN02764 443 LQDLV 447 (453)
T ss_pred HHHhc
Confidence 98653
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.1e-64 Score=495.48 Aligned_cols=430 Identities=32% Similarity=0.468 Sum_probs=324.0
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCC-CCCC
Q 012061 6 GFDSHPHVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPF-DPNS 82 (472)
Q Consensus 6 ~~~~~~~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (472)
+.+.+.||+++|+|++||++|++.||+.|++| ||+|||++++.+.+.+++... .+ .+.+...+. .++.
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~------~~---gi~fv~lp~~~p~~ 76 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK------PD---NIRFATIPNVIPSE 76 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC------CC---CEEEEECCCCCCCc
Confidence 45567899999999999999999999999999 999999999987665554210 11 233443332 1111
Q ss_pred CC-CCChHHHHHHHHHHhHhhhhhhcC-C--CCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhc
Q 012061 83 AN-ATDPFLLRWEAIRRSAHLLAPLLS-P--PLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVAS 158 (472)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~~~~~~~ll~-~--~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 158 (472)
.. ..+....+........+.++++++ + ++||||+|. +..|+..+|+++|||++.++++++..++.+.+++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~-~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~-- 153 (459)
T PLN02448 77 LVRAADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADT-YLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP-- 153 (459)
T ss_pred cccccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECC-ccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh--
Confidence 11 122222222223345567778887 5 679999999 7889999999999999999999998887776665432
Q ss_pred cC--CCCCCCCCCCCce-eCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccc
Q 012061 159 KS--TSSGSVEFDDDFI-EIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRV 235 (472)
Q Consensus 159 ~~--~~~~~~~~~~~~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 235 (472)
+. .+.......+.++ .+|+++++...+++..+........+.+........+++++++|||++||+.++++++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-- 231 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK-- 231 (459)
T ss_pred hccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh--
Confidence 11 1111000011112 378888888888887654433333455556666667788999999999999999998765
Q ss_pred cCCCCCeeEecccCCCCccC------CCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEE
Q 012061 236 VAGLPPVYAVGPLLPCEFEK------RDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWV 309 (472)
Q Consensus 236 ~p~~p~v~~vGpl~~~~~~~------~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~ 309 (472)
..++++.|||+....... ...+++..+.+|++.++++++|||||||....+.+++++++.+|+.++.+|||+
T Consensus 232 --~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~ 309 (459)
T PLN02448 232 --FPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWV 309 (459)
T ss_pred --cCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 124799999997532110 001111238999999999999999999998888999999999999999999998
Q ss_pred EeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccch
Q 012061 310 VKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQK 389 (472)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 389 (472)
++.. ..++.+++. +|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 310 ~~~~--------------~~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~ 374 (459)
T PLN02448 310 ARGE--------------ASRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQP 374 (459)
T ss_pred EcCc--------------hhhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccch
Confidence 7641 022333332 4667779999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhh-CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 390 INAEAVERA-GLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND-----FLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 390 ~na~~v~~~-G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
.||+++++. |+|+.+.++. ++...+++++|+++|+++|+|+ +||+||+++++++++++.+||||++++++|++
T Consensus 375 ~na~~v~~~~g~G~~~~~~~-~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~ 453 (459)
T PLN02448 375 LNSKLIVEDWKIGWRVKREV-GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIR 453 (459)
T ss_pred hhHHHHHHHhCceEEEeccc-ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999984 8888884310 0123579999999999999753 79999999999999999999999999999999
Q ss_pred HHHh
Q 012061 464 KWKC 467 (472)
Q Consensus 464 ~~~~ 467 (472)
.+++
T Consensus 454 ~~~~ 457 (459)
T PLN02448 454 DISQ 457 (459)
T ss_pred HHhc
Confidence 9875
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.7e-64 Score=491.06 Aligned_cols=419 Identities=20% Similarity=0.278 Sum_probs=308.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCC-CCCCCCC
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFD-PNSANAT 86 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (472)
+++.||+++|+|++||++|++.||+.|+++|++|||++++.+...++..+. ..+. +.+...+++ .+.++..
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-----~~~~---i~~~~i~lP~~dGLP~g 73 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-----FPDS---IVFEPLTLPPVDGLPFG 73 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-----CCCc---eEEEEecCCCcCCCCCc
Confidence 456899999999999999999999999999999999999876554443221 0111 223222211 1122211
Q ss_pred -----Ch----HHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhh
Q 012061 87 -----DP----FLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIV 156 (472)
Q Consensus 87 -----~~----~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 156 (472)
+. ...+...+....+.++++++ .+|||||+|. + +|+..+|+++|||++.|++++++.++.+.+ +...
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~-~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~~ 150 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-V-HWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRAE 150 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-c-hhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHhh
Confidence 00 11223333345557777777 7899999995 5 599999999999999999999988877665 2110
Q ss_pred hccCCCCCCCCCCCCceeCCCCCC----CCCCC--CCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHH
Q 012061 157 ASKSTSSGSVEFDDDFIEIPGLPP----IPLSS--VPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVAL 230 (472)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 230 (472)
.+ ..+|++|. ++..+ ++.++.. ....+.+......+++++++|||+++|+.+++++
T Consensus 151 -----------~~---~~~pg~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 212 (446)
T PLN00414 151 -----------LG---FPPPDYPLSKVALRGHDANVCSLFAN----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFI 212 (446)
T ss_pred -----------cC---CCCCCCCCCcCcCchhhcccchhhcc----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHH
Confidence 00 12355542 22122 1121211 1123333445566789999999999999999988
Q ss_pred hcccccCCCCCeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEE
Q 012061 231 NGRRVVAGLPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVV 310 (472)
Q Consensus 231 ~~~~~~p~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~ 310 (472)
+.. ..++++.|||+...........++..|.+|||.+++++||||||||....+.+++.+++.+|+.++.+|+|++
T Consensus 213 ~~~----~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvv 288 (446)
T PLN00414 213 ERQ----CQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAV 288 (446)
T ss_pred HHh----cCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 764 1247999999975331110111123399999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchh
Q 012061 311 KGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKI 390 (472)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 390 (472)
..+..... ....+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.
T Consensus 289 r~~~~~~~----~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~ 364 (446)
T PLN00414 289 MPPKGSST----VQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVL 364 (446)
T ss_pred ecCCCccc----chhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHH
Confidence 86322111 12458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHH-hhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012061 391 NAEAVE-RAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND-----FLREQAKRIEEEARKAIGVGGSSERTFKELIDK 464 (472)
Q Consensus 391 na~~v~-~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (472)
||++++ +.|+|+.+++. +.+.+++++|+++++++|+|+ ++|++|+++++.+ .++||++ ..+++|+++
T Consensus 365 na~~~~~~~g~g~~~~~~---~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~---~~~gg~s-s~l~~~v~~ 437 (446)
T PLN00414 365 ITRLLTEELEVSVKVQRE---DSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETL---VSPGLLS-GYADKFVEA 437 (446)
T ss_pred HHHHHHHHhCeEEEeccc---cCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH---HcCCCcH-HHHHHHHHH
Confidence 999996 57999999421 112589999999999999753 3899999999885 3456634 338999999
Q ss_pred HHhccC
Q 012061 465 WKCNNN 470 (472)
Q Consensus 465 ~~~~~~ 470 (472)
+++..+
T Consensus 438 ~~~~~~ 443 (446)
T PLN00414 438 LENEVN 443 (446)
T ss_pred HHHhcc
Confidence 976543
No 21
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.8e-64 Score=488.38 Aligned_cols=424 Identities=28% Similarity=0.444 Sum_probs=311.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCC-CCCC-C-CC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQ-HHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFD-PNSA-N-AT 86 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~ 86 (472)
.||+++|+|++||++|++.||+.|+. +|+.|||++++.+.. +. ..... ...+. +.+...+.. ++.. . ..
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~-~~~~~-~~~~~---i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RS-MIPNH-NNVEN---LSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hh-hhccC-CCCCC---EEEEEcCCCCCCccccccc
Confidence 49999999999999999999999996 799999999985311 11 01000 01112 333333321 1110 0 11
Q ss_pred ChHHHHHHHHHHhHhhhhhhcC-C----C-CcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccC
Q 012061 87 DPFLLRWEAIRRSAHLLAPLLS-P----P-LSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKS 160 (472)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~ll~-~----~-~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~ 160 (472)
+....+........+.+.++++ + + ++|||+|. +.+|+..+|+++|||+++|++++++.++.+.+++...
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~-~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTI-LPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECC-ccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 2222333344444556777766 3 3 49999999 7789999999999999999999999988876554211
Q ss_pred CCCCCCCCCCCceeCCCCCCCCCCCCCCCccCC--chhHHHHHHHhccccc--ccceEEEcccccccHHHHHHHhccccc
Q 012061 161 TSSGSVEFDDDFIEIPGLPPIPLSSVPPAVMDS--KSLFATSFLENGNSFV--KSNGVLINSFDALEADTLVALNGRRVV 236 (472)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~~~ 236 (472)
+..+.+|+++++...++|.++... ...+.+.+.+...... .++++++|||++||+..+++++.
T Consensus 152 ---------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---- 218 (455)
T PLN02152 152 ---------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---- 218 (455)
T ss_pred ---------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc----
Confidence 012468999888888888866421 2222344444444332 24699999999999999998743
Q ss_pred CCCCCeeEecccCCCCc---cC--C--C-CCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEE
Q 012061 237 AGLPPVYAVGPLLPCEF---EK--R--D-DPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLW 308 (472)
Q Consensus 237 p~~p~v~~vGpl~~~~~---~~--~--~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~ 308 (472)
.+++.|||+.+... .. . . .+++.+|.+|||.+++++||||||||+...+.+++++++.+|+.++.+|||
T Consensus 219 ---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 219 ---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred ---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 25999999975321 00 0 0 011224999999999899999999999999999999999999999999999
Q ss_pred EEeCCCCCcch-hHHHHh--hhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc
Q 012061 309 VVKGKNVDKED-EESLKN--VLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF 385 (472)
Q Consensus 309 ~~~~~~~~~~~-~~~~~~--~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 385 (472)
+++.+...... ...... .+|++|.++.++. .++.+|+||.+||+|+++++|||||||||++|++++|||||++|++
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~-g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 374 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHELEEV-GMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW 374 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhccCC-eEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99852110000 000000 1367888887644 4666999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhh-CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 012061 386 GDQKINAEAVERA-GLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND--FLREQAKRIEEEARKAIGVGGSSERTFKELI 462 (472)
Q Consensus 386 ~DQ~~na~~v~~~-G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (472)
+||+.||+++++. |+|+.+... ..+.+++++|+++|+++|+|+ +||+||+++++.+++++++||||++++++|+
T Consensus 375 ~DQ~~na~~~~~~~~~G~~~~~~---~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li 451 (455)
T PLN02152 375 SDQPANAKLLEEIWKTGVRVREN---SEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFV 451 (455)
T ss_pred ccchHHHHHHHHHhCceEEeecC---cCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 9999999999984 666665221 223469999999999999765 4899999999999999999999999999999
Q ss_pred HHHH
Q 012061 463 DKWK 466 (472)
Q Consensus 463 ~~~~ 466 (472)
++++
T Consensus 452 ~~i~ 455 (455)
T PLN02152 452 KTLC 455 (455)
T ss_pred HHhC
Confidence 9874
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.7e-49 Score=389.09 Aligned_cols=388 Identities=18% Similarity=0.186 Sum_probs=263.2
Q ss_pred EEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc--cchhhhhhhhhhcCCCccceEEeecCC------C-CC
Q 012061 12 HVALI-PSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS--LAETQHVSHFLSAYPQVTAKRFHLLPF------D-PN 81 (472)
Q Consensus 12 ~il~~-~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~ 81 (472)
+|+.+ |.++.||+.-+..|+++|++|||+||++++..... .....+. +.+....... . ..
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNI----------TEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCE----------EEEEcCCChHHHHHHHhhhh
Confidence 57755 88999999999999999999999999998754211 1001111 1111100000 0 00
Q ss_pred CCCC---C-ChH---H-H--HHHHHHH---hHhhhhhhcC---CCCcEEEEcCCChhhhHHHHHhc-CCCeEEEeCccHH
Q 012061 82 SANA---T-DPF---L-L--RWEAIRR---SAHLLAPLLS---PPLSALITDVTLISAVLPVTINL-HLPNYVLFTASAK 144 (472)
Q Consensus 82 ~~~~---~-~~~---~-~--~~~~~~~---~~~~~~~ll~---~~~D~vI~D~~~~~~~~~vA~~l-gIP~v~~~~~~~~ 144 (472)
.+.. . +.. . . .....+. ..+.+.++++ .++|+||+|. +..|+..+|+.+ ++|.|.+++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~-~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEA-FLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecc-cchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 0000 0 000 0 0 0011111 1224455553 4799999998 788999999999 9998777664332
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCC-CCceeCCCCCCCCCCCCCCCcc---CCch----------------hHHHHHHHh
Q 012061 145 MFSLTASFPAIVASKSTSSGSVEFD-DDFIEIPGLPPIPLSSVPPAVM---DSKS----------------LFATSFLEN 204 (472)
Q Consensus 145 ~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~p~l~~~~~~~~~~~~~---~~~~----------------~~~~~~~~~ 204 (472)
...... .+ + ...|.+.|.........+. +..+ ...+...+.
T Consensus 171 ~~~~~~-----------------~gg~--p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (507)
T PHA03392 171 AENFET-----------------MGAV--SRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQ 231 (507)
T ss_pred hhHHHh-----------------hccC--CCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 221111 11 1 1111111221122221111 1111 001111222
Q ss_pred ccc--------ccccceEEEcccccccHHHHHHHhcccccCCCCCeeEecccCCCC-ccCCCCCCccchhhhccCCCCCc
Q 012061 205 GNS--------FVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAVGPLLPCE-FEKRDDPSTSLILKWLDDQPEGS 275 (472)
Q Consensus 205 ~~~--------~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~vGpl~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 275 (472)
+.. ..+.+.+++|+.+.++++ +|..|++++|||+..+. ...+.+++ +.+|++.++ ++
T Consensus 232 f~~~~~~~~~l~~~~~l~lvns~~~~d~~----------rp~~p~v~~vGgi~~~~~~~~~l~~~---l~~fl~~~~-~g 297 (507)
T PHA03392 232 FGPDTPTIRELRNRVQLLFVNVHPVFDNN----------RPVPPSVQYLGGLHLHKKPPQPLDDY---LEEFLNNST-NG 297 (507)
T ss_pred cCCCCCCHHHHHhCCcEEEEecCccccCC----------CCCCCCeeeecccccCCCCCCCCCHH---HHHHHhcCC-Cc
Confidence 111 124568899999999988 67788999999998754 22334556 999999875 46
Q ss_pred eEEEeecccc---cCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHh
Q 012061 276 VVYVSFGSRL---ALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVL 352 (472)
Q Consensus 276 ~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll 352 (472)
+|||||||.. ..+.+.++.+++++++.+.+|||+++..... ..+| +|+++.+|+||.+||
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~--------~~~p---------~Nv~i~~w~Pq~~lL 360 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA--------INLP---------ANVLTQKWFPQRAVL 360 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc--------ccCC---------CceEEecCCCHHHHh
Confidence 9999999984 3568899999999999999999999752100 1234 899999999999999
Q ss_pred cccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHH
Q 012061 353 SHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDF 432 (472)
Q Consensus 353 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 432 (472)
+||+|++||||||+||++||+++|||||++|+++||+.||+++++.|+|+.+ +...+++++|.++|+++|+|++
T Consensus 361 ~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l------~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 361 KHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRAL------DTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred cCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEe------ccCCcCHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999 7788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc
Q 012061 433 LREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCNN 469 (472)
Q Consensus 433 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (472)
||+||+++++.++.. .-+....+...+|.+.++.
T Consensus 435 y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 435 YRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 999999999998863 2233444446666666544
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.4e-50 Score=409.90 Aligned_cols=383 Identities=25% Similarity=0.323 Sum_probs=218.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCC--CCCCCCC--CC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPF--DPNSANA--TD 87 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~ 87 (472)
||+++|. +.||+.++..|+++|++|||+||++++.... .....+ .. .+++...+. ..+.... .+
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~ 69 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSK-------PS---NIRFETYPDPYPEEEFEEIFPE 69 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S----CCEEEE-----TT------TT
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccc-------cc---ceeeEEEcCCcchHHHhhhhHH
Confidence 5888885 7799999999999999999999999875311 011000 00 111111111 1111110 10
Q ss_pred h-------------HHHHHHHHHHhH----hhhhhhc------C----CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeC
Q 012061 88 P-------------FLLRWEAIRRSA----HLLAPLL------S----PPLSALITDVTLISAVLPVTINLHLPNYVLFT 140 (472)
Q Consensus 88 ~-------------~~~~~~~~~~~~----~~~~~ll------~----~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~ 140 (472)
. +........... ...++++ + .++|++|+|. +..|+..+|+.+|||.+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~-f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 70 FISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDA-FDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEE-EESSHHHHHHHHHHTHHHHHH
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEee-ccchhHHHHHHhcCCeEEEec
Confidence 0 011111111101 0111122 1 2799999999 778999999999999865432
Q ss_pred ccHHHHHHHhhhhhhhhccCCCCCCCCC-CCCceeCCCCCCCCCCCCCCCcc---CCchhHHHH----HHHhcc-c----
Q 012061 141 ASAKMFSLTASFPAIVASKSTSSGSVEF-DDDFIEIPGLPPIPLSSVPPAVM---DSKSLFATS----FLENGN-S---- 207 (472)
Q Consensus 141 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~-~---- 207 (472)
.... . ... ... +. ...|.+.|.....++..+. +..+.+... ...... .
T Consensus 149 ~~~~----------~---~~~----~~~~g~--p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~ 209 (500)
T PF00201_consen 149 STPM----------Y---DLS----SFSGGV--PSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKL 209 (500)
T ss_dssp CCSC----------S---CCT----CCTSCC--CTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS
T ss_pred cccc----------c---hhh----hhccCC--CCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHH
Confidence 2110 0 000 001 11 2234444443333333332 222222111 111110 0
Q ss_pred --------------ccccceEEEcccccccHHHHHHHhcccccCCCCCeeEecccCCCCccCCCCCCccchhhhccCCCC
Q 012061 208 --------------FVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPE 273 (472)
Q Consensus 208 --------------~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (472)
+.+.+.+++|+.+.++.+ +|..|++++||++...+. .+.+.+ +.+|++...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~p----------rp~~p~v~~vGgl~~~~~-~~l~~~---~~~~~~~~~~ 275 (500)
T PF00201_consen 210 YKKYFGFPFSFRELLSNASLVLINSHPSLDFP----------RPLLPNVVEVGGLHIKPA-KPLPEE---LWNFLDSSGK 275 (500)
T ss_dssp -EEESS-GGGCHHHHHHHHHCCSSTEEE--------------HHHHCTSTTGCGC-S-----TCHHH---HHHHTSTTTT
T ss_pred HhhhcccccccHHHHHHHHHHhhhccccCcCC----------cchhhcccccCccccccc-cccccc---cchhhhccCC
Confidence 112334566777777655 455789999999976543 334555 8899998566
Q ss_pred CceEEEeecccccC-CHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHh
Q 012061 274 GSVVYVSFGSRLAL-SMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVL 352 (472)
Q Consensus 274 ~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll 352 (472)
+++|||||||.... +.+..+.++++|++++.+|||+++.. .. ..+| +|+++.+|+||.+||
T Consensus 276 ~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~----~~l~---------~n~~~~~W~PQ~~lL 337 (500)
T PF00201_consen 276 KGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PP----ENLP---------KNVLIVKWLPQNDLL 337 (500)
T ss_dssp TEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HG----CHHH---------TTEEEESS--HHHHH
T ss_pred CCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cc----cccc---------ceEEEeccccchhhh
Confidence 77999999998643 45558889999999999999999761 10 1233 889999999999999
Q ss_pred cccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHH
Q 012061 353 SHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDF 432 (472)
Q Consensus 353 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 432 (472)
+||++++||||||+||++||+++|||||++|+++||+.||+++++.|+|+.+ +...++.++|.++|+++|+|++
T Consensus 338 ~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l------~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 338 AHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVL------DKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp TSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEE------GGGC-SHHHHHHHHHHHHHSHH
T ss_pred hcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEE------EecCCcHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999 8889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 433 LREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 433 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
|++||+++++.++.. --+..+.+...+|.+.+
T Consensus 412 y~~~a~~ls~~~~~~---p~~p~~~~~~~ie~v~~ 443 (500)
T PF00201_consen 412 YKENAKRLSSLFRDR---PISPLERAVWWIEYVAR 443 (500)
T ss_dssp HHHHHHHHHHTTT----------------------
T ss_pred HHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHh
Confidence 999999999998753 12233334444444443
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1e-42 Score=341.55 Aligned_cols=375 Identities=18% Similarity=0.232 Sum_probs=240.1
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHHHHHH
Q 012061 16 IPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLLRWEA 95 (472)
Q Consensus 16 ~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (472)
+.+|++||++|++.||++|+++||+|+|++++.+++.++..|+ ++......... ...... ....+....+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~-~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGA-EFVLYGSALPP-----PDNPPE-NTEEEPIDIIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCC-EEEecCCcCcc-----cccccc-ccCcchHHHHHHH
Confidence 4689999999999999999999999999999999888888886 22211111000 000000 0001111111111
Q ss_pred HHH---hHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCCCCCCCC
Q 012061 96 IRR---SAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVEFDDD 171 (472)
Q Consensus 96 ~~~---~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 171 (472)
+.. ....+.++++ .+||+||+|. +.+++..+|+++|||++.+++.+... ..++... .+ .
T Consensus 74 ~~~~~~~~~~l~~~~~~~~pDlVi~d~-~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~-----~--- 136 (392)
T TIGR01426 74 LDEAEDVLPQLEEAYKGDRPDLIVYDI-ASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SP-----A--- 136 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECC-ccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----cc-----c---
Confidence 111 2223444555 6999999999 77799999999999999875442111 0000000 00 0
Q ss_pred ceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccc--------cccceEEEcccccccHHHHHHHhcccccCCC-CCe
Q 012061 172 FIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSF--------VKSNGVLINSFDALEADTLVALNGRRVVAGL-PPV 242 (472)
Q Consensus 172 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~-p~v 242 (472)
.+.+... ..............+.+...+..... ......+..+.+.+.+. .+.+ +++
T Consensus 137 ---~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~----------~~~~~~~~ 202 (392)
T TIGR01426 137 ---GEGSAEE-GAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA----------GETFDDSF 202 (392)
T ss_pred ---chhhhhh-hccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC----------ccccCCCe
Confidence 0000000 00000000011111111111111000 01111222222223222 1123 379
Q ss_pred eEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHH
Q 012061 243 YAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEES 322 (472)
Q Consensus 243 ~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 322 (472)
+++||+..... + ...|....+++++||||+||......+.+..+++++.+.+.+++|..+.. .+.+.
T Consensus 203 ~~~Gp~~~~~~------~---~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~----~~~~~ 269 (392)
T TIGR01426 203 TFVGPCIGDRK------E---DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG----VDPAD 269 (392)
T ss_pred EEECCCCCCcc------c---cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC----CChhH
Confidence 99999875432 1 33466666778899999999866667788899999999999999988752 11111
Q ss_pred HHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeee
Q 012061 323 LKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGM 402 (472)
Q Consensus 323 ~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~ 402 (472)
+. .+ .+|+.+.+|+||.++|.+ ++++|||||+||++|++++|+|+|++|...||+.||+++++.|+|+
T Consensus 270 ~~-~~---------~~~v~~~~~~p~~~ll~~--~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~ 337 (392)
T TIGR01426 270 LG-EL---------PPNVEVRQWVPQLEILKK--ADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGR 337 (392)
T ss_pred hc-cC---------CCCeEEeCCCCHHHHHhh--CCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEE
Confidence 11 11 278999999999999966 6679999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 403 WVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 403 ~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
.+ ....+++++|.++|+++|+|++|+++++++++++++. ++..+.++.+.+
T Consensus 338 ~l------~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~----~~~~~aa~~i~~ 388 (392)
T TIGR01426 338 HL------PPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA----GGARRAADEIEG 388 (392)
T ss_pred Ee------ccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 99 6678899999999999999999999999999998865 444444444433
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.9e-43 Score=345.58 Aligned_cols=366 Identities=18% Similarity=0.138 Sum_probs=229.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCC-ChH
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANAT-DPF 89 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 89 (472)
|||+|+++|+.||++|++.||++|++|||+|+|++++.++..++..|+ ++.................+....... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGL-EFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCC-ceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 799999999999999999999999999999999999988888887776 222211111000000000000000000 111
Q ss_pred HH---HHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCC
Q 012061 90 LL---RWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGS 165 (472)
Q Consensus 90 ~~---~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 165 (472)
.. +..........+.+.++ .+||+||+|. +.+++..+|+++|||++.+++++......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~-~~~~~~~~A~~~giP~v~~~~~~~~~~~~----------------- 141 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARDWGPDLVVADP-LAFAGAVAAEALGIPAVRLLLGPDTPTSA----------------- 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCc-HHHHHHHHHHHhCCCeEEeecccCCcccc-----------------
Confidence 11 11111122223334444 6999999999 78899999999999999988764321000
Q ss_pred CCCCCCceeCCCCCCCCCCCCCCCccCCc-hhHHHHHHHhcccccccc-------------eEEEcccccccHHHHHHHh
Q 012061 166 VEFDDDFIEIPGLPPIPLSSVPPAVMDSK-SLFATSFLENGNSFVKSN-------------GVLINSFDALEADTLVALN 231 (472)
Q Consensus 166 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~l~~s~~~le~~~~~~~~ 231 (472)
..| +..... ........ ..+...........++.. ..+....+.+.+.
T Consensus 142 --------~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~------ 203 (401)
T cd03784 142 --------FPP---PLGRAN-LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP------ 203 (401)
T ss_pred --------CCC---ccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC------
Confidence 000 000000 00000000 000000000000011101 1111111111111
Q ss_pred cccccCCCC-CeeEec-ccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCC-HHHHHHHHHHHHhCCCceEE
Q 012061 232 GRRVVAGLP-PVYAVG-PLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALS-MEQTKELGDGLLSSGCRFLW 308 (472)
Q Consensus 232 ~~~~~p~~p-~v~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~~~ 308 (472)
.+.++ +..++| ++...+.....+.+ +..|++. ++++|||++||..... .+.+..++++++..+.+++|
T Consensus 204 ----~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~ 274 (401)
T cd03784 204 ----PPDWPRFDLVTGYGFRDVPYNGPPPPE---LWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAIL 274 (401)
T ss_pred ----CCCccccCcEeCCCCCCCCCCCCCCHH---HHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEE
Confidence 12233 456665 43332222222334 7788875 4569999999997644 56778899999999999999
Q ss_pred EEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccc
Q 012061 309 VVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQ 388 (472)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 388 (472)
.++...... ...| +|+++.+|+||.++|.| |++||||||+||++|++++|||+|++|+..||
T Consensus 275 ~~g~~~~~~-------~~~~---------~~v~~~~~~p~~~ll~~--~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ 336 (401)
T cd03784 275 SLGWGGLGA-------EDLP---------DNVRVVDFVPHDWLLPR--CAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQ 336 (401)
T ss_pred EccCccccc-------cCCC---------CceEEeCCCCHHHHhhh--hheeeecCCchhHHHHHHcCCCEEeeCCCCCc
Confidence 988621000 1122 79999999999999966 77799999999999999999999999999999
Q ss_pred hhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 012061 389 KINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKA 447 (472)
Q Consensus 389 ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~ 447 (472)
+.||+++++.|+|+.+ +...+++++|.++|++++++ .++++++++++.+++.
T Consensus 337 ~~~a~~~~~~G~g~~l------~~~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~~ 388 (401)
T cd03784 337 PFWAARVAELGAGPAL------DPRELTAERLAAALRRLLDP-PSRRRAAALLRRIREE 388 (401)
T ss_pred HHHHHHHHHCCCCCCC------CcccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHhc
Confidence 9999999999999999 66668999999999999985 4666777777776543
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.3e-42 Score=350.17 Aligned_cols=405 Identities=29% Similarity=0.423 Sum_probs=245.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCC---
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANAT--- 86 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 86 (472)
..|++++++|++||++|+..||+.|+++||+||++++.......... ........ +....+...... +.++..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~ 80 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKK--INPPPFEFLTIP-DGLPEGWED 80 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeee--eecChHHhhhhh-hhhccchHH
Confidence 56899999999999999999999999999999999988654433221 10000000 000000000000 111100
Q ss_pred ---ChHHHHHHHHHHhHhhhhhhcC-------CCCcEEEEcCCChhhhHHHHHhcC-CCeEEEeCccHHHHHHHhhhhhh
Q 012061 87 ---DPFLLRWEAIRRSAHLLAPLLS-------PPLSALITDVTLISAVLPVTINLH-LPNYVLFTASAKMFSLTASFPAI 155 (472)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~~~ll~-------~~~D~vI~D~~~~~~~~~vA~~lg-IP~v~~~~~~~~~~~~~~~~p~~ 155 (472)
............+...+.+.+. .++|++|+|. +..|...+|.... |+..++.+.++.......+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~ 159 (496)
T KOG1192|consen 81 DDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDP-FLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEech-hhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc
Confidence 0011111222222223333221 2499999999 6667777777765 99888887776655443222211
Q ss_pred hhccCCCCCCCCCCCCceeCCCCCC-CCCCCCCCCccCCch--hHHHHHHHhccc----ccccceEEEcc-cccccHHHH
Q 012061 156 VASKSTSSGSVEFDDDFIEIPGLPP-IPLSSVPPAVMDSKS--LFATSFLENGNS----FVKSNGVLINS-FDALEADTL 227 (472)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~l~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~l~~s-~~~le~~~~ 227 (472)
. ...... ....+ .+.+++..+ +....++........ ............ .....+++.++ +..++....
T Consensus 160 ~--~p~~~~-~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~ 235 (496)
T KOG1192|consen 160 Y--VPSPFS-LSSGD-DMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPL 235 (496)
T ss_pred c--cCcccC-ccccc-cCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcc
Confidence 0 000000 00000 000000000 000000000000000 000011111111 12222444444 445544433
Q ss_pred HHHhcccccCCCCCeeEecccCCCCccCCCCCCccchhhhccCCCCC--ceEEEeecccc---cCCHHHHHHHHHHHHhC
Q 012061 228 VALNGRRVVAGLPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEG--SVVYVSFGSRL---ALSMEQTKELGDGLLSS 302 (472)
Q Consensus 228 ~~~~~~~~~p~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~GS~~---~~~~~~~~~~~~al~~~ 302 (472)
..+++ +|..++++.|||+........ ... +.+|++..+.. ++|||||||+. .++.++..+++.+|+++
T Consensus 236 ~~~~~---~~~~~~v~~IG~l~~~~~~~~-~~~---~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~ 308 (496)
T KOG1192|consen 236 LDFEP---RPLLPKVIPIGPLHVKDSKQK-SPL---PLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESL 308 (496)
T ss_pred cCCCC---CCCCCCceEECcEEecCcccc-ccc---cHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhC
Confidence 22211 245679999999988733221 113 67788877765 89999999997 78999999999999999
Q ss_pred -CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHH-hcccCcCcEEeecCcchHHHHHHhCCcEE
Q 012061 303 -GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKV-LSHRAVGGFVSHGGWNSLVEAARHGVPLL 380 (472)
Q Consensus 303 -~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~l-l~~~~~~~~I~HgG~~s~~eal~~GvP~l 380 (472)
+++|+|+++.+ .... +++++.++ ...|++..+|+||.++ |+|+++++||||||||||+|++++|||||
T Consensus 309 ~~~~FiW~~~~~-----~~~~----~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v 378 (496)
T KOG1192|consen 309 QGVTFLWKYRPD-----DSIY----FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMV 378 (496)
T ss_pred CCceEEEEecCC-----cchh----hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCcee
Confidence 88999999872 1100 22222222 2257888899999998 59999999999999999999999999999
Q ss_pred ecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 012061 381 VWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARK 446 (472)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 446 (472)
++|+++||+.||+++++.|.|..+ ...+.+.+.+.+++.+++++++|+++++++++.++.
T Consensus 379 ~~Plf~DQ~~Na~~i~~~g~~~v~------~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 379 CVPLFGDQPLNARLLVRHGGGGVL------DKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRD 438 (496)
T ss_pred cCCccccchhHHHHHHhCCCEEEE------ehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHc
Confidence 999999999999999999888777 555566566999999999999999999999998763
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-40 Score=317.47 Aligned_cols=388 Identities=20% Similarity=0.248 Sum_probs=236.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCC-C-CC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSAN-A-TD 87 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 87 (472)
+|||+++..|+.||++|.++||++|.++||+|+|++++.+++.+++.|+ .+ ............. . .+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~-~f----------~~~~~~~~~~~~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGL-AF----------VAYPIRDSELATEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCc-ce----------eeccccCChhhhhhhhhh
Confidence 5899999999999999999999999999999999999999999998883 11 1111111000000 0 00
Q ss_pred hHHHHHHHHHH---hHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCC
Q 012061 88 PFLLRWEAIRR---SAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSS 163 (472)
Q Consensus 88 ~~~~~~~~~~~---~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 163 (472)
....+...+.. ....+-+++. ..+|+++.|. .. +...+++..++|++......... +|... ...+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~ 139 (406)
T COG1819 70 GVKSFRRLLQQFKKLIRELLELLRELEPDLVVDDA-RL-SLGLAARLLGIPVVGINVAPYTP------LPAAG--LPLPP 139 (406)
T ss_pred ccchhHHHhhhhhhhhHHHHHHHHhcchhhhhcch-hh-hhhhhhhhcccchhhhhhhhccC------Ccccc--cCccc
Confidence 11111111122 1222233444 6899999888 54 44488888999987554332211 11100 00000
Q ss_pred CCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhccccc---ccceEEEcccccccHHHHHHHhcccccC--C
Q 012061 164 GSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFV---KSNGVLINSFDALEADTLVALNGRRVVA--G 238 (472)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~s~~~le~~~~~~~~~~~~~p--~ 238 (472)
-. ..+. +..+.. ++......+....... ......+....+. +.-.-+..+-+.++....+. . +.| .
T Consensus 140 ~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 210 (406)
T COG1819 140 VG-IAGK--LPIPLY-PLPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDV---L-FPPGDR 210 (406)
T ss_pred cc-cccc--cccccc-ccChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCcccccccc---c-cCCCCC
Confidence 00 0000 001111 0111111111110000 0000000000000 00000011111111111000 0 000 1
Q ss_pred CC-CeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCc
Q 012061 239 LP-PVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDK 317 (472)
Q Consensus 239 ~p-~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 317 (472)
.| ...++||+...... + ...| ...++++||+|+||.... .++++.+++++..++.+++..++..
T Consensus 211 ~p~~~~~~~~~~~~~~~-----~---~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~---- 275 (406)
T COG1819 211 LPFIGPYIGPLLGEAAN-----E---LPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA---- 275 (406)
T ss_pred CCCCcCccccccccccc-----c---Ccch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc----
Confidence 12 34556666544332 1 3344 334567999999999765 8899999999999999998887551
Q ss_pred chhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHh
Q 012061 318 EDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVER 397 (472)
Q Consensus 318 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 397 (472)
+ .+. ..+| +|+.+.+|+||.++|.+ +++||||||+|||+|||++|||+|++|...||+.||.++++
T Consensus 276 -~-~~~-~~~p---------~n~~v~~~~p~~~~l~~--ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~ 341 (406)
T COG1819 276 -R-DTL-VNVP---------DNVIVADYVPQLELLPR--ADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE 341 (406)
T ss_pred -c-ccc-ccCC---------CceEEecCCCHHHHhhh--cCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH
Confidence 1 001 1234 89999999999999955 66799999999999999999999999999999999999999
Q ss_pred hCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 398 AGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 398 ~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
+|+|+.+ +...++++.|+++|+++|+|+.|+++++++++.+++. ++ .+.+.+.++....
T Consensus 342 ~G~G~~l------~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~----~g-~~~~a~~le~~~~ 400 (406)
T COG1819 342 LGAGIAL------PFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE----DG-PAKAADLLEEFAR 400 (406)
T ss_pred cCCceec------CcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc----cc-HHHHHHHHHHHHh
Confidence 9999999 7888999999999999999999999999999999987 22 5666666666543
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=1.4e-27 Score=228.70 Aligned_cols=318 Identities=16% Similarity=0.156 Sum_probs=198.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHH
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLL 91 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (472)
+|++...++-||++|.++||++|.++||+|.|++..... +..-+ +.. .+.+...+. ..+.....+..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~---e~~l~-------~~~-g~~~~~~~~--~~l~~~~~~~~ 69 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGI---EKTII-------EKE-NIPYYSISS--GKLRRYFDLKN 69 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcc---ccccC-------ccc-CCcEEEEec--cCcCCCchHHH
Confidence 699999999999999999999999999999999866432 11111 000 111222111 11221112222
Q ss_pred HHHHH--HHhHhhhhhhcC-CCCcEEEEcC-CChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCCCC
Q 012061 92 RWEAI--RRSAHLLAPLLS-PPLSALITDV-TLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVE 167 (472)
Q Consensus 92 ~~~~~--~~~~~~~~~ll~-~~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 167 (472)
+.... ....-....+++ .+||+||+.. +....+..+|+.+++|++++-...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------- 124 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 11111 112224445677 8999999877 233346788999999987652211
Q ss_pred CCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCCCCCeeEecc
Q 012061 168 FDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAVGP 247 (472)
Q Consensus 168 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~vGp 247 (472)
+||+. .+.+.+.. +. ++.+|++.... ++ ..+++++|+
T Consensus 125 -------~~g~~------------------nr~~~~~a------~~-v~~~f~~~~~~----------~~-~~k~~~tG~ 161 (352)
T PRK12446 125 -------TPGLA------------------NKIALRFA------SK-IFVTFEEAAKH----------LP-KEKVIYTGS 161 (352)
T ss_pred -------CccHH------------------HHHHHHhh------CE-EEEEccchhhh----------CC-CCCeEEECC
Confidence 11111 11222221 11 22333321111 11 136889998
Q ss_pred cCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCC-HHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhh
Q 012061 248 LLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALS-MEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNV 326 (472)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (472)
..+........+. ..+.+...+++++|+|..||.+... ++.+.+++..+.. +.+++|++|.. +.+ ..
T Consensus 162 Pvr~~~~~~~~~~---~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~-----~~~---~~ 229 (352)
T PRK12446 162 PVREEVLKGNREK---GLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG-----NLD---DS 229 (352)
T ss_pred cCCcccccccchH---HHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc-----hHH---HH
Confidence 7765432211111 3233344456779999999997655 4556666665543 47888888761 111 11
Q ss_pred hhHHHHHHhhcCCceeccCC-C-hHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc-----ccchhhHHHHHhhC
Q 012061 327 LGHELMEKIKDQGLVVKNWV-D-QDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF-----GDQKINAEAVERAG 399 (472)
Q Consensus 327 ~p~~~~~~~~~~~~~~~~~~-p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~v~~~G 399 (472)
.. .. .++.+.+|+ + ..+++++ ++++|||||.+|++|++++|+|+|++|+. .||..||+.+++.|
T Consensus 230 ~~-----~~--~~~~~~~f~~~~m~~~~~~--adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g 300 (352)
T PRK12446 230 LQ-----NK--EGYRQFEYVHGELPDILAI--TDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQG 300 (352)
T ss_pred Hh-----hc--CCcEEecchhhhHHHHHHh--CCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCC
Confidence 10 11 344556887 4 4477855 66799999999999999999999999985 48999999999999
Q ss_pred eeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHH-HHHHH
Q 012061 400 LGMWVRSWGWGTELRAKGDEIGLKIKDLMANDF-LREQA 437 (472)
Q Consensus 400 ~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~a 437 (472)
+|..+ ...+++++.|.+++.++++|++ |++++
T Consensus 301 ~~~~l------~~~~~~~~~l~~~l~~ll~~~~~~~~~~ 333 (352)
T PRK12446 301 YASVL------YEEDVTVNSLIKHVEELSHNNEKYKTAL 333 (352)
T ss_pred CEEEc------chhcCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999 7788899999999999998864 44333
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2.9e-24 Score=202.94 Aligned_cols=340 Identities=21% Similarity=0.237 Sum_probs=207.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChH
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHC-RVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPF 89 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (472)
++|++...++-||+.|.++|+++|.++|+ +|.+..+....+...... . .+.++..+.. .+.....+
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~----------~-~~~~~~I~~~--~~~~~~~~ 67 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ----------Y-GIEFELIPSG--GLRRKGSL 67 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc----------c-CceEEEEecc--cccccCcH
Confidence 47889999999999999999999999999 577775543322211110 0 2334443332 11112212
Q ss_pred HHHHH--HHHHhHhhhhhhcC-CCCcEEEEcC-CChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCC
Q 012061 90 LLRWE--AIRRSAHLLAPLLS-PPLSALITDV-TLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGS 165 (472)
Q Consensus 90 ~~~~~--~~~~~~~~~~~ll~-~~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 165 (472)
..+.. .+........++++ .+||+|+.-. +.+..+..+|..+|||.++.-...
T Consensus 68 ~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~----------------------- 124 (357)
T COG0707 68 KLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA----------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC-----------------------
Confidence 21111 12223446677888 8999999855 345456667788999988662211
Q ss_pred CCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCCCCCeeEe
Q 012061 166 VEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAV 245 (472)
Q Consensus 166 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~v 245 (472)
+||+. ++...+.. +. +..+|+..+.- ....+++.+
T Consensus 125 ---------~~G~a------------------nk~~~~~a------~~-V~~~f~~~~~~-----------~~~~~~~~t 159 (357)
T COG0707 125 ---------VPGLA------------------NKILSKFA------KK-VASAFPKLEAG-----------VKPENVVVT 159 (357)
T ss_pred ---------Ccchh------------------HHHhHHhh------ce-eeecccccccc-----------CCCCceEEe
Confidence 22221 11111111 11 22333321110 111257888
Q ss_pred cccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCC-HHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHH
Q 012061 246 GPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALS-MEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLK 324 (472)
Q Consensus 246 Gpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (472)
|-..+..... .+.. ....... .++++|+|..||.+... ++.+..+...+.+ +..+++..|. ...++.
T Consensus 160 G~Pvr~~~~~-~~~~---~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~-----~~~~~~- 227 (357)
T COG0707 160 GIPVRPEFEE-LPAA---EVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGK-----NDLEEL- 227 (357)
T ss_pred cCcccHHhhc-cchh---hhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCc-----chHHHH-
Confidence 8554433222 1111 1111111 25679999999997654 5555666666655 5677777776 112222
Q ss_pred hhhhHHHHHHhhcCC-ceeccCCChH-HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc----ccchhhHHHHHhh
Q 012061 325 NVLGHELMEKIKDQG-LVVKNWVDQD-KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF----GDQKINAEAVERA 398 (472)
Q Consensus 325 ~~~p~~~~~~~~~~~-~~~~~~~pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~ 398 (472)
.......| +.+.+|++.. .++ +..+++||++|.+|+.|++++|+|+|.+|+. .||..||+.+++.
T Consensus 228 -------~~~~~~~~~~~v~~f~~dm~~~~--~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~ 298 (357)
T COG0707 228 -------KSAYNELGVVRVLPFIDDMAALL--AAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA 298 (357)
T ss_pred -------HHHHhhcCcEEEeeHHhhHHHHH--HhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC
Confidence 22222244 6777888776 666 5677899999999999999999999999985 3899999999999
Q ss_pred CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 012061 399 GLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELI 462 (472)
Q Consensus 399 G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (472)
|.|+.+ +...+|++++.+.|.+++.++ ++.+++++..++. ....++.+.++.++
T Consensus 299 gaa~~i------~~~~lt~~~l~~~i~~l~~~~---~~l~~m~~~a~~~-~~p~aa~~i~~~~~ 352 (357)
T COG0707 299 GAALVI------RQSELTPEKLAELILRLLSNP---EKLKAMAENAKKL-GKPDAAERIADLLL 352 (357)
T ss_pred CCEEEe------ccccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 999999 777899999999999999885 3444455554442 33344444444333
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=6.9e-25 Score=209.47 Aligned_cols=301 Identities=20% Similarity=0.260 Sum_probs=185.4
Q ss_pred CEEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCC-CCCCCCCh
Q 012061 11 PHVALIPSA-GMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDP-NSANATDP 88 (472)
Q Consensus 11 ~~il~~~~~-~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (472)
|||++...+ +.||+...+.||++| |||+|+|++.....+..+.. + . .. ..+.... ......+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-~-------~---~~--~~~~~~~~~~~~~~~~ 65 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-F-------P---VR--EIPGLGPIQENGRLDR 65 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-c-------C---EE--EccCceEeccCCccch
Confidence 788888876 999999999999999 69999999987443333221 1 0 01 0111100 00011221
Q ss_pred HHHHHH------HHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCC
Q 012061 89 FLLRWE------AIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKST 161 (472)
Q Consensus 89 ~~~~~~------~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 161 (472)
...... ..........++++ .+||+||+|. .. .+..+|+..|||++.+.......
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~-~~~~aa~~~giP~i~i~~~~~~~---------------- 127 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YP-LAALAARRAGIPVIVISNQYWFL---------------- 127 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hH-HHHHHHHhcCCCEEEEEehHHcc----------------
Confidence 111111 11222234445566 7999999997 44 57789999999998776553211
Q ss_pred CCCCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhccc--ccccceEEEcccccccHHHHHHHhcccccCCC
Q 012061 162 SSGSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNS--FVKSNGVLINSFDALEADTLVALNGRRVVAGL 239 (472)
Q Consensus 162 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~ 239 (472)
.+.. .++ ....+...+.+.... ...++..+.-++. ... +..
T Consensus 128 -------------~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~------------~~~ 170 (318)
T PF13528_consen 128 -------------HPNF------WLP-----WDQDFGRLIERYIDRYHFPPADRRLALSFY-PPL------------PPF 170 (318)
T ss_pred -------------cccC------Ccc-----hhhhHHHHHHHhhhhccCCcccceecCCcc-ccc------------ccc
Confidence 0000 000 000111222222211 2233333433333 110 112
Q ss_pred CCeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCC-CceEEEEeCCCCCcc
Q 012061 240 PPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSG-CRFLWVVKGKNVDKE 318 (472)
Q Consensus 240 p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~ 318 (472)
.++.++||+.........+ .+++.|+|++|+.... .++++++..+ ..+++. +.. .
T Consensus 171 ~~~~~~~p~~~~~~~~~~~-------------~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~----~ 226 (318)
T PF13528_consen 171 FRVPFVGPIIRPEIRELPP-------------EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN----A 226 (318)
T ss_pred ccccccCchhcccccccCC-------------CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC----c
Confidence 2466788887544322111 2344799999987432 6667777765 566555 541 0
Q ss_pred hhHHHHhhhhHHHHHHhhcCCceeccCC--ChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCC--cccchhhHHH
Q 012061 319 DEESLKNVLGHELMEKIKDQGLVVKNWV--DQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPH--FGDQKINAEA 394 (472)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~ 394 (472)
.....+|+.+.++. +..++| ++++++|||||+||++|++++|+|+|++|. ..||..||++
T Consensus 227 --------------~~~~~~ni~~~~~~~~~~~~~m--~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~ 290 (318)
T PF13528_consen 227 --------------ADPRPGNIHVRPFSTPDFAELM--AAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARK 290 (318)
T ss_pred --------------ccccCCCEEEeecChHHHHHHH--HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHH
Confidence 01113899988876 444788 567789999999999999999999999999 7899999999
Q ss_pred HHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHH
Q 012061 395 VERAGLGMWVRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 395 v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
+++.|+|..+ +..+++++.|+++|+++
T Consensus 291 l~~~G~~~~~------~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 291 LEELGLGIVL------SQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHCCCeEEc------ccccCCHHHHHHHHhcC
Confidence 9999999999 78889999999999764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=2.1e-22 Score=191.83 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=90.6
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCC--hHHH
Q 012061 274 GSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVD--QDKV 351 (472)
Q Consensus 274 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p--q~~l 351 (472)
++.|+|.+||... ..++++|++.+. +.++++.. . .. ...++ +|+.+.+|.| ....
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~--~-~~----~~~~~---------~~v~~~~~~~~~~~~~ 244 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSY--E-VA----KNSYN---------ENVEIRRITTDNFKEL 244 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCC--C-CC----ccccC---------CCEEEEECChHHHHHH
Confidence 3467888887532 455677776653 33343321 0 00 01122 7888889997 3355
Q ss_pred hcccCcCcEEeecCcchHHHHHHhCCcEEecCCcc--cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 352 LSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFG--DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 352 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
| +.++++|||||++|++|++++|+|++++|..+ ||..||+.+++.|+|+.+ +..++ ++.+++.++++
T Consensus 245 l--~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l------~~~~~---~~~~~~~~~~~ 313 (321)
T TIGR00661 245 I--KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIAL------EYKEL---RLLEAILDIRN 313 (321)
T ss_pred H--HhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEc------ChhhH---HHHHHHHhccc
Confidence 5 77888999999999999999999999999965 899999999999999999 55444 66666667777
Q ss_pred CHHHH
Q 012061 430 NDFLR 434 (472)
Q Consensus 430 ~~~~~ 434 (472)
|+.|.
T Consensus 314 ~~~~~ 318 (321)
T TIGR00661 314 MKRYK 318 (321)
T ss_pred ccccc
Confidence 77654
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=1.4e-18 Score=168.71 Aligned_cols=341 Identities=16% Similarity=0.135 Sum_probs=198.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCC--ccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCCh
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTV--SLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDP 88 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (472)
|+|+|+..+..||...++.|++.|.++||+|++++..... ...+..+ +++...+.. .......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g-------------~~~~~~~~~--~~~~~~~ 66 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAG-------------IEFHFIPSG--GLRRKGS 66 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCC-------------CcEEEEecc--CcCCCCh
Confidence 7999999988899999999999999999999999875411 1111111 112211111 1111111
Q ss_pred HH---HHHHHHHHhHhhhhhhcC-CCCcEEEEcCCC-hhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCC
Q 012061 89 FL---LRWEAIRRSAHLLAPLLS-PPLSALITDVTL-ISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSS 163 (472)
Q Consensus 89 ~~---~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~-~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 163 (472)
.. .... .......+.++++ .+||+|++.... ...+..+++..++|++......
T Consensus 67 ~~~l~~~~~-~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------- 124 (357)
T PRK00726 67 LANLKAPFK-LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------------- 124 (357)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------------
Confidence 11 1111 1222334556677 799999998622 3344556777899987431100
Q ss_pred CCCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCCCCCee
Q 012061 164 GSVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVY 243 (472)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~ 243 (472)
. +. ...++... .++.++..+...+ . . . ...+++
T Consensus 125 -----------~-----------~~-------~~~r~~~~------~~d~ii~~~~~~~-----~--~-~----~~~~i~ 157 (357)
T PRK00726 125 -----------V-----------PG-------LANKLLAR------FAKKVATAFPGAF-----P--E-F----FKPKAV 157 (357)
T ss_pred -----------C-----------cc-------HHHHHHHH------HhchheECchhhh-----h--c-c----CCCCEE
Confidence 0 00 00111111 2233332221111 0 0 1 124788
Q ss_pred EecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC--ceEEEEeCCCCCcchhH
Q 012061 244 AVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGC--RFLWVVKGKNVDKEDEE 321 (472)
Q Consensus 244 ~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~ 321 (472)
++|+......... .. ..+-+...++.++|++..|+... ......+.+++.+... .++|++|.. ..+
T Consensus 158 vi~n~v~~~~~~~--~~---~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g-----~~~ 225 (357)
T PRK00726 158 VTGNPVREEILAL--AA---PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG-----DLE 225 (357)
T ss_pred EECCCCChHhhcc--cc---hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC-----cHH
Confidence 8886654322111 01 11111222344467776666422 1222223355554332 445566651 112
Q ss_pred HHHhhhhHHHHHHhhcCCceeccCC-ChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCC----cccchhhHHHHH
Q 012061 322 SLKNVLGHELMEKIKDQGLVVKNWV-DQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPH----FGDQKINAEAVE 396 (472)
Q Consensus 322 ~~~~~~p~~~~~~~~~~~~~~~~~~-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~ 396 (472)
++.+.+ + .+-++.+.+|+ +..+++ +.++++|+|+|.++++|++++|+|+|++|. .+||..|+..++
T Consensus 226 ~~~~~~-----~--~~~~v~~~g~~~~~~~~~--~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~ 296 (357)
T PRK00726 226 EVRAAY-----A--AGINAEVVPFIDDMAAAY--AAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALV 296 (357)
T ss_pred HHHHHh-----h--cCCcEEEeehHhhHHHHH--HhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH
Confidence 221111 1 11236777898 445888 557779999999999999999999999997 368999999999
Q ss_pred hhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 397 RAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 397 ~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+.|.|..+ +...++++.|++++.++++|++++++..+-+++ ..+..+..+.++.+++.+.
T Consensus 297 ~~~~g~~~------~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 297 DAGAALLI------PQSDLTPEKLAEKLLELLSDPERLEAMAEAARA----LGKPDAAERLADLIEELAR 356 (357)
T ss_pred HCCCEEEE------EcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHh----cCCcCHHHHHHHHHHHHhh
Confidence 99999999 666678999999999999999888655555444 3456777777776666543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=1.3e-17 Score=161.69 Aligned_cols=323 Identities=16% Similarity=0.130 Sum_probs=186.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHH
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLL 91 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (472)
||++...+..||+...+.|++.|.++||+|++++....... ... . .. .+++...+.. .......+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~---~~~----~-~~---~~~~~~~~~~--~~~~~~~~~~ 67 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA---RLV----P-KA---GIPLHTIPVG--GLRRKGSLKK 67 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh---hcc----c-cc---CCceEEEEec--CcCCCChHHH
Confidence 58999999999999999999999999999999987532100 000 0 00 1112222211 0111111111
Q ss_pred HHHHH--HHhHhhhhhhcC-CCCcEEEEcC-CChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCCCC
Q 012061 92 RWEAI--RRSAHLLAPLLS-PPLSALITDV-TLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVE 167 (472)
Q Consensus 92 ~~~~~--~~~~~~~~~ll~-~~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 167 (472)
+.... ......+.++++ .+||+|++.. +....+..+|+..|+|++......
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------------- 122 (350)
T cd03785 68 LKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------------- 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-------------------------
Confidence 11111 122234556677 8999999865 234445667888999987431100
Q ss_pred CCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCCCCCeeEecc
Q 012061 168 FDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAVGP 247 (472)
Q Consensus 168 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~vGp 247 (472)
.+ . ...+.. .+.++.+++.+-...+. . + ..++..+|+
T Consensus 123 -------~~-----------~-------~~~~~~------~~~~~~vi~~s~~~~~~--------~---~-~~~~~~i~n 159 (350)
T cd03785 123 -------VP-----------G-------LANRLL------ARFADRVALSFPETAKY--------F---P-KDKAVVTGN 159 (350)
T ss_pred -------Cc-----------c-------HHHHHH------HHhhCEEEEcchhhhhc--------C---C-CCcEEEECC
Confidence 00 0 001111 11244454443222211 0 1 236777776
Q ss_pred cCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCC-HHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhh
Q 012061 248 LLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALS-MEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNV 326 (472)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (472)
......... .. ..+.+...+++++|++..|+..... .+.+..++..+.+.+..+++++|. ...+++.+.
T Consensus 160 ~v~~~~~~~--~~---~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~-----g~~~~l~~~ 229 (350)
T cd03785 160 PVREEILAL--DR---ERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGK-----GDLEEVKKA 229 (350)
T ss_pred CCchHHhhh--hh---hHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCC-----ccHHHHHHH
Confidence 543221110 01 1222222344456666666653221 122334444444334455666665 122233222
Q ss_pred hhHHHHHHhhcCCceeccCC-ChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCC----cccchhhHHHHHhhCee
Q 012061 327 LGHELMEKIKDQGLVVKNWV-DQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPH----FGDQKINAEAVERAGLG 401 (472)
Q Consensus 327 ~p~~~~~~~~~~~~~~~~~~-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~G~G 401 (472)
.. +. .+|+++.+|+ +...+| +.++++|+++|.+|++||+++|+|+|+.|. ..+|..|+..+.+.|.|
T Consensus 230 ~~----~~--~~~v~~~g~~~~~~~~l--~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g 301 (350)
T cd03785 230 YE----EL--GVNYEVFPFIDDMAAAY--AAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAA 301 (350)
T ss_pred Hh----cc--CCCeEEeehhhhHHHHH--HhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCE
Confidence 11 11 3688988998 455777 556779999999999999999999999986 36789999999999999
Q ss_pred eEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012061 402 MWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKR 439 (472)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 439 (472)
..+ +....+++++.++|+++++|++.+++..+
T Consensus 302 ~~v------~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 333 (350)
T cd03785 302 VLI------PQEELTPERLAAALLELLSDPERLKAMAE 333 (350)
T ss_pred EEE------ecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999 55556899999999999998876644333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=4.4e-16 Score=150.75 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=73.0
Q ss_pred ChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc---ccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHH
Q 012061 347 DQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF---GDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLK 423 (472)
Q Consensus 347 pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~ 423 (472)
+...++ +.++++|+++|.++++||+++|+|+|+.|.. .+|..|+..+++.|.|..+ +....++++|.++
T Consensus 243 ~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~------~~~~~~~~~l~~~ 314 (348)
T TIGR01133 243 NMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVI------RQKELLPEKLLEA 314 (348)
T ss_pred CHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEE------ecccCCHHHHHHH
Confidence 456778 4566799999988999999999999999863 4788899999999999998 6666789999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHH
Q 012061 424 IKDLMANDFLREQAKRIEEEARK 446 (472)
Q Consensus 424 i~~~l~~~~~~~~a~~l~~~~~~ 446 (472)
+.++++|++.+++ +++..++
T Consensus 315 i~~ll~~~~~~~~---~~~~~~~ 334 (348)
T TIGR01133 315 LLKLLLDPANLEA---MAEAARK 334 (348)
T ss_pred HHHHHcCHHHHHH---HHHHHHh
Confidence 9999999877644 4444444
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=8.7e-17 Score=156.45 Aligned_cols=351 Identities=14% Similarity=0.045 Sum_probs=199.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHH
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFL 90 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (472)
.+|+|...++-||++|. +|+++|.++|++|+|++... ...++.|... .+++...+. ..+. ..+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg--~~m~~~g~~~---------~~~~~~l~v--~G~~--~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG--PRMAAEGCEV---------LYSMEELSV--MGLR--EVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc--HHHHhCcCcc---------ccChHHhhh--ccHH--HHHH
Confidence 47999999999999999 99999999999999998642 2344444311 011111110 0000 1112
Q ss_pred HHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhh--hHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCCCC
Q 012061 91 LRWEAIRRSAHLLAPLLS-PPLSALITDVTLISA--VLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVE 167 (472)
Q Consensus 91 ~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~--~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 167 (472)
.+ ..+........++++ .+||+||.-.+..+. ....|+.+|||++.+.+. -.
T Consensus 70 ~~-~~~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P-~~----------------------- 124 (385)
T TIGR00215 70 RL-GRLLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP-QV----------------------- 124 (385)
T ss_pred HH-HHHHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-cH-----------------------
Confidence 21 122223335566677 899999974423333 233788899998755311 00
Q ss_pred CCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCCCCCeeEecc
Q 012061 168 FDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAVGP 247 (472)
Q Consensus 168 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~vGp 247 (472)
+ .|. . ..+ +.+.+. ++.++ .+++ .+.... ... .-+..++|.
T Consensus 125 -----------w--aw~--~----~~~----r~l~~~------~d~v~-~~~~-~e~~~~---~~~-----g~~~~~vGn 165 (385)
T TIGR00215 125 -----------W--AWR--K----WRA----KKIEKA------TDFLL-AILP-FEKAFY---QKK-----NVPCRFVGH 165 (385)
T ss_pred -----------h--hcC--c----chH----HHHHHH------HhHhh-ccCC-CcHHHH---Hhc-----CCCEEEECC
Confidence 0 000 0 001 111111 11111 1222 222211 111 125567885
Q ss_pred cCCCCccC--CCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhC-----CCceEEEEeCCCCCcchh
Q 012061 248 LLPCEFEK--RDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSS-----GCRFLWVVKGKNVDKEDE 320 (472)
Q Consensus 248 l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~ 320 (472)
-..+.... ....+ ..+-+.-.+++++|.+..||....-......+++++..+ +.++++..... ...
T Consensus 166 Pv~~~~~~~~~~~~~---~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~----~~~ 238 (385)
T TIGR00215 166 PLLDAIPLYKPDRKS---AREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF----KRR 238 (385)
T ss_pred chhhhccccCCCHHH---HHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc----hhH
Confidence 54332211 11111 333333344566888888887543233444455444432 33454443331 111
Q ss_pred HHHHhhhhHHHHHHhh-cCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEec----CCcc---------
Q 012061 321 ESLKNVLGHELMEKIK-DQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVW----PHFG--------- 386 (472)
Q Consensus 321 ~~~~~~~p~~~~~~~~-~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~----P~~~--------- 386 (472)
+.+.. +.+... ...+.+..+ +...++ ++++++|+-+|..|+ |++++|+|+|++ |+..
T Consensus 239 ~~~~~-----~~~~~~~~~~v~~~~~-~~~~~l--~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~ 309 (385)
T TIGR00215 239 LQFEQ-----IKAEYGPDLQLHLIDG-DARKAM--FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKT 309 (385)
T ss_pred HHHHH-----HHHHhCCCCcEEEECc-hHHHHH--HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcC
Confidence 11111 111111 122222222 334567 557779999999988 999999999999 7642
Q ss_pred cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 012061 387 DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND----FLREQAKRIEEEARKAIGVGGSSERTFKELI 462 (472)
Q Consensus 387 DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (472)
+|..|+..++..|+...+ -...+|++.|.+.+.++|+|+ +++++.++--+++++..+++|.+.+..+.++
T Consensus 310 ~~~~~~nil~~~~~~pel------~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 310 DYISLPNILANRLLVPEL------LQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred CeeeccHHhcCCccchhh------cCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 388899999999999888 677899999999999999999 8887777777777777777788887777665
Q ss_pred H
Q 012061 463 D 463 (472)
Q Consensus 463 ~ 463 (472)
+
T Consensus 384 ~ 384 (385)
T TIGR00215 384 E 384 (385)
T ss_pred h
Confidence 4
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.75 E-value=1.2e-15 Score=149.49 Aligned_cols=169 Identities=22% Similarity=0.343 Sum_probs=114.4
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhC-CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH-
Q 012061 272 PEGSVVYVSFGSRLALSMEQTKELGDGLLSS-GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD- 349 (472)
Q Consensus 272 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~- 349 (472)
+++++|++..|+.+.. ..+..+++++.+. +.+++++.+. ++...+.+... .+.. .+++++.+|+++.
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~---~~~~~~~l~~~-----~~~~-~~~v~~~g~~~~~~ 268 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGK---NEALKQSLEDL-----QETN-PDALKVFGYVENID 268 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCC---CHHHHHHHHHH-----HhcC-CCcEEEEechhhHH
Confidence 4456788877887532 2345667777553 4566666554 11111112111 1111 2578888999875
Q ss_pred HHhcccCcCcEEeecCcchHHHHHHhCCcEEec-CCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHh
Q 012061 350 KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVW-PHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLM 428 (472)
Q Consensus 350 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 428 (472)
.+++. ++++|+..|..|++||+++|+|+|+. |..+.|..|+..+++.|+|+.. . +++++.++|.+++
T Consensus 269 ~l~~~--aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~------~----~~~~l~~~i~~ll 336 (380)
T PRK13609 269 ELFRV--TSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVI------R----DDEEVFAKTEALL 336 (380)
T ss_pred HHHHh--ccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEE------C----CHHHHHHHHHHHH
Confidence 78855 55699999988999999999999985 6777788999999999998876 2 5799999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 429 ANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 429 ~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
+|++.+++ +++..++ ...+.++++.++.+++.+..
T Consensus 337 ~~~~~~~~---m~~~~~~-~~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 337 QDDMKLLQ---MKEAMKS-LYLPEPADHIVDDILAENHV 371 (380)
T ss_pred CCHHHHHH---HHHHHHH-hCCCchHHHHHHHHHHhhhh
Confidence 99876644 4444443 34445777777777665543
No 37
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=2e-14 Score=140.71 Aligned_cols=170 Identities=14% Similarity=0.217 Sum_probs=116.5
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHh--CCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHh-hcCCceeccCCCh
Q 012061 272 PEGSVVYVSFGSRLALSMEQTKELGDGLLS--SGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKI-KDQGLVVKNWVDQ 348 (472)
Q Consensus 272 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~pq 348 (472)
+++++|+++.|+.+. ...+..+++++.+ .+.+++++.|. +. .+. +.+.+.. ..+++.+.+|+++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~---~~----~l~----~~l~~~~~~~~~v~~~G~~~~ 266 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGK---SK----ELK----RSLTAKFKSNENVLILGYTKH 266 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCC---CH----HHH----HHHHHHhccCCCeEEEeccch
Confidence 455688888898752 2334445555332 24566666554 11 111 1111111 1257888899975
Q ss_pred H-HHhcccCcCcEEeecCcchHHHHHHhCCcEEec-CCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHH
Q 012061 349 D-KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVW-PHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKD 426 (472)
Q Consensus 349 ~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~ 426 (472)
. .++ ..++++|+..|..|++||+++|+|+|+. |..++|..|+..+++.|+|+.. + +.+++.++|.+
T Consensus 267 ~~~~~--~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~------~----~~~~l~~~i~~ 334 (391)
T PRK13608 267 MNEWM--ASSQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIA------D----TPEEAIKIVAS 334 (391)
T ss_pred HHHHH--HhhhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEe------C----CHHHHHHHHHH
Confidence 5 677 4466699999889999999999999998 7777778999999999999887 3 68999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhccC
Q 012061 427 LMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCNNN 470 (472)
Q Consensus 427 ~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (472)
+++|++.+ +++++.+++. ....+..+.++.+++.+.....
T Consensus 335 ll~~~~~~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 335 LTNGNEQL---TNMISTMEQD-KIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HhcCHHHH---HHHHHHHHHh-cCCCCHHHHHHHHHHHhhhhhh
Confidence 99988654 4555555553 4456777777777776654433
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.67 E-value=5.9e-14 Score=126.60 Aligned_cols=335 Identities=18% Similarity=0.172 Sum_probs=188.0
Q ss_pred CCCCCCEEEEEcC--CCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchh-hhhhhhhhcCCCccceEEeecCC--
Q 012061 6 GFDSHPHVALIPS--AGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAET-QHVSHFLSAYPQVTAKRFHLLPF-- 78 (472)
Q Consensus 6 ~~~~~~~il~~~~--~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 78 (472)
...+.+||+|++. -+.||+...+.+|..|++. |.+|++++..+......- .|+ +.++ ++..
T Consensus 5 ~~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gV----------d~V~--LPsl~k 72 (400)
T COG4671 5 EASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGV----------DFVK--LPSLIK 72 (400)
T ss_pred chhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccC----------ceEe--cCceEe
Confidence 3455679999998 5889999999999999997 999999998765433322 332 1121 2221
Q ss_pred -CCCCCCCCChHHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhh
Q 012061 79 -DPNSANATDPFLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIV 156 (472)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 156 (472)
+.......+.-....+....-...+..-.+ .+||++|+|. +.+.. -.++ .|.. .|+.
T Consensus 73 ~~~G~~~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~-~P~Gl---r~EL-~ptL-------------~yl~--- 131 (400)
T COG4671 73 GDNGEYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDK-FPFGL---RFEL-LPTL-------------EYLK--- 131 (400)
T ss_pred cCCCceeeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEEEec-cccch---hhhh-hHHH-------------HHHh---
Confidence 111111111101112222222333444445 7999999999 65331 1111 0100 0000
Q ss_pred hccCCCCCCCCCCCCceeCCCCCCCCCCCCCCCcc--CCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhccc
Q 012061 157 ASKSTSSGSVEFDDDFIEIPGLPPIPLSSVPPAVM--DSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRR 234 (472)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 234 (472)
...+ ..+-++. ...+.+.... +..+...+.+.+.+ +.+++...+.+......
T Consensus 132 --~~~t----------~~vL~lr--~i~D~p~~~~~~w~~~~~~~~I~r~y------D~V~v~GdP~f~d~~~~------ 185 (400)
T COG4671 132 --TTGT----------RLVLGLR--SIRDIPQELEADWRRAETVRLINRFY------DLVLVYGDPDFYDPLTE------ 185 (400)
T ss_pred --hcCC----------cceeehH--hhhhchhhhccchhhhHHHHHHHHhh------eEEEEecCccccChhhc------
Confidence 0000 0000000 0011111111 01111122222222 34455554443322110
Q ss_pred ccCC----CCCeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHh-CCCc--eE
Q 012061 235 VVAG----LPPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLS-SGCR--FL 307 (472)
Q Consensus 235 ~~p~----~p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~~ 307 (472)
++. ..++.++|.+....+....+.. .. +++..|+||-|.-. ...+.+...++|-.. .+.+ .+
T Consensus 186 -~~~~~~i~~k~~ytG~vq~~~~~~~~p~~--------~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ 254 (400)
T COG4671 186 -FPFAPAIRAKMRYTGFVQRSLPHLPLPPH--------EA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWL 254 (400)
T ss_pred -CCccHhhhhheeEeEEeeccCcCCCCCCc--------CC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceE
Confidence 111 1268999998332111111111 11 44447888888753 246666666666554 3444 55
Q ss_pred EEEeCCCCCcchhHHHHhhhhHHHHHHh-----hcCCceeccCCChH-HHhcccCcCcEEeecCcchHHHHHHhCCcEEe
Q 012061 308 WVVKGKNVDKEDEESLKNVLGHELMEKI-----KDQGLVVKNWVDQD-KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLV 381 (472)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~ 381 (472)
.++|. .+|..-.+.. +.+++.+..|-.+. .++ ...+.+|+-||+||++|-|.+|+|.++
T Consensus 255 ivtGP-------------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll--~gA~~vVSm~GYNTvCeILs~~k~aLi 319 (400)
T COG4671 255 IVTGP-------------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLL--AGARLVVSMGGYNTVCEILSFGKPALI 319 (400)
T ss_pred EEeCC-------------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHH--HhhheeeecccchhhhHHHhCCCceEE
Confidence 55554 1333221111 23889998998766 666 456679999999999999999999999
Q ss_pred cCCc---ccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 382 WPHF---GDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 382 ~P~~---~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
+|.. .+|-.-|.|++++|.--.+ .+..++++.++++|...++-|
T Consensus 320 vPr~~p~eEQliRA~Rl~~LGL~dvL------~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 320 VPRAAPREEQLIRAQRLEELGLVDVL------LPENLTPQNLADALKAALARP 366 (400)
T ss_pred eccCCCcHHHHHHHHHHHhcCcceee------CcccCChHHHHHHHHhcccCC
Confidence 9987 4899999999999999888 788899999999999999733
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=9.3e-15 Score=143.23 Aligned_cols=352 Identities=14% Similarity=0.067 Sum_probs=176.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChH
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPF 89 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (472)
+|+|+++..+.-||++|.. ++++|.++++++.++.... +..+..+... .+++.. ++.....
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~-------l~~~g~~ 61 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG--PRMQAAGCES---------LFDMEE-------LAVMGLV 61 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc--HHHHhCCCcc---------ccCHHH-------hhhccHH
Confidence 4789999999999999999 9999999988888886532 1233322200 000111 1111111
Q ss_pred HHH--HHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhh--HHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCC
Q 012061 90 LLR--WEAIRRSAHLLAPLLS-PPLSALITDVTLISAV--LPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSG 164 (472)
Q Consensus 90 ~~~--~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~--~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 164 (472)
..+ ...+......+.++++ .+||+|++-.+...+. ...|++.|||++.+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~---------------------- 119 (380)
T PRK00025 62 EVLPRLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS---------------------- 119 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc----------------------
Confidence 111 1112223446677777 8999988643122233 344778899987542110
Q ss_pred CCCCCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCCCCCeeE
Q 012061 165 SVEFDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYA 244 (472)
Q Consensus 165 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~ 244 (472)
.+...+. . .+.+ .+.++.+++.+-. +... +... +. ++.+
T Consensus 120 -----------------~~~~~~~-------~-~~~~------~~~~d~i~~~~~~--~~~~---~~~~----g~-~~~~ 158 (380)
T PRK00025 120 -----------------VWAWRQG-------R-AFKI------AKATDHVLALFPF--EAAF---YDKL----GV-PVTF 158 (380)
T ss_pred -----------------hhhcCch-------H-HHHH------HHHHhhheeCCcc--CHHH---HHhc----CC-CeEE
Confidence 0000000 0 0011 1122333333321 1111 1111 11 3677
Q ss_pred ecccCCCCccC-CCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhC-----CCceEEEEeCCCCCcc
Q 012061 245 VGPLLPCEFEK-RDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSS-----GCRFLWVVKGKNVDKE 318 (472)
Q Consensus 245 vGpl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~~~~~~~~~~~~~ 318 (472)
+|....+.... ....+ +.+.+.-.+++++|.+..||...........++++++.+ +.+++|+.+. +.
T Consensus 159 ~G~p~~~~~~~~~~~~~---~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~----~~ 231 (380)
T PRK00025 159 VGHPLADAIPLLPDRAA---ARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVN----PK 231 (380)
T ss_pred ECcCHHHhcccccChHH---HHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC----hh
Confidence 77443322111 00111 333333333455677777776432222234444444321 3456665442 11
Q ss_pred hhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcc--------cchh
Q 012061 319 DEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFG--------DQKI 390 (472)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~ 390 (472)
..+.+..... ....-++.+.. -.-..++ +.++++|+.+|.+++ |++++|+|+|+.|-.. +|..
T Consensus 232 ~~~~~~~~~~-----~~~~~~v~~~~-~~~~~~~--~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~ 302 (380)
T PRK00025 232 RREQIEEALA-----EYAGLEVTLLD-GQKREAM--AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVK 302 (380)
T ss_pred hHHHHHHHHh-----hcCCCCeEEEc-ccHHHHH--HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHc
Confidence 1122221110 00001222221 1234666 556779999998887 9999999999985432 1212
Q ss_pred h-----HHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 391 N-----AEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 391 n-----a~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
| +..+++.|++..+ .....+++.+.+++.++++|++.+++..+-.+.+++.. ..+++.+.++.+.+.+
T Consensus 303 ~~~~~l~~~~~~~~~~~~~------~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 303 VPYVSLPNLLAGRELVPEL------LQEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred CCeeehHHHhcCCCcchhh------cCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 2 2222333333333 33567899999999999999988766555555555444 4456666666655544
Q ss_pred H
Q 012061 466 K 466 (472)
Q Consensus 466 ~ 466 (472)
.
T Consensus 376 ~ 376 (380)
T PRK00025 376 K 376 (380)
T ss_pred h
Confidence 3
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.64 E-value=2.2e-14 Score=133.21 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=75.0
Q ss_pred ceEEEeecccccCCHHHHHHHHHHHHhC--CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH-HH
Q 012061 275 SVVYVSFGSRLALSMEQTKELGDGLLSS--GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD-KV 351 (472)
Q Consensus 275 ~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~-~l 351 (472)
+.|+|+||.... ......++++|.+. +.++.+++|.. ....+++... ... .+|+.+..++++. .+
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~---~~~~~~l~~~-----~~~--~~~i~~~~~~~~m~~l 238 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSS---NPNLDELKKF-----AKE--YPNIILFIDVENMAEL 238 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCC---CcCHHHHHHH-----HHh--CCCEEEEeCHHHHHHH
Confidence 478999996632 22445566777653 45677778762 1122222211 111 2688888999876 88
Q ss_pred hcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHH
Q 012061 352 LSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEA 394 (472)
Q Consensus 352 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 394 (472)
+ +.++++||+|| +|++|++++|+|+|++|+..+|..||+.
T Consensus 239 m--~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 239 M--NEADLAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred H--HHCCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 8 45677999999 9999999999999999999999999975
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.59 E-value=1.6e-16 Score=136.37 Aligned_cols=138 Identities=22% Similarity=0.281 Sum_probs=96.1
Q ss_pred eEEEeecccccCC-HHHHHHHHHHHHhC--CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhh--cCCceeccCCC-hH
Q 012061 276 VVYVSFGSRLALS-MEQTKELGDGLLSS--GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIK--DQGLVVKNWVD-QD 349 (472)
Q Consensus 276 ~v~vs~GS~~~~~-~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~p-q~ 349 (472)
+|+|+.||.+... .+.+..+...+... ..+++++.|.. ..++.. . ... ..++.+.+|++ ..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~-----~~~~~~---~-----~~~~~~~~v~~~~~~~~m~ 67 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN-----NYEELK---I-----KVENFNPNVKVFGFVDNMA 67 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC-----ECHHHC---C-----CHCCTTCCCEEECSSSSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC-----cHHHHH---H-----HHhccCCcEEEEechhhHH
Confidence 5899999885421 22233344444332 46788888762 111111 0 111 15788889999 77
Q ss_pred HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcc----cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 350 KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFG----DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 350 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
.++.. ++++|||||.||++|++++|+|+|++|... ||..||..+++.|+|+.+ .....+++.|.++|.
T Consensus 68 ~~m~~--aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~------~~~~~~~~~L~~~i~ 139 (167)
T PF04101_consen 68 ELMAA--ADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIML------DESELNPEELAEAIE 139 (167)
T ss_dssp HHHHH--HSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCS------ECCC-SCCCHHHHHH
T ss_pred HHHHH--cCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcccc------CcccCCHHHHHHHHH
Confidence 88855 556999999999999999999999999998 999999999999999998 666677899999999
Q ss_pred HHhcCHHHH
Q 012061 426 DLMANDFLR 434 (472)
Q Consensus 426 ~~l~~~~~~ 434 (472)
+++.++..+
T Consensus 140 ~l~~~~~~~ 148 (167)
T PF04101_consen 140 ELLSDPEKL 148 (167)
T ss_dssp CHCCCHH-S
T ss_pred HHHcCcHHH
Confidence 999988653
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.56 E-value=3.5e-12 Score=124.75 Aligned_cols=174 Identities=17% Similarity=0.191 Sum_probs=110.8
Q ss_pred hhhhccCCCCCceEEEeecccccCCHH-HHHHHHHHHH-----hCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhc
Q 012061 264 ILKWLDDQPEGSVVYVSFGSRLALSME-QTKELGDGLL-----SSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKD 337 (472)
Q Consensus 264 ~~~~l~~~~~~~~v~vs~GS~~~~~~~-~~~~~~~al~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 337 (472)
+++-+.-.+++++|++..|+....... .+..+...+. ..+..++++.|. +. .+.+.+ .+....
T Consensus 196 ~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~---~~----~~~~~L----~~~~~~ 264 (382)
T PLN02605 196 LRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGR---NK----KLQSKL----ESRDWK 264 (382)
T ss_pred HHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECC---CH----HHHHHH----Hhhccc
Confidence 343344445566788777776543322 2233322220 123456677765 11 111111 111112
Q ss_pred CCceeccCCChH-HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccch-hhHHHHHhhCeeeEEeecCCCCcCCc
Q 012061 338 QGLVVKNWVDQD-KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQK-INAEAVERAGLGMWVRSWGWGTELRA 415 (472)
Q Consensus 338 ~~~~~~~~~pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~G~G~~l~~~~~~~~~~~ 415 (472)
.++.+.+|+++. .++ ..++++|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+.|.|+.+ -
T Consensus 265 ~~v~~~G~~~~~~~l~--~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~----------~ 332 (382)
T PLN02605 265 IPVKVRGFVTNMEEWM--GACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFS----------E 332 (382)
T ss_pred CCeEEEeccccHHHHH--HhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeec----------C
Confidence 467888999865 666 55677999999999999999999999998766675 799999999999766 2
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012061 416 KGDEIGLKIKDLMAN-DFLREQAKRIEEEARKAIGVGGSSERTFKELIDK 464 (472)
Q Consensus 416 ~~~~l~~~i~~~l~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (472)
+++++.++|.+++.| ++.+ +++++..++. ....++.+.++.+++.
T Consensus 333 ~~~~la~~i~~ll~~~~~~~---~~m~~~~~~~-~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 333 SPKEIARIVAEWFGDKSDEL---EAMSENALKL-ARPEAVFDIVHDLHEL 378 (382)
T ss_pred CHHHHHHHHHHHHcCCHHHH---HHHHHHHHHh-cCCchHHHHHHHHHHH
Confidence 789999999999987 6544 4445554443 3445666666555544
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.49 E-value=1.5e-11 Score=120.00 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=115.9
Q ss_pred CeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhC----CCceEEEEeCCCCC
Q 012061 241 PVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSS----GCRFLWVVKGKNVD 316 (472)
Q Consensus 241 ~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~~~~~~~~~~~ 316 (472)
++.++|-...+...... . . .-.+++++|.+-.||-.......+..+++++..+ +..|++.+.+.
T Consensus 181 k~~~vGnPv~d~l~~~~--~-----~--~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~--- 248 (396)
T TIGR03492 181 RASYLGNPMMDGLEPPE--R-----K--PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPS--- 248 (396)
T ss_pred eEEEeCcCHHhcCcccc--c-----c--ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCC---
Confidence 78999966554432110 0 0 1123445888888997443333344555555543 56777777331
Q ss_pred cchhHHHHhhhhH-HHHH---------HhhcCCceeccCCC-hHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc
Q 012061 317 KEDEESLKNVLGH-ELME---------KIKDQGLVVKNWVD-QDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF 385 (472)
Q Consensus 317 ~~~~~~~~~~~p~-~~~~---------~~~~~~~~~~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 385 (472)
.+.+.+...+.+ ++.. ....+++.+..+.. ...++ ..++++|+-+|..| .|++.+|+|+|++|+-
T Consensus 249 -~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~ 324 (396)
T TIGR03492 249 -LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEIL--HWADLGIAMAGTAT-EQAVGLGKPVIQLPGK 324 (396)
T ss_pred -CCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHH--HhCCEEEECcCHHH-HHHHHhCCCEEEEeCC
Confidence 222222222211 1100 00012344444543 34677 44667999999766 9999999999999987
Q ss_pred ccchhhHHHHHhh----CeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHH
Q 012061 386 GDQKINAEAVERA----GLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKEL 461 (472)
Q Consensus 386 ~DQ~~na~~v~~~----G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 461 (472)
..|. |+...++. |.++.+ .. .+.+.|.+++.++++|++.+++.. +..++..++++++.+.++.+
T Consensus 325 ~~q~-na~~~~~~~~l~g~~~~l------~~--~~~~~l~~~l~~ll~d~~~~~~~~---~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 325 GPQF-TYGFAEAQSRLLGGSVFL------AS--KNPEQAAQVVRQLLADPELLERCR---RNGQERMGPPGASARIAESI 392 (396)
T ss_pred CCHH-HHHHHHhhHhhcCCEEec------CC--CCHHHHHHHHHHHHcCHHHHHHHH---HHHHHhcCCCCHHHHHHHHH
Confidence 7776 99877774 777776 32 456999999999999987665444 23333345666666666555
Q ss_pred HH
Q 012061 462 ID 463 (472)
Q Consensus 462 ~~ 463 (472)
.+
T Consensus 393 ~~ 394 (396)
T TIGR03492 393 LK 394 (396)
T ss_pred HH
Confidence 43
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.39 E-value=9.7e-10 Score=106.60 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=97.9
Q ss_pred ceEEEeeccccc-CCHHHHHHHHHHHHhC-CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHH--
Q 012061 275 SVVYVSFGSRLA-LSMEQTKELGDGLLSS-GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDK-- 350 (472)
Q Consensus 275 ~~v~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~-- 350 (472)
+.+++..|+... ...+.+.+++..+... +..+ +++|.. ...+.+. ...+++.+.+|+++.+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l-~i~G~~----~~~~~~~----------~~~~~v~~~g~~~~~~~~ 261 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRL-VIVGDG----PARARLE----------ARYPNVHFLGFLDGEELA 261 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceE-EEEeCC----chHHHHh----------ccCCcEEEEeccCHHHHH
Confidence 356677777642 2345555555555432 3444 344431 1111111 1237889999998774
Q ss_pred -HhcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 351 -VLSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 351 -ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
++ ..++++|+.+. .++++||+++|+|+|+.+..+ +...+++.+.|... +. -+.+++.+++.
T Consensus 262 ~~~--~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~------~~--~~~~~l~~~i~ 327 (364)
T cd03814 262 AAY--ASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLV------EP--GDAEAFAAALA 327 (364)
T ss_pred HHH--HhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEc------CC--CCHHHHHHHHH
Confidence 56 44666887765 378999999999999987543 55566667889887 43 36788999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012061 426 DLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDK 464 (472)
Q Consensus 426 ~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (472)
+++.|++.+++..+-+.+.. ..-+..+.++.+++.
T Consensus 328 ~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 362 (364)
T cd03814 328 ALLADPELRRRMAARARAEA----ERRSWEAFLDNLLEA 362 (364)
T ss_pred HHHcCHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHh
Confidence 99999877654444443322 224555566666554
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.37 E-value=1.6e-09 Score=109.05 Aligned_cols=136 Identities=20% Similarity=0.134 Sum_probs=85.0
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhC-CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH---HH
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSS-GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD---KV 351 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~---~l 351 (472)
.+++..|+... ...+..++++++.. +.+++ ++|. +... +.+.+.....++.+.+++++. .+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~----G~~~--------~~l~~~~~~~~V~f~G~v~~~ev~~~ 328 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGD----GPYR--------EELEKMFAGTPTVFTGMLQGDELSQA 328 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeC----ChHH--------HHHHHHhccCCeEEeccCCHHHHHHH
Confidence 45556687642 33455677777665 44444 4443 1121 222223334678888999865 45
Q ss_pred hcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHh---hCeeeEEeecCCCCcCCcCHHHHHHHH
Q 012061 352 LSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVER---AGLGMWVRSWGWGTELRAKGDEIGLKI 424 (472)
Q Consensus 352 l~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~G~G~~l~~~~~~~~~~~~~~~l~~~i 424 (472)
+ ..+++||.-.. .+++.||+++|+|+|+.... .....++. -+.|..+ +.. +++++.++|
T Consensus 329 ~--~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~~~G~lv------~~~--d~~~la~~i 394 (465)
T PLN02871 329 Y--ASGDVFVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEGKTGFLY------TPG--DVDDCVEKL 394 (465)
T ss_pred H--HHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCCCceEEe------CCC--CHHHHHHHH
Confidence 5 44556885543 34689999999999987643 23334444 5778888 433 679999999
Q ss_pred HHHhcCHHHHHHHHHH
Q 012061 425 KDLMANDFLREQAKRI 440 (472)
Q Consensus 425 ~~~l~~~~~~~~a~~l 440 (472)
.++++|++.+++..+-
T Consensus 395 ~~ll~~~~~~~~~~~~ 410 (465)
T PLN02871 395 ETLLADPELRERMGAA 410 (465)
T ss_pred HHHHhCHHHHHHHHHH
Confidence 9999988765443333
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.27 E-value=1.4e-12 Score=108.38 Aligned_cols=116 Identities=23% Similarity=0.220 Sum_probs=75.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCC-ChHHH
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANAT-DPFLL 91 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (472)
|+|++.|+.||++|+++||++|++|||+|++++++.+++.+++.|+ + +...+.+ ..++.. .....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl-~------------~~~~~~~-~~~~~~~~~~~~ 66 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGL-E------------FVPIPGD-SRLPRSLEPLAN 66 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT--E------------EEESSSC-GGGGHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCc-e------------EEEecCC-cCcCcccchhhh
Confidence 7899999999999999999999999999999999999888888875 1 2222111 011110 00011
Q ss_pred ----------HHHHHHHhHhhhhhhcC-----CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccH
Q 012061 92 ----------RWEAIRRSAHLLAPLLS-----PPLSALITDVTLISAVLPVTINLHLPNYVLFTASA 143 (472)
Q Consensus 92 ----------~~~~~~~~~~~~~~ll~-----~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~ 143 (472)
+............+.+. ...|+++.+. ....+..+|+++|||++.....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 67 LRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAP-LAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHH-HHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhh-hcCccceeEhhhCchHHHHhhCCc
Confidence 00111111112223322 2688888888 787899999999999998876653
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.21 E-value=3.9e-08 Score=96.91 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=62.8
Q ss_pred CCceeccCCChHHH---hcccCcCcEEeec---C-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 338 QGLVVKNWVDQDKV---LSHRAVGGFVSHG---G-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 338 ~~~~~~~~~pq~~l---l~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
+++.+.+|+|+.++ +.. ++++++.. | ..++.||+++|+|+|+.... .....+++.+.|..+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~--adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~~~g~~~------ 350 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRA--ADVFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDGVTGLLV------ 350 (398)
T ss_pred ceEEEeccCCHHHHHHHHHh--CCEEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCCCCeEEe------
Confidence 67889999998754 644 55677542 2 36899999999999987643 355556666789888
Q ss_pred CcCCcCHHHHHHHHHHHhcCHHHHH
Q 012061 411 TELRAKGDEIGLKIKDLMANDFLRE 435 (472)
Q Consensus 411 ~~~~~~~~~l~~~i~~~l~~~~~~~ 435 (472)
+.. +.+++.++|.++++|++.++
T Consensus 351 ~~~--~~~~l~~~i~~l~~~~~~~~ 373 (398)
T cd03800 351 DPR--DPEALAAALRRLLTDPALRR 373 (398)
T ss_pred CCC--CHHHHHHHHHHHHhCHHHHH
Confidence 433 68999999999999876553
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.19 E-value=3.2e-08 Score=96.67 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=86.7
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHHhC-CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHH-
Q 012061 274 GSVVYVSFGSRLA-LSMEQTKELGDGLLSS-GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDK- 350 (472)
Q Consensus 274 ~~~v~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~- 350 (472)
++.+++..|+... ...+.+.+++..+.+. +.++ +++|. +...+.+.. +......+|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l-~i~G~----~~~~~~~~~-----~~~~~~~~~v~~~g~~~~~~~ 288 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRF-LIVGD----GPEKEELKE-----LAKALGLDNVTFLGRVPKEEL 288 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEE-EEeCC----cccHHHHHH-----HHHHcCCCcEEEeCCCChHHH
Confidence 3467777787743 2345555555555443 4444 33443 122111111 11112237888889998764
Q ss_pred --HhcccCcCcEEeecCc---------chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHH
Q 012061 351 --VLSHRAVGGFVSHGGW---------NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDE 419 (472)
Q Consensus 351 --ll~~~~~~~~I~HgG~---------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~ 419 (472)
++.. ++++|..... +++.||+++|+|+|+.+..+.+.. +...+.|..+ +.. +.++
T Consensus 289 ~~~~~~--~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~~~g~~~------~~~--~~~~ 354 (394)
T cd03794 289 PELLAA--ADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEAGAGLVV------PPG--DPEA 354 (394)
T ss_pred HHHHHh--hCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccCCcceEe------CCC--CHHH
Confidence 5544 5557754332 347999999999999987654433 3333777777 433 7899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 012061 420 IGLKIKDLMANDFLREQAKRIEE 442 (472)
Q Consensus 420 l~~~i~~~l~~~~~~~~a~~l~~ 442 (472)
+.++|.++++|++.+++..+-+.
T Consensus 355 l~~~i~~~~~~~~~~~~~~~~~~ 377 (394)
T cd03794 355 LAAAILELLDDPEERAEMGENGR 377 (394)
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 99999999988876654444333
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=8.1e-09 Score=91.02 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=105.3
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhh-cCCceeccCCC-hHHHhc
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIK-DQGLVVKNWVD-QDKVLS 353 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~p-q~~ll~ 353 (472)
-|+|++|.. .+....-+++..|.+.++.+-++++.. + . .+ .....+.+ .+|+.+..... ...++
T Consensus 160 ~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~--~-p---~l-----~~l~k~~~~~~~i~~~~~~~dma~LM- 225 (318)
T COG3980 160 DILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSS--N-P---TL-----KNLRKRAEKYPNINLYIDTNDMAELM- 225 (318)
T ss_pred eEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCC--C-c---ch-----hHHHHHHhhCCCeeeEecchhHHHHH-
Confidence 599999865 234466778888988877776677641 1 1 11 12222332 36776655555 45778
Q ss_pred ccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHH
Q 012061 354 HRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFL 433 (472)
Q Consensus 354 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 433 (472)
..+++.|+-+|. |+.|++.-|+|.+++|+...|-.-|...+.+|+-..+ +.. ++++....-+.++..|...
T Consensus 226 -ke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l------~~~-l~~~~~~~~~~~i~~d~~~ 296 (318)
T COG3980 226 -KEADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQL------GYH-LKDLAKDYEILQIQKDYAR 296 (318)
T ss_pred -Hhcchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhc------cCC-CchHHHHHHHHHhhhCHHH
Confidence 456779998875 8999999999999999999999999999999998888 544 6778888888889888887
Q ss_pred HHHHHHHHHH
Q 012061 434 REQAKRIEEE 443 (472)
Q Consensus 434 ~~~a~~l~~~ 443 (472)
|++.-.-++.
T Consensus 297 rk~l~~~~~~ 306 (318)
T COG3980 297 RKNLSFGSKL 306 (318)
T ss_pred hhhhhhccce
Confidence 7665554443
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.18 E-value=1e-07 Score=92.11 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=63.4
Q ss_pred cCCceeccCCChH---HHhcccCcCcEEee----cCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecC
Q 012061 337 DQGLVVKNWVDQD---KVLSHRAVGGFVSH----GGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWG 408 (472)
Q Consensus 337 ~~~~~~~~~~pq~---~ll~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 408 (472)
.+++.+.+++++. .+++. ++++|+. .|. .++.||+++|+|+|+.+. ..+...+...+.|..+
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~--ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~~~g~~~---- 311 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAE--IDVLVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDGVNGLLF---- 311 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHh--CCEEEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCCCcEEEE----
Confidence 3788888999866 44644 5557742 333 479999999999999754 3455566666678888
Q ss_pred CCCcCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 012061 409 WGTELRAKGDEIGLKIKDLMANDFLREQAK 438 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 438 (472)
+.. +.+++.+++.++++|++.+++..
T Consensus 312 --~~~--d~~~l~~~i~~l~~~~~~~~~~~ 337 (359)
T cd03823 312 --PPG--DAEDLAAALERLIDDPDLLERLR 337 (359)
T ss_pred --CCC--CHHHHHHHHHHHHhChHHHHHHH
Confidence 433 58999999999999886554433
No 51
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.18 E-value=1.3e-07 Score=93.19 Aligned_cols=86 Identities=17% Similarity=0.082 Sum_probs=60.7
Q ss_pred cCCceeccCCChHH---HhcccCcCcEEe---ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCC
Q 012061 337 DQGLVVKNWVDQDK---VLSHRAVGGFVS---HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGW 409 (472)
Q Consensus 337 ~~~~~~~~~~pq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 409 (472)
.+++.+.+++|+.+ +++.++ ++|. +.|. .++.||+++|+|+|+.. .......+..-..|..+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~ad--v~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~~~G~lv----- 348 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSD--VHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDGENGLLV----- 348 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCc--EEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccCCceEEc-----
Confidence 36888999999875 454444 4653 2232 48999999999999864 33444555554578777
Q ss_pred CCcCCcCHHHHHHHHHHHhcCHHHHHH
Q 012061 410 GTELRAKGDEIGLKIKDLMANDFLREQ 436 (472)
Q Consensus 410 ~~~~~~~~~~l~~~i~~~l~~~~~~~~ 436 (472)
+. -++++++++|.++++|++.+++
T Consensus 349 -~~--~d~~~la~~i~~ll~~~~~~~~ 372 (396)
T cd03818 349 -DF--FDPDALAAAVIELLDDPARRAR 372 (396)
T ss_pred -CC--CCHHHHHHHHHHHHhCHHHHHH
Confidence 43 3689999999999999865543
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.18 E-value=1.1e-07 Score=92.39 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=81.2
Q ss_pred ceEEEeeccccc-CCHHHHHHHHHHHHh--CCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhh-cCCceeccCCChHH
Q 012061 275 SVVYVSFGSRLA-LSMEQTKELGDGLLS--SGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIK-DQGLVVKNWVDQDK 350 (472)
Q Consensus 275 ~~v~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~pq~~ 350 (472)
+.+++..|+... ...+.+..++..+.. .+.++++.-+. ...+.+.. ..+... .+++.+.+++|+.+
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~-----~~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~ 271 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG-----PEREELEE-----LARELGLADRVIFTGFVPREE 271 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC-----chHHHHHH-----HHHHcCCCCcEEEeccCChHH
Confidence 356666777643 234555555555544 33444433222 12111111 111111 36888889998764
Q ss_pred ---HhcccCcCcEEeec----CcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHH
Q 012061 351 ---VLSHRAVGGFVSHG----GWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLK 423 (472)
Q Consensus 351 ---ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~ 423 (472)
++.. ++++|..+ ..+++.||+++|+|+|+... ...+..++..+.|..+ +... . ++.++
T Consensus 272 ~~~~~~~--ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~~~g~~~------~~~~--~-~~~~~ 336 (374)
T cd03817 272 LPDYYKA--ADLFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADGENGFLF------PPGD--E-ALAEA 336 (374)
T ss_pred HHHHHHH--cCEEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecCceeEEe------CCCC--H-HHHHH
Confidence 5655 44577443 34789999999999999753 3455666666788888 4322 2 89999
Q ss_pred HHHHhcCHHHH
Q 012061 424 IKDLMANDFLR 434 (472)
Q Consensus 424 i~~~l~~~~~~ 434 (472)
+.++++|++.+
T Consensus 337 i~~l~~~~~~~ 347 (374)
T cd03817 337 LLRLLQDPELR 347 (374)
T ss_pred HHHHHhChHHH
Confidence 99999988644
No 53
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.16 E-value=2.4e-08 Score=97.30 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=75.3
Q ss_pred CCceeccCCChH---HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCC
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELR 414 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~ 414 (472)
+++++.+.+++. .++ .+++++|+-.|.. +.||+++|+|+|.++-.++++. +.+.|.+..+ .
T Consensus 255 ~~v~~~~~~~~~~~~~~l--~~ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv------~--- 318 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLA--ANSHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLV------G--- 318 (365)
T ss_pred CCEEEECCCChHHHHHHH--HhCCEEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEe------C---
Confidence 578877777654 445 4566799977644 7999999999999976666552 3346777666 3
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 415 AKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 415 ~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
.++++|.+++.++++|++.+++..+-. ...++|+++.+.++.+.+
T Consensus 319 ~d~~~i~~ai~~ll~~~~~~~~~~~~~----~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 319 TDKENITKAAKRLLTDPDEYKKMSNAS----NPYGDGEASERIVEELLN 363 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHHHhhhcC----CCCcCchHHHHHHHHHHh
Confidence 278999999999999987775544322 224667777777766654
No 54
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.14 E-value=3.4e-07 Score=90.82 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCceeccCCChH---HHhcccCcCcEEeecCc------chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecC
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSHGGW------NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWG 408 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 408 (472)
+|+.+.+|+|+. .+++.+++.++.+..+. +.+.|++++|+|+|+....+.. ....+. +.|+.+
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~---- 355 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCV---- 355 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEe----
Confidence 578888999876 45766666444444332 2368999999999998654321 112233 788888
Q ss_pred CCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 409 WGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
+. -+.++++++|.++++|++.+++..+-+ ++.+.+.=+....++.+++.+.+
T Consensus 356 --~~--~d~~~la~~i~~l~~~~~~~~~~~~~a---~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 356 --EP--ESVEALVAAIAALARQALLRPKLGTVA---REYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred --CC--CCHHHHHHHHHHHHhCHHHHHHHHHHH---HHHHHHHcCHHHHHHHHHHHHHH
Confidence 43 368999999999998876553333322 22222222555566666655543
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.12 E-value=1.6e-07 Score=90.70 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=73.9
Q ss_pred cCCceeccCCChH---HHhcccCcCcEEe----ecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCC
Q 012061 337 DQGLVVKNWVDQD---KVLSHRAVGGFVS----HGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGW 409 (472)
Q Consensus 337 ~~~~~~~~~~pq~---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 409 (472)
.+++.+.+++++. .++.. ++++|. -|..+++.||+++|+|+|+.+. ...+..+++.+.|...
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~--~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~----- 323 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAA--ADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLV----- 323 (374)
T ss_pred CcceEEEeccChhhHHHHHHh--cCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEe-----
Confidence 4788888999755 55644 555774 3456799999999999999765 4456666667788888
Q ss_pred CCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhccCCChHHHHHHHHHH
Q 012061 410 GTELRAKGDEIGLKIKDLMANDFLREQAKRIEE-EARKAIGVGGSSERTFKELIDK 464 (472)
Q Consensus 410 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~-~~~~~~~~~g~~~~~~~~~~~~ 464 (472)
+.. +++++.++|.++++|++.+++..+-+. .+.+ .=+-.+..+++++.
T Consensus 324 -~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 372 (374)
T cd03801 324 -PPG--DPEALAEAILRLLDDPELRRRLGEAARERVAE----RFSWDRVAARTEEV 372 (374)
T ss_pred -CCC--CHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHh
Confidence 332 589999999999998876543333322 2222 23545555555543
No 56
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.10 E-value=3.4e-08 Score=96.16 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=97.7
Q ss_pred CCceEEEeecccccC-CHHHHHHHHHHHHhCCC-ceEEEEeCCCCCcchhHHHHhhhhHHHHHHhh--cCCceeccCCCh
Q 012061 273 EGSVVYVSFGSRLAL-SMEQTKELGDGLLSSGC-RFLWVVKGKNVDKEDEESLKNVLGHELMEKIK--DQGLVVKNWVDQ 348 (472)
Q Consensus 273 ~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~pq 348 (472)
+++.|++++|..... ..+.+..+++++..... ++.++.... +...+.+.+.. .... .+++.+.+..++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~---~~~~~~l~~~~-----~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH---PRTRPRIREAG-----LEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC---CChHHHHHHHH-----HhhccCCCCEEEECCcCH
Confidence 345788888876543 35667788888876533 244444331 11112222211 1111 367777776665
Q ss_pred HHHhc-ccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHH
Q 012061 349 DKVLS-HRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 349 ~~ll~-~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
..+.. ...+++||+-.| |.+.|++++|+|+|+++.. |. +..+.+.|+++.+ .. +.++|.+++.++
T Consensus 269 ~~~~~l~~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~g~~~~~------~~---~~~~i~~~i~~l 334 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVESGTNVLV------GT---DPEAILAAIEKL 334 (363)
T ss_pred HHHHHHHHcCcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhheeeEEec------CC---CHHHHHHHHHHH
Confidence 53322 255777999999 7888999999999998743 22 4456667877766 31 489999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHhccCCChHHHHH
Q 012061 428 MANDFLREQAKRIEEEARKAIGVGGSSERTFK 459 (472)
Q Consensus 428 l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 459 (472)
++|+..+++.+ ....++|.++.+.++
T Consensus 335 l~~~~~~~~~~------~~~~~~~~a~~~I~~ 360 (363)
T cd03786 335 LSDEFAYSLMS------INPYGDGNASERIVE 360 (363)
T ss_pred hcCchhhhcCC------CCCCCCCHHHHHHHH
Confidence 99876554432 223455666555544
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.06 E-value=4.8e-07 Score=87.10 Aligned_cols=142 Identities=19% Similarity=0.179 Sum_probs=82.8
Q ss_pred CceEEEeecccccC-CHHHHHHHHHHHHh--CCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH-
Q 012061 274 GSVVYVSFGSRLAL-SMEQTKELGDGLLS--SGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD- 349 (472)
Q Consensus 274 ~~~v~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~- 349 (472)
++.+++..|+.... ..+.+.+++..+.+ .+.+++ ++|.. ...+..... .........++.+.++..+.
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~-i~G~~----~~~~~~~~~---~~~~~~~~~~v~~~g~~~~~~ 258 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLL-LVGDG----DEENPAAIL---EIEKLGLEGRVEFLGFRDDVP 258 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEE-EEcCC----CcchhhHHH---HHHhcCCcceEEEeeccccHH
Confidence 34677778877432 35555555555543 234443 34431 110000000 00011113577777775433
Q ss_pred HHhcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 350 KVLSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 350 ~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
.++.. ++++|.-.. .+++.||+++|+|+|+.+.. .+...+++.+.|..+ +. -+++++.+++.
T Consensus 259 ~~~~~--adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~~~g~~~------~~--~~~~~~~~~i~ 324 (359)
T cd03808 259 ELLAA--ADVFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDGVNGFLV------PP--GDAEALADAIE 324 (359)
T ss_pred HHHHh--ccEEEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcCcceEEE------CC--CCHHHHHHHHH
Confidence 66754 455776543 57899999999999997543 344555556778877 33 26899999999
Q ss_pred HHhcCHHHHHHH
Q 012061 426 DLMANDFLREQA 437 (472)
Q Consensus 426 ~~l~~~~~~~~a 437 (472)
+++.|++.+++.
T Consensus 325 ~l~~~~~~~~~~ 336 (359)
T cd03808 325 RLIEDPELRARM 336 (359)
T ss_pred HHHhCHHHHHHH
Confidence 999988655443
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.04 E-value=1.5e-06 Score=86.16 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=56.6
Q ss_pred CCceec-cCCChHH---HhcccCcCcEEe-e---cC---cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEee
Q 012061 338 QGLVVK-NWVDQDK---VLSHRAVGGFVS-H---GG---WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRS 406 (472)
Q Consensus 338 ~~~~~~-~~~pq~~---ll~~~~~~~~I~-H---gG---~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~ 406 (472)
+++++. +|+|..+ +|+ .++++|. + -| -+++.||+++|+|+|+... ......+++.+.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~--~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~~~G~lv-- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLA--SADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHGENGLVF-- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHH--hCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCCCCEEEE--
Confidence 455544 6888664 454 4455763 1 12 3479999999999999643 3455566666789888
Q ss_pred cCCCCcCCcCHHHHHHHHHHHhcC---HHHH
Q 012061 407 WGWGTELRAKGDEIGLKIKDLMAN---DFLR 434 (472)
Q Consensus 407 ~~~~~~~~~~~~~l~~~i~~~l~~---~~~~ 434 (472)
+ ++++++++|.++++| ++.+
T Consensus 366 ----~----d~~~la~~i~~ll~~~~~~~~~ 388 (415)
T cd03816 366 ----G----DSEELAEQLIDLLSNFPNRGKL 388 (415)
T ss_pred ----C----CHHHHHHHHHHHHhcCCCHHHH
Confidence 4 689999999999998 6544
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.03 E-value=6.2e-07 Score=87.15 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCceeccCCC-hH---HHhcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCC
Q 012061 338 QGLVVKNWVD-QD---KVLSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGW 409 (472)
Q Consensus 338 ~~~~~~~~~p-q~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 409 (472)
.++.+.+|++ +. .++ ..++++|.-.. .++++||+++|+|+|+.... .....+...+.|..+
T Consensus 244 ~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~~~g~~~----- 312 (365)
T cd03825 244 FPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHGVTGYLA----- 312 (365)
T ss_pred CceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCCCceEEe-----
Confidence 5678889998 44 456 44566887543 47999999999999987543 222333444567777
Q ss_pred CCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 410 GTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 410 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+. .+.+++.+++.++++|++.+++ +++..++.....=+.+...+++++-+.
T Consensus 313 -~~--~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 313 -KP--GDPEDLAEGIEWLLADPDEREE---LGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred -CC--CCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 32 3689999999999998864432 222222222223455666666666554
No 60
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.03 E-value=4e-07 Score=90.60 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=53.1
Q ss_pred cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012061 364 GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKR 439 (472)
Q Consensus 364 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 439 (472)
+|..+++||+++|+|+|+-|..+++......+.+.|+++.. . +++++.++|.++++|++.+++..+
T Consensus 332 ~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~------~----d~~~La~~l~~ll~~~~~~~~m~~ 397 (425)
T PRK05749 332 RGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQV------E----DAEDLAKAVTYLLTDPDARQAYGE 397 (425)
T ss_pred CCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEE------C----CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34456999999999999999988888888877777877666 2 679999999999999876644333
No 61
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.02 E-value=1.3e-06 Score=85.15 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=70.3
Q ss_pred CCceeccCCChH-HHhcccCcCcEEee----cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCc
Q 012061 338 QGLVVKNWVDQD-KVLSHRAVGGFVSH----GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~~~~pq~-~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 412 (472)
+++.+.++.++. .+++. ++++|.- |...++.||+++|+|+|+... ...+..+++...|..+ +.
T Consensus 253 ~~v~~~g~~~~~~~~~~~--~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~~~G~~~------~~ 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSI--ADLFLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHGETGFLV------DV 320 (371)
T ss_pred ceEEEecCcccHHHHHHh--cCEEEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCCCceEEc------CC
Confidence 567777877654 66644 5557733 334699999999999999643 3455555555678777 43
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
-+.+++.+++.++++|++.+++..+-+... +...=+....++.+.+.+
T Consensus 321 --~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y 368 (371)
T cd04962 321 --GDVEAMAEYALSLLEDDELWQEFSRAARNR---AAERFDSERIVPQYEALY 368 (371)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHH
Confidence 268999999999999886554433333322 112234445555555444
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.96 E-value=3.4e-06 Score=83.04 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=58.6
Q ss_pred CCceeccCCChH---HHhcccCcCcEEeec---C-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSHG---G-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
+++.+.+++|.. .++.. +++++... | ..+++||+++|+|+|+.-..+ ....+...+.|...
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~--ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~------ 347 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSS--ARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLC------ 347 (392)
T ss_pred ceEEEeCCCChHHHHHHHhh--CeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEe------
Confidence 688999999977 45644 44466432 2 257899999999999974332 33445554677777
Q ss_pred CcCCcCHHHHHHHHHHHhcCHHHHH
Q 012061 411 TELRAKGDEIGLKIKDLMANDFLRE 435 (472)
Q Consensus 411 ~~~~~~~~~l~~~i~~~l~~~~~~~ 435 (472)
+. ++++++++|.++++|++.++
T Consensus 348 ~~---~~~~~a~~i~~l~~~~~~~~ 369 (392)
T cd03805 348 EP---TPEEFAEAMLKLANDPDLAD 369 (392)
T ss_pred CC---CHHHHHHHHHHHHhChHHHH
Confidence 32 68999999999999886443
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.95 E-value=3.6e-06 Score=83.25 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=71.6
Q ss_pred CCceeccCCChH---HHhcccCcCcEEe---ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVS---HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
+++.+.++++.. .+++. ++++|. +-|. .+++||+++|+|+|+.... .....+.+.+.|..+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~--ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~~~g~~~------ 350 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRA--ADVVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADGETGLLV------ 350 (405)
T ss_pred ceEEECCCCCHHHHHHHHHh--CCEEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccCCceEEC------
Confidence 578898999865 55754 455764 2333 5899999999999997543 344455555678777
Q ss_pred CcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 411 TELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 411 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+. -+.++++++|.++++|++.+++..+-+....+ .=+-.+.++++++-+.
T Consensus 351 ~~--~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~----~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 351 DG--HDPADWADALARLLDDPRTRIRMGAAAVEHAA----GFSWAATADGLLSSYR 400 (405)
T ss_pred CC--CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 43 36899999999999987665444333332211 1244445555555443
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.94 E-value=2.9e-06 Score=82.14 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=82.1
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhCC-CceEEEEeCCCCCcchhHHHHhhhhHHHHHHh-hcCCceeccCCChH---H
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSSG-CRFLWVVKGKNVDKEDEESLKNVLGHELMEKI-KDQGLVVKNWVDQD---K 350 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~pq~---~ 350 (472)
.+++..|+... ...+..+++++++.. .+++++ |. +...+.+.. ..+.. ..+|+.+.+|+|+. .
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~-G~----g~~~~~~~~-----~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIV-GE----GPLEAELEA-----LAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEE-eC----ChhHHHHHH-----HHHhcCCcceEEEcCCCCHHHHHH
Confidence 56667777642 334555667776665 444333 32 122111111 11111 24789999999976 4
Q ss_pred HhcccCcCcEE--e---ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHh-hCeeeEEeecCCCCcCCcCHHHHHHH
Q 012061 351 VLSHRAVGGFV--S---HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVER-AGLGMWVRSWGWGTELRAKGDEIGLK 423 (472)
Q Consensus 351 ll~~~~~~~~I--~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~G~G~~l~~~~~~~~~~~~~~~l~~~ 423 (472)
+++. ++++| + +-|. .+++||+++|+|+|+....+... .+.. .+.|... +. -+.+++.++
T Consensus 260 ~~~~--ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~~~g~~~------~~--~d~~~~~~~ 325 (357)
T cd03795 260 LLAA--CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHGVTGLVV------PP--GDPAALAEA 325 (357)
T ss_pred HHHh--CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCCCceEEe------CC--CCHHHHHHH
Confidence 5543 45566 2 2344 47999999999999976554443 3333 5778777 32 378999999
Q ss_pred HHHHhcCHHHHHH
Q 012061 424 IKDLMANDFLREQ 436 (472)
Q Consensus 424 i~~~l~~~~~~~~ 436 (472)
|.++++|++.+++
T Consensus 326 i~~l~~~~~~~~~ 338 (357)
T cd03795 326 IRRLLEDPELRER 338 (357)
T ss_pred HHHHHHCHHHHHH
Confidence 9999999865543
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.93 E-value=3.1e-06 Score=81.95 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=61.1
Q ss_pred cCCceeccCCChH---HHhcccCcCcEEe----ecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCC
Q 012061 337 DQGLVVKNWVDQD---KVLSHRAVGGFVS----HGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGW 409 (472)
Q Consensus 337 ~~~~~~~~~~pq~---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 409 (472)
.+++.+.+++++. .++.. ++++|. -|..+++.||+++|+|+|+.+.. .....++..+.|...
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~--ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~~~g~~~----- 326 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAA--ADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDGENGLLV----- 326 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHh--cCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCCcceeEE-----
Confidence 3688888999876 44544 455663 24567899999999999987543 345556666777777
Q ss_pred CCcCCcCHHHHHHHHHHHhcCHHH
Q 012061 410 GTELRAKGDEIGLKIKDLMANDFL 433 (472)
Q Consensus 410 ~~~~~~~~~~l~~~i~~~l~~~~~ 433 (472)
+. -+.+++.+++.++++++..
T Consensus 327 -~~--~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 327 -PP--GDPEALAEAILRLLADPWL 347 (377)
T ss_pred -CC--CCHHHHHHHHHHHhcCcHH
Confidence 33 3789999999999998774
No 66
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.93 E-value=3.4e-06 Score=80.81 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=62.9
Q ss_pred CCceeccCCC-hHHHhcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHhhC-eeeEEeecCCCC
Q 012061 338 QGLVVKNWVD-QDKVLSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAG-LGMWVRSWGWGT 411 (472)
Q Consensus 338 ~~~~~~~~~p-q~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~ 411 (472)
.++.+.++.. -..++.. ++++|.-.. .++++||+++|+|+|+.+..+.+ ..+.+.| .|..+ +
T Consensus 235 ~~v~~~g~~~~~~~~~~~--ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~------~ 302 (348)
T cd03820 235 DRVILLGFTKNIEEYYAK--ASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLV------P 302 (348)
T ss_pred CeEEEcCCcchHHHHHHh--CCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEe------C
Confidence 5666767633 3366754 555776542 46899999999999987654433 3344555 78877 4
Q ss_pred cCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 012061 412 ELRAKGDEIGLKIKDLMANDFLREQAKRIEEE 443 (472)
Q Consensus 412 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~ 443 (472)
. .+.+++.++|.++++|++.+++..+-++.
T Consensus 303 ~--~~~~~~~~~i~~ll~~~~~~~~~~~~~~~ 332 (348)
T cd03820 303 N--GDVEALAEALLRLMEDEELRKRMGANARE 332 (348)
T ss_pred C--CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3 35799999999999999877655554443
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.93 E-value=4e-06 Score=81.30 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=61.0
Q ss_pred cCCceeccCCChHH---HhcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCC
Q 012061 337 DQGLVVKNWVDQDK---VLSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGW 409 (472)
Q Consensus 337 ~~~~~~~~~~pq~~---ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 409 (472)
.+++.+.+|+++.+ ++.. ++++|.-.- .+++.||+++|+|+|+.+.. .....+.. +.|...
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~--adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~-~~~~~~----- 328 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALAD--ADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY-GCGWVV----- 328 (375)
T ss_pred cceEEEcCCCChHHHHHHHhh--CCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc-CceEEe-----
Confidence 37888999999654 4644 444664332 46899999999999997533 34444555 788777
Q ss_pred CCcCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012061 410 GTELRAKGDEIGLKIKDLMANDFLREQAKR 439 (472)
Q Consensus 410 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 439 (472)
+. +.+++.++|.++++|++.+++..+
T Consensus 329 -~~---~~~~~~~~i~~l~~~~~~~~~~~~ 354 (375)
T cd03821 329 -DD---DVDALAAALRRALELPQRLKAMGE 354 (375)
T ss_pred -CC---ChHHHHHHHHHHHhCHHHHHHHHH
Confidence 43 349999999999998755544333
No 68
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.87 E-value=1.5e-06 Score=84.57 Aligned_cols=84 Identities=23% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCceeccCCChHH---HhcccCcCcEEeec----------CcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEE
Q 012061 338 QGLVVKNWVDQDK---VLSHRAVGGFVSHG----------GWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWV 404 (472)
Q Consensus 338 ~~~~~~~~~pq~~---ll~~~~~~~~I~Hg----------G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l 404 (472)
+++.+.+++|+.+ +++. ++++|.-. -.+++.||+++|+|+|+-+.. .++..+.+.+.|..+
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~--ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~~~g~~~ 318 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRR--ARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDGETGLLV 318 (367)
T ss_pred CeEEECCCCCHHHHHHHHHh--CCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecCCeeEEE
Confidence 6788889998764 4644 55566422 247899999999999987654 356666666888888
Q ss_pred eecCCCCcCCcCHHHHHHHHHHHhcCHHHHH
Q 012061 405 RSWGWGTELRAKGDEIGLKIKDLMANDFLRE 435 (472)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 435 (472)
+. -+.+++.++|.++++|++.++
T Consensus 319 ------~~--~d~~~l~~~i~~l~~~~~~~~ 341 (367)
T cd05844 319 ------PE--GDVAALAAALGRLLADPDLRA 341 (367)
T ss_pred ------CC--CCHHHHHHHHHHHHcCHHHHH
Confidence 43 367999999999999886443
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.87 E-value=1.1e-06 Score=85.34 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=79.9
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhCCCce-EEEEeCCCCCcchhHHHHhhhhHHHHHHhh-cCCceeccCCCh--HHH
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSSGCRF-LWVVKGKNVDKEDEESLKNVLGHELMEKIK-DQGLVVKNWVDQ--DKV 351 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~pq--~~l 351 (472)
.+++..|.........+..+++++.+....+ ++++|. +...+.+.+. .+... ++++.+.+|+++ ..+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~----g~~~~~l~~~-----~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGD----GSDFEKCKAY-----SRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeC----CccHHHHHHH-----HHHcCCCCeEEEecccCCcHHHH
Confidence 5566777764323344566777776643232 334443 1222222221 11111 367888898854 322
Q ss_pred hc-ccCcCcEEeec----CcchHHHHHHhCCcEEecC-CcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 352 LS-HRAVGGFVSHG----GWNSLVEAARHGVPLLVWP-HFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 352 l~-~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
-. +..++++|... --.++.||+++|+|+|+.- ..+ ....++....|..+ +. -+.++++++|.
T Consensus 252 ~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv------~~--~d~~~la~~i~ 319 (359)
T PRK09922 252 QQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELY------TP--GNIDEFVGKLN 319 (359)
T ss_pred HHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEE------CC--CCHHHHHHHHH
Confidence 21 13456677542 2479999999999999875 322 22344444568777 43 37899999999
Q ss_pred HHhcCHH
Q 012061 426 DLMANDF 432 (472)
Q Consensus 426 ~~l~~~~ 432 (472)
++++|++
T Consensus 320 ~l~~~~~ 326 (359)
T PRK09922 320 KVISGEV 326 (359)
T ss_pred HHHhCcc
Confidence 9999886
No 70
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.83 E-value=2.6e-06 Score=81.78 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=75.6
Q ss_pred EEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHh-hcCCceeccCCChHH---Hh
Q 012061 277 VYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKI-KDQGLVVKNWVDQDK---VL 352 (472)
Q Consensus 277 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~pq~~---ll 352 (472)
+.+..|... ..+....+++++++.+.++++ +|.. ...+.+... ..+.. ..+++.+.+++++.+ ++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i-~G~~----~~~~~~~~~----~~~~~~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKL-AGPV----SDPDYFYRE----IAPELLDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEE-EeCC----CCHHHHHHH----HHHhcccCCcEEEeCCCCHHHHHHHH
Confidence 444556663 233345577777777777654 4431 111111111 11111 137899999999864 46
Q ss_pred cccCcCcEEe----ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHH
Q 012061 353 SHRAVGGFVS----HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 353 ~~~~~~~~I~----HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
+.++ +++. +-|. .++.||+++|+|+|+.... .+...+.....|..+ +. .+++.+++.++
T Consensus 242 ~~~d--~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~~~g~l~------~~----~~~l~~~l~~l 305 (335)
T cd03802 242 GNAR--ALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDGVTGFLV------DS----VEELAAAVARA 305 (335)
T ss_pred HhCc--EEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCCCcEEEe------CC----HHHHHHHHHHH
Confidence 4444 4553 2343 5899999999999987643 233333333478777 43 89999999998
Q ss_pred hcCH
Q 012061 428 MAND 431 (472)
Q Consensus 428 l~~~ 431 (472)
+..+
T Consensus 306 ~~~~ 309 (335)
T cd03802 306 DRLD 309 (335)
T ss_pred hccH
Confidence 7643
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.83 E-value=1.2e-05 Score=79.38 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=74.3
Q ss_pred CceEEEeecccccC-CHHHHHHHHHHHHhC--CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhh-cCCceeccCCChH
Q 012061 274 GSVVYVSFGSRLAL-SMEQTKELGDGLLSS--GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIK-DQGLVVKNWVDQD 349 (472)
Q Consensus 274 ~~~v~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~pq~ 349 (472)
+..+++..|..... ..+.+.+.+..+.+. +..++ ++|. +...+.+.+ ..++.. ++++.+.+|+++.
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~-i~G~----g~~~~~l~~-----~~~~~~l~~~v~~~G~~~~~ 261 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFI-IGGD----GPKRILLEE-----MREKYNLQDRVELLGAVPHE 261 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEE-EEeC----CchHHHHHH-----HHHHhCCCCeEEEeCCCCHH
Confidence 34677777876432 244444444444332 33333 3443 122222221 112222 3568888999865
Q ss_pred ---HHhcccCcCcEEee---cCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHH
Q 012061 350 ---KVLSHRAVGGFVSH---GGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGL 422 (472)
Q Consensus 350 ---~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~ 422 (472)
.++ +.++++|.- -|. .++.||+++|+|+|+.+..+ ....+ ..|.+... .. +.+++.+
T Consensus 262 ~~~~~l--~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~~~~~~~------~~---~~~~l~~ 325 (398)
T cd03796 262 RVRDVL--VQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PPDMILLA------EP---DVESIVR 325 (398)
T ss_pred HHHHHH--HhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eCCceeec------CC---CHHHHHH
Confidence 455 445567643 244 39999999999999977643 22233 33444333 22 6799999
Q ss_pred HHHHHhcCH
Q 012061 423 KIKDLMAND 431 (472)
Q Consensus 423 ~i~~~l~~~ 431 (472)
++.+++++.
T Consensus 326 ~l~~~l~~~ 334 (398)
T cd03796 326 KLEEAISIL 334 (398)
T ss_pred HHHHHHhCh
Confidence 999999754
No 72
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.81 E-value=1.5e-05 Score=77.16 Aligned_cols=136 Identities=21% Similarity=0.203 Sum_probs=80.5
Q ss_pred ceEEEeeccccc-CCHHHHHHHHHHHHhC--CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHh-hcCCceeccCCChH-
Q 012061 275 SVVYVSFGSRLA-LSMEQTKELGDGLLSS--GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKI-KDQGLVVKNWVDQD- 349 (472)
Q Consensus 275 ~~v~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~pq~- 349 (472)
+.+++.+|+... ...+.+.+.+..+... +..++++ |. +...+.+.. +.+.. ..+++.+.+++|+.
T Consensus 179 ~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~-G~----~~~~~~~~~-----~~~~~~~~~~v~~~g~~~~~~ 248 (355)
T cd03799 179 PLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIV-GD----GPLRDELEA-----LIAELGLEDRVTLLGAKSQEE 248 (355)
T ss_pred CeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEE-EC----CccHHHHHH-----HHHHcCCCCeEEECCcCChHH
Confidence 356667787632 2345555555555443 3344333 32 122112211 11111 13688999999865
Q ss_pred --HHhcccCcCcEEee----------cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCH
Q 012061 350 --KVLSHRAVGGFVSH----------GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKG 417 (472)
Q Consensus 350 --~ll~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~ 417 (472)
.+++. ++++|.- |.-+++.||+++|+|+|+.+..+ ....++....|..+ +.. +.
T Consensus 249 l~~~~~~--adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~------~~~--~~ 314 (355)
T cd03799 249 VRELLRA--ADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLV------PPG--DP 314 (355)
T ss_pred HHHHHHh--CCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEe------CCC--CH
Confidence 45544 4456662 33478999999999999976432 22344444488887 332 78
Q ss_pred HHHHHHHHHHhcCHHHH
Q 012061 418 DEIGLKIKDLMANDFLR 434 (472)
Q Consensus 418 ~~l~~~i~~~l~~~~~~ 434 (472)
+++.++|.++++|+..+
T Consensus 315 ~~l~~~i~~~~~~~~~~ 331 (355)
T cd03799 315 EALADAIERLLDDPELR 331 (355)
T ss_pred HHHHHHHHHHHhCHHHH
Confidence 99999999999988654
No 73
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.80 E-value=5.8e-06 Score=77.94 Aligned_cols=126 Identities=18% Similarity=0.116 Sum_probs=73.7
Q ss_pred CceEEEeeccc----ccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH
Q 012061 274 GSVVYVSFGSR----LALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD 349 (472)
Q Consensus 274 ~~~v~vs~GS~----~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~ 349 (472)
.+.|++-+-+. .......+.++++.|++.+..++...+. ..+. + ..+.. +-.+...-++..
T Consensus 179 ~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~----~~~~--------~-~~~~~--~~~i~~~~vd~~ 243 (335)
T PF04007_consen 179 EPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRY----EDQR--------E-LFEKY--GVIIPPEPVDGL 243 (335)
T ss_pred CCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCC----cchh--------h-HHhcc--CccccCCCCCHH
Confidence 45677766653 1223456778999999888764333332 1110 0 11111 212233566666
Q ss_pred HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHh
Q 012061 350 KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLM 428 (472)
Q Consensus 350 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 428 (472)
++|.+++ ++|+-|| ....||...|+|.|.+ +.++-...-+.+.+.|.-... .+++++.+.++..+
T Consensus 244 ~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~----------~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 244 DLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHS----------TDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEec----------CCHHHHHHHHHHhh
Confidence 8997755 4998777 8889999999999985 333433344567777762222 36677777555443
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.80 E-value=6.8e-06 Score=79.67 Aligned_cols=107 Identities=22% Similarity=0.249 Sum_probs=67.5
Q ss_pred CCceecc-CCChH---HHhcccCcCcEEee------cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeec
Q 012061 338 QGLVVKN-WVDQD---KVLSHRAVGGFVSH------GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSW 407 (472)
Q Consensus 338 ~~~~~~~-~~pq~---~ll~~~~~~~~I~H------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~ 407 (472)
+++.+.+ |+|+. .++. .++++|.- |..++++||+++|+|+|+.+..+ ...+...+.|..+
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~--~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~--- 316 (366)
T cd03822 247 DRVIFINRYLPDEELPELFS--AADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLV--- 316 (366)
T ss_pred CcEEEecCcCCHHHHHHHHh--hcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEE---
Confidence 5777665 48865 5564 45557632 33468999999999999987544 3335555778777
Q ss_pred CCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 408 GWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
+.. +.+++.+++.++++|++.+++ +++..++.... =+-.+.++.+.+
T Consensus 317 ---~~~--d~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~-~s~~~~~~~~~~ 363 (366)
T cd03822 317 ---PPG--DPAALAEAIRRLLADPELAQA---LRARAREYARA-MSWERVAERYLR 363 (366)
T ss_pred ---cCC--CHHHHHHHHHHHHcChHHHHH---HHHHHHHHHhh-CCHHHHHHHHHH
Confidence 332 589999999999998755433 33333332222 344445555444
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.79 E-value=1.6e-05 Score=76.90 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=79.2
Q ss_pred ceEEEeecccccC-CHHHHHHHHHHHHhCCCce-EEEEeCCCCCcchhHHHHhhhhHHHHHHhh-cCCceeccCCChH-H
Q 012061 275 SVVYVSFGSRLAL-SMEQTKELGDGLLSSGCRF-LWVVKGKNVDKEDEESLKNVLGHELMEKIK-DQGLVVKNWVDQD-K 350 (472)
Q Consensus 275 ~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~pq~-~ 350 (472)
..+++..|..... ..+.+.+++..+.+.+..+ ++++|.. ...+.....+-+ ...... .+++.+.+|.+.. .
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~----~~~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA----QGRRFYYAELLE-LIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC----cccchHHHHHHH-HHHHcCCcceEEEcCCcccHHH
Confidence 3566777876432 3566666666666532222 3344431 111111111100 111111 3578888885433 6
Q ss_pred HhcccCcCcEEeec----C-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 351 VLSHRAVGGFVSHG----G-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 351 ll~~~~~~~~I~Hg----G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
+++.+++ +|+-. | .++++||+++|+|+|+.... .....+...+.|..+ +. -+.+++.++|.
T Consensus 260 ~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~~~g~~~------~~--~~~~~l~~~i~ 325 (355)
T cd03819 260 AYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPGETGLLV------PP--GDAEALAQALD 325 (355)
T ss_pred HHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCCCceEEe------CC--CCHHHHHHHHH
Confidence 6755444 65422 3 35999999999999987532 344455555688887 43 37899999997
Q ss_pred HHhc-CHHHHH
Q 012061 426 DLMA-NDFLRE 435 (472)
Q Consensus 426 ~~l~-~~~~~~ 435 (472)
.++. +++.++
T Consensus 326 ~~~~~~~~~~~ 336 (355)
T cd03819 326 QILSLLPEGRA 336 (355)
T ss_pred HHHhhCHHHHH
Confidence 6654 665443
No 76
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.78 E-value=4.1e-06 Score=80.32 Aligned_cols=88 Identities=23% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCceeccCCChH-HHhcccCcCcEEee----cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCc
Q 012061 338 QGLVVKNWVDQD-KVLSHRAVGGFVSH----GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~~~~pq~-~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 412 (472)
+++.+.++.+.. .+++. ++++|.- |..+++.||+++|+|+|+.... .....+++.+.|... +.
T Consensus 246 ~~v~~~g~~~~~~~~~~~--~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~------~~ 313 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKA--ADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLV------PV 313 (353)
T ss_pred ccEEEecccCCHHHHHHh--CCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEE------CC
Confidence 577787887654 66655 4557643 3356899999999999986433 556667777888888 33
Q ss_pred CCcCHHHH---HHHHHHHhcCHHHHHHHHH
Q 012061 413 LRAKGDEI---GLKIKDLMANDFLREQAKR 439 (472)
Q Consensus 413 ~~~~~~~l---~~~i~~~l~~~~~~~~a~~ 439 (472)
. +.+.+ .+++..++.+++.++++.+
T Consensus 314 ~--~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 314 G--DEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred C--CHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 2 55666 5666666667665544444
No 77
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.77 E-value=2.9e-05 Score=77.54 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=60.2
Q ss_pred CCceeccCCChHHH---hccc--CcCcEEeec---C-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecC
Q 012061 338 QGLVVKNWVDQDKV---LSHR--AVGGFVSHG---G-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWG 408 (472)
Q Consensus 338 ~~~~~~~~~pq~~l---l~~~--~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 408 (472)
+++.+.+++++.++ ++.+ ++++||... | -.+++||+++|+|+|+.... -+...+.....|+.+
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~~~G~lv---- 388 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANCRNGLLV---- 388 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCCCcEEEe----
Confidence 56777788887654 4333 236687654 4 35999999999999998643 344445444578887
Q ss_pred CCCcCCcCHHHHHHHHHHHhcCHHHH
Q 012061 409 WGTELRAKGDEIGLKIKDLMANDFLR 434 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~~l~~~~~~ 434 (472)
+. -++++++++|.++++|++.+
T Consensus 389 --~~--~d~~~la~~i~~ll~~~~~~ 410 (439)
T TIGR02472 389 --DV--LDLEAIASALEDALSDSSQW 410 (439)
T ss_pred --CC--CCHHHHHHHHHHHHhCHHHH
Confidence 43 36899999999999988654
No 78
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.74 E-value=2.3e-05 Score=76.98 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=68.5
Q ss_pred Ccee-ccCCChH---HHhcccCcCcEEee---cC-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 339 GLVV-KNWVDQD---KVLSHRAVGGFVSH---GG-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 339 ~~~~-~~~~pq~---~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
++.. .+++++. .++.. ++++|.= -| ..+++||+++|+|+|+... ......++..+.|..+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~--aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~~~G~~~------ 328 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSN--AEVFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDGETGFLV------ 328 (388)
T ss_pred ceEEecCCCCHHHHHHHHHh--CCEEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCCCceEEc------
Confidence 3543 4677765 45644 5557753 22 3577999999999999754 3355556666778888
Q ss_pred CcCCc----CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 411 TELRA----KGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 411 ~~~~~----~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+.... ..+++.++|.++++|++.+++.. +..++.+.+.=+.+..++++++.+.
T Consensus 329 ~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~---~~a~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 329 PPDNSDADGFQAELAKAINILLADPELAKKMG---IAGRKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred CCCCCcccchHHHHHHHHHHHHhCHHHHHHHH---HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43322 23899999999999886554332 2222221222355556666665554
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.71 E-value=0.00018 Score=76.89 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCceeccCCChHH---Hhccc--CcCcEEee---cCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecC
Q 012061 338 QGLVVKNWVDQDK---VLSHR--AVGGFVSH---GGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWG 408 (472)
Q Consensus 338 ~~~~~~~~~pq~~---ll~~~--~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 408 (472)
++|.+.+++++.+ ++..+ ..++||.- =|+ .+++||+++|+|+|+....+ ....++...-|+.+
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlLV---- 619 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLLV---- 619 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEEE----
Confidence 5677778888764 34332 12457764 344 58999999999999986433 22233334568888
Q ss_pred CCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 409 WGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
+. -+++.|+++|.++++|+..+++..+-+.+..+. =+-...++.+++.+..
T Consensus 620 --dP--~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~----FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 620 --DP--HDQQAIADALLKLVADKQLWAECRQNGLKNIHL----FSWPEHCKTYLSRIAS 670 (1050)
T ss_pred --CC--CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHH
Confidence 43 378999999999999987665444433332211 2444555556555543
No 80
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=4.5e-05 Score=72.26 Aligned_cols=319 Identities=20% Similarity=0.186 Sum_probs=176.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCC-CCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChH
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYP-TVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPF 89 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (472)
.+-+-..|-|-++-...|.++|.++ ++.+++.|..+ ..+.+++ ..++ .+.....|+|. .
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~--------~~~~--~v~h~YlP~D~--------~ 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAA--------LFGD--SVIHQYLPLDL--------P 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHH--------HcCC--CeEEEecCcCc--------h
Confidence 7777888999999999999999998 89988887332 2222221 1121 12334444431 1
Q ss_pred HHHHHHHHHhHhhhhhhcC-CCCcEEEEcC-CChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCCCC
Q 012061 90 LLRWEAIRRSAHLLAPLLS-PPLSALITDV-TLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVE 167 (472)
Q Consensus 90 ~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 167 (472)
. .+...++ ++||++|.-- =+.+....-+++.|||.+....=
T Consensus 113 ~-----------~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------------------- 155 (419)
T COG1519 113 I-----------AVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------------------- 155 (419)
T ss_pred H-----------HHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee--------------------------
Confidence 1 2334455 6899877433 23444555677899998765221
Q ss_pred CCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhccc-ccccceEEEcccccccHHHHHHHhcccccCCCCCeeEec
Q 012061 168 FDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNS-FVKSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAVG 246 (472)
Q Consensus 168 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~vG 246 (472)
+.-+. ...++.+...... +.+-+.++..+-.+-+. +. + =+.+++...|
T Consensus 156 -------------LS~rS---------~~~y~k~~~~~~~~~~~i~li~aQse~D~~R--f~---~----LGa~~v~v~G 204 (419)
T COG1519 156 -------------LSDRS---------FARYAKLKFLARLLFKNIDLILAQSEEDAQR--FR---S----LGAKPVVVTG 204 (419)
T ss_pred -------------echhh---------hHHHHHHHHHHHHHHHhcceeeecCHHHHHH--HH---h----cCCcceEEec
Confidence 00000 0011111111111 12334555554222211 11 1 1345688888
Q ss_pred ccCCCCccCCC-CCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCC--CceEEEEeCCCCCcchhHHH
Q 012061 247 PLLPCEFEKRD-DPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSG--CRFLWVVKGKNVDKEDEESL 323 (472)
Q Consensus 247 pl~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~ 323 (472)
.+-.+....+. ......++..+... + .+.|..+|. ..+.+.+.....+|.+.. ...||+=+ .+|.+
T Consensus 205 NlKfd~~~~~~~~~~~~~~r~~l~~~--r-~v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPR-------HpERf 273 (419)
T COG1519 205 NLKFDIEPPPQLAAELAALRRQLGGH--R-PVWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPR-------HPERF 273 (419)
T ss_pred ceeecCCCChhhHHHHHHHHHhcCCC--C-ceEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecC-------ChhhH
Confidence 87554332211 11211133333322 3 466666664 335666777777887644 33444432 23333
Q ss_pred HhhhhHHHHHHhhcCCcee-----------------ccCCChH-HHhcccCc----CcEEeecCcchHHHHHHhCCcEEe
Q 012061 324 KNVLGHELMEKIKDQGLVV-----------------KNWVDQD-KVLSHRAV----GGFVSHGGWNSLVEAARHGVPLLV 381 (472)
Q Consensus 324 ~~~~p~~~~~~~~~~~~~~-----------------~~~~pq~-~ll~~~~~----~~~I~HgG~~s~~eal~~GvP~l~ 381 (472)
+.. .+-.+..|+.+ .+-+--. .+++-+++ +-++-+||+| .+|.+++|+|+|.
T Consensus 274 ~~v-----~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~ 347 (419)
T COG1519 274 KAV-----ENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIF 347 (419)
T ss_pred HHH-----HHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEe
Confidence 322 11112233333 3333222 22322332 1134588887 6899999999999
Q ss_pred cCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 012061 382 WPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEA 444 (472)
Q Consensus 382 ~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 444 (472)
=|+..-|.+-++++++.|.|+.+ + +++.+.+++..+++|++.|++..+-+..+
T Consensus 348 Gp~~~Nf~ei~~~l~~~ga~~~v------~----~~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 348 GPYTFNFSDIAERLLQAGAGLQV------E----DADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred CCccccHHHHHHHHHhcCCeEEE------C----CHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 4 36888899988888877665554444443
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.70 E-value=4.1e-05 Score=74.16 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCceeccCCChH-HHhcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCc
Q 012061 338 QGLVVKNWVDQD-KVLSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~~~~pq~-~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 412 (472)
+++.+.++..+. .+++.++ ++|.-.. .+++.||+++|+|+|+. |...+...+++ .|..+ +.
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad--~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~--~g~~~------~~ 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAAD--LFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD--SGLIV------PI 310 (360)
T ss_pred CcEEEecccccHHHHHHhhc--eEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC--CceEe------CC
Confidence 578888877543 6675544 4665432 57899999999999985 44445555555 34444 22
Q ss_pred CCcCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLM-ANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
-+.+++.+++.+++ .++.+++...+.++.+.+. =+-...++++.+
T Consensus 311 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~----~s~~~~~~~~~~ 356 (360)
T cd04951 311 --SDPEALANKIDEILKMSGEERDIIGARRERIVKK----FSINSIVQQWLT 356 (360)
T ss_pred --CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 37889999999998 4566665444433333322 244444455444
No 82
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.65 E-value=2.4e-06 Score=81.21 Aligned_cols=164 Identities=20% Similarity=0.130 Sum_probs=91.3
Q ss_pred ceEEEeecccccCCHHHHHHHHHHHHhCCCc-eEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhc
Q 012061 275 SVVYVSFGSRLALSMEQTKELGDGLLSSGCR-FLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLS 353 (472)
Q Consensus 275 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~ 353 (472)
++|.+--||-...-...+..++++...+..+ ..+.+... ...+.+.+... +. ..+.+.+ +..+++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a----~~~~~i~~~~~-----~~--~~~~~~~--~~~~~m- 233 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF----FKGKDLKEIYG-----DI--SEFEISY--DTHKAL- 233 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC----CcHHHHHHHHh-----cC--CCcEEec--cHHHHH-
Confidence 5899999998543344455444555433221 22333221 11122222111 00 2222222 334677
Q ss_pred ccCcCcEEeecCcchHHHHHHhCCcEEecCCc--ccchhhHHHHHh---hCeeeEE-eecC-C----C-CcCCcCHHHHH
Q 012061 354 HRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF--GDQKINAEAVER---AGLGMWV-RSWG-W----G-TELRAKGDEIG 421 (472)
Q Consensus 354 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~---~G~G~~l-~~~~-~----~-~~~~~~~~~l~ 421 (472)
.+++++|+-+|..|+ |++.+|+|||+ ++- .-|..||+++++ .|..-.+ ++.. + + -.+.+|++.|.
T Consensus 234 -~~aDlal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la 310 (347)
T PRK14089 234 -LEAEFAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLL 310 (347)
T ss_pred -HhhhHHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHH
Confidence 446679999999999 99999999999 543 468999999984 3443222 1000 0 0 13568999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHH
Q 012061 422 LKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKEL 461 (472)
Q Consensus 422 ~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 461 (472)
+++.+. .+++.++..+++++..+. +++.+.++.+
T Consensus 311 ~~i~~~-----~~~~~~~~~~~l~~~l~~-~a~~~~A~~i 344 (347)
T PRK14089 311 KAYKEM-----DREKFFKKSKELREYLKH-GSAKNVAKIL 344 (347)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 999872 344555555555554433 5555554443
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.65 E-value=5.3e-05 Score=73.52 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=64.4
Q ss_pred cCCceeccCCChHHHhcc-cCcCcEEeecCc-----chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 337 DQGLVVKNWVDQDKVLSH-RAVGGFVSHGGW-----NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 337 ~~~~~~~~~~pq~~ll~~-~~~~~~I~HgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
.+++.+.+++++.++..+ ..++.++.+.-. +++.||+++|+|+|+....+.. ..++. .|...
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~----e~~~~--~g~~~------ 314 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNR----EVLGD--KAIYF------ 314 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccc----eeecC--CeeEe------
Confidence 478999999998743222 334456655433 4799999999999997544221 11222 34444
Q ss_pred CcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 012061 411 TELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDK 464 (472)
Q Consensus 411 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (472)
+.. +.+.+++.++++|++.+++ +++..++.+.+.=+-...++++++.
T Consensus 315 ~~~----~~l~~~i~~l~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 315 KVG----DDLASLLEELEADPEEVSA---MAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred cCc----hHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 221 2299999999998755433 3343333322233555566666554
No 84
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.62 E-value=0.00013 Score=70.24 Aligned_cols=107 Identities=24% Similarity=0.250 Sum_probs=65.2
Q ss_pred CCceeccCCCh-HHHhcccCcCcEEeecCc----chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCc
Q 012061 338 QGLVVKNWVDQ-DKVLSHRAVGGFVSHGGW----NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~~~~pq-~~ll~~~~~~~~I~HgG~----~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 412 (472)
+++.+.+..+. ..+++. ++++|....+ +++.||+++|+|+|+.. ...+...+.+ .|..+ +.
T Consensus 251 ~~v~~~g~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~--~g~~~------~~ 316 (365)
T cd03807 251 DKVILLGERSDVPALLNA--LDVFVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD--TGFLV------PP 316 (365)
T ss_pred ceEEEccccccHHHHHHh--CCEEEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc--CCEEe------CC
Confidence 45666555443 366754 5558865543 79999999999999854 3444555555 56666 33
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
. +.+++.+++.++++|++.++ ++++..++.+.+.=+-.+.++.+.+
T Consensus 317 ~--~~~~l~~~i~~l~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 317 G--DPEALAEAIEALLADPALRQ---ALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred C--CHHHHHHHHHHHHhChHHHH---HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 58999999999999875442 2333333222222344445555544
No 85
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.61 E-value=1.3e-05 Score=79.08 Aligned_cols=84 Identities=25% Similarity=0.271 Sum_probs=59.5
Q ss_pred cCCceeccCCChH-HHhcccCcCcEE--ee--cCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 337 DQGLVVKNWVDQD-KVLSHRAVGGFV--SH--GGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 337 ~~~~~~~~~~pq~-~ll~~~~~~~~I--~H--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
.+++.+.+++++. .+++. ++++| ++ .|. +.+.||+++|+|+|+.+...+.. .+..|.|+.+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~--adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv------ 345 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAH--AAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLV------ 345 (397)
T ss_pred CCCeEEeeecCCHHHHHHh--CCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEe------
Confidence 3788888999854 56654 44566 32 354 36999999999999998643321 1234677777
Q ss_pred CcCCcCHHHHHHHHHHHhcCHHHHHH
Q 012061 411 TELRAKGDEIGLKIKDLMANDFLREQ 436 (472)
Q Consensus 411 ~~~~~~~~~l~~~i~~~l~~~~~~~~ 436 (472)
. -++++++++|.++++|++.+++
T Consensus 346 ~---~~~~~la~ai~~ll~~~~~~~~ 368 (397)
T TIGR03087 346 A---ADPADFAAAILALLANPAEREE 368 (397)
T ss_pred C---CCHHHHHHHHHHHHcCHHHHHH
Confidence 3 3789999999999998865533
No 86
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.58 E-value=0.00094 Score=69.80 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=56.1
Q ss_pred CCceeccCC-Ch---HHHhcc-c-CcCcEEee---cCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeec
Q 012061 338 QGLVVKNWV-DQ---DKVLSH-R-AVGGFVSH---GGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSW 407 (472)
Q Consensus 338 ~~~~~~~~~-pq---~~ll~~-~-~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~ 407 (472)
+++.+.++. +. ..++.+ + +.++||.- =|. .+++||++||+|+|+.-.. -.+..++.-.-|..+
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg~tGfLV--- 691 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDGVSGFHI--- 691 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCCCcEEEe---
Confidence 566766664 32 244432 2 23457743 233 5999999999999997543 344555555678888
Q ss_pred CCCCcCCcCHHHHHHHHHHHh----cCHHHHHH
Q 012061 408 GWGTELRAKGDEIGLKIKDLM----ANDFLREQ 436 (472)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~~l----~~~~~~~~ 436 (472)
+.. ++++++++|.+++ .|++.+++
T Consensus 692 ---dp~--D~eaLA~aL~~ll~kll~dp~~~~~ 719 (784)
T TIGR02470 692 ---DPY--HGEEAAEKIVDFFEKCDEDPSYWQK 719 (784)
T ss_pred ---CCC--CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 443 6788999988876 57766544
No 87
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.57 E-value=6.8e-06 Score=79.57 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=90.7
Q ss_pred CCceEEEeeccc---ccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH
Q 012061 273 EGSVVYVSFGSR---LALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD 349 (472)
Q Consensus 273 ~~~~v~vs~GS~---~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~ 349 (472)
+++.|+|++=-. .....+.+..++++|...+.+++++.... +... ....+.+ ..+... .+|+.+.+-++..
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~--~p~~-~~i~~~i-~~~~~~--~~~v~l~~~l~~~ 273 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA--DAGS-RIINEAI-EEYVNE--HPNFRLFKSLGQE 273 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC--CCCc-hHHHHHH-HHHhcC--CCCEEEECCCChH
Confidence 345777877543 23346789999999988776666655331 0111 1111111 111111 3678877765544
Q ss_pred ---HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeE-EeecCCCCcCCcCHHHHHHHHH
Q 012061 350 ---KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMW-VRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 350 ---~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~-l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
.++.+ ++++||-++.+- .||.+.|+|.|.+- +.+ ...+.|..+. + ..++++|.++++
T Consensus 274 ~~l~Ll~~--a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~v---------g~~~~~I~~a~~ 334 (365)
T TIGR03568 274 RYLSLLKN--ADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLRADSVIDV---------DPDKEEIVKAIE 334 (365)
T ss_pred HHHHHHHh--CCEEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhhcCeEEEe---------CCCHHHHHHHHH
Confidence 66755 556998875555 99999999999873 211 1112343333 3 347899999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHH
Q 012061 426 DLMANDFLREQAKRIEEEARKAIGVGGSSERTFK 459 (472)
Q Consensus 426 ~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 459 (472)
+++ +++++++. . ......++|.++.++++
T Consensus 335 ~~~-~~~~~~~~---~-~~~~pygdg~as~rI~~ 363 (365)
T TIGR03568 335 KLL-DPAFKKSL---K-NVKNPYGDGNSSERIIE 363 (365)
T ss_pred HHh-ChHHHHHH---h-hCCCCCCCChHHHHHHH
Confidence 965 44443332 1 11234577888777665
No 88
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.54 E-value=2.1e-07 Score=89.08 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=96.2
Q ss_pred CeeEecccCCCCccC---CCCCCccch--hhhccCCCCCceEEEeecccccCC-H---HHHHHHHHHHHhC-CCceEEEE
Q 012061 241 PVYAVGPLLPCEFEK---RDDPSTSLI--LKWLDDQPEGSVVYVSFGSRLALS-M---EQTKELGDGLLSS-GCRFLWVV 310 (472)
Q Consensus 241 ~v~~vGpl~~~~~~~---~~~~~~~~~--~~~l~~~~~~~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~~~~~ 310 (472)
+++.+|....+.... ...+. . .+++.. .+++.++|++=...... + ..+.+++.+|.+. +.+++|.+
T Consensus 146 rI~~vG~~~~D~l~~~~~~~~~~---~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~ 221 (346)
T PF02350_consen 146 RIFVVGNPGIDALLQNKEEIEEK---YKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPL 221 (346)
T ss_dssp GEEE---HHHHHHHHHHHTTCC----HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE-
T ss_pred eEEEEChHHHHHHHHhHHHHhhh---hhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 688899765443211 11111 2 122222 56679999985554444 3 4556667777665 77888888
Q ss_pred eCCCCCcchhHHHHhhhhHHHHHHhhc-CCceeccCCChH---HHhcccCcCcEEeecCcchHH-HHHHhCCcEEecCCc
Q 012061 311 KGKNVDKEDEESLKNVLGHELMEKIKD-QGLVVKNWVDQD---KVLSHRAVGGFVSHGGWNSLV-EAARHGVPLLVWPHF 385 (472)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~pq~---~ll~~~~~~~~I~HgG~~s~~-eal~~GvP~l~~P~~ 385 (472)
.+. + ..... +.+.... +|+++..-+++. .+|+++ +++|+-.| ++. ||.++|+|.|.+=..
T Consensus 222 hn~-----p--~~~~~----i~~~l~~~~~v~~~~~l~~~~~l~ll~~a--~~vvgdSs--GI~eEa~~lg~P~v~iR~~ 286 (346)
T PF02350_consen 222 HNN-----P--RGSDI----IIEKLKKYDNVRLIEPLGYEEYLSLLKNA--DLVVGDSS--GIQEEAPSLGKPVVNIRDS 286 (346)
T ss_dssp -S------H--HHHHH----HHHHHTT-TTEEEE----HHHHHHHHHHE--SEEEESSH--HHHHHGGGGT--EEECSSS
T ss_pred cCC-----c--hHHHH----HHHHhcccCCEEEECCCCHHHHHHHHhcc--eEEEEcCc--cHHHHHHHhCCeEEEecCC
Confidence 751 1 11111 1222211 478777666654 777664 45999999 666 999999999999222
Q ss_pred ccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHH
Q 012061 386 GDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKEL 461 (472)
Q Consensus 386 ~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 461 (472)
++.+. ....|..+.+ + .++++|.+++++++.++.+.++.+. .....++|.++.++++-+
T Consensus 287 geRqe----~r~~~~nvlv------~---~~~~~I~~ai~~~l~~~~~~~~~~~----~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 287 GERQE----GRERGSNVLV------G---TDPEAIIQAIEKALSDKDFYRKLKN----RPNPYGDGNASERIVEIL 345 (346)
T ss_dssp -S-HH----HHHTTSEEEE------T---SSHHHHHHHHHHHHH-HHHHHHHHC----S--TT-SS-HHHHHHHHH
T ss_pred CCCHH----HHhhcceEEe------C---CCHHHHHHHHHHHHhChHHHHhhcc----CCCCCCCCcHHHHHHHhh
Confidence 22211 2233555556 3 5789999999999987444433332 233467888877766543
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.53 E-value=1.9e-05 Score=76.48 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=60.4
Q ss_pred cCCceeccCCChH---HHhcccCcCcEEee----cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCC
Q 012061 337 DQGLVVKNWVDQD---KVLSHRAVGGFVSH----GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGW 409 (472)
Q Consensus 337 ~~~~~~~~~~pq~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 409 (472)
.+++.+.+++|+. .+++.++ ++|.- |..+++.||+++|+|+|+....+ ....+. ..|..+
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~--~~~~~~----- 318 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGAR--AFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG--DAALYF----- 318 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhh--hhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec--Cceeee-----
Confidence 4788899999876 4564444 45533 33468999999999999965422 111122 234455
Q ss_pred CCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 012061 410 GTELRAKGDEIGLKIKDLMANDFLREQAKRIEEE 443 (472)
Q Consensus 410 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~ 443 (472)
+. -+.+++.++|.++++|++.+.+..+-+..
T Consensus 319 -~~--~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 319 -DP--LDPEALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred -CC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22 27899999999999999877665554443
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.51 E-value=0.00015 Score=71.50 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=50.4
Q ss_pred eeccCCChHHHhcccCcCcEEeec----CcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcC
Q 012061 341 VVKNWVDQDKVLSHRAVGGFVSHG----GWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAK 416 (472)
Q Consensus 341 ~~~~~~pq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~ 416 (472)
++.++.+..+++.. .++||.-+ =.++++||+++|+|+|+.-..+ | ..+.+-+-|... + +
T Consensus 287 vf~G~~~~~~~~~~--~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~------~----~ 349 (462)
T PLN02846 287 VYPGRDHADPLFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTY------D----D 349 (462)
T ss_pred EECCCCCHHHHHHh--CCEEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEec------C----C
Confidence 35567777778855 46688774 3468999999999999985432 2 223333444333 2 6
Q ss_pred HHHHHHHHHHHhcCH
Q 012061 417 GDEIGLKIKDLMAND 431 (472)
Q Consensus 417 ~~~l~~~i~~~l~~~ 431 (472)
.+++.+++.++|.++
T Consensus 350 ~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 350 GKGFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHHHccC
Confidence 789999999999743
No 91
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.49 E-value=7.8e-05 Score=72.20 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=81.0
Q ss_pred ceEEEeecccccC-CHHHHHHHHHHHHhC--CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCCh-HH
Q 012061 275 SVVYVSFGSRLAL-SMEQTKELGDGLLSS--GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQ-DK 350 (472)
Q Consensus 275 ~~v~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq-~~ 350 (472)
+.+++..|+.... ..+.+.+.+..+.+. +.++++ +|. +...+.+... ..+.-..+++.+.++..+ ..
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~i-vG~----g~~~~~~~~~----~~~~~~~~~v~~~g~~~~~~~ 262 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLL-VGD----GELEEEIKKK----VKELGLEDKVIFLGVRNDVPE 262 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEE-EeC----CchHHHHHHH----HHhcCCCCcEEEecccCCHHH
Confidence 3566677776422 345555555555443 334333 333 1111111111 111111367777787544 36
Q ss_pred HhcccCcCcEEee----cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHH
Q 012061 351 VLSHRAVGGFVSH----GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKD 426 (472)
Q Consensus 351 ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~ 426 (472)
++.. ++++|+- |-.++++||+++|+|+|+....+ ....+.. +.|... .. -++++++++|.+
T Consensus 263 ~~~~--adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~~~------~~--~~~~~~a~~i~~ 327 (358)
T cd03812 263 LLQA--MDVFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKFLS------LD--ESPEIWAEEILK 327 (358)
T ss_pred HHHh--cCEEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccEEe------CC--CCHHHHHHHHHH
Confidence 6754 4456654 34579999999999999875543 2333444 556555 22 257999999999
Q ss_pred HhcCHHHHHHHHHH
Q 012061 427 LMANDFLREQAKRI 440 (472)
Q Consensus 427 ~l~~~~~~~~a~~l 440 (472)
+++|++.+++....
T Consensus 328 l~~~~~~~~~~~~~ 341 (358)
T cd03812 328 LKSEDRRERSSESI 341 (358)
T ss_pred HHhCcchhhhhhhh
Confidence 99998766544433
No 92
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.44 E-value=0.0002 Score=71.82 Aligned_cols=201 Identities=14% Similarity=0.091 Sum_probs=105.8
Q ss_pred CCeeEec-ccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHH--hC--CCceEEEEeCCC
Q 012061 240 PPVYAVG-PLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLL--SS--GCRFLWVVKGKN 314 (472)
Q Consensus 240 p~v~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~~~~~~~~~ 314 (472)
-++.+|| |+...-......++ .++-+.-.+++++|-+--||-...-...+..++++.+ .. +.+|++....
T Consensus 381 v~v~yVGHPL~d~i~~~~~~~~---~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~-- 455 (608)
T PRK01021 381 LRTVYLGHPLVETISSFSPNLS---WKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSAN-- 455 (608)
T ss_pred CCeEEECCcHHhhcccCCCHHH---HHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCc--
Confidence 4788999 44432211111111 3334444456679999999974333444555666655 32 3445443222
Q ss_pred CCcchhHHHHhhhhHHHHHHhhcCCc---eeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecC-Ccccchh
Q 012061 315 VDKEDEESLKNVLGHELMEKIKDQGL---VVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWP-HFGDQKI 390 (472)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P-~~~DQ~~ 390 (472)
....+.+. +.....++ .+..--...+++ .++++.+.-+|. -++|+..+|+||+++= ...=-..
T Consensus 456 --~~~~~~i~--------~~~~~~~~~~~~ii~~~~~~~~m--~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~ 522 (608)
T PRK01021 456 --PKYDHLIL--------EVLQQEGCLHSHIVPSQFRYELM--RECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTF 522 (608)
T ss_pred --hhhHHHHH--------HHHhhcCCCCeEEecCcchHHHH--HhcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHH
Confidence 11111111 11111221 221100124677 446668888876 4679999999999962 1112234
Q ss_pred hHHHHHhh---Cee-------eE-EeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHH
Q 012061 391 NAEAVERA---GLG-------MW-VRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFK 459 (472)
Q Consensus 391 na~~v~~~---G~G-------~~-l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 459 (472)
-|+++.+. =+| .. +++.= ...+++|++.|.+++ ++|.|++++++.++--+++++..++|.++.+..-
T Consensus 523 Iak~Lvki~i~yIsLpNIIagr~VvPEll-qgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~~~~~~~~~~ 600 (608)
T PRK01021 523 LAKYIFKIILPAYSLPNIILGSTIFPEFI-GGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMNESASTMKECL 600 (608)
T ss_pred HHHHHHhccCCeeehhHHhcCCCcchhhc-CCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 56666651 122 11 10000 002578999999997 8888887777666666666666666666555443
Q ss_pred H
Q 012061 460 E 460 (472)
Q Consensus 460 ~ 460 (472)
.
T Consensus 601 ~ 601 (608)
T PRK01021 601 S 601 (608)
T ss_pred H
Confidence 3
No 93
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.40 E-value=0.00078 Score=65.80 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=68.1
Q ss_pred CCceeccCCCh-HHHhcccCcCcEEe--e--cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCc
Q 012061 338 QGLVVKNWVDQ-DKVLSHRAVGGFVS--H--GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~~~~pq-~~ll~~~~~~~~I~--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 412 (472)
+++.+.++..+ ..+++.++ ++|. + |-.++++||+++|+|+|+.... .+...++.-..|..+ +.
T Consensus 255 ~~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~~~g~~~------~~ 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHGVTGALV------PP 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCCCceEEe------CC
Confidence 44555555433 36775544 4663 2 3356999999999999997653 344455555678877 43
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
-+.++++++|.++++|++.++. +++..++.+...=+....++++++-+.
T Consensus 323 --~d~~~la~~i~~l~~~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 323 --GDAVALARALQPYVSDPAARRA---HGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3679999999999998765432 222222222222355555555555443
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.38 E-value=0.00086 Score=65.49 Aligned_cols=110 Identities=19% Similarity=0.177 Sum_probs=67.1
Q ss_pred CCceeccCC--ChH---HHhcccCcCcEEeec---C-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecC
Q 012061 338 QGLVVKNWV--DQD---KVLSHRAVGGFVSHG---G-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWG 408 (472)
Q Consensus 338 ~~~~~~~~~--pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 408 (472)
+++.+.++. +.. .++ ..+++|+.-. | ..+++||+++|+|+|+....+ ....+..-..|..+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~---- 321 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLV---- 321 (372)
T ss_pred CCeEEEecCCCCHHHHHHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEe----
Confidence 567776776 443 445 4566688644 2 349999999999999975432 23345444667766
Q ss_pred CCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 409 WGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+ +.+.++.+|.++++|++.+++..+-+.+. +.+.=+-...++++++-+.
T Consensus 322 --~----~~~~~a~~i~~ll~~~~~~~~~~~~a~~~---~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 322 --D----TVEEAAVRILYLLRDPELRRKMGANAREH---VRENFLITRHLKDYLYLIS 370 (372)
T ss_pred --C----CcHHHHHHHHHHHcCHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHH
Confidence 3 35678889999999887664433333221 1112255555666665443
No 95
>PLN02275 transferase, transferring glycosyl groups
Probab=98.32 E-value=0.0027 Score=61.99 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=52.3
Q ss_pred CCceecc-CCChHHHhc-ccCcCcEEe-e-----cC-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecC
Q 012061 338 QGLVVKN-WVDQDKVLS-HRAVGGFVS-H-----GG-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWG 408 (472)
Q Consensus 338 ~~~~~~~-~~pq~~ll~-~~~~~~~I~-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~ 408 (472)
+|+.+.. |+|..++-. .+.++++|. + -| -++++||+++|+|+|+... ..+...+++-+.|..+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g~~G~lv---- 357 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDGKNGLLF---- 357 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCCCCeEEE----
Confidence 4566544 788775522 155666774 1 12 2579999999999999753 2355556666789988
Q ss_pred CCCcCCcCHHHHHHHHHHHh
Q 012061 409 WGTELRAKGDEIGLKIKDLM 428 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~~l 428 (472)
+ ++++++++|.++|
T Consensus 358 --~----~~~~la~~i~~l~ 371 (371)
T PLN02275 358 --S----SSSELADQLLELL 371 (371)
T ss_pred --C----CHHHHHHHHHHhC
Confidence 4 4789999998775
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.29 E-value=0.00025 Score=67.98 Aligned_cols=201 Identities=19% Similarity=0.170 Sum_probs=107.1
Q ss_pred CCeeEecccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHH---h--CCCceEEEEeCCC
Q 012061 240 PPVYAVGPLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLL---S--SGCRFLWVVKGKN 314 (472)
Q Consensus 240 p~v~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~---~--~~~~~~~~~~~~~ 314 (472)
-++.|||--+.+......+ . ....+.+ -.+++++|.+--||-...-...+..++++.+ + .+.+|++....
T Consensus 153 ~~~~~VGHPl~d~~~~~~~-~-~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~-- 227 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKPEPD-R-AEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP-- 227 (373)
T ss_pred CCeEEECCcchhhhccCCC-H-HHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC--
Confidence 4789999433333221111 1 1133333 3356679999999964322333344445443 2 24455554433
Q ss_pred CCcchhHHHHhhhhHHHHHHhhcCCceec-cCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecC-CcccchhhH
Q 012061 315 VDKEDEESLKNVLGHELMEKIKDQGLVVK-NWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWP-HFGDQKINA 392 (472)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P-~~~DQ~~na 392 (472)
....+.+...+ ... ..++.+. ..-.-.+++.. +++.+.-.|- .|+|+..+|+|||++= ...=-..-|
T Consensus 228 --~~~~~~i~~~~-----~~~-~~~~~~~~~~~~~~~~m~~--ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~ia 296 (373)
T PF02684_consen 228 --EVHEELIEEIL-----AEY-PPDVSIVIIEGESYDAMAA--ADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIA 296 (373)
T ss_pred --HHHHHHHHHHH-----Hhh-CCCCeEEEcCCchHHHHHh--CcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHH
Confidence 11111011111 010 1222221 22233466754 4446666554 5789999999999862 222345567
Q ss_pred HHHHhhC-eee---EEeecCC-C-CcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHH
Q 012061 393 EAVERAG-LGM---WVRSWGW-G-TELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSER 456 (472)
Q Consensus 393 ~~v~~~G-~G~---~l~~~~~-~-~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 456 (472)
+++.+.. +|+ .+.+.-- + -.+.+|++.|.+++.++|+|++.++..+...+.+++..+.|.++..
T Consensus 297 k~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 297 KRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 7776653 221 1100000 0 2357899999999999999998887777788787777666665544
No 97
>PLN00142 sucrose synthase
Probab=98.29 E-value=0.0015 Score=68.32 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=46.2
Q ss_pred cCcEEee---cCcc-hHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHH----h
Q 012061 357 VGGFVSH---GGWN-SLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDL----M 428 (472)
Q Consensus 357 ~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~----l 428 (472)
.++||.- =|.| ++.||+++|+|+|+....+ ....++.-.-|..+ +.. ++++++++|.++ +
T Consensus 667 aDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV------~P~--D~eaLA~aI~~lLekLl 734 (815)
T PLN00142 667 KGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHI------DPY--HGDEAANKIADFFEKCK 734 (815)
T ss_pred CCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEe------CCC--CHHHHHHHHHHHHHHhc
Confidence 4557753 4554 8999999999999975433 33444444568888 443 577777777654 4
Q ss_pred cCHHHHHHHH
Q 012061 429 ANDFLREQAK 438 (472)
Q Consensus 429 ~~~~~~~~a~ 438 (472)
.|++.+++..
T Consensus 735 ~Dp~lr~~mg 744 (815)
T PLN00142 735 EDPSYWNKIS 744 (815)
T ss_pred CCHHHHHHHH
Confidence 6887665433
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.28 E-value=0.0024 Score=63.30 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred CCceeccCCChH---HHhcccCcCcEEeec---Cc-chHHHHHHhCCcEEecCCcccchhhHHHHH---hhCeeeEEeec
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSHG---GW-NSLVEAARHGVPLLVWPHFGDQKINAEAVE---RAGLGMWVRSW 407 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~G~G~~l~~~ 407 (472)
++|.+.+++|+. .+|+. ++++|+-. |. .++.||+++|+|.|+.-..+.- ...++ .-..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~--adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~--- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELST--ASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPTGFLA--- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHh--CeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCceEEe---
Confidence 678888999877 45644 44566422 22 4889999999999986533211 11122 23567666
Q ss_pred CCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 408 GWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
+ +++++++++.++++++
T Consensus 377 ---~----d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ---S----TAEEYAEAIEKILSLS 393 (419)
T ss_pred ---C----CHHHHHHHHHHHHhCC
Confidence 3 7899999999999864
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.0051 Score=64.25 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=63.0
Q ss_pred cCCceeccCCChH-HHhcccCcCcEEe---ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCC
Q 012061 337 DQGLVVKNWVDQD-KVLSHRAVGGFVS---HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGT 411 (472)
Q Consensus 337 ~~~~~~~~~~pq~-~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 411 (472)
.++|.+.+|.+.. .++.. +++||. +.|. ++++||+++|+|+|+.... -....+..-..|+.+ +
T Consensus 573 ~~~V~flG~~~dv~~ll~a--aDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~GlLv------~ 640 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQ--FNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGLTL------P 640 (694)
T ss_pred CCcEEEcCCcchHHHHHHh--cCEEEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEEEe------C
Confidence 3678888988754 56644 555765 4554 7999999999999998643 233445454578888 6
Q ss_pred cCCcCHHHHHHHHHHHh----cCHHHHHHHHHHH
Q 012061 412 ELRAKGDEIGLKIKDLM----ANDFLREQAKRIE 441 (472)
Q Consensus 412 ~~~~~~~~l~~~i~~~l----~~~~~~~~a~~l~ 441 (472)
.+..+++++.+++.+++ .++.+++++++..
T Consensus 641 ~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 641 ADTVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCCCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 66666667777776655 4667776665544
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=9.2e-05 Score=69.60 Aligned_cols=352 Identities=16% Similarity=0.156 Sum_probs=185.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEEcCCCCc-cchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHH
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHH-CRVTLITTYPTVS-LAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFL 90 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rG-h~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (472)
-+++-++++=.++-+..|.+++.+.+ .+..++.+..+.+ ..-...++.+....|. + .+.-++...
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pd----------y---~L~i~~~~~ 71 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPD----------Y---DLNIMKPGQ 71 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCC----------c---chhccccCC
Confidence 44555788899999999999999987 6666666655543 2223333111111111 1 111111122
Q ss_pred HHHHHHHHhHhhhhhhcC-CCCcEEEE--cCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCCCC
Q 012061 91 LRWEAIRRSAHLLAPLLS-PPLSALIT--DVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVE 167 (472)
Q Consensus 91 ~~~~~~~~~~~~~~~ll~-~~~D~vI~--D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 167 (472)
.+...+......+.++++ .+||+|++ |..-+.++..+|.+++||+...-..--
T Consensus 72 tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR------------------------ 127 (383)
T COG0381 72 TLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR------------------------ 127 (383)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc------------------------
Confidence 234555666678888898 99999995 444455667888999999764422200
Q ss_pred CCCCceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhcccccccceEEEcccccccHHHHHHHhcccccCCCC--CeeEe
Q 012061 168 FDDDFIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFVKSNGVLINSFDALEADTLVALNGRRVVAGLP--PVYAV 245 (472)
Q Consensus 168 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p--~v~~v 245 (472)
.++ .++|+-+ .+........ ..+.++ +.... ..++ -+.+ .++.+
T Consensus 128 t~~-------------~~~PEE~-------NR~l~~~~S~-----~hfapt--e~ar~--nLl~-----EG~~~~~Ifvt 173 (383)
T COG0381 128 TGD-------------LYFPEEI-------NRRLTSHLSD-----LHFAPT--EIARK--NLLR-----EGVPEKRIFVT 173 (383)
T ss_pred cCC-------------CCCcHHH-------HHHHHHHhhh-----hhcCCh--HHHHH--HHHH-----cCCCccceEEe
Confidence 000 0011111 1111111100 001111 00000 1111 1233 47777
Q ss_pred cccCCCCccCC--CCCCccchhhh-ccCCCCCceEEEeecccccCCHHHHHHHHHHHH----hCCCceEEEEeCCCCCcc
Q 012061 246 GPLLPCEFEKR--DDPSTSLILKW-LDDQPEGSVVYVSFGSRLALSMEQTKELGDGLL----SSGCRFLWVVKGKNVDKE 318 (472)
Q Consensus 246 Gpl~~~~~~~~--~~~~~~~~~~~-l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~----~~~~~~~~~~~~~~~~~~ 318 (472)
|....+.-... ...+..+...- +.. +.+..+.+++=-..+.. +.+..++.++. +. ..+.+++....
T Consensus 174 Gnt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~---- 246 (383)
T COG0381 174 GNTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHP---- 246 (383)
T ss_pred CChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCC----
Confidence 75433211000 00010002211 222 23347888764433333 44455555443 33 23444554311
Q ss_pred hhHHHHhhhhHHHHHHhh-cCCceec---cCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHH
Q 012061 319 DEESLKNVLGHELMEKIK-DQGLVVK---NWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEA 394 (472)
Q Consensus 319 ~~~~~~~~~p~~~~~~~~-~~~~~~~---~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 394 (472)
.....+. . ....+ .+++.+. +|.+...++.++ .+++|-.|. -.-||-..|+|.+++=...+||.
T Consensus 247 -~~~v~e~--~--~~~L~~~~~v~li~pl~~~~f~~L~~~a--~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---- 314 (383)
T COG0381 247 -RPRVREL--V--LKRLKNVERVKLIDPLGYLDFHNLMKNA--FLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---- 314 (383)
T ss_pred -ChhhhHH--H--HHHhCCCCcEEEeCCcchHHHHHHHHhc--eEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc----
Confidence 1111111 0 12222 2456544 466777888664 458887764 46789999999999988888886
Q ss_pred HHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 395 VERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 395 v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
..+.|.-+.+ ..+.+.|.+++.+++++++..+|......- .++|.++.++++-+......
T Consensus 315 ~v~agt~~lv---------g~~~~~i~~~~~~ll~~~~~~~~m~~~~np----Ygdg~as~rIv~~l~~~~~~ 374 (383)
T COG0381 315 GVEAGTNILV---------GTDEENILDAATELLEDEEFYERMSNAKNP----YGDGNASERIVEILLNYFDS 374 (383)
T ss_pred ceecCceEEe---------CccHHHHHHHHHHHhhChHHHHHHhcccCC----CcCcchHHHHHHHHHHHhhh
Confidence 2444554455 246799999999999999888665554443 67788888877777766543
No 101
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.22 E-value=1.2e-05 Score=64.14 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=75.9
Q ss_pred eEEEeecccccCC---HHHHHHHHHHHHhCCC-ceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCcee--ccCCCh-
Q 012061 276 VVYVSFGSRLALS---MEQTKELGDGLLSSGC-RFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVV--KNWVDQ- 348 (472)
Q Consensus 276 ~v~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~pq- 348 (472)
.+||+-||....+ .-.-.+....|.+.|+ +.+...|....... +......+..++.+ .+|-|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~----------d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFG----------DPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCC----------CHHHhhcccCCeEEEEEecCccH
Confidence 7999999985321 1112346677777776 56666766311111 11111112244443 356675
Q ss_pred HHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc----ccchhhHHHHHhhCeeeEE
Q 012061 349 DKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF----GDQKINAEAVERAGLGMWV 404 (472)
Q Consensus 349 ~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~G~G~~l 404 (472)
.+... +.+++|+|+|+||++|.|+.|+|.|+++-- ..|-.-|..+++.|.=..-
T Consensus 75 ~e~I~--~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C 132 (170)
T KOG3349|consen 75 TEDIR--SADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYC 132 (170)
T ss_pred HHHHh--hccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEe
Confidence 34453 356799999999999999999999999842 5799999999999875544
No 102
>PLN02949 transferase, transferring glycosyl groups
Probab=98.15 E-value=0.0082 Score=60.06 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=52.3
Q ss_pred cCCceeccCCChHH---HhcccCcCcEEe---ecCcc-hHHHHHHhCCcEEecCCcc---cchhhHHHHHhhC-eeeEEe
Q 012061 337 DQGLVVKNWVDQDK---VLSHRAVGGFVS---HGGWN-SLVEAARHGVPLLVWPHFG---DQKINAEAVERAG-LGMWVR 405 (472)
Q Consensus 337 ~~~~~~~~~~pq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~G-~G~~l~ 405 (472)
.+++.+.+++|+.+ +|+. ++++|+ +=|.| ++.||+++|+|.|+....+ |.-... ..| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~--a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGG--AVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLA- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHh--CcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccC-
Confidence 36788889998764 4544 445773 23444 7999999999999986533 111100 002 23333
Q ss_pred ecCCCCcCCcCHHHHHHHHHHHhc-CHHHH
Q 012061 406 SWGWGTELRAKGDEIGLKIKDLMA-NDFLR 434 (472)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~i~~~l~-~~~~~ 434 (472)
+ +++++++++.++++ +++.+
T Consensus 407 -----~----~~~~la~ai~~ll~~~~~~r 427 (463)
T PLN02949 407 -----T----TVEEYADAILEVLRMRETER 427 (463)
T ss_pred -----C----CHHHHHHHHHHHHhCCHHHH
Confidence 2 78999999999998 44433
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.12 E-value=0.0016 Score=65.69 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHhcccCcCcEEee---cCcc-hHHHHHHhCCcEEecCCcc--cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHH
Q 012061 350 KVLSHRAVGGFVSH---GGWN-SLVEAARHGVPLLVWPHFG--DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLK 423 (472)
Q Consensus 350 ~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~ 423 (472)
.++ +++++||.- -|.| +.+||+++|+|.|+....+ |.-.+...-.+.+.|..+ +. -+++++.++
T Consensus 352 ~~~--~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv------~~--~d~~~la~~ 421 (466)
T PRK00654 352 RIY--AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVF------DD--FNAEDLLRA 421 (466)
T ss_pred HHH--hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEe------CC--CCHHHHHHH
Confidence 445 455667753 3444 8899999999999865432 221111111233778888 43 368999999
Q ss_pred HHHHhc
Q 012061 424 IKDLMA 429 (472)
Q Consensus 424 i~~~l~ 429 (472)
|.++++
T Consensus 422 i~~~l~ 427 (466)
T PRK00654 422 LRRALE 427 (466)
T ss_pred HHHHHH
Confidence 999885
No 104
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.10 E-value=0.00021 Score=70.57 Aligned_cols=166 Identities=16% Similarity=0.240 Sum_probs=94.7
Q ss_pred ceEEEeecccccC-CHHHHHHHHHHHHhC--CCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHH-
Q 012061 275 SVVYVSFGSRLAL-SMEQTKELGDGLLSS--GCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDK- 350 (472)
Q Consensus 275 ~~v~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~- 350 (472)
+..+++.|..... ..+.+.+.+..+... +.++.|..-+ ++...+.+.... .+....+++.+.+|+++.+
T Consensus 230 ~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG---~g~~~~~l~~~~----~~~~~~~~V~f~G~v~~~e~ 302 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIG---GGPLEDTLKELA----ESKPENISVNFTGELSNSEV 302 (407)
T ss_pred CEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEe---CchHHHHHHHHH----HhcCCCceEEEecCCChHHH
Confidence 3566677877432 233333333333332 2356555433 122222222111 0111235788889999764
Q ss_pred --HhcccCcCcEEeecC----cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHH
Q 012061 351 --VLSHRAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKI 424 (472)
Q Consensus 351 --ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i 424 (472)
++..+++++||...- -++++||+++|+|+|+.... .....+.+.+.|..+ .. .-+.++++++|
T Consensus 303 ~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~~~G~l~------~~-~~~~~~la~~I 371 (407)
T cd04946 303 YKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNGGNGLLL------SK-DPTPNELVSSL 371 (407)
T ss_pred HHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCCCcEEEe------CC-CCCHHHHHHHH
Confidence 444455667876553 46899999999999986533 344555555588887 32 33689999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHH
Q 012061 425 KDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKEL 461 (472)
Q Consensus 425 ~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 461 (472)
.++++|++.++ ++++..++.+.+.=+.....+.|
T Consensus 372 ~~ll~~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 372 SKFIDNEEEYQ---TMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred HHHHhCHHHHH---HHHHHHHHHHHHHcCHHHhHHHh
Confidence 99999886553 34444444433344544444444
No 105
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.08 E-value=0.00032 Score=69.28 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=72.2
Q ss_pred CCceeccCCChHHHhcc-cCcCcEEee---------cCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEee
Q 012061 338 QGLVVKNWVDQDKVLSH-RAVGGFVSH---------GGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRS 406 (472)
Q Consensus 338 ~~~~~~~~~pq~~ll~~-~~~~~~I~H---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~ 406 (472)
+++.+.+|+|+.++..+ ..+++||.- -|. ++++||+++|+|+|+....+ ....++.-..|..+
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~lv-- 352 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWLV-- 352 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEEe--
Confidence 67889999998743221 445667753 244 57899999999999975432 33344444578887
Q ss_pred cCCCCcCCcCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 407 WGWGTELRAKGDEIGLKIKDLMA-NDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 407 ~~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+. -++++++++|.++++ |++.++ ++++..++.+...=+....++++.+-+.
T Consensus 353 ----~~--~d~~~la~ai~~l~~~d~~~~~---~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 353 ----PE--NDAQALAQRLAAFSQLDTDELA---PVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred ----CC--CCHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 43 368999999999998 886443 2333333222222355555555555443
No 106
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.06 E-value=0.0062 Score=59.47 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=62.8
Q ss_pred CCceeccCCChHH---HhcccCcCcEEe--------ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEe
Q 012061 338 QGLVVKNWVDQDK---VLSHRAVGGFVS--------HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVR 405 (472)
Q Consensus 338 ~~~~~~~~~pq~~---ll~~~~~~~~I~--------HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~ 405 (472)
+|+++.+++|+.+ .+++.++ +|. .++. +.+.|++++|+|+|+.++ ...++..+.+...
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv--~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~~~~~~~- 323 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDV--AILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYEDEVVLI- 323 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCE--EecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhcCcEEEe-
Confidence 7999999999774 4544444 442 2333 458999999999998763 2222333433334
Q ss_pred ecCCCCcCCcCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 406 SWGWGTELRAKGDEIGLKIKDLMAND-FLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
. -+++++.++|.+++.++ ..+.+ +..+ +.+ .-|-++.++++++.+.+
T Consensus 324 -----~---~d~~~~~~ai~~~l~~~~~~~~~--~~~~-~~~----~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 -----A---DDPEEFVAAIEKALLEDGPARER--RRLR-LAA----QNSWDARAAEMLEALQE 371 (373)
T ss_pred -----C---CCHHHHHHHHHHHHhcCCchHHH--HHHH-HHH----HCCHHHHHHHHHHHHHh
Confidence 2 27899999999977533 21111 1111 121 24556666677766654
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.01 E-value=0.0052 Score=62.15 Aligned_cols=166 Identities=14% Similarity=0.169 Sum_probs=84.4
Q ss_pred eEEEeecccccC-CHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH---HH
Q 012061 276 VVYVSFGSRLAL-SMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD---KV 351 (472)
Q Consensus 276 ~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~---~l 351 (472)
.+++..|..... ..+.+.+.+..+.+.+.++++ +|. +.. ...+.+ ..+.... ..++.+....+.. .+
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi-~G~----g~~--~~~~~l-~~~~~~~-~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVV-LGT----GDP--ELEEAL-RELAERY-PGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEE-ECC----CCH--HHHHHH-HHHHHHC-CCcEEEEEcCCHHHHHHH
Confidence 456666776432 244444444444444555544 443 110 111111 1111111 2456555555554 35
Q ss_pred hcccCcCcEEeec---Ccc-hHHHHHHhCCcEEecCCcc--cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 352 LSHRAVGGFVSHG---GWN-SLVEAARHGVPLLVWPHFG--DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 352 l~~~~~~~~I~Hg---G~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
+ +++++++.-. |.| +.+||+++|+|.|+....+ |.-.+...-...+.|..+ +. -+++++.++|.
T Consensus 363 ~--~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~------~~--~d~~~la~~i~ 432 (473)
T TIGR02095 363 Y--AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLF------EE--YDPGALLAALS 432 (473)
T ss_pred H--HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEe------CC--CCHHHHHHHHH
Confidence 5 5566677532 443 7899999999999875432 221111000122678887 33 37889999999
Q ss_pred HHhc----CHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 426 DLMA----NDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 426 ~~l~----~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+++. |++.+++ +++.. +...=|-.+.++++++-+.
T Consensus 433 ~~l~~~~~~~~~~~~---~~~~~---~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 433 RALRLYRQDPSLWEA---LQKNA---MSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred HHHHHHhcCHHHHHH---HHHHH---hccCCCcHHHHHHHHHHHH
Confidence 9886 6654432 33222 1222344555556555443
No 108
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00019 Score=56.25 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=68.5
Q ss_pred EEEeecccccCCHHHHHH--HHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCC--h-HHH
Q 012061 277 VYVSFGSRLALSMEQTKE--LGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVD--Q-DKV 351 (472)
Q Consensus 277 v~vs~GS~~~~~~~~~~~--~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p--q-~~l 351 (472)
+||+-||....-...+.. +..-.+.-..++|+.+|+. + ..| + .++.+.+|.- - ..+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~-----d------~kp------v--agl~v~~F~~~~kiQsl 62 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG-----D------IKP------V--AGLRVYGFDKEEKIQSL 62 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC-----C------ccc------c--cccEEEeechHHHHHHH
Confidence 789999983221222222 2211122334788888872 1 122 1 3345555543 2 244
Q ss_pred hcccCcCcEEeecCcchHHHHHHhCCcEEecCCcc--------cchhhHHHHHhhCeeeEE
Q 012061 352 LSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFG--------DQKINAEAVERAGLGMWV 404 (472)
Q Consensus 352 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~G~G~~l 404 (472)
.. +.+.+|+|||.||++.+++.++|.|++|-.. .|..-|..+++.+.=+..
T Consensus 63 i~--darIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~ 121 (161)
T COG5017 63 IH--DARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVAC 121 (161)
T ss_pred hh--cceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEE
Confidence 43 3446999999999999999999999999653 588889999999887666
No 109
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.92 E-value=0.011 Score=59.83 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=70.7
Q ss_pred eEEEeecccccC-CHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH---HH
Q 012061 276 VVYVSFGSRLAL-SMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD---KV 351 (472)
Q Consensus 276 ~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~---~l 351 (472)
.+++..|..... ..+.+.+.+..+.+.+.++++ +|.. .. ...+.+ ..+.... .+++.+..-.++. .+
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi-~G~g----~~--~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVI-LGSG----DP--EYEEAL-RELAARY-PGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEE-EecC----CH--HHHHHH-HHHHHhC-CCcEEEEEeCCHHHHHHH
Confidence 566667776432 244444555555444555544 3331 11 111111 1111111 2566544434443 34
Q ss_pred hcccCcCcEEeec---Cc-chHHHHHHhCCcEEecCCcc--cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 352 LSHRAVGGFVSHG---GW-NSLVEAARHGVPLLVWPHFG--DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 352 l~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
+ ..+++++.-. |. .+.+||+++|+|.|+....+ |.-.+...-.+.|.|..+ +. -+++++.+++.
T Consensus 368 ~--~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~------~~--~~~~~l~~~i~ 437 (476)
T cd03791 368 Y--AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVF------EG--YNADALLAALR 437 (476)
T ss_pred H--HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEe------CC--CCHHHHHHHHH
Confidence 5 4456677431 22 47899999999999865432 222111111134578888 43 36899999999
Q ss_pred HHhc
Q 012061 426 DLMA 429 (472)
Q Consensus 426 ~~l~ 429 (472)
++++
T Consensus 438 ~~l~ 441 (476)
T cd03791 438 RALA 441 (476)
T ss_pred HHHH
Confidence 9885
No 110
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.87 E-value=0.002 Score=63.13 Aligned_cols=112 Identities=18% Similarity=0.091 Sum_probs=71.0
Q ss_pred CCceeccCCChH---HHhcccCcCcEEeec----Cc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCC
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSHG----GW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGW 409 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~Hg----G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~ 409 (472)
.++.+.+++|+. .+++ .++++|... |. .+++||+++|+|+|+.... .+...++....|..+.
T Consensus 257 ~~v~~~G~~~~~~l~~~~~--~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~~~G~~l~---- 326 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYP--LADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEGITGYHLA---- 326 (380)
T ss_pred CcEEEeCCCCHHHHHHHHH--hCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccCCceEEEe----
Confidence 567888999865 4464 455577533 33 5788999999999998653 2344455555676541
Q ss_pred CCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 410 GTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 410 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+ ..++++++++|.++++|++.++ +++..++.....=+-.+.++.+.+.+.
T Consensus 327 -~--~~d~~~la~~I~~ll~d~~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 327 -E--PMTSDSIISDINRTLADPELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred -C--CCCHHHHHHHHHHHHcCHHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 2378999999999999987543 333333222222355555666666554
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.87 E-value=0.00039 Score=68.12 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=83.7
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHH-HHhhcCCceeccCCChHHH
Q 012061 273 EGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELM-EKIKDQGLVVKNWVDQDKV 351 (472)
Q Consensus 273 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~pq~~l 351 (472)
+..++|.||.+....+++.+....+-|++.+.-.+|....+. ...+.+. ..+. ..+..+.+++.++.++.+-
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~---~~~~~l~----~~~~~~Gv~~~Ri~f~~~~~~~eh 355 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA---SGEARLR----RRFAAHGVDPDRIIFSPVAPREEH 355 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST---THHHHHH----HHHHHTTS-GGGEEEEE---HHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH---HHHHHHH----HHHHHcCCChhhEEEcCCCCHHHH
Confidence 445999999999888999999999999999988999887631 1111121 1111 1123456777787776544
Q ss_pred h-cccCcCcEE---eecCcchHHHHHHhCCcEEecCCcccc-hhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHH
Q 012061 352 L-SHRAVGGFV---SHGGWNSLVEAARHGVPLLVWPHFGDQ-KINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKD 426 (472)
Q Consensus 352 l-~~~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~DQ-~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~ 426 (472)
| .+..++.++ ..+|.+|++|||+.|||+|.+|--.=. ..-|..+..+|+.-.+ ..+.++-.+.--+
T Consensus 356 l~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElI---------A~s~~eYv~~Av~ 426 (468)
T PF13844_consen 356 LRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELI---------ADSEEEYVEIAVR 426 (468)
T ss_dssp HHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB----------SSHHHHHHHHHH
T ss_pred HHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhc---------CCCHHHHHHHHHH
Confidence 3 234455565 457899999999999999999943222 3334456667887555 2356665555556
Q ss_pred HhcCHHHHHH
Q 012061 427 LMANDFLREQ 436 (472)
Q Consensus 427 ~l~~~~~~~~ 436 (472)
+-+|++++++
T Consensus 427 La~D~~~l~~ 436 (468)
T PF13844_consen 427 LATDPERLRA 436 (468)
T ss_dssp HHH-HHHHHH
T ss_pred HhCCHHHHHH
Confidence 7778877643
No 112
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.82 E-value=0.00057 Score=58.57 Aligned_cols=145 Identities=22% Similarity=0.231 Sum_probs=87.9
Q ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHHh--CCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHh-hcCCceeccCCCh
Q 012061 273 EGSVVYVSFGSRLA-LSMEQTKELGDGLLS--SGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKI-KDQGLVVKNWVDQ 348 (472)
Q Consensus 273 ~~~~v~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~pq 348 (472)
+++.+++..|.... -..+.+..++.-+.. .+.-.++++|. +.....+. ...+.. ...++.+.++.++
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~----~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~ 83 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGD----GEYKKELK-----NLIEKLNLKENIIFLGYVPD 83 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESH----CCHHHHHH-----HHHHHTTCGTTEEEEESHSH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcc----cccccccc-----cccccccccccccccccccc
Confidence 34467777888743 234444444444432 23334555552 11111111 111111 2367888899983
Q ss_pred H---HHhcccCcCcEEee----cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHH
Q 012061 349 D---KVLSHRAVGGFVSH----GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIG 421 (472)
Q Consensus 349 ~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~ 421 (472)
. .++.. ++++|+. +..+++.||+++|+|+|+. |...+...+...+.|..+ +.. +.+++.
T Consensus 84 ~~l~~~~~~--~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~~~g~~~------~~~--~~~~l~ 149 (172)
T PF00534_consen 84 DELDELYKS--SDIFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDGVNGFLF------DPN--DIEELA 149 (172)
T ss_dssp HHHHHHHHH--TSEEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTTTSEEEE------STT--SHHHHH
T ss_pred ccccccccc--ceeccccccccccccccccccccccceeec----cccCCceeeccccceEEe------CCC--CHHHHH
Confidence 3 66654 5568877 5667999999999999985 455666666666779999 544 899999
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q 012061 422 LKIKDLMANDFLREQAKRI 440 (472)
Q Consensus 422 ~~i~~~l~~~~~~~~a~~l 440 (472)
++|.++++|++.+++..+-
T Consensus 150 ~~i~~~l~~~~~~~~l~~~ 168 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKN 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHH
Confidence 9999999988666444443
No 113
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.73 E-value=0.00029 Score=68.18 Aligned_cols=134 Identities=15% Similarity=0.239 Sum_probs=84.0
Q ss_pred EEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH---HHhc
Q 012061 277 VYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD---KVLS 353 (472)
Q Consensus 277 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~---~ll~ 353 (472)
.++..|.... ...+..++++++..+.++++ +|. +...+.+.. -..+|+.+.+++|+. .+++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~----g~~~~~l~~---------~~~~~V~~~g~~~~~~~~~~~~ 260 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGD----GPELDRLRA---------KAGPNVTFLGRVSDEELRDLYA 260 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EEC----ChhHHHHHh---------hcCCCEEEecCCCHHHHHHHHH
Confidence 3455676642 33456677777777766544 443 122222221 123889999999985 4565
Q ss_pred ccCcCcEEe--ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 354 HRAVGGFVS--HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 354 ~~~~~~~I~--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
.++ ++|. .-|. .++.||+++|+|+|+....+ ....+++.+.|..+ +.. ++++++++|.++++|
T Consensus 261 ~ad--~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~------~~~--~~~~la~~i~~l~~~ 326 (351)
T cd03804 261 RAR--AFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILF------EEQ--TVESLAAAVERFEKN 326 (351)
T ss_pred hCC--EEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEe------CCC--CHHHHHHHHHHHHhC
Confidence 544 4663 3344 46789999999999986433 33334555678888 432 678899999999988
Q ss_pred H-HHHHHHHHH
Q 012061 431 D-FLREQAKRI 440 (472)
Q Consensus 431 ~-~~~~~a~~l 440 (472)
+ ..++++++.
T Consensus 327 ~~~~~~~~~~~ 337 (351)
T cd03804 327 EDFDPQAIRAH 337 (351)
T ss_pred cccCHHHHHHH
Confidence 7 444444443
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.65 E-value=0.013 Score=57.19 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=58.2
Q ss_pred CCceeccCCChH-HHhcccCcCcEEee--cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCC
Q 012061 338 QGLVVKNWVDQD-KVLSHRAVGGFVSH--GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELR 414 (472)
Q Consensus 338 ~~~~~~~~~pq~-~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~ 414 (472)
+++.+.++.++. .++..+++-++.++ |...+++||+++|+|+|+..... .....++.-..|..+ +.
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv------~~-- 329 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLV------PK-- 329 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEe------CC--
Confidence 567777766554 66766555334444 23468999999999999974331 123444445678887 43
Q ss_pred cCHHHHHHHHHHHhcCHHHH
Q 012061 415 AKGDEIGLKIKDLMANDFLR 434 (472)
Q Consensus 415 ~~~~~l~~~i~~~l~~~~~~ 434 (472)
-+.++++++|..+++|++.+
T Consensus 330 ~d~~~la~~i~~ll~~~~~~ 349 (372)
T cd04949 330 GDIEALAEAIIELLNDPKLL 349 (372)
T ss_pred CcHHHHHHHHHHHHcCHHHH
Confidence 36899999999999987543
No 115
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.008 Score=56.72 Aligned_cols=206 Identities=16% Similarity=0.106 Sum_probs=102.0
Q ss_pred eeEec-ccCCCCccCCCCCCccchhhhccCCCCCceEEEeecccccCCHHHHHHHHHH---HHh--CCCceEEEEeCCCC
Q 012061 242 VYAVG-PLLPCEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDG---LLS--SGCRFLWVVKGKNV 315 (472)
Q Consensus 242 v~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a---l~~--~~~~~~~~~~~~~~ 315 (472)
..||| |+...-+..++... +++-+....+++++.+--||-.+.-...+..+.++ |.. .+.+|+.-+.+
T Consensus 158 ~~yVGHpl~d~i~~~~~r~~---ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~--- 231 (381)
T COG0763 158 CTYVGHPLADEIPLLPDREA---AREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVN--- 231 (381)
T ss_pred eEEeCChhhhhccccccHHH---HHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc---
Confidence 78888 44433222222222 55555555666799999999743222233333333 332 34666665544
Q ss_pred CcchhHHHHhhhhHHHHHHhhcCCceecc-CCChH--HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCc-ccchhh
Q 012061 316 DKEDEESLKNVLGHELMEKIKDQGLVVKN-WVDQD--KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF-GDQKIN 391 (472)
Q Consensus 316 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~pq~--~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-~DQ~~n 391 (472)
...+... .. ..+..+....- -.++. ..+ .++++.+.-+|-. ++|+.-+|+|||+.=-. .=-..-
T Consensus 232 --~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~a~--~~aD~al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~i 299 (381)
T COG0763 232 --AKYRRII----EE---ALKWEVAGLSLILIDGEKRKAF--AAADAALAASGTA-TLEAALAGTPMVVAYKVKPITYFI 299 (381)
T ss_pred --HHHHHHH----HH---HhhccccCceEEecCchHHHHH--HHhhHHHHhccHH-HHHHHHhCCCEEEEEeccHHHHHH
Confidence 1111000 11 11111111111 12222 345 4456677777754 57899999999985211 112334
Q ss_pred HHHHHhhCeeeEEeec-CC----C-CcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 392 AEAVERAGLGMWVRSW-GW----G-TELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 392 a~~v~~~G~G~~l~~~-~~----~-~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
|++.......-..+.- ++ + -...++++.|.+++..++.|+.-++..++--+.+++.++.+.+++..++.+++.+
T Consensus 300 ak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 300 AKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLELL 379 (381)
T ss_pred HHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5555554322100000 00 0 1246889999999999999883333333333333333445556666666666544
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.56 E-value=0.073 Score=52.52 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=63.5
Q ss_pred EEEeecccccCCHHHHHHHHHHHHhCCCce-EEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCC-ChH---HH
Q 012061 277 VYVSFGSRLALSMEQTKELGDGLLSSGCRF-LWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWV-DQD---KV 351 (472)
Q Consensus 277 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-pq~---~l 351 (472)
+++..|............+++|+...+.++ ++++|.. .. ..+ .++...++. ++. .+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g----~~------~~~---------~~v~~~g~~~~~~~l~~~ 303 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF----SP------FTA---------GNVVNHGFETDKRKLMSA 303 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC----Cc------ccc---------cceEEecCcCCHHHHHHH
Confidence 333444422222334567888888765443 4455541 00 001 345555655 332 33
Q ss_pred hcccCcCcEEeec----CcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHH
Q 012061 352 LSHRAVGGFVSHG----GWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKI 424 (472)
Q Consensus 352 l~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i 424 (472)
+ .++++||.-. --++++||+++|+|+|+....+ ... +...+-|..+ +.+ ++++|++++
T Consensus 304 y--~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~~~G~lv------~~~--d~~~La~~~ 365 (405)
T PRK10125 304 L--NQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQKSGGKTV------SEE--EVLQLAQLS 365 (405)
T ss_pred H--HhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeCCcEEEE------CCC--CHHHHHhcc
Confidence 4 4455677643 2368999999999999997654 222 2333578888 443 667777654
No 117
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.54 E-value=0.0096 Score=53.03 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCceeccCCC-hHHHhcc-cCcCcEEeecC----cchHHHHHHhCCcEEecCCcccc
Q 012061 338 QGLVVKNWVD-QDKVLSH-RAVGGFVSHGG----WNSLVEAARHGVPLLVWPHFGDQ 388 (472)
Q Consensus 338 ~~~~~~~~~p-q~~ll~~-~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ 388 (472)
.|+.+.++++ .+.+-.. ..++++++-.. .++++||+++|+|+|+.+..+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 6788878863 2221111 23677888876 78999999999999998765543
No 118
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.42 E-value=0.067 Score=55.01 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=51.5
Q ss_pred ceeccCCChH-HHhcccCcCcEEeec---C-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCC
Q 012061 340 LVVKNWVDQD-KVLSHRAVGGFVSHG---G-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELR 414 (472)
Q Consensus 340 ~~~~~~~pq~-~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~ 414 (472)
+.+.++.++. .+++ ++++||.-+ | .++++||+++|+|+|+.-..+... +. .|.+..+ .
T Consensus 603 V~FLG~~dd~~~lya--saDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~g~nGll------~--- 665 (794)
T PLN02501 603 LNFLKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-SFPNCLT------Y--- 665 (794)
T ss_pred EEecCCCCCHHHHHH--hCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-ecCCeEe------c---
Confidence 5556777655 4774 455687632 3 368999999999999987654321 11 2333334 2
Q ss_pred cCHHHHHHHHHHHhcCHHH
Q 012061 415 AKGDEIGLKIKDLMANDFL 433 (472)
Q Consensus 415 ~~~~~l~~~i~~~l~~~~~ 433 (472)
-+.+++.++|.++|.|+.-
T Consensus 666 ~D~EafAeAI~~LLsd~~~ 684 (794)
T PLN02501 666 KTSEDFVAKVKEALANEPQ 684 (794)
T ss_pred CCHHHHHHHHHHHHhCchh
Confidence 2689999999999987753
No 119
>PLN02316 synthase/transferase
Probab=97.42 E-value=0.29 Score=53.28 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=63.5
Q ss_pred CCceeccCCChH---HHhcccCcCcEEeec---C-cchHHHHHHhCCcEEecCCcc--cchhh-------HHHHHhhCee
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSHG---G-WNSLVEAARHGVPLLVWPHFG--DQKIN-------AEAVERAGLG 401 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n-------a~~v~~~G~G 401 (472)
+++.+....+.. .++ +.+++|+.-. | -.+.+||+++|+|.|+....+ |.-.. +......+-|
T Consensus 900 ~rV~f~g~~de~lah~iy--aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIY--AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHH--HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 445554444543 345 6677788532 3 358999999999988864432 22111 1100112467
Q ss_pred eEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 402 MWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
..+ +. .+++.|..+|.+++.+. ....+.+++..++.+...=|-.+.++..++-+
T Consensus 978 flf------~~--~d~~aLa~AL~raL~~~--~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 978 FSF------DG--ADAAGVDYALNRAISAW--YDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred EEe------CC--CCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 777 33 47889999999998642 22223334444443333334444555554433
No 120
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.41 E-value=0.014 Score=58.98 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCceeccCCChHHHhcccCcCcEEeec----CcchHHHHHHhCCcEEecCCcccchhhHHHHHhh------CeeeEEeec
Q 012061 338 QGLVVKNWVDQDKVLSHRAVGGFVSHG----GWNSLVEAARHGVPLLVWPHFGDQKINAEAVERA------GLGMWVRSW 407 (472)
Q Consensus 338 ~~~~~~~~~pq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~------G~G~~l~~~ 407 (472)
+++.+.+..+-..+++. ++++|.-. --++++||+++|+|+|+.. .......++.. ..|..+
T Consensus 354 ~~V~f~G~~~v~~~l~~--aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv--- 424 (475)
T cd03813 354 DNVKFTGFQNVKEYLPK--LDVLVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVV--- 424 (475)
T ss_pred CeEEEcCCccHHHHHHh--CCEEEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEE---
Confidence 67888886666677854 55566443 3468999999999999953 33444445442 267777
Q ss_pred CCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 012061 408 GWGTELRAKGDEIGLKIKDLMANDFLREQAKR 439 (472)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 439 (472)
+. .+++++++++.++++|++.+++..+
T Consensus 425 ---~~--~d~~~la~ai~~ll~~~~~~~~~~~ 451 (475)
T cd03813 425 ---PP--ADPEALARAILRLLKDPELRRAMGE 451 (475)
T ss_pred ---CC--CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 43 3789999999999999876654433
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.19 E-value=0.0016 Score=53.22 Aligned_cols=127 Identities=22% Similarity=0.293 Sum_probs=64.8
Q ss_pred eEEEeecccc-cCCHHHHHH-HHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH-HHh
Q 012061 276 VVYVSFGSRL-ALSMEQTKE-LGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD-KVL 352 (472)
Q Consensus 276 ~v~vs~GS~~-~~~~~~~~~-~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~-~ll 352 (472)
+.++++|+.. ....+.+.+ ++..+.+...++-+.+-+. ..+ .+... ..+++.+.+|++.. .++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~---~~~--~l~~~---------~~~~v~~~g~~~e~~~~l 68 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN---GPD--ELKRL---------RRPNVRFHGFVEELPEIL 68 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE---SS---HHCCH---------HHCTEEEE-S-HHHHHHH
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC---CHH--HHHHh---------cCCCEEEcCCHHHHHHHH
Confidence 3455666653 234554444 6666655333343333331 011 11111 12789999999533 667
Q ss_pred cccCcCcEEee--cC-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 353 SHRAVGGFVSH--GG-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 353 ~~~~~~~~I~H--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
+..++.+..+. .| .+++.|++++|+|+|+.+. .....++..+.|..+ . -+++++.++|+++++
T Consensus 69 ~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~------~---~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 69 AAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLV------A---NDPEELAEAIERLLN 134 (135)
T ss_dssp HC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE-------T---T-HHHHHHHHHHHHH
T ss_pred HhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEE------C---CCHHHHHHHHHHHhc
Confidence 55555333332 22 4899999999999999865 123334446788766 2 278999999999986
Q ss_pred C
Q 012061 430 N 430 (472)
Q Consensus 430 ~ 430 (472)
|
T Consensus 135 d 135 (135)
T PF13692_consen 135 D 135 (135)
T ss_dssp -
T ss_pred C
Confidence 5
No 122
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.04 E-value=0.02 Score=56.91 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=80.9
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH---
Q 012061 273 EGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD--- 349 (472)
Q Consensus 273 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~--- 349 (472)
+.-+||.+|--....+++.++..++-|++.+-.++|....+..+... +.... +. -...++.+.+.+-+.-.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~r---f~ty~-~~--~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQR---FRTYA-EQ--LGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHH---HHHHH-HH--hCCCccceeeccccchHHHH
Confidence 44589999988888899999999999999999999999875433211 11110 00 11223455544433321
Q ss_pred --HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHH-HHHhhCeeeEE
Q 012061 350 --KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAE-AVERAGLGMWV 404 (472)
Q Consensus 350 --~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~-~v~~~G~G~~l 404 (472)
-.|..-..+-+.+. |..|.++.|+.|||||.+|.-.--...|. .+..+|+|-.+
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli 887 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI 887 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH
Confidence 22322233445554 78999999999999999997654444433 35667988765
No 123
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.91 E-value=0.08 Score=53.63 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCceeccCCChHHHhcccCcCcEEe---ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcC
Q 012061 338 QGLVVKNWVDQDKVLSHRAVGGFVS---HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTEL 413 (472)
Q Consensus 338 ~~~~~~~~~pq~~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~ 413 (472)
+++.+.++.+...++..++ ++|. .=|. .+++||+++|+|+|+.-..+ -+...++.-.-|..+ +..
T Consensus 376 ~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv------~~~ 444 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLI------PID 444 (500)
T ss_pred CeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEE------eCC
Confidence 5678889888888886654 4775 2343 68999999999999975421 133344444567777 311
Q ss_pred --CcC----HHHHHHHHHHHhcCH
Q 012061 414 --RAK----GDEIGLKIKDLMAND 431 (472)
Q Consensus 414 --~~~----~~~l~~~i~~~l~~~ 431 (472)
.-+ .++++++|.++++++
T Consensus 445 ~~~~d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 445 EEEDDEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred ccccchhHHHHHHHHHHHHHhChH
Confidence 112 788999999999644
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.90 E-value=0.0068 Score=58.13 Aligned_cols=108 Identities=20% Similarity=0.379 Sum_probs=73.7
Q ss_pred CCceeccCCChHHHhcc-c-CcCcEEeec-------Cc------chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeee
Q 012061 338 QGLVVKNWVDQDKVLSH-R-AVGGFVSHG-------GW------NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGM 402 (472)
Q Consensus 338 ~~~~~~~~~pq~~ll~~-~-~~~~~I~Hg-------G~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~ 402 (472)
+|+.+.+|+|+.++..+ . +.+++...- .+ +-+.+.+++|+|+|+. ++...+..+++.++|+
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~~~G~ 282 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVENGLGF 282 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhCCceE
Confidence 78999999998866432 2 332222211 11 1277789999999986 4677888899999999
Q ss_pred EEeecCCCCcCCcCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 403 WVRSWGWGTELRAKGDEIGLKIKDLMAN--DFLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 403 ~l~~~~~~~~~~~~~~~l~~~i~~~l~~--~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
.+ + +.+++.+++..+..+ .++++|++++++.++. |--..+++++++.
T Consensus 283 ~v------~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 283 VV------D----SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred Ee------C----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 99 5 567899999886432 2477888888888664 4444445555443
No 125
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.77 E-value=0.35 Score=45.60 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=38.6
Q ss_pred ChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHH---HHhhCeeeEE
Q 012061 347 DQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEA---VERAGLGMWV 404 (472)
Q Consensus 347 pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~---v~~~G~G~~l 404 (472)
|+...|+.++. .|||---.+.+.||+..|+|+.++|...-.....+. +++.|+-..+
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~ 280 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPF 280 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEEC
Confidence 56688876554 455555669999999999999999988622233333 4444655544
No 126
>PHA01633 putative glycosyl transferase group 1
Probab=96.74 E-value=0.075 Score=50.54 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=53.4
Q ss_pred CCceec---cCCChH---HHhcccCcCcEEee---cCc-chHHHHHHhCCcEEecCC------cccc------hhhHHHH
Q 012061 338 QGLVVK---NWVDQD---KVLSHRAVGGFVSH---GGW-NSLVEAARHGVPLLVWPH------FGDQ------KINAEAV 395 (472)
Q Consensus 338 ~~~~~~---~~~pq~---~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~------~~DQ------~~na~~v 395 (472)
+++.+. +++++. .++ +++++||.- =|+ .+++||+++|+|+|+--. .+|+ ..+....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y--~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFY--GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHH--HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 567776 455554 445 445668864 244 578999999999998632 2333 3333333
Q ss_pred H--hhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 396 E--RAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 396 ~--~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
. +.|.|..+ + ..++++++++|.+++.
T Consensus 279 ~~~~~g~g~~~------~--~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 279 YDKEHGQKWKI------H--KFQIEDMANAIILAFE 306 (335)
T ss_pred cCcccCceeee------c--CCCHHHHHHHHHHHHh
Confidence 3 24677666 3 4689999999999954
No 127
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.69 E-value=0.018 Score=43.41 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=54.6
Q ss_pred ecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhC-eeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 012061 363 HGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAG-LGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRIE 441 (472)
Q Consensus 363 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~ 441 (472)
+|-..-+.|++++|+|+|+-+. ...... -..| -++.. + +.+++.++|+.+++|+..+ ++++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~-~~~~~~~~~~------~----~~~el~~~i~~ll~~~~~~---~~ia 70 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREI-FEDGEHIITY------N----DPEELAEKIEYLLENPEER---RRIA 70 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHH-cCCCCeEEEE------C----CHHHHHHHHHHHHCCHHHH---HHHH
Confidence 4555689999999999999864 222222 2223 34444 2 8999999999999999755 3444
Q ss_pred HHHHHHhccCCChHHHHHHHHH
Q 012061 442 EEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 442 ~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
+..++.+...=+....+++|++
T Consensus 71 ~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 71 KNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHHHHHhCCHHHHHHHHHC
Confidence 4444444445666666776653
No 128
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.55 E-value=0.25 Score=48.77 Aligned_cols=178 Identities=13% Similarity=0.225 Sum_probs=102.6
Q ss_pred hhccCCCCCceEEEeecccccC------C----HHHHHHHHHHHHhCCCceEEEEeCCC---CCcchhHHHHhhhhHHHH
Q 012061 266 KWLDDQPEGSVVYVSFGSRLAL------S----MEQTKELGDGLLSSGCRFLWVVKGKN---VDKEDEESLKNVLGHELM 332 (472)
Q Consensus 266 ~~l~~~~~~~~v~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 332 (472)
.|+...+.+++|-|+....... . .+.+.++++.|.+.|.+++++.-... ...++.. .-..+.
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~-----~~~~l~ 300 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM-----VALNLR 300 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH-----HHHHHH
Confidence 4554434455788876543211 1 23344566666566888776643210 0112211 012222
Q ss_pred HHhhc-CCc--eeccCCChH--HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeE-Eee
Q 012061 333 EKIKD-QGL--VVKNWVDQD--KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMW-VRS 406 (472)
Q Consensus 333 ~~~~~-~~~--~~~~~~pq~--~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~-l~~ 406 (472)
+.+.. .++ +..++-+.. .++ +.|+++|..= .-++.-|+..|||.+.+++ | +.....++..|..-. .
T Consensus 301 ~~~~~~~~~~vi~~~~~~~e~~~iI--s~~dl~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~-- 372 (426)
T PRK10017 301 QHVSDPARYHVVMDELNDLEMGKIL--GACELTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAI-- 372 (426)
T ss_pred HhcccccceeEecCCCChHHHHHHH--hhCCEEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEe--
Confidence 33321 222 222333443 667 4577788643 3356668899999999997 3 455555688888766 5
Q ss_pred cCCCCcCCcCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 407 WGWGTELRAKGDEIGLKIKDLMAND-FLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 407 ~~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+...++.++|.+.+.++++|. +++++.++..+++++ .+.+.+.++++.+-
T Consensus 373 ----~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 373 ----DIRHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred ----chhhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 677889999999999999874 566665555555554 33445666666554
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.03 Score=55.40 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=84.5
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHH-HHHhhcCCceeccCCChHH
Q 012061 272 PEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHEL-MEKIKDQGLVVKNWVDQDK 350 (472)
Q Consensus 272 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~pq~~ 350 (472)
|++-+||+||+......++.+...+.-|+..+--++|..+++ +.+++...+-+-+ .+.+..+.+++.+-.|...
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-----~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-----DDAEINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-----CcHHHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 345599999999988899999998888888888999998772 3344443332211 1223346667777776553
Q ss_pred Hhc-ccCcCcEEe---ecCcchHHHHHHhCCcEEecCCcccchh--hHHHH-HhhCeeeEE
Q 012061 351 VLS-HRAVGGFVS---HGGWNSLVEAARHGVPLLVWPHFGDQKI--NAEAV-ERAGLGMWV 404 (472)
Q Consensus 351 ll~-~~~~~~~I~---HgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~v-~~~G~G~~l 404 (472)
-++ |.-.++|.- -||+.|+.|+|+.|||+|.++ ++|+. |+.-+ ...|+--.+
T Consensus 502 h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 502 HRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred HHHhhchhheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 322 233444654 589999999999999999996 77753 33333 334665444
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.20 E-value=1 Score=41.52 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=63.7
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEEcCCCC--ccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHH-HHHH
Q 012061 18 SAGMGHLTPFLRLAASLVQHHCRVTLITTYPTV--SLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFL-LRWE 94 (472)
Q Consensus 18 ~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (472)
.+-.-|+.-+..|-+.|.++||+|.+.+-.... +.+...| +........ +...+. .+..
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg---------------f~~~~Igk~---g~~tl~~Kl~~ 68 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG---------------FPYKSIGKH---GGVTLKEKLLE 68 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC---------------CCeEeeccc---CCccHHHHHHH
Confidence 344568999999999999999999877643210 1111122 111111111 111122 2112
Q ss_pred HHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccH
Q 012061 95 AIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTASA 143 (472)
Q Consensus 95 ~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~ 143 (472)
... ..-.+.+++. .+||+.+. - ..+-+..+|.-+|+|.+++.-..-
T Consensus 69 ~~e-R~~~L~ki~~~~kpdv~i~-~-~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 69 SAE-RVYKLSKIIAEFKPDVAIG-K-HSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHH-HHHHHHHHHhhcCCceEee-c-CCcchhhHHhhcCCceEEecCChh
Confidence 211 1225667777 89999999 4 566899999999999998866543
No 131
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=96.08 E-value=0.76 Score=46.01 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=69.0
Q ss_pred cCCChHHHhcc-cCcCcEEe---ecCc-chHHHHHHhCCc----EEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCC
Q 012061 344 NWVDQDKVLSH-RAVGGFVS---HGGW-NSLVEAARHGVP----LLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELR 414 (472)
Q Consensus 344 ~~~pq~~ll~~-~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~ 414 (472)
+.+++.++.+. ..+++|+. +=|. .+..|++++|+| +|+--+.+-. ..+ +-|+.+ ++
T Consensus 342 ~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l---~~gllV------nP-- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL---NGALLV------NP-- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh---CCcEEE------CC--
Confidence 45666644322 55666776 4465 588899999999 6665544322 222 347777 33
Q ss_pred cCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 415 AKGDEIGLKIKDLMAND--FLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 415 ~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
.++++++++|.++|+++ +.+++.+++.+.+.+ -+...-+++|++++.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 37899999999999843 466666666666554 488888888888774
No 132
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.01 E-value=0.5 Score=47.84 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=43.6
Q ss_pred CCceeccCCChH-HHhcccCcCcEEee---cC-cchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEE
Q 012061 338 QGLVVKNWVDQD-KVLSHRAVGGFVSH---GG-WNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWV 404 (472)
Q Consensus 338 ~~~~~~~~~pq~-~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l 404 (472)
+++.+.+|.+.. .++ ..+++||.. -| -++++||+++|+|+|+... .-+...+.+-..|..+
T Consensus 455 d~V~FlG~~~Dv~~~L--aaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG~nG~LV 520 (578)
T PRK15490 455 ERILFVGASRDVGYWL--QKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEGVSGFIL 520 (578)
T ss_pred CcEEECCChhhHHHHH--HhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccCCcEEEE
Confidence 678888886543 556 445668853 45 4699999999999998754 3345556666788888
No 133
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.93 E-value=0.0062 Score=46.15 Aligned_cols=49 Identities=16% Similarity=0.349 Sum_probs=42.0
Q ss_pred hhhhccCCCCCceEEEeecccccC---C--HHHHHHHHHHHHhCCCceEEEEeC
Q 012061 264 ILKWLDDQPEGSVVYVSFGSRLAL---S--MEQTKELGDGLLSSGCRFLWVVKG 312 (472)
Q Consensus 264 ~~~~l~~~~~~~~v~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~~~~~~~ 312 (472)
+..|+...+.++.|+||+||.... . ...+..++++++.++..++..+..
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~ 83 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPA 83 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETT
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCH
Confidence 788999999999999999998543 2 257889999999999999888876
No 134
>PRK14098 glycogen synthase; Provisional
Probab=95.67 E-value=0.29 Score=49.56 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=85.4
Q ss_pred eEEEeecccccC-CHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChH---HH
Q 012061 276 VVYVSFGSRLAL-SMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQD---KV 351 (472)
Q Consensus 276 ~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~---~l 351 (472)
.+++..|..... ..+.+.+.+..+.+.+.+++ ++|.. .....+.+. .+.++. .+++.+.+.++.. .+
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lv-ivG~G--~~~~~~~l~-----~l~~~~-~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLV-ICGSG--DKEYEKRFQ-----DFAEEH-PEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEE-EEeCC--CHHHHHHHH-----HHHHHC-CCCEEEEEecCHHHHHHH
Confidence 455666766432 24444444444444455543 44431 000011111 111221 3678787888765 45
Q ss_pred hcccCcCcEEeec---Cc-chHHHHHHhCCcEEecCCcc--cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 352 LSHRAVGGFVSHG---GW-NSLVEAARHGVPLLVWPHFG--DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 352 l~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
+ +.+++|+.-. |. .+.+||+++|+|.|+....+ |...+ ..+..+.|..+ +. -+++++.++|.
T Consensus 379 ~--a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~------~~--~d~~~la~ai~ 446 (489)
T PRK14098 379 I--AGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIF------HD--YTPEALVAKLG 446 (489)
T ss_pred H--HhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEe------CC--CCHHHHHHHHH
Confidence 5 5566688643 22 37889999999888876432 22110 11123678777 33 36899999999
Q ss_pred HHh---cCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 426 DLM---ANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 426 ~~l---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+++ +|++.. +++++ +++...=|-++.+++.++-+.
T Consensus 447 ~~l~~~~~~~~~---~~~~~---~~~~~~fsw~~~a~~y~~lY~ 484 (489)
T PRK14098 447 EALALYHDEERW---EELVL---EAMERDFSWKNSAEEYAQLYR 484 (489)
T ss_pred HHHHHHcCHHHH---HHHHH---HHhcCCCChHHHHHHHHHHHH
Confidence 876 455332 22222 222233354555566555444
No 135
>PHA01630 putative group 1 glycosyl transferase
Probab=95.55 E-value=0.91 Score=43.41 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=61.2
Q ss_pred cCCChH---HHhcccCcCcEEe---ecC-cchHHHHHHhCCcEEecCCcc--cchh---hHHHHHh-----------hCe
Q 012061 344 NWVDQD---KVLSHRAVGGFVS---HGG-WNSLVEAARHGVPLLVWPHFG--DQKI---NAEAVER-----------AGL 400 (472)
Q Consensus 344 ~~~pq~---~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~--DQ~~---na~~v~~-----------~G~ 400 (472)
.+++.. .++ ..+++|+. ..| ..+++||+++|+|+|+.-..+ |.-. |+-.+.. .++
T Consensus 196 ~~v~~~~l~~~y--~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLF--AGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHH--HhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 346655 345 44555763 333 458999999999999976432 2211 1111100 134
Q ss_pred eeEEeecCCCCcCCcCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 401 GMWVRSWGWGTELRAKGDEIGLKIKDLMAN---DFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 401 G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
|..+ + .+.+++.+++.++|.| ++++++.+.-++...+ .=+-.+.++++.+-+.
T Consensus 274 G~~v------~---~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 274 GYFL------D---PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILE 329 (331)
T ss_pred cccc------C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Confidence 4444 2 2567888888888876 4566555544444333 2466666666666554
No 136
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.53 E-value=0.021 Score=47.62 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHHHHHHHHHhHhhhhh
Q 012061 26 PFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLLRWEAIRRSAHLLAP 105 (472)
Q Consensus 26 P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (472)
-+..|+++|+++||+|+++++.......+.. .. .+.+...+..... ..... .. ....+.+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~----~~~~~-~~----~~~~~~~ 65 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE--------ED---GVRVHRLPLPRRP----WPLRL-LR----FLRRLRR 65 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE--------ET---TEEEEEE--S-SS----SGGGH-CC----HHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc--------cC---CceEEeccCCccc----hhhhh-HH----HHHHHHH
Confidence 4678999999999999999976443321100 01 1223222222111 00000 00 1123445
Q ss_pred hc--C-CCCcEEEEcCCChhhhHHHHH-hcCCCeEEEeC
Q 012061 106 LL--S-PPLSALITDVTLISAVLPVTI-NLHLPNYVLFT 140 (472)
Q Consensus 106 ll--~-~~~D~vI~D~~~~~~~~~vA~-~lgIP~v~~~~ 140 (472)
++ + .+||+|.+..........+++ ..++|++....
T Consensus 66 ~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 66 LLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 55 5 799999987722333444555 78999876643
No 137
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.32 E-value=0.34 Score=39.51 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=57.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHH
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLL 91 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (472)
+|++++-....| ...+++.|.++||+|++++.....+.... .. .+.....+.. . ...+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~---~i~~~~~~~~---~--k~~~-- 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---------IE---GIKVIRLPSP---R--KSPL-- 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---------hC---CeEEEEecCC---C--CccH--
Confidence 367777766566 45789999999999999998543211110 01 1222222111 0 1111
Q ss_pred HHHHHHHhHhhhhhhcC-CCCcEEEEcCCCh--hhhHHHHHhcC-CCeEEEe
Q 012061 92 RWEAIRRSAHLLAPLLS-PPLSALITDVTLI--SAVLPVTINLH-LPNYVLF 139 (472)
Q Consensus 92 ~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~--~~~~~vA~~lg-IP~v~~~ 139 (472)
..+. . -.+.++++ .+||+|.+-.... ..+..+++..| +|.+...
T Consensus 59 --~~~~-~-~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 59 --NYIK-Y-FRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred --HHHH-H-HHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1121 1 25677888 8999998766222 22334567788 8877443
No 138
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=95.11 E-value=0.81 Score=46.02 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=61.6
Q ss_pred eccCCChHHHhcc-cCcCcEEe---ecCc-chHHHHHHhCCc----EEecCCcccchhhHHHHHhhCeeeEEeecCCCCc
Q 012061 342 VKNWVDQDKVLSH-RAVGGFVS---HGGW-NSLVEAARHGVP----LLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 342 ~~~~~pq~~ll~~-~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 412 (472)
+.+++++.++... ..+++||. +-|. .++.||+++|+| +|+--..+ -... ..-|+.+ +.
T Consensus 345 ~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~~~------~~~g~lv------~p 411 (460)
T cd03788 345 LYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AAEE------LSGALLV------NP 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEecccc-chhh------cCCCEEE------CC
Confidence 3467777644221 44555774 4465 477999999999 44432222 1110 2346666 33
Q ss_pred CCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMAND--FLREQAKRIEEEARKAIGVGGSSERTFKELIDKW 465 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (472)
-+.++++++|.++++++ +.+++.++..+.+.+ -+...-++.++.++
T Consensus 412 --~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 412 --YDIDEVADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred --CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 36899999999999864 233333444444332 47777777777665
No 139
>PRK14099 glycogen synthase; Provisional
Probab=93.90 E-value=3 Score=42.23 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=50.0
Q ss_pred eeccCCChHHHhcccCcCcEEe---ecCc-chHHHHHHhCCcEEecCCcc--cchhhHHHHH---hhCeeeEEeecCCCC
Q 012061 341 VVKNWVDQDKVLSHRAVGGFVS---HGGW-NSLVEAARHGVPLLVWPHFG--DQKINAEAVE---RAGLGMWVRSWGWGT 411 (472)
Q Consensus 341 ~~~~~~pq~~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~---~~G~G~~l~~~~~~~ 411 (472)
.+.+|-....-+-++.+++|+. +=|. .+.+||+++|+|.|+....+ |--....... ..+.|..+ +
T Consensus 354 ~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~------~ 427 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF------S 427 (485)
T ss_pred EEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe------C
Confidence 4556633222111245677885 3444 37789999997766654322 3221111111 11568888 4
Q ss_pred cCCcCHHHHHHHHHH---HhcCHHHHHHH
Q 012061 412 ELRAKGDEIGLKIKD---LMANDFLREQA 437 (472)
Q Consensus 412 ~~~~~~~~l~~~i~~---~l~~~~~~~~a 437 (472)
. -+++++.++|.+ +++|++.+++.
T Consensus 428 ~--~d~~~La~ai~~a~~l~~d~~~~~~l 454 (485)
T PRK14099 428 P--VTADALAAALRKTAALFADPVAWRRL 454 (485)
T ss_pred C--CCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3 378999999987 56677655433
No 140
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.61 E-value=0.58 Score=39.80 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=55.5
Q ss_pred CCCccChHHHHHHHHHH-HhC-CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHHHHHH
Q 012061 18 SAGMGHLTPFLRLAASL-VQH-HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLLRWEA 95 (472)
Q Consensus 18 ~~~~GHi~P~l~La~~L-~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (472)
.++-||..=|+.|.+.+ .++ .++..+++..+..+..... ++......- ..+...+. ...-........+..
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~---~~~~~~~~~--~~~~~~~r--~r~v~q~~~~~~~~~ 77 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAE---QLEKSSSKR--HKILEIPR--AREVGQSYLTSIFTT 77 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHH---HHHHhcccc--ceeeccce--EEEechhhHhhHHHH
Confidence 45559999999999999 444 4555555544332221111 111111100 00111100 000011112223333
Q ss_pred HHHhHhhhhhhcCCCCcEEEEcC-CChhhhHHHHHhc------CCCeEEE
Q 012061 96 IRRSAHLLAPLLSPPLSALITDV-TLISAVLPVTINL------HLPNYVL 138 (472)
Q Consensus 96 ~~~~~~~~~~ll~~~~D~vI~D~-~~~~~~~~vA~~l------gIP~v~~ 138 (472)
+......+.-+.+.+||+||+.. ..+...+.+|+.+ |.+.|..
T Consensus 78 l~~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 78 LRAFLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 33333233222225899999888 4444666788888 9997755
No 141
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.31 E-value=9.4 Score=35.38 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=36.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccch
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAE 54 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~ 54 (472)
||+++-..+.|++.-...+.++|+++ +-+|++++.+...+..+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 58999999999999999999999996 48999999876544443
No 142
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.30 E-value=1.3 Score=40.64 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=62.1
Q ss_pred cCCChHHHhcccCcCcEEeecCcchHHH-HHHhCCcEEecCCcccc--hhhHHHHHhh-CeeeEEeecCCCCcCCcCHHH
Q 012061 344 NWVDQDKVLSHRAVGGFVSHGGWNSLVE-AARHGVPLLVWPHFGDQ--KINAEAVERA-GLGMWVRSWGWGTELRAKGDE 419 (472)
Q Consensus 344 ~~~pq~~ll~~~~~~~~I~HgG~~s~~e-al~~GvP~l~~P~~~DQ--~~na~~v~~~-G~G~~l~~~~~~~~~~~~~~~ 419 (472)
.|-...++|.++++ .|-- .||..| ++-.|||+|.+|-.+-| +..|.+=.++ |+.+.+- . ..+..
T Consensus 301 sqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv------~--~~aq~ 368 (412)
T COG4370 301 SQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV------R--PEAQA 368 (412)
T ss_pred eHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec------C--Cchhh
Confidence 33344455544433 2222 234433 57789999999999999 4566665555 9998872 1 12333
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 012061 420 IGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELID 463 (472)
Q Consensus 420 l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (472)
-..+.+++|.|+.+.++++.=.++ -++..|.+.++++.+-+
T Consensus 369 a~~~~q~ll~dp~r~~air~nGqr---RiGqaGaa~rIAe~l~e 409 (412)
T COG4370 369 AAQAVQELLGDPQRLTAIRHNGQR---RIGQAGAARRIAEELGE 409 (412)
T ss_pred HHHHHHHHhcChHHHHHHHhcchh---hccCcchHHHHHHHHHH
Confidence 344444599999888777644433 24444665556555544
No 143
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=92.22 E-value=2.2 Score=45.64 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=66.6
Q ss_pred eeccCCChHHHhcc-cCcCcEEee---cCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCc
Q 012061 341 VVKNWVDQDKVLSH-RAVGGFVSH---GGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRA 415 (472)
Q Consensus 341 ~~~~~~pq~~ll~~-~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~ 415 (472)
.+.+++++.++..+ ..+++|+.- -|. .++.|++++|+|-...|+..+----+. ++.-|+.+ ++ .
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~l~~~llv------~P--~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---ELAEALLV------NP--N 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH---HhCcCeEE------CC--C
Confidence 34467887744322 455557754 354 588999999775211121111111111 22237777 43 3
Q ss_pred CHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhc
Q 012061 416 KGDEIGLKIKDLMAND--FLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCN 468 (472)
Q Consensus 416 ~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (472)
++++++++|.++|+++ +.+++.+++.+.+++ -+...-++.|++.+.+.
T Consensus 414 d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 6899999999999843 455555555555443 47778888888877755
No 144
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.98 E-value=5.8 Score=40.48 Aligned_cols=79 Identities=11% Similarity=0.157 Sum_probs=54.5
Q ss_pred CCceeccCCCh--H-HHhcccCcCcEEeec---CcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCC
Q 012061 338 QGLVVKNWVDQ--D-KVLSHRAVGGFVSHG---GWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGT 411 (472)
Q Consensus 338 ~~~~~~~~~pq--~-~ll~~~~~~~~I~Hg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 411 (472)
..|.+.++.+. . .++ ..++++|.=+ |.++.+||+.+|+|+| .......|+...=|..+ +
T Consensus 409 ~~v~f~gy~~e~dl~~~~--~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li------~ 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISAL--DKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYII------D 473 (519)
T ss_pred cEEEEEecCCHHHHHHHH--hhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEe------C
Confidence 45677777773 2 556 4456688766 7789999999999999 22223334444456566 2
Q ss_pred cCCcCHHHHHHHHHHHhcCHHHHH
Q 012061 412 ELRAKGDEIGLKIKDLMANDFLRE 435 (472)
Q Consensus 412 ~~~~~~~~l~~~i~~~l~~~~~~~ 435 (472)
+..+|.++|..+|.+++-.+
T Consensus 474 ----d~~~l~~al~~~L~~~~~wn 493 (519)
T TIGR03713 474 ----DISELLKALDYYLDNLKNWN 493 (519)
T ss_pred ----CHHHHHHHHHHHHhCHHHHH
Confidence 67999999999999885333
No 145
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.80 E-value=5.8 Score=42.85 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCChH---HHhcccCcCcEEee---cCcc-hHHHHHHhCCc---EEecCCcccchhhHHHHHhhC-eeeEEeecCCCCcC
Q 012061 345 WVDQD---KVLSHRAVGGFVSH---GGWN-SLVEAARHGVP---LLVWPHFGDQKINAEAVERAG-LGMWVRSWGWGTEL 413 (472)
Q Consensus 345 ~~pq~---~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~~~ 413 (472)
+++.. .++ ..+++|+.- -|.| +..|++++|+| ++++.-++- .+.. +| .|+.+ ++
T Consensus 363 ~v~~~el~aly--~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~~~---l~~~allV------nP- 427 (797)
T PLN03063 363 SVDFNYLCALY--AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AGQS---LGAGALLV------NP- 427 (797)
T ss_pred CCCHHHHHHHH--HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC---chhh---hcCCeEEE------CC-
Confidence 45544 444 445557754 4775 77899999999 555543321 1111 34 57777 33
Q ss_pred CcCHHHHHHHHHHHhc-CHH-HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhcc
Q 012061 414 RAKGDEIGLKIKDLMA-NDF-LREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCNN 469 (472)
Q Consensus 414 ~~~~~~l~~~i~~~l~-~~~-~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (472)
.+.++++++|.++|+ +++ .+++.+++.+...+- +...-++.|++++.+..
T Consensus 428 -~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 428 -WNITEVSSAIKEALNMSDEERETRHRHNFQYVKTH-----SAQKWADDFMSELNDII 479 (797)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHHh
Confidence 378999999999998 543 445566666655543 67777888888776543
No 146
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=91.11 E-value=15 Score=35.39 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATD 87 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (472)
+++|+++-..+.|++.=...+.+.|+++ +.+|++++.+.+.+.++. +|.++.+ +. ++... ..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---------~P~id~v-i~---~~~~~---~~ 68 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE---------NPEINAL-YG---IKNKK---AG 68 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc---------CCCceEE-EE---ecccc---cc
Confidence 5789999999999999999999999996 899999998765544432 3333222 11 11100 00
Q ss_pred hHHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 88 PFLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
....+ .. ...+..-++ .++|++|.-. .......++...|.|..+-
T Consensus 69 ~~~~~----~~-~~~l~~~lr~~~yD~vidl~-~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 69 ASEKI----KN-FFSLIKVLRANKYDLIVNLT-DQWMVALLVRLLNARVKIS 114 (352)
T ss_pred HHHHH----HH-HHHHHHHHhhCCCCEEEEcc-cchHHHHHHHHhCCCeEEe
Confidence 00010 00 011223344 6899999655 4434556777778886543
No 147
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.80 E-value=1.4 Score=37.13 Aligned_cols=30 Identities=23% Similarity=0.167 Sum_probs=23.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 20 GMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 20 ~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
..|=-.-+..|+++|+++||+|+++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 446667789999999999999999987643
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=90.60 E-value=14 Score=40.15 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=56.6
Q ss_pred CCceeccCCChH---HHhcccCcCcEEeec---C-cchHHHHHHhCCcEEecCCcc--cchhh--HHHH-HhhCeeeEEe
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSHG---G-WNSLVEAARHGVPLLVWPHFG--DQKIN--AEAV-ERAGLGMWVR 405 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~G~G~~l~ 405 (472)
++|.+..+.+.. .++ +.+++||.-. | -.+.+||+++|+|.|+....+ |--.+ ...+ ++-+-|..+
T Consensus 837 drV~FlG~~de~lah~IY--AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf- 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIY--AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF- 913 (977)
T ss_pred CeEEEEeccCHHHHHHHH--HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe-
Confidence 568777888765 356 5567788642 2 348999999999999876543 22111 1111 123567777
Q ss_pred ecCCCCcCCcCHHHHHHHHHHHhc----CHHHHHHH
Q 012061 406 SWGWGTELRAKGDEIGLKIKDLMA----NDFLREQA 437 (472)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~i~~~l~----~~~~~~~a 437 (472)
+. .+++++.++|.+++. |++.+++.
T Consensus 914 -----~~--~D~eaLa~AL~rAL~~~~~dpe~~~~L 942 (977)
T PLN02939 914 -----LT--PDEQGLNSALERAFNYYKRKPEVWKQL 942 (977)
T ss_pred -----cC--CCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 33 378889988888764 66555433
No 149
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=90.02 E-value=9.8 Score=31.43 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=70.2
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhccc
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHR 355 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~ 355 (472)
.|-|-+||.. +....+++...|++.+..+-..+-+ .+...+++.+.+ +. +.+.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~s---aHR~p~~l~~~~-----~~-----------------~~~~ 54 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVAS---AHRTPERLLEFV-----KE-----------------YEAR 54 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE-----TTTSHHHHHHHH-----HH-----------------TTTT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEe---ccCCHHHHHHHH-----HH-----------------hccC
Confidence 4556667654 6778888999999988777555544 222222222111 11 1112
Q ss_pred CcCcEEeecCcchHHHHHH---hCCcEEecCCcccchhhHH---HHHhh--CeeeEEeecCCCCcCCcCHHHHHHHHHHH
Q 012061 356 AVGGFVSHGGWNSLVEAAR---HGVPLLVWPHFGDQKINAE---AVERA--GLGMWVRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~DQ~~na~---~v~~~--G~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
.++.||.=.|...-+-++. .-.|+|.+|...++..... -+.+. |+++..- ..+ +...-+-...++
T Consensus 55 ~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv-----~i~--~~~nAA~~A~~I 127 (150)
T PF00731_consen 55 GADVIIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATV-----GIN--NGFNAALLAARI 127 (150)
T ss_dssp TESEEEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE------SST--HHHHHHHHHHHH
T ss_pred CCEEEEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEE-----Ecc--CchHHHHHHHHH
Confidence 3455888777643333222 3689999998877543222 23333 6665430 111 223333333344
Q ss_pred h--cCHHHHHHHHHHHHHHHHH
Q 012061 428 M--ANDFLREQAKRIEEEARKA 447 (472)
Q Consensus 428 l--~~~~~~~~a~~l~~~~~~~ 447 (472)
| .|++++++.++.++++++.
T Consensus 128 La~~d~~l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 128 LALKDPELREKLRAYREKMKEK 149 (150)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcc
Confidence 4 5899999999988887753
No 150
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=89.94 E-value=3.7 Score=34.85 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=26.5
Q ss_pred hhhhhcC--CCCcEEEEcCCChhhhHHHHHhc-CCCeEEEeC
Q 012061 102 LLAPLLS--PPLSALITDVTLISAVLPVTINL-HLPNYVLFT 140 (472)
Q Consensus 102 ~~~~ll~--~~~D~vI~D~~~~~~~~~vA~~l-gIP~v~~~~ 140 (472)
.+.+|.+ ..||+||... -...++-+-..+ ++|.+.++-
T Consensus 56 a~~~L~~~Gf~PDvI~~H~-GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 56 AARQLRAQGFVPDVIIAHP-GWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHcCCCCCEEEEcC-CcchhhhHHHhCCCCcEEEEEE
Confidence 4445555 6899999998 544555666777 899887643
No 151
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=88.65 E-value=4 Score=37.31 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
|+|+++..-+. -..|++.|.++||+|+..+...+
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCC
Confidence 57777655443 67899999999999998776543
No 152
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=88.31 E-value=13 Score=37.12 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCceec-cCCChH--HHhcccCcCcEEeecCc--chHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCc
Q 012061 338 QGLVVK-NWVDQD--KVLSHRAVGGFVSHGGW--NSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~-~~~pq~--~ll~~~~~~~~I~HgG~--~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~ 412 (472)
+|++.. ++.++. .++..+++-+-|+||.- .++.||+.+|+|++..=...... ..+.. |-.+ ..
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~---g~l~------~~ 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS---ENIF------EH 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC---Ccee------cC
Confidence 566544 556633 88888888888888764 79999999999999875432211 11111 4444 22
Q ss_pred CCcCHHHHHHHHHHHhcCHH-HHHHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMANDF-LREQAKRIEEE 443 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~~~~-~~~~a~~l~~~ 443 (472)
-+.+++.++|.++|.|++ ++++..+-++.
T Consensus 396 --~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 396 --NEVDQLISKLKDLLNDPNQFRELLEQQREH 425 (438)
T ss_pred --CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 358999999999999884 45444444433
No 153
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.15 E-value=26 Score=32.67 Aligned_cols=87 Identities=23% Similarity=0.329 Sum_probs=55.0
Q ss_pred CCceeccCCChH---HHhcccCcCcEEee---cCcc-hHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 338 QGLVVKNWVDQD---KVLSHRAVGGFVSH---GGWN-SLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 338 ~~~~~~~~~pq~---~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
+++.+.++++.. .++.. +++++.- .|.| ++.|++++|+|+|... .......+...+.|...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~--~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~~~g~~~------ 324 (381)
T COG0438 257 DNVKFLGYVPDEELAELLAS--ADVFVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDGETGLLV------ 324 (381)
T ss_pred CcEEEecccCHHHHHHHHHh--CCEEEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCCCceEec------
Confidence 677778999832 44533 4456666 3554 4599999999997764 33233333333346633
Q ss_pred CcCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 012061 411 TELRAKGDEIGLKIKDLMANDFLREQAK 438 (472)
Q Consensus 411 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 438 (472)
... +.+++.+++..++++++.+++..
T Consensus 325 ~~~--~~~~~~~~i~~~~~~~~~~~~~~ 350 (381)
T COG0438 325 PPG--DVEELADALEQLLEDPELREELG 350 (381)
T ss_pred CCC--CHHHHHHHHHHHhcCHHHHHHHH
Confidence 222 68999999999998874444443
No 154
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=86.44 E-value=9.4 Score=36.19 Aligned_cols=43 Identities=5% Similarity=0.201 Sum_probs=37.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccch
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAE 54 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~ 54 (472)
||+++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 58999999999999999999999996 99999999876655544
No 155
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=83.46 E-value=7.6 Score=39.68 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=46.0
Q ss_pred ChHHHhcccCcCcEEe---ecCc-chHHHHHHhCCcEEecCCcccchhhHHHHHhhC--eeeEEe-ecCCCCcCCcCHHH
Q 012061 347 DQDKVLSHRAVGGFVS---HGGW-NSLVEAARHGVPLLVWPHFGDQKINAEAVERAG--LGMWVR-SWGWGTELRAKGDE 419 (472)
Q Consensus 347 pq~~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G--~G~~l~-~~~~~~~~~~~~~~ 419 (472)
+..+++ ..|++||. +=|+ .+.+||+++|+|+|+....+=- .....+...| .|+.+. |.. +.-..+.++
T Consensus 467 ~y~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~--~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRF--KSPDESVQQ 541 (590)
T ss_pred chHHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCc--cchHHHHHH
Confidence 355666 55667777 4465 4899999999999998653211 1112222222 566662 210 011234677
Q ss_pred HHHHHHHHhcC
Q 012061 420 IGLKIKDLMAN 430 (472)
Q Consensus 420 l~~~i~~~l~~ 430 (472)
|.+++.++++.
T Consensus 542 La~~m~~~~~~ 552 (590)
T cd03793 542 LTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHhCC
Confidence 88888888853
No 156
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=82.90 E-value=44 Score=31.72 Aligned_cols=290 Identities=16% Similarity=0.096 Sum_probs=136.6
Q ss_pred HHHHHHHhHhhhhhhcCCCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHHhhhhhhhhccCCCCCCCCCCCC
Q 012061 92 RWEAIRRSAHLLAPLLSPPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLTASFPAIVASKSTSSGSVEFDDD 171 (472)
Q Consensus 92 ~~~~~~~~~~~~~~ll~~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 171 (472)
+...+....-.++.+++..||+.|-...+.+.-+.+.+..++|++.+..-|.........+..
T Consensus 132 lgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q----------------- 194 (465)
T KOG1387|consen 132 LGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ----------------- 194 (465)
T ss_pred HHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh-----------------
Confidence 333444444466677777899988766555556667777899988776554433221111100
Q ss_pred ceeCCCCCCCCCCCCCCCccCCchhHHHHHHHhccccc-ccceEEEcccccccHHHHHHHhcccccCCCCCeeEecccCC
Q 012061 172 FIEIPGLPPIPLSSVPPAVMDSKSLFATSFLENGNSFV-KSNGVLINSFDALEADTLVALNGRRVVAGLPPVYAVGPLLP 250 (472)
Q Consensus 172 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~s~~~le~~~~~~~~~~~~~p~~p~v~~vGpl~~ 250 (472)
++....+....-..++.+........ +++-+++||...-.+-...+- . ....-|=|.+.
T Consensus 195 ------------rq~s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~--~------~~~~iVyPPC~ 254 (465)
T KOG1387|consen 195 ------------RQKSGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQ--S------NTCSIVYPPCS 254 (465)
T ss_pred ------------hhhcchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhh--c------cceeEEcCCCC
Confidence 00001111111133555555444433 567788888665443321111 1 11222222221
Q ss_pred CCccCCCCCCccchhhhccCCCCCceEEEeecccccC-CHHHHHHHHHHHHhCC-----Cce-EEEEeCCCCCcchhHHH
Q 012061 251 CEFEKRDDPSTSLILKWLDDQPEGSVVYVSFGSRLAL-SMEQTKELGDGLLSSG-----CRF-LWVVKGKNVDKEDEESL 323 (472)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~-----~~~-~~~~~~~~~~~~~~~~~ 323 (472)
. ++ +++-.....++-...++.|-.--. +-+.++-.+--+++.+ .+. +..+|+ +-+..+.+.+
T Consensus 255 ~-------e~---lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGS-cRneeD~erv 323 (465)
T KOG1387|consen 255 T-------ED---LKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGS-CRNEEDEERV 323 (465)
T ss_pred H-------HH---HHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEec-cCChhhHHHH
Confidence 1 11 444333333444666777755211 1112232222233222 122 333443 3333444444
Q ss_pred HhhhhHHHHHHhh-cCCceeccCCChHHHhcccCcCcEEeecCcc-----hHHHHHHhCCcEEecCCcccchhhHHHHHh
Q 012061 324 KNVLGHELMEKIK-DQGLVVKNWVDQDKVLSHRAVGGFVSHGGWN-----SLVEAARHGVPLLVWPHFGDQKINAEAVER 397 (472)
Q Consensus 324 ~~~~p~~~~~~~~-~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~-----s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 397 (472)
+.. +++.+..+ +.++.+..-+|..++...=....+=-|+=|| ++-|.+++|.=+|+-
T Consensus 324 k~L--kd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h--------------- 386 (465)
T KOG1387|consen 324 KSL--KDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVH--------------- 386 (465)
T ss_pred HHH--HHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEe---------------
Confidence 322 23333333 4678888888888554321111122233333 678999998755542
Q ss_pred hCeeeEEee---cCCCC--cCCcCHHHHHHHHHHHhc-CH----HHHHHHHHHHHHHHH
Q 012061 398 AGLGMWVRS---WGWGT--ELRAKGDEIGLKIKDLMA-ND----FLREQAKRIEEEARK 446 (472)
Q Consensus 398 ~G~G~~l~~---~~~~~--~~~~~~~~l~~~i~~~l~-~~----~~~~~a~~l~~~~~~ 446 (472)
.-.|-.+++ |++.. .-..|.++-++++.+++. |. .+|++|++-..++.+
T Consensus 387 ~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 387 NSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred CCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 122322221 21111 123567788888888875 33 366666666666544
No 157
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.03 E-value=7 Score=36.11 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=37.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
+.++.+|.+...|+-|-=.-.=.|.+.|.++||.|-++.-.+.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 3445689999999999999999999999999999999986653
No 158
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=80.50 E-value=45 Score=30.31 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=46.5
Q ss_pred HHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhh-cCCcee----ccCCChHHHhcccCcCcEEeecC-cch
Q 012061 295 LGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIK-DQGLVV----KNWVDQDKVLSHRAVGGFVSHGG-WNS 368 (472)
Q Consensus 295 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~----~~~~pq~~ll~~~~~~~~I~HgG-~~s 368 (472)
+...+++.|.+|+..... ..++.....+. .+.. ..+++. +++=|+-+.|+ +.+++|.-.- .|.
T Consensus 189 l~k~l~~~g~~~lisfSR-----RTp~~~~s~l~----~~l~s~~~i~w~~~d~g~NPY~~~La--~Adyii~TaDSinM 257 (329)
T COG3660 189 LVKILENQGGSFLISFSR-----RTPDTVKSILK----NNLNSSPGIVWNNEDTGYNPYIDMLA--AADYIISTADSINM 257 (329)
T ss_pred HHHHHHhCCceEEEEeec-----CCcHHHHHHHH----hccccCceeEeCCCCCCCCchHHHHh--hcceEEEecchhhh
Confidence 555566778888777655 33333333332 2221 122221 24568889995 4555666555 588
Q ss_pred HHHHHHhCCcEEec
Q 012061 369 LVEAARHGVPLLVW 382 (472)
Q Consensus 369 ~~eal~~GvP~l~~ 382 (472)
..||++.|+|+-++
T Consensus 258 ~sEAasTgkPv~~~ 271 (329)
T COG3660 258 CSEAASTGKPVFIL 271 (329)
T ss_pred hHHHhccCCCeEEE
Confidence 89999999998775
No 159
>PRK12342 hypothetical protein; Provisional
Probab=80.48 E-value=11 Score=34.33 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=54.0
Q ss_pred ChHHH----HHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHHHHHHHHH
Q 012061 23 HLTPF----LRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLLRWEAIRR 98 (472)
Q Consensus 23 Hi~P~----l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (472)
-+||+ +..|-.|.+.|.+||+++-.+.....+. -+.+......+ --+... . ..+.+.+.+..
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~-l~r~alamGaD---~avli~-d--~~~~g~D~~at------- 97 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSK-VRKDVLSRGPH---SLYLVQ-D--AQLEHALPLDT------- 97 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHH-HHHHHHHcCCC---EEEEEe-c--CccCCCCHHHH-------
Confidence 45554 5666777767999999987654311110 00111222221 111111 1 11222332221
Q ss_pred hHhhhhhhcC-CCCcEEEEcCCChh-----hhHHHHHhcCCCeEEEeCc
Q 012061 99 SAHLLAPLLS-PPLSALITDVTLIS-----AVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 99 ~~~~~~~ll~-~~~D~vI~D~~~~~-----~~~~vA~~lgIP~v~~~~~ 141 (472)
...+.+.++ .+||+|++...... -+..+|+.||+|++.+...
T Consensus 98 -a~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 98 -AKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred -HHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 113334445 57999997652222 3789999999999877544
No 160
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=79.70 E-value=12 Score=35.94 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=64.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCCh
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDP 88 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (472)
|||+++-..+.|++.=...+.+.|+++ +.+|++++.+...+.++ .+|.++.+- .++... ....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~---------~~P~vd~vi----~~~~~~--~~~~ 65 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS---------RMPEVNEAI----PMPLGH--GALE 65 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh---------cCCccCEEE----eccccc--chhh
Confidence 689999999999999999999999995 89999999875544443 233332221 111110 0000
Q ss_pred HHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEE
Q 012061 89 FLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYV 137 (472)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~ 137 (472)
+.. ...+...++ .++|++|.=. ...-...++...|+|.-+
T Consensus 66 ~~~--------~~~l~~~lr~~~yD~vidl~-~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 66 IGE--------RRRLGHSLREKRYDRAYVLP-NSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hHH--------HHHHHHHHHhcCCCEEEECC-CcHHHHHHHHHcCCCeEe
Confidence 000 011223344 5899999655 444566777888888654
No 161
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.47 E-value=21 Score=33.82 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=34.9
Q ss_pred CEEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEcCCCCcc
Q 012061 11 PHVALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSL 52 (472)
Q Consensus 11 ~~il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~ 52 (472)
+||++++. ++-|-..-..++|..|++.|..|.++++.+-++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 57777777 8999999999999999999999888877764433
No 162
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=78.77 E-value=4 Score=32.26 Aligned_cols=38 Identities=8% Similarity=-0.074 Sum_probs=25.7
Q ss_pred CEEEEEcCCCcc---ChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMG---HLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~G---Hi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
|+|+|+--|-.+ .-.-.++|+.+.++|||+|.++.+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 577777776544 33567889999999999999997753
No 163
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=76.46 E-value=5.3 Score=32.54 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
++.+|++.+.++-+|-.-..-++..|.++|++|++.....
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v 41 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT 41 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5679999999999999999999999999999999998653
No 164
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=76.02 E-value=74 Score=30.33 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=59.7
Q ss_pred CCce-eccCCChH---HHhcccCcCcEEe--ecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCC
Q 012061 338 QGLV-VKNWVDQD---KVLSHRAVGGFVS--HGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGT 411 (472)
Q Consensus 338 ~~~~-~~~~~pq~---~ll~~~~~~~~I~--HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 411 (472)
+++. .++++|-+ .+|+..+++.|+| .=|.|++.-.+..|+|++.- .+----.-+.+.|+=+.. .
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf------~ 314 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLF------Y 314 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEe------c
Confidence 5665 45788744 8886666655554 35899999999999999875 233333556666887777 6
Q ss_pred cCCcCHHHHHHHHHHHhc
Q 012061 412 ELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 412 ~~~~~~~~l~~~i~~~l~ 429 (472)
.+.++...|+++=+++.+
T Consensus 315 ~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 315 GDELDEALVREAQRQLAN 332 (360)
T ss_pred cccCCHHHHHHHHHHHhh
Confidence 678999999999988874
No 165
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.64 E-value=18 Score=30.22 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTV 50 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~ 50 (472)
..|+|++...|+-|-..-.+.++..|.++|+.|-=+.++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 468999999999999999999999999999998766555443
No 166
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.60 E-value=4.6 Score=31.86 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=32.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
||++.+.++-.|.....-++..|.++|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999887643
No 167
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=74.45 E-value=44 Score=30.50 Aligned_cols=44 Identities=27% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCcc
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSL 52 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~ 52 (472)
+.++|||++.-=-+.- ---+..|+++|.+.| +|+++.|...++-
T Consensus 2 ~~~~M~ILltNDDGi~-a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 2 QDKKPHILVCNDDGIE-GEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCCCEEEEECCCCCC-CHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 4567999987654322 235778999998888 7998888755433
No 168
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=73.99 E-value=5.7 Score=38.61 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCceec-cCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHH----HHhhCeeeEEeecCCCCc
Q 012061 338 QGLVVK-NWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEA----VERAGLGMWVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~----v~~~G~G~~l~~~~~~~~ 412 (472)
.++... +..+..++|.. ++++||=- ...+.|.+..++|+|....=.|.....+- .++...|..+
T Consensus 252 ~~i~~~~~~~~~~~ll~~--aDiLITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~-------- 320 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAA--ADILITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV-------- 320 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT---SEEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE--------
T ss_pred CcEEECCCCCCHHHHHHh--cCEEEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee--------
Confidence 555443 45567788854 66699987 55889999999999987654444422110 1112223233
Q ss_pred CCcCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMAND-FLREQAKRIEEEARKAIGVGGSSERTFKELI 462 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (472)
-+.++|.++|..+++++ .++++-++..+++-. ..+|.++.+.++.++
T Consensus 321 --~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 321 --YNFEELIEAIENIIENPDEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp --SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred --CCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 46799999999998755 455666777777655 477888887777665
No 169
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=73.85 E-value=85 Score=30.01 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=64.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChH
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPF 89 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (472)
||+++-..+.|++.=...+.+.|+++ +.+|++++.+.+.+.++. +|.++.+ +.+ +.... ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---------~p~vd~v-i~~---~~~~~--~~~~ 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE---------NPDINAL-YGL---DRKKA--KAGE 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc---------CCCccEE-EEe---Chhhh--cchH
Confidence 58999999999999999999999995 899999998765444432 3333222 111 11000 0000
Q ss_pred HHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 90 LLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 90 ~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
..+... . .+-.-++ .++|++|.-. .......++...|.|.-+-
T Consensus 66 ~~~~~~----~-~l~~~lr~~~yD~vidl~-~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 66 RKLANQ----F-HLIKVLRANRYDLVVNLT-DQWMVAILVKLLNARVKIG 109 (344)
T ss_pred HHHHHH----H-HHHHHHHhCCCCEEEECC-cchHHHHHHHhcCCCeEEe
Confidence 001111 0 1112234 5899999655 4456677888889996544
No 170
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=73.52 E-value=42 Score=28.13 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=30.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
-|.+++.++.|-....+.+|-+.+.+|++|.|+-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4778888999999999999999999999999963
No 171
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=72.84 E-value=15 Score=33.39 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=23.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|||+++..-+-| ..||+.|.++|+ |.+-+..
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t 31 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVAT 31 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEh
Confidence 688888776655 579999999998 5554443
No 172
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=72.61 E-value=8.3 Score=33.62 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=29.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCcc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSL 52 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~ 52 (472)
|||++.-=-+. +---+..|+++|.+.||+|+++.|...++.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 67777765554 444578899999888999999999866544
No 173
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=72.13 E-value=13 Score=32.21 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=46.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChH
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPF 89 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (472)
.++-+-..+-|-+.-...|+++|.++ |++|.+-++.+....... ...+. .+.....|.|. .
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~-------~~~~~--~v~~~~~P~D~--------~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMAR-------KLLPD--RVDVQYLPLDF--------P 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHH-------GG-GG--G-SEEE---SS--------H
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHH-------HhCCC--CeEEEEeCccC--------H
Confidence 46666678899999999999999997 899888876432211111 11111 11122233321 1
Q ss_pred HHHHHHHHHhHhhhhhhcC-CCCcEEEEcC-CChhhhHHHHHhcCCCeEEEe
Q 012061 90 LLRWEAIRRSAHLLAPLLS-PPLSALITDV-TLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 90 ~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~~ 139 (472)
. ..+..++ ++||++|.-. -+.+-....|++.|||.+.+.
T Consensus 85 ~-----------~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 85 W-----------AVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp H-----------HHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred H-----------HHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 1 2234444 6788888444 234444557788899987663
No 174
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=71.84 E-value=36 Score=31.31 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=31.6
Q ss_pred ceeccCCChHHHhcccCcCcEEeecCcchHHHHHHhCCcEEecC
Q 012061 340 LVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWP 383 (472)
Q Consensus 340 ~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 383 (472)
+.+.+-++-.+++.+ ++++||-.+ ++-.||+.+|+|++++.
T Consensus 185 ~~~~~~~~~~~Ll~~--s~~VvtinS-tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQ--SDAVVTINS-TVGLEALLHGKPVIVFG 225 (269)
T ss_pred EEECCCCCHHHHHHh--CCEEEEECC-HHHHHHHHcCCceEEec
Confidence 344567788889966 556888755 47899999999999974
No 175
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=71.84 E-value=3.2 Score=41.30 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=41.6
Q ss_pred hHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHH
Q 012061 368 SLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMANDFLREQAKRI 440 (472)
Q Consensus 368 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l 440 (472)
++.||+++|+|++..=-. -=+..++..--|... +++.-....+++++.++..|++++.++.+=
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV~~~~tG~l~------dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~ 443 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIVVHGVTGLLI------DPGQEAVAELADALLKLRRDPELWARMGKN 443 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEEEcCCcceee------CCchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 689999999999997322 112223333456666 443222337999999999999987665443
No 176
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=71.75 E-value=5.9 Score=31.87 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=30.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
|||++.-.++.+=+. ...+.+.|.++|++|.++.++.-
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcH
Confidence 588888888866666 99999999999999999988743
No 177
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=71.59 E-value=27 Score=31.93 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=27.4
Q ss_pred hhhhcC-CCCcEEEEcCC-----ChhhhHHHHHhcCCCeEEEeCc
Q 012061 103 LAPLLS-PPLSALITDVT-----LISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 103 ~~~ll~-~~~D~vI~D~~-----~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
+...++ .+||+|++... ...-+..+|+.||+|++.+...
T Consensus 104 La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 334445 57999997552 2236778999999999877554
No 178
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.01 E-value=8.4 Score=35.41 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=36.8
Q ss_pred CcCcEEeecCcchHHHHHH------hCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 356 AVGGFVSHGGWNSLVEAAR------HGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
.++++|+-||-||++.+++ .++|++.+-.. .+|- ....+++++.++++++++
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G-------------~lGF---------L~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG-------------HLGF---------YTDWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC-------------Ccee---------cccCCHHHHHHHHHHHHc
Confidence 4677999999999999986 47888887421 1111 123456777777777775
Q ss_pred C
Q 012061 430 N 430 (472)
Q Consensus 430 ~ 430 (472)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 4
No 179
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=70.08 E-value=32 Score=30.85 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=24.1
Q ss_pred CcEEE-EcCCChhhhHHHHHhcCCCeEEEeCc
Q 012061 111 LSALI-TDVTLISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 111 ~D~vI-~D~~~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
||+++ .|+..---++.=|+++|||+|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 88876 67755556777889999999988655
No 180
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=70.05 E-value=89 Score=29.58 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=35.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPT 49 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~ 49 (472)
|||+++-..+.|++.=...+.+.|+++ +.+||+++.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~ 41 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGF 41 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHH
Confidence 689999999999999999999999996 999999997654
No 181
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=69.76 E-value=44 Score=33.34 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=52.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHH
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFL 90 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (472)
.+++++.-+ .-.+.+++.|.+-|-+|..+.+....+..+..-. .+....+......... ..+
T Consensus 304 krv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~v~~---------~~d--- 365 (435)
T cd01974 304 KKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQ-ALLDASPYGAGAKVYP---------GKD--- 365 (435)
T ss_pred CEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHH-HHHhhcCCCCCcEEEE---------CCC---
Confidence 367766533 3488889999999999977765432222211110 1110000000000000 011
Q ss_pred HHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 91 LRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 91 ~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
...+.+.++ .+||++|... ....+|+++|||++.+
T Consensus 366 ---------~~e~~~~i~~~~pDliiG~s----~~~~~a~~~gip~v~~ 401 (435)
T cd01974 366 ---------LWHLRSLLFTEPVDLLIGNT----YGKYIARDTDIPLVRF 401 (435)
T ss_pred ---------HHHHHHHHhhcCCCEEEECc----cHHHHHHHhCCCEEEe
Confidence 112334445 6899999887 4678999999998754
No 182
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=69.42 E-value=30 Score=31.33 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=26.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLA 53 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~ 53 (472)
|||++.-=-+ =|--=+..|+++|. .+++|+++.|...++-.
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 4455443322 13334677888888 99999999988765444
No 183
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=69.06 E-value=19 Score=26.71 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCCccchhhhh
Q 012061 27 FLRLAASLVQHHCRVTLITTYPTVSLAETQHV 58 (472)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 58 (472)
++.+++.|.+.|+++. +++...+.+++.|+
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~Gi 31 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREAGL 31 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHCCC
Confidence 4689999999999883 44445555555553
No 184
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=68.82 E-value=51 Score=29.65 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=51.1
Q ss_pred CCCceEEEeeccc---ccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcch-hHHHHhhhhHHHHHHhhcCCceeccCCC
Q 012061 272 PEGSVVYVSFGSR---LALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKED-EESLKNVLGHELMEKIKDQGLVVKNWVD 347 (472)
Q Consensus 272 ~~~~~v~vs~GS~---~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~p 347 (472)
.+++.|.+..|+. -..+.+.+.++++.|.+.+.++++..+. .+ ..+....+. +......+.+.+-.+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 173 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGP-----EEQEKEIADQIA----AGLQNPVINLAGKTS 173 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SS-----HHHHHHHHHHHH----TTHTTTTEEETTTS-
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccc-----hHHHHHHHHHHH----HhcccceEeecCCCC
Confidence 3445777777775 3457888999999998877665444433 11 011111111 111111233333333
Q ss_pred --h-HHHhcccCcCcEEeecCcchHHHHHHhCCcEEec
Q 012061 348 --Q-DKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVW 382 (472)
Q Consensus 348 --q-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 382 (472)
+ ..++++ ++++|+. -.|.+.=|.+.|+|+|++
T Consensus 174 l~e~~ali~~--a~~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 174 LRELAALISR--ADLVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHT--SSEEEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHhc--CCEEEec-CChHHHHHHHHhCCEEEE
Confidence 2 266744 6668887 467788899999999998
No 185
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=68.50 E-value=38 Score=33.60 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=51.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHH
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLL 91 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (472)
|++++..+.. .+.+++.|.+-|-+|+.+.+................. . .. .......+..
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~~--~----------~~---~v~~~~~~~~ 341 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWLSA--L----------GV---EVRYRKSLED 341 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHHHh--c----------CC---ccccCCCHHH
Confidence 5666655553 6669999999999999998863222111111101000 0 00 0000011111
Q ss_pred HHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 92 RWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 92 ~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
..+.++ .+||++|... .+..+|+++|||.+.+
T Consensus 342 -----------~~~~~~~~~pDl~Ig~s----~~~~~a~~~giP~~r~ 374 (416)
T cd01980 342 -----------DIAAVEEYRPDLAIGTT----PLVQYAKEKGIPALYY 374 (416)
T ss_pred -----------HHHHHhhcCCCEEEeCC----hhhHHHHHhCCCEEEe
Confidence 123334 6999999876 4677999999998754
No 186
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.20 E-value=84 Score=27.60 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=70.2
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhc
Q 012061 274 GSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLS 353 (472)
Q Consensus 274 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~ 353 (472)
++++.|+.|.++ ..-+..|.+.|..+.++... ..+++. +-....++.+..--.+...+
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~------~~~~l~--------~l~~~~~i~~~~~~~~~~dl- 67 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEE------LESELT--------LLAEQGGITWLARCFDADIL- 67 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCC------CCHHHH--------HHHHcCCEEEEeCCCCHHHh-
Confidence 458888877664 23345555677776554432 111111 11112344432211123335
Q ss_pred ccCcCcEEeecCcchH-----HHHHHhCCcEEec--CCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHH
Q 012061 354 HRAVGGFVSHGGWNSL-----VEAARHGVPLLVW--PHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKD 426 (472)
Q Consensus 354 ~~~~~~~I~HgG~~s~-----~eal~~GvP~l~~--P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~ 426 (472)
..+.++|..-|...+ .+|-..|+|+-++ |-..| +.+...+.+-++-+.+...|. .-.-+..|++.|.+
T Consensus 68 -~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G~---sP~la~~lr~~ie~ 142 (205)
T TIGR01470 68 -EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGGA---APVLARLLRERIET 142 (205)
T ss_pred -CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCCC---CcHHHHHHHHHHHH
Confidence 345668888887633 3344568888443 22222 222222333334444422111 11234678888888
Q ss_pred HhcC--HHHHHHHHHHHHHHHHH
Q 012061 427 LMAN--DFLREQAKRIEEEARKA 447 (472)
Q Consensus 427 ~l~~--~~~~~~a~~l~~~~~~~ 447 (472)
++.+ ..+.+.+.++++.+++.
T Consensus 143 ~l~~~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 143 LLPPSLGDLATLAATWRDAVKKR 165 (205)
T ss_pred hcchhHHHHHHHHHHHHHHHHhh
Confidence 8742 24555555566655543
No 187
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=67.29 E-value=17 Score=26.33 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=30.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
--++++..+...|...+-.+|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3688888888999999999999999999998866
No 188
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=66.89 E-value=34 Score=33.97 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=26.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|+.++..+.. .+.+++.|.+-|-+|+.+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 7788887775 899999999999999998766
No 189
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=66.69 E-value=71 Score=27.67 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=32.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
-.|.++...+.|-....+.+|-+.+.+|++|.++-.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 469999999999999999999999999999999843
No 190
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=66.65 E-value=11 Score=29.60 Aligned_cols=37 Identities=27% Similarity=0.206 Sum_probs=33.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.|+++...+..-|-.-+..|+..|.++||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 3789999999999999999999999999999988544
No 191
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=66.32 E-value=45 Score=30.30 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
.++|+++..-+-| ..||+.|.++|+.|++.+...+
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~ 36 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRT 36 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCC
Confidence 3578888776655 5799999999998887665544
No 192
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=65.65 E-value=67 Score=28.14 Aligned_cols=160 Identities=12% Similarity=0.041 Sum_probs=75.0
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHh
Q 012061 273 EGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVL 352 (472)
Q Consensus 273 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll 352 (472)
+++++.|+.|.++ ...+..|.+.+..+.++... .. ..+.+..+...+..........-+
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~------~~--------~~l~~l~~~~~i~~~~~~~~~~~l 68 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE------LT--------ENLVKLVEEGKIRWKQKEFEPSDI 68 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC------CC--------HHHHHHHhCCCEEEEecCCChhhc
Confidence 3458888887764 34455555667665544322 11 111111111334333333333445
Q ss_pred cccCcCcEEeecCcchHHHHHH----hCCcEEecCCcccchhhH-----HHHHhhCeeeEEeecCCCCcCCcCHHHHHHH
Q 012061 353 SHRAVGGFVSHGGWNSLVEAAR----HGVPLLVWPHFGDQKINA-----EAVERAGLGMWVRSWGWGTELRAKGDEIGLK 423 (472)
Q Consensus 353 ~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na-----~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~ 423 (472)
..++++|.--+.-.+.+.++ .++++-+ .|.+..+ ..+.+-++-+.+...|. .-.-+..|++.
T Consensus 69 --~~adlViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~---sP~la~~lr~~ 139 (202)
T PRK06718 69 --VDAFLVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRGKLTISVSTDGA---SPKLAKKIRDE 139 (202)
T ss_pred --CCceEEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcCCeEEEEECCCC---ChHHHHHHHHH
Confidence 34556888777665555543 4555433 3443332 22333344444421111 11224567777
Q ss_pred HHHHhcC--HHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 012061 424 IKDLMAN--DFLREQAKRIEEEARKAIGVGGSSERTFKELI 462 (472)
Q Consensus 424 i~~~l~~--~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (472)
|..++.. ..+-+.+.++++.+++.+.+.....+.++.++
T Consensus 140 ie~~~~~~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~ 180 (202)
T PRK06718 140 LEALYDESYESYIDFLYECRQKIKELQIEKREKQILLQEVL 180 (202)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7777631 23555666666666554322333333444443
No 193
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=64.35 E-value=23 Score=35.28 Aligned_cols=35 Identities=23% Similarity=0.109 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+.|+|+++..+++-| +|++.|.+.++...+++.+.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pg 37 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPG 37 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECC
Confidence 469999999999877 78999999986655555554
No 194
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=64.29 E-value=22 Score=30.53 Aligned_cols=107 Identities=8% Similarity=-0.042 Sum_probs=51.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCe--EEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCCh
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCR--VTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDP 88 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (472)
|||+|+..++. ..+..+.+.|.+++|. +..+.+..........- ..... ........ . ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~----~~~~~-----~~~~~~~~--~---~~- 62 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRA----IKNGI-----PAQVADEK--N---FQ- 62 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHH----HHTTH-----HEEEHHGG--G---SS-
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccc----ccCCC-----CEEecccc--C---CC-
Confidence 68888865553 5677788899999997 44444433222211100 00000 01100000 0 00
Q ss_pred HHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCc
Q 012061 89 FLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
.-....+.+.+.++ .+||++|+-.+.......+-+.....++-++++
T Consensus 63 ------~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 63 ------PRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ------SHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ------chHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 00111234456666 899999987733334445666666666666554
No 195
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.33 E-value=5.9 Score=34.16 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=26.1
Q ss_pred EEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPSAGMGHLTPF------------LRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~------------l~La~~L~~rGh~Vt~~~~~ 47 (472)
+|++...|++=.+.|. ..||+++..+|++||++..+
T Consensus 5 ~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 5 KVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred EEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 6666666666666553 68999999999999999887
No 196
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=61.99 E-value=37 Score=32.32 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=62.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChH
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPF 89 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (472)
||+++-..+.|++.=...+.+.|++. +.+|++++.+...+.++ ..|.++.+ +. .+... ....+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~---------~~p~id~v-~~---~~~~~--~~~~~ 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLE---------RMPEIRQA-ID---MPLGH--GALEL 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHh---------cCchhcee-ee---cCCcc--cchhh
Confidence 58999999999999999999999995 89999999765433333 33333222 11 11000 00000
Q ss_pred HHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEE
Q 012061 90 LLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYV 137 (472)
Q Consensus 90 ~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~ 137 (472)
. .. ..+..-++ .++|++|.-. .......++...|+|.-+
T Consensus 66 ~---~~-----~~~~~~lr~~~yD~vi~l~-~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 T---ER-----RRLGRSLREERYDQAIVLP-NSLKSALIPFFAGIPHRT 105 (334)
T ss_pred h---HH-----HHHHHHHhhcCCCEEEECC-CCHHHHHHHHHcCCCcee
Confidence 0 00 12223344 5899999766 444566677778888543
No 197
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=61.95 E-value=10 Score=34.02 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPF------------LRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~------------l~La~~L~~rGh~Vt~~~~~ 47 (472)
|||++...|+.=.+.|. .+||+.|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 46666666665555543 57889999999999998643
No 198
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=61.64 E-value=17 Score=34.03 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=36.8
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
.++++|+-||-||+++++.. ++|++.+-.. .+|.. ...+++++.++|.+++++
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G-------------~lGFL---------~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHG-------------RLGFI---------TDIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC-------------Ccccc---------ccCCHHHHHHHHHHHHcC
Confidence 46779999999999999874 6787776310 11211 235678888888888754
No 199
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.64 E-value=15 Score=34.46 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=38.9
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+=||-||++.+.+. ++|++.+-.. .+|- ....+++++.++|+++++++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G-------------~lGF---------Lt~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG-------------HLGF---------LTEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC-------------CCcc---------cccCCHHHHHHHHHHHHcCC
Confidence 57889999999999999774 7888887321 1221 22356788888888888643
No 200
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=61.17 E-value=1.9e+02 Score=29.31 Aligned_cols=108 Identities=10% Similarity=-0.013 Sum_probs=69.6
Q ss_pred ceeccCCChHHHhcc-cCcCcEEe---ecCcchH-HHHHHhCC----cEEecCCcccchhhHHHHHhhCeeeEEeecCCC
Q 012061 340 LVVKNWVDQDKVLSH-RAVGGFVS---HGGWNSL-VEAARHGV----PLLVWPHFGDQKINAEAVERAGLGMWVRSWGWG 410 (472)
Q Consensus 340 ~~~~~~~pq~~ll~~-~~~~~~I~---HgG~~s~-~eal~~Gv----P~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~ 410 (472)
+.+.+.+|+.++.++ ...++++. .-|.|-+ .|.++++. |+|.--+.+ | .+++.-++.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~~l~~AllV------ 430 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AVELKGALLT------ 430 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hhhcCCCEEE------
Confidence 356678887754432 33333544 4488854 59999987 444432221 1 1444456777
Q ss_pred CcCCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 411 TELRAKGDEIGLKIKDLMAND--FLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 411 ~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
++ .+.++++++|.+.|+.+ +-++|.+++.+.+++- ++..=.+.|++++..
T Consensus 431 NP--~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 431 NP--YDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSP 482 (487)
T ss_pred CC--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhh
Confidence 33 47899999999999854 4566777777766653 777778888888764
No 201
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=61.03 E-value=1e+02 Score=25.96 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.1
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
...++++|+|-| .+.+|...++|||++.
T Consensus 63 ~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 355688888865 7889999999999995
No 202
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.96 E-value=17 Score=33.89 Aligned_cols=53 Identities=19% Similarity=0.117 Sum_probs=36.7
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
.++++|+-||-||++.+++. ++|++.+-.. .+|- ....+++++.+++++++++
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G-------------~lGF---------Lt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAG-------------HLGF---------LTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC-------------Cccc---------CCcCCHHHHHHHHHHHHcC
Confidence 46789999999999988663 6788777321 0121 2235678888888888764
No 203
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=60.40 E-value=26 Score=29.64 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=15.6
Q ss_pred hhhhhhcC-CCCcEEEEcC
Q 012061 101 HLLAPLLS-PPLSALITDV 118 (472)
Q Consensus 101 ~~~~~ll~-~~~D~vI~D~ 118 (472)
..+.++|+ .+||+||+..
T Consensus 79 ~~l~~~l~~~~PD~IIsTh 97 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTH 97 (169)
T ss_pred HHHHHHHhhcCCCEEEECC
Confidence 46778888 8999999998
No 204
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=57.78 E-value=40 Score=25.68 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHH 38 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rG 38 (472)
|+|+++..+++-| +||+.|.+.-
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~ 23 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSP 23 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCT
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCC
Confidence 7999999999888 6899998854
No 205
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=57.67 E-value=13 Score=35.09 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=34.0
Q ss_pred CEEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEcCCCCcc
Q 012061 11 PHVALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSL 52 (472)
Q Consensus 11 ~~il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~ 52 (472)
||++|+.. |+-|-..-..++|..++++|++|.++++.+.++.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 56666666 8999999999999999999999999998865543
No 206
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=57.63 E-value=1.5e+02 Score=26.90 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=42.4
Q ss_pred CeeeEEeecCCCCcCCcCHHHHHHHHHHHhc------C-HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 399 GLGMWVRSWGWGTELRAKGDEIGLKIKDLMA------N-DFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 399 G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~------~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
..|+++ ....++.++-.+.|+..+. + +..+++|.+++.. .||.|-+.+.+|++++..
T Consensus 184 RFGL~l------~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~------rg~RSGRtA~QF~~~l~g 247 (249)
T PF05673_consen 184 RFGLWL------SFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR------RGGRSGRTARQFIDDLAG 247 (249)
T ss_pred hCCcEE------EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhc
Confidence 467777 6667888888888887773 2 4667777776644 678889999999998763
No 207
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.26 E-value=20 Score=33.55 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=39.0
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+=||-||++.+++. ++|++.+-... +|- ....+++++.+++++++++.
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGF---------Lt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVGNSNIPILGINTGR-------------LGF---------LATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEecCC-------------CCc---------ccccCHHHHHHHHHHHHcCC
Confidence 46789999999999999873 77888774211 221 23456788888998888643
No 208
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=55.96 E-value=17 Score=34.34 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
..+|+|+++..++.| ..+|..|++.||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 346899999999887 457888999999999997653
No 209
>PRK06849 hypothetical protein; Provisional
Probab=55.41 E-value=25 Score=34.46 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+++|+|+++.... .-.+.+++.|.++||+|+++....
T Consensus 2 ~~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4568888886443 358999999999999999997653
No 210
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.19 E-value=8.8 Score=32.10 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=26.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+|.++..+..|+ ++|..|+.+||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 467777777765 89999999999999997753
No 211
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=54.77 E-value=1.4e+02 Score=25.74 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=25.3
Q ss_pred EEEEEcC---CC-ccChHH-HHHHHHHHHhCCCeEEEEEcCCCC
Q 012061 12 HVALIPS---AG-MGHLTP-FLRLAASLVQHHCRVTLITTYPTV 50 (472)
Q Consensus 12 ~il~~~~---~~-~GHi~P-~l~La~~L~~rGh~Vt~~~~~~~~ 50 (472)
||.++.. |+ +|=+-- .-.|+..|+++||+||+++.....
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 4555543 22 344433 346888888899999999876543
No 212
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.80 E-value=23 Score=33.13 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=38.0
Q ss_pred CcCcEEeecCcchHHHHHH----hCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAAR----HGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+=||-||++.++. +++|++.+-... +|.. ..++++++.+++++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl---------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFL---------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCcc---------cccCHHHHHHHHHHHHcCC
Confidence 4678999999999999985 367877763211 1222 2346788999999988643
No 213
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.25 E-value=23 Score=33.12 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=39.0
Q ss_pred CcCcEEeecCcchHHHHHH----hCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAAR----HGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+=||-||++.+.+ .++|++.+-.. .+|... ..+++++.++|++++++.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-------------~lGFL~---------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG-------------HLGFLT---------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC-------------CCeEee---------ccCHHHHHHHHHHHHcCC
Confidence 4678999999999999975 37888887421 133333 356788888998888643
No 214
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.17 E-value=12 Score=34.16 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=35.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
.-++++.-|+.|=.+=..+||.+|.++|+.|+|++.+....
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 36899999999999999999999999999999998875433
No 215
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=52.27 E-value=26 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.++.||++.+.+.-||=.-..-+++.|+..|.+|......
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 4678999999999999999999999999999999877543
No 216
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.02 E-value=1.1e+02 Score=29.13 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLA 53 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~ 53 (472)
++--|+|+..-+.|-..-.-.||..|.+.|++|.++....++.-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 345688888889999999999999999999999999988776433
No 217
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.93 E-value=26 Score=32.99 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=39.5
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+=||-||++.+.+. ++|++.+... .+|... ...++++.+++++++++.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G-------------~lGFL~---------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNLG-------------HVGFLA---------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC-------------CCceec---------cCCHHHHHHHHHHHHcCC
Confidence 46789999999999999764 7888888531 123222 356788888998888643
No 218
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=51.82 E-value=67 Score=32.02 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.++|+++..+-.| +++++.|.++|+.|++.=..
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCC
Confidence 5789999999988 99999999999999988543
No 219
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=51.74 E-value=24 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=29.3
Q ss_pred CEEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTP-FLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P-~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+||++--.++ +..+- ...|++.|.++||+|.++.++.
T Consensus 6 k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 6 KRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4677766666 44555 7999999999999999998774
No 220
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.68 E-value=27 Score=32.19 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=37.5
Q ss_pred CcCcEEeecCcchHHHHHHh-CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAARH-GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~-GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+=||-||++.++.. ..|++.+-.. .+|- ....+++++.++|++++++.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGF---------L~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGF---------LTEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCcc---------CcccCHHHHHHHHHHHHcCC
Confidence 46779999999999999884 5576665220 1121 22457789999999998743
No 221
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=51.27 E-value=1.6e+02 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
|||++.-=-+. |---+..|+++|.+ +|+|+++.|...++
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 56666643222 11227888999965 68999998876544
No 222
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=51.21 E-value=1.2e+02 Score=29.21 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHC-RVTLIT 45 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh-~Vt~~~ 45 (472)
.+|+++..++.| ..+|+.|+..|+ +++++=
T Consensus 25 ~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD 55 (339)
T PRK07688 25 KHVLIIGAGALG-----TANAEMLVRAGVGKVTIVD 55 (339)
T ss_pred CcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEe
Confidence 579999999877 567899999998 888883
No 223
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=50.38 E-value=61 Score=24.98 Aligned_cols=84 Identities=8% Similarity=0.108 Sum_probs=49.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHHHHHHHHHHhHh
Q 012061 22 GHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFLLRWEAIRRSAH 101 (472)
Q Consensus 22 GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (472)
++=.-++.+++.|.+.|+++. +++.....++..|+ .........+ ..+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~gi-------------~~~~v~~~~~-----------------~~~ 57 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEAGI-------------PVEVVNKVSE-----------------GRP 57 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHcCC-------------eEEEEeecCC-----------------Cch
Confidence 355678899999999999873 44445455555443 1111100000 112
Q ss_pred hhhhhcC-CCCcEEEEcCC------ChhhhHHHHHhcCCCeEE
Q 012061 102 LLAPLLS-PPLSALITDVT------LISAVLPVTINLHLPNYV 137 (472)
Q Consensus 102 ~~~~ll~-~~~D~vI~D~~------~~~~~~~vA~~lgIP~v~ 137 (472)
.+.++++ -++|+||.-+. ..+.....|-..|||+++
T Consensus 58 ~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 58 NIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 2334444 57899987431 134667788999999873
No 224
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=50.34 E-value=22 Score=31.11 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=31.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|-|++..+|+-|-......||++|.+++|.|...+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 346777789999999999999999999999887643
No 225
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=50.33 E-value=33 Score=29.44 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|+|.++.- .|++- -.|+++...|||+||-++-.
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 56666543 34432 46889999999999988654
No 226
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=50.24 E-value=1.1e+02 Score=27.81 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
.|+|+++...+ =...|++.|...++.+++.+...
T Consensus 2 ~~~ilvlGGT~-----Dar~la~~L~~~~~~~~~ss~t~ 35 (257)
T COG2099 2 MMRILLLGGTS-----DARALAKKLAAAPVDIILSSLTG 35 (257)
T ss_pred CceEEEEeccH-----HHHHHHHHhhccCccEEEEEccc
Confidence 45677765443 35889999999998777776553
No 227
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=50.17 E-value=23 Score=30.40 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=24.7
Q ss_pred hhhhhcCCCCcEEEEcCCChhh-hHHHHHhcCCCeEEEe
Q 012061 102 LLAPLLSPPLSALITDVTLISA-VLPVTINLHLPNYVLF 139 (472)
Q Consensus 102 ~~~~ll~~~~D~vI~D~~~~~~-~~~vA~~lgIP~v~~~ 139 (472)
.++.++.++||+||....+... ....-+..|||++.+.
T Consensus 61 n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 61 NVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 4555555899999986622222 3445577899987663
No 228
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.92 E-value=33 Score=31.51 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=37.0
Q ss_pred CcCcEEeecCcchHHHHHHh-----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 356 AVGGFVSHGGWNSLVEAARH-----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
.++++|+=||-||++.+++. .+|.+.+-..+ .+|- ....+++++.+++.+++++
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGF---------L~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGF---------YCDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeE---------cccCCHHHHHHHHHHHHcC
Confidence 35779999999999999874 56766653300 1221 2235678888888888764
Q ss_pred H
Q 012061 431 D 431 (472)
Q Consensus 431 ~ 431 (472)
+
T Consensus 98 ~ 98 (264)
T PRK03501 98 E 98 (264)
T ss_pred C
Confidence 3
No 229
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.91 E-value=33 Score=31.40 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=37.5
Q ss_pred cCcCcEEeecCcchHHHHHH-hCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 355 RAVGGFVSHGGWNSLVEAAR-HGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 355 ~~~~~~I~HgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
..++++|+=||-||++.+++ +++|++.+-... +|.. ...+++++.+++.+++++
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGfl---------~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGFL---------SSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Cccc---------cccCHHHHHHHHHHHHcC
Confidence 34677999999999999987 577777663110 2222 235678888888888764
No 230
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=49.91 E-value=35 Score=28.54 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.4
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhCCC
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSSGC 304 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 304 (472)
.+|+|+||........++..+.+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999877667778889999988764
No 231
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=49.82 E-value=29 Score=35.20 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLA 53 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~ 53 (472)
-+++..-|+.|--.-.++++...+++|..|.+++.+...+.+
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i 306 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQL 306 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHH
Confidence 477777899999999999999999999999999988654433
No 232
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=49.60 E-value=27 Score=28.01 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 1 MSDSGGFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|-.+.....+|+|.|+..+--| ..|++.|.+.||+|+-+...
T Consensus 1 ~~~~~~~~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 1 MNTPATQAARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSR 42 (127)
T ss_dssp -----------EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSC
T ss_pred CCccccCCCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 4445567778999999988666 47999999999999877543
No 233
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.55 E-value=2e+02 Score=26.06 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=43.4
Q ss_pred CeeeEEeecCCCCcCCcCHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhc
Q 012061 399 GLGMWVRSWGWGTELRAKGDEIGLKIKDLMA-------NDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCN 468 (472)
Q Consensus 399 G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~-------~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (472)
..|+++ ....++.++-...|+-... ++....+|.+|+.. .||.|-+.+.+|++++...
T Consensus 216 RFGLwL------~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~------rg~RSGR~A~QF~~~~~g~ 280 (287)
T COG2607 216 RFGLWL------SFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT------RGGRSGRVAWQFIRDLAGR 280 (287)
T ss_pred hcceee------cccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh------cCCCccHhHHHHHHHHHhh
Confidence 578899 7788899998888887763 34567777777654 4667777788888887643
No 234
>PLN02939 transferase, transferring glycosyl groups
Probab=49.27 E-value=35 Score=37.28 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCC-----CccCh-HHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 8 DSHPHVALIPSA-----GMGHL-TPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 8 ~~~~~il~~~~~-----~~GHi-~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
.+.|||++++.- -.|-+ .-.-.|.++|+++||+|.+++|.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 457999998642 12222 3356899999999999999998653
No 235
>PRK09620 hypothetical protein; Provisional
Probab=48.93 E-value=22 Score=31.90 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=27.5
Q ss_pred CEEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPF------------LRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~------------l~La~~L~~rGh~Vt~~~~~ 47 (472)
++|++...|+.=.+.|. ..||++|.++|++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36777766655554443 57899999999999999754
No 236
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=48.86 E-value=22 Score=33.34 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|.++..++.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 689999888877 5678889999999999975
No 237
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=48.74 E-value=38 Score=29.57 Aligned_cols=40 Identities=13% Similarity=-0.150 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
++.+|++.+.++-.|-....-++..|..+|++|+++....
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v 122 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV 122 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 4468999999999999999999999999999999997654
No 238
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=48.35 E-value=1.6e+02 Score=26.95 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=33.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
-+++..-|+.|=..-.++++...+++|..|.|++.+..
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 46777778999999999999999899999999998743
No 239
>PRK11914 diacylglycerol kinase; Reviewed
Probab=47.75 E-value=1.2e+02 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.2
Q ss_pred cCcEEeecCcchHHHHH----HhCCcEEecCCc
Q 012061 357 VGGFVSHGGWNSLVEAA----RHGVPLLVWPHF 385 (472)
Q Consensus 357 ~~~~I~HgG~~s~~eal----~~GvP~l~~P~~ 385 (472)
.+.+|--||-||+.|++ ..++|+-++|..
T Consensus 65 ~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 65 TDALVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred CCEEEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 46799999999999987 347899999964
No 240
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=47.69 E-value=42 Score=29.39 Aligned_cols=39 Identities=15% Similarity=-0.055 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
++.+|++.+.++-.|-....-++..|..+|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 356899999999999999999999999999999888644
No 241
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=47.02 E-value=15 Score=34.52 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=26.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|+++..++.| ..+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 689999888876 4678899999999999975
No 242
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=46.58 E-value=3.6e+02 Score=28.11 Aligned_cols=88 Identities=9% Similarity=0.121 Sum_probs=49.5
Q ss_pred cCcEEeecCcchHHHHHH---hCCcEEecCCccc--chhhH-HHHHhh--CeeeE-EeecCCCCcCCcCHHHHHHHHHHH
Q 012061 357 VGGFVSHGGWNSLVEAAR---HGVPLLVWPHFGD--QKINA-EAVERA--GLGMW-VRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 357 ~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~D--Q~~na-~~v~~~--G~G~~-l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
++.||.=.|.-.-+-.+. .-+|+|.+|.... --..| .-+.+. |+.+. +. -.+..++.-++..| --
T Consensus 466 ~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~-----i~~~~~aa~~a~~i-~~ 539 (577)
T PLN02948 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVA-----IGNATNAGLLAVRM-LG 539 (577)
T ss_pred CCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEe-----cCChHHHHHHHHHH-Hh
Confidence 456888777643333333 3579999998532 12222 235666 64332 21 12233444444333 12
Q ss_pred hcCHHHHHHHHHHHHHHHHHhcc
Q 012061 428 MANDFLREQAKRIEEEARKAIGV 450 (472)
Q Consensus 428 l~~~~~~~~a~~l~~~~~~~~~~ 450 (472)
+.|++++++.+..++.+++.+.+
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 540 ASDPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHh
Confidence 25889999999999988876444
No 243
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.54 E-value=32 Score=27.28 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=33.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
||++.+.++-.|-.-..-++..|+..|++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999999765
No 244
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.41 E-value=39 Score=31.63 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=38.7
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+=||-||+++++.. ++|++.+... .+|. ....+++++.++|+++++++
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGF---------l~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGF---------LTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------cccc---------cccCCHHHHHHHHHHHHcCC
Confidence 36779999999999999763 6788877531 1221 23457789999999988643
No 245
>PLN02470 acetolactate synthase
Probab=46.16 E-value=51 Score=34.42 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=51.0
Q ss_pred eecccccCC--HHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCC-h-------H
Q 012061 280 SFGSRLALS--MEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVD-Q-------D 349 (472)
Q Consensus 280 s~GS~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p-q-------~ 349 (472)
+|||....+ ...-..+++.|++.|++.++-+.+. ....+- +.+. +.+++.+..--. + .
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~-----~~~~l~----dal~---~~~~i~~i~~rhE~~A~~~Adg 69 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGG-----ASMEIH----QALT---RSNCIRNVLCRHEQGEVFAAEG 69 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCc-----ccHHHH----HHHh---ccCCceEEEeccHHHHHHHHHH
Confidence 466664333 2224668888888888887777551 111111 1111 112333221110 1 1
Q ss_pred HHhcccCcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 350 KVLSHRAVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 350 ~ll~~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
--......+++++|.|-| .+.+|...++|||++.
T Consensus 70 yar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 70 YAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 111224566799999865 7899999999999984
No 246
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=46.11 E-value=2.2e+02 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=25.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
||||+.-=-+. |---+.+|+++|++ +|+|+++.|...++
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 56666544332 22336788888865 68999998876543
No 247
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=46.02 E-value=1.7e+02 Score=29.11 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=25.5
Q ss_pred hhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 102 LLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 102 ~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
.+.++++ .+||++|.+. ....+|+++|||++..
T Consensus 363 e~~~~l~~~~~dliiG~s----~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKELKIDVLIGNS----YGRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhcCCCEEEECc----hhHHHHHHcCCCEEEe
Confidence 3445556 6899999998 3568999999998754
No 248
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=45.46 E-value=82 Score=31.35 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=24.7
Q ss_pred hhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 103 LAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 103 ~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
+.++++ .+||+||.+. ....+|+++|+|++.+
T Consensus 363 l~~~i~~~~pdliig~~----~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 363 LESLAKEEPVDLLIGNS----HGRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHhhccCCCEEEECc----hhHHHHHhcCCCEEEe
Confidence 344555 6899999998 3568899999998754
No 249
>PRK06270 homoserine dehydrogenase; Provisional
Probab=45.17 E-value=1.7e+02 Score=28.07 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=38.1
Q ss_pred ChHHHhcccCcCcEEe------ecC---cchHHHHHHhCCcEEe---cCCcccchhhHHHHHhhCeeeEE
Q 012061 347 DQDKVLSHRAVGGFVS------HGG---WNSLVEAARHGVPLLV---WPHFGDQKINAEAVERAGLGMWV 404 (472)
Q Consensus 347 pq~~ll~~~~~~~~I~------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~G~G~~l 404 (472)
+..++|..+.++.+|- |+| ..-+.+++.+|+++|+ -|....-..-.+..++.|+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 5667787777777776 443 4456899999999999 47654333333344455776654
No 250
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.08 E-value=29 Score=32.06 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=36.1
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
.++++|+=||-||++.+.+. ++|++.+-.. .+|-.. ..+++++.+.+.++++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G-------------~lGFL~---------~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG-------------NLGFLT---------DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------CCcccc---------cCCHHHHHHHHHHHHh
Confidence 46779999999999988653 6788877321 133222 3467788888887776
No 251
>PRK06321 replicative DNA helicase; Provisional
Probab=44.99 E-value=1.5e+02 Score=30.03 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=31.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEEcCCC
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQ-HHCRVTLITTYPT 49 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~-rGh~Vt~~~~~~~ 49 (472)
|++...|+.|=..-.+.+|...+. .|..|.|++-+-.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 677778999999999999999874 6999999987743
No 252
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=44.84 E-value=1.1e+02 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=23.5
Q ss_pred CCcEEEE-cCCChhhhHHHHHhcCCCeEEEeCc
Q 012061 110 PLSALIT-DVTLISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 110 ~~D~vI~-D~~~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
.||+||. |+.-...+..=|.++|||.+.+.-+
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 7998884 5434446667788899999988655
No 253
>PRK14099 glycogen synthase; Provisional
Probab=44.70 E-value=39 Score=34.30 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCCEEEEEcC--------CCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 9 SHPHVALIPS--------AGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 9 ~~~~il~~~~--------~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
++|||++++. ++.|+ -.-+|.++|+++||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~d--v~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLAD--VAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHH--HHHHHHHHHHHCCCcEEEEeCCC
Confidence 4689999874 33343 45688999999999999999864
No 254
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=44.53 E-value=51 Score=27.19 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=21.5
Q ss_pred cCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 357 VGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..++++|+|-| .+.++...++|+|++.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 44588886654 7788999999999985
No 255
>PLN02929 NADH kinase
Probab=44.44 E-value=42 Score=31.43 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=43.0
Q ss_pred cCcCcEEeecCcchHHHHHH---hCCcEEecCCcc------cchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHH
Q 012061 355 RAVGGFVSHGGWNSLVEAAR---HGVPLLVWPHFG------DQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 355 ~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
..++++|+-||-||++.+.. .++|++.+=... .+..|.-. +..-.|-.. ..+++++.++|+
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~---------~~~~~~~~~~L~ 132 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLC---------AATAEDFEQVLD 132 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cccCccccc---------cCCHHHHHHHHH
Confidence 44678999999999999855 468888874421 12222211 111244333 356899999999
Q ss_pred HHhcCH
Q 012061 426 DLMAND 431 (472)
Q Consensus 426 ~~l~~~ 431 (472)
+++++.
T Consensus 133 ~il~g~ 138 (301)
T PLN02929 133 DVLFGR 138 (301)
T ss_pred HHHcCC
Confidence 999753
No 256
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=44.11 E-value=20 Score=32.58 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCC
Q 012061 26 PFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 26 P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
-.-.|+++|+++||+|++++|..
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35689999999999999999864
No 257
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=44.06 E-value=98 Score=28.39 Aligned_cols=25 Identities=12% Similarity=-0.082 Sum_probs=17.7
Q ss_pred HHHHHHHHHhC---CCeEEEEEcCCCCc
Q 012061 27 FLRLAASLVQH---HCRVTLITTYPTVS 51 (472)
Q Consensus 27 ~l~La~~L~~r---Gh~Vt~~~~~~~~~ 51 (472)
+.+|+++|.+. |++|+++.|...++
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 56677777663 47999998875543
No 258
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=43.97 E-value=1.6e+02 Score=24.07 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeC
Q 012061 273 EGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKG 312 (472)
Q Consensus 273 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 312 (472)
...+|++++||......+.++++++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4458999999987667888888988885 35677665543
No 259
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.84 E-value=35 Score=32.18 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.+|+|.|+..+..| ..+|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999888877 57999999999999988654
No 260
>PRK13059 putative lipid kinase; Reviewed
Probab=43.34 E-value=1.5e+02 Score=27.75 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.7
Q ss_pred CcCcEEeecCcchHHHHH---H---hCCcEEecCCc
Q 012061 356 AVGGFVSHGGWNSLVEAA---R---HGVPLLVWPHF 385 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal---~---~GvP~l~~P~~ 385 (472)
..+.+|.-||-||+.|++ . .++|+-++|..
T Consensus 56 ~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 56 SYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 356799999999988875 2 35899999964
No 261
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=43.20 E-value=24 Score=33.42 Aligned_cols=136 Identities=16% Similarity=0.041 Sum_probs=71.3
Q ss_pred ceEE-Eeeccc--ccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCC--ChH
Q 012061 275 SVVY-VSFGSR--LALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWV--DQD 349 (472)
Q Consensus 275 ~~v~-vs~GS~--~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--pq~ 349 (472)
+.|. +-.||. -..+.+.+.++++.|.+.+.++++..|+ ..+.+ .. +.+.+.. .++.+.+-. .+.
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~----~~e~~-~~----~~i~~~~--~~~~l~g~~sL~el 247 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGA----EHEEQ-RA----KRLAEGF--PYVEVLPKLSLEQV 247 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCC----HHHHH-HH----HHHHccC--CcceecCCCCHHHH
Confidence 3443 444444 2357888999999997767776544344 11111 11 1111111 223333333 233
Q ss_pred -HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCe-eeEEeecCCCCcCCcCHHHHHHHHHHH
Q 012061 350 -KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGL-GMWVRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 350 -~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~-G~~l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
.++++ +++||+- -.|.++=|.+.|+|.|++=-..|...++- .|- ...+ +...+.....+++++.++++++
T Consensus 248 aali~~--a~l~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p----~~~~~~~~-~~~~~cm~~I~~e~V~~~~~~~ 319 (322)
T PRK10964 248 ARVLAG--AKAVVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGG----YGKNQHAC-RSPGKSMADLSAETVFQKLETL 319 (322)
T ss_pred HHHHHh--CCEEEec-CCcHHHHHHHhCCCEEEEECCCCcccccC----CCCCceee-cCCCcccccCCHHHHHHHHHHH
Confidence 67755 6668887 46788889999999999732222111100 000 0011 0000124567889998888877
Q ss_pred hc
Q 012061 428 MA 429 (472)
Q Consensus 428 l~ 429 (472)
|.
T Consensus 320 l~ 321 (322)
T PRK10964 320 IS 321 (322)
T ss_pred hh
Confidence 63
No 262
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=43.05 E-value=61 Score=32.30 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=52.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCChHH
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATDPFL 90 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (472)
.|++++..+ .....|++.|.+.|-+|..+......+..+.. .. +.....|.
T Consensus 312 krvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~--------~~--------------~~~~~~D~-- 362 (432)
T TIGR01285 312 KKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL--------PV--------------ETVVIGDL-- 362 (432)
T ss_pred CEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC--------Cc--------------CcEEeCCH--
Confidence 367666533 47788999999999999888765432211000 00 00000111
Q ss_pred HHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 91 LRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 91 ~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
..+.++++ .++|+||... ....+|+++|||++-+
T Consensus 363 ----------~~l~~~i~~~~~dliig~s----~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ----------EDLEDLACAAGADLLITNS----HGRALAQRLALPLVRA 397 (432)
T ss_pred ----------HHHHHHHhhcCCCEEEECc----chHHHHHHcCCCEEEe
Confidence 13345556 6899999887 4578999999998744
No 263
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.93 E-value=34 Score=34.39 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEEcCC
Q 012061 10 HPHVALIPSAGMGHLTPF------------LRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~------------l~La~~L~~rGh~Vt~~~~~~ 48 (472)
..||++...|++=-+.|. ..||+++..+|++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 358999999999998886 578999999999999998763
No 264
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=42.58 E-value=1e+02 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=25.8
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhh
Q 012061 15 LIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQH 57 (472)
Q Consensus 15 ~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~ 57 (472)
+++.... +=.=++.+++.|.+.|++| ++++...+.++..|
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~g 43 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKL--YATEGTADFLLENG 43 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHcC
Confidence 4444433 4456889999999999987 34554545555444
No 265
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.53 E-value=38 Score=31.42 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=36.1
Q ss_pred CcCcEEeecCcchHHHHHH---hCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 356 AVGGFVSHGGWNSLVEAAR---HGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
.++++|.-||-||+++++. .++|++.++... .|- ...++++++.+++.+++++
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-------------lGF---------l~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINMGT-------------LGF---------LTEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-------------CCc---------cccCCHHHHHHHHHHHHcC
Confidence 4677999999999999984 346888776421 011 1234567788888777754
No 266
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=41.85 E-value=1.6e+02 Score=27.90 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCCceEEEeeccc----ccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCce-eccCC
Q 012061 272 PEGSVVYVSFGSR----LALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLV-VKNWV 346 (472)
Q Consensus 272 ~~~~~v~vs~GS~----~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~ 346 (472)
++++.|.+.-|+. -..+.+.+.++++.|.+.+.++++ +|++ .+.+.. +.+.+.. +.+++ ..+-.
T Consensus 172 ~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl-~G~~----~e~~~~-----~~i~~~~-~~~~~~l~g~~ 240 (334)
T TIGR02195 172 TERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVL-FGSA----KDHPAG-----NEIEALL-PGELRNLAGET 240 (334)
T ss_pred CCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEE-EECh----hhHHHH-----HHHHHhC-CcccccCCCCC
Confidence 3456888887763 234688899999998776766544 4441 121111 1111111 12221 22222
Q ss_pred --ChH-HHhcccCcCcEEeecCcchHHHHHHhCCcEEec
Q 012061 347 --DQD-KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVW 382 (472)
Q Consensus 347 --pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 382 (472)
.+. .+++ .+++||+. -.|-++=|.+.|+|.|++
T Consensus 241 sL~el~ali~--~a~l~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 241 SLDEAVDLIA--LAKAVVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred CHHHHHHHHH--hCCEEEee-CCHHHHHHHHcCCCEEEE
Confidence 233 6774 46679987 467788888999999986
No 267
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=41.66 E-value=23 Score=29.79 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=20.3
Q ss_pred chhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 388 QKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 388 Q~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
..+.+..=++.|+|+.+ |+|+|.++|...++
T Consensus 101 ~~d~~~Fe~~cGVGV~V-----------T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 101 PIDVAEFEKACGVGVVV-----------TPEQIEAAVEKYIE 131 (164)
T ss_dssp G--HHHHHHTTTTT---------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCeEE-----------CHHHHHHHHHHHHH
Confidence 34455555667999999 89999999999995
No 268
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.54 E-value=43 Score=34.77 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=38.6
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND 431 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 431 (472)
.++++|+-||-||++.+.+. ++|++.+-... +|- ....+++++.++|.++++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGF---------L~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGF---------LTEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCc---------CcccCHHHHHHHHHHHHcCC
Confidence 46889999999999999774 77888774311 121 12356788888888888643
No 269
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=41.47 E-value=45 Score=29.28 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=25.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
|+++++..+-.| -.||+.|++.||+|++.+...
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCC
Confidence 566666555544 578999999999999997653
No 270
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=40.84 E-value=2.9e+02 Score=25.40 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
|||++.-=-+. |---+..|+++|.+.| +|+++.|...++
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 45665544332 2245788999998888 799888775443
No 271
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=40.75 E-value=2.5e+02 Score=28.83 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=25.4
Q ss_pred hhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 102 LLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 102 ~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
.+++++. .+||++|.+. .+..+|+++|||.+.+
T Consensus 428 ~l~~~l~~~~~DlliG~s----~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTEPVDFLIGNS----YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhcCCCEEEECc----hHHHHHHHcCCCEEEe
Confidence 3445555 6899999887 4678899999998754
No 272
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=40.68 E-value=52 Score=33.12 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=38.0
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhC-eeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAG-LGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
.++++|+=||-||++.+.+. ++|++.+- .| +|-. ..++++++.++|.+++++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~G~LGFL---------t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPFS--------------MGSLGFM---------TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEe--------------CCCccee---------cccCHHHHHHHHHHHHcC
Confidence 57889999999999999874 46766552 11 2322 235788899999999865
Q ss_pred H
Q 012061 431 D 431 (472)
Q Consensus 431 ~ 431 (472)
+
T Consensus 319 ~ 319 (508)
T PLN02935 319 P 319 (508)
T ss_pred C
Confidence 4
No 273
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=40.64 E-value=2.3e+02 Score=24.13 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=30.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
--|.++...+.|-..-.+.+|-..+.+|++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4578888899999999999999999999999766
No 274
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.52 E-value=2.9e+02 Score=27.38 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccch
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAE 54 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 54 (472)
+--|+++..=+.|-..-.-.||+.|..+|+.|-+++...++.-+-
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~ 144 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAI 144 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHH
Confidence 345778888888999999999999999999999999887765443
No 275
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.30 E-value=41 Score=31.80 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+|+|.++..+++| .+||+.|++.||+|++....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 3689999999988 68999999999999999764
No 276
>PRK10490 sensor protein KdpD; Provisional
Probab=40.18 E-value=32 Score=37.95 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
-+++|.+=..|+-|-.+-|+.-|++|+++|++|++-.-+.+
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 35789999999999999999999999999999997665543
No 277
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=40.14 E-value=47 Score=30.44 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|.|.+..=++-|-..-...||..|+++|++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788887799999999999999999999999988443
No 278
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=40.01 E-value=68 Score=28.70 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=34.7
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc
Q 012061 13 VALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLA 53 (472)
Q Consensus 13 il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~ 53 (472)
|.|.+. |+-|-..-.+.||.+|+++|-.|+++=..++++..
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 445555 89999999999999999999999999887776554
No 279
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=39.83 E-value=2.8e+02 Score=26.55 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCceEEEeeccc----ccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcC---C-ceecc
Q 012061 273 EGSVVYVSFGSR----LALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQ---G-LVVKN 344 (472)
Q Consensus 273 ~~~~v~vs~GS~----~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~-~~~~~ 344 (472)
+++.|.+..|+. -..+.+.+.++++.|...+.++++ ++++ .+.+... ...+..... + +-..+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl-~Gg~----~e~~~~~-----~i~~~~~~~~~~~~~~l~g 248 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVL-FGSA----KDHEAGN-----EILAALNTEQQAWCRNLAG 248 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEE-EeCH----HhHHHHH-----HHHHhcccccccceeeccC
Confidence 556888888873 234688899999988766766554 4441 2211111 111111101 1 12223
Q ss_pred CCC--hH-HHhcccCcCcEEeecCcchHHHHHHhCCcEEec
Q 012061 345 WVD--QD-KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVW 382 (472)
Q Consensus 345 ~~p--q~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 382 (472)
-.+ +. .++++ +++||+. -.|-++=|.+.|+|+|.+
T Consensus 249 ~~sL~el~ali~~--a~l~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 249 ETQLEQAVILIAA--CKAIVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred CCCHHHHHHHHHh--CCEEEec-CChHHHHHHHhCCCEEEE
Confidence 332 32 67755 6668886 567888899999999986
No 280
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=39.82 E-value=1.6e+02 Score=27.92 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCcEEE-EcCCChhhhHHHHHhcCCCeEEEeCc
Q 012061 110 PLSALI-TDVTLISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 110 ~~D~vI-~D~~~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
.||+|| .|+.....+..=|.++|||++.+.-+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 588887 46545557777889999999988654
No 281
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=39.81 E-value=49 Score=30.35 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|.++.=++-|=..-...||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 678888668888999999999999999999998843
No 282
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=39.73 E-value=29 Score=27.16 Aligned_cols=32 Identities=0% Similarity=0.060 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhCCCeEEEEEcCCCCccchh
Q 012061 24 LTPFLRLAASLVQHHCRVTLITTYPTVSLAET 55 (472)
Q Consensus 24 i~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~ 55 (472)
+.|++.+.-.+.-+||++|++-|..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 46777777777889999999999877665543
No 283
>PRK11519 tyrosine kinase; Provisional
Probab=39.49 E-value=1.4e+02 Score=32.16 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=30.0
Q ss_pred CEEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIP--SAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~--~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.++++++ .|+-|--.-...||..|++.|++|.++-..
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3455444 478899999999999999999999999654
No 284
>PRK14098 glycogen synthase; Provisional
Probab=39.35 E-value=51 Score=33.47 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=28.7
Q ss_pred CCEEEEEcC--------CCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 10 HPHVALIPS--------AGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 10 ~~~il~~~~--------~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
.|+|++++. ++.|+ -+-+|.++|+++||+|.++.|..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~d--v~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALAD--FMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHH--HHHHHHHHHHHCCCeEEEEcCCC
Confidence 389999864 33343 45688999999999999999854
No 285
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=39.30 E-value=1.8e+02 Score=24.47 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=22.2
Q ss_pred cCcCcEEeecCc------chHHHHHHhCCcEEecCC
Q 012061 355 RAVGGFVSHGGW------NSLVEAARHGVPLLVWPH 384 (472)
Q Consensus 355 ~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 384 (472)
....++++|.|- +++.+|...++|+|++.-
T Consensus 63 g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 63 GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ccceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 345558888874 478889999999999853
No 286
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=39.03 E-value=44 Score=28.85 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=30.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
||++--.++.|=+.-.+.+.+.|.+.|++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 5777767777777766799999999999999998763
No 287
>PRK13337 putative lipid kinase; Reviewed
Probab=38.88 E-value=2.2e+02 Score=26.68 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=23.8
Q ss_pred CcCcEEeecCcchHHHHHHh------CCcEEecCCc
Q 012061 356 AVGGFVSHGGWNSLVEAARH------GVPLLVWPHF 385 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~------GvP~l~~P~~ 385 (472)
..+.+|.-||-||+.|++.. ..|+-++|..
T Consensus 57 ~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 57 KFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred CCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 35679999999999999862 3478889964
No 288
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=38.59 E-value=57 Score=30.47 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=33.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
|+|+++.=++-|=..-...||..|+++|++|.++=..+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 67888888999999999999999999999999885443
No 289
>PRK13604 luxD acyl transferase; Provisional
Probab=38.17 E-value=66 Score=30.28 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
+-..+++..+..++-.-+..+|+.|+++|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 34577778887788777999999999999999877
No 290
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=38.06 E-value=2.4e+02 Score=23.56 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=21.3
Q ss_pred cCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 357 VGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++.|-| .+.+|...++|||++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44577777754 6788999999999995
No 291
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=38.05 E-value=39 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.|||.|+..+..| ..+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 3789999888877 46789999999999998753
No 292
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=37.81 E-value=37 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
+++|.|+..+..| ..+|+.|.++||+|+++.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 3688999888777 578999999999999874
No 293
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=37.79 E-value=3.6e+02 Score=25.51 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=55.7
Q ss_pred CCce-eccCCC---hHHHhcccCcCcEEee--cCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCC
Q 012061 338 QGLV-VKNWVD---QDKVLSHRAVGGFVSH--GGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGT 411 (472)
Q Consensus 338 ~~~~-~~~~~p---q~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~ 411 (472)
+++. .++++| +..+|+..+++.|+|+ =|.||+.-.+..|+|.++-- +=+.|. -+.+.|+-+.. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwq-dl~e~gv~Vlf------~ 275 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQ-DLTEQGLPVLF------T 275 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHH-HHHhCCCeEEe------c
Confidence 4554 446666 5588988777667764 48999999999999999852 222332 25666887777 6
Q ss_pred cCCcCHHHHHHHHHHH
Q 012061 412 ELRAKGDEIGLKIKDL 427 (472)
Q Consensus 412 ~~~~~~~~l~~~i~~~ 427 (472)
.+.++...+.++=+++
T Consensus 276 ~d~L~~~~v~e~~rql 291 (322)
T PRK02797 276 GDDLDEDIVREAQRQL 291 (322)
T ss_pred CCcccHHHHHHHHHHH
Confidence 6778888787765544
No 294
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.74 E-value=1.2e+02 Score=29.88 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=23.5
Q ss_pred hhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEE
Q 012061 104 APLLS-PPLSALITDVTLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 104 ~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~ 138 (472)
.+.++ .+||++|... . ...+|+++|||++..
T Consensus 349 ~~~i~~~~pDl~ig~s-~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 349 KKLLKEKKADLLVAGG-K---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHhhcCCCEEEECC-c---chhhHHhcCCCEEEc
Confidence 34555 6899999887 3 457899999998743
No 295
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=37.54 E-value=36 Score=34.08 Aligned_cols=33 Identities=27% Similarity=0.197 Sum_probs=26.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
|||+|+..+-.| ++-|.+|+++||+||++-..+
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccC
Confidence 588888777544 788999999999999996543
No 296
>PLN02859 glutamine-tRNA ligase
Probab=37.48 E-value=63 Score=34.56 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=40.1
Q ss_pred chhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHHHH--hccCCChHHHH
Q 012061 388 QKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN-------DFLREQAKRIEEEARKA--IGVGGSSERTF 458 (472)
Q Consensus 388 Q~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~-------~~~~~~a~~l~~~~~~~--~~~~g~~~~~~ 458 (472)
....+..-++.|+|+.+ |+|+|.++|.+++++ ..|+.|.-.+-..+++. ++++......+
T Consensus 103 ~~d~~~Fek~CGVGV~V-----------T~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwad~~~~k~~i 171 (788)
T PLN02859 103 SFDLNKFEEACGVGVVV-----------SPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLI 171 (788)
T ss_pred ccCHHHHHHhCCCCEEE-----------CHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 34445555666999999 899999999999862 24555555555555442 34444444455
Q ss_pred HHHH
Q 012061 459 KELI 462 (472)
Q Consensus 459 ~~~~ 462 (472)
+.-+
T Consensus 172 d~~~ 175 (788)
T PLN02859 172 DKKL 175 (788)
T ss_pred HHHH
Confidence 4433
No 297
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=37.42 E-value=1.3e+02 Score=28.17 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
...|+++..++.|-..-+..|+..|.++|+.|.++...+.
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3457777779999999999999999999999999886643
No 298
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=37.33 E-value=2.1e+02 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLA 53 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~ 53 (472)
||||+.-=-+. |---+.+|+++|.+.| +|+++.|...++..
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 45555543321 2233678999999988 89999887655443
No 299
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=37.05 E-value=1.2e+02 Score=31.53 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=22.7
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++|.|-| .+.||...++|+|++-
T Consensus 76 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 445588887755 7899999999999984
No 300
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=36.97 E-value=3.3e+02 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCcc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSL 52 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~ 52 (472)
|||++.-=-+. |---+..|+++|.+. |+|+++.|...++-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 46666544332 223378899999988 79999988765443
No 301
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=36.90 E-value=51 Score=28.34 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccch
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAE 54 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 54 (472)
.||++.-.++-|=+. ...+.+.|.++|++|.++.++.-.+.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 367777777755554 8999999999999999998875444443
No 302
>PRK05920 aromatic acid decarboxylase; Validated
Probab=36.88 E-value=56 Score=28.69 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=29.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+||++--.++ ...+=...+.+.|.+.||+|+++.++.
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 4777766665 445789999999999999999998874
No 303
>PRK08322 acetolactate synthase; Reviewed
Probab=36.68 E-value=63 Score=33.35 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.0
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 355688888855 7899999999999984
No 304
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.51 E-value=64 Score=30.72 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=28.3
Q ss_pred HhHhhhhhhcC-CCCcEEEEcCCChh------h---hHHHHHhcCCCeEEEeC
Q 012061 98 RSAHLLAPLLS-PPLSALITDVTLIS------A---VLPVTINLHLPNYVLFT 140 (472)
Q Consensus 98 ~~~~~~~~ll~-~~~D~vI~D~~~~~------~---~~~vA~~lgIP~v~~~~ 140 (472)
+....+.++++ .+||++|+.+.|.. | +..+.++++||+++-..
T Consensus 67 ea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 67 EALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 34445566677 89999999984322 1 12356789999886544
No 305
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.27 E-value=56 Score=20.61 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHHH
Q 012061 416 KGDEIGLKIKDLMAN-DFLREQAKRI 440 (472)
Q Consensus 416 ~~~~l~~~i~~~l~~-~~~~~~a~~l 440 (472)
++++|..||..+.++ -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 468899999999876 5666665543
No 306
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=36.08 E-value=47 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+++++..+-.| ..+|+.|.+.||+|+.+-.
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~ 31 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDR 31 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEc
Confidence 567777766544 6899999999999999843
No 307
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=35.89 E-value=74 Score=28.18 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
++.+|++.+.++-.|-....=++-.|..+|++|++....
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 457899999999999999999999999999999999764
No 308
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.49 E-value=2.9e+02 Score=27.02 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=37.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLA 53 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~ 53 (472)
--|.|+..=+-|-..-...||..+..+|+.+-+++...++.-+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 3577778888899999999999999999999999988776443
No 309
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=35.48 E-value=46 Score=23.13 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCeEEEEEc
Q 012061 28 LRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 28 l~La~~L~~rGh~Vt~~~~ 46 (472)
+..|..|+++|++|+++=.
T Consensus 9 l~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHCCCcEEEEec
Confidence 6788999999999999943
No 310
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.48 E-value=54 Score=31.22 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.|+|.|+..+..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5799999998887 56899999999999998653
No 311
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.34 E-value=71 Score=23.49 Aligned_cols=35 Identities=23% Similarity=0.059 Sum_probs=28.0
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEE
Q 012061 11 PHVALIPSAGM--GHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 11 ~~il~~~~~~~--GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
-+|+++|.... .+..-...++..|++.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888987753 567778999999999999998753
No 312
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.14 E-value=4e+02 Score=25.34 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQH--HCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATD 87 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (472)
+|+|+++-..+.|++.=.+.+-+.|+++ +.++++++++...+.++. .|.++.+ ........ . .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~---------~p~I~~v----i~~~~~~~-~-~ 65 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKL---------NPEIDKV----IIIDKKKK-G-L 65 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhc---------ChHhhhh----cccccccc-c-c
Confidence 4799999999999999999999999997 599999998765444432 2222111 11000000 0 0
Q ss_pred hHHHHHHHHHHhHhhhhhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEE
Q 012061 88 PFLLRWEAIRRSAHLLAPLLS-PPLSALITDVTLISAVLPVTINLHLPNYV 137 (472)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~ 137 (472)
.+.. ...+.+.++ .++|+||.=. -..-...++...++|.-+
T Consensus 66 ~~~~--------~~~l~~~lr~~~yD~vidl~-~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 66 GLKE--------RLALLRTLRKERYDAVIDLQ-GLLKSALLALLLGIPFRI 107 (334)
T ss_pred chHH--------HHHHHHHhhccCCCEEEECc-ccHHHHHHHHHhCCCccc
Confidence 1111 112333444 5799999666 555666777788888643
No 313
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=35.12 E-value=45 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=21.6
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 22 GHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 22 GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
-.+.-.+-|+..|.++||+|++++++.
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npA 37 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPA 37 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHH
Confidence 345567889999999999999998874
No 314
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=35.12 E-value=1e+02 Score=25.90 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=22.0
Q ss_pred cCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 357 VGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
.+++++|+|-| .+.||...++|||++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 44588888855 6789999999999994
No 315
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=35.10 E-value=24 Score=18.11 Aligned_cols=17 Identities=18% Similarity=0.663 Sum_probs=13.7
Q ss_pred chhhhccCCCCCceEEE
Q 012061 263 LILKWLDDQPEGSVVYV 279 (472)
Q Consensus 263 ~~~~~l~~~~~~~~v~v 279 (472)
+|..|++...+...+|+
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 38889999888777775
No 316
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.78 E-value=69 Score=26.42 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=48.4
Q ss_pred cCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Q 012061 382 WPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA-NDFLREQAKRIEEEARKAIGVGGSSERTFKE 460 (472)
Q Consensus 382 ~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 460 (472)
.|....+-.+|+.+.+.--++.- -+.+.+.+.+..|+. +|+-+..+.++++.+.++ |......+.+
T Consensus 78 yPWt~~~L~aa~el~ee~eeLs~----------deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~---g~~v~~~~~d 144 (158)
T PF10083_consen 78 YPWTENALEAANELIEEDEELSP----------DEKEQFKESLPDLTKDTPKTKVAATRFKKILSKA---GSIVGDAIRD 144 (158)
T ss_pred CchHHHHHHHHHHHHHHhhcCCH----------HHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHH---hHHHHHHHHH
Confidence 45556677777777764332222 245789999999996 477788889999998887 4444556666
Q ss_pred HHHHHH
Q 012061 461 LIDKWK 466 (472)
Q Consensus 461 ~~~~~~ 466 (472)
++=++.
T Consensus 145 IlVdv~ 150 (158)
T PF10083_consen 145 ILVDVA 150 (158)
T ss_pred HHHHHH
Confidence 665554
No 317
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=34.77 E-value=1.8e+02 Score=28.77 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 18 SAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 18 ~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
.-+.|-..-.+.|.++|++||++|.=+
T Consensus 9 ~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 9 SSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 356789999999999999999999755
No 318
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=34.76 E-value=2.8e+02 Score=23.57 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=26.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
.|-+++..+.|-....+.+|-+-+-+|.+|.++-.
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 57889999999999888888887888889998843
No 319
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.70 E-value=1.6e+02 Score=27.38 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=21.7
Q ss_pred CcCcEEeecCcchHHHHHHh-----CCcEE-ecCCc
Q 012061 356 AVGGFVSHGGWNSLVEAARH-----GVPLL-VWPHF 385 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~-----GvP~l-~~P~~ 385 (472)
..+++|.-||-||+.|++.. ..|.+ ++|..
T Consensus 57 ~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 57 GVDTVIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred CCCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 35679999999999997643 34444 48863
No 320
>PRK13057 putative lipid kinase; Reviewed
Probab=34.69 E-value=2.2e+02 Score=26.45 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=24.3
Q ss_pred CcCcEEeecCcchHHHHH----HhCCcEEecCCc
Q 012061 356 AVGGFVSHGGWNSLVEAA----RHGVPLLVWPHF 385 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal----~~GvP~l~~P~~ 385 (472)
..+.+|.-||-||+.|++ ..++|+-++|..
T Consensus 50 ~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~G 83 (287)
T PRK13057 50 GVDLVIVGGGDGTLNAAAPALVETGLPLGILPLG 83 (287)
T ss_pred CCCEEEEECchHHHHHHHHHHhcCCCcEEEECCC
Confidence 356799999999999886 347899999964
No 321
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.50 E-value=40 Score=31.83 Aligned_cols=135 Identities=15% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCceEEEeeccc---ccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCC--
Q 012061 273 EGSVVYVSFGSR---LALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVD-- 347 (472)
Q Consensus 273 ~~~~v~vs~GS~---~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p-- 347 (472)
+++.|.+..|+. -..+.+.+.++++.|.+.+.++++..++ ..+.+.. +...+.. ++..+.+-.+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~----~~e~~~~-----~~i~~~~--~~~~l~g~~sL~ 246 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGN----DAEKQRA-----ERIAEAL--PGAVVLPKMSLA 246 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCC----HHHHHHH-----HHHHhhC--CCCeecCCCCHH
Confidence 345666566653 3446888999999997667776655444 1111111 1122222 2222333333
Q ss_pred hH-HHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeee-EEeecCCCCcCCcCHHHHHHHHH
Q 012061 348 QD-KVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGM-WVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 348 q~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~-~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
+. .+++ .++++|+. -.|.++=|.+.|+|.|++ ++ +.+..+..=.|-.. .+. .+.....+++++.++++
T Consensus 247 el~ali~--~a~l~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P~~~~~~~~~---~~~~~~I~~~~V~~ai~ 316 (319)
T TIGR02193 247 EVAALLA--GADAVVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGGYGKPNVALL---GESGANPTPDEVLAALE 316 (319)
T ss_pred HHHHHHH--cCCEEEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhcccCCCCceEEc---cCccCCCCHHHHHHHHH
Confidence 33 6774 46679886 567788888999999987 11 11122111111111 110 01356789999999998
Q ss_pred HHh
Q 012061 426 DLM 428 (472)
Q Consensus 426 ~~l 428 (472)
++|
T Consensus 317 ~~~ 319 (319)
T TIGR02193 317 ELL 319 (319)
T ss_pred hhC
Confidence 775
No 322
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=34.36 E-value=53 Score=30.64 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcC
Q 012061 26 PFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 26 P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.-+.|++.|+++|++|..+..+
T Consensus 12 r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 12 RQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEecc
Confidence 5678999999999999999876
No 323
>PHA02754 hypothetical protein; Provisional
Probab=34.30 E-value=63 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=18.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHH
Q 012061 424 IKDLMANDFLREQAKRIEEEARKA 447 (472)
Q Consensus 424 i~~~l~~~~~~~~a~~l~~~~~~~ 447 (472)
+.+++.++.|++..++++..+.++
T Consensus 7 i~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 7 IPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhC
Confidence 445556899999999999997765
No 324
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=34.19 E-value=1.4e+02 Score=20.82 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=22.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 421 GLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 421 ~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
.-.|.++++|+++.+.|++ +++.. .|.....++++-+++.
T Consensus 37 QlLitRLmnneeIsEeaQ~---EMA~e---Agi~~~rID~IA~fLN 76 (81)
T PF10820_consen 37 QLLITRLMNNEEISEEAQQ---EMASE---AGIDEQRIDDIANFLN 76 (81)
T ss_pred HHHHHHHhccHhhhHHHHH---HHHHH---cCCcHHHHHHHHHHHH
Confidence 3456677788888866543 33322 2555555665555554
No 325
>PRK07206 hypothetical protein; Provisional
Probab=34.13 E-value=1.3e+02 Score=29.69 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=23.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+|+++-..+. -..+++++.++|+++..++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 5777765433 3568999999999998887653
No 326
>PRK13236 nitrogenase reductase; Reviewed
Probab=34.02 E-value=80 Score=29.57 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=31.6
Q ss_pred CCCEEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 9 SHPHVALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 9 ~~~~il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+.||++-+.. ++-|-..-.+.||..|+++|++|.++=..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4566655533 78899999999999999999999999443
No 327
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=33.76 E-value=99 Score=24.22 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=33.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
||++..-++.|-......|++.|+++|.+|.++-..+
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788889999999999999999999999999887665
No 328
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.55 E-value=57 Score=32.23 Aligned_cols=31 Identities=32% Similarity=0.271 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|.++..+..| +.+|..|+++||+|+.+..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 578888777766 6889999999999998854
No 329
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=33.49 E-value=88 Score=32.67 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=22.7
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++|.|-| .+.+|.+.++|+|++-
T Consensus 63 ~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 345588888754 7899999999999983
No 330
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=33.01 E-value=69 Score=27.60 Aligned_cols=30 Identities=30% Similarity=0.296 Sum_probs=21.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
|+|.++.. ||+ -+.+|-.|+++||+|+.+=
T Consensus 1 M~I~ViGl---Gyv--Gl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGL---GYV--GLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEECC---Ccc--hHHHHHHHHhCCCEEEEEe
Confidence 67777744 444 3788999999999999883
No 331
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=32.95 E-value=1.1e+02 Score=29.50 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.1
Q ss_pred HHhcccCcCcEEeecCcch---HHHHHHhCCcEEec
Q 012061 350 KVLSHRAVGGFVSHGGWNS---LVEAARHGVPLLVW 382 (472)
Q Consensus 350 ~ll~~~~~~~~I~HgG~~s---~~eal~~GvP~l~~ 382 (472)
.++..-+-+++|++||+=| ...|...|+|.++.
T Consensus 85 ~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 85 VRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 3455545556999999987 89999999999875
No 332
>PRK04148 hypothetical protein; Provisional
Probab=32.91 E-value=96 Score=25.14 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
+.++|+.+..++ | ..+|..|++.||+|+.+
T Consensus 16 ~~~kileIG~Gf-G-----~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 16 KNKKIVELGIGF-Y-----FKVAKKLKESGFDVIVI 45 (134)
T ss_pred cCCEEEEEEecC-C-----HHHHHHHHHCCCEEEEE
Confidence 347899998883 4 35688999999999987
No 333
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=32.66 E-value=2.5e+02 Score=27.32 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=31.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
+++..-|+.|=-.-++.+|..++++|..|.+++.+..
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 5666668999999999999999999999999987643
No 334
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=32.28 E-value=2.5e+02 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=22.8
Q ss_pred CCcEEEEcCCChhhhHHHHHhcCCCeEEEeC
Q 012061 110 PLSALITDVTLISAVLPVTINLHLPNYVLFT 140 (472)
Q Consensus 110 ~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~ 140 (472)
+.|++|+.- . ....+|..+|+|++.++.
T Consensus 262 ~a~l~v~nD-S--Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD-S--APAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC-C--HHHHHHHHcCCCEEEEEC
Confidence 689999765 2 678899999999998864
No 335
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=32.17 E-value=70 Score=26.68 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=25.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.+|+++..+.-| ...++.|.+.|++||++++.
T Consensus 14 ~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 378888776543 78899999999999999643
No 336
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=32.03 E-value=90 Score=30.22 Aligned_cols=99 Identities=24% Similarity=0.179 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHH-H--HHHhhcC--CceeccCCChH---HHhcccCcC
Q 012061 287 LSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHE-L--MEKIKDQ--GLVVKNWVDQD---KVLSHRAVG 358 (472)
Q Consensus 287 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~--~~~~~~~--~~~~~~~~pq~---~ll~~~~~~ 358 (472)
.++.-+..+++++.+.+.++...+... .....+...++.. . ......+ .+.+.+|+||. .+| -+|+
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g----~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LL--w~cD 265 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEG----RALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLL--WACD 265 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCC----ccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHH--HhCc
Confidence 455567777777776666665555431 1112221111100 0 0011113 34566899987 677 3455
Q ss_pred cEEeecCcchHHHHHHhCCcEEecCCcccchhhHHH
Q 012061 359 GFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEA 394 (472)
Q Consensus 359 ~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 394 (472)
.-+-. |==|..-|..+|+|.|== +.=|.++|..
T Consensus 266 ~NfVR-GEDSfVRAqwAgkPFvWh--IYpQ~d~aHl 298 (374)
T PF10093_consen 266 FNFVR-GEDSFVRAQWAGKPFVWH--IYPQEDDAHL 298 (374)
T ss_pred cceEe-cchHHHHHHHhCCCceEe--cCcCchhhHH
Confidence 55555 566999999999998742 3335555554
No 337
>PRK08223 hypothetical protein; Validated
Probab=31.86 E-value=3.9e+02 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=22.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHC-RVTLI 44 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh-~Vt~~ 44 (472)
.+|+++..++.| -.+++.|+..|. +++++
T Consensus 28 s~VlIvG~GGLG-----s~va~~LA~aGVG~i~lv 57 (287)
T PRK08223 28 SRVAIAGLGGVG-----GIHLLTLARLGIGKFTIA 57 (287)
T ss_pred CCEEEECCCHHH-----HHHHHHHHHhCCCeEEEE
Confidence 479999998876 467889999985 66666
No 338
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.77 E-value=2.9e+02 Score=25.30 Aligned_cols=100 Identities=23% Similarity=0.204 Sum_probs=53.8
Q ss_pred EEEEEcCCCcc----ChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCCCC
Q 012061 12 HVALIPSAGMG----HLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANATD 87 (472)
Q Consensus 12 ~il~~~~~~~G----Hi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (472)
-|++.|..+.. ...-+..|++.|.++|++|.++..+...+..+. +....+. ... ..+.+..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~-----i~~~~~~--------~~~--~~~~~~~ 187 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEE-----IAAALGG--------PRV--VNLAGKT 187 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHH-----HHHhcCC--------Ccc--ccCcCCC
Confidence 45666554422 234688999999999999998876643222221 1110000 000 0000011
Q ss_pred hHHHHHHHHHHhHhhhhhhcCCCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCc
Q 012061 88 PFLLRWEAIRRSAHLLAPLLSPPLSALITDVTLISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ll~~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
.+..+ ..+++ +.|++|+-- . ....+|..+|+|++.++..
T Consensus 188 ~l~e~-----------~~li~-~~~l~I~~D-s--g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 188 SLREL-----------AALLA-RADLVVTND-S--GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred CHHHH-----------HHHHH-hCCEEEeeC-C--HHHHHHHHcCCCEEEEECC
Confidence 11111 11122 689999754 2 5778889999999988654
No 339
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.70 E-value=62 Score=29.37 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=24.2
Q ss_pred hhhhhcCCCCcEEEEcCCChhh--hHH-HHHhcCCCeEEEeC
Q 012061 102 LLAPLLSPPLSALITDVTLISA--VLP-VTINLHLPNYVLFT 140 (472)
Q Consensus 102 ~~~~ll~~~~D~vI~D~~~~~~--~~~-vA~~lgIP~v~~~~ 140 (472)
.++++++++||+||... .... ... +-+..|||++.+..
T Consensus 66 n~E~i~~l~PDLIi~~~-~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 66 NYEKIAALKPDVVIDVG-SDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CHHHHHhcCCCEEEEec-CCccchhHHHHHHhhCCCEEEEec
Confidence 44555558999999876 3322 223 33448999887754
No 340
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=31.66 E-value=69 Score=29.81 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
++|.|+..+..| ..+|+.|.++||+|+++.-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 478888888877 47899999999999998643
No 341
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=31.46 E-value=46 Score=29.72 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 23 HLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 23 Hi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|+..|...|++|.++|++|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6788999999999999999999655
No 342
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=31.43 E-value=5.5e+02 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.1
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 13 VALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 13 il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|++... ..-|-..-...|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 445533 3467888899999999999999999855
No 343
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=31.18 E-value=91 Score=30.77 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCCCEEEEEc-C-CCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 8 DSHPHVALIP-S-AGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 8 ~~~~~il~~~-~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+++|+|+.+. . |+-|=..-.+.||..|+.+|++|.++=..
T Consensus 118 ~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 3455654444 3 89999999999999999999999988433
No 344
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=31.00 E-value=1.5e+02 Score=28.89 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=45.3
Q ss_pred cCcEEeecCcchHHHHHHhC-----------------CcEEecCCcccchhhHHHHHhhCeeeE-EeecCCCCcCCcCHH
Q 012061 357 VGGFVSHGGWNSLVEAARHG-----------------VPLLVWPHFGDQKINAEAVERAGLGMW-VRSWGWGTELRAKGD 418 (472)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~G-----------------vP~l~~P~~~DQ~~na~~v~~~G~G~~-l~~~~~~~~~~~~~~ 418 (472)
.++++|.||..+.+.|+.+. .|.+..+-.. +.-+.+.+.-+|+|++ ++.+ +..+.+.+
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~lGlg~~~I~~~---~~~~md~~ 179 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARILGLGVRKIPTD---EDGRMDIE 179 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BB---TTSSB-HH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcceeeeEEEEecCC---cchhhhHH
Confidence 67899999998888776432 4566665433 4555566666799964 4321 34578889
Q ss_pred HHHHHHHHHhc
Q 012061 419 EIGLKIKDLMA 429 (472)
Q Consensus 419 ~l~~~i~~~l~ 429 (472)
+|.++|++...
T Consensus 180 ~L~~~l~~~~~ 190 (373)
T PF00282_consen 180 ALEKALEKDIA 190 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred Hhhhhhccccc
Confidence 99999887754
No 345
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=30.95 E-value=1.6e+02 Score=30.17 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=34.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
-+++..-|+.|-..-...++...+.+|..|.+++.+...+
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~ 314 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRA 314 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHH
Confidence 5677777899999999999999999999999999875433
No 346
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.86 E-value=4.9e+02 Score=25.06 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=36.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
..++-|++++-.+--||--.|.-=|..|++.|.+|.+++...
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~ 50 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVE 50 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecC
Confidence 445668999999999999999999999999999999997653
No 347
>PRK14852 hypothetical protein; Provisional
Probab=30.70 E-value=3.6e+02 Score=30.05 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=22.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHC-RVTLI 44 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh-~Vt~~ 44 (472)
.+|+++..++-|. .+++.|+..|. +++++
T Consensus 333 srVlVvGlGGlGs-----~ia~~LAraGVG~I~L~ 362 (989)
T PRK14852 333 SRVAIAGLGGVGG-----IHLMTLARTGIGNFNLA 362 (989)
T ss_pred CcEEEECCcHHHH-----HHHHHHHHcCCCeEEEE
Confidence 5899999998875 46888999886 55555
No 348
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.55 E-value=79 Score=22.54 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 26 PFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 26 P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
--+.+|..|+++|.+||++...+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 458899999999999999976643
No 349
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=30.43 E-value=61 Score=24.86 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEE
Q 012061 25 TPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 25 ~P~l~La~~L~~rGh~Vt~~~ 45 (472)
+|.+.|++.|.++|.+|.+.=
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~D 37 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYD 37 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-
T ss_pred CHHHHHHHHHHHCCCEEEEEC
Confidence 799999999999999988873
No 350
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.33 E-value=61 Score=30.81 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=26.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|.++..++.| ..+|..|++.||+|+++..
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r 31 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGR 31 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEec
Confidence 678899888876 4689999999999998865
No 351
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=30.06 E-value=51 Score=29.30 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=24.3
Q ss_pred hhcCCCCcEEEEcCCC-hhhhHHHHHhcCCCeEEEeCcc
Q 012061 105 PLLSPPLSALITDVTL-ISAVLPVTINLHLPNYVLFTAS 142 (472)
Q Consensus 105 ~ll~~~~D~vI~D~~~-~~~~~~vA~~lgIP~v~~~~~~ 142 (472)
.++.++||+||..... ......-....+||++.+....
T Consensus 55 ~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 55 AILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 3333799999988823 2455566677899998876654
No 352
>PRK05636 replicative DNA helicase; Provisional
Probab=30.00 E-value=1.5e+02 Score=30.25 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=31.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEEcCCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLV-QHHCRVTLITTYPT 49 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~-~rGh~Vt~~~~~~~ 49 (472)
=|++...|+.|-..-.+.+|...+ +.|..|.|++.+-.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 367778899999999999999876 46899999987643
No 353
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.88 E-value=53 Score=29.79 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=22.8
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecC
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P 383 (472)
.++++|+-||-||++.+++. ++|++.+-
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 35779999999999988664 67888774
No 354
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=29.73 E-value=83 Score=26.90 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=29.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLA 53 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~ 53 (472)
||++.-.++ +..+-...+.+.|.++|++|.++.++.-...+
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 455555555 45666779999999999999999887433333
No 355
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=29.69 E-value=3.3e+02 Score=22.71 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=72.5
Q ss_pred EeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcC
Q 012061 279 VSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVG 358 (472)
Q Consensus 279 vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~ 358 (472)
|-+||.. +-+..+++...|+..+.++=..+-+ .+...+.+.+.. +..++ ..++
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~S---aHRtp~~~~~~~-----~~a~~-----------------~g~~ 55 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVS---AHRTPELMLEYA-----KEAEE-----------------RGIK 55 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEEC---cccCHHHHHHHH-----HHHHH-----------------CCCe
Confidence 3355543 5677788888888888876555544 222222221111 11111 1234
Q ss_pred cEEeecCcchHHHHH---HhCCcEEecCCccc--chhhHHH-HHh--hCee--eEEeecCCCCcCCcCHHHHHHHHHHHh
Q 012061 359 GFVSHGGWNSLVEAA---RHGVPLLVWPHFGD--QKINAEA-VER--AGLG--MWVRSWGWGTELRAKGDEIGLKIKDLM 428 (472)
Q Consensus 359 ~~I~HgG~~s~~eal---~~GvP~l~~P~~~D--Q~~na~~-v~~--~G~G--~~l~~~~~~~~~~~~~~~l~~~i~~~l 428 (472)
.||.=+|...-+-.+ ..-+|+|.+|.... .-.++.. +.+ .|+. ... -.+..++.-++..|- -+
T Consensus 56 viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~------I~~~~nAa~~AaqIl-~~ 128 (156)
T TIGR01162 56 VIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVA------IGNAGNAALLAAQIL-GI 128 (156)
T ss_pred EEEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEE------cCChhHHHHHHHHHH-cC
Confidence 588877764333333 23589999998532 1222222 455 3533 332 123334444444332 23
Q ss_pred cCHHHHHHHHHHHHHHHHHh
Q 012061 429 ANDFLREQAKRIEEEARKAI 448 (472)
Q Consensus 429 ~~~~~~~~a~~l~~~~~~~~ 448 (472)
+|++++++.+..+++.++.+
T Consensus 129 ~d~~l~~kl~~~r~~~~~~v 148 (156)
T TIGR01162 129 KDPELAEKLKEYRENQKEEV 148 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 58999999998888877654
No 356
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=29.65 E-value=2.9e+02 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=21.0
Q ss_pred CCcEEEEcCCChh-----hhHHHHHhcCCCeEE
Q 012061 110 PLSALITDVTLIS-----AVLPVTINLHLPNYV 137 (472)
Q Consensus 110 ~~D~vI~D~~~~~-----~~~~vA~~lgIP~v~ 137 (472)
++|+||+.....+ ..-.+|+.+|.|++.
T Consensus 60 r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~ 92 (255)
T COG1058 60 RADVVITTGGLGPTHDDLTAEAVAKALGRPLVL 92 (255)
T ss_pred CCCEEEECCCcCCCccHhHHHHHHHHhCCCccc
Confidence 6999998774443 345689999999864
No 357
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=29.60 E-value=3.7e+02 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQH 37 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~r 37 (472)
.+++++ .++.||..=|+.|-+.|.++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 345444 56779999999999999775
No 358
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=29.52 E-value=7.8e+02 Score=26.92 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=98.3
Q ss_pred ceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceec----cCCChHH
Q 012061 275 SVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVK----NWVDQDK 350 (472)
Q Consensus 275 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~pq~~ 350 (472)
.++|+++=.+...+...++..+..|.+.|.+++.++|.. ......+...+. -|.++.+-.+...+ +-++..+
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~---~~TA~AI~r~iG-i~~~~ed~~~~~~TG~efD~ls~~~ 647 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDN---KETAEAIAREIG-IFSEDEDVSSMALTGSEFDDLSDEE 647 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCC---HHHHHHHHHHhC-CCcCCccccccccchhhhhcCCHHH
Confidence 389998877877788888899999999999999888761 111111111000 00000000000000 1122111
Q ss_pred HhcccCcCcEEeecCcc---hHHHHHHhCCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHH
Q 012061 351 VLSHRAVGGFVSHGGWN---SLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 351 ll~~~~~~~~I~HgG~~---s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
+-...+-..++..+--. -+.|+|..-.=.+.+ .+|.-.-|-.+...-+|+.. .. -..+.-.+|=+-+
T Consensus 648 ~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAM--TGDGVNDApALK~AdIGIAM------G~--~GTdVaKeAsDMV 717 (972)
T KOG0202|consen 648 LDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAM--TGDGVNDAPALKKADIGIAM------GI--SGTDVAKEASDMV 717 (972)
T ss_pred HHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEe--cCCCccchhhhhhcccceee------cC--CccHhhHhhhhcE
Confidence 11111222355555432 466677665555554 58888888888888888887 21 1223445555666
Q ss_pred hcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 428 MANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 428 l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
|.|+.|.. +-+++.+|.+-+++++.||+++..
T Consensus 718 L~DDnFst--------IvaAVEEGr~IynNik~Fir~~lS 749 (972)
T KOG0202|consen 718 LADDNFST--------IVAAVEEGRAIYNNIKNFIRYLLS 749 (972)
T ss_pred EecCcHHH--------HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77877752 233467888999999999997764
No 359
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=29.51 E-value=1e+02 Score=26.92 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
+++|.+=..|+-|-.+-|+.=|+.|.++|.+|++-.-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 5689999999999999999999999999999998765543
No 360
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=29.49 E-value=3.3e+02 Score=22.62 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=80.5
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhccc
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHR 355 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~ 355 (472)
.|-|-+||-. +-+..+..++.|++.++++-..+-+ .+..++.+.+ |-+.....+
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvS---AHRTPe~m~~-----ya~~a~~~g---------------- 57 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVS---AHRTPEKMFE-----YAEEAEERG---------------- 57 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEe---ccCCHHHHHH-----HHHHHHHCC----------------
Confidence 4777789864 5777888999999999887555544 2333332222 211222233
Q ss_pred CcCcEEeecCcc---hHHHHHHhCCcEEecCCccc---chhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 356 AVGGFVSHGGWN---SLVEAARHGVPLLVWPHFGD---QKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 356 ~~~~~I~HgG~~---s~~eal~~GvP~l~~P~~~D---Q~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
++.+|.-.|.- -=+-|-..=+|+|.+|.... .-+--.-+++.--|+-+-.-. -.+..++.-++..|- -+.
T Consensus 58 -~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTva--Ig~a~NAallAa~IL-a~~ 133 (162)
T COG0041 58 -VKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVA--IGNAANAALLAAQIL-AIK 133 (162)
T ss_pred -CeEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcCCCCCeeEEEe--ecchhhHHHHHHHHH-cCC
Confidence 33366544431 11122334789999998743 333344467764444221000 112234444443332 235
Q ss_pred CHHHHHHHHHHHHHHHHHhcc
Q 012061 430 NDFLREQAKRIEEEARKAIGV 450 (472)
Q Consensus 430 ~~~~~~~a~~l~~~~~~~~~~ 450 (472)
|++++++.+++++..++.+.+
T Consensus 134 d~~l~~kl~~~r~~~~~~V~~ 154 (162)
T COG0041 134 DPELAEKLAEFREAQTEEVLE 154 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999998886533
No 361
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=29.38 E-value=3.9e+02 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=23.2
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 14 ALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 14 l~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
..+.+.-.|+=--+..+.++|. .+.++++++..
T Consensus 5 GyyG~~N~GDe~~l~~~l~~l~-~~~~~~v~s~~ 37 (298)
T TIGR03609 5 GYYGFGNLGDEALLAALLRELP-PGVEPTVLSND 37 (298)
T ss_pred EecCCCCcchHHHHHHHHHhcC-CCCeEEEecCC
Confidence 3455566777777777877774 67888888654
No 362
>PRK03094 hypothetical protein; Provisional
Probab=29.37 E-value=50 Score=23.92 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEEcC
Q 012061 27 FLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+-.+.+.|+++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 456899999999999866543
No 363
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.37 E-value=2.6e+02 Score=26.66 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=57.3
Q ss_pred CEEEEEcCCCcc-----ChHHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCC
Q 012061 11 PHVALIPSAGMG-----HLTPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANA 85 (472)
Q Consensus 11 ~~il~~~~~~~G-----Hi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (472)
..|++.|..+.| -..=+..|++.|.++|..|.++.++...+..+ ++....+.. .. +.+
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~-----~i~~~~~~~----~~--------l~~ 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAE-----EIAKGLPNA----VI--------LAG 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHH-----HHHHhcCCc----cc--------cCC
Confidence 468888883432 24568999999999999888887762222221 111111100 00 111
Q ss_pred CChHHHHHHHHHHhHhhhhhhcCCCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCc
Q 012061 86 TDPFLLRWEAIRRSAHLLAPLLSPPLSALITDVTLISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
...+..+ ..++. +.|++|+.- .+...+|..+|.|+|.++..
T Consensus 239 k~sL~e~-----------~~li~-~a~l~I~~D---Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 239 KTSLEEL-----------AALIA-GADLVIGND---SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred CCCHHHH-----------HHHHh-cCCEEEccC---ChHHHHHHHcCCCEEEEECC
Confidence 1112221 12222 688888554 26788999999999988755
No 364
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.32 E-value=1.2e+02 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.9
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 14 ALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 14 l~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+++..+..+.-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4555566667778999999999999999888543
No 365
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=29.23 E-value=62 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=23.9
Q ss_pred CEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIP-SAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~-~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|.|+. .+..| ..||+.|+++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 5788885 45544 4789999999999998754
No 366
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=29.04 E-value=2.7e+02 Score=24.33 Aligned_cols=34 Identities=3% Similarity=0.140 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHH--CRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rG--h~Vt~~~~~ 47 (472)
|||+++..+.-+- +.+|.+.+.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 6888888877333 446666777754 677765444
No 367
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.03 E-value=1.2e+02 Score=21.78 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=28.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
+++...++-|=-.-...|+..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788889999999999999999998885
No 368
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=28.60 E-value=1e+02 Score=30.11 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 7 FDSHPHVALIPS--AGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 7 ~~~~~~il~~~~--~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
..++++|+.+.. |+-|=..-...||..|+.+|++|.++=..+
T Consensus 100 ~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 345566555443 899999999999999999999999885443
No 369
>PRK08309 short chain dehydrogenase; Provisional
Probab=28.52 E-value=85 Score=26.80 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+++++. ++ | +. ..+++.|.++|++|++++-
T Consensus 1 m~vlVtG-Gt-G-~g--g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 1 MHALVIG-GT-G-ML--KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CEEEEEC-cC-H-HH--HHHHHHHHHCcCEEEEEEC
Confidence 4555554 33 5 22 4699999999999998754
No 370
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=28.25 E-value=91 Score=26.90 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=30.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEEcCCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQ-HHCRVTLITTYPT 49 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~-rGh~Vt~~~~~~~ 49 (472)
+||++.-.++-| .+=...|.+.|.+ .||+|.++.++.-
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 367777667756 6779999999999 5999999988743
No 371
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=28.03 E-value=1.6e+02 Score=29.08 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQH-HCRVTLI 44 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~r-Gh~Vt~~ 44 (472)
|+|+++..++..| .|++.|.+. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 7899999998777 599999886 5444444
No 372
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.79 E-value=65 Score=32.96 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=24.2
Q ss_pred hhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEe
Q 012061 104 APLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 104 ~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~ 139 (472)
+++++ .+||+|+.+. +...+|+++|||++.++
T Consensus 367 ~~~I~~~~pdliiGs~----~er~ia~~lgiP~~~is 399 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ----MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHhcCCCEEEECc----hhhHHHHHhCCCEEEee
Confidence 44555 5899999887 45567899999997653
No 373
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=27.70 E-value=1.4e+02 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=22.3
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhC
Q 012061 272 PEGSVVYVSFGSRLALSMEQTKELGDGLLSS 302 (472)
Q Consensus 272 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 302 (472)
+.+..+|+++||......+.+...+..|...
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3445799999998654566777777777664
No 374
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=27.69 E-value=92 Score=30.92 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
..++.||+++..+.-| +..|+.|...+++||++.+..+
T Consensus 7 ~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 3445689998877655 4467888777899999976643
No 375
>PRK00784 cobyric acid synthase; Provisional
Probab=27.57 E-value=2.8e+02 Score=28.18 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=28.6
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 12 HVALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 12 ~il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
+|++... ..-|=..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 3666655 4579999999999999999999997754
No 376
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=27.55 E-value=1.7e+02 Score=26.19 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCccC--h--HHHHHHHHHHHhCCCeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCC
Q 012061 10 HPHVALIPSAGMGH--L--TPFLRLAASLVQHHCRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANA 85 (472)
Q Consensus 10 ~~~il~~~~~~~GH--i--~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (472)
+..|++.+..+... + .-+..|++.|.++|..|.++.++... +......+....+.- . .... +
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~---~~~~~~~~~~~~~~~-~--~~~~--------~ 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ---EKEIADQIAAGLQNP-V--INLA--------G 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH---HHHHHHHHHTTHTTT-T--EEET--------T
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH---HHHHHHHHHHhcccc-e--Eeec--------C
Confidence 44678877765422 2 22689999999999888888776431 111111111110000 0 1111 1
Q ss_pred CChHHHHHHHHHHhHhhhhhhcCCCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCcc
Q 012061 86 TDPFLLRWEAIRRSAHLLAPLLSPPLSALITDVTLISAVLPVTINLHLPNYVLFTAS 142 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~ 142 (472)
...+..+. .++. ..|++|+-- . +...+|..+|+|.+.++...
T Consensus 171 ~~~l~e~~-----------ali~-~a~~~I~~D-t--g~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 KTSLRELA-----------ALIS-RADLVIGND-T--GPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp TS-HHHHH-----------HHHH-TSSEEEEES-S--HHHHHHHHTT--EEEEESSS
T ss_pred CCCHHHHH-----------HHHh-cCCEEEecC-C--hHHHHHHHHhCCEEEEecCC
Confidence 11111111 1122 689999655 2 67889999999999887654
No 377
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.33 E-value=1e+02 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.6
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 17 PSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 17 ~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
..+..--++|..-++...+.+|++|+++.+.
T Consensus 10 ~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 10 ASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred eCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 3356678999999999999999999999764
No 378
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.28 E-value=69 Score=32.82 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=24.1
Q ss_pred hhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEe
Q 012061 104 APLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 104 ~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~ 139 (472)
.+.++ .+||+||.+. ....+|+++|||++.+.
T Consensus 355 ~~~i~~~~PdliiG~~----~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 355 EDAIAEAAPELVLGTQ----MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHhcCCCEEEEcc----hHHHHHHHcCCCEEEec
Confidence 34444 5899999877 46679999999987553
No 379
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=27.21 E-value=53 Score=32.24 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCccChHHHH---HHHHHHHhCCCeEEEEEcCCCC
Q 012061 19 AGMGHLTPFL---RLAASLVQHHCRVTLITTYPTV 50 (472)
Q Consensus 19 ~~~GHi~P~l---~La~~L~~rGh~Vt~~~~~~~~ 50 (472)
+-.||+.|++ .+++-++.+||+|.+++..+-+
T Consensus 14 lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDeh 48 (391)
T PF09334_consen 14 LHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEH 48 (391)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred CCCChhHHHHHHHHHHHHHhhcccceeeEEecchh
Confidence 3469999877 5788888899999999976543
No 380
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=27.18 E-value=1.5e+02 Score=22.84 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=15.7
Q ss_pred cCcchHHHH---HHhCCcEEecCC
Q 012061 364 GGWNSLVEA---ARHGVPLLVWPH 384 (472)
Q Consensus 364 gG~~s~~ea---l~~GvP~l~~P~ 384 (472)
.+.||..|. .+.|+|++++-.
T Consensus 74 ~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 74 PDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp --HHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCcHHHHHHHHHHCCCEEEEEEc
Confidence 488999995 677999998753
No 381
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=27.14 E-value=4.8e+02 Score=26.19 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=28.7
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+|++... ..-|=..-...|++.|+++|++|..+-+.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 4666644 45688888999999999999999988653
No 382
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=27.13 E-value=85 Score=31.62 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 1 MSDSGGFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+......+..+|+++..+..| +..|+.|.++|++|+++=-
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aG-----L~aA~~l~~~G~~v~vfE~ 41 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAG-----LVAARELRREGHTVVVFER 41 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHH-----HHHHHHHHhcCCeEEEEec
Confidence 4553334445689999888655 6679999999999999953
No 383
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=27.12 E-value=5.3e+02 Score=25.50 Aligned_cols=33 Identities=27% Similarity=0.190 Sum_probs=26.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
|+|+++..+++-| +||+.|++.+.--.++..+.
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apg 33 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPG 33 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCC
Confidence 7899999999999 68999999775555554443
No 384
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=27.10 E-value=1.2e+02 Score=25.82 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=31.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
..++++..++.|=.+=..++++++.++|+.|.|++..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 4689999999999999999999999999999999764
No 385
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=27.03 E-value=79 Score=29.89 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|+|.|+..+..| ..+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 689999888877 46788899999999988653
No 386
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.03 E-value=1.1e+02 Score=30.15 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.6
Q ss_pred cEEeecCcchHHHHHHhCCcEEecC
Q 012061 359 GFVSHGGWNSLVEAARHGVPLLVWP 383 (472)
Q Consensus 359 ~~I~HgG~~s~~eal~~GvP~l~~P 383 (472)
...|+||..-+-|-=++|+|.+.+-
T Consensus 347 gtCtrcga~m~keiE~~GIPvV~i~ 371 (431)
T TIGR01917 347 GTCTRCGATMVKEIERAGIPVVHIC 371 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEe
Confidence 5678888888888888999999874
No 387
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=27.00 E-value=1.1e+02 Score=30.12 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=20.6
Q ss_pred cEEeecCcchHHHHHHhCCcEEecC
Q 012061 359 GFVSHGGWNSLVEAARHGVPLLVWP 383 (472)
Q Consensus 359 ~~I~HgG~~s~~eal~~GvP~l~~P 383 (472)
...|+||...+-|-=++|+|.+.+-
T Consensus 347 gtC~r~~a~m~keiE~~GiPvv~~~ 371 (431)
T TIGR01918 347 GTCTRCGATMVKEIERAGIPVVHMC 371 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEe
Confidence 5678888888888888999998864
No 388
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.00 E-value=1.1e+02 Score=29.94 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=31.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
|++-.-|+-|--.=+++++..|+++| .|.+++.+.-
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES 131 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES 131 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC
Confidence 55556699999999999999999999 9999998843
No 389
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=26.96 E-value=62 Score=27.16 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=28.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC--Cccchhhhh
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT--VSLAETQHV 58 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~ 58 (472)
+|.++.++++||- -|.-|++.|++|++..-+.- .+.+++.|+
T Consensus 6 ~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf 49 (165)
T PF07991_consen 6 TIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGF 49 (165)
T ss_dssp EEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-
T ss_pred EEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCC
Confidence 7999999999985 57889999999998876543 233344454
No 390
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.88 E-value=2.6e+02 Score=20.71 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcc-CCC---hHHHHHHHHHHHHh
Q 012061 418 DEIGLKIKDLMANDFLREQAKRIEEEARKAIGV-GGS---SERTFKELIDKWKC 467 (472)
Q Consensus 418 ~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~-~g~---~~~~~~~~~~~~~~ 467 (472)
.+....++++++|...-+|.++.++...+.... |.+ ....+-.+++++++
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisn 69 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISN 69 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Confidence 345556667778877666666666666555443 433 33344566666664
No 391
>PRK07773 replicative DNA helicase; Validated
Probab=26.80 E-value=3.1e+02 Score=30.39 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=31.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEEcCCCC
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQH-HCRVTLITTYPTV 50 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~r-Gh~Vt~~~~~~~~ 50 (472)
|++..-|+.|=..-.+.+|...+.+ |..|.|++-+-..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~ 258 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSK 258 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 6777779999999999999998764 8899999876443
No 392
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=26.79 E-value=69 Score=32.74 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=24.3
Q ss_pred hhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEe
Q 012061 104 APLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 104 ~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~ 139 (472)
.+.++ .+||+||.+. ....+|+++|||++.+.
T Consensus 357 ~~~i~~~~pdliiG~~----~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 357 ADAIAALEPELVLGTQ----MERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHhcCCCEEEECh----HHHHHHHHcCCCEEEec
Confidence 34444 5899999887 46678999999987553
No 393
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.55 E-value=1e+02 Score=28.24 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=20.3
Q ss_pred eEEEeecccccCC-HHHHHHHHHHHHh--CCCceEEEEeC
Q 012061 276 VVYVSFGSRLALS-MEQTKELGDGLLS--SGCRFLWVVKG 312 (472)
Q Consensus 276 ~v~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~~~~~~~ 312 (472)
+|+|||||..... ...+..+.+.+++ .+..+.|.+.+
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 6778888875544 3366666666655 46677777665
No 394
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=26.49 E-value=8.3 Score=20.52 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=13.3
Q ss_pred CcchHHHHHHhCCcEEe
Q 012061 365 GWNSLVEAARHGVPLLV 381 (472)
Q Consensus 365 G~~s~~eal~~GvP~l~ 381 (472)
|.|+++-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888889998888765
No 395
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=26.48 E-value=75 Score=27.28 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=26.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
|++--.++-|-+. ...|.+.|.++|++|.++.++.-..
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~ 39 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKE 39 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHH
Confidence 3444444444444 4889999999999999998875433
No 396
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=26.48 E-value=83 Score=30.51 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.+++|+++..+-.| +..|-.|+++|++|+++-..
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecC
Confidence 45689999988877 99999999999999998543
No 397
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=26.43 E-value=1.6e+02 Score=25.61 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=28.3
Q ss_pred CEEEEEc-C-CCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIP-S-AGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~-~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
+|++.+. . ++-|=..-...||..|+++|++|.++=.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4544443 3 6778889999999999999999998844
No 398
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.31 E-value=81 Score=29.65 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=29.6
Q ss_pred hcccCcCcEEeecCcchHHHHHH----hCCcEEecCCccc
Q 012061 352 LSHRAVGGFVSHGGWNSLVEAAR----HGVPLLVWPHFGD 387 (472)
Q Consensus 352 l~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~D 387 (472)
|..-.++++|.=||.+|...|.. +++|++.+|-..|
T Consensus 87 l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 87 LKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 45567889999999999977754 7999999997644
No 399
>PLN02727 NAD kinase
Probab=26.27 E-value=1.2e+02 Score=33.18 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.3
Q ss_pred cCcCcEEeecCcchHHHHHHh----CCcEEecCCcccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcC
Q 012061 355 RAVGGFVSHGGWNSLVEAARH----GVPLLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAN 430 (472)
Q Consensus 355 ~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 430 (472)
..++++|+=||-||++.+.+. ++|++.+-.. -+|- ...++++++.++|.+++++
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGF---------LTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGF---------LTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Cccc---------cccCCHHHHHHHHHHHHcC
Confidence 357889999999999999775 5777776321 1221 2245788899999999864
Q ss_pred H
Q 012061 431 D 431 (472)
Q Consensus 431 ~ 431 (472)
.
T Consensus 800 ~ 800 (986)
T PLN02727 800 N 800 (986)
T ss_pred C
Confidence 3
No 400
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=26.24 E-value=1.4e+02 Score=29.04 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
+++|+|+++. +.|.+ -..|++.|.++||+|+.+.-
T Consensus 19 ~~~~~IlVtG--gtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICITG--AGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEEC--CccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 4568888774 44443 46789999999999998863
No 401
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=26.23 E-value=1.4e+02 Score=23.12 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCcee-------ccCCChHHHhccc-CcCcE
Q 012061 289 MEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVV-------KNWVDQDKVLSHR-AVGGF 360 (472)
Q Consensus 289 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~pq~~ll~~~-~~~~~ 360 (472)
-+...+++.+++++|.+.+.+...+ +...... +. .+..+. ..|+..+.++.-. .-++.
T Consensus 11 Geia~r~~ra~r~~Gi~tv~v~s~~-----d~~s~~~--------~~-ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~ 76 (110)
T PF00289_consen 11 GEIAVRIIRALRELGIETVAVNSNP-----DTVSTHV--------DM-ADEAYFEPPGPSPESYLNIEAIIDIARKEGAD 76 (110)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGG-----GTTGHHH--------HH-SSEEEEEESSSGGGTTTSHHHHHHHHHHTTES
T ss_pred CHHHHHHHHHHHHhCCcceeccCch-----hcccccc--------cc-cccceecCcchhhhhhccHHHHhhHhhhhcCc
Confidence 4446789999999999998888762 1100000 01 122222 2467766444221 12558
Q ss_pred EeecCcchHHHHH
Q 012061 361 VSHGGWNSLVEAA 373 (472)
Q Consensus 361 I~HgG~~s~~eal 373 (472)
..|+|+|-..|..
T Consensus 77 ~i~pGyg~lse~~ 89 (110)
T PF00289_consen 77 AIHPGYGFLSENA 89 (110)
T ss_dssp EEESTSSTTTTHH
T ss_pred ccccccchhHHHH
Confidence 8999999887764
No 402
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=26.18 E-value=2.3e+02 Score=31.45 Aligned_cols=32 Identities=3% Similarity=-0.030 Sum_probs=24.5
Q ss_pred hhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEe
Q 012061 104 APLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 104 ~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~ 139 (472)
.++++ .+||++|... . ...+|+++|||++-..
T Consensus 382 ~~~i~~~~pDLlig~~-~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 382 LRVMREKMPDLIVAGG-K---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHhcCCCEEEecC-c---hhhHHHHcCCCeEEcc
Confidence 34555 6999999877 3 4568999999998554
No 403
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=26.14 E-value=2e+02 Score=31.89 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=59.8
Q ss_pred CCChHHHhcc-cCcCcEEe---ecCcc-hHHHHHHhCC---cEEecCCcccchhhHHHHHhhC-eeeEEeecCCCCcCCc
Q 012061 345 WVDQDKVLSH-RAVGGFVS---HGGWN-SLVEAARHGV---PLLVWPHFGDQKINAEAVERAG-LGMWVRSWGWGTELRA 415 (472)
Q Consensus 345 ~~pq~~ll~~-~~~~~~I~---HgG~~-s~~eal~~Gv---P~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~~~~~ 415 (472)
.+|+.++++. ...++++. .-|.| ...|+++++. -+++++-+. .-...+| -|+.+ ++ .
T Consensus 447 ~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa------Gaa~~L~~~AllV------NP--~ 512 (934)
T PLN03064 447 SLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA------GAAQSLGAGAILV------NP--W 512 (934)
T ss_pred CCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCC------chHHHhCCceEEE------CC--C
Confidence 3565543322 33334554 34876 4559999955 233333222 1122334 46677 33 4
Q ss_pred CHHHHHHHHHHHhc-CHH-HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhc
Q 012061 416 KGDEIGLKIKDLMA-NDF-LREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCN 468 (472)
Q Consensus 416 ~~~~l~~~i~~~l~-~~~-~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (472)
+.++++++|.+.|+ +++ .+++.+++.+.+.+ -++..-++.|++++...
T Consensus 513 D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 513 NITEVAASIAQALNMPEEEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 78999999999997 443 44444445544433 36677777888877644
No 404
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=26.07 E-value=1e+02 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=21.1
Q ss_pred CCcEEEEcC-CChhhhHHHHHhcCCCeEEEe
Q 012061 110 PLSALITDV-TLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 110 ~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~~ 139 (472)
+.--||++. ....-+..+|+.+|||+++-.
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 566777766 344567789999999987543
No 405
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.07 E-value=1.4e+02 Score=26.94 Aligned_cols=41 Identities=12% Similarity=-0.044 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
....++|+++.------..-+-.....|+++||+|++++-.
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 34456666655433344455566677789999999999854
No 406
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=25.94 E-value=1.4e+02 Score=26.78 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 1 MSDSGGFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+...+..-..+.++++.+ .|.+ -..+++.|+++|++|+++..
T Consensus 1 ~~~~~~~~~~~k~ilItGa-s~~I--G~~la~~l~~~G~~v~~~~r 43 (256)
T PRK06124 1 MSILQRFSLAGQVALVTGS-ARGL--GFEIARALAGAGAHVLVNGR 43 (256)
T ss_pred CCcccccCCCCCEEEEECC-CchH--HHHHHHHHHHcCCeEEEEeC
Confidence 4444333333345555544 3666 57788899999999988854
No 407
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.91 E-value=1.2e+02 Score=25.37 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=26.4
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 18 SAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 18 ~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
-|+-|=-.-...||..|+++|++|.++=..
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 388899999999999999999999998443
No 408
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.82 E-value=1.1e+02 Score=23.90 Aligned_cols=34 Identities=18% Similarity=-0.043 Sum_probs=29.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
++....++-.|-.....++..|.++|++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5677778889999999999999999999998854
No 409
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=25.66 E-value=1.3e+02 Score=26.86 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=26.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCe
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCR 40 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~ 40 (472)
-|+|...|..|--.....|.+.|+++|+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 47888889999999999999999999975
No 410
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.63 E-value=6.2e+02 Score=24.52 Aligned_cols=123 Identities=16% Similarity=0.032 Sum_probs=65.4
Q ss_pred cccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCC-hHHHhcccCcCcE
Q 012061 282 GSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVD-QDKVLSHRAVGGF 360 (472)
Q Consensus 282 GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p-q~~ll~~~~~~~~ 360 (472)
|-....+.+++.+++..++..+.+++-..... .. .-|.+| .++-. +|.. ...+...-.+..+
T Consensus 124 Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~k---pR-------tsp~~f------~g~~~-e~l~~L~~~~~~~Gl~~~ 186 (360)
T PRK12595 124 GPCSVESYEQVEAVAKALKAKGLKLLRGGAFK---PR-------TSPYDF------QGLGV-EGLKILKQVADEYGLAVI 186 (360)
T ss_pred ecccccCHHHHHHHHHHHHHcCCcEEEccccC---CC-------CCCccc------cCCCH-HHHHHHHHHHHHcCCCEE
Confidence 55544568888889999988887775543221 00 011111 11111 1111 0111112222223
Q ss_pred EeecCcchHHHHHHhCCcEEecCCc-ccchhhHHHHHhhCeeeEEeecCCCCcCC-cCHHHHHHHHHHHh
Q 012061 361 VSHGGWNSLVEAARHGVPLLVWPHF-GDQKINAEAVERAGLGMWVRSWGWGTELR-AKGDEIGLKIKDLM 428 (472)
Q Consensus 361 I~HgG~~s~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~G~G~~l~~~~~~~~~~-~~~~~l~~~i~~~l 428 (472)
-+=...-++-++..+ ++++-+|-. ..|..-.+.+.+.|.=+.+ ..+. .+.+++..+++.+.
T Consensus 187 t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkPVil------k~G~~~t~~e~~~Ave~i~ 249 (360)
T PRK12595 187 SEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKPVLL------KRGLSATIEEFIYAAEYIM 249 (360)
T ss_pred EeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCcEEE------eCCCCCCHHHHHHHHHHHH
Confidence 333333444445555 777777754 3445555666666777777 5554 68888888888876
No 411
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=25.61 E-value=1.1e+02 Score=29.03 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=24.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
|||+|+..+.. .+...++|.++||+|..+.+.+
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCC
Confidence 68999876653 3677788889999998766543
No 412
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=25.27 E-value=1.7e+02 Score=25.94 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
-+++..-|+.|=..-.+.++...+++|+.|.+++.+...+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~ 57 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREE 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 4566666899998888999988888899999999876443
No 413
>PLN02778 3,5-epimerase/4-reductase
Probab=25.17 E-value=1.8e+02 Score=27.11 Aligned_cols=35 Identities=6% Similarity=-0.090 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 6 GFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 6 ~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
++...|+|++.... |.+= ..|++.|.++||+|++.
T Consensus 5 ~~~~~~kiLVtG~t--GfiG--~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 5 AGSATLKFLIYGKT--GWIG--GLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCeEEEECCC--CHHH--HHHHHHHHhCCCEEEEe
Confidence 45556888877642 3332 36788999999999854
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=25.01 E-value=2e+02 Score=25.96 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=38.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEEcCCCCccchhhhh
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHH-CRVTLITTYPTVSLAETQHV 58 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rG-h~Vt~~~~~~~~~~~~~~~~ 58 (472)
|+|.+..=++.|-..-.--|++.|.++| ++|..+=..++.+..++.|+
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGv 49 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGV 49 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCC
Confidence 6788888899998887777788888876 99999987776666666664
No 415
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=24.98 E-value=2.6e+02 Score=28.28 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=59.6
Q ss_pred eccCCChH---HHhcccCcCcEEe--ecCcchH-HHHHHhCCc---EEecCCcccchhhHHHHHhhC-eeeEEeecCCCC
Q 012061 342 VKNWVDQD---KVLSHRAVGGFVS--HGGWNSL-VEAARHGVP---LLVWPHFGDQKINAEAVERAG-LGMWVRSWGWGT 411 (472)
Q Consensus 342 ~~~~~pq~---~ll~~~~~~~~I~--HgG~~s~-~eal~~GvP---~l~~P~~~DQ~~na~~v~~~G-~G~~l~~~~~~~ 411 (472)
+.+-+++. .++..++| ++|| ..|.|.+ .|-+++-.+ ++++--+ |...+.++ .++.+ +
T Consensus 357 ~~~~~~~~~~~aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiLSef------aGaa~~L~~~al~V------N 423 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLILSEF------AGAAEQLSEAALLV------N 423 (474)
T ss_dssp E-S---HHHHHHHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEEETT------BGGGGT-TTS-EEE-------
T ss_pred EecCCCHHHHHHHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEeecc------CCHHHHcCCccEEE------C
Confidence 33456655 44555565 4444 6788754 577777665 4444322 12234455 33677 3
Q ss_pred cCCcCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 012061 412 ELRAKGDEIGLKIKDLMA--NDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWK 466 (472)
Q Consensus 412 ~~~~~~~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (472)
+ .+.++++++|++.|+ .++.++|.+++.+.+.+. ++..=++.|+++|.
T Consensus 424 P--~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~-----~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 424 P--WDIEEVADAIHEALTMPPEERKERHARLREYVREH-----DVQWWAESFLRDLK 473 (474)
T ss_dssp T--T-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT------HHHHHHHHHHHHH
T ss_pred C--CChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhC-----CHHHHHHHHHHHhh
Confidence 2 478999999999997 346677777777777764 77888889988876
No 416
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=24.97 E-value=1.7e+02 Score=25.26 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=27.3
Q ss_pred hhhhhhcC-CCCcEEEEcC-CChhhhHHHHHhcCCCeEEEe
Q 012061 101 HLLAPLLS-PPLSALITDV-TLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 101 ~~~~~ll~-~~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~~ 139 (472)
..+.+.+. .++|+|++-. .-.+.+..+|..+|+|++...
T Consensus 40 ~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 40 KEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 34444455 6899999543 334578889999999998763
No 417
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.77 E-value=66 Score=23.38 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEEcCC
Q 012061 27 FLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+-.+.+.|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887654
No 418
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=24.69 E-value=1e+02 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
+.++|+++.++..| ..+|+.|.+.||+|++.
T Consensus 27 ~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 27 EGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 34689999887655 67899999999999954
No 419
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=24.62 E-value=4.5e+02 Score=25.50 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=24.0
Q ss_pred eEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeC
Q 012061 276 VVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKG 312 (472)
Q Consensus 276 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 312 (472)
++++++|+.+- -.-+..++.+|.+.|.++.+....
T Consensus 3 Il~~~~p~~GH--v~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 3 VLITTIGSRGD--VQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred EEEEeCCCcch--HHHHHHHHHHHHHCCCeEEEeeCH
Confidence 67788887643 333456778888888888777654
No 420
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=1.3e+02 Score=25.87 Aligned_cols=37 Identities=14% Similarity=-0.057 Sum_probs=28.4
Q ss_pred CEEEEEcC-CCcc-ChHHHHHHHHHHHhC---CCeEEEEEcC
Q 012061 11 PHVALIPS-AGMG-HLTPFLRLAASLVQH---HCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~-~~~G-Hi~P~l~La~~L~~r---Gh~Vt~~~~~ 47 (472)
|+|++..| |..| -+||....+++|-.+ |++|...--+
T Consensus 1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~~~i~g~~V~~~~lP 42 (207)
T COG2039 1 MKVLVTGFEPFGGEPINPSWEAVKELNGRIIGGAEVKGRILP 42 (207)
T ss_pred CeEEEEeccCCCCCCCChHHHHHHhcCcccccCceEEEEEcC
Confidence 46888877 4444 489999999999886 7888877654
No 421
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=24.41 E-value=92 Score=25.48 Aligned_cols=31 Identities=26% Similarity=0.108 Sum_probs=27.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEE
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQH-HCRVTL 43 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~r-Gh~Vt~ 43 (472)
++.++.-+..|..-.++||..|++. |.+|.+
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 4566778899999999999999999 999884
No 422
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.41 E-value=32 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=23.2
Q ss_pred cccCcCcEEeecCcchHHHHHHhCCcEEecCCcc
Q 012061 353 SHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFG 386 (472)
Q Consensus 353 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 386 (472)
.+..++.+|++||...+..... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4477888999999998888877 99999999763
No 423
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.33 E-value=87 Score=31.18 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=23.6
Q ss_pred hhhcC-CCCcEEEEcCCChhhhHHHHHhcCCCeEEEe
Q 012061 104 APLLS-PPLSALITDVTLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 104 ~~ll~-~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~ 139 (472)
+++++ .+||++|.+. . ...+|+++|+|++.+.
T Consensus 363 ~~~i~~~~pdliig~~-~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 363 GDMIARTEPELIFGTQ-M---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHhhCCCEEEecc-h---hhHHHHHcCCCEEEEe
Confidence 34444 5899999987 3 4557899999987653
No 424
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.24 E-value=1.8e+02 Score=30.30 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.0
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 355689998855 7788999999999995
No 425
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=24.05 E-value=1.5e+02 Score=29.05 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=30.4
Q ss_pred CCCEEE-EEcC-CCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 9 SHPHVA-LIPS-AGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 9 ~~~~il-~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
++++|+ +... |+-|-..-...||..|+.+|++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 445554 4444 899999999999999999999999884
No 426
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.99 E-value=1.8e+02 Score=24.42 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=33.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTV 50 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~ 50 (472)
+++...++-|-......++..|+++|.+|.++....++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 67778899999999999999999999999999876554
No 427
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.94 E-value=1.4e+02 Score=23.40 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=29.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.|+++++++. +...+..++.|.+.|.+++++...
T Consensus 11 di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 11 DITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 5899999887 577899999999999999988543
No 428
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=23.86 E-value=92 Score=25.29 Aligned_cols=49 Identities=8% Similarity=0.107 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhc
Q 012061 417 GDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCN 468 (472)
Q Consensus 417 ~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (472)
.|++.+.-.+.|.|++++..-..=+..|-+. +|-+...|++.++.....
T Consensus 2 Re~li~~A~~FL~~p~V~~sp~~~k~~FL~s---KGLt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 2 REDLIEQAVKFLQDPKVRNSPLEKKIAFLES---KGLTEEEIDEALGRAGSP 50 (136)
T ss_dssp HHHHHHHHHHHHCTTTCCCS-HHHHHHHHHH---CT--HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCcccccCCHHHHHHHHHc---CCCCHHHHHHHHHhcCCc
Confidence 3555555557888888887766666666554 789999999988876543
No 429
>PF15278 Sec3_C_2: Sec3 exocyst complex subunit
Probab=23.85 E-value=2.7e+02 Score=19.67 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Q 012061 418 DEIGLKIKDLMA--NDFLREQAKRIEEEARKA 447 (472)
Q Consensus 418 ~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~ 447 (472)
+.+.+..++++. |.+++++++.+.++-.++
T Consensus 13 ~~~~~~~~~~~~S~~~s~~~~VE~L~~~~~~~ 44 (86)
T PF15278_consen 13 DTFKDNQQQTEFSFNESMISNVENLFRQKMQA 44 (86)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345555556554 789999999998774443
No 430
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=23.79 E-value=1.5e+02 Score=30.79 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=22.9
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 64 RMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 355588888865 6789999999999994
No 431
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=23.52 E-value=2.8e+02 Score=20.43 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCC----hHHHHHHHHHHHHh
Q 012061 418 DEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGS----SERTFKELIDKWKC 467 (472)
Q Consensus 418 ~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~----~~~~~~~~~~~~~~ 467 (472)
++....+.++.+|...-+|.++.+.+..+...+++- ....+-.+++++++
T Consensus 9 ~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~~~vRaataIs~LdeIsn 62 (85)
T PF03685_consen 9 KQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEESPGVRAATAISILDEISN 62 (85)
T ss_dssp HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcchhHhHHHHHHHHHHhhc
Confidence 345556677777876666666666665554444433 33345566666654
No 432
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=23.49 E-value=2e+02 Score=24.62 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred hCCcEEecCCc----ccch---hhHHHHHhhCeeeEEeec------CCCCcCCcCHHHHHHHHHH
Q 012061 375 HGVPLLVWPHF----GDQK---INAEAVERAGLGMWVRSW------GWGTELRAKGDEIGLKIKD 426 (472)
Q Consensus 375 ~GvP~l~~P~~----~DQ~---~na~~v~~~G~G~~l~~~------~~~~~~~~~~~~l~~~i~~ 426 (472)
.++|.++.|-. .+.+ .|-..+.+.|+-+.-++. +.+...-.++++|.+.+.+
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g~~g~g~~~~~~~i~~~~~~ 175 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACGDYGRGALADLDDILQTIKE 175 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCCCccccCCCCHHHHHHHHHH
Confidence 48999999954 3443 455555666765554433 1123334567777777654
No 433
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=23.36 E-value=1.9e+02 Score=30.96 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=40.0
Q ss_pred HHHHHhHhhhhhhcCCCCcEEEEcCCChhhhHHHHHhcCCCeEEEeCccHHHHHHH
Q 012061 94 EAIRRSAHLLAPLLSPPLSALITDVTLISAVLPVTINLHLPNYVLFTASAKMFSLT 149 (472)
Q Consensus 94 ~~~~~~~~~~~~ll~~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~ 149 (472)
..+.+....+.+++..+||+|++|.+=.+.....|+++++|.+.+..-.+...+..
T Consensus 399 ~~~~~~~~~~~~l~~~~p~~i~~D~HP~y~st~~a~~~~~~~~~vQHH~AH~~a~m 454 (711)
T TIGR00143 399 KFFKEALNFFLRIYDFEPQDIVCDLHPQYNTTQYAEELSLPVLRVQHHHAHALAVM 454 (711)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEeCCCCchhHHHHHHcCCCeeeeeHHHHHHHHHH
Confidence 44444555566666668999999996555677789999999887776666555543
No 434
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.32 E-value=4.6e+02 Score=28.25 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=29.9
Q ss_pred CEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPS--AGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~--~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
.++++++. |+-|--.-...||..|+..|++|.++=...
T Consensus 531 ~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34554444 688889999999999999999999886543
No 435
>PRK13054 lipid kinase; Reviewed
Probab=23.31 E-value=2.3e+02 Score=26.53 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=24.2
Q ss_pred CcCcEEeecCcchHHHHHHh------C--CcEEecCCc
Q 012061 356 AVGGFVSHGGWNSLVEAARH------G--VPLLVWPHF 385 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~------G--vP~l~~P~~ 385 (472)
..+++|.-||-||+.|++.. + +|+-++|..
T Consensus 56 ~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 56 GVATVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred CCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 35679999999999998755 3 588999964
No 436
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.24 E-value=5e+02 Score=24.27 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=57.9
Q ss_pred HHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHhcccCcCcEEeecCcchHHHHH
Q 012061 294 ELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVLSHRAVGGFVSHGGWNSLVEAA 373 (472)
Q Consensus 294 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal 373 (472)
.+++.|++.+..+++..+.. ..++..|.+..+..-+-+ |..+| |+- .|.+....++
T Consensus 160 ~~~~~l~~~~~Dlivlagym-----------~il~~~~l~~~~~~iiNi-----HpSlL--P~f------~G~~~~~~ai 215 (289)
T PRK13010 160 QILDLIETSGAELVVLARYM-----------QVLSDDLSRKLSGRAINI-----HHSFL--PGF------KGARPYHQAH 215 (289)
T ss_pred HHHHHHHHhCCCEEEEehhh-----------hhCCHHHHhhccCCceee-----CcccC--CCC------CCCCHHHHHH
Confidence 45666666677777777651 345666655543221111 22344 442 4889999999
Q ss_pred HhCCcEEecCCc--ccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHh
Q 012061 374 RHGVPLLVWPHF--GDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLM 428 (472)
Q Consensus 374 ~~GvP~l~~P~~--~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 428 (472)
..|+....+=.+ .+..+.+..+.+.-+- + . ..-|.++|.+.+.++-
T Consensus 216 ~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~--V------~-~~dt~e~L~~r~~~~E 263 (289)
T PRK13010 216 ARGVKLIGATAHFVTDDLDEGPIIEQDVER--V------D-HSYSPEDLVAKGRDVE 263 (289)
T ss_pred HcCCCeEEEEEEEEcCCCCCCCceEEEEEE--c------C-CCCCHHHHHHHHHHHH
Confidence 999998776543 3333443333333222 2 1 1236788888887763
No 437
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=23.21 E-value=1.2e+02 Score=25.78 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=26.8
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 17 PSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 17 ~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
.-|+-|=..-...||..|+++|++|.++-...
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~ 37 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDP 37 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEEST
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCc
Confidence 34788899999999999999999999996643
No 438
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.20 E-value=1.6e+02 Score=26.65 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=29.1
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 12 HVALIPS-AGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 12 ~il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
.|++.+. ++-|=..=.-+||..|+++|++|..+=
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4555555 899999999999999999999999884
No 439
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=23.17 E-value=5.3e+02 Score=22.88 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=31.4
Q ss_pred CcEEeecC-----cchHHHHHHhCCcEEecCCccc--chhhHHHHHhhCeeeEE
Q 012061 358 GGFVSHGG-----WNSLVEAARHGVPLLVWPHFGD--QKINAEAVERAGLGMWV 404 (472)
Q Consensus 358 ~~~I~HgG-----~~s~~eal~~GvP~l~~P~~~D--Q~~na~~v~~~G~G~~l 404 (472)
..+|.-+| ..|...|+..|+|+.++|-..+ +..-..++-+.|+....
T Consensus 158 ~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~ 211 (220)
T TIGR00732 158 AVLVVEAPLKSGALITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT 211 (220)
T ss_pred EEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC
Confidence 34555554 3567778999999999997644 34445667777864433
No 440
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=23.17 E-value=3.7e+02 Score=26.52 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=25.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
|+|+++..+..+ ..|++++++.|+.++++..+.
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECC
Confidence 689999888864 468888888888777776553
No 441
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=23.16 E-value=1.1e+02 Score=28.48 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=23.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+|+++.. .|.+= ..|++.|.++||+|+.+...
T Consensus 2 ~ILVtG~--tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGG--AGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred eEEEEcC--cccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 4555543 34444 89999999999999999754
No 442
>PRK09330 cell division protein FtsZ; Validated
Probab=23.15 E-value=7.2e+02 Score=24.37 Aligned_cols=120 Identities=11% Similarity=0.045 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEEcCCCCccchhhhhhhhhhcCCCccceEEeecCCCCCCCCC
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHH-CRVTLITTYPTVSLAETQHVSHFLSAYPQVTAKRFHLLPFDPNSANA 85 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rG-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (472)
.....+|-++..++-| ......|.+.| +.|.|+.-......+..... ..++.+-..-...+..
T Consensus 10 ~~~~~~IkViGvGG~G-----~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a-----------~~ki~lG~~~t~GlGa 73 (384)
T PRK09330 10 ENQGAVIKVIGVGGGG-----GNAVNRMIEEGIQGVEFIAANTDAQALLKSKA-----------PVKIQLGEKLTRGLGA 73 (384)
T ss_pred cccCCeEEEEEECCcH-----HHHHHHHHHcCCCCceEEEEeCcHHHHhcCCC-----------CeEEEcCCcccccCCC
Confidence 3445789999988876 45666777766 55666554432222221111 1223322211111111
Q ss_pred CChHHHHHHHHHHhHhhhhhhcCCCCcEEEEcCC--------ChhhhHHHHHhcCCCeEEEeCccH
Q 012061 86 TDPFLLRWEAIRRSAHLLAPLLSPPLSALITDVT--------LISAVLPVTINLHLPNYVLFTASA 143 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~~~~D~vI~D~~--------~~~~~~~vA~~lgIP~v~~~~~~~ 143 (472)
......-.....+..+.+++.++ ..|+|+.-.. ..+....+|+++|++++.+.+.|.
T Consensus 74 G~~pe~G~~aaee~~e~I~~~l~-~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF 138 (384)
T PRK09330 74 GANPEVGRKAAEESREEIREALE-GADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPF 138 (384)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 22222323333444445555555 6676664321 122234577889999988877653
No 443
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.99 E-value=4.7e+02 Score=22.13 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCChHHHh
Q 012061 273 EGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVDQDKVL 352 (472)
Q Consensus 273 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~pq~~ll 352 (472)
.+.+-.+.+|.++ +.++..++..|.+++..-.. ... ...+. ..+ + .+.+-++++
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~-----~~~-------~~~~~----~~~--~-~~~~l~ell 89 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRS-----PKP-------EEGAD----EFG--V-EYVSLDELL 89 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESS-----CHH-------HHHHH----HTT--E-EESSHHHHH
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEeccc-----CCh-------hhhcc----ccc--c-eeeehhhhc
Confidence 4458888999886 56666666778776554443 110 00010 012 2 566888999
Q ss_pred cccCcCcEEeecCcchHHHHHHhCCcEEecCCc--ccchhhHHHHHhhCee-eEEeecCCCCcCCcCHHHHHHHHH
Q 012061 353 SHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHF--GDQKINAEAVERAGLG-MWVRSWGWGTELRAKGDEIGLKIK 425 (472)
Q Consensus 353 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~G~G-~~l~~~~~~~~~~~~~~~l~~~i~ 425 (472)
+.++ .++.|+ |.. ..+..|+..++..+=| +.++.. +...++.+.|.++++
T Consensus 90 ~~aD--iv~~~~------------------plt~~T~~li~~~~l~~mk~ga~lvN~a---RG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 90 AQAD--IVSLHL------------------PLTPETRGLINAEFLAKMKPGAVLVNVA---RGELVDEDALLDALE 142 (178)
T ss_dssp HH-S--EEEE-S------------------SSSTTTTTSBSHHHHHTSTTTEEEEESS---SGGGB-HHHHHHHHH
T ss_pred chhh--hhhhhh------------------ccccccceeeeeeeeeccccceEEEecc---chhhhhhhHHHHHHh
Confidence 6644 488776 443 3578889999988655 445331 445677788877775
No 444
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=22.99 E-value=1.7e+02 Score=21.19 Aligned_cols=48 Identities=6% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 012061 417 GDEIGLKIKDLMANDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKC 467 (472)
Q Consensus 417 ~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (472)
.+-|+++|+. |.. .-.+.+.|.+.+.+....|.+....+++|++..+.
T Consensus 30 SEvvR~aLRl-le~--~e~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~ 77 (80)
T PF03693_consen 30 SEVVREALRL-LEE--REAKLEALREALQEGLESGESEPFDMDDILARARR 77 (80)
T ss_dssp HHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH
T ss_pred HHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHh
Confidence 4567777764 432 22455678888877666666666777888876553
No 445
>PRK10037 cell division protein; Provisional
Probab=22.97 E-value=1.2e+02 Score=27.39 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=29.1
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 12 HVALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 12 ~il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
.|.+... ++-|=..-...||..|+++|++|.++=.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 3555555 8889999999999999999999999843
No 446
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.91 E-value=81 Score=29.12 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=24.5
Q ss_pred hhhhhcCCCCcEEEEcCCChh-h----hHHHHHhcCCCeEEEe
Q 012061 102 LLAPLLSPPLSALITDVTLIS-A----VLPVTINLHLPNYVLF 139 (472)
Q Consensus 102 ~~~~ll~~~~D~vI~D~~~~~-~----~~~vA~~lgIP~v~~~ 139 (472)
.++.+++++||+||.+.+... . ...--++.|+|++.+.
T Consensus 71 n~E~I~~l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~ 113 (284)
T cd01148 71 SKETVLAARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILP 113 (284)
T ss_pred CHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECc
Confidence 455555589999999862221 1 1455567899988763
No 447
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=22.87 E-value=4.6e+02 Score=25.61 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=56.3
Q ss_pred CCceeccCCCh----HHHhcccCcCcEEeecCcchHHHHHHhCCcEEecCCcccchhhHHHHHhhCeee-EEeecCCCCc
Q 012061 338 QGLVVKNWVDQ----DKVLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGDQKINAEAVERAGLGM-WVRSWGWGTE 412 (472)
Q Consensus 338 ~~~~~~~~~pq----~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~G~G~-~l~~~~~~~~ 412 (472)
.++++ .-.++ ..++ +.|+.+|. .=+-++.-|++.|+|.+++-+ |+.+...+++.|.-- .+ +.
T Consensus 266 ~~i~~-~~d~~~~~~~~~l--~~~dl~Vg-~R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~------~i 332 (385)
T COG2327 266 AEILV-SSDEYAEELGGIL--AACDLIVG-MRLHSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAI------DI 332 (385)
T ss_pred cceEe-ecchHHHHHHHHh--ccCceEEe-ehhHHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccc------cC
Confidence 55554 33344 3455 34544443 335578889999999999854 556667777777643 34 56
Q ss_pred CCcCHHHHHHHHHHHhc-CHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMA-NDFLREQ 436 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~-~~~~~~~ 436 (472)
..++.+.+...+.+.+. +++.+++
T Consensus 333 ~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 333 DPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred CCCchHHHHHHHHHHHhccHHHHhh
Confidence 77889999888888875 4565554
No 448
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.76 E-value=83 Score=29.66 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.2
Q ss_pred CcCcEEeecCcchHHHHHHh----CCcEEecCC
Q 012061 356 AVGGFVSHGGWNSLVEAARH----GVPLLVWPH 384 (472)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~----GvP~l~~P~ 384 (472)
.++++|+-||-||+++++.. ++|++.+..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 35679999999999999864 789888864
No 449
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.72 E-value=1.1e+02 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=25.7
Q ss_pred hhhhcC-CCCcEEEEcCCChh-----hhHHHHHhcCCCeEEE
Q 012061 103 LAPLLS-PPLSALITDVTLIS-----AVLPVTINLHLPNYVL 138 (472)
Q Consensus 103 ~~~ll~-~~~D~vI~D~~~~~-----~~~~vA~~lgIP~v~~ 138 (472)
...+++ .+.|+||+-. ..- .=..+|+.+|||++++
T Consensus 188 n~all~q~~id~vItK~-SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 188 NKALLEQYRIDVVVTKN-SGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHHHhCCCEEEEcc-CCcccCcHHHHHHHHHcCCcEEEE
Confidence 345666 6999999876 332 2357899999998876
No 450
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.70 E-value=2.2e+02 Score=26.28 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=34.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
-|+|+..++-|-..-...||..|+++|++|.++....++.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 4667777899999999999999999999999998776543
No 451
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=22.62 E-value=3e+02 Score=28.49 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=22.9
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++|.|-| .++||..-++|+|++-
T Consensus 64 ~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 355688888855 7899999999999983
No 452
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.62 E-value=1e+02 Score=29.18 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=30.2
Q ss_pred HhcccCcCcEEeecCcchHHHHHH---hCCcEEecCCccc
Q 012061 351 VLSHRAVGGFVSHGGWNSLVEAAR---HGVPLLVWPHFGD 387 (472)
Q Consensus 351 ll~~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~D 387 (472)
.|..-.++++|.=||.+|..-|.. +|+|++.+|-..|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 355577899999999999987755 5999999997644
No 453
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.60 E-value=1.9e+02 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVS 51 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~ 51 (472)
+-.|+++..++-|=..-...||..|.++|+.|.+++...++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 446788888999999999999999999999999998876654
No 454
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=22.44 E-value=3.2e+02 Score=27.63 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=64.4
Q ss_pred cCCChHH---HhcccCcCcEEe--ecCcchHH-HHHHhCCc----EEecCCcccchhhHHHHHhhCeeeEEeecCCCCcC
Q 012061 344 NWVDQDK---VLSHRAVGGFVS--HGGWNSLV-EAARHGVP----LLVWPHFGDQKINAEAVERAGLGMWVRSWGWGTEL 413 (472)
Q Consensus 344 ~~~pq~~---ll~~~~~~~~I~--HgG~~s~~-eal~~GvP----~l~~P~~~DQ~~na~~v~~~G~G~~l~~~~~~~~~ 413 (472)
.-+|+.+ ++..++| ++|| .-|.|-+. |-+++-.| +|++-- .|...++++-++.+ ++
T Consensus 338 ~~~~~~~l~alyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLILSe------fAGaA~~L~~AllV------NP- 403 (474)
T PRK10117 338 QHFDRKLLMKIFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQ------FAGAANELTSALIV------NP- 403 (474)
T ss_pred CCCCHHHHHHHHHhccE-EEecccccccccccchheeeecCCCCccEEEec------ccchHHHhCCCeEE------CC-
Confidence 3456554 3434554 4454 34777554 66666543 344431 22333445556677 32
Q ss_pred CcCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhc
Q 012061 414 RAKGDEIGLKIKDLMA--NDFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCN 468 (472)
Q Consensus 414 ~~~~~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (472)
.+.++++++|.+.|+ ..+-++|.+++.+.+++- ++..=.++|++++...
T Consensus 404 -~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~-----dv~~W~~~fL~~L~~~ 454 (474)
T PRK10117 404 -YDRDEVAAALDRALTMPLAERISRHAEMLDVIVKN-----DINHWQECFISDLKQI 454 (474)
T ss_pred -CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhC-----CHHHHHHHHHHHHHHh
Confidence 478999999999997 345666777777776653 7777788888888754
No 455
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.43 E-value=1.5e+02 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=33.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
..++|+.-++.|=.+=+.++|++|..+|+.|.+++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 35888888899999999999999999999999997653
No 456
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.31 E-value=1.5e+02 Score=25.64 Aligned_cols=40 Identities=18% Similarity=0.026 Sum_probs=26.6
Q ss_pred hhhhhcC-CCC--cEEEEcCCChhhhHHHHHhcCCCeEEEeCc
Q 012061 102 LLAPLLS-PPL--SALITDVTLISAVLPVTINLHLPNYVLFTA 141 (472)
Q Consensus 102 ~~~~ll~-~~~--D~vI~D~~~~~~~~~vA~~lgIP~v~~~~~ 141 (472)
.+.++++ .++ .++|....-.+++..+|+++|+|.|.+.|+
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 3345555 443 366655534557778999999999877655
No 457
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=22.28 E-value=5.9e+02 Score=26.42 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.0
Q ss_pred CcCcEEeecCcc------hHHHHHHhCCcEEecC
Q 012061 356 AVGGFVSHGGWN------SLVEAARHGVPLLVWP 383 (472)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~l~~P 383 (472)
..+++++|.|-| .+.||...++|+|++-
T Consensus 78 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 355689998866 6789999999999983
No 458
>CHL00194 ycf39 Ycf39; Provisional
Probab=22.27 E-value=1.7e+02 Score=27.59 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=22.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|+++ ++.|.+ -..|++.|.++||+|+.++-
T Consensus 1 MkIlVt--GatG~i--G~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVI--GATGTL--GRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEE--CCCcHH--HHHHHHHHHHCCCeEEEEEc
Confidence 466665 444543 35688999999999998864
No 459
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.26 E-value=1.6e+02 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.405 Sum_probs=26.5
Q ss_pred ceEEEeecccccCCHHHHHHHHHHHHh--CCCceEEEEe
Q 012061 275 SVVYVSFGSRLALSMEQTKELGDGLLS--SGCRFLWVVK 311 (472)
Q Consensus 275 ~~v~vs~GS~~~~~~~~~~~~~~al~~--~~~~~~~~~~ 311 (472)
.+|+++|||......+.+..+.+.+++ .+..+-|.+.
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 389999999866556678888888864 3456666554
No 460
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=22.18 E-value=3.1e+02 Score=19.88 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhccC
Q 012061 416 KGDEIGLKIKDLMAN-DFLREQAKRIEEEARKAIGVGGSSERTFKELIDKWKCNNN 470 (472)
Q Consensus 416 ~~~~l~~~i~~~l~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (472)
.+.++...++.+|.| +.-+++ +=+.++.+ ++++.++.|+..|+-.-+
T Consensus 4 kA~eF~~Kvd~iL~~dp~~Ke~---l~~aLk~Y-----a~~k~vd~l~~aL~~~L~ 51 (80)
T cd07354 4 KAQEFSRKVDAILGDDPVKKEQ---VFAALKQY-----AADKNVDCLVWALCGLLQ 51 (80)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH---HHHHHHHH-----HHHcCHHHHHHHHHHHhC
Confidence 357888999999974 445644 44444444 444567777777664433
No 461
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=22.13 E-value=2.4e+02 Score=18.46 Aligned_cols=49 Identities=29% Similarity=0.446 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHhccCCC-hHHHHHHHHHH
Q 012061 416 KGDEIGLKIKDLMANDFLRE-QAKRIEEEARKAIGVGGS-SERTFKELIDK 464 (472)
Q Consensus 416 ~~~~l~~~i~~~l~~~~~~~-~a~~l~~~~~~~~~~~g~-~~~~~~~~~~~ 464 (472)
|.++|..+|+++|.+...-. -.+++.+.+.+.++-.=+ -...++++|..
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~~K~~I~~~I~~ 51 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERFGVDLSSRKKFIKELIDE 51 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 35788888888886432111 234444444443433322 22345555543
No 462
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=22.12 E-value=1.4e+02 Score=28.39 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=31.7
Q ss_pred EEEE--EcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 12 HVAL--IPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 12 ~il~--~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
-|.+ ++.++.|-.--.+.|++.|.++|++|.+++-.+
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 3555 678999999999999999999999999997543
No 463
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.96 E-value=1.7e+02 Score=23.73 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
.+|++-...+-+|-.=-.-++..|.+.|++|.......
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v 39 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLS 39 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCC
Confidence 47999999999999999999999999999999987653
No 464
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=21.95 E-value=91 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.|||+++..++.|=+ +|-.|.+.||+||++...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 579999999998855 466688899999999764
No 465
>PRK14974 cell division protein FtsY; Provisional
Probab=21.92 E-value=2.1e+02 Score=27.36 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 012061 10 HPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTV 50 (472)
Q Consensus 10 ~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~ 50 (472)
+..|+|+..++-|=..-...||..|.++|++|.+++...++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 45688888899999999999999999999999998776554
No 466
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.84 E-value=1.1e+02 Score=25.90 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 8 DSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 8 ~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
.+..+|+++..++ -.=-=-+.+|+.|+++|++|+++..
T Consensus 23 ~~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 3445788887765 2233468899999999999999543
No 467
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.75 E-value=77 Score=29.60 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=27.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
+|+++.+++|||-+ |.-|+..|.+|++-.-+.-
T Consensus 20 ~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~ 52 (338)
T COG0059 20 KVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGS 52 (338)
T ss_pred eEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCc
Confidence 79999999999976 5678999999998876543
No 468
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.74 E-value=5.3e+02 Score=22.29 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC--eEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHC--RVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh--~Vt~~~~~ 47 (472)
|||+++..+..+- +..|.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEEC
Confidence 4777777765433 4566777777665 66665443
No 469
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=21.74 E-value=5.1e+02 Score=25.00 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=26.6
Q ss_pred hhhhccCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEE
Q 012061 264 ILKWLDDQPEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVV 310 (472)
Q Consensus 264 ~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~ 310 (472)
..+...+.|++.+||++-|=.++ .+.....+..|-++.-.+|.+..
T Consensus 121 Al~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~ 166 (364)
T PRK15062 121 ALKIARENPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLS 166 (364)
T ss_pred HHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEE
Confidence 44455566778899998885432 34444556555555444544433
No 470
>PRK06753 hypothetical protein; Provisional
Probab=21.64 E-value=1.5e+02 Score=28.68 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=24.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
|+|+|+..+- .-+.+|..|+++||+|+++=
T Consensus 1 ~~V~IvGgG~-----aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIGAGI-----GGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCcEEEEe
Confidence 5788877763 34788999999999999984
No 471
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=21.58 E-value=1.7e+02 Score=28.15 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 7 FDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+...++|+++..+..| +..|..|+++|++|+++...
T Consensus 15 ~~~~~~VvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 15 PPTGKKVAIIGAGPAG-----LAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CCCCCEEEEECcCHHH-----HHHHHHHHHCCCcEEEEeCC
Confidence 3445689999887433 77899999999999999654
No 472
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=21.48 E-value=7.1e+02 Score=24.52 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=56.4
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCce-eccCCChHH
Q 012061 272 PEGSVVYVSFGSRLALSMEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLV-VKNWVDQDK 350 (472)
Q Consensus 272 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~pq~~ 350 (472)
.+||.|-+|+=. ....-+..+.+.|++.|+.+++---... ++. .+++-+++..+- +.+...+..
T Consensus 183 ~~kp~I~iTmfG---vTTp~V~~~~~~Le~~G~Ev~VFHAtG~-GG~-----------aME~Li~~G~~~~VlDlTttEl 247 (403)
T PF06792_consen 183 EDKPLIGITMFG---VTTPCVDAIRERLEEEGYEVLVFHATGT-GGR-----------AMERLIREGQFDGVLDLTTTEL 247 (403)
T ss_pred CCCcEEEEECCC---CcHHHHHHHHHHHHhcCCeEEEEcCCCC-chH-----------HHHHHHHcCCcEEEEECcHHHH
Confidence 345577665422 2345677888888888888765433211 111 122222222221 225555542
Q ss_pred HhcccCcCcEEeecCcchHHHHHHhCCcEEecCCccc
Q 012061 351 VLSHRAVGGFVSHGGWNSLVEAARHGVPLLVWPHFGD 387 (472)
Q Consensus 351 ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 387 (472)
.-.. ++ =|..+|-.=...|...|+|+|+.|-.-|
T Consensus 248 ~d~l--~G-Gv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 248 ADEL--FG-GVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HHHH--hC-CCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 1111 32 3777888899999999999999986544
No 473
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=21.38 E-value=2.2e+02 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=25.9
Q ss_pred hhhhhcC-CCCcEEEEcC-CChhhhHHHHHhcCCCeEEE
Q 012061 102 LLAPLLS-PPLSALITDV-TLISAVLPVTINLHLPNYVL 138 (472)
Q Consensus 102 ~~~~ll~-~~~D~vI~D~-~~~~~~~~vA~~lgIP~v~~ 138 (472)
.+.+.+. .++|.|++=. .-...+..+|.++|+|++..
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 3444444 5799999543 12347889999999999866
No 474
>PRK13055 putative lipid kinase; Reviewed
Probab=21.20 E-value=3.6e+02 Score=25.73 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=23.5
Q ss_pred cCcEEeecCcchHHHHHHh------CCcEEecCCc
Q 012061 357 VGGFVSHGGWNSLVEAARH------GVPLLVWPHF 385 (472)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~------GvP~l~~P~~ 385 (472)
.+++|--||-||+.|++.. .+|+-++|..
T Consensus 60 ~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 60 FDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 4679999999999998753 4678889964
No 475
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=21.19 E-value=1.2e+02 Score=28.08 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=23.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
|+|.|+..+..| ..+|+.|.++||+|+++..
T Consensus 1 m~I~IIG~G~mG-----~sla~~L~~~g~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIG-----GSLGLDLRSLGHTVYGVSR 31 (279)
T ss_pred CeEEEEeecHHH-----HHHHHHHHHCCCEEEEEEC
Confidence 578888655544 5788999999999998854
No 476
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.19 E-value=77 Score=29.89 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
..++++.-+|.|=.+=+.+||.+|.++|..|+|++.+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 3588888899999999999999999999999999765
No 477
>PLN02487 zeta-carotene desaturase
Probab=21.15 E-value=1.8e+02 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEc
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITT 46 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~ 46 (472)
++++|+++..+ .--+..|..|+++||+|+++=.
T Consensus 74 ~~~~v~iiG~G-----~~Gl~~a~~L~~~g~~v~i~E~ 106 (569)
T PLN02487 74 PKLKVAIIGAG-----LAGMSTAVELLDQGHEVDIYES 106 (569)
T ss_pred CCCeEEEECCC-----HHHHHHHHHHHhCCCeeEEEec
Confidence 45789888654 2368889999999999999943
No 478
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.06 E-value=5e+02 Score=27.00 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceecc--------CCChHHHhcccCcCcEEeec
Q 012061 293 KELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKN--------WVDQDKVLSHRAVGGFVSHG 364 (472)
Q Consensus 293 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------~~pq~~ll~~~~~~~~I~Hg 364 (472)
..+++.|++.|++.++.+.+ ...-.-+..-.+..++.+.. ++-..--......+++++|.
T Consensus 8 ~~l~~~L~~~Gv~~vFgvpG------------~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~ 75 (572)
T PRK08979 8 SMIVRSLIDEGVKHIFGYPG------------GSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTS 75 (572)
T ss_pred HHHHHHHHHcCCCEEEEcCC------------cchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECC
Q ss_pred Ccc------hHHHHHHhCCcEEec---------CCcccchhhHHHHHhh--CeeeEEeecCCCCcCCcCHHHHHHHHHHH
Q 012061 365 GWN------SLVEAARHGVPLLVW---------PHFGDQKINAEAVERA--GLGMWVRSWGWGTELRAKGDEIGLKIKDL 427 (472)
Q Consensus 365 G~~------s~~eal~~GvP~l~~---------P~~~DQ~~na~~v~~~--G~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 427 (472)
|-| .+.+|..-++|||++ ....-|..+-..+.+- .....+ ....--++.|.+|++..
T Consensus 76 GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v------~~~~~~~~~l~~A~~~A 149 (572)
T PRK08979 76 GPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLV------KDAEDIPEIIKKAFYIA 149 (572)
T ss_pred CchHhHHHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEec------CCHHHHHHHHHHHHHHH
Q ss_pred hcCH
Q 012061 428 MAND 431 (472)
Q Consensus 428 l~~~ 431 (472)
+..+
T Consensus 150 ~~~~ 153 (572)
T PRK08979 150 STGR 153 (572)
T ss_pred hCCC
No 479
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=21.04 E-value=1.3e+02 Score=27.92 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=23.5
Q ss_pred hhhhhcCCCCcEEEEcCCChhhhHHHHHhcCCCeEEEe
Q 012061 102 LLAPLLSPPLSALITDVTLISAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 102 ~~~~ll~~~~D~vI~D~~~~~~~~~vA~~lgIP~v~~~ 139 (472)
.++.++.++||+||....+..-....-+.+|||++.+.
T Consensus 83 n~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~ 120 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLN 120 (289)
T ss_pred CHHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEc
Confidence 44555557999999875222223334466899987553
No 480
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=21.03 E-value=1.5e+02 Score=27.08 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=38.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccch
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAE 54 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 54 (472)
--+++...|+.|...-.++++...+++|..|.+++.......+.
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELL 67 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHH
Confidence 35888888999999999999999999999999999886654443
No 481
>PHA02698 hypothetical protein; Provisional
Probab=21.02 E-value=1.6e+02 Score=20.77 Aligned_cols=31 Identities=3% Similarity=0.198 Sum_probs=26.3
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 012061 413 LRAKGDEIGLKIKDLMANDFLREQAKRIEEE 443 (472)
Q Consensus 413 ~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~ 443 (472)
..+++++....++..|+|-.|+..++-++++
T Consensus 39 ~~CsPEdMs~mLD~FLediq~ksElqLLsqE 69 (89)
T PHA02698 39 PQCSPEDMSDMLDNFLEDIQYKSELQLLSQE 69 (89)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4688999999999999998999887777655
No 482
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=20.86 E-value=5.4e+02 Score=22.05 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHh--CCcEEecCCc----ccc---hhhHHHHHhhCeeeEEeecCC------CCcCCcCHHHHHHHHHHHhc
Q 012061 373 ARH--GVPLLVWPHF----GDQ---KINAEAVERAGLGMWVRSWGW------GTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 373 l~~--GvP~l~~P~~----~DQ---~~na~~v~~~G~G~~l~~~~~------~~~~~~~~~~l~~~i~~~l~ 429 (472)
+.. ++|.++.|-. ... ..|-.++.+.|+=+.-+..++ +...-.+.++|.+.+.+.+.
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 445 8999999963 444 455666666676655543222 12234567888888877664
No 483
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=20.80 E-value=1.2e+02 Score=28.84 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=29.7
Q ss_pred hcccCcCcEEeecCcchHHHHHH---hCCcEEecCCccc
Q 012061 352 LSHRAVGGFVSHGGWNSLVEAAR---HGVPLLVWPHFGD 387 (472)
Q Consensus 352 l~~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~D 387 (472)
|..-.++.+|.=||.+|...|.. .|+|+|++|-..|
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 44567889999999999988755 5999999998744
No 484
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=20.79 E-value=1.8e+02 Score=26.55 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=31.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCC
Q 012061 13 VALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPT 49 (472)
Q Consensus 13 il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~ 49 (472)
+++..-|+-|...-..++|..++++|++|.++.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 4455568999999999999999999999999987653
No 485
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=20.77 E-value=9e+02 Score=24.61 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCCceeccCCC-hHHHhcccCcCcEEee----
Q 012061 289 MEQTKELGDGLLSSGCRFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQGLVVKNWVD-QDKVLSHRAVGGFVSH---- 363 (472)
Q Consensus 289 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p-q~~ll~~~~~~~~I~H---- 363 (472)
.+.+.+++..+-+.+.+++ ++|. . ...++..+- .+.++.. .++.+.-|.+ ....+-++.++.++--
T Consensus 309 ~dl~~~~i~~~l~~~~~~v-ilG~-----g-d~~le~~~~-~la~~~~-~~~~~~i~~~~~la~~i~agaD~~lmPSrfE 379 (487)
T COG0297 309 LDLLLEAIDELLEQGWQLV-LLGT-----G-DPELEEALR-ALASRHP-GRVLVVIGYDEPLAHLIYAGADVILMPSRFE 379 (487)
T ss_pred hhHHHHHHHHHHHhCceEE-EEec-----C-cHHHHHHHH-HHHHhcC-ceEEEEeeecHHHHHHHHhcCCEEEeCCcCc
Confidence 5666666666666665543 4444 1 223333221 2222222 3455555554 4444555667667653
Q ss_pred -cCcchHHHHHHhCCcEEecCCcc--c----chhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhc
Q 012061 364 -GGWNSLVEAARHGVPLLVWPHFG--D----QKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 364 -gG~~s~~eal~~GvP~l~~P~~~--D----Q~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 429 (472)
||. |-++++++|.+-|+.+..+ | -..++ ....|.|..+ .. .+++++..++++.+.
T Consensus 380 PcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf~f------~~--~~~~~l~~al~rA~~ 441 (487)
T COG0297 380 PCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGFLF------LQ--TNPDHLANALRRALV 441 (487)
T ss_pred CCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEEEE------ec--CCHHHHHHHHHHHHH
Confidence 554 5678999999888888763 3 22222 4566888888 33 399999999998873
No 486
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=20.73 E-value=2.2e+02 Score=28.63 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=23.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYP 48 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~ 48 (472)
+++++. +-.-...|++.|.+.|-+|..+....
T Consensus 313 rvai~~-----~~~~~~~la~~L~elG~~v~~~~~~~ 344 (455)
T PRK14476 313 RVAIAA-----EPDLLLALGSFLAEMGAEIVAAVTTT 344 (455)
T ss_pred EEEEEe-----CHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 566664 23467789999999999998877653
No 487
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=7.7e+02 Score=23.82 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=76.2
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHH---------hCCC-ceEEEEeCCCCCcchhHHHHhhhhHHHHHHhhcCC--
Q 012061 272 PEGSVVYVSFGSRLALSMEQTKELGDGLL---------SSGC-RFLWVVKGKNVDKEDEESLKNVLGHELMEKIKDQG-- 339 (472)
Q Consensus 272 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-- 339 (472)
+.++-++||--| ..+.|.+-.+++||. ..+. ..+.++++ .+. +.+-+...++..|
T Consensus 252 ~~~pallvsSTs--wTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITG---KGP--------lkE~Y~~~I~~~~~~ 318 (444)
T KOG2941|consen 252 PERPALLVSSTS--WTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITG---KGP--------LKEKYSQEIHEKNLQ 318 (444)
T ss_pred cCCCeEEEecCC--CCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcC---CCc--------hhHHHHHHHHHhccc
Confidence 456678887433 335566667777776 1222 34444444 111 1133333343333
Q ss_pred -c-eeccCC---ChHHHhcccCcCcEEeecCcc-----hHHHHHHhCCcEEecCCcccchhhHHHHHhh-CeeeEEeecC
Q 012061 340 -L-VVKNWV---DQDKVLSHRAVGGFVSHGGWN-----SLVEAARHGVPLLVWPHFGDQKINAEAVERA-GLGMWVRSWG 408 (472)
Q Consensus 340 -~-~~~~~~---pq~~ll~~~~~~~~I~HgG~~-----s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-G~G~~l~~~~ 408 (472)
+ +...|. ++-.+|+.++.+.+.|-.-.| -+....-+|+|++.+-+- --..+++. .-|+..
T Consensus 319 ~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk-----cl~ELVkh~eNGlvF---- 389 (444)
T KOG2941|consen 319 HVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK-----CLDELVKHGENGLVF---- 389 (444)
T ss_pred ceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch-----hHHHHHhcCCCceEe----
Confidence 3 233676 456888888888888776665 466777888888887432 22233444 456666
Q ss_pred CCCcCCcCHHHHHHHHHHHhc
Q 012061 409 WGTELRAKGDEIGLKIKDLMA 429 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~~l~ 429 (472)
. +.++|++.+..++.
T Consensus 390 --~----Ds~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 390 --E----DSEELAEQLQMLFK 404 (444)
T ss_pred --c----cHHHHHHHHHHHHh
Confidence 2 57899999988886
No 488
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.68 E-value=1.1e+02 Score=29.98 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 6 GFDSHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 6 ~~~~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
+.+...+|+|+..+--| +.+|..|+++||+|+++=
T Consensus 14 ~~~~~~dV~IvGaG~aG-----l~~A~~L~~~G~~v~v~E 48 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVG-----LTLAAALKDSGLRIALIE 48 (415)
T ss_pred CCccccCEEEECcCHHH-----HHHHHHHhcCCCEEEEEe
Confidence 34445688888876544 788999999999999994
No 489
>PRK07236 hypothetical protein; Provisional
Probab=20.62 E-value=1.8e+02 Score=28.22 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEE
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLIT 45 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~ 45 (472)
++++|+|+..+-- -+.+|..|+++|++|+++=
T Consensus 5 ~~~~ViIVGaG~a-----Gl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 5 SGPRAVVIGGSLG-----GLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCeEEEECCCHH-----HHHHHHHHHhCCCCEEEEe
Confidence 4578999988743 4889999999999999995
No 490
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.62 E-value=1.1e+02 Score=28.35 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
.+|.++..+..| ..+|..|+++||+|+++...
T Consensus 4 ~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 479999888887 56889999999999999643
No 491
>PRK08163 salicylate hydroxylase; Provisional
Probab=20.60 E-value=1.2e+02 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 9 SHPHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 9 ~~~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
++++|+|+..+--| +.+|..|+++|++|+++
T Consensus 3 ~~~~V~IvGaGiaG-----l~~A~~L~~~g~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGG-----LAAALALARQGIKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHH-----HHHHHHHHhCCCcEEEE
Confidence 35689999887644 78899999999999998
No 492
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=20.56 E-value=1.1e+02 Score=28.90 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=25.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|+|.|+..+..| ..+|..|+++||+|+++...
T Consensus 3 ~~V~VIG~G~mG-----~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIG-----RAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred cEEEEECccHHH-----HHHHHHHHHCCCeeEEEeCC
Confidence 478888877655 57889999999999998543
No 493
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=20.56 E-value=1.4e+02 Score=29.23 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=32.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcCCCCccch
Q 012061 11 PHVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTYPTVSLAE 54 (472)
Q Consensus 11 ~~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 54 (472)
.||++.-.++ +..+-...+.+.|.+.|++|.++.++.-...+.
T Consensus 4 k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 4 KKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 4777777776 445668999999999999999998875444443
No 494
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.39 E-value=4.3e+02 Score=22.26 Aligned_cols=71 Identities=24% Similarity=0.178 Sum_probs=42.7
Q ss_pred chHHHHHHhCCcEEecCC-cccchhhHHHHHhhCeeeEEeecCCCCcCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHH
Q 012061 367 NSLVEAARHGVPLLVWPH-FGDQKINAEAVERAGLGMWVRSWGWGTELRAKGDEIGLKIKDLMAND---FLREQAKRIEE 442 (472)
Q Consensus 367 ~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~ 442 (472)
-|+.|-..+|.=.+.==- .-=+..|+.+.++-|.=-.+ --+..+.++|.++..+=|.|. +++..+.++.+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI~------aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~r 161 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYVERFGFPFII------AVKGNTKDTILAAFERRLDNDREQEFATALAEIER 161 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceEE------eecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 355666666654332100 01156799999999987766 344557888888877777655 35544444444
Q ss_pred H
Q 012061 443 E 443 (472)
Q Consensus 443 ~ 443 (472)
.
T Consensus 162 I 162 (176)
T COG3195 162 I 162 (176)
T ss_pred H
Confidence 3
No 495
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=20.33 E-value=1.7e+02 Score=26.24 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=31.0
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 012061 13 VALIPS-AGMGHLTPFLRLAASLVQHHCRVTLITTYPTV 50 (472)
Q Consensus 13 il~~~~-~~~GHi~P~l~La~~L~~rGh~Vt~~~~~~~~ 50 (472)
|.+... |+-|=..-.+.||..|+++|.+|.++=..+..
T Consensus 4 I~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~ 42 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENR 42 (231)
T ss_pred EEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 444444 89999999999999999999999998665443
No 496
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=20.31 E-value=97 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=22.7
Q ss_pred cCcEEeecCcchHHHHHHh----C-----CcEEecCCcc
Q 012061 357 VGGFVSHGGWNSLVEAARH----G-----VPLLVWPHFG 386 (472)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----G-----vP~l~~P~~~ 386 (472)
.+.+|.-||-||+.|++.. . +|+.++|...
T Consensus 50 ~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 50 FDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 3569999999999998643 3 6788888643
No 497
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.27 E-value=1.5e+02 Score=25.89 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=25.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
+|+++..+..| ...++.|.+.|++||++++.
T Consensus 12 ~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 12 RVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 78888776644 67889999999999999753
No 498
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.22 E-value=2e+02 Score=20.66 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=26.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 012061 12 HVALIPSAGMGHLTPFLRLAASLVQHHCRVTLI 44 (472)
Q Consensus 12 ~il~~~~~~~GHi~P~l~La~~L~~rGh~Vt~~ 44 (472)
+|++++. ...+..-.+.+++.|++.|.+|.+-
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d 34 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVD 34 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEE
Confidence 5666665 4577888999999999999999874
No 499
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=20.18 E-value=6.4e+02 Score=23.99 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=21.0
Q ss_pred CCCcEEEEcCCCh----hhhHHHHHhcCCCeEEEe
Q 012061 109 PPLSALITDVTLI----SAVLPVTINLHLPNYVLF 139 (472)
Q Consensus 109 ~~~D~vI~D~~~~----~~~~~vA~~lgIP~v~~~ 139 (472)
.++|.||..+ .. .....-|...|||+|.+.
T Consensus 79 ~~vdgIiv~~-~d~~al~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 79 QGYNAIIVSA-VSPDGLCPALKRAMQRGVKVLTWD 112 (336)
T ss_pred cCCCEEEEec-CCHHHHHHHHHHHHHCCCeEEEeC
Confidence 4799999866 33 234455677899998774
No 500
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.18 E-value=1.7e+02 Score=26.07 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=28.7
Q ss_pred EEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEEcC
Q 012061 13 VALIPS--AGMGHLTPFLRLAASLVQHHCRVTLITTY 47 (472)
Q Consensus 13 il~~~~--~~~GHi~P~l~La~~L~~rGh~Vt~~~~~ 47 (472)
|++++. ++-|-..-.-+|+-.|+++|+.|.++-..
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 444444 68899999999999999999999998543
Done!