BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012063
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/468 (50%), Positives = 314/468 (67%), Gaps = 13/468 (2%)
Query: 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVL 66
HVA +PSPGMGHLIP VE AK+LV H ++VTF++ GPPSKA +VL LP I+ V
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVF 67
Query: 67 LPPVNFEE---DVKAEIQIVLAIKRSLSSVRDVFKSLVASTHL-MALVVDPFGTDVFDVA 122
LPPV+ + + E +I L + RS +R VF S V L ALVVD FGTD FDVA
Sbjct: 68 LPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVA 127
Query: 123 REFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVRDMEQPLKLPGFTIPIHGRDFPDPL 182
EF+VP Y+++ T A LS ++PKLDE +SCE R++ +PL LPG +P+ G+DF DP
Sbjct: 128 VEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPG-CVPVAGKDFLDPA 186
Query: 183 QDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRS--IYPIGPIIRT 240
QDRK+DAY++++ KRY A+GIL+NTF ELEP IKALQE P + +YP+GP++
Sbjct: 187 QDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE-PGLDKPPVYPVGPLVNI 245
Query: 241 VSDGELVDGSESHQCMCIRWLDNQAXXXXXXXXXXXXXTLSYDXXXXXXXXXXXXXXXFL 300
+ ++ + C++WLDNQ TL+ + FL
Sbjct: 246 GKQ----EAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFL 301
Query: 301 WVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGG 360
WV++SP A+ S+FD HS+TDP FLP GFL+RTK++G V+P WAPQ +VL HPSTGG
Sbjct: 302 WVIRSPSG-IANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGG 360
Query: 361 FLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIA 420
FLTHCGWNSTLES+V G+PLIAWPLYAEQ++NAV+LSED+ ALRP ++GL++REE+A
Sbjct: 361 FLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVA 420
Query: 421 KVIKGLMHGEDGVIIRDRMNRLKDXXXXXVSDGGSSTKTLSQLVHKWK 468
+V+KGLM GE+G +R++M LK+ + D G+STK LS + KWK
Sbjct: 421 RVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWK 468
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 145/477 (30%), Positives = 228/477 (47%), Gaps = 42/477 (8%)
Query: 11 MPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPS-----KAITSVLQGLPEHINHV 65
+P+PG+GHL +E AK L+ HD ++ V I P I SVL P+ I +
Sbjct: 15 IPAPGIGHLASALEFAK-LLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ-IQLI 72
Query: 66 LLPPVNF--EEDVKA-EIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVA 122
LP V +E +K+ E I+ ++ + V+ K+++ S ++ LV+D F + DV
Sbjct: 73 DLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-SNKVVGLVLDFFCVSMIDVG 131
Query: 123 REFYVPSYLYFLTNALSLSLLHYMP--KLDEVISCEVRDMEQPLKLPGFTIPIHGRDFPD 180
EF +PSYL+ +N LSL+ + +++EV RD Q L +PG + + PD
Sbjct: 132 NEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIPGISNQVPSNVLPD 190
Query: 181 PLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQE-EPSMRSIYPIGPIIR 239
+ K+ Y ++ +R+ GI++NTF +LE I AL + + + IY +GP++
Sbjct: 191 ACFN-KDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD 249
Query: 240 TVSDGELVDGSESHQCMCIRWLDNQAXXXXXXXXXXXX-XTLSYDXXXXXXXXXXXXXXX 298
H + ++WLD Q +
Sbjct: 250 LKGQPNPKLDQAQHD-LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVR 308
Query: 299 FLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGL-VVPSWAPQVEVLGHPS 357
FLW SA F P GFL+ + +G ++ WAPQVEVL H +
Sbjct: 309 FLW------SNSAEKKVF------------PEGFLEWMELEGKGMICGWAPQVEVLAHKA 350
Query: 358 TGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALR-PPEYENG--LI 414
GGF++HCGWNS LES+ GVP++ WP+YAEQ+LNA L ++ V L +Y G ++
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 415 KREEIAKVIKGLMHGEDGVIIRDRMNRLKDXXXXXVSDGGSSTKTLSQLVHKWKNQN 471
EEI K +K LM + I+ ++ +K+ V DGGSS ++ +L+ N
Sbjct: 411 AAEEIEKGLKDLMDKDS--IVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDITGSN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 144/470 (30%), Positives = 227/470 (48%), Gaps = 42/470 (8%)
Query: 11 MPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPS-----KAITSVLQGLPEHINHV 65
+P+PG+GHL +E AK L+ HD ++ V I P I SVL P+ I +
Sbjct: 15 IPAPGIGHLASALEFAK-LLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ-IQLI 72
Query: 66 LLPPVNF--EEDVKA-EIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVA 122
LP V +E +K+ E I+ ++ + V+ K+++ S ++ LV+D F + DV
Sbjct: 73 DLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-SNKVVGLVLDFFCVSMIDVG 131
Query: 123 REFYVPSYLYFLTNALSLSLLHYMP--KLDEVISCEVRDMEQPLKLPGFTIPIHGRDFPD 180
EF +PSYL+ +N LSL+ + +++EV RD Q L +PG + + PD
Sbjct: 132 NEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIPGISNQVPSNVLPD 190
Query: 181 PLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQE-EPSMRSIYPIGPIIR 239
+ K+ Y ++ +R+ GI++NTF +LE I AL + + + IY +GP++
Sbjct: 191 ACFN-KDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD 249
Query: 240 TVSDGELVDGSESHQCMCIRWLDNQAXXXXXXXXXXXX-XTLSYDXXXXXXXXXXXXXXX 298
H + ++WLD Q +
Sbjct: 250 LKGQPNPKLDQAQHD-LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVR 308
Query: 299 FLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGL-VVPSWAPQVEVLGHPS 357
FLW SA F P GFL+ + +G ++ WAPQVEVL H +
Sbjct: 309 FLW------SNSAEKKVF------------PEGFLEWMELEGKGMICGWAPQVEVLAHKA 350
Query: 358 TGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALR-PPEYENG--LI 414
GGF++HCGWNS LES+ GVP++ WP+YAEQ+LNA L ++ V L +Y G ++
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 415 KREEIAKVIKGLMHGEDGVIIRDRMNRLKDXXXXXVSDGGSSTKTLSQLV 464
EEI K +K LM + I+ ++ +K+ V DGGSS ++ +L+
Sbjct: 411 AAEEIEKGLKDLMDKDS--IVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 224/501 (44%), Gaps = 67/501 (13%)
Query: 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTF---------LVPTIGPPS-KA 50
A K HV +P P GH+ P +LAK L LR +TF L+ + GP +
Sbjct: 4 FANRKPHVVMIPYPVQGHINPLFKLAKLLHLR-GFHITFVNTEYNHKRLLKSRGPKAFDG 62
Query: 51 ITSV-LQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIKRS--LSSVRDVFKSLVASTHL- 106
T + +P+ L P+ + DV ++ + R L ++ L ST++
Sbjct: 63 FTDFNFESIPDG-----LTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVP 117
Query: 107 --MALVVDPFGTDVFDVAREFYVPSYLYFLTNALSL-SLLHY--------MPKLDEVI-- 153
LV D + A EF +P+ LYF ++A SL +++H+ +P DE
Sbjct: 118 PVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLT 177
Query: 154 -SCEVRDMEQPLKLPGFTIPIHGRDFPDPLQDRK-ND-AYRFMIQIRKRYSLADGILINT 210
C ++ L F + +D D ++ ND F I++ R + IL+NT
Sbjct: 178 NGCLETKVDWIPGLKNFRL----KDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNT 233
Query: 211 FMELEPGVIKALQEEPSMRSIYPIGPI---IRTVSDGELVDGSESH----QCMCIRWLDN 263
F ELE VI AL ++ SIYPIGP+ ++ +D +S+ C+ WL++
Sbjct: 234 FNELESDVINALSS--TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLES 291
Query: 264 QAXXXXXXXXXXXXXTLSYDXXXXXXXXXXXXXXXFLWVVKSPDDKSASGSFFDVHSKTD 323
+ ++ + FLW+++ PD F
Sbjct: 292 KEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFS------ 344
Query: 324 PFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW 383
+ F + ++GL+ SW PQ +VL HPS GGFLTHCGWNST ESI GVP++ W
Sbjct: 345 ------SEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCW 397
Query: 384 PLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLK 443
P +A+Q + + + + + E + +KREE+AK+I ++ G+ G ++ + LK
Sbjct: 398 PFFADQPTDCRFICNEWEIGM---EIDTN-VKREELAKLINEVIAGDKGKKMKQKAMELK 453
Query: 444 DXXXXXVSDGGSSTKTLSQLV 464
GG S L++++
Sbjct: 454 KKAEENTRPGGCSYMNLNKVI 474
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 170/389 (43%), Gaps = 35/389 (8%)
Query: 82 IVLAIKRSLSSVRDVFKSLVAST--HLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALS 139
I L IK + + V VA T ++ LV D F D+A E + + S
Sbjct: 92 IFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHS 151
Query: 140 LSLLHYMPKL--DEVISCEVRDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMI-QI 196
L L H L ++ S EV D++ LPGF + D P+ + + + M+ ++
Sbjct: 152 L-LTHVYTDLIREKTGSKEVHDVKSIDVLPGFP-ELKASDLPEGVIKDIDVPFATMLHKM 209
Query: 197 RKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPIIRTVSDGELVDGSESHQCM 256
A+ + IN+F + P + L + + + +GP T ++ D +
Sbjct: 210 GLELPRANAVAINSFATIHPLIENELNSK--FKLLLNVGPFNLTTPQRKVSD-----EHG 262
Query: 257 CIRWLDNQAXXXXXXXXXXXXXTLSYDXXXXXXXXXXXXXXXFLWVVKSPDDKSASGSFF 316
C+ WLD T F+W SF
Sbjct: 263 CLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIW------------SF- 309
Query: 317 DVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVH 376
+ DP LP GFL+RTK +G +V +WAPQVE+L H S G FLTH GWNS LE IV
Sbjct: 310 ----RGDPKEKLPKGFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVG 364
Query: 377 GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIR 436
GVP+I+ P + +Q LN ++ L + + +NG++ +E I K ++ M E G I+R
Sbjct: 365 GVPMISRPFFGDQGLNTILTESVLEIGVG---VDNGVLTKESIKKALELTMSSEKGGIMR 421
Query: 437 DRMNRLKDXXXXXVSDGGSSTKTLSQLVH 465
++ +LK+ V G+S + L+
Sbjct: 422 QKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 175/398 (43%), Gaps = 39/398 (9%)
Query: 82 IVLAIKRSLSSVRDVFKSLVASTH--LMALVVDPFGTDVFDVAREFYVPSYLYFLTNALS 139
I L + + S R VA T + LV D F D+A E V ++ S
Sbjct: 87 IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNS 146
Query: 140 LSLLHYMPKLDEVISC---EVRDMEQPLKLPGFTIPIHGRDFPDPL--QDRKNDAYRFMI 194
LS Y+ ++ E I + R+ E +PG + + RD + + + + R +
Sbjct: 147 LSTHVYIDEIREKIGVSGIQGREDELLNFIPGMS-KVRFRDLQEGIVFGNLNSLFSRMLH 205
Query: 195 QIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPIIRTVSDGELVDGSESHQ 254
++ + A + IN+F EL+ + L+ + +++ IGP ++ +V +
Sbjct: 206 RMGQVLPKATAVFINSFEELDDSLTNDLKSK--LKTYLNIGPF-NLITPPPVVPNTTG-- 260
Query: 255 CMCIRWLDNQAXXXXXXXXXXXXXTLSYDXXXXXXXXXXXXXXXFLWVVKSPDDKSASGS 314
C++WL + T F+W ++ DK+
Sbjct: 261 --CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR---DKA---- 311
Query: 315 FFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESI 374
VH LP GFL++T+ G+VVP WAPQ EVL H + G F+THCGWNS ES+
Sbjct: 312 --RVH--------LPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESV 360
Query: 375 VHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVI 434
GVPLI P + +QRLN ++ + L + +R E G+ + + ++ E G
Sbjct: 361 AGGVPLICRPFFGDQRLNGRMVEDVLEIGVR---IEGGVFTKSGLMSCFDQILSQEKGKK 417
Query: 435 IRDRMNRLKDXXXXXVSDGGSSTK---TLSQLVHKWKN 469
+R+ + L++ V GSST+ TL LV K K+
Sbjct: 418 LRENLRALRETADRAVGPKGSSTENFITLVDLVSKPKD 455
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 346 WAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQ 389
W PQ ++LGHP T F+TH G N E+I HG+P + PL+A+Q
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 343 VPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNA 393
V W PQ+++L S F+TH G ST+E++ + VP++A P AEQ +NA
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 343 VPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNV 402
V W PQ+ +L F+TH G + E + P+IA P +Q NA +L + L V
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGV 343
Query: 403 ALR 405
A +
Sbjct: 344 ARK 346
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 346 WAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAV--ILSEDLNVA 403
W P VL H LTH + LE+ GVPL+ P +A + + ++ L
Sbjct: 288 WIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 404 LRPPEYENGLIKREEIAKV 422
LRP + E I RE + ++
Sbjct: 346 LRPDQLEPASI-REAVERL 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,373,804
Number of Sequences: 62578
Number of extensions: 532874
Number of successful extensions: 1082
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 18
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)