Query 012063
Match_columns 471
No_of_seqs 166 out of 1430
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 1.7E-72 3.7E-77 553.0 44.0 454 1-469 1-469 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 8.6E-72 1.9E-76 544.7 42.9 451 5-469 3-468 (470)
3 PLN02173 UDP-glucosyl transfer 100.0 2.2E-71 4.8E-76 542.3 44.1 430 1-468 1-447 (449)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 5.6E-71 1.2E-75 542.2 45.0 440 1-469 1-450 (451)
5 PLN00164 glucosyltransferase; 100.0 1E-70 2.3E-75 545.9 44.2 454 4-470 2-474 (480)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.5E-70 3.3E-75 542.8 43.0 447 4-470 8-472 (477)
7 PLN03004 UDP-glycosyltransfera 100.0 1.5E-70 3.3E-75 536.8 39.8 436 5-458 3-450 (451)
8 PLN02207 UDP-glycosyltransfera 100.0 1.6E-69 3.5E-74 531.0 44.3 445 5-470 3-466 (468)
9 PLN02555 limonoid glucosyltran 100.0 1.9E-69 4.1E-74 533.0 44.8 449 1-469 1-469 (480)
10 PLN02210 UDP-glucosyl transfer 100.0 1.7E-69 3.8E-74 533.8 43.5 435 3-468 6-454 (456)
11 PLN02764 glycosyltransferase f 100.0 2.3E-69 5E-74 526.2 43.1 430 1-470 1-446 (453)
12 PLN02554 UDP-glycosyltransfera 100.0 2.6E-69 5.6E-74 538.2 43.5 450 5-470 2-479 (481)
13 PLN02562 UDP-glycosyltransfera 100.0 1.2E-68 2.6E-73 527.4 43.7 434 1-468 1-448 (448)
14 PLN02208 glycosyltransferase f 100.0 1E-68 2.2E-73 524.8 42.8 425 4-470 3-440 (442)
15 PLN02152 indole-3-acetate beta 100.0 1.1E-68 2.4E-73 524.1 42.9 438 5-468 3-455 (455)
16 PLN02534 UDP-glycosyltransfera 100.0 1.2E-68 2.6E-73 527.9 43.1 448 4-470 7-487 (491)
17 PLN02670 transferase, transfer 100.0 7.3E-69 1.6E-73 527.0 41.3 447 1-470 1-466 (472)
18 PLN03007 UDP-glucosyltransfera 100.0 2.1E-68 4.5E-73 532.5 43.8 450 1-470 1-481 (482)
19 PLN02167 UDP-glycosyltransfera 100.0 5.5E-68 1.2E-72 527.9 42.0 445 4-469 2-472 (475)
20 PLN00414 glycosyltransferase f 100.0 2.1E-67 4.5E-72 516.2 41.1 425 4-470 3-441 (446)
21 PLN02448 UDP-glycosyltransfera 100.0 2.6E-66 5.6E-71 514.9 42.6 436 3-469 8-457 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 4.2E-48 9.1E-53 386.9 35.9 373 7-448 22-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.9E-49 4.2E-54 403.8 9.5 370 7-448 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.4E-42 3.1E-47 342.4 31.4 372 11-465 1-388 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.5E-42 5.5E-47 342.3 25.7 357 6-448 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 4.3E-42 9.3E-47 350.0 23.4 391 5-447 5-437 (496)
27 COG1819 Glycosyl transferases, 100.0 1.8E-39 3.9E-44 316.4 25.1 380 5-466 1-397 (406)
28 PRK12446 undecaprenyldiphospho 99.9 9.3E-25 2E-29 210.4 26.9 323 7-441 3-335 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 9E-22 1.9E-26 187.3 28.9 324 6-442 1-338 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 1.9E-22 4.1E-27 193.6 24.5 305 6-426 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 6E-20 1.3E-24 175.9 25.7 81 340-429 230-314 (321)
32 PRK00726 murG undecaprenyldiph 99.8 6.6E-18 1.4E-22 164.8 28.1 342 6-468 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1E-16 2.2E-21 156.1 27.4 318 7-438 1-330 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 1.9E-15 4.1E-20 148.0 22.6 109 349-464 261-383 (385)
35 TIGR01133 murG undecaprenyldip 99.7 1.4E-14 3E-19 140.9 27.0 83 348-439 243-328 (348)
36 COG4671 Predicted glycosyl tra 99.7 3.6E-14 7.8E-19 128.9 24.0 331 5-428 9-364 (400)
37 PRK13609 diacylglycerol glucos 99.7 2.2E-14 4.7E-19 141.3 23.9 165 266-468 201-370 (380)
38 TIGR03590 PseG pseudaminic aci 99.6 2.5E-13 5.4E-18 126.9 19.7 104 268-395 171-278 (279)
39 PF04101 Glyco_tran_28_C: Glyc 99.6 3.6E-16 7.9E-21 135.0 -0.1 134 269-429 1-144 (167)
40 PRK13608 diacylglycerol glucos 99.6 2.3E-12 5.1E-17 126.9 26.4 164 266-467 201-369 (391)
41 PRK00025 lpxB lipid-A-disaccha 99.6 6.6E-13 1.4E-17 130.8 22.0 108 350-468 256-376 (380)
42 PLN02605 monogalactosyldiacylg 99.5 6.4E-11 1.4E-15 116.5 28.0 81 339-429 265-347 (382)
43 TIGR03492 conserved hypothetic 99.4 9.2E-11 2E-15 115.1 22.6 107 341-464 281-393 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 1.4E-11 2.9E-16 103.0 8.1 120 8-136 1-131 (139)
45 cd03814 GT1_like_2 This family 99.2 1.2E-08 2.6E-13 99.3 25.6 111 338-467 246-363 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.1 1E-07 2.2E-12 96.5 30.4 127 269-429 264-400 (465)
47 cd03794 GT1_wbuB_like This fam 99.1 1.8E-07 3.9E-12 91.7 29.6 81 337-429 273-365 (394)
48 cd03818 GT1_ExpC_like This fam 99.1 8.7E-07 1.9E-11 87.8 33.8 82 338-429 280-366 (396)
49 cd03823 GT1_ExpE7_like This fa 99.1 3.3E-07 7.2E-12 88.9 30.0 80 338-429 242-329 (359)
50 cd03800 GT1_Sucrose_synthase T 99.1 4.9E-07 1.1E-11 89.5 31.1 79 339-429 283-368 (398)
51 PRK10307 putative glycosyl tra 99.0 8.6E-07 1.9E-11 88.3 31.3 115 339-469 284-407 (412)
52 cd03817 GT1_UGDG_like This fam 99.0 9.1E-07 2E-11 86.2 29.9 79 338-429 258-343 (374)
53 COG3980 spsG Spore coat polysa 99.0 9.7E-08 2.1E-12 84.9 19.2 146 267-444 158-305 (318)
54 PRK05749 3-deoxy-D-manno-octul 98.9 1.5E-06 3.3E-11 86.9 29.2 101 350-465 314-419 (425)
55 cd03816 GT1_ALG1_like This fam 98.9 1.5E-06 3.2E-11 86.6 28.6 91 339-443 294-399 (415)
56 cd03801 GT1_YqgM_like This fam 98.9 1E-05 2.2E-10 78.2 33.2 81 337-429 254-341 (374)
57 TIGR00236 wecB UDP-N-acetylglu 98.9 3E-07 6.5E-12 90.0 22.3 106 339-465 255-363 (365)
58 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 1.2E-07 2.7E-12 92.7 18.1 131 266-429 197-337 (363)
59 cd03808 GT1_cap1E_like This fa 98.9 9.9E-06 2.2E-10 78.2 31.0 80 338-429 245-329 (359)
60 cd04962 GT1_like_5 This family 98.9 6.4E-06 1.4E-10 80.7 29.9 112 339-468 253-369 (371)
61 cd03825 GT1_wcfI_like This fam 98.8 6.7E-06 1.4E-10 80.2 29.4 113 339-469 244-364 (365)
62 cd03820 GT1_amsD_like This fam 98.8 6.3E-06 1.4E-10 79.2 28.0 90 339-443 235-330 (348)
63 cd03798 GT1_wlbH_like This fam 98.8 1.8E-05 4E-10 76.7 31.0 82 338-429 258-344 (377)
64 cd03795 GT1_like_4 This family 98.8 2.6E-06 5.6E-11 82.8 24.6 130 268-429 191-332 (357)
65 TIGR03449 mycothiol_MshA UDP-N 98.8 4.5E-05 9.7E-10 75.8 33.3 79 339-429 283-368 (405)
66 cd03821 GT1_Bme6_like This fam 98.7 2.9E-05 6.4E-10 75.4 30.0 80 338-429 261-345 (375)
67 TIGR02472 sucr_P_syn_N sucrose 98.7 4.4E-05 9.5E-10 76.7 30.5 111 339-465 317-436 (439)
68 PRK14089 ipid-A-disaccharide s 98.7 3.3E-07 7.1E-12 87.6 14.3 101 349-463 229-344 (347)
69 cd05844 GT1_like_7 Glycosyltra 98.7 1.9E-05 4.1E-10 77.3 26.7 80 338-429 244-336 (367)
70 cd03805 GT1_ALG2_like This fam 98.7 7.2E-05 1.6E-09 73.9 30.9 80 338-430 279-365 (392)
71 PF04007 DUF354: Protein of un 98.7 3.1E-05 6.7E-10 73.5 26.3 103 16-135 10-112 (335)
72 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00016 3.4E-09 77.7 33.6 113 339-468 548-669 (1050)
73 cd03799 GT1_amsK_like This is 98.6 4.5E-05 9.9E-10 74.0 28.1 80 338-429 235-327 (355)
74 cd03796 GT1_PIG-A_like This fa 98.6 7E-05 1.5E-09 74.3 28.5 77 339-429 250-333 (398)
75 cd03822 GT1_ecORF704_like This 98.5 0.00016 3.4E-09 70.3 28.1 78 339-429 247-334 (366)
76 cd03811 GT1_WabH_like This fam 98.5 5.2E-05 1.1E-09 72.8 23.9 79 339-429 246-332 (353)
77 TIGR03087 stp1 sugar transfera 98.5 4.6E-05 1E-09 75.5 23.8 110 337-466 278-393 (397)
78 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 7.3E-06 1.6E-10 79.8 17.1 130 267-428 201-338 (365)
79 cd03819 GT1_WavL_like This fam 98.5 0.0002 4.3E-09 69.5 27.4 80 339-428 246-329 (355)
80 cd04955 GT1_like_6 This family 98.5 0.00067 1.4E-08 66.0 30.8 106 338-465 247-360 (363)
81 cd03807 GT1_WbnK_like This fam 98.5 0.00099 2.1E-08 64.4 31.8 77 339-429 251-332 (365)
82 PRK09922 UDP-D-galactose:(gluc 98.5 0.0001 2.2E-09 72.0 24.6 131 269-431 181-326 (359)
83 PF02350 Epimerase_2: UDP-N-ac 98.4 8.8E-06 1.9E-10 78.4 15.3 140 265-441 178-327 (346)
84 cd03809 GT1_mtfB_like This fam 98.3 0.00017 3.7E-09 70.0 23.4 107 337-464 251-364 (365)
85 cd03802 GT1_AviGT4_like This f 98.3 0.0003 6.5E-09 67.7 24.4 129 269-429 172-308 (335)
86 cd04951 GT1_WbdM_like This fam 98.3 0.0001 2.2E-09 71.6 21.3 107 339-465 245-356 (360)
87 cd03812 GT1_CapH_like This fam 98.3 0.00058 1.2E-08 66.4 25.7 85 339-439 249-338 (358)
88 PLN02275 transferase, transfer 98.3 0.003 6.6E-08 61.9 30.2 75 339-427 286-371 (371)
89 PRK01021 lpxB lipid-A-disaccha 98.3 0.00071 1.5E-08 68.4 25.5 200 210-446 367-589 (608)
90 COG1519 KdtA 3-deoxy-D-manno-o 98.2 0.0005 1.1E-08 65.8 22.5 67 361-439 327-393 (419)
91 COG0381 WecB UDP-N-acetylgluco 98.2 9.1E-05 2E-09 70.1 17.4 106 340-466 263-371 (383)
92 TIGR02149 glgA_Coryne glycogen 98.2 0.0029 6.3E-08 62.4 29.0 117 340-469 261-386 (388)
93 PF02684 LpxB: Lipid-A-disacch 98.2 0.00016 3.6E-09 69.6 18.5 104 348-458 253-366 (373)
94 KOG3349 Predicted glycosyltran 98.1 2.3E-05 5E-10 63.0 8.2 114 269-405 5-131 (170)
95 PLN02949 transferase, transfer 98.0 0.007 1.5E-07 60.9 26.8 80 338-429 334-422 (463)
96 PLN00142 sucrose synthase 98.0 0.0049 1.1E-07 65.1 25.9 58 360-427 669-730 (815)
97 TIGR02470 sucr_synth sucrose s 98.0 0.037 8.1E-07 58.5 33.8 79 339-427 619-707 (784)
98 PRK15179 Vi polysaccharide bio 97.8 0.059 1.3E-06 56.7 30.8 111 338-465 573-689 (694)
99 PLN02846 digalactosyldiacylgly 97.8 0.032 7E-07 55.7 27.2 73 342-429 287-363 (462)
100 cd04946 GT1_AmsK_like This fam 97.8 0.00058 1.3E-08 67.8 15.2 112 338-464 288-406 (407)
101 cd04950 GT1_like_1 Glycosyltra 97.8 0.043 9.3E-07 53.8 28.7 110 338-470 253-372 (373)
102 COG5017 Uncharacterized conser 97.8 0.00022 4.8E-09 56.3 9.0 108 270-408 2-123 (161)
103 COG0763 LpxB Lipid A disacchar 97.8 0.0023 5.1E-08 60.6 17.3 220 210-467 142-379 (381)
104 PRK00654 glgA glycogen synthas 97.7 0.017 3.7E-07 58.5 23.7 81 340-428 338-427 (466)
105 PRK15427 colanic acid biosynth 97.6 0.0017 3.8E-08 64.4 15.1 114 338-469 278-405 (406)
106 PRK10125 putative glycosyl tra 97.6 0.066 1.4E-06 53.1 25.8 60 351-423 302-365 (405)
107 cd03791 GT1_Glycogen_synthase_ 97.6 0.028 6.2E-07 57.1 23.7 115 339-467 351-474 (476)
108 cd03804 GT1_wbaZ_like This fam 97.6 0.00051 1.1E-08 66.8 10.4 127 270-430 197-327 (351)
109 cd03792 GT1_Trehalose_phosphor 97.6 0.098 2.1E-06 51.2 28.3 111 339-469 252-371 (372)
110 cd03806 GT1_ALG11_like This fa 97.5 0.024 5.3E-07 56.5 22.2 79 338-430 304-393 (419)
111 PRK15484 lipopolysaccharide 1, 97.5 0.0075 1.6E-07 59.4 18.0 113 338-468 256-376 (380)
112 PF13844 Glyco_transf_41: Glyc 97.4 0.004 8.7E-08 61.5 13.5 136 266-429 283-430 (468)
113 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0011 2.5E-08 54.4 7.1 80 338-429 52-135 (135)
114 PF00534 Glycos_transf_1: Glyc 97.2 0.0024 5.1E-08 55.0 9.3 80 338-429 72-158 (172)
115 TIGR03088 stp2 sugar transfera 97.2 0.0088 1.9E-07 58.6 14.4 111 340-468 256-371 (374)
116 PLN02316 synthase/transferase 97.2 0.56 1.2E-05 51.4 30.8 114 340-465 901-1029(1036)
117 PRK09814 beta-1,6-galactofuran 97.1 0.0032 7E-08 60.7 9.6 111 339-466 207-332 (333)
118 cd04949 GT1_gtfA_like This fam 97.0 0.0068 1.5E-07 59.4 11.2 95 339-442 261-359 (372)
119 PLN02501 digalactosyldiacylgly 96.8 0.25 5.4E-06 51.3 20.5 76 340-430 602-682 (794)
120 cd01635 Glycosyltransferase_GT 96.6 0.22 4.8E-06 44.3 17.6 49 339-389 161-217 (229)
121 TIGR02918 accessory Sec system 96.6 0.028 6E-07 57.2 12.6 98 338-441 375-479 (500)
122 cd03813 GT1_like_3 This family 96.6 0.096 2.1E-06 53.2 16.6 86 338-438 353-448 (475)
123 PF06722 DUF1205: Protein of u 96.6 0.0029 6.2E-08 48.3 3.9 54 254-307 27-85 (97)
124 PRK10017 colanic acid biosynth 96.1 0.14 3E-06 50.9 13.9 101 350-468 322-423 (426)
125 PRK15490 Vi polysaccharide bio 96.0 0.17 3.6E-06 51.4 13.6 115 338-470 454-576 (578)
126 KOG4626 O-linked N-acetylgluco 95.7 0.097 2.1E-06 52.5 10.6 137 266-429 757-904 (966)
127 PF13579 Glyco_trans_4_4: Glyc 95.2 0.051 1.1E-06 45.5 6.1 96 21-133 6-103 (160)
128 PHA01633 putative glycosyl tra 95.2 0.62 1.3E-05 44.6 13.9 83 340-429 202-307 (335)
129 TIGR02095 glgA glycogen/starch 95.0 0.48 1E-05 48.2 13.4 113 339-468 346-471 (473)
130 PRK10422 lipopolysaccharide co 94.9 3.8 8.2E-05 39.8 18.9 111 1-131 1-113 (352)
131 PHA01630 putative group 1 glyc 94.7 0.86 1.9E-05 43.8 13.7 111 346-468 197-329 (331)
132 COG3914 Spy Predicted O-linked 94.5 0.81 1.7E-05 46.0 12.9 133 265-424 427-573 (620)
133 PRK14098 glycogen synthase; Pr 94.5 0.65 1.4E-05 47.3 12.9 82 338-427 361-449 (489)
134 PF12000 Glyco_trans_4_3: Gkyc 93.1 1.5 3.3E-05 37.3 10.7 91 33-134 2-96 (171)
135 PF13524 Glyco_trans_1_2: Glyc 93.1 0.93 2E-05 34.1 8.7 81 364-464 9-91 (92)
136 PF13477 Glyco_trans_4_2: Glyc 92.7 1.3 2.8E-05 36.2 9.7 99 8-131 2-104 (139)
137 TIGR02400 trehalose_OtsA alpha 92.2 1.4 3.1E-05 44.4 10.9 104 344-468 341-455 (456)
138 COG1817 Uncharacterized protei 91.5 12 0.00026 35.0 19.0 108 13-136 7-114 (346)
139 PF08660 Alg14: Oligosaccharid 90.7 4.3 9.2E-05 34.7 10.8 116 11-132 3-127 (170)
140 COG4370 Uncharacterized protei 90.5 0.66 1.4E-05 42.6 5.8 105 344-464 300-408 (412)
141 TIGR02201 heptsyl_trn_III lipo 89.6 14 0.0003 35.7 14.8 108 7-133 1-110 (344)
142 TIGR03713 acc_sec_asp1 accesso 89.3 1 2.3E-05 46.0 7.0 88 340-444 410-504 (519)
143 PF01975 SurE: Survival protei 89.3 3.9 8.5E-05 35.8 9.6 40 6-47 1-40 (196)
144 cd03788 GT1_TPS Trehalose-6-Ph 88.0 2.2 4.8E-05 43.1 8.4 104 343-467 345-459 (460)
145 TIGR02193 heptsyl_trn_I lipopo 88.0 2 4.3E-05 41.0 7.7 133 267-427 179-319 (319)
146 PF13439 Glyco_transf_4: Glyco 86.6 9.4 0.0002 32.0 10.5 32 14-46 10-41 (177)
147 PLN02939 transferase, transfer 86.5 9.4 0.0002 41.7 12.1 83 339-428 837-930 (977)
148 PRK14099 glycogen synthase; Pr 85.8 13 0.00027 38.0 12.4 81 342-429 354-447 (485)
149 TIGR02919 accessory Sec system 85.3 16 0.00035 36.6 12.5 91 339-444 328-424 (438)
150 cd03789 GT1_LPS_heptosyltransf 84.5 34 0.00074 31.7 18.7 39 7-45 1-40 (279)
151 PF06258 Mito_fiss_Elm1: Mitoc 84.3 10 0.00023 36.0 10.3 59 348-409 221-283 (311)
152 COG0003 ArsA Predicted ATPase 84.0 5.3 0.00011 38.0 8.1 38 5-43 1-39 (322)
153 COG0438 RfaG Glycosyltransfera 81.6 45 0.00098 31.0 16.3 79 339-429 257-342 (381)
154 PLN03063 alpha,alpha-trehalose 81.3 6.5 0.00014 42.7 8.5 97 351-468 371-476 (797)
155 PF02374 ArsA_ATPase: Anion-tr 81.2 1.3 2.8E-05 42.0 2.9 39 6-45 1-40 (305)
156 PRK06321 replicative DNA helic 81.1 11 0.00023 38.2 9.5 37 8-44 229-265 (472)
157 PRK05595 replicative DNA helic 80.3 6.4 0.00014 39.6 7.7 37 8-44 204-240 (444)
158 PRK05748 replicative DNA helic 79.1 16 0.00034 36.9 10.0 38 8-45 206-243 (448)
159 COG1618 Predicted nucleotide k 78.2 17 0.00037 30.6 8.0 42 1-43 1-42 (179)
160 TIGR00665 DnaB replicative DNA 78.1 15 0.00033 36.7 9.7 39 8-46 198-236 (434)
161 COG0496 SurE Predicted acid ph 78.1 7.4 0.00016 35.3 6.5 24 22-47 16-39 (252)
162 PRK08760 replicative DNA helic 78.0 10 0.00023 38.4 8.3 37 8-44 232-268 (476)
163 cd03793 GT1_Glycogen_synthase_ 76.0 8.9 0.00019 39.4 7.1 77 349-429 468-552 (590)
164 cd00984 DnaB_C DnaB helicase C 75.4 23 0.00049 32.1 9.3 39 8-46 16-54 (242)
165 PRK05636 replicative DNA helic 74.2 10 0.00022 38.8 7.1 37 8-44 268-304 (505)
166 COG1703 ArgK Putative periplas 73.9 57 0.0012 30.6 11.0 112 5-131 51-171 (323)
167 TIGR02195 heptsyl_trn_II lipop 73.9 85 0.0018 30.0 19.3 103 7-131 1-105 (334)
168 TIGR02398 gluc_glyc_Psyn gluco 73.5 65 0.0014 32.8 12.5 110 341-470 364-483 (487)
169 cd00550 ArsA_ATPase Oxyanion-t 73.2 25 0.00055 32.2 9.0 36 8-44 3-38 (254)
170 PRK08006 replicative DNA helic 72.8 19 0.00042 36.4 8.7 36 8-43 227-262 (471)
171 PRK07773 replicative DNA helic 72.8 21 0.00046 39.4 9.7 37 8-44 220-256 (886)
172 COG2109 BtuR ATP:corrinoid ade 72.5 58 0.0012 28.3 10.0 106 5-116 28-133 (198)
173 cd00561 CobA_CobO_BtuR ATP:cor 71.7 61 0.0013 27.3 11.0 101 6-116 3-106 (159)
174 TIGR03600 phage_DnaB phage rep 71.3 23 0.00051 35.3 8.9 37 8-44 197-233 (421)
175 PRK08506 replicative DNA helic 70.8 30 0.00064 35.1 9.5 36 8-44 195-230 (472)
176 PRK05986 cob(I)alamin adenolsy 69.8 75 0.0016 27.7 11.5 104 5-116 22-126 (191)
177 PF05159 Capsule_synth: Capsul 69.6 32 0.00068 31.8 8.9 41 341-384 185-225 (269)
178 PRK06904 replicative DNA helic 68.3 38 0.00082 34.4 9.6 36 8-43 224-259 (472)
179 PF04464 Glyphos_transf: CDP-G 68.2 6.7 0.00014 38.3 4.3 113 340-464 253-368 (369)
180 PRK08840 replicative DNA helic 67.2 36 0.00077 34.4 9.2 36 8-43 220-255 (464)
181 PRK06718 precorrin-2 dehydroge 66.3 29 0.00063 30.6 7.5 101 340-448 55-164 (202)
182 PRK09165 replicative DNA helic 66.0 30 0.00065 35.3 8.5 39 8-46 220-272 (497)
183 PRK02261 methylaspartate mutas 65.6 13 0.00029 30.4 4.8 39 4-43 2-40 (137)
184 PF01075 Glyco_transf_9: Glyco 65.1 9.5 0.00021 34.7 4.4 99 266-383 104-208 (247)
185 PRK13935 stationary phase surv 64.5 32 0.00069 31.5 7.4 24 22-47 16-39 (253)
186 PRK10964 ADP-heptose:LPS hepto 64.1 13 0.00029 35.4 5.4 38 6-43 1-39 (322)
187 PRK14501 putative bifunctional 63.9 24 0.00052 38.1 7.7 111 342-469 345-462 (726)
188 cd07039 TPP_PYR_POX Pyrimidine 62.4 65 0.0014 27.3 8.7 27 359-385 65-97 (164)
189 TIGR00087 surE 5'/3'-nucleotid 62.3 38 0.00082 30.9 7.5 24 22-47 16-39 (244)
190 PRK13933 stationary phase surv 62.2 41 0.0009 30.8 7.8 24 22-47 16-39 (253)
191 PRK07004 replicative DNA helic 61.6 46 0.001 33.6 8.8 37 8-44 216-252 (460)
192 cd02067 B12-binding B12 bindin 60.6 13 0.00027 29.5 3.8 35 7-42 1-35 (119)
193 PF02951 GSH-S_N: Prokaryotic 59.9 17 0.00037 28.9 4.3 37 6-43 1-40 (119)
194 TIGR00725 conserved hypothetic 59.4 27 0.00059 29.4 5.8 39 347-385 82-123 (159)
195 PRK05973 replicative DNA helic 58.7 24 0.00051 32.0 5.6 39 7-46 66-104 (237)
196 PRK06249 2-dehydropantoate 2-r 58.5 14 0.0003 35.2 4.3 37 1-43 1-37 (313)
197 COG2894 MinD Septum formation 58.0 56 0.0012 29.2 7.4 39 7-46 3-43 (272)
198 PF07302 AroM: AroM protein; 58.0 72 0.0016 28.5 8.3 30 103-132 176-208 (221)
199 COG0801 FolK 7,8-dihydro-6-hyd 57.9 21 0.00046 30.0 4.7 35 269-303 3-37 (160)
200 PHA02542 41 41 helicase; Provi 57.8 27 0.00059 35.4 6.4 36 8-44 193-228 (473)
201 PRK13931 stationary phase surv 57.3 1.2E+02 0.0025 28.0 9.9 26 22-47 16-43 (261)
202 PRK10916 ADP-heptose:LPS hepto 57.1 1.4E+02 0.0031 28.6 11.3 104 6-131 1-106 (348)
203 PRK13932 stationary phase surv 56.5 95 0.0021 28.5 9.1 40 4-47 4-44 (257)
204 PRK04885 ppnK inorganic polyph 54.8 19 0.00041 33.3 4.4 53 355-429 35-93 (265)
205 cd01122 GP4d_helicase GP4d_hel 54.6 51 0.0011 30.4 7.4 38 7-44 32-69 (271)
206 PF06564 YhjQ: YhjQ protein; 54.0 1.7E+02 0.0038 26.6 12.4 103 7-115 3-127 (243)
207 PRK06749 replicative DNA helic 53.9 1E+02 0.0023 30.8 9.7 36 8-44 189-224 (428)
208 TIGR01470 cysG_Nterm siroheme 53.8 1E+02 0.0022 27.2 8.7 95 350-449 64-165 (205)
209 PF07355 GRDB: Glycine/sarcosi 52.9 32 0.00069 32.9 5.5 35 100-134 75-119 (349)
210 KOG0853 Glycosyltransferase [C 52.2 12 0.00027 37.5 2.8 67 363-441 376-442 (495)
211 PF00731 AIRC: AIR carboxylase 52.1 1.4E+02 0.003 24.9 9.2 139 269-448 2-148 (150)
212 PRK14077 pnk inorganic polypho 52.0 26 0.00056 32.8 4.9 54 354-429 63-120 (287)
213 PRK02155 ppnK NAD(+)/NADH kina 51.8 27 0.00058 32.8 4.9 54 354-429 62-119 (291)
214 PRK00346 surE 5'(3')-nucleotid 51.5 1.1E+02 0.0024 28.0 8.7 24 22-47 16-39 (250)
215 PRK12342 hypothetical protein; 50.1 26 0.00057 32.1 4.5 31 105-135 109-145 (254)
216 COG3195 Uncharacterized protei 50.1 60 0.0013 27.3 6.0 77 367-447 87-164 (176)
217 PF02310 B12-binding: B12 bind 49.9 33 0.00073 26.9 4.7 36 6-42 1-36 (121)
218 PRK13934 stationary phase surv 49.9 1.9E+02 0.0041 26.8 9.8 26 20-47 14-39 (266)
219 PRK03359 putative electron tra 49.6 32 0.00068 31.6 4.9 31 105-135 112-148 (256)
220 PRK11519 tyrosine kinase; Prov 49.3 3.7E+02 0.0081 29.0 13.9 38 5-43 525-564 (719)
221 PLN03064 alpha,alpha-trehalose 49.3 1.8E+02 0.0038 32.4 11.1 103 347-469 448-561 (934)
222 PLN02929 NADH kinase 48.6 18 0.00038 34.1 3.2 65 355-429 64-137 (301)
223 PF04127 DFP: DNA / pantothena 48.3 33 0.00071 29.8 4.6 37 7-44 5-53 (185)
224 PF06925 MGDG_synth: Monogalac 48.0 57 0.0012 27.7 6.1 23 18-40 1-25 (169)
225 PRK10916 ADP-heptose:LPS hepto 47.9 50 0.0011 31.8 6.4 97 266-383 179-286 (348)
226 PRK01911 ppnK inorganic polyph 46.7 35 0.00077 32.0 4.9 57 351-429 60-120 (292)
227 PF04413 Glycos_transf_N: 3-De 46.6 1.5E+02 0.0033 25.6 8.6 102 7-134 22-126 (186)
228 PRK01231 ppnK inorganic polyph 46.3 1.2E+02 0.0025 28.6 8.3 53 355-429 62-118 (295)
229 PF02606 LpxK: Tetraacyldisacc 46.1 80 0.0017 30.3 7.2 38 8-46 40-77 (326)
230 PF02441 Flavoprotein: Flavopr 45.9 32 0.00069 27.7 4.0 36 6-43 1-36 (129)
231 cd07035 TPP_PYR_POX_like Pyrim 45.8 1.2E+02 0.0025 25.1 7.6 26 360-385 62-93 (155)
232 PRK14098 glycogen synthase; Pr 45.7 34 0.00074 34.9 5.0 43 1-44 1-49 (489)
233 PF00551 Formyl_trans_N: Formy 45.6 1.4E+02 0.0031 25.6 8.2 34 6-43 1-36 (181)
234 KOG4117 Heat shock factor bind 45.1 99 0.0021 21.2 6.6 52 414-470 12-63 (73)
235 PF12146 Hydrolase_4: Putative 45.0 45 0.00097 24.2 4.2 35 6-41 16-50 (79)
236 PRK03378 ppnK inorganic polyph 44.8 38 0.00083 31.8 4.8 55 353-429 61-119 (292)
237 PF00448 SRP54: SRP54-type pro 44.6 1.6E+02 0.0034 25.8 8.4 58 7-67 3-62 (196)
238 PRK02649 ppnK inorganic polyph 44.4 39 0.00085 32.0 4.8 53 355-429 68-124 (305)
239 PRK11889 flhF flagellar biosyn 44.2 1.7E+02 0.0036 29.1 9.0 40 6-46 242-281 (436)
240 PRK02797 4-alpha-L-fucosyltran 43.9 49 0.0011 31.2 5.2 80 340-427 207-292 (322)
241 COG0859 RfaF ADP-heptose:LPS h 43.7 60 0.0013 31.2 6.2 96 267-383 175-276 (334)
242 PRK01077 cobyrinic acid a,c-di 43.3 3E+02 0.0065 27.8 11.2 35 7-42 5-40 (451)
243 TIGR01918 various_sel_PB selen 43.1 52 0.0011 32.4 5.4 46 360-407 347-394 (431)
244 TIGR01917 gly_red_sel_B glycin 43.1 51 0.0011 32.4 5.4 27 360-386 347-373 (431)
245 COG2327 WcaK Polysaccharide py 43.0 1.4E+02 0.003 29.2 8.3 77 350-438 280-357 (385)
246 PLN02470 acetolactate synthase 42.7 49 0.0011 34.7 5.8 28 357-384 76-109 (585)
247 PF02572 CobA_CobO_BtuR: ATP:c 42.6 2.2E+02 0.0047 24.4 10.4 102 5-114 3-105 (172)
248 cd01124 KaiC KaiC is a circadi 42.6 1.9E+02 0.0041 24.5 8.7 38 8-46 2-39 (187)
249 TIGR00959 ffh signal recogniti 42.6 1.6E+02 0.0034 29.5 8.9 41 7-47 101-141 (428)
250 PRK10867 signal recognition pa 42.3 1.5E+02 0.0032 29.8 8.6 42 6-47 101-142 (433)
251 PRK06270 homoserine dehydrogen 41.9 1.1E+02 0.0023 29.6 7.5 59 348-407 80-150 (341)
252 cd01981 Pchlide_reductase_B Pc 41.4 1.5E+02 0.0032 29.7 8.8 29 102-133 367-395 (430)
253 PRK08305 spoVFB dipicolinate s 41.2 47 0.001 29.1 4.4 42 1-43 1-42 (196)
254 PRK04940 hypothetical protein; 41.2 63 0.0014 27.9 5.1 31 105-135 60-91 (180)
255 TIGR00708 cobA cob(I)alamin ad 41.1 2.3E+02 0.005 24.3 11.1 36 5-41 5-40 (173)
256 PRK10964 ADP-heptose:LPS hepto 41.0 2.9E+02 0.0062 26.2 10.4 131 268-428 179-321 (322)
257 PRK04539 ppnK inorganic polyph 40.8 43 0.00093 31.5 4.5 54 354-429 67-124 (296)
258 PRK12446 undecaprenyldiphospho 40.3 39 0.00085 32.7 4.3 32 352-383 86-120 (352)
259 PRK13982 bifunctional SbtC-lik 39.6 62 0.0013 32.7 5.6 38 6-44 257-306 (475)
260 TIGR03878 thermo_KaiC_2 KaiC d 39.4 1.3E+02 0.0028 27.7 7.4 37 7-44 38-74 (259)
261 PRK03372 ppnK inorganic polyph 38.7 47 0.001 31.5 4.4 54 354-429 71-128 (306)
262 TIGR02015 BchY chlorophyllide 38.7 2.4E+02 0.0052 28.1 9.6 28 102-132 352-379 (422)
263 PF07015 VirC1: VirC1 protein; 38.6 92 0.002 28.1 5.9 43 8-51 4-47 (231)
264 PRK14099 glycogen synthase; Pr 38.2 50 0.0011 33.7 4.8 38 4-44 2-47 (485)
265 PF06825 HSBP1: Heat shock fac 38.2 49 0.0011 22.1 3.1 49 417-470 2-50 (54)
266 TIGR00682 lpxK tetraacyldisacc 38.2 1.4E+02 0.0029 28.5 7.4 38 8-46 33-70 (311)
267 TIGR02095 glgA glycogen/starch 38.1 52 0.0011 33.3 5.0 39 6-45 1-45 (473)
268 TIGR02655 circ_KaiC circadian 37.9 3.3E+02 0.0071 27.8 10.6 40 7-47 265-304 (484)
269 PRK01185 ppnK inorganic polyph 37.3 56 0.0012 30.3 4.6 53 355-429 52-105 (271)
270 PRK07313 phosphopantothenoylcy 37.2 2.7E+02 0.0059 24.0 10.3 51 377-428 113-179 (182)
271 PRK09841 cryptic autophosphory 37.0 3.3E+02 0.0071 29.5 11.0 39 5-44 530-570 (726)
272 TIGR02193 heptsyl_trn_I lipopo 36.5 1.6E+02 0.0034 27.9 7.8 39 7-45 1-40 (319)
273 COG2185 Sbm Methylmalonyl-CoA 36.3 56 0.0012 26.9 3.8 37 4-41 11-47 (143)
274 PRK02231 ppnK inorganic polyph 36.1 70 0.0015 29.7 5.0 59 348-428 35-97 (272)
275 PRK03708 ppnK inorganic polyph 35.6 48 0.0011 30.9 3.9 50 360-429 60-112 (277)
276 TIGR01425 SRP54_euk signal rec 35.4 2.9E+02 0.0064 27.6 9.5 41 6-47 101-141 (429)
277 COG0541 Ffh Signal recognition 35.3 3.2E+02 0.0068 27.3 9.3 59 6-67 101-161 (451)
278 COG0052 RpsB Ribosomal protein 35.0 36 0.00078 30.7 2.8 32 105-136 156-189 (252)
279 PRK03501 ppnK inorganic polyph 34.4 58 0.0013 30.1 4.2 53 356-429 40-97 (264)
280 TIGR02370 pyl_corrinoid methyl 34.1 82 0.0018 27.6 5.0 39 4-43 83-121 (197)
281 PF05225 HTH_psq: helix-turn-h 34.1 58 0.0013 20.7 2.9 26 415-442 1-26 (45)
282 cd01121 Sms Sms (bacterial rad 34.0 3.4E+02 0.0074 26.6 9.6 36 8-44 85-120 (372)
283 PRK02910 light-independent pro 33.9 3.1E+02 0.0067 28.3 9.8 28 102-132 359-386 (519)
284 PRK05647 purN phosphoribosylgl 33.8 3.3E+02 0.0071 23.9 9.0 35 6-43 2-37 (200)
285 COG1435 Tdk Thymidine kinase [ 33.7 3.3E+02 0.0071 23.9 9.3 37 8-45 7-43 (201)
286 PLN02935 Bifunctional NADH kin 33.5 66 0.0014 32.6 4.7 52 355-429 262-318 (508)
287 PRK06067 flagellar accessory p 33.3 68 0.0015 28.8 4.5 38 7-45 27-64 (234)
288 PF13499 EF-hand_7: EF-hand do 33.0 54 0.0012 22.4 3.0 55 407-465 10-64 (66)
289 PRK14075 pnk inorganic polypho 32.9 73 0.0016 29.3 4.6 50 360-429 44-94 (256)
290 TIGR00173 menD 2-succinyl-5-en 32.6 2E+02 0.0044 28.7 8.1 25 359-383 65-95 (432)
291 cd02070 corrinoid_protein_B12- 32.6 80 0.0017 27.7 4.7 37 5-42 82-118 (201)
292 TIGR02699 archaeo_AfpA archaeo 32.6 57 0.0012 28.0 3.6 29 17-45 10-39 (174)
293 TIGR00730 conserved hypothetic 32.5 1.3E+02 0.0029 25.8 5.9 36 349-384 89-133 (178)
294 cd01840 SGNH_hydrolase_yrhL_li 32.5 1E+02 0.0023 25.3 5.2 37 267-304 51-87 (150)
295 PF06180 CbiK: Cobalt chelatas 32.2 72 0.0016 29.4 4.4 38 268-305 2-42 (262)
296 PRK11823 DNA repair protein Ra 32.1 3.7E+02 0.008 27.1 9.8 38 7-45 82-119 (446)
297 COG1484 DnaC DNA replication p 31.9 63 0.0014 29.7 4.0 38 5-43 105-142 (254)
298 TIGR01007 eps_fam capsular exo 31.8 3.4E+02 0.0074 23.5 10.7 37 6-43 17-55 (204)
299 TIGR00379 cobB cobyrinic acid 31.1 5.3E+02 0.011 26.0 10.8 105 8-136 2-120 (449)
300 TIGR00732 dprA DNA protecting 31.0 3E+02 0.0065 24.6 8.1 73 332-405 119-210 (220)
301 COG2086 FixA Electron transfer 30.8 97 0.0021 28.5 4.9 37 98-134 104-146 (260)
302 PRK12726 flagellar biosynthesi 30.7 4.4E+02 0.0096 26.0 9.5 39 7-46 208-246 (407)
303 PF01210 NAD_Gly3P_dh_N: NAD-d 30.6 43 0.00094 28.0 2.5 30 8-43 2-31 (157)
304 PRK13011 formyltetrahydrofolat 30.1 3.5E+02 0.0075 25.4 8.6 38 3-43 87-125 (286)
305 PRK14076 pnk inorganic polypho 30.0 70 0.0015 33.4 4.4 51 359-429 350-404 (569)
306 KOG0780 Signal recognition par 30.0 1.7E+02 0.0037 28.7 6.4 42 5-47 100-142 (483)
307 PRK06732 phosphopantothenate-- 29.8 65 0.0014 29.0 3.7 37 6-43 1-49 (229)
308 cd02071 MM_CoA_mut_B12_BD meth 29.7 88 0.0019 24.8 4.1 36 7-43 1-36 (122)
309 PRK10416 signal recognition pa 29.5 3.3E+02 0.0073 25.9 8.6 39 6-45 115-153 (318)
310 cd03412 CbiK_N Anaerobic cobal 29.4 85 0.0018 25.2 3.9 37 268-304 2-40 (127)
311 TIGR00110 ilvD dihydroxy-acid 29.2 3.6E+02 0.0078 27.8 9.0 42 95-136 79-124 (535)
312 TIGR00147 lipid kinase, YegS/R 29.1 1.7E+02 0.0036 27.4 6.5 27 360-386 60-92 (293)
313 cd00532 MGS-like MGS-like doma 29.1 2.8E+02 0.006 21.6 7.4 84 18-131 10-104 (112)
314 PF07429 Glyco_transf_56: 4-al 28.9 1.2E+02 0.0026 29.2 5.2 82 339-428 245-332 (360)
315 PRK13236 nitrogenase reductase 28.8 1E+02 0.0023 28.9 5.1 42 1-43 1-43 (296)
316 TIGR02329 propionate_PrpR prop 28.7 4.5E+02 0.0098 27.2 9.9 42 90-135 131-172 (526)
317 PF04558 tRNA_synt_1c_R1: Glut 28.6 53 0.0011 27.9 2.7 30 392-429 103-132 (164)
318 PRK14092 2-amino-4-hydroxy-6-h 28.4 1.2E+02 0.0026 25.7 4.8 31 266-296 6-36 (163)
319 TIGR03837 efp_adjacent_2 conse 27.9 63 0.0014 31.2 3.3 29 15-43 10-38 (371)
320 PF08766 DEK_C: DEK C terminal 27.5 1.9E+02 0.0041 19.1 6.4 33 415-449 1-33 (54)
321 KOG0100 Molecular chaperones G 27.3 1.1E+02 0.0024 29.8 4.8 64 376-446 499-566 (663)
322 PF08323 Glyco_transf_5: Starc 27.3 50 0.0011 30.1 2.5 23 21-44 21-43 (245)
323 TIGR01196 edd 6-phosphoglucona 26.9 4.7E+02 0.01 27.3 9.4 106 4-136 63-179 (601)
324 PRK06276 acetolactate synthase 26.8 2.3E+02 0.0049 29.8 7.6 26 359-384 65-96 (586)
325 COG1066 Sms Predicted ATP-depe 26.7 1.2E+02 0.0027 29.9 5.0 38 8-47 96-133 (456)
326 COG0299 PurN Folate-dependent 26.4 3E+02 0.0064 24.1 6.7 132 268-444 52-186 (200)
327 PF02776 TPP_enzyme_N: Thiamin 26.2 1.2E+02 0.0026 25.8 4.5 27 360-386 67-99 (172)
328 PF02844 GARS_N: Phosphoribosy 26.1 85 0.0019 24.1 3.2 29 102-130 59-90 (100)
329 TIGR03880 KaiC_arch_3 KaiC dom 26.1 2.4E+02 0.0052 25.0 6.7 39 7-46 18-56 (224)
330 TIGR00661 MJ1255 conserved hyp 26.1 2E+02 0.0042 27.3 6.5 33 351-383 87-119 (321)
331 PLN02939 transferase, transfer 26.0 1.3E+02 0.0028 33.3 5.6 41 4-45 480-526 (977)
332 COG1663 LpxK Tetraacyldisaccha 26.0 1.7E+02 0.0036 28.1 5.6 37 8-45 52-88 (336)
333 cd01141 TroA_d Periplasmic bin 25.9 1E+02 0.0022 26.4 4.1 29 105-133 69-99 (186)
334 cd03818 GT1_ExpC_like This fam 25.8 2.5E+02 0.0054 27.5 7.4 26 281-306 9-34 (396)
335 PF05728 UPF0227: Uncharacteri 25.5 1.4E+02 0.0031 25.9 4.9 30 107-136 61-91 (187)
336 TIGR00416 sms DNA repair prote 25.3 3.6E+02 0.0077 27.3 8.3 36 8-44 97-132 (454)
337 PF10093 DUF2331: Uncharacteri 25.1 73 0.0016 31.0 3.2 29 15-43 10-38 (374)
338 PRK08155 acetolactate synthase 25.0 2E+02 0.0042 30.0 6.7 25 360-384 79-109 (564)
339 PRK00039 ruvC Holliday junctio 25.0 1.6E+02 0.0035 24.9 5.0 40 96-135 52-106 (164)
340 PF00282 Pyridoxal_deC: Pyrido 24.9 1.1E+02 0.0024 29.9 4.6 70 358-429 104-191 (373)
341 cd00983 recA RecA is a bacter 24.6 1.6E+02 0.0036 28.1 5.5 38 8-46 58-95 (325)
342 PRK08322 acetolactate synthase 24.6 2.7E+02 0.0058 28.9 7.6 27 358-384 64-96 (547)
343 COG3660 Predicted nucleoside-d 24.5 1.8E+02 0.0039 26.8 5.3 61 345-408 234-299 (329)
344 KOG2941 Beta-1,4-mannosyltrans 24.4 6.6E+02 0.014 24.4 10.5 120 4-133 11-136 (444)
345 cd02069 methionine_synthase_B1 24.2 1.4E+02 0.0031 26.5 4.8 39 4-43 87-125 (213)
346 PRK07525 sulfoacetaldehyde ace 24.1 5.2E+02 0.011 27.1 9.7 27 358-384 69-101 (588)
347 cd07025 Peptidase_S66 LD-Carbo 24.1 1.3E+02 0.0027 28.2 4.6 30 278-307 44-73 (282)
348 PHA02754 hypothetical protein; 24.1 1.1E+02 0.0024 20.5 2.9 28 415-449 3-30 (67)
349 TIGR00347 bioD dethiobiotin sy 23.8 4.2E+02 0.0092 21.9 8.9 28 13-41 6-33 (166)
350 PRK07414 cob(I)yrinic acid a,c 23.8 4.7E+02 0.01 22.5 11.0 36 5-41 21-56 (178)
351 cd07037 TPP_PYR_MenD Pyrimidin 23.8 53 0.0012 27.8 1.9 26 360-385 63-94 (162)
352 KOG2941 Beta-1,4-mannosyltrans 23.7 6.8E+02 0.015 24.3 12.0 144 266-443 253-424 (444)
353 cd07038 TPP_PYR_PDC_IPDC_like 23.7 1.1E+02 0.0024 25.8 3.8 26 360-385 62-93 (162)
354 PF03308 ArgK: ArgK protein; 23.4 5.9E+02 0.013 23.5 9.2 37 5-42 29-65 (266)
355 PF01372 Melittin: Melittin; 23.4 15 0.00033 19.7 -0.9 17 366-382 1-17 (26)
356 PF13167 GTP-bdg_N: GTP-bindin 23.2 1.7E+02 0.0036 22.3 4.2 27 104-130 56-84 (95)
357 COG2910 Putative NADH-flavin r 23.1 77 0.0017 27.5 2.6 31 7-42 2-32 (211)
358 COG2159 Predicted metal-depend 22.9 2.7E+02 0.0059 26.2 6.6 28 279-306 140-167 (293)
359 PRK00865 glutamate racemase; P 22.8 3.2E+02 0.0069 25.1 7.0 108 12-126 91-200 (261)
360 TIGR03877 thermo_KaiC_1 KaiC d 22.4 3.3E+02 0.0071 24.5 6.9 39 7-46 23-61 (237)
361 KOG2635 Medium subunit of clat 22.3 1.2E+02 0.0026 29.8 4.0 41 416-456 140-180 (512)
362 TIGR01162 purE phosphoribosyla 22.3 4.7E+02 0.01 22.0 8.5 16 433-448 131-146 (156)
363 TIGR01761 thiaz-red thiazoliny 22.3 3.1E+02 0.0068 26.5 7.0 62 345-406 52-120 (343)
364 COG0299 PurN Folate-dependent 22.3 1.8E+02 0.0039 25.4 4.7 30 104-133 28-57 (200)
365 COG0552 FtsY Signal recognitio 22.3 4.2E+02 0.009 25.5 7.5 42 5-47 138-180 (340)
366 PRK04020 rps2P 30S ribosomal p 22.1 60 0.0013 28.6 1.9 32 105-136 114-147 (204)
367 PRK04761 ppnK inorganic polyph 22.1 62 0.0013 29.5 2.1 25 360-384 28-56 (246)
368 PF06506 PrpR_N: Propionate ca 22.1 1.1E+02 0.0024 26.1 3.6 42 90-135 111-152 (176)
369 PF09314 DUF1972: Domain of un 22.0 5.3E+02 0.011 22.4 9.9 48 16-70 16-64 (185)
370 TIGR00345 arsA arsenite-activa 22.0 6.5E+02 0.014 23.4 9.9 23 23-46 3-25 (284)
371 TIGR03018 pepcterm_TyrKin exop 21.9 1.9E+02 0.004 25.4 5.1 39 5-43 34-74 (207)
372 PRK04296 thymidine kinase; Pro 21.6 5.3E+02 0.011 22.2 8.2 34 8-42 4-38 (190)
373 PF10929 DUF2811: Protein of u 21.5 2.7E+02 0.0059 18.8 5.5 43 416-462 7-50 (57)
374 PF04244 DPRP: Deoxyribodipyri 21.5 88 0.0019 28.1 2.9 26 17-43 46-71 (224)
375 TIGR00118 acolac_lg acetolacta 21.4 2.9E+02 0.0062 28.8 7.1 26 359-384 66-97 (558)
376 TIGR03457 sulphoacet_xsc sulfo 21.3 5E+02 0.011 27.1 8.9 26 359-384 66-97 (579)
377 PF10649 DUF2478: Protein of u 21.1 5.1E+02 0.011 21.9 8.4 32 11-43 4-36 (159)
378 COG1090 Predicted nucleoside-d 21.1 3.5E+02 0.0075 25.3 6.5 19 23-42 12-30 (297)
379 TIGR01012 Sa_S2_E_A ribosomal 21.0 61 0.0013 28.4 1.7 32 105-136 108-141 (196)
380 PRK11199 tyrA bifunctional cho 20.9 7.9E+02 0.017 24.0 9.8 32 5-42 98-130 (374)
381 CHL00076 chlB photochlorophyll 20.8 1.2E+02 0.0026 31.2 4.0 32 99-133 368-399 (513)
382 PF02571 CbiJ: Precorrin-6x re 20.8 1.8E+02 0.0039 26.6 4.8 33 100-132 189-225 (249)
383 COG4088 Predicted nucleotide k 20.7 1.3E+02 0.0028 26.8 3.5 34 7-41 3-36 (261)
384 PRK07449 2-succinyl-5-enolpyru 20.7 2.4E+02 0.0052 29.4 6.4 25 360-384 75-105 (568)
385 PRK11914 diacylglycerol kinase 20.7 1.9E+02 0.0042 27.2 5.3 27 360-386 67-97 (306)
386 TIGR00715 precor6x_red precorr 20.5 5.5E+02 0.012 23.6 7.9 53 370-423 164-220 (256)
387 cd03466 Nitrogenase_NifN_2 Nit 20.4 1.4E+02 0.0031 29.8 4.5 32 98-132 365-396 (429)
388 COG2210 Peroxiredoxin family p 20.4 2E+02 0.0044 23.5 4.4 35 6-42 5-39 (137)
389 PF02702 KdpD: Osmosensitive K 20.3 1.7E+02 0.0036 25.9 4.1 39 4-43 4-42 (211)
390 COG2099 CobK Precorrin-6x redu 20.2 1.2E+02 0.0026 27.7 3.3 39 94-132 55-99 (257)
391 TIGR01281 DPOR_bchL light-inde 20.1 1.7E+02 0.0036 26.9 4.6 36 6-42 1-36 (268)
392 PRK13011 formyltetrahydrofolat 20.0 7.3E+02 0.016 23.2 9.4 114 287-443 156-271 (286)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.7e-72 Score=553.00 Aligned_cols=454 Identities=38% Similarity=0.701 Sum_probs=343.4
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhh-hhhhccCCCCeEEEEcCCCCCC----cc
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAI-TSVLQGLPEHINHVLLPPVNFE----ED 75 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lp~~~~~----~~ 75 (471)
|-..|+||+++|+|++||++||+.||+.|+.++|++|||++++.+.. .. ..... ..+++++.+|..... ..
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~--~~~~~~~~--~~~i~~~~lp~p~~~glp~~~ 76 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAA--SAQSKFLN--STGVDIVGLPSPDISGLVDPS 76 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchh--hhhhcccc--CCCceEEECCCccccCCCCCC
Confidence 55667899999999999999999999999734599999999987653 11 11111 125888888742211 11
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccc
Q 012063 76 VKAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISC 155 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 155 (471)
......+........+.+++.++++ ..+|+|||+|.++.|+..+|+++|||+++|++++++.++.+.+.+........
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 77 AHVVTKIGVIMREAVPTLRSKIAEM--HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHhc--CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 1122223333333445555555543 23789999999999999999999999999999999888776665543221111
Q ss_pred cccCCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcC--CC---CCC
Q 012063 156 EVRDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEE--PS---MRS 230 (471)
Q Consensus 156 ~~~~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~~---~~~ 230 (471)
+.....+++.+|++ .+++..+++..+.++....+..+.+......+++++++|||++||..+.+.++.. .. .++
T Consensus 155 ~~~~~~~~~~iPg~-~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~ 233 (481)
T PLN02992 155 EHTVQRKPLAMPGC-EPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVP 233 (481)
T ss_pred ccccCCCCcccCCC-CccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCc
Confidence 11011124557888 6777788886554443344556666667778899999999999999999888642 11 237
Q ss_pred eEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCC
Q 012063 231 IYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKS 310 (471)
Q Consensus 231 v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 310 (471)
++.|||+.+.... ...+.+|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++...+..
T Consensus 234 v~~VGPl~~~~~~-------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~ 306 (481)
T PLN02992 234 VYPIGPLCRPIQS-------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGS 306 (481)
T ss_pred eEEecCccCCcCC-------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 9999999764221 123457999999998899999999999999999999999999999999999997531100
Q ss_pred CCCccccCCC---CCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccc
Q 012063 311 ASGSFFDVHS---KTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYA 387 (471)
Q Consensus 311 ~~~~~~~~~~---~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 387 (471)
.....++... .......+|++|.+|++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~ 386 (481)
T PLN02992 307 ACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFA 386 (481)
T ss_pred cccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccc
Confidence 0000000000 0001234899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHHHHH
Q 012063 388 EQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVS--DGGSSTKTLSQLVH 465 (471)
Q Consensus 388 DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~ 465 (471)
||+.||+++++++|+|+.++.. ++.++.++|+++|+++|.+++|+.+|++++++++.+++|++ +||||.+++++|++
T Consensus 387 DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~ 465 (481)
T PLN02992 387 EQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTK 465 (481)
T ss_pred hhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 9999999996339999999752 13489999999999999887889999999999999999994 69999999999999
Q ss_pred HHHh
Q 012063 466 KWKN 469 (471)
Q Consensus 466 ~~~~ 469 (471)
+++.
T Consensus 466 ~~~~ 469 (481)
T PLN02992 466 ECQR 469 (481)
T ss_pred HHHH
Confidence 9874
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.6e-72 Score=544.74 Aligned_cols=451 Identities=38% Similarity=0.676 Sum_probs=342.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhcc--CCCCeEEEEcCCCCCCc----chhH
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQG--LPEHINHVLLPPVNFEE----DVKA 78 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lp~~~~~~----~~~~ 78 (471)
++||+++|+|++||++||+.||+.|+.++|..||+++++.+............ ...+++++.+|..+.+. +.+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 45999999999999999999999998655999999987654431000010111 11258999888543211 1122
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCc-eEEEecchHHHHHHHhhccccchhccccc
Q 012063 79 EIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVP-SYLYFLTNALSLSLLHYMPKLDEVISCEV 157 (471)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 157 (471)
...+........+.+++.++++. .+++|||+|.++.|+..+|+++||| .++|++++++.++.++++|........+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~--~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~ 160 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMK--RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEY 160 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcC--CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccccc
Confidence 22333444445555666665432 3689999999999999999999999 58888998888777777665432211111
Q ss_pred cCCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCC-----CCCeE
Q 012063 158 RDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPS-----MRSIY 232 (471)
Q Consensus 158 ~~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-----~~~v~ 232 (471)
.+..+++.+|++ .+++..+++..+.++....+..+.+......+++++++|||++||+.+.+.+++... .++++
T Consensus 161 ~~~~~~~~vPg~-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~ 239 (470)
T PLN03015 161 VDIKEPLKIPGC-KPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVY 239 (470)
T ss_pred CCCCCeeeCCCC-CCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceE
Confidence 111234557998 778888888766444333355555666678889999999999999999988876310 13699
Q ss_pred EeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCC
Q 012063 233 PIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSAS 312 (471)
Q Consensus 233 ~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 312 (471)
+|||+..... . ...+.+|.+|||++++++||||||||...++.+++.+++.+|+.++++|||+++..... .
T Consensus 240 ~VGPl~~~~~-~------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~--~ 310 (470)
T PLN03015 240 PIGPIVRTNV-H------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASY--L 310 (470)
T ss_pred EecCCCCCcc-c------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccc--c
Confidence 9999985321 1 12234799999999889999999999999999999999999999999999999743110 0
Q ss_pred CccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhh
Q 012063 313 GSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLN 392 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 392 (471)
.. .+.........+|++|.+|++++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 311 ~~--~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~n 388 (470)
T PLN03015 311 GA--SSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMN 388 (470)
T ss_pred cc--ccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHH
Confidence 00 0000000123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeecCC-CCCCccCHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 393 AVILSEDLNVALRPPE-YENGLIKREEIAKVIKGLMHG--EDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 393 a~~~~~~~G~g~~~~~-~~~~~~~~~~l~~~i~~~l~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
|+++++++|+|+.+.. .+++.++.++|+++|+++|.+ ++|+++|+||+++++++++|+++||||++++++|+++++-
T Consensus 389 a~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~~ 468 (470)
T PLN03015 389 ATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCYL 468 (470)
T ss_pred HHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhccc
Confidence 9999665999999952 122358999999999999963 5689999999999999999999999999999999998853
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.2e-71 Score=542.29 Aligned_cols=430 Identities=26% Similarity=0.451 Sum_probs=336.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC---c-ch
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE---E-DV 76 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~-~~ 76 (471)
|++++.||+++|+|++||++||++||+.|+.+ |+.|||++++.+.. ... .....+++++.+|+.-.+ . ..
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~--~~~---~~~~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFN--TIH---LDPSSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhh--hcc---cCCCCCEEEEEcCCCCCCccccccc
Confidence 88889999999999999999999999999875 99999999986543 111 111235899988753221 1 11
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcCCCc-cEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccc
Q 012063 77 KAEIQIVLAIKRSLSSVRDVFKSLVASTHL-MALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISC 155 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 155 (471)
+....+........+.+++.++++....+| +|||+|.++.|+..+|+++|||++.|++++++.+..+++. ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~~---- 149 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YINN---- 149 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhcc----
Confidence 122222223334555666666654322244 9999999999999999999999999999988877665432 1110
Q ss_pred cccCCCCcccCCCCCcCccCCCCCCCccCc--CchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEE
Q 012063 156 EVRDMEQPLKLPGFTIPIHGRDFPDPLQDR--KNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYP 233 (471)
Q Consensus 156 ~~~~~~~~~~~p~~~~p~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~ 233 (471)
...+..+|++ .+++..+++..+... ....+..+.+.+....+++++++|||++||+.+.+.++.. . +++.
T Consensus 150 ----~~~~~~~pg~-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~--~v~~ 221 (449)
T PLN02173 150 ----GSLTLPIKDL-PLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-C--PVLT 221 (449)
T ss_pred ----CCccCCCCCC-CCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-C--CeeE
Confidence 0123446888 667888888766432 2234555666677788899999999999999999888653 2 7999
Q ss_pred eccCcCCCC----C--CCccCCC-C--ccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEe
Q 012063 234 IGPIIRTVS----D--GELVDGS-E--SHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVK 304 (471)
Q Consensus 234 vGpl~~~~~----~--~~~~~~~-~--~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~ 304 (471)
|||+++... . ......+ + ..+++|.+||++++++|||||||||+...+.+++.+++.+| ++.+|+|+++
T Consensus 222 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr 299 (449)
T PLN02173 222 IGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVR 299 (449)
T ss_pred EcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEe
Confidence 999975311 0 0000001 1 22346999999998899999999999999999999999999 6778999998
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeecc
Q 012063 305 SPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWP 384 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 384 (471)
.... ..+|+++.+++.++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 300 ~~~~-----------------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 362 (449)
T PLN02173 300 ASEE-----------------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP 362 (449)
T ss_pred ccch-----------------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC
Confidence 5322 24788999998778899899999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHhhhcceeecCCCC-CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 012063 385 LYAEQRLNAVILSEDLNVALRPPEYE-NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQL 463 (471)
Q Consensus 385 ~~~DQ~~na~~~~~~~G~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 463 (471)
+++||+.||+++++.+|+|+.+...+ ++.++.++|+++|+++|.+++++++|++|+++++++++|+++||||.+++++|
T Consensus 363 ~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~ 442 (449)
T PLN02173 363 QWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTF 442 (449)
T ss_pred chhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999999998679998886432 23579999999999999988889999999999999999999999999999999
Q ss_pred HHHHH
Q 012063 464 VHKWK 468 (471)
Q Consensus 464 ~~~~~ 468 (471)
+++++
T Consensus 443 v~~~~ 447 (449)
T PLN02173 443 VSKIQ 447 (449)
T ss_pred HHHhc
Confidence 99985
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.6e-71 Score=542.17 Aligned_cols=440 Identities=30% Similarity=0.472 Sum_probs=335.0
Q ss_pred CCC--CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC---cc
Q 012063 1 MAQ--VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE---ED 75 (471)
Q Consensus 1 m~~--~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~ 75 (471)
|++ .++||+++|+|++||++||+.||+.|+.+ |+.|||++++.+... .. ... .++++..+|..-.+ ..
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~-~~----~~~-~~i~~~~ip~glp~~~~~~ 73 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFS-PS----DDF-TDFQFVTIPESLPESDFKN 73 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccc-cc----cCC-CCeEEEeCCCCCCcccccc
Confidence 664 47799999999999999999999999875 999999999876431 10 111 25888888753221 11
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhc--CCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhc
Q 012063 76 VKAEIQIVLAIKRSLSSVRDVFKSLVA--STHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVI 153 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 153 (471)
......+........+.+++.++++.. ..+++|||+|.++.|+..+|+++|||++.|++++++.++.+.+++.+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~ 153 (451)
T PLN02410 74 LGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANN 153 (451)
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhcc
Confidence 112222222333455566667766532 246799999999999999999999999999999999887776654332210
Q ss_pred c-ccccC--CCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCC
Q 012063 154 S-CEVRD--MEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRS 230 (471)
Q Consensus 154 ~-~~~~~--~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 230 (471)
. .+... ...+..+|++ .+++..+++...+.........+.. .....+++++++|||++||+.+.+.+++.. +++
T Consensus 154 ~~~~~~~~~~~~~~~iPg~-~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-~~~ 230 (451)
T PLN02410 154 VLAPLKEPKGQQNELVPEF-HPLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQL-QIP 230 (451)
T ss_pred CCCCccccccCccccCCCC-CCCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhcc-CCC
Confidence 0 01011 1123346888 6777777776543322222222222 223567889999999999999999987642 348
Q ss_pred eEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCC
Q 012063 231 IYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKS 310 (471)
Q Consensus 231 v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 310 (471)
+++|||++...... ...+..+.+|.+|||++++++||||||||....+.+++.+++.+|+.++++|+|+++.+...
T Consensus 231 v~~vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~- 306 (451)
T PLN02410 231 VYPIGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVR- 306 (451)
T ss_pred EEEecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccc-
Confidence 99999997643211 00012235689999999889999999999999999999999999999999999999853210
Q ss_pred CCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccch
Q 012063 311 ASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQR 390 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 390 (471)
+. .....+|++|.+|+++++. +.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 307 -------~~---~~~~~lp~~f~er~~~~g~-v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 375 (451)
T PLN02410 307 -------GS---EWIESLPKEFSKIISGRGY-IVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQK 375 (451)
T ss_pred -------cc---chhhcCChhHHHhccCCeE-EEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCH
Confidence 00 0112489999999987764 558999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 391 LNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 391 ~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
.||+++++++|+|+.+. .. +++++|+++|+++|.++++++||++++++++.+++|+++||||++++++|+++++.
T Consensus 376 ~na~~~~~~~~~G~~~~-~~---~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 376 VNARYLECVWKIGIQVE-GD---LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHhCeeEEeC-Cc---ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99999998569999997 33 89999999999999887788999999999999999999999999999999999875
No 5
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1e-70 Score=545.92 Aligned_cols=454 Identities=38% Similarity=0.659 Sum_probs=342.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC----cEEEEEeCCCCCCc--hhhhhhh---ccCCCCeEEEEcCCCCCCc
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHD----ISVTFLVPTIGPPS--KAITSVL---QGLPEHINHVLLPPVNFEE 74 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~G----h~Vt~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~lp~~~~~~ 74 (471)
.|.||+++|+|++||++||+.||+.|+.+ | +.|||++++.+.+. ....... .....+++++.+|......
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 35699999999999999999999999876 5 89999998765321 0111111 1111158999998654221
Q ss_pred ch-hHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhc
Q 012063 75 DV-KAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVI 153 (471)
Q Consensus 75 ~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 153 (471)
+. .....+..+.....+.+++.++++ ..+++|||+|.++.|+..+|+++|||++.|++++++.++.+.+.+......
T Consensus 81 ~~e~~~~~~~~~~~~~~~~l~~~L~~l--~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 158 (480)
T PLN00164 81 DAAGVEEFISRYIQLHAPHVRAAIAGL--SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEV 158 (480)
T ss_pred ccccHHHHHHHHHHhhhHHHHHHHHhc--CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccc
Confidence 11 111222223333444444444433 225699999999999999999999999999999999998888776543221
Q ss_pred cccccCCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCC--C---C
Q 012063 154 SCEVRDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEP--S---M 228 (471)
Q Consensus 154 ~~~~~~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~--~---~ 228 (471)
..++.+...++.+||+ .+++..+++..+..+....+..+........+++++++|||++||+.+.+.++... . .
T Consensus 159 ~~~~~~~~~~~~iPGl-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 237 (480)
T PLN00164 159 AVEFEEMEGAVDVPGL-PPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPA 237 (480)
T ss_pred cCcccccCcceecCCC-CCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCC
Confidence 1111111134457998 77888889876654433334455555566778899999999999999999987642 1 1
Q ss_pred CCeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCC
Q 012063 229 RSIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDD 308 (471)
Q Consensus 229 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 308 (471)
++++.|||++...... .....+.+|.+|||+++++|||||||||+...+.+++.+++.+|+.++++|||+++....
T Consensus 238 ~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~ 313 (480)
T PLN00164 238 PTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPA 313 (480)
T ss_pred CceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3799999997532111 002345679999999988999999999998899999999999999999999999985321
Q ss_pred CCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeecccccc
Q 012063 309 KSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAE 388 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 388 (471)
. . .... .+......+|++|.++++++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 314 ~--~--~~~~-~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~D 388 (480)
T PLN00164 314 A--G--SRHP-TDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAE 388 (480)
T ss_pred c--c--cccc-cccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcccc
Confidence 0 0 0000 000111248899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhcceeecCCC--CCCccCHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 389 QRLNAVILSEDLNVALRPPEY--ENGLIKREEIAKVIKGLMHGE--DGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 389 Q~~na~~~~~~~G~g~~~~~~--~~~~~~~~~l~~~i~~~l~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
|+.||+++++++|+|+.+... +++.+++++|+++|+++|.++ +++.+|++|+++++.+++|+.+||||++++++|+
T Consensus 389 Q~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v 468 (480)
T PLN00164 389 QHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLA 468 (480)
T ss_pred chhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999876548999998532 123579999999999999864 4889999999999999999999999999999999
Q ss_pred HHHHhc
Q 012063 465 HKWKNQ 470 (471)
Q Consensus 465 ~~~~~~ 470 (471)
++|+..
T Consensus 469 ~~~~~~ 474 (480)
T PLN00164 469 REIRHG 474 (480)
T ss_pred HHHHhc
Confidence 999763
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-70 Score=542.80 Aligned_cols=447 Identities=29% Similarity=0.489 Sum_probs=332.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC------c-ch
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE------E-DV 76 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~-~~ 76 (471)
+++||+++|+|++||++||+.||+.|+.+ |++|||++|+.+.. .........+ +++++.+|..... . ..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~--~~~~~~~~~~-~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLP--FLNPLLSKHP-SIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHH--HHhhhcccCC-CeeEEeCCCCCcCCCCCCCcChh
Confidence 58999999999999999999999999875 99999999987654 2222111122 4777665421110 1 11
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcC--CCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhcc
Q 012063 77 KAEIQIVLAIKRSLSSVRDVFKSLVAS--THLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVIS 154 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~ 154 (471)
+........+..+...+.+.+.+++++ .+++|||+|.+++|+..+|+++|||++.|++++++.++.+++++......
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~- 162 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTK- 162 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccc-
Confidence 111111222333333333434433332 46799999999999999999999999999999999999887764321100
Q ss_pred ccccCCCCcc---cCCCCCcCccCCCCCCCccC--cCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCC
Q 012063 155 CEVRDMEQPL---KLPGFTIPIHGRDFPDPLQD--RKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMR 229 (471)
Q Consensus 155 ~~~~~~~~~~---~~p~~~~p~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 229 (471)
....+..+++ .+||+ .+++..+++..+.. ........+.+.......++++++|||++||+.+.+.++.....+
T Consensus 163 ~~~~~~~~~~~~~~iPg~-~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 241 (477)
T PLN02863 163 INPDDQNEILSFSKIPNC-PKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHD 241 (477)
T ss_pred ccccccccccccCCCCCC-CCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCC
Confidence 0000111121 35787 67788888765532 122233334444444566789999999999999999987643223
Q ss_pred CeEEeccCcCCCCCCC---ccCCC-CccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEec
Q 012063 230 SIYPIGPIIRTVSDGE---LVDGS-ESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKS 305 (471)
Q Consensus 230 ~v~~vGpl~~~~~~~~---~~~~~-~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 305 (471)
++++|||+++...... ..+.+ +..+++|.+|||.+++++||||||||+...+.+++.+++.+|+.++++|||+++.
T Consensus 242 ~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~ 321 (477)
T PLN02863 242 RVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKE 321 (477)
T ss_pred CeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 7999999975432110 00011 1124579999999988999999999998899999999999999999999999985
Q ss_pred CCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccc
Q 012063 306 PDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPL 385 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~ 385 (471)
.... ......+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 322 ~~~~------------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 322 PVNE------------ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred Cccc------------ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 3210 0112358999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 386 YAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 386 ~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
++||+.||+++++++|+|+.+...+.+.++.+++.++|+++|.+ +++||+||+++++.+++|+++||||++++++|++
T Consensus 390 ~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~ 467 (477)
T PLN02863 390 AADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVK 467 (477)
T ss_pred cccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 99999999998754899999854323457899999999999942 3899999999999999999999999999999999
Q ss_pred HHHhc
Q 012063 466 KWKNQ 470 (471)
Q Consensus 466 ~~~~~ 470 (471)
++++.
T Consensus 468 ~i~~~ 472 (477)
T PLN02863 468 HVVEL 472 (477)
T ss_pred HHHHh
Confidence 99875
No 7
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-70 Score=536.76 Aligned_cols=436 Identities=37% Similarity=0.684 Sum_probs=327.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEE--eCCCCCCc-hh-hhhhhccCCCCeEEEEcCCCCCC-c--c
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHD--ISVTFL--VPTIGPPS-KA-ITSVLQGLPEHINHVLLPPVNFE-E--D 75 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~G--h~Vt~~--~~~~~~~~-~~-~~~~~~~~~~~~~~~~lp~~~~~-~--~ 75 (471)
+-||+++|+|++||++||+.||+.|+.+ | +.||++ +++.+... .. ........+ +++|+.+|..... . .
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTATYISSVSSSFP-SITFHHLPAVTPYSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhhhhccccCCCC-CeEEEEcCCCCCCCCccc
Confidence 3499999999999999999999999875 8 556654 44432210 00 001111112 5899998854321 1 1
Q ss_pred h--hHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhc
Q 012063 76 V--KAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVI 153 (471)
Q Consensus 76 ~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 153 (471)
. +....+........+.+.+.++++....+++|||+|.++.|+..+|+++|||+++|++++++.++.+.+.+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 1 11223333344555666677766533345699999999999999999999999999999999999888765432111
Q ss_pred cccccCCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEE
Q 012063 154 SCEVRDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYP 233 (471)
Q Consensus 154 ~~~~~~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~ 233 (471)
.........++.+||+ .+++..+++..+..+....+..+.+......+++++++|||++||..+.+.+......++++.
T Consensus 161 ~~~~~~~~~~v~iPg~-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~ 239 (451)
T PLN03004 161 PGKNLKDIPTVHIPGV-PPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYP 239 (451)
T ss_pred cccccccCCeecCCCC-CCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEE
Confidence 1100011123457898 778888888876544334455555666677788999999999999999999875321237999
Q ss_pred eccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCC
Q 012063 234 IGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASG 313 (471)
Q Consensus 234 vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 313 (471)
|||+....... ... ...+.+|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++....
T Consensus 240 vGPl~~~~~~~--~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~----- 311 (451)
T PLN03004 240 IGPLIVNGRIE--DRN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE----- 311 (451)
T ss_pred EeeeccCcccc--ccc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc-----
Confidence 99997532111 000 1123569999999988999999999999999999999999999999999999985311
Q ss_pred ccccCCCCCCCCC-CCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhh
Q 012063 314 SFFDVHSKTDPFG-FLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLN 392 (471)
Q Consensus 314 ~~~~~~~~~~~~~-~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 392 (471)
+........ .+|++|.+|++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 312 ----~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~n 387 (451)
T PLN03004 312 ----LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387 (451)
T ss_pred ----ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhh
Confidence 000000112 389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHH
Q 012063 393 AVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTK 458 (471)
Q Consensus 393 a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 458 (471)
|+++++++|+|+.++..+.+.+++++|+++|+++|++ ++||++++++++++++|+++||||++
T Consensus 388 a~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 388 RVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999865899999975423358999999999999987 89999999999999999999999874
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-69 Score=531.03 Aligned_cols=445 Identities=30% Similarity=0.600 Sum_probs=332.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCc--h-hhhhhhccCCCCeEEEEcCCCCC-Cc---c
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHD--ISVTFLVPTIGPPS--K-AITSVLQGLPEHINHVLLPPVNF-EE---D 75 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~G--h~Vt~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~lp~~~~-~~---~ 75 (471)
|.||+++|+|++||++||+.||+.|+.+ | ..||+++++.+... . .........+ +++|+.+|+... .. .
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~-~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHLDTYVKSIASSQP-FVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhhHHhhhhccCCCC-CeEEEEeCCCCCCCccccc
Confidence 4699999999999999999999999875 7 99999998865421 0 1111111122 599999984321 11 1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhcC-----CCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccc
Q 012063 76 VKAEIQIVLAIKRSLSSVRDVFKSLVAS-----THLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLD 150 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 150 (471)
.+....+...+....+.+++.+.+++++ .+++|||+|.++.|+..+|+++|||.++|++++++.++.+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 1222233333333434344455554332 23499999999999999999999999999999998888877665432
Q ss_pred hhcccc-ccCCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCC
Q 012063 151 EVISCE-VRDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMR 229 (471)
Q Consensus 151 ~~~~~~-~~~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 229 (471)
...... ..+...++.+||++.++...+++..+.... .+..+.+......+++++++||+++||.++...++.....+
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p 238 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYP 238 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCC
Confidence 211000 001113345788723688888887664222 14445556667788999999999999999888875411112
Q ss_pred CeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCC
Q 012063 230 SIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDK 309 (471)
Q Consensus 230 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 309 (471)
+++.|||++...... ....+...+.+|.+|||++++++||||||||....+.+++++++.+|+.++++|||+++....
T Consensus 239 ~v~~VGPl~~~~~~~-~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~- 316 (468)
T PLN02207 239 SVYAVGPIFDLKAQP-HPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV- 316 (468)
T ss_pred cEEEecCCcccccCC-CCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc-
Confidence 799999998643211 000001123579999999988999999999999999999999999999999999999985321
Q ss_pred CCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccc
Q 012063 310 SASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQ 389 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 389 (471)
.....+|++|.++.++++ .+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 317 -------------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ 382 (468)
T PLN02207 317 -------------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQ 382 (468)
T ss_pred -------------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccc
Confidence 111358999999887666 556999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcceeecCCC----CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 390 RLNAVILSEDLNVALRPPEY----ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 390 ~~na~~~~~~~G~g~~~~~~----~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
+.||+++++++|+|+.+... .++.++.++|+++|+++|.+ ++++||+||+++++.+++|+++||||++++++|++
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIH 461 (468)
T ss_pred hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999877769999976321 12347999999999999973 46899999999999999999999999999999999
Q ss_pred HHHhc
Q 012063 466 KWKNQ 470 (471)
Q Consensus 466 ~~~~~ 470 (471)
++++.
T Consensus 462 ~~~~~ 466 (468)
T PLN02207 462 DVIGI 466 (468)
T ss_pred HHHhc
Confidence 99863
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.9e-69 Score=533.04 Aligned_cols=449 Identities=28% Similarity=0.434 Sum_probs=337.4
Q ss_pred CCC--CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhh---hhhcc--CC---CCeEEEEcCCC
Q 012063 1 MAQ--VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAIT---SVLQG--LP---EHINHVLLPPV 70 (471)
Q Consensus 1 m~~--~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~---~~~~~--~~---~~~~~~~lp~~ 70 (471)
|.+ .++||+++|+|++||++||+.||+.|+.+ |..|||++++.+.. ... ..... .+ ..++|..+|+.
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~--~~~~a~~~~~~~~~~~~~~~i~~~~~pdg 77 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGK--KMRQANKIQDGVLKPVGDGFIRFEFFEDG 77 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhh--hhhccccccccccccCCCCeEEEeeCCCC
Confidence 554 47899999999999999999999999875 99999999986543 111 11000 01 12556555532
Q ss_pred CCC--c-chhHHHHHHHHHHHhHHHHHHHHHHhhcC-CCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhc
Q 012063 71 NFE--E-DVKAEIQIVLAIKRSLSSVRDVFKSLVAS-THLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYM 146 (471)
Q Consensus 71 ~~~--~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 146 (471)
-.+ . ..+....+..+.....+.+.+.++.+... .+++|||+|.++.|+..+|+++|||.++|++++++.++.+++.
T Consensus 78 lp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 78 WAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred CCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 111 1 11122222222234455566666654222 3459999999999999999999999999999999998887776
Q ss_pred cccchhccccccCCCCcccCCCCCcCccCCCCCCCccC--cCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhc
Q 012063 147 PKLDEVISCEVRDMEQPLKLPGFTIPIHGRDFPDPLQD--RKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQE 224 (471)
Q Consensus 147 p~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 224 (471)
+.-..... ...+...++.+|++ .+++..+++..++. .....+..+.+.+....+++++++|||++||..+.+.++.
T Consensus 158 ~~~~~~~~-~~~~~~~~~~iPgl-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 235 (480)
T PLN02555 158 YHGLVPFP-TETEPEIDVQLPCM-PLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSK 235 (480)
T ss_pred hhcCCCcc-cccCCCceeecCCC-CCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhh
Confidence 32100000 00001124457998 67888889876642 2233455566666777889999999999999999988875
Q ss_pred CCCCCCeEEeccCcCCCCCC-CccCCC-CccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEE
Q 012063 225 EPSMRSIYPIGPIIRTVSDG-ELVDGS-ESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWV 302 (471)
Q Consensus 225 ~~~~~~v~~vGpl~~~~~~~-~~~~~~-~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~ 302 (471)
.. +++.|||+....... ...+.+ +..+.+|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||+
T Consensus 236 ~~---~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~ 312 (480)
T PLN02555 236 LC---PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWV 312 (480)
T ss_pred CC---CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 32 499999997642211 000111 3345689999999988899999999999999999999999999999999999
Q ss_pred EecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceee
Q 012063 303 VKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIA 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 382 (471)
++.... ++ + .....+|+++.++.+++ +.+++|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 313 ~~~~~~---------~~-~-~~~~~lp~~~~~~~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~ 380 (480)
T PLN02555 313 MRPPHK---------DS-G-VEPHVLPEEFLEKAGDK-GKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC 380 (480)
T ss_pred EecCcc---------cc-c-chhhcCChhhhhhcCCc-eEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEe
Confidence 974311 00 0 01135788898887655 466699999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHhhhcceeecCCC--CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 012063 383 WPLYAEQRLNAVILSEDLNVALRPPEY--ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTL 460 (471)
Q Consensus 383 ~P~~~DQ~~na~~~~~~~G~g~~~~~~--~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 460 (471)
+|+++||+.||+++++++|+|+.+... +.+.++.++|.++|+++|++++|+++|+||++|++.+++|+++||||.+++
T Consensus 381 ~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l 460 (480)
T PLN02555 381 FPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNF 460 (480)
T ss_pred CCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999999999867999999521 123489999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 012063 461 SQLVHKWKN 469 (471)
Q Consensus 461 ~~~~~~~~~ 469 (471)
++|+++|++
T Consensus 461 ~~~v~~i~~ 469 (480)
T PLN02555 461 QEFVDKLVR 469 (480)
T ss_pred HHHHHHHHh
Confidence 999999976
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.7e-69 Score=533.84 Aligned_cols=435 Identities=25% Similarity=0.442 Sum_probs=324.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcc-hhHH
Q 012063 3 QVKHHVACMPSPGMGHLIPHVELAKQ--LVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEED-VKAE 79 (471)
Q Consensus 3 ~~~~~i~~~~~p~~GH~~P~l~La~~--L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~ 79 (471)
.++.||+++|+|++||++||+.||++ |++ +|++|||++++.+.. ......... ..+++..+|+.-.+.. ....
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~--~~~~~~~~~-~~~~~~~~~~glp~~~~~~~~ 81 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARD--LLSTVEKPR-RPVDLVFFSDGLPKDDPRAPE 81 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhh--hhccccCCC-CceEEEECCCCCCCCcccCHH
Confidence 35789999999999999999999999 445 499999999986643 121111111 2467766653222111 1112
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccccC
Q 012063 80 IQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVRD 159 (471)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 159 (471)
..+..+.... .+.+++++++.+|||||+|.++.|+..+|+++|||.++|++.++..++.+.+.+....... ...+
T Consensus 82 ~~~~~~~~~~----~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~-~~~~ 156 (456)
T PLN02210 82 TLLKSLNKVG----AKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFP-DLED 156 (456)
T ss_pred HHHHHHHHhh----hHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCC-cccc
Confidence 2222222222 3344444444589999999999999999999999999999999988887765432111111 1111
Q ss_pred CCCcccCCCCCcCccCCCCCCCccCcCchHHHHHH-HHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEeccCc
Q 012063 160 MEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMI-QIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPII 238 (471)
Q Consensus 160 ~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~ 238 (471)
...+..+|++ .++...+++..++......+.... +.......++++++||++++|..+.+.+++. +++++|||++
T Consensus 157 ~~~~~~~Pgl-~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~---~~v~~VGPl~ 232 (456)
T PLN02210 157 LNQTVELPAL-PLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL---KPVIPIGPLV 232 (456)
T ss_pred cCCeeeCCCC-CCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc---CCEEEEcccC
Confidence 1123456888 667778888766543333333333 3334556778999999999999999888763 3799999997
Q ss_pred CCC---CCCC-c-cC--CC-CccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCC
Q 012063 239 RTV---SDGE-L-VD--GS-ESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKS 310 (471)
Q Consensus 239 ~~~---~~~~-~-~~--~~-~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 310 (471)
+.. .... . .+ .+ |..+.+|.+|||+++++|||||||||....+.+++++++.+|+.++++|||+++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~-- 310 (456)
T PLN02210 233 SPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK-- 310 (456)
T ss_pred chhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc--
Confidence 521 1000 0 00 01 2345679999999988999999999998889999999999999999999999975321
Q ss_pred CCCccccCCCCCCCCCCCChhhHHhhc-CCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccc
Q 012063 311 ASGSFFDVHSKTDPFGFLPTGFLDRTK-EQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQ 389 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 389 (471)
...+.++.++.. +++ ++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 311 ---------------~~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ 374 (456)
T PLN02210 311 ---------------AQNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQ 374 (456)
T ss_pred ---------------ccchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 113355666653 455 566999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcceeecCCCC-CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 390 RLNAVILSEDLNVALRPPEYE-NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 390 ~~na~~~~~~~G~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+.||+++++++|+|+.+...+ ++.+++++|+++|+++|.+++|++||+||++|++.+++|+++||||++++++|+++|+
T Consensus 375 ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 375 PIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999999987689999986421 3458999999999999988778899999999999999999999999999999999986
No 11
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.3e-69 Score=526.16 Aligned_cols=430 Identities=24% Similarity=0.398 Sum_probs=325.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCC--CCeEEEEcCCCCC-Ccc--
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLP--EHINHVLLPPVNF-EED-- 75 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lp~~~~-~~~-- 75 (471)
|.+.|+||+++|+|++||++||+.||+.|+.+ |+.|||++++.+.. ..... ...+ ..+.++++|..+. ..+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~--~~~~~-~~~~~~~~v~~~~~p~~~glp~g~e 76 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALK--QLEHL-NLFPHNIVFRSVTVPHVDGLPVGTE 76 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhh--hhccc-ccCCCCceEEEEECCCcCCCCCccc
Confidence 78889999999999999999999999999865 99999999987654 12211 1111 1266777773221 111
Q ss_pred --hhHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhc
Q 012063 76 --VKAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVI 153 (471)
Q Consensus 76 --~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~ 153 (471)
.+........+..+...+++.+++++++.++||||+|. +.|+..+|+++|||++.|++++++.++.+.. +. ...
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--~~~ 152 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--GEL 152 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--ccC
Confidence 00111112233334445556666665555789999995 8999999999999999999999988877653 11 000
Q ss_pred cccccCCCCcccCCCCCc---CccCCCCCCCcc-Cc--CchHHHHHH-HHHhhcccCcEEEEccccccChHHHHHhhcCC
Q 012063 154 SCEVRDMEQPLKLPGFTI---PIHGRDFPDPLQ-DR--KNDAYRFMI-QIRKRYSLADGILINTFMELEPGVIKALQEEP 226 (471)
Q Consensus 154 ~~~~~~~~~~~~~p~~~~---p~~~~~l~~~~~-~~--~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 226 (471)
....|++|. .++..+++.... .+ ....+..+. +......+++++++|||++||+.+.+.++...
T Consensus 153 ---------~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~ 223 (453)
T PLN02764 153 ---------GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC 223 (453)
T ss_pred ---------CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc
Confidence 011366521 244455554211 01 111222222 23356677889999999999999999987631
Q ss_pred CCCCeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecC
Q 012063 227 SMRSIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSP 306 (471)
Q Consensus 227 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 306 (471)
+++++.|||+++..... ...+.+|.+|||+++++|||||||||+...+.+++.+++.+|+.++.+|+|+++..
T Consensus 224 -~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~ 296 (453)
T PLN02764 224 -RKKVLLTGPVFPEPDKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPP 296 (453)
T ss_pred -CCcEEEeccCccCcccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 23799999997543111 12346799999999999999999999988999999999999999999999999853
Q ss_pred CCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeecccc
Q 012063 307 DDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY 386 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 386 (471)
.. .. ...+.+|++|.++++++++++.+|+||.+||+|+++++||||||||||+||+++|||||++|++
T Consensus 297 ~~----------~~--~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~ 364 (453)
T PLN02764 297 RG----------SS--TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL 364 (453)
T ss_pred CC----------Cc--chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 21 00 1124589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 387 AEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG--EDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 387 ~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
.||+.||+++++++|+|+.+...+.+.++.++|+++|+++|++ ++++++|++++++++.+++ +|||.+++++|+
T Consensus 365 ~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv 440 (453)
T PLN02764 365 GDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFI 440 (453)
T ss_pred cchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH
Confidence 9999999999755999999754311248999999999999986 3488899999999999975 899999999999
Q ss_pred HHHHhc
Q 012063 465 HKWKNQ 470 (471)
Q Consensus 465 ~~~~~~ 470 (471)
++|++.
T Consensus 441 ~~~~~~ 446 (453)
T PLN02764 441 ESLQDL 446 (453)
T ss_pred HHHHHh
Confidence 999985
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.6e-69 Score=538.22 Aligned_cols=450 Identities=36% Similarity=0.601 Sum_probs=337.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEEeCCCCCCc----h-hhhhhhccCCCCeEEEEcCCCCCCcchh
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHD--ISVTFLVPTIGPPS----K-AITSVLQGLPEHINHVLLPPVNFEEDVK 77 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~G--h~Vt~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~lp~~~~~~~~~ 77 (471)
|+||+++|+|++||++||+.||+.|+.+ | ..|||++++.+... . ...........+++++.+|.........
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTED 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccc
Confidence 6899999999999999999999999875 8 89999999876431 0 0111111112259999998654321111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcC------CCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccch
Q 012063 78 AEIQIVLAIKRSLSSVRDVFKSLVAS------THLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDE 151 (471)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 151 (471)
..+...+....+.+.+.+++++.. .+++|||+|.++.|+..+|+++|||++.|++++++.++.+.+++....
T Consensus 81 --~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~ 158 (481)
T PLN02554 81 --PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYD 158 (481)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcc
Confidence 133334445566667777766432 224899999999999999999999999999999999998888765432
Q ss_pred hccc---cccCCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCC-
Q 012063 152 VISC---EVRDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPS- 227 (471)
Q Consensus 152 ~~~~---~~~~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~- 227 (471)
.... +..+...++.+|+++.|++..+++..+.++ ..+..+.+......+++++++||+.+||..+...+.+...
T Consensus 159 ~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~ 236 (481)
T PLN02554 159 EKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGD 236 (481)
T ss_pred ccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccC
Confidence 2100 111111344578873377878888766443 3345556666777889999999999999999988876311
Q ss_pred CCCeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCC
Q 012063 228 MRSIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPD 307 (471)
Q Consensus 228 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 307 (471)
.+++++|||+....... ...+...+.+|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++...
T Consensus 237 ~~~v~~vGpl~~~~~~~--~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~ 314 (481)
T PLN02554 237 LPPVYPVGPVLHLENSG--DDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRAS 314 (481)
T ss_pred CCCEEEeCCCccccccc--cccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 13799999994322211 0001234568999999998889999999999888999999999999999999999997531
Q ss_pred CCCCCCccccC-CCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeecccc
Q 012063 308 DKSASGSFFDV-HSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY 386 (471)
Q Consensus 308 ~~~~~~~~~~~-~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 386 (471)
. .++-.+ +........+|++|.++.++++ ++++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 315 ~----~~~~~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 315 P----NIMKEPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred c----cccccccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 1 000000 0000011236899999887665 556999999999999999999999999999999999999999999
Q ss_pred ccchhhHHH-HHhhhcceeecCCC--------CCCccCHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHHHHhhcCCCH
Q 012063 387 AEQRLNAVI-LSEDLNVALRPPEY--------ENGLIKREEIAKVIKGLMH-GEDGVIIRDRMNRLKDAAAAAVSDGGSS 456 (471)
Q Consensus 387 ~DQ~~na~~-~~~~~G~g~~~~~~--------~~~~~~~~~l~~~i~~~l~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~ 456 (471)
+||+.||++ +++ +|+|+.+... +++.+++++|+++|+++|+ + ++||+||+++++.+++|+++|||+
T Consensus 390 ~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss 465 (481)
T PLN02554 390 AEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSS 465 (481)
T ss_pred ccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChH
Confidence 999999954 667 9999998631 1134899999999999997 4 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 012063 457 TKTLSQLVHKWKNQ 470 (471)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (471)
.+++++|+++|+++
T Consensus 466 ~~~l~~lv~~~~~~ 479 (481)
T PLN02554 466 HTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999876
No 13
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-68 Score=527.45 Aligned_cols=434 Identities=23% Similarity=0.372 Sum_probs=326.8
Q ss_pred CCC-CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCc-chhH
Q 012063 1 MAQ-VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEE-DVKA 78 (471)
Q Consensus 1 m~~-~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~ 78 (471)
|+. .+.||+++|+|++||++||+.||+.|+.+ |++||+++++.+.. ......... .+++++.+|+...+. ..+.
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~--~~~~~~~~~-~~i~~v~lp~g~~~~~~~~~ 76 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHR--RISATLDPK-LGITFMSISDGQDDDPPRDF 76 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhh--hhhhccCCC-CCEEEEECCCCCCCCccccH
Confidence 554 35799999999999999999999999875 99999999886543 111111111 258999998643221 1111
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccc
Q 012063 79 EIQIVLAIK-RSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEV 157 (471)
Q Consensus 79 ~~~~~~~~~-~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 157 (471)
. .+...+. ...+.+.++++++....+++|||+|.++.|+..+|+++|||+++|++++++.++.+.+.+........+.
T Consensus 77 ~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 77 F-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred H-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 1 2222222 3445555555554222346899999999999999999999999999999988887766553322110000
Q ss_pred c---CCCCcc-cCCCCCcCccCCCCCCCccCc--CchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCC---CC
Q 012063 158 R---DMEQPL-KLPGFTIPIHGRDFPDPLQDR--KNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEP---SM 228 (471)
Q Consensus 158 ~---~~~~~~-~~p~~~~p~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~---~~ 228 (471)
. ...++. .+|++ .+++..+++..+... ....+..+.+.++...+++++++|||++||+.+...+.... ..
T Consensus 156 ~~~~~~~~~~~~~Pg~-~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 234 (448)
T PLN02562 156 TGCPRQLEKICVLPEQ-PLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQN 234 (448)
T ss_pred ccccccccccccCCCC-CCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccC
Confidence 0 011122 36887 667888888765432 22335666666777788899999999999998877665321 12
Q ss_pred CCeEEeccCcCCCCCCCccCCC-CccccchhhhhccCCCccEEEEEeCCCc-CCCHHhHHHHHHHHHhCCCceEEEEecC
Q 012063 229 RSIYPIGPIIRTVSDGELVDGS-ESHQCMCIRWLDNQASGSVLFVSFGSGG-TLSYDQLEELALGLELSEQQFLWVVKSP 306 (471)
Q Consensus 229 ~~v~~vGpl~~~~~~~~~~~~~-~~~~~~~~~wl~~~~~~~~i~vs~GS~~-~~~~~~~~~~~~al~~~~~~~~~~~~~~ 306 (471)
++++.|||++...... ....+ +..+.+|.+|||++++++||||||||+. ..+.+++++++.+|+.++++|||+++.+
T Consensus 235 ~~v~~iGpl~~~~~~~-~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 235 PQILQIGPLHNQEATT-ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred CCEEEecCcccccccc-cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3799999998653211 00000 1234568899999988899999999985 6788999999999999999999999753
Q ss_pred CCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeecccc
Q 012063 307 DDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY 386 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 386 (471)
.. +.+|++|.++.++ |+++.+|+||.+||+|+++++||||||||||+||+++|||||++|++
T Consensus 314 ~~-----------------~~l~~~~~~~~~~-~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 375 (448)
T PLN02562 314 WR-----------------EGLPPGYVERVSK-QGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVA 375 (448)
T ss_pred ch-----------------hhCCHHHHHHhcc-CEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcc
Confidence 22 2478888888754 55677999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 012063 387 AEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHK 466 (471)
Q Consensus 387 ~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (471)
+||+.||+++++++|+|+.+. + ++.++|.++|+++|++ ++||+||+++++++.++ .+||||++++++|+++
T Consensus 376 ~DQ~~na~~~~~~~g~g~~~~--~---~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~ 446 (448)
T PLN02562 376 GDQFVNCAYIVDVWKIGVRIS--G---FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDE 446 (448)
T ss_pred cchHHHHHHHHHHhCceeEeC--C---CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 999999999987579998884 3 7899999999999988 89999999999998876 5679999999999998
Q ss_pred HH
Q 012063 467 WK 468 (471)
Q Consensus 467 ~~ 468 (471)
++
T Consensus 447 ~~ 448 (448)
T PLN02562 447 LK 448 (448)
T ss_pred hC
Confidence 74
No 14
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1e-68 Score=524.82 Aligned_cols=425 Identities=24% Similarity=0.381 Sum_probs=324.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCC--C-CCcc----h
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPV--N-FEED----V 76 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~--~-~~~~----~ 76 (471)
.|+||+++|+|++||++|++.||+.|+++ ||+|||++++.+.. ..... ...+.++++..++.. + ...+ .
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~--~i~~~-~a~~~~i~~~~l~~p~~dgLp~g~~~~~ 78 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQK--QLEHH-NLFPDSIVFHPLTIPPVNGLPAGAETTS 78 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhh--hhhcc-cCCCCceEEEEeCCCCccCCCCCccccc
Confidence 35899999999999999999999999875 99999999875443 11111 112234566654321 1 1111 1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhcccc
Q 012063 77 KAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCE 156 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 156 (471)
+....+...+....+.+.+.+++++++.++||||+| ++.|+..+|+++|||++.|++++++.++ +.+.+. ...
T Consensus 79 ~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~~~--- 151 (442)
T PLN02208 79 DIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--GKL--- 151 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--ccc---
Confidence 122233344555566677777777666689999999 5889999999999999999999998654 444332 000
Q ss_pred ccCCCCcccCCCCCc---CccCCCCCCCccCcCchHHHHHHHHH-hhcccCcEEEEccccccChHHHHHhhcCCCCCCeE
Q 012063 157 VRDMEQPLKLPGFTI---PIHGRDFPDPLQDRKNDAYRFMIQIR-KRYSLADGILINTFMELEPGVIKALQEEPSMRSIY 232 (471)
Q Consensus 157 ~~~~~~~~~~p~~~~---p~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~ 232 (471)
...+|++|. .++..+++.. ......+..+.+.+ +...+++++++|||++||+.+.+.+.... +++++
T Consensus 152 ------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~-~~~v~ 222 (442)
T PLN02208 152 ------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY-HKKVL 222 (442)
T ss_pred ------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc-CCCEE
Confidence 012366621 1345555542 12223344444333 45678899999999999999998887532 34899
Q ss_pred EeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCC
Q 012063 233 PIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSAS 312 (471)
Q Consensus 233 ~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 312 (471)
+|||++...... ..++.+|.+|||++++++||||||||+..++.+++.+++.+++.++.+++|+++....
T Consensus 223 ~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~---- 292 (442)
T PLN02208 223 LTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRG---- 292 (442)
T ss_pred EEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCc----
Confidence 999998653211 2356789999999988999999999999889999999999998899999999986421
Q ss_pred CccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhh
Q 012063 313 GSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLN 392 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 392 (471)
. ......+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 293 -----~---~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~n 364 (442)
T PLN02208 293 -----S---STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLF 364 (442)
T ss_pred -----c---cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHH
Confidence 0 01123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012063 393 AVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGE--DGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 393 a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (471)
|+++++++|+|+.+...+++.+++++|+++|+++|+++ +++++|++++++++.+. ++|||++++++|++++++.
T Consensus 365 a~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 365 TRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 99877669999999754334689999999999999764 38899999999999975 3789999999999999874
No 15
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.1e-68 Score=524.14 Aligned_cols=438 Identities=26% Similarity=0.420 Sum_probs=328.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhcc--CCCCeEEEEcCCCCCCc----chhH
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQG--LPEHINHVLLPPVNFEE----DVKA 78 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lp~~~~~~----~~~~ 78 (471)
+.||+++|+|++||++||+.||+.|+.++|+.|||++++.+.. +....+ ...+++|+.+++.-.+. ..+.
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~----~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~ 78 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH----RSMIPNHNNVENLSFLTFSDGFDDGVISNTDDV 78 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh----hhhhccCCCCCCEEEEEcCCCCCCccccccccH
Confidence 3599999999999999999999999854599999999985422 111111 11258899887422211 1122
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcC-CCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccc
Q 012063 79 EIQIVLAIKRSLSSVRDVFKSLVAS-THLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEV 157 (471)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~-~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 157 (471)
...+........+.+.+.++++... .+++|||+|.++.|+..+|+++|||++.|++++++.++.+++.+...
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------- 151 (455)
T PLN02152 79 QNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------- 151 (455)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC-------
Confidence 2334444445556777777665322 45699999999999999999999999999999999988877654211
Q ss_pred cCCCCcccCCCCCcCccCCCCCCCccCc--CchHHHHHHHHHhhcc--cCcEEEEccccccChHHHHHhhcCCCCCCeEE
Q 012063 158 RDMEQPLKLPGFTIPIHGRDFPDPLQDR--KNDAYRFMIQIRKRYS--LADGILINTFMELEPGVIKALQEEPSMRSIYP 233 (471)
Q Consensus 158 ~~~~~~~~~p~~~~p~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~ 233 (471)
...+.+|++ .++...+++..+... .......+.+...... .++++++|||++||+.+.+.++.. +++.
T Consensus 152 ---~~~~~iPgl-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~----~v~~ 223 (455)
T PLN02152 152 ---NSVFEFPNL-PSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNI----EMVA 223 (455)
T ss_pred ---CCeeecCCC-CCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcC----CEEE
Confidence 113447888 677888888876432 1222344444444333 246999999999999999888652 7999
Q ss_pred eccCcCCCCCCCcc-CC--C-CccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCC
Q 012063 234 IGPIIRTVSDGELV-DG--S-ESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDK 309 (471)
Q Consensus 234 vGpl~~~~~~~~~~-~~--~-~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 309 (471)
|||+.+........ +. + +..+.+|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++.....
T Consensus 224 VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~ 303 (455)
T PLN02152 224 VGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNR 303 (455)
T ss_pred EcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 99997532100000 00 1 12245799999999888999999999999999999999999999999999999863210
Q ss_pred CCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccc
Q 012063 310 SASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQ 389 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 389 (471)
... ..+. + .....+|++|.++.++++ ++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||
T Consensus 304 ~~~---~~~~-~-~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ 377 (455)
T PLN02152 304 EAK---IEGE-E-ETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQ 377 (455)
T ss_pred ccc---cccc-c-ccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 000 0000 0 001124788888877665 556999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 390 RLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 390 ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+.||+++++++|+|+.+....++.++.++|+++|+++|++ ++.+||+||+++++.+++++.+||||++++++|+++|.
T Consensus 378 ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 378 PANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred hHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 9999999986688877753323357999999999999974 45689999999999999999999999999999999873
No 16
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-68 Score=527.93 Aligned_cols=448 Identities=29% Similarity=0.482 Sum_probs=330.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhc---cCCCCeEEEEcCCC----CCCcc-
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQ---GLPEHINHVLLPPV----NFEED- 75 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lp~~----~~~~~- 75 (471)
+++||+++|+|++||++||+.||+.|+.+ |+.|||++++.+.. ....... ..+..++|+.+|.. ....+
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~--~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNAS--RFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHH--HHhhhhhhccccCCCeEEEEcCCCCccCCCCCCc
Confidence 35799999999999999999999999875 99999999987653 1221111 01113888888721 11111
Q ss_pred ---hh-HHHHHHHHHHHhHHHHHHHHHHhhcC--CCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhcccc
Q 012063 76 ---VK-AEIQIVLAIKRSLSSVRDVFKSLVAS--THLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKL 149 (471)
Q Consensus 76 ---~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~ 149 (471)
.+ ....+...+......+.+.+++++++ .+++|||+|.++.|+..+|+++|||+++|++++++..+.+......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 11 11122223333444455555555543 4689999999999999999999999999999999887765432211
Q ss_pred chhccccccCCCCcccCCCCCc--CccCCCCCCCccCcCchHHHHHHHHHhh-cccCcEEEEccccccChHHHHHhhcCC
Q 012063 150 DEVISCEVRDMEQPLKLPGFTI--PIHGRDFPDPLQDRKNDAYRFMIQIRKR-YSLADGILINTFMELEPGVIKALQEEP 226 (471)
Q Consensus 150 ~~~~~~~~~~~~~~~~~p~~~~--p~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~ 226 (471)
.... .......++.+|++|. .++..+++..+... ..+..+...+.. ...++++++|||++||+.+.+.++...
T Consensus 164 ~~~~--~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~ 239 (491)
T PLN02534 164 NAHL--SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI 239 (491)
T ss_pred cccc--cCCCCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc
Confidence 1111 0111123455688721 36666777644221 113333333333 345779999999999999998887643
Q ss_pred CCCCeEEeccCcCCCCCCC--cc-CCCCc-cccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEE
Q 012063 227 SMRSIYPIGPIIRTVSDGE--LV-DGSES-HQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWV 302 (471)
Q Consensus 227 ~~~~v~~vGpl~~~~~~~~--~~-~~~~~-~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~ 302 (471)
+++++.|||+........ .. ..... .+.+|.+|||++++++||||||||......+++.+++.+|+.++++|+|+
T Consensus 240 -~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~ 318 (491)
T PLN02534 240 -KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWV 318 (491)
T ss_pred -CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 247999999975321100 00 00011 23569999999988999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceee
Q 012063 303 VKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIA 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 382 (471)
++.+.. .. + .....+|++|.+++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 319 ~r~~~~---------~~-~-~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 319 IKTGEK---------HS-E-LEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred EecCcc---------cc-c-hhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEe
Confidence 985321 00 0 001136899999988999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHhhhcceeecCCC-------C-C-C-ccCHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHHHHHh
Q 012063 383 WPLYAEQRLNAVILSEDLNVALRPPEY-------E-N-G-LIKREEIAKVIKGLMH--GEDGVIIRDRMNRLKDAAAAAV 450 (471)
Q Consensus 383 ~P~~~DQ~~na~~~~~~~G~g~~~~~~-------~-~-~-~~~~~~l~~~i~~~l~--~~~~~~~r~~a~~l~~~~~~~~ 450 (471)
+|+++||+.||+++++++|+|+.+... + + | .+++++|.++|+++|. +++|+++|+||++|++.+++|+
T Consensus 388 ~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av 467 (491)
T PLN02534 388 WPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM 467 (491)
T ss_pred ccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998779999987421 1 1 2 4899999999999997 4668999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhc
Q 012063 451 SDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 451 ~~~g~~~~~~~~~~~~~~~~ 470 (471)
.+||||++++++|+++|+++
T Consensus 468 ~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 468 ELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 17
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.3e-69 Score=527.00 Aligned_cols=447 Identities=25% Similarity=0.423 Sum_probs=331.2
Q ss_pred CCC-CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCC---Cc--
Q 012063 1 MAQ-VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNF---EE-- 74 (471)
Q Consensus 1 m~~-~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~-- 74 (471)
|.. .++||+++|+|++||++||++||+.|+.| |+.|||++++.+.. ...........+++++.+|..+. ..
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~--~~~~~~~~~~~~i~~~~lp~p~~dglp~~~ 77 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLH--RLPKIPSQLSSSITLVSFPLPSVPGLPSSA 77 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHH--hhhhccccCCCCeeEEECCCCccCCCCCCc
Confidence 443 46899999999999999999999999876 99999999987653 11111111223588888872211 11
Q ss_pred --chhHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchh
Q 012063 75 --DVKAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEV 152 (471)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 152 (471)
..+........+..+...+++.+++++++.+++|||+|.++.|+..+|+++|||+++|+++++..++.+.++......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 78 ESSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred ccccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 111111111233344455666666666655899999999999999999999999999999999888776544322111
Q ss_pred ccccccCCCCcc-cCCCCCcC------ccCCCCCCCccCc--CchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhh
Q 012063 153 ISCEVRDMEQPL-KLPGFTIP------IHGRDFPDPLQDR--KNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQ 223 (471)
Q Consensus 153 ~~~~~~~~~~~~-~~p~~~~p------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 223 (471)
.. .....+.. .+|++ .| +...+++..+... ....+..+.+......+++++++|||++||..+.+.++
T Consensus 158 ~~--~~~~~~~~~~~p~~-~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~ 234 (472)
T PLN02670 158 GD--LRSTAEDFTVVPPW-VPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLS 234 (472)
T ss_pred cc--CCCccccccCCCCc-CCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHH
Confidence 11 11111111 23544 33 3344666554321 11223444455556678899999999999999999987
Q ss_pred cCCCCCCeEEeccCcCCC-CCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEE
Q 012063 224 EEPSMRSIYPIGPIIRTV-SDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWV 302 (471)
Q Consensus 224 ~~~~~~~v~~vGpl~~~~-~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~ 302 (471)
... +++++.|||+.+.. ..............+|.+|||++++++||||||||+..++.+++.+++.+|+.++++|||+
T Consensus 235 ~~~-~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv 313 (472)
T PLN02670 235 DLY-RKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWV 313 (472)
T ss_pred Hhh-CCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 632 23799999997531 1110000000112579999999988999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceee
Q 012063 303 VKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIA 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 382 (471)
++.... . .......+|++|.++++++++++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 314 ~r~~~~---------~--~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 382 (472)
T PLN02670 314 LRNEPG---------T--TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLIL 382 (472)
T ss_pred EcCCcc---------c--ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEe
Confidence 985321 0 00112358999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHhhhcceeecCCCC-CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 012063 383 WPLYAEQRLNAVILSEDLNVALRPPEYE-NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLS 461 (471)
Q Consensus 383 ~P~~~DQ~~na~~~~~~~G~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~ 461 (471)
+|+++||+.||+++++ +|+|+.+...+ ++.++.++|+++|+++|.+++|++||+||+++++.++. .+...+.++
T Consensus 383 ~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~ 457 (472)
T PLN02670 383 FPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVD 457 (472)
T ss_pred CcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHH
Confidence 9999999999999998 99999996432 34589999999999999887788999999999999986 577788999
Q ss_pred HHHHHHHhc
Q 012063 462 QLVHKWKNQ 470 (471)
Q Consensus 462 ~~~~~~~~~ 470 (471)
+|+++++++
T Consensus 458 ~~~~~l~~~ 466 (472)
T PLN02670 458 ELVHYLREN 466 (472)
T ss_pred HHHHHHHHh
Confidence 999998875
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.1e-68 Score=532.46 Aligned_cols=450 Identities=30% Similarity=0.509 Sum_probs=330.9
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhcc----CC---CCeEEEEcCCCC--
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQG----LP---EHINHVLLPPVN-- 71 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~lp~~~-- 71 (471)
|+.+++||+++|+|++||++|++.||++|+.| |++|||++++.+... ....... .+ ..+.++++|..+
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~--i~~~~a~~~~~~~~~~~~~~~~~~p~~~~g 77 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKI--FEKPIEAFKNLNPGLEIDIQIFNFPCVELG 77 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhh--hhhhhhhhcccCCCCcceEEEeeCCCCcCC
Confidence 78888999999999999999999999999876 999999999876531 1111110 11 134445555321
Q ss_pred CCc---chh--------HHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHH
Q 012063 72 FEE---DVK--------AEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSL 140 (471)
Q Consensus 72 ~~~---~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~ 140 (471)
... ... ....+...+....+.+.+.+++++++.+|||||+|.++.|+..+|+++|||+++|++++++..
T Consensus 78 lP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 78 LPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 110 000 011223333355667777777777766899999999999999999999999999999988877
Q ss_pred HHHhhccccchhccccccCCCCcccCCCCC--cCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHH
Q 012063 141 SLLHYMPKLDEVISCEVRDMEQPLKLPGFT--IPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGV 218 (471)
Q Consensus 141 ~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~--~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 218 (471)
+..+.......... ..+...++.+|++| ..+...+++.. +........+........+.+++++||++++|.++
T Consensus 158 ~~~~~~~~~~~~~~--~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~ 233 (482)
T PLN03007 158 CASYCIRVHKPQKK--VASSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAY 233 (482)
T ss_pred HHHHHHHhcccccc--cCCCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHH
Confidence 66543321110000 00111223356662 12333333321 12222222333344556778899999999999998
Q ss_pred HHHhhcCCCCCCeEEeccCcCCCCCCC--cc-C-CCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHh
Q 012063 219 IKALQEEPSMRSIYPIGPIIRTVSDGE--LV-D-GSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLEL 294 (471)
Q Consensus 219 ~~~~~~~~~~~~v~~vGpl~~~~~~~~--~~-~-~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~ 294 (471)
.+.+.+.. ..++++|||+........ .. . ..+..+.+|.+|||++++++||||||||+.....+++.+++.+|+.
T Consensus 234 ~~~~~~~~-~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~ 312 (482)
T PLN03007 234 ADFYKSFV-AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEG 312 (482)
T ss_pred HHHHHhcc-CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHH
Confidence 88887542 237999999865322100 00 0 0112246799999999889999999999988889999999999999
Q ss_pred CCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHH
Q 012063 295 SEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESI 374 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal 374 (471)
++++|||+++.... . .+....+|++|.+++.++|+++.+|+||.+||+|+++++|||||||||++||+
T Consensus 313 ~~~~flw~~~~~~~---------~---~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal 380 (482)
T PLN03007 313 SGQNFIWVVRKNEN---------Q---GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGV 380 (482)
T ss_pred CCCCEEEEEecCCc---------c---cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHH
Confidence 99999999986421 0 01123589999999999999999999999999999999999999999999999
Q ss_pred hhCCceeeccccccchhhHHHHHhhhcceeecCCC-----CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 012063 375 VHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY-----ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAA 449 (471)
Q Consensus 375 ~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~-----~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~ 449 (471)
++|||||++|+++||+.||+++++.+++|+.+... +.+.+++++|+++|+++|.++++++||+||+++++.+++|
T Consensus 381 ~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a 460 (482)
T PLN03007 381 AAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAA 460 (482)
T ss_pred HcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987646666654311 1224899999999999999877889999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhc
Q 012063 450 VSDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 450 ~~~~g~~~~~~~~~~~~~~~~ 470 (471)
+.+||||++++++|++++++.
T Consensus 461 ~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 461 VEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HhCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999875
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.5e-68 Score=527.86 Aligned_cols=445 Identities=35% Similarity=0.635 Sum_probs=331.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC---cEEEEEeCCCCCCc---hhhhhhhccCCCCeEEEEcCCCCCCcc--
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHD---ISVTFLVPTIGPPS---KAITSVLQGLPEHINHVLLPPVNFEED-- 75 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~G---h~Vt~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lp~~~~~~~-- 75 (471)
++.||+++|+|++||++||+.||+.|+.+ | +.||+++++.+... ..........+ +++|+.+|.......
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~-~i~~~~lp~~~~p~~~~ 79 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAPQADAFLKSLIASEP-RIRLVTLPEVQDPPPME 79 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcchhhhHHHhhcccCCC-CeEEEECCCCCCCcccc
Confidence 46799999999999999999999999875 8 35677665433220 00111111112 599999985432210
Q ss_pred --h-hHHHHHHHHHHHhHHHHHHHHHHhhcC-----C-CccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhc
Q 012063 76 --V-KAEIQIVLAIKRSLSSVRDVFKSLVAS-----T-HLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYM 146 (471)
Q Consensus 76 --~-~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~-~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 146 (471)
. .....+..+.....+.+++.++++..+ . +++|||+|.++.|+..+|+++|||+++|++++++.++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 1 111234445555666777777765432 1 459999999999999999999999999999999988887766
Q ss_pred cccchhcccccc--CCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhc
Q 012063 147 PKLDEVISCEVR--DMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQE 224 (471)
Q Consensus 147 p~~~~~~~~~~~--~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 224 (471)
+........+.. ...+++.+||++.+++..+++..+++. ..+..+.+......+++++++|||++||+.+.+.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 237 (475)
T PLN02167 160 PERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSR 237 (475)
T ss_pred HHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHh
Confidence 532211110100 111344578873357777777655432 1244455666677889999999999999999988865
Q ss_pred CCCC-CCeEEeccCcCCCCCCCccCCCC-ccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEE
Q 012063 225 EPSM-RSIYPIGPIIRTVSDGELVDGSE-SHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWV 302 (471)
Q Consensus 225 ~~~~-~~v~~vGpl~~~~~~~~~~~~~~-~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~ 302 (471)
.... +++++|||+++...... ...+ ..+.+|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||+
T Consensus 238 ~~~~~p~v~~vGpl~~~~~~~~--~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~ 315 (475)
T PLN02167 238 LPENYPPVYPVGPILSLKDRTS--PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWS 315 (475)
T ss_pred hcccCCeeEEeccccccccccC--CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 3111 27999999986432110 0001 123579999999988999999999998889999999999999999999999
Q ss_pred EecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceee
Q 012063 303 VKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIA 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 382 (471)
++.... + .......+|++|.+++++++. +++|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 316 ~~~~~~---------~--~~~~~~~lp~~~~er~~~rg~-v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~ 383 (475)
T PLN02167 316 IRTNPA---------E--YASPYEPLPEGFMDRVMGRGL-VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIAT 383 (475)
T ss_pred EecCcc---------c--ccchhhhCChHHHHHhccCee-eeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEe
Confidence 985321 0 001123589999999988875 5599999999999999999999999999999999999999
Q ss_pred ccccccchhhHHH-HHhhhcceeecCCC----CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHH
Q 012063 383 WPLYAEQRLNAVI-LSEDLNVALRPPEY----ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSST 457 (471)
Q Consensus 383 ~P~~~DQ~~na~~-~~~~~G~g~~~~~~----~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~ 457 (471)
+|+++||+.||++ +++ +|+|+.+... +++.+++++|+++|+++|.++ +.||++++++++.+++|+++||||.
T Consensus 384 ~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~ 460 (475)
T PLN02167 384 WPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSF 460 (475)
T ss_pred ccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999987 556 9999988642 112479999999999999763 4899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 012063 458 KTLSQLVHKWKN 469 (471)
Q Consensus 458 ~~~~~~~~~~~~ 469 (471)
+++++|+++|+.
T Consensus 461 ~~l~~~v~~i~~ 472 (475)
T PLN02167 461 VAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-67 Score=516.23 Aligned_cols=425 Identities=26% Similarity=0.405 Sum_probs=318.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEc--CCCCC-Ccc----h
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLL--PPVNF-EED----V 76 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p~~~~-~~~----~ 76 (471)
+|+||+++|+|++||++||+.||+.|+++ |++|||++++.+.. ...... ..+.+++|..+ |..+. ..+ .
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~--~i~~~~-~~~~~i~~~~i~lP~~dGLP~g~e~~~ 78 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHK--QLQPLN-LFPDSIVFEPLTLPPVDGLPFGAETAS 78 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhh--hhcccc-cCCCceEEEEecCCCcCCCCCcccccc
Confidence 45899999999999999999999999875 99999999886543 111111 12224777544 32111 111 1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhcccc
Q 012063 77 KAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCE 156 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 156 (471)
+........+......+.+.++++++..+|||||+|. +.|+..+|+++|||++.|+++++..++.+.++. ...
T Consensus 79 ~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~---~~~--- 151 (446)
T PLN00414 79 DLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR---AEL--- 151 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH---hhc---
Confidence 1111223344555566777777766666899999996 899999999999999999999998888776521 100
Q ss_pred ccCCCCcccCCCCCc---CccCCCC--CCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCe
Q 012063 157 VRDMEQPLKLPGFTI---PIHGRDF--PDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSI 231 (471)
Q Consensus 157 ~~~~~~~~~~p~~~~---p~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v 231 (471)
. ..+|++|. +++..+. +..+ +. ....+.+..+...+++++++|||.+||+.+.+.+++.. ++++
T Consensus 152 ----~--~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~-~~~v 220 (446)
T PLN00414 152 ----G--FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC-QRKV 220 (446)
T ss_pred ----C--CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc-CCCe
Confidence 0 11255421 1222221 1212 11 12333344556677899999999999999998887632 2379
Q ss_pred EEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCC
Q 012063 232 YPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSA 311 (471)
Q Consensus 232 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~ 311 (471)
++|||+.+..... . ....+.+|.+|||+++++|||||||||......+++.+++.+|+.++.+|+|++.....
T Consensus 221 ~~VGPl~~~~~~~--~--~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~--- 293 (446)
T PLN00414 221 LLTGPMLPEPQNK--S--GKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKG--- 293 (446)
T ss_pred EEEcccCCCcccc--c--CcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCC---
Confidence 9999997543211 0 01123569999999999999999999999999999999999999999999999986421
Q ss_pred CCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchh
Q 012063 312 SGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRL 391 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 391 (471)
.+ ...+.+|++|.++++++++++.+|+||.+||+|+++++||||||||||+||+++|||||++|+++||+.
T Consensus 294 ------~~---~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~ 364 (446)
T PLN00414 294 ------SS---TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVL 364 (446)
T ss_pred ------cc---cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHH
Confidence 00 112458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 392 NAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGE--DGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 392 na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
||+++++++|+|+.+...+++.+++++|+++++++|.++ .++++|++++++++.+. ++||++ ..+++|++++++
T Consensus 365 na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 365 ITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALEN 440 (446)
T ss_pred HHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHH
Confidence 999997559999999653224589999999999999763 37889999999999974 467744 338999999986
Q ss_pred c
Q 012063 470 Q 470 (471)
Q Consensus 470 ~ 470 (471)
.
T Consensus 441 ~ 441 (446)
T PLN00414 441 E 441 (446)
T ss_pred h
Confidence 4
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.6e-66 Score=514.92 Aligned_cols=436 Identities=30% Similarity=0.461 Sum_probs=327.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC---cchhH
Q 012063 3 QVKHHVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE---EDVKA 78 (471)
Q Consensus 3 ~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~ 78 (471)
+.++||+++|+|++||++||+.||++|++++ ||+|||++++.+.. ....... +.+++|+.+|....+ ...+.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~--~i~~~~~--~~gi~fv~lp~~~p~~~~~~~~~ 83 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLG--LIGSDPK--PDNIRFATIPNVIPSELVRAADF 83 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHh--HhhccCC--CCCEEEEECCCCCCCccccccCH
Confidence 3588999999999999999999999997532 99999999986553 1111111 236999999853211 11122
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhcccccc
Q 012063 79 EIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVR 158 (471)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 158 (471)
...+..+.....+.+.+.++++. .++||||+|.++.|+..+|+++|||++.|+++++..++.+.+.+...........
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 84 PGFLEAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 22222233344455555555432 4689999999999999999999999999999999877776665433211000000
Q ss_pred C---CCCcc-cCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEe
Q 012063 159 D---MEQPL-KLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPI 234 (471)
Q Consensus 159 ~---~~~~~-~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~v 234 (471)
. ...+. .+|++ .++...+++..+.+.....++.+.+.+....+++++++||+++||+.+.+.+.+.. +.+++.|
T Consensus 162 ~~~~~~~~~~~iPg~-~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-~~~~~~i 239 (459)
T PLN02448 162 LSESGEERVDYIPGL-SSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF-PFPVYPI 239 (459)
T ss_pred cccccCCccccCCCC-CCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc-CCceEEe
Confidence 0 01112 26777 66777788876654433445566666666777889999999999999988887643 2379999
Q ss_pred ccCcCCCCCCCccCC--CCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCC
Q 012063 235 GPIIRTVSDGELVDG--SESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSAS 312 (471)
Q Consensus 235 Gpl~~~~~~~~~~~~--~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 312 (471)
||+.+.......... ....+.+|.+||+.++++++|||||||+.....+++++++++|+.++++|||+++...
T Consensus 240 GP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~----- 314 (459)
T PLN02448 240 GPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA----- 314 (459)
T ss_pred cCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch-----
Confidence 999764211100000 0112347899999988899999999999888899999999999999999999876421
Q ss_pred CccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhh
Q 012063 313 GSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLN 392 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 392 (471)
.++.++.+ .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 315 -----------------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~n 376 (459)
T PLN02448 315 -----------------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376 (459)
T ss_pred -----------------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhh
Confidence 12322222 366778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeecCCC--CCCccCHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 393 AVILSEDLNVALRPPEY--ENGLIKREEIAKVIKGLMHG--EDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 393 a~~~~~~~G~g~~~~~~--~~~~~~~~~l~~~i~~~l~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
|+++++.+|+|+.+... +++.+++++|+++|+++|++ +++++||+||+++++.+++|+.+||||++++++|+++|+
T Consensus 377 a~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~ 456 (459)
T PLN02448 377 SKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDIS 456 (459)
T ss_pred HHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99999857888887532 12358999999999999986 358899999999999999999999999999999999998
Q ss_pred h
Q 012063 469 N 469 (471)
Q Consensus 469 ~ 469 (471)
+
T Consensus 457 ~ 457 (459)
T PLN02448 457 Q 457 (459)
T ss_pred c
Confidence 5
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=4.2e-48 Score=386.91 Aligned_cols=373 Identities=18% Similarity=0.218 Sum_probs=258.5
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC-----cchhH--
Q 012063 7 HVACM-PSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE-----EDVKA-- 78 (471)
Q Consensus 7 ~i~~~-~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~-- 78 (471)
+|+.+ |.++.+|+.-+-.|+++|++| ||+||++++........ ....+++.+.++..... ...+.
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVYYAS------HLCGNITEIDASLSVEYFKKLVKSSAVFR 94 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccccccccc------CCCCCEEEEEcCCChHHHHHHHhhhhHHH
Confidence 56644 889999999999999999886 99999998742111000 01124555544311110 00000
Q ss_pred --------H---HHHHHH-HHHhHHHH-HHHHHHhhc--CCCccEEEeCCCCccHHHHHHHh-CCceEEEecchHHHHHH
Q 012063 79 --------E---IQIVLA-IKRSLSSV-RDVFKSLVA--STHLMALVVDPFGTDVFDVAREF-YVPSYLYFLTNALSLSL 142 (471)
Q Consensus 79 --------~---~~~~~~-~~~~~~~l-~~~l~~~~~--~~~~D~VI~D~~~~~~~~~A~~l-gIP~v~~~~~~~~~~~~ 142 (471)
. ...... ...+...+ .+.+.++++ +.++|+||+|.+..|+..+|+++ ++|.|.+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 0 000001 11111111 112233344 56799999999888888899999 99987776643321110
Q ss_pred HhhccccchhccccccCCCCcccCCCCCcCccCCCCCCCc--cCcCchHHHHHH----------------HHH-------
Q 012063 143 LHYMPKLDEVISCEVRDMEQPLKLPGFTIPIHGRDFPDPL--QDRKNDAYRFMI----------------QIR------- 197 (471)
Q Consensus 143 ~~~~p~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~l~~~~--~~~~~~~~~~~~----------------~~~------- 197 (471)
...++ .|.+ |++ .|.....+...| ++|..+++.... +..
T Consensus 175 --------~~~gg------~p~~-~sy-vP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~ 238 (507)
T PHA03392 175 --------ETMGA------VSRH-PVY-YPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPT 238 (507)
T ss_pred --------Hhhcc------CCCC-Cee-eCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCC
Confidence 00010 1111 444 554444444443 566555322110 000
Q ss_pred --hhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeC
Q 012063 198 --KRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFG 275 (471)
Q Consensus 198 --~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~G 275 (471)
+..++.+.+++|+.+.++.+ ++. +.++++|||++...... .++++++.+|++.++ +++||||||
T Consensus 239 ~~~l~~~~~l~lvns~~~~d~~-----rp~--~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~~-~g~V~vS~G 304 (507)
T PHA03392 239 IRELRNRVQLLFVNVHPVFDNN-----RPV--PPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNST-NGVVYVSFG 304 (507)
T ss_pred HHHHHhCCcEEEEecCccccCC-----CCC--CCCeeeecccccCCCCC------CCCCHHHHHHHhcCC-CcEEEEECC
Confidence 01123346788888888865 333 23899999998754222 367888999999764 579999999
Q ss_pred CCc---CCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhh
Q 012063 276 SGG---TLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEV 352 (471)
Q Consensus 276 S~~---~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~ 352 (471)
|+. ..+.+.++.++++++..+++|||+++.... . ..+|+ |+.+.+|+||.+|
T Consensus 305 S~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~---------------~-~~~p~---------Nv~i~~w~Pq~~l 359 (507)
T PHA03392 305 SSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE---------------A-INLPA---------NVLTQKWFPQRAV 359 (507)
T ss_pred CCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC---------------c-ccCCC---------ceEEecCCCHHHH
Confidence 984 357788999999999999999999875322 0 13454 9999999999999
Q ss_pred hcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCch
Q 012063 353 LGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDG 432 (471)
Q Consensus 353 L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 432 (471)
|+|+++++||||||+||++||+++|||||++|+++||+.||+|+++ +|+|+.++..+ +++++|.++|+++++|
T Consensus 360 L~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~---~t~~~l~~ai~~vl~~--- 432 (507)
T PHA03392 360 LKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVT---VSAAQLVLAIVDVIEN--- 432 (507)
T ss_pred hcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccCC---cCHHHHHHHHHHHhCC---
Confidence 9999999999999999999999999999999999999999999999 99999999887 9999999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 012063 433 VIIRDRMNRLKDAAAA 448 (471)
Q Consensus 433 ~~~r~~a~~l~~~~~~ 448 (471)
++||+||+++++.++.
T Consensus 433 ~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 433 PKYRKNLKELRHLIRH 448 (507)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999986
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.9e-49 Score=403.75 Aligned_cols=370 Identities=23% Similarity=0.328 Sum_probs=219.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCC----Cc-chhH---
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNF----EE-DVKA--- 78 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~----~~-~~~~--- 78 (471)
+|+++| +++||+.+|.+|+++|++| ||+||++++.... .........+++..++.... .. ....
T Consensus 2 kvLv~p-~~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFP-MAYSHFIFMRPLAEELAER-GHNVTVLTPSPSS------SLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHHH------T------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeC-CCcCHHHHHHHHHHHHHhc-CCceEEEEeeccc------ccccccccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 577887 4889999999999999987 9999999864211 01111122344444432111 10 0000
Q ss_pred -H------HHHHHHH---HHhHHHHHHHHHHh---------hcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHH
Q 012063 79 -E------IQIVLAI---KRSLSSVRDVFKSL---------VASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALS 139 (471)
Q Consensus 79 -~------~~~~~~~---~~~~~~l~~~l~~~---------~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~ 139 (471)
. ..+...+ ...........+++ +++.++|++|+|.+..|+..+|+.++||.+.+.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~--- 150 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSST--- 150 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC---
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEeccc---
Confidence 0 0111111 11111111111111 122479999999998888899999999965432211
Q ss_pred HHHHhhccccchhccccccCCCCcccCCCCCcCccCCCCCCCc--cCcCchHHHHHH-HHH-hhccc-------------
Q 012063 140 LSLLHYMPKLDEVISCEVRDMEQPLKLPGFTIPIHGRDFPDPL--QDRKNDAYRFMI-QIR-KRYSL------------- 202 (471)
Q Consensus 140 ~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~l~~~~--~~~~~~~~~~~~-~~~-~~~~~------------- 202 (471)
......... ...+. .|++ .|.....++..| .+|..+.+..+. +.. .....
T Consensus 151 -----~~~~~~~~~------~g~p~-~psy-vP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 151 -----PMYDLSSFS------GGVPS-PPSY-VPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp -----SCSCCTCCT------SCCCT-STTS-TTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred -----ccchhhhhc------cCCCC-ChHH-hccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc
Confidence 111111000 01121 2566 666666666554 566655543322 111 11110
Q ss_pred ---------CcEEEEccccccChHHHHHhhcCCCCCCeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEE
Q 012063 203 ---------ADGILINTFMELEPGVIKALQEEPSMRSIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVS 273 (471)
Q Consensus 203 ---------~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs 273 (471)
...+++|+.+.++.+. +.. ++++++|+++.... .+++.++..|++...++++||||
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld~pr-----p~~--p~v~~vGgl~~~~~--------~~l~~~~~~~~~~~~~~~vv~vs 282 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLDFPR-----PLL--PNVVEVGGLHIKPA--------KPLPEELWNFLDSSGKKGVVYVS 282 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE----H-----HHH--CTSTTGCGC-S------------TCHHHHHHHTSTTTTTEEEEEE
T ss_pred cccHHHHHHHHHHhhhccccCcCCc-----chh--hcccccCccccccc--------cccccccchhhhccCCCCEEEEe
Confidence 0112233333333221 111 17899999876544 35678889999875568899999
Q ss_pred eCCCcCC-CHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhh
Q 012063 274 FGSGGTL-SYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEV 352 (471)
Q Consensus 274 ~GS~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~ 352 (471)
|||+... +.+..+++++++++++++|||++++... ..+|+ |+++.+|+||.+|
T Consensus 283 fGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~-----------------~~l~~---------n~~~~~W~PQ~~l 336 (500)
T PF00201_consen 283 FGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP-----------------ENLPK---------NVLIVKWLPQNDL 336 (500)
T ss_dssp -TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG-----------------CHHHT---------TEEEESS--HHHH
T ss_pred cCcccchhHHHHHHHHHHHHhhCCCccccccccccc-----------------ccccc---------eEEEeccccchhh
Confidence 9998644 4445889999999999999999976321 22343 8999999999999
Q ss_pred hcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCch
Q 012063 353 LGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDG 432 (471)
Q Consensus 353 L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 432 (471)
|+|+++++||||||+||++||+++|||||++|+++||+.||+++++ .|+|+.++..+ +|.++|.++|+++|+|
T Consensus 337 L~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~---~~~~~l~~ai~~vl~~--- 409 (500)
T PF00201_consen 337 LAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKND---LTEEELRAAIREVLEN--- 409 (500)
T ss_dssp HTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC----SHHHHHHHHHHHHHS---
T ss_pred hhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEecC---CcHHHHHHHHHHHHhh---
Confidence 9999999999999999999999999999999999999999999999 99999999887 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012063 433 VIIRDRMNRLKDAAAA 448 (471)
Q Consensus 433 ~~~r~~a~~l~~~~~~ 448 (471)
++|++||+++++.++.
T Consensus 410 ~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 410 PSYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHHHHHHHTTT-
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8999999999999875
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.4e-42 Score=342.41 Aligned_cols=372 Identities=19% Similarity=0.242 Sum_probs=239.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCc-c------hhHHHHHH
Q 012063 11 MPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEE-D------VKAEIQIV 83 (471)
Q Consensus 11 ~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~------~~~~~~~~ 83 (471)
+.+|++||++|++.||++|.++ ||+|++++++ .++..... .|+.|+.++...... . ........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~------~~~~~v~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTE------EFAERVEA--AGAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCH------HHHHHHHH--cCCEEEecCCcCccccccccccCcchHHHHH
Confidence 4689999999999999999775 9999999987 34444433 267887776432210 0 11111122
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccccCCCCc
Q 012063 84 LAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVRDMEQP 163 (471)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 163 (471)
.+.......+ +.+.+++++.+||+||+|.+++++..+|+.+|||++.+++..... ...+.... +
T Consensus 72 ~~~~~~~~~~-~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~~-----------~ 135 (392)
T TIGR01426 72 KLLDEAEDVL-PQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMVS-----------P 135 (392)
T ss_pred HHHHHHHHHH-HHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccccc-----------c
Confidence 2222222222 223344456699999999988888899999999999886543211 00000000 0
Q ss_pred ccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHh-------hc--ccCcEEEEccccccChHHHHHhhcCCCCCCeEEe
Q 012063 164 LKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRK-------RY--SLADGILINTFMELEPGVIKALQEEPSMRSIYPI 234 (471)
Q Consensus 164 ~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~v 234 (471)
.. +.+ . ................++.+.+... .+ ......+..+.+.++++ ... .+.+++++
T Consensus 136 ~~-~~~-~--~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~-~~~~~~~~ 205 (392)
T TIGR01426 136 AG-EGS-A--EEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GET-FDDSFTFV 205 (392)
T ss_pred cc-hhh-h--hhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccc-cCCCeEEE
Confidence 00 000 0 0000000000000011111111110 00 01111233333333322 111 13379999
Q ss_pred ccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCc
Q 012063 235 GPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGS 314 (471)
Q Consensus 235 Gpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
||+...... ...|+...+++++|||||||+.......+.+++++++..+.+++|..+....
T Consensus 206 Gp~~~~~~~-------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~------ 266 (392)
T TIGR01426 206 GPCIGDRKE-------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD------ 266 (392)
T ss_pred CCCCCCccc-------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC------
Confidence 998754321 1237665566889999999986666667888999999999899988865422
Q ss_pred cccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHH
Q 012063 315 FFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAV 394 (471)
Q Consensus 315 ~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 394 (471)
......+| +|+.+.+|+||.++|++++ ++|||||+||++||+++|||+|++|...||+.||+
T Consensus 267 -------~~~~~~~~---------~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~ 328 (392)
T TIGR01426 267 -------PADLGELP---------PNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTAR 328 (392)
T ss_pred -------hhHhccCC---------CCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHH
Confidence 00111123 3899999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 395 ILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 395 ~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
++++ +|+|+.+...+ +++++|.++|+++|.| ++|+++++++++.+++. + +.+...+.+.+
T Consensus 329 ~l~~-~g~g~~l~~~~---~~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~~~---~-~~~~aa~~i~~ 388 (392)
T TIGR01426 329 RIAE-LGLGRHLPPEE---VTAEKLREAVLAVLSD---PRYAERLRKMRAEIREA---G-GARRAADEIEG 388 (392)
T ss_pred HHHH-CCCEEEecccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHc---C-CHHHHHHHHHH
Confidence 9999 99999998776 8999999999999998 89999999999999862 3 43444444433
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.5e-42 Score=342.27 Aligned_cols=357 Identities=17% Similarity=0.113 Sum_probs=229.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC--cc--------
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE--ED-------- 75 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~-------- 75 (471)
|||+|+++|+.||++|+++||++|++| ||+|+|++++. ++.... ..|++|.+++..... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~------~~~~v~--~~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPE------FADLVE--AAGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHh------HHHHHH--HcCCceeeCCCCHHHHHhhhhhccccc
Confidence 699999999999999999999999875 99999999873 233333 236888877653221 00
Q ss_pred ---hhHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchh
Q 012063 76 ---VKAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEV 152 (471)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 152 (471)
..........+........+.+.+..++.+||+||+|.+.+++..+|+++|||++.+++.+.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~--------- 142 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF--------- 142 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC---------
Confidence 00111111222222222222223333457999999999888888999999999999887543210000
Q ss_pred ccccccCCCCcccCCCCCcCccCCCCCCCccCc-Cc-hHHHHHHHHHhhcccCcE-------------EEEccccccChH
Q 012063 153 ISCEVRDMEQPLKLPGFTIPIHGRDFPDPLQDR-KN-DAYRFMIQIRKRYSLADG-------------ILINTFMELEPG 217 (471)
Q Consensus 153 ~~~~~~~~~~~~~~p~~~~p~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-------------~l~~s~~~le~~ 217 (471)
+ .+. .. ........ .. .............++..| .+....+.+...
T Consensus 143 --------------~---~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 203 (401)
T cd03784 143 --------------P---PPL-GR-ANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP 203 (401)
T ss_pred --------------C---Ccc-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC
Confidence 0 011 00 00000000 00 000000011111111111 111111111110
Q ss_pred HHHHhhcCCCCCCeEEec-cCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCC-HHhHHHHHHHHHhC
Q 012063 218 VIKALQEEPSMRSIYPIG-PIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLS-YDQLEELALGLELS 295 (471)
Q Consensus 218 ~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~-~~~~~~~~~al~~~ 295 (471)
+.. .+.+..++| ++..... . ...+.++..|++. ++++|||||||+.... ...+..++++++..
T Consensus 204 -----~~~-~~~~~~~~g~~~~~~~~-~------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 204 -----PPD-WPRFDLVTGYGFRDVPY-N------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred -----CCC-ccccCcEeCCCCCCCCC-C------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 000 012455665 3332222 1 2345667788876 3679999999986644 45678899999988
Q ss_pred CCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHh
Q 012063 296 EQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIV 375 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~ 375 (471)
+.+++|+++.... ....+| +|+.+.+|+||.++|++++ +||||||+||++||++
T Consensus 269 ~~~~i~~~g~~~~---------------~~~~~~---------~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~ 322 (401)
T cd03784 269 GQRAILSLGWGGL---------------GAEDLP---------DNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALR 322 (401)
T ss_pred CCeEEEEccCccc---------------cccCCC---------CceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHH
Confidence 9999999876532 001233 3899999999999999999 9999999999999999
Q ss_pred hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 012063 376 HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAA 448 (471)
Q Consensus 376 ~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~ 448 (471)
+|||+|++|+..||+.||+++++ +|+|+.+...+ +++++|.++|++++++ .++++++++++.+++
T Consensus 323 ~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~~---~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 323 AGVPQLVVPFFGDQPFWAARVAE-LGAGPALDPRE---LTAERLAAALRRLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred cCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCCccc---CCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh
Confidence 99999999999999999999999 99999998776 8999999999999975 466677777777654
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.3e-42 Score=349.98 Aligned_cols=391 Identities=28% Similarity=0.452 Sum_probs=250.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccC----CCCeEEEEcCCCCCCcch----
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGL----PEHINHVLLPPVNFEEDV---- 76 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~~~~~~~---- 76 (471)
+.|++++++|++||++|+..||+.|+++ ||+||++++................ .....+...+. ......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPD-GLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhh-hhccchHHHH
Confidence 5799999999999999999999999886 9999999976544310000000000 00011111110 000111
Q ss_pred -hHHHHHHHHHHHhHHHHHHHHHHhhc--CCCccEEEeCCCCccHHHHHHHhC-CceEEEecchHHHHHHHhhccccchh
Q 012063 77 -KAEIQIVLAIKRSLSSVRDVFKSLVA--STHLMALVVDPFGTDVFDVAREFY-VPSYLYFLTNALSLSLLHYMPKLDEV 152 (471)
Q Consensus 77 -~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~D~VI~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~p~~~~~ 152 (471)
........+...+...+.+.+..+.. ..++|++|+|.+..|...++.... |+..++.+.++.....+.+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-- 160 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSY-- 160 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccc--
Confidence 11111223333344444443433322 234999999998667777776664 998888887776655544332220
Q ss_pred ccccccCCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHH--------------HHH-h---hc----ccCcEEEEcc
Q 012063 153 ISCEVRDMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMI--------------QIR-K---RY----SLADGILINT 210 (471)
Q Consensus 153 ~~~~~~~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~--------------~~~-~---~~----~~~~~~l~~s 210 (471)
+|....+... -...+.++..+...... ... . .. ....+++.++
T Consensus 161 -------------~p~~~~~~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 161 -------------VPSPFSLSSG--DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred -------------cCcccCcccc--ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 0111000000 11111222221111100 000 0 00 1122344454
Q ss_pred -ccccChHHHHHhhcCCCCCCeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCc--cEEEEEeCCCc---CCCHHh
Q 012063 211 -FMELEPGVIKALQEEPSMRSIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASG--SVLFVSFGSGG---TLSYDQ 284 (471)
Q Consensus 211 -~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~i~vs~GS~~---~~~~~~ 284 (471)
+..++.......++.+...++++|||+....... ....+.+|++..+.. ++|||||||+. .++.++
T Consensus 226 ~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~--------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~ 297 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ--------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQ 297 (496)
T ss_pred eEEEEccCcccCCCCCCCCCCceEECcEEecCccc--------cccccHHHHHHHhhccCCeEEEECCcccccccCCHHH
Confidence 6666655544443322234899999998873321 112567888876554 89999999997 799999
Q ss_pred HHHHHHHHHhC-CCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhh-hcCCcccccc
Q 012063 285 LEELALGLELS-EQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEV-LGHPSTGGFL 362 (471)
Q Consensus 285 ~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~-L~~~~~~~~I 362 (471)
..+++.+++.+ ++.|+|+++.... ..+++++.++ ...||+..+|+||.++ |+|+++++||
T Consensus 298 ~~~l~~~l~~~~~~~FiW~~~~~~~-----------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~Fv 359 (496)
T KOG1192|consen 298 KKELAKALESLQGVTFLWKYRPDDS-----------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFV 359 (496)
T ss_pred HHHHHHHHHhCCCceEEEEecCCcc-----------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEE
Confidence 99999999999 7788999987532 0123333322 3347888899999999 5999999999
Q ss_pred cccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 012063 363 THCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRL 442 (471)
Q Consensus 363 tHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l 442 (471)
||||||||+|++++|||||++|+++||+.||+++++ .|.|..+...+ ++.+++.+++.+++++ ++|+++++++
T Consensus 360 THgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~~---~~~~~~~~~~~~il~~---~~y~~~~~~l 432 (496)
T KOG1192|consen 360 THGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDKRD---LVSEELLEAIKEILEN---EEYKEAAKRL 432 (496)
T ss_pred ECCcccHHHHHHhcCCceecCCccccchhHHHHHHh-CCCEEEEehhh---cCcHHHHHHHHHHHcC---hHHHHHHHHH
Confidence 999999999999999999999999999999999999 77776666665 6666699999999999 8999999999
Q ss_pred HHHHH
Q 012063 443 KDAAA 447 (471)
Q Consensus 443 ~~~~~ 447 (471)
.+..+
T Consensus 433 ~~~~~ 437 (496)
T KOG1192|consen 433 SEILR 437 (496)
T ss_pred HHHHH
Confidence 99776
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-39 Score=316.36 Aligned_cols=380 Identities=19% Similarity=0.241 Sum_probs=235.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC-cch----hHH
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE-EDV----KAE 79 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~----~~~ 79 (471)
+|+|+++..|+.||++|.++||++|.++ ||+|+|++++ .+.....+. ++.|..++..+.. ... ...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~------~~~~~ve~a--g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTG------KFKEFVEAA--GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCH------HHHHHHHHh--CcceeeccccCChhhhhhhhhhcc
Confidence 5899999999999999999999999765 9999999987 444444433 3556555543221 100 011
Q ss_pred HH---HHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhcccc
Q 012063 80 IQ---IVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCE 156 (471)
Q Consensus 80 ~~---~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 156 (471)
.. ....+......+.+. +.+..+|+++.|.....+ .+++..++|++......... +|.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~----~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 138 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLEL----LRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTP------LPAAGLPLP-- 138 (406)
T ss_pred chhHHHhhhhhhhhHHHHHH----HHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccC------CcccccCcc--
Confidence 11 111222222222223 334489999988754444 78888999977644332211 111100000
Q ss_pred ccCCCCcccCCCCCcCccCCCCCCCccC--cCchHH-HHH-HHHHhhcccC---cEEEEccccccChHHHHHhhc--CCC
Q 012063 157 VRDMEQPLKLPGFTIPIHGRDFPDPLQD--RKNDAY-RFM-IQIRKRYSLA---DGILINTFMELEPGVIKALQE--EPS 227 (471)
Q Consensus 157 ~~~~~~~~~~p~~~~p~~~~~l~~~~~~--~~~~~~-~~~-~~~~~~~~~~---~~~l~~s~~~le~~~~~~~~~--~~~ 227 (471)
+..+-+. .+.+...++..+.. ...... ... .+........ ..-++..-+.++..+.+.... ...
T Consensus 139 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (406)
T COG1819 139 ------PVGIAGK-LPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRL 211 (406)
T ss_pred ------ccccccc-ccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCC
Confidence 0000000 11111111111100 000000 000 0000000000 000111111111111111000 001
Q ss_pred CCCeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCC
Q 012063 228 MRSIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPD 307 (471)
Q Consensus 228 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 307 (471)
+....++||+..... .+...|... ++++|||||||.... .++++.++++++.++.+++..++. .
T Consensus 212 p~~~~~~~~~~~~~~------------~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~ 275 (406)
T COG1819 212 PFIGPYIGPLLGEAA------------NELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A 275 (406)
T ss_pred CCCcCcccccccccc------------ccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c
Confidence 224555666554433 233445333 467999999999765 888899999999999999988866 2
Q ss_pred CCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccc
Q 012063 308 DKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYA 387 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 387 (471)
+ .....+|. |+.+.+|+||.++|++++ +||||||+|||+|||++|||+|++|...
T Consensus 276 ~--------------~~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~ 330 (406)
T COG1819 276 R--------------DTLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGA 330 (406)
T ss_pred c--------------cccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCc
Confidence 2 12245666 999999999999999999 9999999999999999999999999999
Q ss_pred cchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 012063 388 EQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHK 466 (471)
Q Consensus 388 DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (471)
||+.||.|+++ +|+|+.+.... ++++.++++|+++|++ +.|+++++++++.+++. +| .+.+.+++++
T Consensus 331 DQ~~nA~rve~-~G~G~~l~~~~---l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~ 397 (406)
T COG1819 331 DQPLNAERVEE-LGAGIALPFEE---LTEERLRAAVNEVLAD---DSYRRAAERLAEEFKEE---DG--PAKAADLLEE 397 (406)
T ss_pred chhHHHHHHHH-cCCceecCccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHH
Confidence 99999999999 99999999877 9999999999999999 99999999999999983 44 3444444444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=9.3e-25 Score=210.43 Aligned_cols=323 Identities=15% Similarity=0.149 Sum_probs=194.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHH
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAI 86 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~ 86 (471)
+|++...++-||+.|.++||++|.++ ||+|.|+++....+. .+.. ..++.+..++...... ......+...+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~e~----~l~~--~~g~~~~~~~~~~l~~-~~~~~~~~~~~ 74 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGIEK----TIIE--KENIPYYSISSGKLRR-YFDLKNIKDPF 74 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcccc----ccCc--ccCCcEEEEeccCcCC-CchHHHHHHHH
Confidence 78999999999999999999999765 999999997655431 1111 1257777665322211 11111222111
Q ss_pred HHhHHHHHHHHHHhhcCCCccEEEeCCCCc--cHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccccCCCCcc
Q 012063 87 KRSLSSVRDVFKSLVASTHLMALVVDPFGT--DVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVRDMEQPL 164 (471)
Q Consensus 87 ~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~--~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 164 (471)
... ....+.+ .++++.+||+||...... .+..+|+.+++|+++.-..
T Consensus 75 ~~~-~~~~~~~-~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n----------------------------- 123 (352)
T PRK12446 75 LVM-KGVMDAY-VRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD----------------------------- 123 (352)
T ss_pred HHH-HHHHHHH-HHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC-----------------------------
Confidence 111 1111111 223455999999865333 3457999999997763321
Q ss_pred cCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEeccCcCCCCCC
Q 012063 165 KLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPIIRTVSDG 244 (471)
Q Consensus 165 ~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~~~~ 244 (471)
..|++ .+.+. .+.++. ++.++++.. .. ++..+++++|+-.......
T Consensus 124 ~~~g~--------------------~nr~~-----~~~a~~-v~~~f~~~~----~~----~~~~k~~~tG~Pvr~~~~~ 169 (352)
T PRK12446 124 MTPGL--------------------ANKIA-----LRFASK-IFVTFEEAA----KH----LPKEKVIYTGSPVREEVLK 169 (352)
T ss_pred CCccH--------------------HHHHH-----HHhhCE-EEEEccchh----hh----CCCCCeEEECCcCCccccc
Confidence 12343 00000 111222 223343311 11 1223788999543322111
Q ss_pred CccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCH-HhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCC
Q 012063 245 ELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSY-DQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTD 323 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~-~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
.......+-+...+++++|+|..||.+...- +.+.+++..+.. +.+++|+++.+..
T Consensus 170 -------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~--------------- 226 (352)
T PRK12446 170 -------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNL--------------- 226 (352)
T ss_pred -------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchH---------------
Confidence 0011111222223456799999999865333 223444444432 3678888876421
Q ss_pred CCCCCChhhHHhhcCCCeeeccCc-c-hhhhhcCCcccccccccCchhHHHHHhhCCceeecccc-----ccchhhHHHH
Q 012063 324 PFGFLPTGFLDRTKEQGLVVPSWA-P-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY-----AEQRLNAVIL 396 (471)
Q Consensus 324 ~~~~lp~~~~~~~~~~~v~v~~~~-p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~~ 396 (471)
.+.. ... .++.+.+|+ + -.+++++++ ++|||||.+|++|++++|+|+|++|+. .||..||..+
T Consensus 227 -----~~~~-~~~--~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l 296 (352)
T PRK12446 227 -----DDSL-QNK--EGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF 296 (352)
T ss_pred -----HHHH-hhc--CCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH
Confidence 0101 111 244555776 4 457899999 999999999999999999999999985 4899999999
Q ss_pred HhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHH
Q 012063 397 SEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNR 441 (471)
Q Consensus 397 ~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~ 441 (471)
++ .|+|..+...+ ++++.|.+++.+++.|. +.+++++++
T Consensus 297 ~~-~g~~~~l~~~~---~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 297 ER-QGYASVLYEED---VTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred HH-CCCEEEcchhc---CCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 99 99999998777 99999999999999772 245544433
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=9e-22 Score=187.28 Aligned_cols=324 Identities=19% Similarity=0.206 Sum_probs=196.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCc-EEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHH
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDI-SVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVL 84 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ 84 (471)
+.|++...++-||+.|.++|+++|.++ |+ +|.++.+....+. .+... .++.++.++........... .+..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e~----~l~~~--~~~~~~~I~~~~~~~~~~~~-~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLEA----FLVKQ--YGIEFELIPSGGLRRKGSLK-LLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEeccccccee----eeccc--cCceEEEEecccccccCcHH-HHHH
Confidence 368888899999999999999999876 99 5777755433320 11111 14666666543332111111 1111
Q ss_pred --HHHHhHHHHHHHHHHhhcCCCccEEEe--CCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccccCC
Q 012063 85 --AIKRSLSSVRDVFKSLVASTHLMALVV--DPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVRDM 160 (471)
Q Consensus 85 --~~~~~~~~l~~~l~~~~~~~~~D~VI~--D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 160 (471)
.+........+.+++ .+||+||. -+.+..+..+|..+|||.++--
T Consensus 73 ~~~~~~~~~~a~~il~~----~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE--------------------------- 121 (357)
T COG0707 73 PFKLLKGVLQARKILKK----LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE--------------------------- 121 (357)
T ss_pred HHHHHHHHHHHHHHHHH----cCCCEEEecCCccccHHHHHHHhCCCCEEEEe---------------------------
Confidence 122233333444444 49999997 3444445568888999977632
Q ss_pred CCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEec-cCcC
Q 012063 161 EQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIG-PIIR 239 (471)
Q Consensus 161 ~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vG-pl~~ 239 (471)
....||. ..+...+....+..++++.+ ......++..+| |+..
T Consensus 122 --qn~~~G~--------------------------ank~~~~~a~~V~~~f~~~~--------~~~~~~~~~~tG~Pvr~ 165 (357)
T COG0707 122 --QNAVPGL--------------------------ANKILSKFAKKVASAFPKLE--------AGVKPENVVVTGIPVRP 165 (357)
T ss_pred --cCCCcch--------------------------hHHHhHHhhceeeecccccc--------ccCCCCceEEecCcccH
Confidence 1223554 11111111111223333311 111222688888 6654
Q ss_pred CCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCC-HHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccC
Q 012063 240 TVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLS-YDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDV 318 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
..... +..-....... ++++|+|..||++... .+.+.++...+.+ ..++++..+.+..
T Consensus 166 ~~~~~---------~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~---------- 224 (357)
T COG0707 166 EFEEL---------PAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL---------- 224 (357)
T ss_pred Hhhcc---------chhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH----------
Confidence 32210 11111111111 4679999999985432 2223334444433 3566666665421
Q ss_pred CCCCCCCCCCChhhHHhhcCCC-eeeccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceeecccc----ccchhh
Q 012063 319 HSKTDPFGFLPTGFLDRTKEQG-LVVPSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY----AEQRLN 392 (471)
Q Consensus 319 ~~~~~~~~~lp~~~~~~~~~~~-v~v~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~n 392 (471)
+.....+...+ +.+.+|..+ .++++-++ ++||++|++|+.|++++|+|+|.+|+. .||..|
T Consensus 225 -----------~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~N 291 (357)
T COG0707 225 -----------EELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYN 291 (357)
T ss_pred -----------HHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHH
Confidence 34444454445 777888876 56677777 999999999999999999999999984 389999
Q ss_pred HHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Q 012063 393 AVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGED-GVIIRDRMNRL 442 (471)
Q Consensus 393 a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~r~~a~~l 442 (471)
|..+++ .|+|..++..+ +|.+++.+.|.+++.+++ ...|+++++.+
T Consensus 292 A~~l~~-~gaa~~i~~~~---lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 292 AKFLEK-AGAALVIRQSE---LTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHh-CCCEEEecccc---CCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999 99999999888 999999999999998722 33444444443
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=1.9e-22 Score=193.64 Aligned_cols=305 Identities=20% Similarity=0.225 Sum_probs=182.4
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC---cchhHHHH
Q 012063 6 HHVACMPSP-GMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE---EDVKAEIQ 81 (471)
Q Consensus 6 ~~i~~~~~p-~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~~ 81 (471)
|||++...+ +.||+...+.||++| | ||+|++++...... ... + .+....++..... ...+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~------~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPE------FLK--P-RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHH------Hhc--c-ccCEEEccCceEeccCCccchHHH
Confidence 678777765 899999999999999 5 99999999652221 111 1 1233333322111 11111111
Q ss_pred HHHHH---HHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhcccccc
Q 012063 82 IVLAI---KRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVR 158 (471)
Q Consensus 82 ~~~~~---~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 158 (471)
+.... ......+.+ +.+++++.+||+||+|. .+.+..+|+..|||++.+.......
T Consensus 69 ~~~~~~~~~~~~~~~~~-~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~------------------- 127 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRR-EIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL------------------- 127 (318)
T ss_pred HHHHHHhhHHHHHHHHH-HHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc-------------------
Confidence 11111 111112222 23344566999999996 4556679999999988766432211
Q ss_pred CCCCcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEeccCc
Q 012063 159 DMEQPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPII 238 (471)
Q Consensus 159 ~~~~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~ 238 (471)
.+.. .++. .+.....+..+.... ........+.-+++ .... ...++.++||+.
T Consensus 128 -------~~~~-------~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~---------~~~~~~~~~p~~ 180 (318)
T PF13528_consen 128 -------HPNF-------WLPW--DQDFGRLIERYIDRY-HFPPADRRLALSFY-PPLP---------PFFRVPFVGPII 180 (318)
T ss_pred -------cccC-------Ccch--hhhHHHHHHHhhhhc-cCCcccceecCCcc-cccc---------ccccccccCchh
Confidence 0000 0000 000001111111100 12222233333332 1100 111566788877
Q ss_pred CCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhCC-CceEEEEecCCCCCCCCcccc
Q 012063 239 RTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELSE-QQFLWVVKSPDDKSASGSFFD 317 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~ 317 (471)
...... ... .+++.|+|+||..... .++++++..+ .++++. +....
T Consensus 181 ~~~~~~---------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~--------- 227 (318)
T PF13528_consen 181 RPEIRE---------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA--------- 227 (318)
T ss_pred cccccc---------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc---------
Confidence 544322 001 1345899999986432 6667777776 455544 43321
Q ss_pred CCCCCCCCCCCChhhHHhhcCCCeeeccCc--chhhhhcCCcccccccccCchhHHHHHhhCCceeeccc--cccchhhH
Q 012063 318 VHSKTDPFGFLPTGFLDRTKEQGLVVPSWA--PQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPL--YAEQRLNA 393 (471)
Q Consensus 318 ~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~--pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na 393 (471)
. ...+|+.+..|. ...++|+.++ ++|||||+||++|++++|+|+|++|. ..+|..||
T Consensus 228 --------~---------~~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a 288 (318)
T PF13528_consen 228 --------D---------PRPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYNA 288 (318)
T ss_pred --------c---------ccCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHH
Confidence 0 113388888876 4577899999 99999999999999999999999999 78999999
Q ss_pred HHHHhhhcceeecCCCCCCccCHHHHHHHHHHH
Q 012063 394 VILSEDLNVALRPPEYENGLIKREEIAKVIKGL 426 (471)
Q Consensus 394 ~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~ 426 (471)
+++++ .|+|+.++.++ ++++.|+++|+++
T Consensus 289 ~~l~~-~G~~~~~~~~~---~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 289 RKLEE-LGLGIVLSQED---LTPERLAEFLERL 317 (318)
T ss_pred HHHHH-CCCeEEccccc---CCHHHHHHHHhcC
Confidence 99999 99999998877 9999999999764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.87 E-value=6e-20 Score=175.93 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=70.1
Q ss_pred CeeeccCcc--hhhhhcCCcccccccccCchhHHHHHhhCCceeeccccc--cchhhHHHHHhhhcceeecCCCCCCccC
Q 012063 340 GLVVPSWAP--QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYA--EQRLNAVILSEDLNVALRPPEYENGLIK 415 (471)
Q Consensus 340 ~v~v~~~~p--q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 415 (471)
|+.+.+|.| ..+.|+.++ ++|||||++|++||+++|+|+|++|..+ ||..||+.+++ .|+|+.++..+ +
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~---~- 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKE---L- 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhh---H-
Confidence 888889997 456677888 9999999999999999999999999965 89999999999 99999998765 4
Q ss_pred HHHHHHHHHHHhCC
Q 012063 416 REEIAKVIKGLMHG 429 (471)
Q Consensus 416 ~~~l~~~i~~~l~~ 429 (471)
++.+++.+++++
T Consensus 303 --~~~~~~~~~~~~ 314 (321)
T TIGR00661 303 --RLLEAILDIRNM 314 (321)
T ss_pred --HHHHHHHhcccc
Confidence 566666677776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=6.6e-18 Score=164.85 Aligned_cols=342 Identities=16% Similarity=0.126 Sum_probs=196.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC--cchhHHHHHH
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE--EDVKAEIQIV 83 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~~~~~~~~~ 83 (471)
|+|+++..+..||...++.|++.|.++ ||+|++++.+.... ..... ..+++++.++..... ..........
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~----~~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~~~ 74 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGME----ARLVP--KAGIEFHFIPSGGLRRKGSLANLKAPF 74 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCchh----hhccc--cCCCcEEEEeccCcCCCChHHHHHHHH
Confidence 789999988899999999999999876 99999998753211 01111 125566555432211 1111111111
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCccEEEeCCC--CccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccccCCC
Q 012063 84 LAIKRSLSSVRDVFKSLVASTHLMALVVDPF--GTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVRDME 161 (471)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 161 (471)
. +......+. +++++.+||+|++... ...+..+++..++|.+.....
T Consensus 75 ~-~~~~~~~~~----~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-------------------------- 123 (357)
T PRK00726 75 K-LLKGVLQAR----KILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-------------------------- 123 (357)
T ss_pred H-HHHHHHHHH----HHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC--------------------------
Confidence 1 111222222 3344559999998852 233345677789997642100
Q ss_pred CcccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEeccCcCCC
Q 012063 162 QPLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPIIRTV 241 (471)
Q Consensus 162 ~~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~ 241 (471)
..++. .+.+. .+.++.++..+ ++. .. . .++.++.++|+.....
T Consensus 124 ---~~~~~--------------------~~r~~-----~~~~d~ii~~~-~~~---~~---~--~~~~~i~vi~n~v~~~ 166 (357)
T PRK00726 124 ---AVPGL--------------------ANKLL-----ARFAKKVATAF-PGA---FP---E--FFKPKAVVTGNPVREE 166 (357)
T ss_pred ---CCccH--------------------HHHHH-----HHHhchheECc-hhh---hh---c--cCCCCEEEECCCCChH
Confidence 00110 00000 11223333222 111 00 0 1334888888654432
Q ss_pred CCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHH-HHHHHHhCCC--ceEEEEecCCCCCCCCccccC
Q 012063 242 SDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEE-LALGLELSEQ--QFLWVVKSPDDKSASGSFFDV 318 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~ 318 (471)
... ....-.. +...++.++|++..|+.. ...+.. +.+++++... .++|.++.+..
T Consensus 167 ~~~--------~~~~~~~-~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---------- 224 (357)
T PRK00726 167 ILA--------LAAPPAR-LAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDL---------- 224 (357)
T ss_pred hhc--------ccchhhh-ccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcH----------
Confidence 111 0000011 111223446776555532 222222 3355554433 34455554321
Q ss_pred CCCCCCCCCCChhhHHhhc-CCCeeeccCcc-hhhhhcCCcccccccccCchhHHHHHhhCCceeeccc----cccchhh
Q 012063 319 HSKTDPFGFLPTGFLDRTK-EQGLVVPSWAP-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPL----YAEQRLN 392 (471)
Q Consensus 319 ~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~n 392 (471)
+.+.+... +-++.+.+|+. ..++++.++ ++|+|+|.++++||+++|+|+|++|. .+||..|
T Consensus 225 -----------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 291 (357)
T PRK00726 225 -----------EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTAN 291 (357)
T ss_pred -----------HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHH
Confidence 22222222 11377788884 478899999 99999999999999999999999997 3689999
Q ss_pred HHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 393 AVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 393 a~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+..+.+ .|.|+.+..++ ++++++.++|.+++++ +++++++.+-++... +.++.++.++.+.+.++
T Consensus 292 ~~~i~~-~~~g~~~~~~~---~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 292 ARALVD-AGAALLIPQSD---LTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHH-CCCEEEEEccc---CCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 999999 89999998776 7899999999999998 677655555444332 34555666666665543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=1e-16 Score=156.08 Aligned_cols=318 Identities=16% Similarity=0.117 Sum_probs=182.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHH
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAI 86 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~ 86 (471)
+|++......||+...+.|++.|.++ ||+|++++....... .... ..+++++.++....... .....+....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 72 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLEA----RLVP--KAGIPLHTIPVGGLRRK-GSLKKLKAPF 72 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcchh----hccc--ccCCceEEEEecCcCCC-ChHHHHHHHH
Confidence 58888899999999999999999775 999999987533210 1101 12455555543211111 1111111111
Q ss_pred --HHhHHHHHHHHHHhhcCCCccEEEeCCC--CccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhccccccCCCC
Q 012063 87 --KRSLSSVRDVFKSLVASTHLMALVVDPF--GTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCEVRDMEQ 162 (471)
Q Consensus 87 --~~~~~~l~~~l~~~~~~~~~D~VI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 162 (471)
......+.+. +++.+||+|++... ...+..+++..++|++.....
T Consensus 73 ~~~~~~~~~~~~----i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~--------------------------- 121 (350)
T cd03785 73 KLLKGVLQARKI----LKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN--------------------------- 121 (350)
T ss_pred HHHHHHHHHHHH----HHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC---------------------------
Confidence 1122223333 34459999997642 333446788889997642100
Q ss_pred cccCCCCCcCccCCCCCCCccCcCchHHHHHHHHHhhcccCcEEEEccccccChHHHHHhhcCCCCCCeEEeccCcCCCC
Q 012063 163 PLKLPGFTIPIHGRDFPDPLQDRKNDAYRFMIQIRKRYSLADGILINTFMELEPGVIKALQEEPSMRSIYPIGPIIRTVS 242 (471)
Q Consensus 163 ~~~~p~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~v~~vGpl~~~~~ 242 (471)
..++. .+.+ ..+.++.++..+-...+. .++.++.++|+......
T Consensus 122 --~~~~~--------------------~~~~-----~~~~~~~vi~~s~~~~~~---------~~~~~~~~i~n~v~~~~ 165 (350)
T cd03785 122 --AVPGL--------------------ANRL-----LARFADRVALSFPETAKY---------FPKDKAVVTGNPVREEI 165 (350)
T ss_pred --CCccH--------------------HHHH-----HHHhhCEEEEcchhhhhc---------CCCCcEEEECCCCchHH
Confidence 00111 0000 112245555443222221 12337888886443221
Q ss_pred CCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCH-HhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCC
Q 012063 243 DGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSY-DQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSK 321 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~-~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
.. ..+ . ...+...+++++|++..|+...... +.+.+++..+...+..+++.++.+..
T Consensus 166 ~~-------~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~------------- 223 (350)
T cd03785 166 LA-------LDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL------------- 223 (350)
T ss_pred hh-------hhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH-------------
Confidence 11 000 1 2222222334466666666532211 12233344443223344555554311
Q ss_pred CCCCCCCChhhHHhhc--CCCeeeccCc-chhhhhcCCcccccccccCchhHHHHHhhCCceeeccc----cccchhhHH
Q 012063 322 TDPFGFLPTGFLDRTK--EQGLVVPSWA-PQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPL----YAEQRLNAV 394 (471)
Q Consensus 322 ~~~~~~lp~~~~~~~~--~~~v~v~~~~-pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~ 394 (471)
+.+.+... ..|+.+.+|+ ...++|+.++ ++|+++|.++++||+++|+|+|++|. ..+|..|+.
T Consensus 224 --------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~ 293 (350)
T cd03785 224 --------EEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANAR 293 (350)
T ss_pred --------HHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHH
Confidence 22222221 3588888987 4577898899 99999999999999999999999986 357889999
Q ss_pred HHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHH
Q 012063 395 ILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDR 438 (471)
Q Consensus 395 ~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~ 438 (471)
.+.+ .|.|+.++..+ .+.+++.++|++++.+ ++.+++
T Consensus 294 ~l~~-~g~g~~v~~~~---~~~~~l~~~i~~ll~~---~~~~~~ 330 (350)
T cd03785 294 ALVK-AGAAVLIPQEE---LTPERLAAALLELLSD---PERLKA 330 (350)
T ss_pred HHHh-CCCEEEEecCC---CCHHHHHHHHHHHhcC---HHHHHH
Confidence 9999 89999988654 6899999999999987 544443
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.71 E-value=1.9e-15 Score=147.96 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=81.6
Q ss_pred hhhhhcCCcccccccccCchhHHHHHhhCCceeec----cccc---------cchhhHHHHHhhhcceeecCCCCCCccC
Q 012063 349 QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW----PLYA---------EQRLNAVILSEDLNVALRPPEYENGLIK 415 (471)
Q Consensus 349 q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~----P~~~---------DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 415 (471)
...+++.++ ++|+-+|..|+ |++++|+|+|++ |+.. +|..|+..++. .++...+...+ +|
T Consensus 261 ~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~---~~ 333 (385)
T TIGR00215 261 ARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEE---CT 333 (385)
T ss_pred HHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCC---CC
Confidence 356788888 99999999887 999999999999 8753 28889999999 89999987776 99
Q ss_pred HHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 416 REEIAKVIKGLMHGE-DGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 416 ~~~l~~~i~~~l~~~-~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
++.|.+.+.++|.|. ...+++++.++--+.+++...+.|.+++..+.++
T Consensus 334 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 334 PHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 999999999999983 0004444443333333333345677777766554
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.69 E-value=1.4e-14 Score=140.93 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=70.4
Q ss_pred chhhhhcCCcccccccccCchhHHHHHhhCCceeecccc---ccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHH
Q 012063 348 PQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY---AEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIK 424 (471)
Q Consensus 348 pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~ 424 (471)
.-.++++.++ ++|+++|.++++||+++|+|+|++|.. .+|..|+..+++ .|.|..+...+ .+++++.++++
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~---~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKE---LLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEeccc---CCHHHHHHHHH
Confidence 4577888999 999999988999999999999999873 467889989998 89999887765 78999999999
Q ss_pred HHhCCCchHHHHHHH
Q 012063 425 GLMHGEDGVIIRDRM 439 (471)
Q Consensus 425 ~~l~~~~~~~~r~~a 439 (471)
++++| ++.+++.
T Consensus 317 ~ll~~---~~~~~~~ 328 (348)
T TIGR01133 317 KLLLD---PANLEAM 328 (348)
T ss_pred HHHcC---HHHHHHH
Confidence 99987 6555443
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.67 E-value=3.6e-14 Score=128.89 Aligned_cols=331 Identities=17% Similarity=0.188 Sum_probs=193.4
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcc-----h
Q 012063 5 KHHVACMPS--PGMGHLIPHVELAKQLVLR-HDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEED-----V 76 (471)
Q Consensus 5 ~~~i~~~~~--p~~GH~~P~l~La~~L~~r-~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~ 76 (471)
.+||+|++. .+-||+.-...+|.+|++. .|.+|+++++..... . -..+.+++|+.+|......+ .
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~--~-----F~~~~gVd~V~LPsl~k~~~G~~~~~ 81 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAG--G-----FPGPAGVDFVKLPSLIKGDNGEYGLV 81 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccC--C-----CCCcccCceEecCceEecCCCceeee
Confidence 459999998 6779999999999999874 399999999642222 0 11345899999986543210 0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecchHHHHHHHhhccccchhcccc
Q 012063 77 KAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTNALSLSLLHYMPKLDEVISCE 156 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 156 (471)
+.-.....+.......+.... +..+||++|+|.+-++.. .++ .|. .. +.. .
T Consensus 82 d~~~~l~e~~~~Rs~lil~t~----~~fkPDi~IVd~~P~Glr---~EL-~pt--------L~---yl~------~---- 132 (400)
T COG4671 82 DLDGDLEETKKLRSQLILSTA----ETFKPDIFIVDKFPFGLR---FEL-LPT--------LE---YLK------T---- 132 (400)
T ss_pred ecCCCHHHHHHHHHHHHHHHH----HhcCCCEEEEeccccchh---hhh-hHH--------HH---HHh------h----
Confidence 000112222222223333333 445999999998655421 111 110 00 000 0
Q ss_pred ccCCCCcccCCCCCcC-ccCCCCCCCccCcCc-hHHHHHHHHHhhcccCcEEEEccccccCh---HH--HHHhhcCCCCC
Q 012063 157 VRDMEQPLKLPGFTIP-IHGRDFPDPLQDRKN-DAYRFMIQIRKRYSLADGILINTFMELEP---GV--IKALQEEPSMR 229 (471)
Q Consensus 157 ~~~~~~~~~~p~~~~p-~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~s~~~le~---~~--~~~~~~~~~~~ 229 (471)
.+- .+ +-.+++.+....... +..+..++..++ ..+.+++-..+++-. .+ ....+ .
T Consensus 133 ----------~~t-~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r--~yD~V~v~GdP~f~d~~~~~~~~~~i~-----~ 194 (400)
T COG4671 133 ----------TGT-RLVLGLRSIRDIPQELEADWRRAETVRLINR--FYDLVLVYGDPDFYDPLTEFPFAPAIR-----A 194 (400)
T ss_pred ----------cCC-cceeehHhhhhchhhhccchhhhHHHHHHHH--hheEEEEecCccccChhhcCCccHhhh-----h
Confidence 000 00 111111111111111 111111122222 234555544444322 21 11111 1
Q ss_pred CeEEeccCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHHHHHHHhC-CCceEEEEecCCC
Q 012063 230 SIYPIGPIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEELALGLELS-EQQFLWVVKSPDD 308 (471)
Q Consensus 230 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~ 308 (471)
+++|+|.+-...+.. . ..|... +++--|+||-|-- ..+.+.+...+.|.... +..-.|.+-.+..
T Consensus 195 k~~ytG~vq~~~~~~-------~-----~p~~~~-pE~~~Ilvs~GGG-~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~ 260 (400)
T COG4671 195 KMRYTGFVQRSLPHL-------P-----LPPHEA-PEGFDILVSVGGG-ADGAELIETALAAAQLLAGLNHKWLIVTGPF 260 (400)
T ss_pred heeEeEEeeccCcCC-------C-----CCCcCC-CccceEEEecCCC-hhhHHHHHHHHHHhhhCCCCCcceEEEeCCC
Confidence 899999982211110 0 111111 3345799988873 34667777777666543 3332465544332
Q ss_pred CCCCCccccCCCCCCCCCCCChhhHHhh-----cCCCeeeccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceee
Q 012063 309 KSASGSFFDVHSKTDPFGFLPTGFLDRT-----KEQGLVVPSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIA 382 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~v~v~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 382 (471)
+|+....+. +.+++.+..|-.+ ..++..++ .+|+-||+|||+|-|++|||.|+
T Consensus 261 -------------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLi 319 (400)
T COG4671 261 -------------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALI 319 (400)
T ss_pred -------------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceEE
Confidence 665444322 3368888888765 77888888 99999999999999999999999
Q ss_pred ccccc---cchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhC
Q 012063 383 WPLYA---EQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 383 ~P~~~---DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 428 (471)
+|... +|-.-|.|+++ +|+.=.+.+++ +++..++++|...++
T Consensus 320 vPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~---lt~~~La~al~~~l~ 364 (400)
T COG4671 320 VPRAAPREEQLIRAQRLEE-LGLVDVLLPEN---LTPQNLADALKAALA 364 (400)
T ss_pred eccCCCcHHHHHHHHHHHh-cCcceeeCccc---CChHHHHHHHHhccc
Confidence 99964 89999999999 99998888887 999999999998887
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=2.2e-14 Score=141.28 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=110.0
Q ss_pred CccEEEEEeCCCcCCCHHhHHHHHHHHHhCC-CceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhh--cCCCee
Q 012063 266 SGSVLFVSFGSGGTLSYDQLEELALGLELSE-QQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRT--KEQGLV 342 (471)
Q Consensus 266 ~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~ 342 (471)
++++|++..|+.... ..+..+++++...+ .+++++.+.+.. +-+.+.+.. .+.++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~-------------------~~~~l~~~~~~~~~~v~ 259 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA-------------------LKQSLEDLQETNPDALK 259 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH-------------------HHHHHHHHHhcCCCcEE
Confidence 355788877876432 23566777776543 455555543210 112222211 124788
Q ss_pred eccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceeec-cccccchhhHHHHHhhhcceeecCCCCCCccCHHHHH
Q 012063 343 VPSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW-PLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIA 420 (471)
Q Consensus 343 v~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~ 420 (471)
+.+|+++ .+++..++ ++|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++ .|+|+.. -+.+++.
T Consensus 260 ~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~-------~~~~~l~ 329 (380)
T PRK13609 260 VFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI-------RDDEEVF 329 (380)
T ss_pred EEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE-------CCHHHHH
Confidence 9999987 47899999 899999988899999999999985 677778889999988 8998864 3589999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 421 KVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 421 ~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
++|.++++| ++.+++.++ ..++.. ...+.++.++.+++.+.
T Consensus 330 ~~i~~ll~~---~~~~~~m~~---~~~~~~-~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 330 AKTEALLQD---DMKLLQMKE---AMKSLY-LPEPADHIVDDILAENH 370 (380)
T ss_pred HHHHHHHCC---HHHHHHHHH---HHHHhC-CCchHHHHHHHHHHhhh
Confidence 999999988 555443332 332221 23455666666655543
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.57 E-value=2.5e-13 Score=126.86 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=77.2
Q ss_pred cEEEEEeCCCcCCCHHhHHHHHHHHHhCC--CceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhc-CCCeeec
Q 012063 268 SVLFVSFGSGGTLSYDQLEELALGLELSE--QQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTK-EQGLVVP 344 (471)
Q Consensus 268 ~~i~vs~GS~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~ 344 (471)
+.|+|+||.... ......++++|.... .++.+++|.+.. ..+.+.+... .+|+.+.
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~-------------------~~~~l~~~~~~~~~i~~~ 229 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP-------------------NLDELKKFAKEYPNIILF 229 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc-------------------CHHHHHHHHHhCCCEEEE
Confidence 579999997543 224456777776543 456666665422 1233333222 3488899
Q ss_pred cCcchh-hhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHH
Q 012063 345 SWAPQV-EVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVI 395 (471)
Q Consensus 345 ~~~pq~-~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 395 (471)
.|+++. +++..++ ++||+|| +|++|+++.|+|+|++|+..+|..||+.
T Consensus 230 ~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 230 IDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred eCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999984 8999999 9999999 9999999999999999999999999875
No 39
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.56 E-value=3.6e-16 Score=134.98 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=96.1
Q ss_pred EEEEEeCCCcCC-CHHhHHHHHHHHHhC--CCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhc--CCCeee
Q 012063 269 VLFVSFGSGGTL-SYDQLEELALGLELS--EQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTK--EQGLVV 343 (471)
Q Consensus 269 ~i~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~v 343 (471)
+|+|+.||.... -.+.+..+...+... ..+++|.+|.... ......+. +.++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~---------------------~~~~~~~~~~~~~v~~ 59 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY---------------------EELKIKVENFNPNVKV 59 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC---------------------HHHCCCHCCTTCCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH---------------------HHHHHHHhccCCcEEE
Confidence 589999986432 112222333333332 3577777776422 11111111 148889
Q ss_pred ccCcc-hhhhhcCCcccccccccCchhHHHHHhhCCceeeccccc----cchhhHHHHHhhhcceeecCCCCCCccCHHH
Q 012063 344 PSWAP-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYA----EQRLNAVILSEDLNVALRPPEYENGLIKREE 418 (471)
Q Consensus 344 ~~~~p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~ 418 (471)
.+|.+ ..+++..++ ++|||||.||++|++++|+|+|++|... +|..||..+++ .|+|+.+.... .+.++
T Consensus 60 ~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~---~~~~~ 133 (167)
T PF04101_consen 60 FGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESE---LNPEE 133 (167)
T ss_dssp ECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC----SCCC
T ss_pred EechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCccc---CCHHH
Confidence 99999 789999999 9999999999999999999999999998 99999999999 99999998776 78999
Q ss_pred HHHHHHHHhCC
Q 012063 419 IAKVIKGLMHG 429 (471)
Q Consensus 419 l~~~i~~~l~~ 429 (471)
|.++|.+++.+
T Consensus 134 L~~~i~~l~~~ 144 (167)
T PF04101_consen 134 LAEAIEELLSD 144 (167)
T ss_dssp HHHHHHCHCCC
T ss_pred HHHHHHHHHcC
Confidence 99999999987
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.56 E-value=2.3e-12 Score=126.87 Aligned_cols=164 Identities=13% Similarity=0.179 Sum_probs=107.7
Q ss_pred CccEEEEEeCCCcCCCHHhHHHHHHHHHhC--CCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhh-cCCCee
Q 012063 266 SGSVLFVSFGSGGTLSYDQLEELALGLELS--EQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRT-KEQGLV 342 (471)
Q Consensus 266 ~~~~i~vs~GS~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~ 342 (471)
++++|++..|+... ...+..+++++... +.+++++.+.+.. +-+.+.+.. ...++.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~-------------------l~~~l~~~~~~~~~v~ 259 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE-------------------LKRSLTAKFKSNENVL 259 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH-------------------HHHHHHHHhccCCCeE
Confidence 45688888898752 23355555554322 2355555443211 112233222 234788
Q ss_pred eccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceeec-cccccchhhHHHHHhhhcceeecCCCCCCccCHHHHH
Q 012063 343 VPSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW-PLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIA 420 (471)
Q Consensus 343 v~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~ 420 (471)
+.+|..+ .++++.++ ++|+..|..|+.||+++|+|+|++ |..++|..|+..+++ .|+|+... +.+++.
T Consensus 260 ~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~ 329 (391)
T PRK13608 260 ILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAI 329 (391)
T ss_pred EEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHH
Confidence 8899876 46888899 999998888999999999999998 777777899999999 99998753 588999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 012063 421 KVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKW 467 (471)
Q Consensus 421 ~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (471)
++|.++++| ++.++ ++++.+++. ....+.++.++.+++.+
T Consensus 330 ~~i~~ll~~---~~~~~---~m~~~~~~~-~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 330 KIVASLTNG---NEQLT---NMISTMEQD-KIKYATQTICRDLLDLI 369 (391)
T ss_pred HHHHHHhcC---HHHHH---HHHHHHHHh-cCCCCHHHHHHHHHHHh
Confidence 999999987 43332 333333332 12345555555554444
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.55 E-value=6.6e-13 Score=130.78 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=68.1
Q ss_pred hhhhcCCcccccccccCchhHHHHHhhCCceeeccccc--------cchhh-----HHHHHhhhcceeecCCCCCCccCH
Q 012063 350 VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYA--------EQRLN-----AVILSEDLNVALRPPEYENGLIKR 416 (471)
Q Consensus 350 ~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--------DQ~~n-----a~~~~~~~G~g~~~~~~~~~~~~~ 416 (471)
..+++.++ ++|+.+|.+++ ||+++|+|+|+.|-.. .|..| +..+++ .+++..+...+ .++
T Consensus 256 ~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~---~~~ 328 (380)
T PRK00025 256 REAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEE---ATP 328 (380)
T ss_pred HHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCC---CCH
Confidence 66788888 99999998877 9999999999985432 22222 122233 23333344344 789
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 417 EEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 417 ~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+++.+++.++++| ++.+++..+-.+.+.+.. ..|++++.++.+.+.+.
T Consensus 329 ~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 329 EKLARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 9999999999998 555544333333333322 34666666666655443
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=6.4e-11 Score=116.49 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCeeeccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceeeccccccch-hhHHHHHhhhcceeecCCCCCCccCH
Q 012063 339 QGLVVPSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQR-LNAVILSEDLNVALRPPEYENGLIKR 416 (471)
Q Consensus 339 ~~v~v~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~~~~~~G~g~~~~~~~~~~~~~ 416 (471)
.++.+.+|+++ .++++.++ ++|+.+|-+|++||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ -++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec-------CCH
Confidence 46788899886 67777788 9999999999999999999999998766675 68988988 8999865 268
Q ss_pred HHHHHHHHHHhCC
Q 012063 417 EEIAKVIKGLMHG 429 (471)
Q Consensus 417 ~~l~~~i~~~l~~ 429 (471)
+++.++|.+++.+
T Consensus 335 ~~la~~i~~ll~~ 347 (382)
T PLN02605 335 KEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999976
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.38 E-value=9.2e-11 Score=115.08 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=75.1
Q ss_pred eeeccCc-chhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhh----cceeecCCCCCCccC
Q 012063 341 LVVPSWA-PQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDL----NVALRPPEYENGLIK 415 (471)
Q Consensus 341 v~v~~~~-pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~----G~g~~~~~~~~~~~~ 415 (471)
+.+..+. .-.++++.++ ++|+-+|..| .|+...|+|+|++|+-..|. |+...++ . |.++.+... +
T Consensus 281 ~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~~-----~ 350 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLASK-----N 350 (396)
T ss_pred eEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCCC-----C
Confidence 4444444 3467888899 9999999766 99999999999999877776 9877766 4 777776543 4
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHH-HHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 416 REEIAKVIKGLMHGEDGVIIRDRMN-RLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 416 ~~~l~~~i~~~l~~~~~~~~r~~a~-~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
.+.+.+++.++++| ++.+++.. +.++.+ ..++++++.++.+.
T Consensus 351 ~~~l~~~l~~ll~d---~~~~~~~~~~~~~~l----g~~~a~~~ia~~i~ 393 (396)
T TIGR03492 351 PEQAAQVVRQLLAD---PELLERCRRNGQERM----GPPGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHHHcC---HHHHHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence 69999999999988 66554444 233322 23455555444443
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.27 E-value=1.4e-11 Score=102.96 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=76.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCC-CCCcchhHHHHHHHHH
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPV-NFEEDVKAEIQIVLAI 86 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~~~~~~~~~~~ 86 (471)
|+|++.|+.||++|+++||++|.+| ||+|++++++ .++.... ..|++|.+++.. ...........+....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~------~~~~~v~--~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPP------DFRERVE--AAGLEFVPIPGDSRLPRSLEPLANLRRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETG------GGHHHHH--HTT-EEEESSSCGGGGHHHHHHHHHHCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecc------cceeccc--ccCceEEEecCCcCcCcccchhhhhhhHH
Confidence 7899999999999999999999775 9999999987 4444443 347999998776 2111011111111111
Q ss_pred H--HhHHHHHHHHHHhh--------cCCCccEEEeCCCCccHHHHHHHhCCceEEEecch
Q 012063 87 K--RSLSSVRDVFKSLV--------ASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 87 ~--~~~~~l~~~l~~~~--------~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~ 136 (471)
. .......+.+++.. .....|+++.+.....+..+|+++|||++.....+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 72 RLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred HHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 1 12222223333221 12357888888877778889999999999877654
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=1.2e-08 Score=99.34 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=76.5
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccccC----chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTHCG----WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
..++.+.+|+++.+ ++..++ ++|..+. -++++||+++|+|+|+.+..+ +...+++ .+.|......
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~~~- 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVEPG- 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcCCC-
Confidence 34888989988765 688888 7776654 378999999999999887554 4455666 6889887764
Q ss_pred CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 012063 411 NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKW 467 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (471)
+.+++.++|.+++.+ ++.+++..+-+....+ .-+.+...+++++.+
T Consensus 318 ----~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 ----DAEAFAAALAALLAD---PELRRRMAARARAEAE----RRSWEAFLDNLLEAY 363 (364)
T ss_pred ----CHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHh----hcCHHHHHHHHHHhh
Confidence 478899999999988 4544333332222221 345556666665543
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.14 E-value=1e-07 Score=96.50 Aligned_cols=127 Identities=15% Similarity=0.044 Sum_probs=80.7
Q ss_pred EEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcc
Q 012063 269 VLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAP 348 (471)
Q Consensus 269 ~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p 348 (471)
.+++..|+... ...+..++++++..+.-.+..+|.+. ..+.+.+.....++.+.+|++
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~--------------------~~~~l~~~~~~~~V~f~G~v~ 321 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGP--------------------YREELEKMFAGTPTVFTGMLQ 321 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCCh--------------------HHHHHHHHhccCCeEEeccCC
Confidence 45566687642 23356677777766432333444322 123444444556888889998
Q ss_pred hhh---hhcCCcccccccccC----chhHHHHHhhCCceeeccccccchhhHHHHHhh---hcceeecCCCCCCccCHHH
Q 012063 349 QVE---VLGHPSTGGFLTHCG----WNSTLESIVHGVPLIAWPLYAEQRLNAVILSED---LNVALRPPEYENGLIKREE 418 (471)
Q Consensus 349 q~~---~L~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~---~G~g~~~~~~~~~~~~~~~ 418 (471)
+.+ ++..++ +||.-.. -+++.||+++|+|+|+....+ . ..+.++ -+.|..++.. +.++
T Consensus 322 ~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~-~eiv~~~~~~~~G~lv~~~-----d~~~ 389 (465)
T PLN02871 322 GDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAGG----I-PDIIPPDQEGKTGFLYTPG-----DVDD 389 (465)
T ss_pred HHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCCC----c-HhhhhcCCCCCceEEeCCC-----CHHH
Confidence 654 666778 6774332 346889999999999876432 1 122221 3678777654 4899
Q ss_pred HHHHHHHHhCC
Q 012063 419 IAKVIKGLMHG 429 (471)
Q Consensus 419 l~~~i~~~l~~ 429 (471)
+.++|.++++|
T Consensus 390 la~~i~~ll~~ 400 (465)
T PLN02871 390 CVEKLETLLAD 400 (465)
T ss_pred HHHHHHHHHhC
Confidence 99999999987
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.10 E-value=1.8e-07 Score=91.65 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=58.7
Q ss_pred cCCCeeeccCcchhh---hhcCCcccccccccC---------chhHHHHHhhCCceeeccccccchhhHHHHHhhhccee
Q 012063 337 KEQGLVVPSWAPQVE---VLGHPSTGGFLTHCG---------WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVAL 404 (471)
Q Consensus 337 ~~~~v~v~~~~pq~~---~L~~~~~~~~ItHgG---------~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~ 404 (471)
..+|+.+.+++++.+ ++..++ ++|.... -+++.||+++|+|+|+.+..+.+. .+.+ .+.|.
T Consensus 273 ~~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~ 345 (394)
T cd03794 273 GLDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGL 345 (394)
T ss_pred CCCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcce
Confidence 345888889998655 567788 5654322 234799999999999988766544 3334 46777
Q ss_pred ecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 405 RPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 405 ~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
.+... +.+++.++|.+++.+
T Consensus 346 ~~~~~-----~~~~l~~~i~~~~~~ 365 (394)
T cd03794 346 VVPPG-----DPEALAAAILELLDD 365 (394)
T ss_pred EeCCC-----CHHHHHHHHHHHHhC
Confidence 77654 589999999999977
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.09 E-value=8.7e-07 Score=87.79 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccc-cCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTH-CGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItH-gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
..+|.+.+++|+.+ ++..+++-++-+. .|. .++.||+++|+|+|+... ......+.+ -..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~-~~~G~lv~~~--- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITD-GENGLLVDFF--- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhccc-CCceEEcCCC---
Confidence 45788999999765 5667773232232 233 479999999999998643 344455555 4567777654
Q ss_pred ccCHHHHHHHHHHHhCC
Q 012063 413 LIKREEIAKVIKGLMHG 429 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~~ 429 (471)
+++++.++|.+++++
T Consensus 352 --d~~~la~~i~~ll~~ 366 (396)
T cd03818 352 --DPDALAAAVIELLDD 366 (396)
T ss_pred --CHHHHHHHHHHHHhC
Confidence 599999999999988
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.08 E-value=3.3e-07 Score=88.88 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCCeeeccCcchhh---hhcCCccccccc----ccCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLT----HCGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~It----HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
..++.+.+|+++.+ ++..++ ++|. ..|+ .++.||+++|+|+|+.+.. .+...+.+ .+.|..+...
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRD-GVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcC-CCcEEEECCC
Confidence 35888999997655 477788 5553 2344 4789999999999986543 35555666 5678887764
Q ss_pred CCCccCHHHHHHHHHHHhCC
Q 012063 410 ENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~ 429 (471)
+.+++.+++.+++++
T Consensus 315 -----d~~~l~~~i~~l~~~ 329 (359)
T cd03823 315 -----DAEDLAAALERLIDD 329 (359)
T ss_pred -----CHHHHHHHHHHHHhC
Confidence 489999999999987
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.06 E-value=4.9e-07 Score=89.47 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCeeeccCcchhhh---hcCCccccccccc---C-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCC
Q 012063 339 QGLVVPSWAPQVEV---LGHPSTGGFLTHC---G-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYEN 411 (471)
Q Consensus 339 ~~v~v~~~~pq~~~---L~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 411 (471)
.++.+.+|+|+.++ +..++ +++... | -.++.||+++|+|+|+....+ ....+++ .+.|..++..
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~-~~~g~~~~~~-- 353 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVD-GVTGLLVDPR-- 353 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccC-CCCeEEeCCC--
Confidence 57889999998654 77788 666432 2 358999999999999876443 4455666 6788887654
Q ss_pred CccCHHHHHHHHHHHhCC
Q 012063 412 GLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~ 429 (471)
+.+++.++|.+++++
T Consensus 354 ---~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 ---DPEALAAALRRLLTD 368 (398)
T ss_pred ---CHHHHHHHHHHHHhC
Confidence 599999999999987
No 51
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.03 E-value=8.6e-07 Score=88.34 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCeeeccCcchh---hhhcCCcccccccccCc------hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 339 QGLVVPSWAPQV---EVLGHPSTGGFLTHCGW------NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 339 ~~v~v~~~~pq~---~~L~~~~~~~~ItHgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
+|+.+.+|+|+. ++++.+++.++.+..+. +.+.|++++|+|+|+....+.. ... +.. +.|+.++..
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~-~i~--~~G~~~~~~ 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQ-LVE--GIGVCVEPE 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHH-HHh--CCcEEeCCC
Confidence 478889999875 46778885555444332 2368999999999998654321 111 222 567777654
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
+.++++++|.+++++ +..+++ +++..++.+.+.-+.+..++++++.+.+
T Consensus 359 -----d~~~la~~i~~l~~~---~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 359 -----SVEALVAAIAALARQ---ALLRPK---LGTVAREYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred -----CHHHHHHHHHHHHhC---HHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 589999999999987 333322 2222222222344556666666655543
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.00 E-value=9.1e-07 Score=86.19 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=58.7
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccc----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
..++.+.+++|+.+ ++..++ ++|.. +.-+++.||+++|+|+|+... ...+..+++ .+.|..++..+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCCCC
Confidence 35888899998754 577788 55533 334689999999999998654 334555666 67888887553
Q ss_pred CCccCHHHHHHHHHHHhCC
Q 012063 411 NGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~ 429 (471)
. ++.+++.+++++
T Consensus 331 -----~-~~~~~i~~l~~~ 343 (374)
T cd03817 331 -----E-ALAEALLRLLQD 343 (374)
T ss_pred -----H-HHHHHHHHHHhC
Confidence 2 999999999987
No 53
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=9.7e-08 Score=84.94 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=102.5
Q ss_pred ccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhc-CCCeeecc
Q 012063 267 GSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTK-EQGLVVPS 345 (471)
Q Consensus 267 ~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~ 345 (471)
..-|+|++|-.. +....-+++..|.+.++.+-.++++... .+.++.+++. .+|+....
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p-------------------~l~~l~k~~~~~~~i~~~~ 216 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNP-------------------TLKNLRKRAEKYPNINLYI 216 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCc-------------------chhHHHHHHhhCCCeeeEe
Confidence 346999998732 3445667888787777555555654322 2344555543 34555443
Q ss_pred Ccc-hhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHH
Q 012063 346 WAP-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIK 424 (471)
Q Consensus 346 ~~p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~ 424 (471)
... -..++..++ +.|+-|| .|+.|++.-|+|.+++|+...|-.-|...+. +|+-..+.-. ++.+.....+.
T Consensus 217 ~~~dma~LMke~d--~aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~----l~~~~~~~~~~ 288 (318)
T COG3980 217 DTNDMAELMKEAD--LAISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYH----LKDLAKDYEIL 288 (318)
T ss_pred cchhHHHHHHhcc--hheeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCC----CchHHHHHHHH
Confidence 333 456888899 9999888 5999999999999999999999999999999 9998887643 56666667777
Q ss_pred HHhCCCchHHHHHHHHHHHH
Q 012063 425 GLMHGEDGVIIRDRMNRLKD 444 (471)
Q Consensus 425 ~~l~~~~~~~~r~~a~~l~~ 444 (471)
++..| ...|++.-.-.+
T Consensus 289 ~i~~d---~~~rk~l~~~~~ 305 (318)
T COG3980 289 QIQKD---YARRKNLSFGSK 305 (318)
T ss_pred HhhhC---HHHhhhhhhccc
Confidence 88887 666655444333
No 54
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.94 E-value=1.5e-06 Score=86.94 Aligned_cols=101 Identities=21% Similarity=0.177 Sum_probs=67.8
Q ss_pred hhhhcCCcccc-ccc----ccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHH
Q 012063 350 VEVLGHPSTGG-FLT----HCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIK 424 (471)
Q Consensus 350 ~~~L~~~~~~~-~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~ 424 (471)
..+++.++ + |+. =+|-.++.||+++|+|+|+-|...++......+.+ .|+++.. -+.+++.++|.
T Consensus 314 ~~~y~~aD--i~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~-------~d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIAD--IAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV-------EDAEDLAKAVT 383 (425)
T ss_pred HHHHHhCC--EEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE-------CCHHHHHHHHH
Confidence 45667777 5 442 13334699999999999999998888887777777 6777663 25899999999
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 425 GLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 425 ~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
++++| ++.+++..+-+....+ +..|..++.++.+.+
T Consensus 384 ~ll~~---~~~~~~m~~~a~~~~~--~~~~~~~~~~~~l~~ 419 (425)
T PRK05749 384 YLLTD---PDARQAYGEAGVAFLK--QNQGALQRTLQLLEP 419 (425)
T ss_pred HHhcC---HHHHHHHHHHHHHHHH--hCccHHHHHHHHHHH
Confidence 99988 5554443333333222 134565666655543
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.94 E-value=1.5e-06 Score=86.56 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCeeec-cCcchhh---hhcCCccccccc-c---cC---chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecC
Q 012063 339 QGLVVP-SWAPQVE---VLGHPSTGGFLT-H---CG---WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPP 407 (471)
Q Consensus 339 ~~v~v~-~~~pq~~---~L~~~~~~~~It-H---gG---~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~ 407 (471)
+++++. +|+|..+ +|..++ ++|. + -| -+++.||+++|+|+|+... ......+++ -+.|+.+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~-~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKH-GENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcC-CCCEEEEC
Confidence 355543 6887544 467788 5552 1 12 3369999999999999653 334455666 66787762
Q ss_pred CCCCCccCHHHHHHHHHHHhCC---Cc-hHHHHHHHHHHH
Q 012063 408 EYENGLIKREEIAKVIKGLMHG---ED-GVIIRDRMNRLK 443 (471)
Q Consensus 408 ~~~~~~~~~~~l~~~i~~~l~~---~~-~~~~r~~a~~l~ 443 (471)
+.++++++|.++++| ++ ...|.+++++..
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 489999999999987 32 444555555444
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.91 E-value=1e-05 Score=78.25 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=61.4
Q ss_pred cCCCeeeccCcchh---hhhcCCccccccc----ccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 337 KEQGLVVPSWAPQV---EVLGHPSTGGFLT----HCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 337 ~~~~v~v~~~~pq~---~~L~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
...++.+.+++++. .++..++ ++|. -|.-+++.||+++|+|+|+.+. ......+++ .+.|..++..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCCC
Confidence 34588888999754 4677788 5553 2456789999999999998765 445666666 6778877654
Q ss_pred CCCccCHHHHHHHHHHHhCC
Q 012063 410 ENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~ 429 (471)
+.+++.++|.+++++
T Consensus 327 -----~~~~l~~~i~~~~~~ 341 (374)
T cd03801 327 -----DPEALAEAILRLLDD 341 (374)
T ss_pred -----CHHHHHHHHHHHHcC
Confidence 489999999999987
No 57
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.91 E-value=3e-07 Score=90.01 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCeeeccCcch---hhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccC
Q 012063 339 QGLVVPSWAPQ---VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIK 415 (471)
Q Consensus 339 ~~v~v~~~~pq---~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 415 (471)
+++.+.+.+++ ..++.+++ ++|+-.|. .+.||+++|+|+|+++..++++. +.+ .|.++.+. -+
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d 320 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TD 320 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CC
Confidence 47777765554 45667787 88987764 47999999999999876665552 334 57776553 36
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 416 REEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 416 ~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
+++|.+++.+++++ ++.+++...-... + ..++++++.++.+..
T Consensus 321 ~~~i~~ai~~ll~~---~~~~~~~~~~~~~---~-g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 321 KENITKAAKRLLTD---PDEYKKMSNASNP---Y-GDGEASERIVEELLN 363 (365)
T ss_pred HHHHHHHHHHHHhC---hHHHHHhhhcCCC---C-cCchHHHHHHHHHHh
Confidence 89999999999987 6666554432222 2 236676666665554
No 58
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.87 E-value=1.2e-07 Score=92.72 Aligned_cols=131 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred CccEEEEEeCCCcCC-CHHhHHHHHHHHHhCCCc-eEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHH---hhc--C
Q 012063 266 SGSVLFVSFGSGGTL-SYDQLEELALGLELSEQQ-FLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLD---RTK--E 338 (471)
Q Consensus 266 ~~~~i~vs~GS~~~~-~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~--~ 338 (471)
+++.+++++|..... ....+..++++++..... +.++...... .-+.+.+ +.. .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-------------------~~~~l~~~~~~~~~~~ 257 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-------------------TRPRIREAGLEFLGHH 257 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-------------------hHHHHHHHHHhhccCC
Confidence 355788888876533 345577788888766432 4444433211 1122222 221 3
Q ss_pred CCeeeccCcchh---hhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccC
Q 012063 339 QGLVVPSWAPQV---EVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIK 415 (471)
Q Consensus 339 ~~v~v~~~~pq~---~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 415 (471)
+++.+.+..++. .++..++ +||+..| |.+.||+++|+|+|+++.. |. +..+.+ .|++..+. -+
T Consensus 258 ~~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~------~~ 323 (363)
T cd03786 258 PNVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG------TD 323 (363)
T ss_pred CCEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC------CC
Confidence 577776655443 4566788 9999999 7788999999999998632 22 334556 68777664 24
Q ss_pred HHHHHHHHHHHhCC
Q 012063 416 REEIAKVIKGLMHG 429 (471)
Q Consensus 416 ~~~l~~~i~~~l~~ 429 (471)
.+++.++|.+++++
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999987
No 59
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.86 E-value=9.9e-06 Score=78.19 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCCeeeccCcch-hhhhcCCcccccccccC----chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 338 EQGLVVPSWAPQ-VEVLGHPSTGGFLTHCG----WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 338 ~~~v~v~~~~pq-~~~L~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
..++.+.++..+ ..++..++ ++|.-+. -+++.||+++|+|+|+-+..+ +...+++ .+.|..++..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~-~~~g~~~~~~--- 314 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVID-GVNGFLVPPG--- 314 (359)
T ss_pred cceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhc-CcceEEECCC---
Confidence 346777776443 56788888 6664432 568999999999999865443 3445565 5778777654
Q ss_pred ccCHHHHHHHHHHHhCC
Q 012063 413 LIKREEIAKVIKGLMHG 429 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~~ 429 (471)
+.+++.++|.+++.+
T Consensus 315 --~~~~~~~~i~~l~~~ 329 (359)
T cd03808 315 --DAEALADAIERLIED 329 (359)
T ss_pred --CHHHHHHHHHHHHhC
Confidence 589999999999987
No 60
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.86 E-value=6.4e-06 Score=80.71 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=70.3
Q ss_pred CCeeeccCcch-hhhhcCCccccccc---c-cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 339 QGLVVPSWAPQ-VEVLGHPSTGGFLT---H-CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 339 ~~v~v~~~~pq-~~~L~~~~~~~~It---H-gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.++.+.++.++ ..++..++ ++|. . |.-.++.||+++|+|+|+... ...+..+++ -..|..++..
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~-~~~G~~~~~~---- 321 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKH-GETGFLVDVG---- 321 (371)
T ss_pred ceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcC-CCceEEcCCC----
Confidence 46777777765 56677787 5552 2 334599999999999999644 344555555 4577776654
Q ss_pred cCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 414 IKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+.+++.+++.+++++ ++.+++.++-+... +.+.-+.+..++++.+-+.
T Consensus 322 -~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 322 -DVEAMAEYALSLLED---DELWQEFSRAARNR---AAERFDSERIVPQYEALYR 369 (371)
T ss_pred -CHHHHHHHHHHHHhC---HHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHH
Confidence 589999999999987 44333322222221 1123455566666655544
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.85 E-value=6.7e-06 Score=80.20 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=71.1
Q ss_pred CCeeeccCcc-hh---hhhcCCccccccccc----CchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 339 QGLVVPSWAP-QV---EVLGHPSTGGFLTHC----GWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 339 ~~v~v~~~~p-q~---~~L~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
.++...+|++ +. .++..++ ++|.-. .-+++.||+++|+|+|+.... .....+.+ .+.|..+...
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~~~- 315 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAKPG- 315 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeCCC-
Confidence 3677888988 43 4577788 677643 247999999999999986543 22233444 4567666543
Q ss_pred CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 411 NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
+.+++.+++.+++++ ++.+++ +++..++...+.-|.++..+++++-+.+
T Consensus 316 ----~~~~~~~~l~~l~~~---~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 316 ----DPEDLAEGIEWLLAD---PDEREE---LGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred ----CHHHHHHHHHHHHhC---HHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 589999999999987 442222 2222222222345666666666665543
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.82 E-value=6.3e-06 Score=79.21 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=61.2
Q ss_pred CCeeeccCcc-hhhhhcCCcccccccccC----chhHHHHHhhCCceeeccccccchhhHHHHHhhhc-ceeecCCCCCC
Q 012063 339 QGLVVPSWAP-QVEVLGHPSTGGFLTHCG----WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLN-VALRPPEYENG 412 (471)
Q Consensus 339 ~~v~v~~~~p-q~~~L~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~ 412 (471)
.++.+.++.. -..++..++ ++|.-.. -+++.||+++|+|+|+.+..+.+. .+.. .| .|..++..
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~-~~~~g~~~~~~--- 304 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIE-DGVNGLLVPNG--- 304 (348)
T ss_pred CeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhc-cCcceEEeCCC---
Confidence 4666666633 366777888 6665432 468999999999999876544332 3444 45 78777654
Q ss_pred ccCHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 012063 413 LIKREEIAKVIKGLMHGEDGVIIRDRMNRLK 443 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~ 443 (471)
+.+++.++|.++++| ++.+++..+-+
T Consensus 305 --~~~~~~~~i~~ll~~---~~~~~~~~~~~ 330 (348)
T cd03820 305 --DVEALAEALLRLMED---EELRKRMGANA 330 (348)
T ss_pred --CHHHHHHHHHHHHcC---HHHHHHHHHHH
Confidence 589999999999998 55555444433
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.81 E-value=1.8e-05 Score=76.72 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=59.6
Q ss_pred CCCeeeccCcchh---hhhcCCccccccc--ccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 338 EQGLVVPSWAPQV---EVLGHPSTGGFLT--HCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 338 ~~~v~v~~~~pq~---~~L~~~~~~~~It--HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
..++.+.+++++. .++..+++.++.+ -|.-+++.||+++|+|+|+-+.. .....+++ .+.|......
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~~--- 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPPG--- 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECCC---
Confidence 4588899999875 5577777322222 24557899999999999986543 34455666 6667777654
Q ss_pred ccCHHHHHHHHHHHhCC
Q 012063 413 LIKREEIAKVIKGLMHG 429 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~~ 429 (471)
+.+++.++|.+++++
T Consensus 330 --~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 --DPEALAEAILRLLAD 344 (377)
T ss_pred --CHHHHHHHHHHHhcC
Confidence 599999999999987
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.80 E-value=2.6e-06 Score=82.83 Aligned_cols=130 Identities=15% Similarity=0.076 Sum_probs=81.5
Q ss_pred cEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEE-EecCCCCCCCCccccCCCCCCCCCCCChhhHH----hhcCCCee
Q 012063 268 SVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWV-VKSPDDKSASGSFFDVHSKTDPFGFLPTGFLD----RTKEQGLV 342 (471)
Q Consensus 268 ~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~----~~~~~~v~ 342 (471)
..+++..|+... ...+..++++++... ++-+. .+.+.. ...+.+ .....||.
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~-~~~l~i~G~g~~--------------------~~~~~~~~~~~~~~~~V~ 247 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALP-DAPLVIVGEGPL--------------------EAELEALAAALGLLDRVR 247 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhcc-CcEEEEEeCChh--------------------HHHHHHHHHhcCCcceEE
Confidence 356677787642 234566777777776 33332 333211 122221 12346899
Q ss_pred eccCcchh---hhhcCCccccccc---ccCch-hHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccC
Q 012063 343 VPSWAPQV---EVLGHPSTGGFLT---HCGWN-STLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIK 415 (471)
Q Consensus 343 v~~~~pq~---~~L~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 415 (471)
+.+|+|+. .++..+++.++-+ +.|.| ++.||+++|+|+|+....+....... + -+.|...+.. +
T Consensus 248 ~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~~-----d 318 (357)
T cd03795 248 FLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPPG-----D 318 (357)
T ss_pred EcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCCC-----C
Confidence 99999975 4677788433333 23444 79999999999999765554433222 2 3677776653 5
Q ss_pred HHHHHHHHHHHhCC
Q 012063 416 REEIAKVIKGLMHG 429 (471)
Q Consensus 416 ~~~l~~~i~~~l~~ 429 (471)
.+++.++|.+++++
T Consensus 319 ~~~~~~~i~~l~~~ 332 (357)
T cd03795 319 PAALAEAIRRLLED 332 (357)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999999988
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.78 E-value=4.5e-05 Score=75.82 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=58.7
Q ss_pred CCeeeccCcchh---hhhcCCccccccc---ccCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCC
Q 012063 339 QGLVVPSWAPQV---EVLGHPSTGGFLT---HCGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYEN 411 (471)
Q Consensus 339 ~~v~v~~~~pq~---~~L~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 411 (471)
+++.+.+++++. +++..++ ++|. +-|+ .+++||+++|+|+|+.... .....+++ -+.|..++..
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~~-- 353 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDGH-- 353 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCCC--
Confidence 478898999864 5688888 5553 2343 4899999999999996543 33344555 5678877654
Q ss_pred CccCHHHHHHHHHHHhCC
Q 012063 412 GLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~ 429 (471)
+.+++.++|.+++++
T Consensus 354 ---d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 354 ---DPADWADALARLLDD 368 (405)
T ss_pred ---CHHHHHHHHHHHHhC
Confidence 589999999999987
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.74 E-value=2.9e-05 Score=75.44 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=54.4
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccc-cC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTH-CG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItH-gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
.+++.+.+|+++.+ ++..+++-++-++ .| -+++.||+++|+|+|+.+..+ ....+.+ +.|....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~--~~~~~~~----- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY--GCGWVVD----- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc--CceEEeC-----
Confidence 45888999999654 4677773222222 22 468999999999999975432 2333333 6666654
Q ss_pred ccCHHHHHHHHHHHhCC
Q 012063 413 LIKREEIAKVIKGLMHG 429 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~~ 429 (471)
.+.+++.++|.+++++
T Consensus 330 -~~~~~~~~~i~~l~~~ 345 (375)
T cd03821 330 -DDVDALAAALRRALEL 345 (375)
T ss_pred -CChHHHHHHHHHHHhC
Confidence 2459999999999987
No 67
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.71 E-value=4.4e-05 Score=76.68 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=68.8
Q ss_pred CCeeeccCcchhhh---hcCC--ccccccccc---C-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 339 QGLVVPSWAPQVEV---LGHP--STGGFLTHC---G-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 339 ~~v~v~~~~pq~~~---L~~~--~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
.+|.+.+++++.++ ++.+ +.++||... | -.+++||+++|+|+|+....+ +...+.+ -..|+.++..
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~-~~~G~lv~~~ 391 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIAN-CRNGLLVDVL 391 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcC-CCcEEEeCCC
Confidence 46777788777654 4444 123777643 3 358999999999999876533 3344444 4568777764
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
+.++++++|.+++++ +..+ +++++..++.+.+.-|-+..++++.+
T Consensus 392 -----d~~~la~~i~~ll~~---~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 392 -----DLEAIASALEDALSD---SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLR 436 (439)
T ss_pred -----CHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 489999999999987 4433 33333333322233454444444443
No 68
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.71 E-value=3.3e-07 Score=87.58 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=69.8
Q ss_pred hhhhhcCCcccccccccCchhHHHHHhhCCceeeccc--cccchhhHHHHH---hhhcceeecCC----C------CCCc
Q 012063 349 QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPL--YAEQRLNAVILS---EDLNVALRPPE----Y------ENGL 413 (471)
Q Consensus 349 q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~~~---~~~G~g~~~~~----~------~~~~ 413 (471)
-.+++..++ ++|+-+|..|+ |+..+|+|||+ ++ ..-|+.||+++. . .|++-.+.. + -.+.
T Consensus 229 ~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~ 303 (347)
T PRK14089 229 THKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEF 303 (347)
T ss_pred HHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhccc
Confidence 356788889 99999999999 99999999998 43 347899999999 5 666644411 0 0123
Q ss_pred cCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 012063 414 IKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQL 463 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 463 (471)
+|++.|.+++.+ ... +.+++..+++++.+. +|++++..+.+
T Consensus 304 ~t~~~la~~i~~-~~~---~~~~~~~~~l~~~l~-----~~a~~~~A~~i 344 (347)
T PRK14089 304 VTVENLLKAYKE-MDR---EKFFKKSKELREYLK-----HGSAKNVAKIL 344 (347)
T ss_pred CCHHHHHHHHHH-HHH---HHHHHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 899999999977 222 456666666666552 25555554443
No 69
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.69 E-value=1.9e-05 Score=77.25 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=60.2
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccc----------cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhccee
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTH----------CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVAL 404 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItH----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~ 404 (471)
..++.+.+++|+.+ ++..++ ++|.- |--+++.||+++|+|+|+-+..+ +...+.+ .+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~-~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVED-GETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheec-CCeeE
Confidence 35788889998754 477788 55532 22468999999999999876543 5555666 67888
Q ss_pred ecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 405 RPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 405 ~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
.++.. +.+++.++|.+++++
T Consensus 317 ~~~~~-----d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPEG-----DVAALAAALGRLLAD 336 (367)
T ss_pred EECCC-----CHHHHHHHHHHHHcC
Confidence 77654 589999999999987
No 70
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.68 E-value=7.2e-05 Score=73.91 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=57.0
Q ss_pred CCCeeeccCcchh---hhhcCCcccccccc---cC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 338 EQGLVVPSWAPQV---EVLGHPSTGGFLTH---CG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 338 ~~~v~v~~~~pq~---~~L~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
.++|.+.+++|+. .++..++ +++.. -| -.++.||+++|+|+|+.-..+ ....+.+ -+.|....
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~-~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVD-GETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhcc-CCceEEeC---
Confidence 3588999999976 4677777 55532 22 257899999999999974432 3334555 45677664
Q ss_pred CCccCHHHHHHHHHHHhCCC
Q 012063 411 NGLIKREEIAKVIKGLMHGE 430 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~ 430 (471)
.+.+++.++|.++++++
T Consensus 349 ---~~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDP 365 (392)
T ss_pred ---CCHHHHHHHHHHHHhCh
Confidence 35899999999999873
No 71
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.67 E-value=3.1e-05 Score=73.54 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=64.4
Q ss_pred ccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHHHHhHHHHHH
Q 012063 16 MGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIKRSLSSVRD 95 (471)
Q Consensus 16 ~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (471)
.-|+.-+-++.++|.++ ||+|.+.+-.... ...+.... ++++..+..... .....+.....+. ..+.+
T Consensus 10 p~hvhfFk~~I~eL~~~-GheV~it~R~~~~----~~~LL~~y--g~~y~~iG~~g~----~~~~Kl~~~~~R~-~~l~~ 77 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKR-GHEVLITARDKDE----TEELLDLY--GIDYIVIGKHGD----SLYGKLLESIERQ-YKLLK 77 (335)
T ss_pred chHHHHHHHHHHHHHhC-CCEEEEEEeccch----HHHHHHHc--CCCeEEEcCCCC----CHHHHHHHHHHHH-HHHHH
Confidence 44999999999999665 9999998855332 23333322 577777654331 1222232222222 12223
Q ss_pred HHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecc
Q 012063 96 VFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLT 135 (471)
Q Consensus 96 ~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 135 (471)
.+ .+.+||++|+-. ...+..+|..+|+|++.|.=.
T Consensus 78 ~~----~~~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 78 LI----KKFKPDVAISFG-SPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HH----HhhCCCEEEecC-cHHHHHHHHHhCCCeEEEecC
Confidence 33 344999999754 466677999999999988744
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.65 E-value=0.00016 Score=77.69 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=69.0
Q ss_pred CCeeeccCcchhhh---hcCCc--ccccccc---cCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 339 QGLVVPSWAPQVEV---LGHPS--TGGFLTH---CGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 339 ~~v~v~~~~pq~~~---L~~~~--~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
.+|.+.+++++.++ +..++ .++||.- =|+ .+++||+++|+|+|+....+ ....++. ..-|+.++..
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~-g~nGlLVdP~ 622 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRV-LDNGLLVDPH 622 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhcc-CCcEEEECCC
Confidence 46777788887553 43331 2366653 233 58999999999999986543 2223334 4567777764
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+.++++++|.+++++ ++.+++..+-+....+ .-+-+..++++++.+.
T Consensus 623 -----D~eaLA~AL~~LL~D---pelr~~m~~~gr~~v~----~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 623 -----DQQAIADALLKLVAD---KQLWAECRQNGLKNIH----LFSWPEHCKTYLSRIA 669 (1050)
T ss_pred -----CHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHH
Confidence 589999999999988 4444333332222111 2455556665555443
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.65 E-value=4.5e-05 Score=73.99 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCCeeeccCcchh---hhhcCCccccccc--c--------cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhccee
Q 012063 338 EQGLVVPSWAPQV---EVLGHPSTGGFLT--H--------CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVAL 404 (471)
Q Consensus 338 ~~~v~v~~~~pq~---~~L~~~~~~~~It--H--------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~ 404 (471)
..++.+.+++|+. .++..++ ++|. . |.-+++.||+++|+|+|+.+..+ ....+++ ...|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~ad--i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAAD--LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCC--EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCceE
Confidence 3589999999764 4566688 4544 2 23468999999999999876532 2234444 44788
Q ss_pred ecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 405 RPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 405 ~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
.+... +.+++.++|.+++++
T Consensus 308 ~~~~~-----~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPPG-----DPEALADAIERLLDD 327 (355)
T ss_pred EeCCC-----CHHHHHHHHHHHHhC
Confidence 77653 589999999999987
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.61 E-value=7e-05 Score=74.28 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCeeeccCcchh---hhhcCCccccccc---ccCch-hHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCC
Q 012063 339 QGLVVPSWAPQV---EVLGHPSTGGFLT---HCGWN-STLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYEN 411 (471)
Q Consensus 339 ~~v~v~~~~pq~---~~L~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 411 (471)
+++.+.+|+|+. .+++.++ ++|. +-|.| ++.||+++|+|+|+.+..+- ...+.+ |.+....
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~--~~~~~~~---- 317 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP--DMILLAE---- 317 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC--CceeecC----
Confidence 468888999864 4666777 5653 33444 99999999999999776532 223333 4333332
Q ss_pred CccCHHHHHHHHHHHhCC
Q 012063 412 GLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~ 429 (471)
.+.+++.+++.+++.+
T Consensus 318 --~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 318 --PDVESIVRKLEEAISI 333 (398)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 3589999999999975
No 75
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.52 E-value=0.00016 Score=70.30 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCeeecc-Ccch---hhhhcCCccccccc--c----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCC
Q 012063 339 QGLVVPS-WAPQ---VEVLGHPSTGGFLT--H----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPE 408 (471)
Q Consensus 339 ~~v~v~~-~~pq---~~~L~~~~~~~~It--H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~ 408 (471)
.++.+.+ |+|+ ..++..++ ++|. + |.-++++||+++|+|+|+.+..+ ...+.. .+.|..+..
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEcC
Confidence 4676654 4876 45677777 5552 2 33458899999999999977654 233445 577777765
Q ss_pred CCCCccCHHHHHHHHHHHhCC
Q 012063 409 YENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 409 ~~~~~~~~~~l~~~i~~~l~~ 429 (471)
. +.+++.+++.+++++
T Consensus 319 ~-----d~~~~~~~l~~l~~~ 334 (366)
T cd03822 319 G-----DPAALAEAIRRLLAD 334 (366)
T ss_pred C-----CHHHHHHHHHHHHcC
Confidence 4 489999999999987
No 76
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.50 E-value=5.2e-05 Score=72.84 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCeeeccCcch-hhhhcCCccccccc--c--cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 339 QGLVVPSWAPQ-VEVLGHPSTGGFLT--H--CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 339 ~~v~v~~~~pq-~~~L~~~~~~~~It--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.++.+.+|.++ .+++..++ ++|. + |.-+++.||+++|+|+|+.... .....+++ -+.|...+..
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d--~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~---- 314 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAAD--LFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPVG---- 314 (353)
T ss_pred ccEEEecccCCHHHHHHhCC--EEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECCC----
Confidence 46777787665 56788888 5552 2 3346799999999999986443 45556666 6788887764
Q ss_pred cCHHHH---HHHHHHHhCC
Q 012063 414 IKREEI---AKVIKGLMHG 429 (471)
Q Consensus 414 ~~~~~l---~~~i~~~l~~ 429 (471)
+.+.+ .+++.+++.+
T Consensus 315 -~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 315 -DEAALAAAALALLDLLLD 332 (353)
T ss_pred -CHHHHHHHHHHHHhccCC
Confidence 46676 5566666655
No 77
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.50 E-value=4.6e-05 Score=75.52 Aligned_cols=110 Identities=20% Similarity=0.166 Sum_probs=69.6
Q ss_pred cCCCeeeccCcch-hhhhcCCcccccc--cc--cCch-hHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 337 KEQGLVVPSWAPQ-VEVLGHPSTGGFL--TH--CGWN-STLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 337 ~~~~v~v~~~~pq-~~~L~~~~~~~~I--tH--gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
...+|.+.+++++ ..++..++ ++| ++ .|.+ .+.||+++|+|+|+.+...+.. .+. .|.|+.+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~ad--v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~-~- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAA--VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA-A- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCC--EEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC-C-
Confidence 3457888899886 56677888 555 32 3543 6999999999999987643321 123 46676664 2
Q ss_pred CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 012063 411 NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHK 466 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (471)
+.+++.++|.++++| ++.+++. ++..++.+.+.-+-+..++++.+-
T Consensus 348 ----~~~~la~ai~~ll~~---~~~~~~~---~~~ar~~v~~~fsw~~~~~~~~~~ 393 (397)
T TIGR03087 348 ----DPADFAAAILALLAN---PAEREEL---GQAARRRVLQHYHWPRNLARLDAL 393 (397)
T ss_pred ----CHHHHHHHHHHHHcC---HHHHHHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 589999999999987 4433332 222222222345555666555443
No 78
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.48 E-value=7.3e-06 Score=79.85 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=78.9
Q ss_pred ccEEEEEeCCC---cCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhc-CCCee
Q 012063 267 GSVLFVSFGSG---GTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTK-EQGLV 342 (471)
Q Consensus 267 ~~~i~vs~GS~---~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~ 342 (471)
++.|+|++=.. .....+.+.++++++...+.++++....... ....+-+.+.+... .+++.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---------------~~~~i~~~i~~~~~~~~~v~ 265 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---------------GSRIINEAIEEYVNEHPNFR 265 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---------------CchHHHHHHHHHhcCCCCEE
Confidence 45888888543 2334567889999998876565555433211 00001111111111 35777
Q ss_pred eccC---cchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceee-cCCCCCCccCHHH
Q 012063 343 VPSW---APQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALR-PPEYENGLIKREE 418 (471)
Q Consensus 343 v~~~---~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~-~~~~~~~~~~~~~ 418 (471)
+.+- .....++.+++ ++||.++.+- .||.+.|||.|.+- +.+ ...+ .|..+. +. .++++
T Consensus 266 l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~-~g~nvl~vg------~~~~~ 328 (365)
T TIGR03568 266 LFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRL-RADSVIDVD------PDKEE 328 (365)
T ss_pred EECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhh-hcCeEEEeC------CCHHH
Confidence 7654 44577888999 9999885444 99999999999873 322 1112 344333 32 56899
Q ss_pred HHHHHHHHhC
Q 012063 419 IAKVIKGLMH 428 (471)
Q Consensus 419 l~~~i~~~l~ 428 (471)
|.+++.+++.
T Consensus 329 I~~a~~~~~~ 338 (365)
T TIGR03568 329 IVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHhC
Confidence 9999998543
No 79
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.48 E-value=0.0002 Score=69.54 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=54.5
Q ss_pred CCeeeccCcch-hhhhcCCccccccc--ccCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCcc
Q 012063 339 QGLVVPSWAPQ-VEVLGHPSTGGFLT--HCGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLI 414 (471)
Q Consensus 339 ~~v~v~~~~pq-~~~L~~~~~~~~It--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 414 (471)
++|.+.+|.++ ..++..+++-++-+ +-|+ ++++||+++|+|+|+.-.. .....+.+ -+.|..++..
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~----- 315 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRP-GETGLLVPPG----- 315 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhC-CCceEEeCCC-----
Confidence 47888888543 56777788433333 2233 5999999999999986533 33445555 4578887654
Q ss_pred CHHHHHHHHHHHhC
Q 012063 415 KREEIAKVIKGLMH 428 (471)
Q Consensus 415 ~~~~l~~~i~~~l~ 428 (471)
+.+++.++|..++.
T Consensus 316 ~~~~l~~~i~~~~~ 329 (355)
T cd03819 316 DAEALAQALDQILS 329 (355)
T ss_pred CHHHHHHHHHHHHh
Confidence 59999999976664
No 80
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.46 E-value=0.00067 Score=66.04 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccccCc-----hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTHCGW-----NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItHgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
.++|.+.+++++.+ ++..++ +++.+.-. +++.||+++|+|+|+....+.. ..++. -|..+...
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~----e~~~~---~g~~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNR----EVLGD---KAIYFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCccc----eeecC---CeeEecCc
Confidence 45899999999865 455566 55544332 4799999999999997554321 11222 23333322
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
+.+.+++.+++++ ++.+++ +++..++.+.+.-+-+...+++++
T Consensus 318 -------~~l~~~i~~l~~~---~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~ 360 (363)
T cd04955 318 -------DDLASLLEELEAD---PEEVSA---MAKAARERIREKYTWEKIADQYEE 360 (363)
T ss_pred -------hHHHHHHHHHHhC---HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1299999999987 433322 333333322234455666666554
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.46 E-value=0.00099 Score=64.36 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=52.5
Q ss_pred CCeeeccCcc-hhhhhcCCcccccccccC----chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 339 QGLVVPSWAP-QVEVLGHPSTGGFLTHCG----WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 339 ~~v~v~~~~p-q~~~L~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.++.+.+... -..++..++ ++|..+. -+++.||+++|+|+|+... ..+...+.+ .|..+...
T Consensus 251 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~~---- 317 (365)
T cd03807 251 DKVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPPG---- 317 (365)
T ss_pred ceEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCCC----
Confidence 3555555443 356788888 6775544 3799999999999998543 334444444 44555443
Q ss_pred cCHHHHHHHHHHHhCC
Q 012063 414 IKREEIAKVIKGLMHG 429 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~ 429 (471)
+.+++.+++.+++++
T Consensus 318 -~~~~l~~~i~~l~~~ 332 (365)
T cd03807 318 -DPEALAEAIEALLAD 332 (365)
T ss_pred -CHHHHHHHHHHHHhC
Confidence 589999999999987
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.45 E-value=0.0001 Score=71.97 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=78.9
Q ss_pred EEEEEeCCCcCCCHHhHHHHHHHHHhCCCce-EEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhh----cCCCeee
Q 012063 269 VLFVSFGSGGTLSYDQLEELALGLELSEQQF-LWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRT----KEQGLVV 343 (471)
Q Consensus 269 ~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~----~~~~v~v 343 (471)
.+++..|.........+..+++++......+ ++.+|.+.. -+.+.+.. .+.++.+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~--------------------~~~l~~~~~~~~l~~~v~f 240 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD--------------------FEKCKAYSRELGIEQRIIW 240 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc--------------------HHHHHHHHHHcCCCCeEEE
Confidence 5566777764323344667777777664333 334444321 12222221 1357888
Q ss_pred ccCcch--hh---hhcCCcccccccc----cCchhHHHHHhhCCceeecc-ccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 344 PSWAPQ--VE---VLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWP-LYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 344 ~~~~pq--~~---~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.+|.++ .. .+..++ ++|.. |--.++.||+++|+|+|+.- ..+ ....+++ -..|..++..
T Consensus 241 ~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~-~~~G~lv~~~---- 309 (359)
T PRK09922 241 HGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKP-GLNGELYTPG---- 309 (359)
T ss_pred ecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccC-CCceEEECCC----
Confidence 888754 22 344456 55532 22479999999999999875 332 2223444 4568777654
Q ss_pred cCHHHHHHHHHHHhCCCc
Q 012063 414 IKREEIAKVIKGLMHGED 431 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~ 431 (471)
+.+++.++|.+++++++
T Consensus 310 -d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 310 -NIDEFVGKLNKVISGEV 326 (359)
T ss_pred -CHHHHHHHHHHHHhCcc
Confidence 59999999999999853
No 83
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.40 E-value=8.8e-06 Score=78.45 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=81.0
Q ss_pred CCccEEEEEeCCCcCCC-H---HhHHHHHHHHHhC-CCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcC-
Q 012063 265 ASGSVLFVSFGSGGTLS-Y---DQLEELALGLELS-EQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKE- 338 (471)
Q Consensus 265 ~~~~~i~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~- 338 (471)
.+++.++|++=...... + ..+.+++++|... +.++||.+.+.+. .-..+.+....
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~-------------------~~~~i~~~l~~~ 238 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR-------------------GSDIIIEKLKKY 238 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH-------------------HHHHHHHHHTT-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch-------------------HHHHHHHHhccc
Confidence 45779999995554444 2 3455677777766 5678888874321 00112222211
Q ss_pred CCeeeccCcc---hhhhhcCCcccccccccCchhHH-HHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCcc
Q 012063 339 QGLVVPSWAP---QVEVLGHPSTGGFLTHCGWNSTL-ESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLI 414 (471)
Q Consensus 339 ~~v~v~~~~p---q~~~L~~~~~~~~ItHgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 414 (471)
+|+++..-++ ...+|.+++ ++||..| +++ ||.+.|+|.|.+=..++.+ .-+ . .|..+.+. .
T Consensus 239 ~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~iR~~geRq---e~r-~-~~~nvlv~------~ 303 (346)
T PF02350_consen 239 DNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNIRDSGERQ---EGR-E-RGSNVLVG------T 303 (346)
T ss_dssp TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEECSSS-S-H---HHH-H-TTSEEEET------S
T ss_pred CCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEecCCCCCH---HHH-h-hcceEEeC------C
Confidence 3787775554 577888999 9999999 566 9999999999992222222 112 2 35555543 5
Q ss_pred CHHHHHHHHHHHhCCCchHHHHHHHHH
Q 012063 415 KREEIAKVIKGLMHGEDGVIIRDRMNR 441 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~r~~a~~ 441 (471)
+.++|.+++++++.+ ....++.+.
T Consensus 304 ~~~~I~~ai~~~l~~---~~~~~~~~~ 327 (346)
T PF02350_consen 304 DPEAIIQAIEKALSD---KDFYRKLKN 327 (346)
T ss_dssp SHHHHHHHHHHHHH----HHHHHHHHC
T ss_pred CHHHHHHHHHHHHhC---hHHHHhhcc
Confidence 799999999999976 455544443
No 84
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.35 E-value=0.00017 Score=70.04 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=66.2
Q ss_pred cCCCeeeccCcchh---hhhcCCcccccccc----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 337 KEQGLVVPSWAPQV---EVLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 337 ~~~~v~v~~~~pq~---~~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
...++.+.+|+|+. .++..++ ++|.- |.-+++.||+++|+|+|+....+ ....+.+ . |..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d--~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~-~--~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGAR--AFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD-A--ALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhh--hhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC-c--eeeeCC-
Confidence 34588899999875 4577777 44432 23458999999999999865432 1112223 3 444443
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
-+.+++.++|.+++.| ++.+.+..+-+....+ .-+-++..++++
T Consensus 321 ----~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~----~~sw~~~~~~~~ 364 (365)
T cd03809 321 ----LDPEALAAAIERLLED---PALREELRERGLARAK----RFSWEKTARRTL 364 (365)
T ss_pred ----CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH----hCCHHHHHHHHh
Confidence 3589999999999988 6665555444433222 244455555443
No 85
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.33 E-value=0.0003 Score=67.67 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=75.6
Q ss_pred EEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhh--cCCCeeeccC
Q 012063 269 VLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRT--KEQGLVVPSW 346 (471)
Q Consensus 269 ~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~v~~~ 346 (471)
.+.+..|.... ......++++++..+.++++ .+.... ........... ..+++.+.++
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i-~G~~~~-----------------~~~~~~~~~~~~~~~~~v~~~G~ 231 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKL-AGPVSD-----------------PDYFYREIAPELLDGPDIEYLGE 231 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEE-EeCCCC-----------------HHHHHHHHHHhcccCCcEEEeCC
Confidence 34455677632 23355677777777666543 443321 00001111111 2468999999
Q ss_pred cchh---hhhcCCccccccc--ccCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHH
Q 012063 347 APQV---EVLGHPSTGGFLT--HCGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIA 420 (471)
Q Consensus 347 ~pq~---~~L~~~~~~~~It--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~ 420 (471)
+++. .+++.+++-++-+ +-|+ .++.||+++|+|+|+....+ +...+.+ -..|..++ ..+++.
T Consensus 232 ~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~-~~~g~l~~-------~~~~l~ 299 (335)
T cd03802 232 VGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVED-GVTGFLVD-------SVEELA 299 (335)
T ss_pred CCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeC-CCcEEEeC-------CHHHHH
Confidence 9875 4577788433333 2343 47999999999999876532 3333444 23566653 289999
Q ss_pred HHHHHHhCC
Q 012063 421 KVIKGLMHG 429 (471)
Q Consensus 421 ~~i~~~l~~ 429 (471)
+++.+++..
T Consensus 300 ~~l~~l~~~ 308 (335)
T cd03802 300 AAVARADRL 308 (335)
T ss_pred HHHHHHhcc
Confidence 999888654
No 86
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.33 E-value=0.0001 Score=71.63 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCeeeccCcch-hhhhcCCccccccccc----CchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 339 QGLVVPSWAPQ-VEVLGHPSTGGFLTHC----GWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 339 ~~v~v~~~~pq-~~~L~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.++.+.++..+ ..++..++ ++|.-. .-+++.||+++|+|+|+. |...+...+++ .|..+ ..
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad--~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~--~~----- 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAAD--LFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIV--PI----- 310 (360)
T ss_pred CcEEEecccccHHHHHHhhc--eEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEe--CC-----
Confidence 46777777654 57788888 554432 246899999999999974 44445445555 45444 33
Q ss_pred cCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 414 IKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
-+.+++.+++.++++++ +.+++....-++.+.+ .-+-+...+++.+
T Consensus 311 ~~~~~~~~~i~~ll~~~--~~~~~~~~~~~~~~~~----~~s~~~~~~~~~~ 356 (360)
T cd04951 311 SDPEALANKIDEILKMS--GEERDIIGARRERIVK----KFSINSIVQQWLT 356 (360)
T ss_pred CCHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 36899999999998432 4454444333333332 3444444444443
No 87
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.30 E-value=0.00058 Score=66.38 Aligned_cols=85 Identities=18% Similarity=0.035 Sum_probs=57.0
Q ss_pred CCeeeccCcch-hhhhcCCcccccccc----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 339 QGLVVPSWAPQ-VEVLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 339 ~~v~v~~~~pq-~~~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.++.+.++..+ .+++..++ ++|.- |--++++||+++|+|+|+-...+ ....+.+ +.+..+..
T Consensus 249 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~----- 315 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD----- 315 (358)
T ss_pred CcEEEecccCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-----
Confidence 46777777444 66788888 55542 34578999999999999865544 2223333 45544433
Q ss_pred cCHHHHHHHHHHHhCCCchHHHHHHH
Q 012063 414 IKREEIAKVIKGLMHGEDGVIIRDRM 439 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~~~~~r~~a 439 (471)
-++++++++|.+++++ +..+++.
T Consensus 316 ~~~~~~a~~i~~l~~~---~~~~~~~ 338 (358)
T cd03812 316 ESPEIWAEEILKLKSE---DRRERSS 338 (358)
T ss_pred CCHHHHHHHHHHHHhC---cchhhhh
Confidence 2479999999999998 4444333
No 88
>PLN02275 transferase, transferring glycosyl groups
Probab=98.28 E-value=0.003 Score=61.90 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=51.6
Q ss_pred CCeeec-cCcchhhh---hcCCccccccc-c-----cC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecC
Q 012063 339 QGLVVP-SWAPQVEV---LGHPSTGGFLT-H-----CG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPP 407 (471)
Q Consensus 339 ~~v~v~-~~~pq~~~---L~~~~~~~~It-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~ 407 (471)
.|+++. .|+|+.++ |+.++ ++|. + -| -+++.||+++|+|+|+.... .+...+++ -+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccC-CCCeEEEC
Confidence 456654 47887555 77888 6663 1 12 24799999999999997532 24555666 56788764
Q ss_pred CCCCCccCHHHHHHHHHHHh
Q 012063 408 EYENGLIKREEIAKVIKGLM 427 (471)
Q Consensus 408 ~~~~~~~~~~~l~~~i~~~l 427 (471)
+.+++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3788999988765
No 89
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.27 E-value=0.00071 Score=68.42 Aligned_cols=200 Identities=17% Similarity=0.170 Sum_probs=98.7
Q ss_pred cccccChHHHHHhhcCCCCCCeEEec-cCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHhHHHH
Q 012063 210 TFMELEPGVIKALQEEPSMRSIYPIG-PIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQLEEL 288 (471)
Q Consensus 210 s~~~le~~~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~~~~~ 288 (471)
....+|.++-. ++ +.++.||| |+....... ....+..+-+.-.+++++|-+--||-.+--...+-.+
T Consensus 367 ~IfPFE~~~y~---~~--gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~ 434 (608)
T PRK01021 367 LILPFEQNLFK---DS--PLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQ 434 (608)
T ss_pred ecCccCHHHHH---hc--CCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45566665433 22 33899999 887653311 1111122222223356799999999543223333445
Q ss_pred HHHHH--hC--CCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCC---eeeccCcchhhhhcCCccccc
Q 012063 289 ALGLE--LS--EQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQG---LVVPSWAPQVEVLGHPSTGGF 361 (471)
Q Consensus 289 ~~al~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~---v~v~~~~pq~~~L~~~~~~~~ 361 (471)
+++.+ .. ..+++....+.. ..+.+.+.....+ +.+..--...++++.++ +.
T Consensus 435 l~aa~~~~l~~~l~fvvp~a~~~--------------------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD--~a 492 (608)
T PRK01021 435 VQAFLASSLASTHQLLVSSANPK--------------------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECD--CA 492 (608)
T ss_pred HHHHHHHHhccCeEEEEecCchh--------------------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcC--ee
Confidence 55555 33 234443221110 0111222121112 12221001257788888 77
Q ss_pred ccccCchhHHHHHhhCCceeec-cccccchhhHHHHHhhh-----c-----ceee--cCCCC-CCccCHHHHHHHHHHHh
Q 012063 362 LTHCGWNSTLESIVHGVPLIAW-PLYAEQRLNAVILSEDL-----N-----VALR--PPEYE-NGLIKREEIAKVIKGLM 427 (471)
Q Consensus 362 ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~~~~-----G-----~g~~--~~~~~-~~~~~~~~l~~~i~~~l 427 (471)
+.=+| -.|+|+...|+|||++ -...=-+..|+++.+ . | +|.. .+.-. .+.+|+++|.+++ ++|
T Consensus 493 LaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvk-i~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL 569 (608)
T PRK01021 493 LAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFK-IILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DIL 569 (608)
T ss_pred eecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHh-ccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHh
Confidence 77776 4678999999999984 222112234555554 1 1 1222 11110 1238999999997 788
Q ss_pred CCCc-hHHHHHHHHHHHHHH
Q 012063 428 HGED-GVIIRDRMNRLKDAA 446 (471)
Q Consensus 428 ~~~~-~~~~r~~a~~l~~~~ 446 (471)
.|+. .+++++..+++++.+
T Consensus 570 ~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 570 KTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 7732 233444444444443
No 90
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=0.0005 Score=65.75 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=57.2
Q ss_pred cccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHH
Q 012063 361 FLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRM 439 (471)
Q Consensus 361 ~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a 439 (471)
|+-+||+| .+|++++|+|+|.=|+..-|.+-++++.+ .|.|+.++ +++.+.+++..+++| ++.|++.
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~~~v~-------~~~~l~~~v~~l~~~---~~~r~~~ 393 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQ-AGAGLQVE-------DADLLAKAVELLLAD---EDKREAY 393 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHh-cCCeEEEC-------CHHHHHHHHHHhcCC---HHHHHHH
Confidence 45689987 68999999999999999999999999999 99999986 378899999888887 4444444
No 91
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=9.1e-05 Score=70.08 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=78.4
Q ss_pred Ceee---ccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCH
Q 012063 340 GLVV---PSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKR 416 (471)
Q Consensus 340 ~v~v---~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~ 416 (471)
++.+ .+|.+...++.++- +++|-.| |-.-||-..|+|.+++=...++|. + .+ .|.-+.+. .+.
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~--~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~-v~-agt~~lvg------~~~ 328 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAF--LILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---G-VE-AGTNILVG------TDE 328 (383)
T ss_pred cEEEeCCcchHHHHHHHHhce--EEEecCC-chhhhHHhcCCcEEeeccCCCCcc---c-ee-cCceEEeC------ccH
Confidence 4554 36678888999998 9999998 678899999999999999999996 2 23 46555555 568
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 012063 417 EEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHK 466 (471)
Q Consensus 417 ~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (471)
+.+.+++.+++++ ++..++++....-... |.++++-++.+...
T Consensus 329 ~~i~~~~~~ll~~---~~~~~~m~~~~npYgd----g~as~rIv~~l~~~ 371 (383)
T COG0381 329 ENILDAATELLED---EEFYERMSNAKNPYGD----GNASERIVEILLNY 371 (383)
T ss_pred HHHHHHHHHHhhC---hHHHHHHhcccCCCcC----cchHHHHHHHHHHH
Confidence 9999999999998 7777766665554432 44666655555443
No 92
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.22 E-value=0.0029 Score=62.36 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=68.8
Q ss_pred Ceee-ccCcch---hhhhcCCcccccccc---cC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCC
Q 012063 340 GLVV-PSWAPQ---VEVLGHPSTGGFLTH---CG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYEN 411 (471)
Q Consensus 340 ~v~v-~~~~pq---~~~L~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 411 (471)
+++. .+++++ ..++..++ ++|.= -| -.+++||+++|+|+|+.... .....+++ -+.|..++..+.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~-~~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVD-GETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhC-CCceEEcCCCCC
Confidence 3443 456765 44577788 66542 22 35779999999999986543 34455566 567888776540
Q ss_pred -CccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 412 -GLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 412 -~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
..-..+++.++|.+++++ ++.+++..+ ..++.+.+.-+-+...+++++-+.+
T Consensus 334 ~~~~~~~~l~~~i~~l~~~---~~~~~~~~~---~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 334 DADGFQAELAKAINILLAD---PELAKKMGI---AGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred cccchHHHHHHHHHHHHhC---HHHHHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 001128999999999987 443332222 2221111234556666666665544
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.19 E-value=0.00016 Score=69.64 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=65.9
Q ss_pred chhhhhcCCcccccccccCchhHHHHHhhCCceeec-cccccchhhHHHHHhhhc-ceee--cCCCC------CCccCHH
Q 012063 348 PQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW-PLYAEQRLNAVILSEDLN-VALR--PPEYE------NGLIKRE 417 (471)
Q Consensus 348 pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~~~~G-~g~~--~~~~~------~~~~~~~ 417 (471)
.-.+++..++ +.+.=.| -.|+|+...|+|||++ -...=-+..|+++.+ .. +|+. +-.+. .+.+|++
T Consensus 253 ~~~~~m~~ad--~al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~ 328 (373)
T PF02684_consen 253 ESYDAMAAAD--AALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPE 328 (373)
T ss_pred chHHHHHhCc--chhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHH
Confidence 3456687888 6666555 5689999999999885 233233445666655 33 2211 00000 2348999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHH
Q 012063 418 EIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTK 458 (471)
Q Consensus 418 ~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 458 (471)
.+.+++.++++| ++.++..+...+.+++....|.++..
T Consensus 329 ~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 329 NIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 999999999998 55566666666666665555555443
No 94
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.06 E-value=2.3e-05 Score=62.98 Aligned_cols=114 Identities=23% Similarity=0.256 Sum_probs=74.7
Q ss_pred EEEEEeCCCcCCCHHhH-----HHHHHHHHhCCC-ceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCee
Q 012063 269 VLFVSFGSGGTLSYDQL-----EELALGLELSEQ-QFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLV 342 (471)
Q Consensus 269 ~i~vs~GS~~~~~~~~~-----~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~ 342 (471)
.+||+-||.. + .+.+ ++..+.|.+.+. +.+...+.+.. + -++......+..++.
T Consensus 5 ~vFVTVGtT~-F-d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~-----------~~d~~~~~~k~~gl~ 64 (170)
T KOG3349|consen 5 TVFVTVGTTS-F-DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------F-----------FGDPIDLIRKNGGLT 64 (170)
T ss_pred EEEEEecccc-H-HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------C-----------CCCHHHhhcccCCeE
Confidence 7999999975 2 2222 345566666664 56666665421 0 111111111222443
Q ss_pred e--ccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceeecccc----ccchhhHHHHHhhhcceee
Q 012063 343 V--PSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY----AEQRLNAVILSEDLNVALR 405 (471)
Q Consensus 343 v--~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~~~~~~G~g~~ 405 (471)
+ .+|.|- .+..+.++ ++|.|+|+||++|.|..|+|.|+++-- ..|-.-|..+++ .|.=..
T Consensus 65 id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~ 131 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYY 131 (170)
T ss_pred EEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEE
Confidence 3 456674 55566688 999999999999999999999999953 578888888888 675444
No 95
>PLN02949 transferase, transferring glycosyl groups
Probab=98.00 E-value=0.007 Score=60.88 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=50.9
Q ss_pred CCCeeeccCcchhh---hhcCCccccccc---ccCch-hHHHHHhhCCceeeccccccchhhHHHHHhh-hc-ceeecCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLT---HCGWN-STLESIVHGVPLIAWPLYAEQRLNAVILSED-LN-VALRPPE 408 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~-~G-~g~~~~~ 408 (471)
.++|.+.+++|+.+ +|..++ ++|+ +=|+| ++.||+++|+|.|+....+--. ..+.++ .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 45788889998654 566777 5552 23444 7999999999999986543100 001110 12 23322
Q ss_pred CCCCccCHHHHHHHHHHHhCC
Q 012063 409 YENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 409 ~~~~~~~~~~l~~~i~~~l~~ 429 (471)
-+.++++++|.+++++
T Consensus 407 -----~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 -----TTVEEYADAILEVLRM 422 (463)
T ss_pred -----CCHHHHHHHHHHHHhC
Confidence 2589999999999974
No 96
>PLN00142 sucrose synthase
Probab=97.99 E-value=0.0049 Score=65.07 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=40.0
Q ss_pred ccccc---cCch-hHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHh
Q 012063 360 GFLTH---CGWN-STLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLM 427 (471)
Q Consensus 360 ~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l 427 (471)
+||.- -|+| ++.||+++|+|+|+....+ ....+++ -.-|..++.. +.++++++|.+++
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~d-G~tG~LV~P~-----D~eaLA~aI~~lL 730 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVD-GVSGFHIDPY-----HGDEAANKIADFF 730 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHH
Confidence 66642 4555 8999999999999865443 4445555 4568888765 4788888876544
No 97
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.97 E-value=0.037 Score=58.53 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCeeeccCc-ch---hhhhcC-Cc-cccccc---ccCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCC
Q 012063 339 QGLVVPSWA-PQ---VEVLGH-PS-TGGFLT---HCGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPE 408 (471)
Q Consensus 339 ~~v~v~~~~-pq---~~~L~~-~~-~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~ 408 (471)
.+|.+.++. +. .+++.+ ++ .++||. .=|. .+++||+++|+|+|+.-..+ ....+++ -.-|..+++
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~d-g~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQD-GVSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcC-CCcEEEeCC
Confidence 457666653 32 234433 21 125663 2233 48999999999999965543 4445555 456888876
Q ss_pred CCCCccCHHHHHHHHHHHh
Q 012063 409 YENGLIKREEIAKVIKGLM 427 (471)
Q Consensus 409 ~~~~~~~~~~l~~~i~~~l 427 (471)
. ++++++++|.+++
T Consensus 694 ~-----D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 Y-----HGEEAAEKIVDFF 707 (784)
T ss_pred C-----CHHHHHHHHHHHH
Confidence 5 4889999998876
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.83 E-value=0.059 Score=56.75 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=69.3
Q ss_pred CCCeeeccCcch-hhhhcCCccccccc---ccC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 338 EQGLVVPSWAPQ-VEVLGHPSTGGFLT---HCG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 338 ~~~v~v~~~~pq-~~~L~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
.++|.+.+|.++ ..++..++ +||. +.| -++++||+++|+|+|+....+ ....+++ -..|+.++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~d-g~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQE-GVTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccC-CCCEEEeCCCC--
Confidence 357888888775 56677777 5554 445 458999999999999976532 3344555 34688887665
Q ss_pred ccCHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 413 LIKREEIAKVIKGLMHGED-GVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
.+.+++.+++.+++.+.. .+.+++++++..+ +.-|-+..++++++
T Consensus 644 -~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~ 689 (694)
T PRK15179 644 -VTAPDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVR 689 (694)
T ss_pred -CChHHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHH
Confidence 666777777777665311 1455554433321 23455555555543
No 99
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.81 E-value=0.032 Score=55.66 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=50.7
Q ss_pred eeccCcchhhhhcCCcccccccc----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHH
Q 012063 342 VVPSWAPQVEVLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKRE 417 (471)
Q Consensus 342 ~v~~~~pq~~~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~ 417 (471)
++.++.+..+++...+ +||.- +=-++++||+++|+|+|+.-..+ + ..+.+ -+-|... -+.+
T Consensus 287 vf~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~-------~~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTY-------DDGK 351 (462)
T ss_pred EECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEec-------CCHH
Confidence 3556666677888888 88765 33468999999999999975433 2 23333 3444443 1478
Q ss_pred HHHHHHHHHhCC
Q 012063 418 EIAKVIKGLMHG 429 (471)
Q Consensus 418 ~l~~~i~~~l~~ 429 (471)
++.+++.++|.+
T Consensus 352 ~~a~ai~~~l~~ 363 (462)
T PLN02846 352 GFVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHHcc
Confidence 999999999985
No 100
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.81 E-value=0.00058 Score=67.84 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=74.4
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccccC----chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTHCG----WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
..++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+-... .....+.+ .+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~-~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDN-GGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcC-CCcEEEeCCC-
Confidence 34688889999765 444444447765442 45799999999999986533 34455555 4478777654
Q ss_pred CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 411 NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
-+.+++.++|.++++| ++.++ ++++..++.+.+.-+.+.+.++|+
T Consensus 362 ---~~~~~la~~I~~ll~~---~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 362 ---PTPNELVSSLSKFIDN---EEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred ---CCHHHHHHHHHHHHhC---HHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 3689999999999987 44333 334444444445666677766664
No 101
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.80 E-value=0.043 Score=53.84 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=67.4
Q ss_pred CCCeeeccCcchhh---hhcCCcccccc------cccCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFL------THCGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPP 407 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~I------tHgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~ 407 (471)
.+||.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...++. .+ +..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 35899999998655 46667854432 23333 358999999999998763 122333 33 33332
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012063 408 EYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 408 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (471)
. -+.+++.++|.+++.++.....+++ ++ +. +.-|=+...+++.+.|.+.
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~~~~~~~~~----~~-~~----~~~sW~~~a~~~~~~l~~~ 372 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLEDGPARERRR----LR-LA----AQNSWDARAAEMLEALQEN 372 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcCCchHHHHH----HH-HH----HHCCHHHHHHHHHHHHHhc
Confidence 2 2699999999998765332222221 11 22 2356677888888777664
No 102
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00022 Score=56.35 Aligned_cols=108 Identities=23% Similarity=0.202 Sum_probs=68.6
Q ss_pred EEEEeCCCcCCCHHhHH--HHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCC-hhhHHhhcCCCeeeccC
Q 012063 270 LFVSFGSGGTLSYDQLE--ELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLP-TGFLDRTKEQGLVVPSW 346 (471)
Q Consensus 270 i~vs~GS~~~~~~~~~~--~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~~~~v~v~~~ 346 (471)
|||+-||....-..... ++.+-.+....++|...|+++. .| + +..+.+|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~-------------------kpva---------gl~v~~F 53 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI-------------------KPVA---------GLRVYGF 53 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc-------------------cccc---------ccEEEee
Confidence 78999997321111111 1222222333578888887543 22 2 2334343
Q ss_pred --cc-hhhhhcCCcccccccccCchhHHHHHhhCCceeeccccc--------cchhhHHHHHhhhcceeecCC
Q 012063 347 --AP-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYA--------EQRLNAVILSEDLNVALRPPE 408 (471)
Q Consensus 347 --~p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~~~~~~G~g~~~~~ 408 (471)
.+ -..+...++ .+|+|+|.||++.++..++|.|++|-.. .|-.-|..+.+ .+.=....+
T Consensus 54 ~~~~kiQsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 54 DKEEKIQSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred chHHHHHHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 33 345566677 9999999999999999999999999643 46667777777 666555543
No 103
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=0.0023 Score=60.60 Aligned_cols=220 Identities=14% Similarity=0.128 Sum_probs=109.8
Q ss_pred cccccChHHHHHhhcCCCCCCeEEec-cCcCCCCCCCccCCCCccccchhhhhccCCCccEEEEEeCCCcCCCHHh---H
Q 012063 210 TFMELEPGVIKALQEEPSMRSIYPIG-PIIRTVSDGELVDGSESHQCMCIRWLDNQASGSVLFVSFGSGGTLSYDQ---L 285 (471)
Q Consensus 210 s~~~le~~~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~i~vs~GS~~~~~~~~---~ 285 (471)
.+..+|..+.+.. +.+..||| |+....+.. .......+-+....+++++.+--||-.+--... +
T Consensus 142 ailPFE~~~y~k~-----g~~~~yVGHpl~d~i~~~-------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f 209 (381)
T COG0763 142 AILPFEPAFYDKF-----GLPCTYVGHPLADEIPLL-------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPF 209 (381)
T ss_pred eecCCCHHHHHhc-----CCCeEEeCChhhhhcccc-------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHH
Confidence 4455666644332 22689999 776655322 111222222322334669999999964322222 2
Q ss_pred HHHHHHHH-hC-CCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhc-CCCeeeccCcchhhhhcCCcccccc
Q 012063 286 EELALGLE-LS-EQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTK-EQGLVVPSWAPQVEVLGHPSTGGFL 362 (471)
Q Consensus 286 ~~~~~al~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~~pq~~~L~~~~~~~~I 362 (471)
.+.++.|+ +. +.+|+.-+.+... ..+-....+... ..+.++.+.-- ..++..++ +.+
T Consensus 210 ~~a~~~l~~~~~~~~~vlp~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~aD--~al 269 (381)
T COG0763 210 VQAAQELKARYPDLKFVLPLVNAKY-----------------RRIIEEALKWEVAGLSLILIDGEK-RKAFAAAD--AAL 269 (381)
T ss_pred HHHHHHHHhhCCCceEEEecCcHHH-----------------HHHHHHHhhccccCceEEecCchH-HHHHHHhh--HHH
Confidence 33333333 22 2355544433211 000011111111 12333332222 23466666 666
Q ss_pred cccCchhHHHHHhhCCceeecc-ccccchhhHHHHHhhhc-c-------eeecCCC-CCCccCHHHHHHHHHHHhCCCc-
Q 012063 363 THCGWNSTLESIVHGVPLIAWP-LYAEQRLNAVILSEDLN-V-------ALRPPEY-ENGLIKREEIAKVIKGLMHGED- 431 (471)
Q Consensus 363 tHgG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~~~~~~G-~-------g~~~~~~-~~~~~~~~~l~~~i~~~l~~~~- 431 (471)
.-+| --++|+..+|+|||+.= .-.=-+..|.+... .. + |..+-++ =+..++++.|.+++..++.|+.
T Consensus 270 ~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~ 347 (381)
T COG0763 270 AASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDR 347 (381)
T ss_pred Hhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHh
Confidence 6666 45789999999999851 11111223444443 22 1 1111000 0123889999999999999842
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 012063 432 GVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKW 467 (471)
Q Consensus 432 ~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (471)
-+.+++...+|++.++ ++++++...+.+++.+
T Consensus 348 ~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 348 REALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 3456666666666655 3557777777666654
No 104
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.67 E-value=0.017 Score=58.48 Aligned_cols=81 Identities=7% Similarity=0.063 Sum_probs=50.6
Q ss_pred Cee-eccCcch--hhhhcCCccccccc---ccCch-hHHHHHhhCCceeeccccc--cchhhHHHHHhhhcceeecCCCC
Q 012063 340 GLV-VPSWAPQ--VEVLGHPSTGGFLT---HCGWN-STLESIVHGVPLIAWPLYA--EQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 340 ~v~-v~~~~pq--~~~L~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
++. ..+|-.+ ..+++.++ +||. +-|+| +.+||+++|+|.|+....+ |.-.+...-.+ .+.|+.++..
T Consensus 338 ~v~~~~g~~~~~~~~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~~~- 413 (466)
T PRK00654 338 KVGVQIGYDEALAHRIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFDDF- 413 (466)
T ss_pred cEEEEEeCCHHHHHHHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeCCC-
Confidence 443 3455333 24677788 6664 33554 8889999999999865432 22111111122 3678887764
Q ss_pred CCccCHHHHHHHHHHHhC
Q 012063 411 NGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~ 428 (471)
+++++.++|.+++.
T Consensus 414 ----d~~~la~~i~~~l~ 427 (466)
T PRK00654 414 ----NAEDLLRALRRALE 427 (466)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 58999999999875
No 105
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.61 E-value=0.0017 Score=64.40 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=74.7
Q ss_pred CCCeeeccCcchhh---hhcCCccccccc--c-------cCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhccee
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLT--H-------CGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVAL 404 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~It--H-------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~ 404 (471)
.+++.+.+|+|+.+ ++..++ +||. + -|. ++++||+++|+|+|+....+ ....+++ -..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~-~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEA-DKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcC-CCceE
Confidence 35788999999854 566788 5554 2 344 56899999999999975433 3334445 45687
Q ss_pred ecCCCCCCccCHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 405 RPPEYENGLIKREEIAKVIKGLMH-GEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 405 ~~~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
.++.. +.+++.++|.++++ | ++.++ ++++..++.+.+.-+.+...+++.+-+.+
T Consensus 351 lv~~~-----d~~~la~ai~~l~~~d---~~~~~---~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVPEN-----DAQALAQRLAAFSQLD---TDELA---PVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EeCCC-----CHHHHHHHHHHHHhCC---HHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 77654 59999999999998 7 44332 22233333233345666777777666554
No 106
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.59 E-value=0.066 Score=53.11 Aligned_cols=60 Identities=20% Similarity=0.081 Sum_probs=39.4
Q ss_pred hhhcCCcccccccc----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHH
Q 012063 351 EVLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVI 423 (471)
Q Consensus 351 ~~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i 423 (471)
++++.++ +||.- |--++++||+++|+|+|+....+ -+ .+.. .+-|+.++..+ .++|++++
T Consensus 302 ~~y~~aD--vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~----Eiv~-~~~G~lv~~~d-----~~~La~~~ 365 (405)
T PRK10125 302 SALNQMD--ALVFSSRVDNYPLILCEALSIGVPVIATHSDA-AR----EVLQ-KSGGKTVSEEE-----VLQLAQLS 365 (405)
T ss_pred HHHHhCC--EEEECCccccCcCHHHHHHHcCCCEEEeCCCC-hH----HhEe-CCcEEEECCCC-----HHHHHhcc
Confidence 3444566 55542 33458999999999999987765 12 2333 35688887654 77787643
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.57 E-value=0.028 Score=57.11 Aligned_cols=115 Identities=8% Similarity=0.027 Sum_probs=62.7
Q ss_pred CCeee-ccCcch--hhhhcCCcccccccc---cCc-hhHHHHHhhCCceeeccccc--cchhhHHHHHhhhcceeecCCC
Q 012063 339 QGLVV-PSWAPQ--VEVLGHPSTGGFLTH---CGW-NSTLESIVHGVPLIAWPLYA--EQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 339 ~~v~v-~~~~pq--~~~L~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
.++++ .++... ..+++.++ +++.- -|+ .+.+||+++|+|.|+....+ |--.+...-.+ .|.|..++..
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~~~ 427 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFEGY 427 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeCCC
Confidence 46654 344322 24567777 55532 223 37799999999999876543 22111111112 3578888764
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKW 467 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (471)
+.+++.+++.++++... -++...++++... ...-+-++.++++++.+
T Consensus 428 -----~~~~l~~~i~~~l~~~~---~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y 474 (476)
T cd03791 428 -----NADALLAALRRALALYR---DPEAWRKLQRNAM---AQDFSWDRSAKEYLELY 474 (476)
T ss_pred -----CHHHHHHHHHHHHHHHc---CHHHHHHHHHHHh---ccCCChHHHHHHHHHHH
Confidence 58999999999885211 0122222233222 22345566666665544
No 108
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.56 E-value=0.00051 Score=66.75 Aligned_cols=127 Identities=10% Similarity=0.135 Sum_probs=82.3
Q ss_pred EEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcch
Q 012063 270 LFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQ 349 (471)
Q Consensus 270 i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq 349 (471)
.++..|++.. ...+..++++++..+.++++ +|.+.. .+.+.+ ...+||.+.+|+|+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g~~--------------------~~~l~~-~~~~~V~~~g~~~~ 252 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDGPE--------------------LDRLRA-KAGPNVTFLGRVSD 252 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECChh--------------------HHHHHh-hcCCCEEEecCCCH
Confidence 3455677642 23466778888877755443 443211 122222 33568999999998
Q ss_pred h---hhhcCCcccccccccCch-hHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHH
Q 012063 350 V---EVLGHPSTGGFLTHCGWN-STLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKG 425 (471)
Q Consensus 350 ~---~~L~~~~~~~~ItHgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~ 425 (471)
. .++..+++-++-+.-|.| ++.||+++|+|+|+....+ ....+++ -+.|+.++.. +.+++.++|.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~~-----~~~~la~~i~~ 322 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEEQ-----TVESLAAAVER 322 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCCC-----CHHHHHHHHHH
Confidence 4 467788843333344443 5789999999999986543 3333555 5678887654 58899999999
Q ss_pred HhCCC
Q 012063 426 LMHGE 430 (471)
Q Consensus 426 ~l~~~ 430 (471)
+++++
T Consensus 323 l~~~~ 327 (351)
T cd03804 323 FEKNE 327 (351)
T ss_pred HHhCc
Confidence 99874
No 109
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.56 E-value=0.098 Score=51.24 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=67.0
Q ss_pred CCeeeccCc--ch---hhhhcCCccccccccc---C-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 339 QGLVVPSWA--PQ---VEVLGHPSTGGFLTHC---G-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 339 ~~v~v~~~~--pq---~~~L~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
+++.+.++. ++ .++++.++ +|+.-. | -.++.||+++|+|+|+....+ ....+.. -..|+.++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~-~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIED-GETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhccc-CCceEEeC--
Confidence 456666665 33 24567777 777533 2 348999999999999875432 2333444 45566543
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
+.+++..+|.+++++ ++.++...+-+.. .+.+.-+-+..++++++-+.+
T Consensus 323 -----~~~~~a~~i~~ll~~---~~~~~~~~~~a~~---~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -----TVEEAAVRILYLLRD---PELRRKMGANARE---HVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -----CcHHHHHHHHHHHcC---HHHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHHHh
Confidence 356778899999987 5544433222222 222245666777777665543
No 110
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.54 E-value=0.024 Score=56.51 Aligned_cols=79 Identities=22% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCCeeeccCcchh---hhhcCCccccccc-----ccCchhHHHHHhhCCceeeccccccchhhHHHHH---hhhcceeec
Q 012063 338 EQGLVVPSWAPQV---EVLGHPSTGGFLT-----HCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILS---EDLNVALRP 406 (471)
Q Consensus 338 ~~~v~v~~~~pq~---~~L~~~~~~~~It-----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~---~~~G~g~~~ 406 (471)
.++|.+.+++|+. .+|..++ ++|+ |-| .++.||+++|+|.|+.-..+.- ...++ + -..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~-g~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPL---LDIVVPWDG-GPTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCCc---hheeeccCC-CCceEEe
Confidence 3578888998875 4677777 5443 333 4889999999999986543311 11122 3 3466653
Q ss_pred CCCCCCccCHHHHHHHHHHHhCCC
Q 012063 407 PEYENGLIKREEIAKVIKGLMHGE 430 (471)
Q Consensus 407 ~~~~~~~~~~~~l~~~i~~~l~~~ 430 (471)
-++++++++|.++++++
T Consensus 377 -------~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -------STAEEYAEAIEKILSLS 393 (419)
T ss_pred -------CCHHHHHHHHHHHHhCC
Confidence 25899999999999863
No 111
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.51 E-value=0.0075 Score=59.36 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=70.4
Q ss_pred CCCeeeccCcchhh---hhcCCcccccccc----cCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC
Q 012063 338 EQGLVVPSWAPQVE---VLGHPSTGGFLTH----CGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 338 ~~~v~v~~~~pq~~---~L~~~~~~~~ItH----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
+.++.+.+++|+.+ +++.++ ++|.. -|. .+++||+++|+|+|+....+ +...+++ -..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~-~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLE-GITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhccc-CCceEEEeCC
Confidence 35778889998654 477788 56542 343 57789999999999976532 3344555 4567644322
Q ss_pred CCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 410 ENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
.+.+++.++|.++++| ++.++ +++..++.+.+.-+-+...+++.+-+.
T Consensus 329 ----~d~~~la~~I~~ll~d---~~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 329 ----MTSDSIISDINRTLAD---PELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred ----CCHHHHHHHHHHHHcC---HHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4699999999999988 44332 333333222234455555555554443
No 112
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.35 E-value=0.004 Score=61.51 Aligned_cols=136 Identities=23% Similarity=0.285 Sum_probs=75.6
Q ss_pred CccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHh-----hcCCC
Q 012063 266 SGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDR-----TKEQG 340 (471)
Q Consensus 266 ~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~ 340 (471)
+..++|.+|.+.....++.+..-.+-|++.+...+|....... -.+.+.++ +..+.
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-------------------~~~~l~~~~~~~Gv~~~R 343 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-------------------GEARLRRRFAAHGVDPDR 343 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-------------------HHHHHHHHHHHTTS-GGG
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-------------------HHHHHHHHHHHcCCChhh
Confidence 4569999999998889999998899999999999998875422 00222221 23346
Q ss_pred eeeccCcchhhhh---cCCcccccc---cccCchhHHHHHhhCCceeecccccc-chhhHHHHHhhhcceeecCCCCCCc
Q 012063 341 LVVPSWAPQVEVL---GHPSTGGFL---THCGWNSTLESIVHGVPLIAWPLYAE-QRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 341 v~v~~~~pq~~~L---~~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~~~D-Q~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
+++.++.++.+-| ..++ +++ ..+|..|++|||+.|||+|.+|--.= ...-+..+.. +|+.-.+-..
T Consensus 344 i~f~~~~~~~ehl~~~~~~D--I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~s---- 416 (468)
T PF13844_consen 344 IIFSPVAPREEHLRRYQLAD--ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIADS---- 416 (468)
T ss_dssp EEEEE---HHHHHHHGGG-S--EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-SS----
T ss_pred EEEcCCCCHHHHHHHhhhCC--EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCCC----
Confidence 7777777765444 3354 443 45788999999999999999994322 2233456666 7877555432
Q ss_pred cCHHHHHHHHHHHhCC
Q 012063 414 IKREEIAKVIKGLMHG 429 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~ 429 (471)
..+-+..++ ++-+|
T Consensus 417 -~~eYv~~Av-~La~D 430 (468)
T PF13844_consen 417 -EEEYVEIAV-RLATD 430 (468)
T ss_dssp -HHHHHHHHH-HHHH-
T ss_pred -HHHHHHHHH-HHhCC
Confidence 134455555 56666
No 113
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.22 E-value=0.0011 Score=54.39 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=50.2
Q ss_pred CCCeeeccCcch-hhhhcCCcccccccc--cC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 338 EQGLVVPSWAPQ-VEVLGHPSTGGFLTH--CG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 338 ~~~v~v~~~~pq-~~~L~~~~~~~~ItH--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.+++.+.+|+++ .++++.+++.+..+. .| -+++.|++++|+|+|+.+.. .....+. .+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE-C-----
Confidence 348999999864 667888887666542 23 48999999999999998761 2233444 5777777 3
Q ss_pred cCHHHHHHHHHHHhCC
Q 012063 414 IKREEIAKVIKGLMHG 429 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~ 429 (471)
-+++++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3699999999999864
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.20 E-value=0.0024 Score=54.96 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=59.5
Q ss_pred CCCeeeccCcch---hhhhcCCcccccccc----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 338 EQGLVVPSWAPQ---VEVLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 338 ~~~v~v~~~~pq---~~~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
..++.+.++.++ ..++..++ ++|+. |.-.++.||+++|+|+|+. |...+...+.+ .+.|..++..
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~-~~~g~~~~~~- 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIND-GVNGFLFDPN- 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGT-TTSEEEESTT-
T ss_pred cccccccccccccccccccccce--eccccccccccccccccccccccceeec----cccCCceeecc-ccceEEeCCC-
Confidence 347888888872 56677778 77765 5567999999999999985 45555566666 6668888764
Q ss_pred CCccCHHHHHHHHHHHhCC
Q 012063 411 NGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~ 429 (471)
+.+++.++|.+++.+
T Consensus 144 ----~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 144 ----DIEELADAIEKLLND 158 (172)
T ss_dssp ----SHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHCC
Confidence 699999999999987
No 115
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.20 E-value=0.0088 Score=58.63 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=69.2
Q ss_pred CeeeccCcc-hhhhhcCCcccccc--cc--cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCcc
Q 012063 340 GLVVPSWAP-QVEVLGHPSTGGFL--TH--CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLI 414 (471)
Q Consensus 340 ~v~v~~~~p-q~~~L~~~~~~~~I--tH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 414 (471)
++.+.++.. -.+++..++ ++| ++ |--++++||+++|+|+|+....+ +...+++ -..|..++..
T Consensus 256 ~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~-~~~g~~~~~~----- 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQH-GVTGALVPPG----- 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcC-CCceEEeCCC-----
Confidence 455555443 357788888 555 33 33569999999999999976533 4444555 4567777654
Q ss_pred CHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 415 KREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+.+++.++|.+++++ ++.++. +++..++.+.+.-+.+..++++.+-+.
T Consensus 324 d~~~la~~i~~l~~~---~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 324 DAVALARALQPYVSD---PAARRA---HGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred CHHHHHHHHHHHHhC---HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 589999999999987 443322 222222222234566666666665544
No 116
>PLN02316 synthase/transferase
Probab=97.16 E-value=0.56 Score=51.38 Aligned_cols=114 Identities=4% Similarity=-0.091 Sum_probs=65.5
Q ss_pred CeeeccCcchh---hhhcCCccccccccc---C-chhHHHHHhhCCceeeccccc--cchhhH----HHHHh--hhccee
Q 012063 340 GLVVPSWAPQV---EVLGHPSTGGFLTHC---G-WNSTLESIVHGVPLIAWPLYA--EQRLNA----VILSE--DLNVAL 404 (471)
Q Consensus 340 ~v~v~~~~pq~---~~L~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~na----~~~~~--~~G~g~ 404 (471)
++.+....+.. .+++.++ +|+.-. | -.+.+||+++|+|.|+....+ |.-... .+-+. .-+-|+
T Consensus 901 rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGf 978 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGF 978 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceE
Confidence 45544333443 4677777 777432 2 258999999999998865543 222111 00011 014577
Q ss_pred ecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 405 RPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 405 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
.+... +++.|..+|.+++.. +......+++..++++...-|-++.+++.++
T Consensus 979 lf~~~-----d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~ 1029 (1036)
T PLN02316 979 SFDGA-----DAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYME 1029 (1036)
T ss_pred EeCCC-----CHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 77654 589999999999864 3333344455555544445565565555544
No 117
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.07 E-value=0.0032 Score=60.70 Aligned_cols=111 Identities=14% Similarity=0.246 Sum_probs=77.7
Q ss_pred CCeeeccCcchhhhhcCC--cccccccc-------cCc------hhHHHHHhhCCceeeccccccchhhHHHHHhhhcce
Q 012063 339 QGLVVPSWAPQVEVLGHP--STGGFLTH-------CGW------NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVA 403 (471)
Q Consensus 339 ~~v~v~~~~pq~~~L~~~--~~~~~ItH-------gG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g 403 (471)
+||...+|+|+.++..+- +.+++... +.+ +-+.+.+++|+|+|+.+ +...+..+++ .++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~-~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVE-NGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHh-CCce
Confidence 389899999987764321 33232221 111 12777899999999864 4567778888 8999
Q ss_pred eecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 012063 404 LRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHK 466 (471)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (471)
+.++ +.+++.+++.++. +++-..|++|++++++.++. |.-..+.++++++.
T Consensus 282 ~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 282 FVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred EEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 9986 3578999998753 44456789999999999986 55556666666654
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.98 E-value=0.0068 Score=59.38 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=63.0
Q ss_pred CCeeeccCcch-hhhhcCCcccccccc--cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccC
Q 012063 339 QGLVVPSWAPQ-VEVLGHPSTGGFLTH--CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIK 415 (471)
Q Consensus 339 ~~v~v~~~~pq-~~~L~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 415 (471)
.++.+.++.++ ..++..+++-++.++ |.-.+++||+++|+|+|+..... .....++. -..|..++.. +
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~~-----d 331 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPKG-----D 331 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCCC-----c
Confidence 46777776655 567888885444454 23458999999999999964331 12334555 5677777654 5
Q ss_pred HHHHHHHHHHHhCCCc-hHHHHHHHHHH
Q 012063 416 REEIAKVIKGLMHGED-GVIIRDRMNRL 442 (471)
Q Consensus 416 ~~~l~~~i~~~l~~~~-~~~~r~~a~~l 442 (471)
.+++.++|.+++.+++ ...+.+++++.
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~ 359 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYEN 359 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999998842 33444444443
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.81 E-value=0.25 Score=51.28 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=50.9
Q ss_pred CeeeccCcchh-hhhcCCcccccccc---cC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCcc
Q 012063 340 GLVVPSWAPQV-EVLGHPSTGGFLTH---CG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLI 414 (471)
Q Consensus 340 ~v~v~~~~pq~-~~L~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 414 (471)
++.+.++.++. ++++.++ +||.- =| -++++||+++|+|+|+.-..+... +.. -+-|... -
T Consensus 602 ~V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~-g~nGll~-------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS-FPNCLTY-------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee-cCCeEec-------C
Confidence 35566676654 4788888 67652 23 458999999999999976654321 222 2223222 2
Q ss_pred CHHHHHHHHHHHhCCC
Q 012063 415 KREEIAKVIKGLMHGE 430 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~~ 430 (471)
+.+++.++|.++|.++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 5899999999999874
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.64 E-value=0.22 Score=44.25 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=34.1
Q ss_pred CCeeeccCcch----hhhhcCCcccccccccC----chhHHHHHhhCCceeeccccccc
Q 012063 339 QGLVVPSWAPQ----VEVLGHPSTGGFLTHCG----WNSTLESIVHGVPLIAWPLYAEQ 389 (471)
Q Consensus 339 ~~v~v~~~~pq----~~~L~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ 389 (471)
.|+.+.+++++ ..++..++ ++|+-.. -+++.||+++|+|+|+.+..+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 36777777532 22333366 6776665 68999999999999998776543
No 121
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.63 E-value=0.028 Score=57.25 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=61.3
Q ss_pred CCCeeeccCcchhhhhcCCccccccc---ccCc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCC--CC
Q 012063 338 EQGLVVPSWAPQVEVLGHPSTGGFLT---HCGW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEY--EN 411 (471)
Q Consensus 338 ~~~v~v~~~~pq~~~L~~~~~~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~--~~ 411 (471)
.++|...++.+-.+++..++ +||. .=|+ .+++||+++|+|+|+.-..+ .+...+++ -.-|..++.. .+
T Consensus 375 ~~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~-g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIED-NKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccC-CCCEEEEeCCcccc
Confidence 34678888888888999888 5664 3343 58999999999999975421 12333444 3456665421 10
Q ss_pred CccC-HHHHHHHHHHHhCCCchHHHHHHHHH
Q 012063 412 GLIK-REEIAKVIKGLMHGEDGVIIRDRMNR 441 (471)
Q Consensus 412 ~~~~-~~~l~~~i~~~l~~~~~~~~r~~a~~ 441 (471)
..-+ .++++++|.++++++....|.+++++
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~ 479 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQ 479 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 0012 78899999999954223344444444
No 122
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.63 E-value=0.096 Score=53.25 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCCeeeccCcchhhhhcCCcccccccc----cCchhHHHHHhhCCceeeccccccchhhHHHHHhhh-----c-ceeecC
Q 012063 338 EQGLVVPSWAPQVEVLGHPSTGGFLTH----CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDL-----N-VALRPP 407 (471)
Q Consensus 338 ~~~v~v~~~~pq~~~L~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~-----G-~g~~~~ 407 (471)
.++|.+.+...-.++++.++ ++|.- |--++++||+++|+|+|+-.. ......+++ . | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aD--v~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~-~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLD--VLVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEG-ADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCC--EEEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcC-CcccccCCceEEEC
Confidence 35788877655677888888 55433 334689999999999999533 333333333 2 2 677776
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCchHHHHHH
Q 012063 408 EYENGLIKREEIAKVIKGLMHGEDGVIIRDR 438 (471)
Q Consensus 408 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~ 438 (471)
.. +.+++.++|.++++| ++.+++
T Consensus 426 ~~-----d~~~la~ai~~ll~~---~~~~~~ 448 (475)
T cd03813 426 PA-----DPEALARAILRLLKD---PELRRA 448 (475)
T ss_pred CC-----CHHHHHHHHHHHhcC---HHHHHH
Confidence 54 599999999999988 554443
No 123
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.58 E-value=0.0029 Score=48.32 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=43.7
Q ss_pred ccchhhhhccCCCccEEEEEeCCCcCC---CH--HhHHHHHHHHHhCCCceEEEEecCC
Q 012063 254 QCMCIRWLDNQASGSVLFVSFGSGGTL---SY--DQLEELALGLELSEQQFLWVVKSPD 307 (471)
Q Consensus 254 ~~~~~~wl~~~~~~~~i~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~~~~~~~~~ 307 (471)
...+.+|+...+.++.|.||+||.... .. ..+..++++++..+..++..+....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 456778998888899999999998543 22 4688999999999999998887654
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.13 E-value=0.14 Score=50.87 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=67.9
Q ss_pred hhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceee-cCCCCCCccCHHHHHHHHHHHhC
Q 012063 350 VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALR-PPEYENGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 350 ~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~-~~~~~~~~~~~~~l~~~i~~~l~ 428 (471)
..++++++ ++|..= +=++.-|+..|||.+.+++ | +-....++. +|..-. .+..+ ++.++|.+.+.++++
T Consensus 322 ~~iIs~~d--l~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~---l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 322 GKILGACE--LTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRH---LLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHhhCC--EEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhh---CCHHHHHHHHHHHHh
Confidence 37788888 887632 2346678899999999987 4 334445677 888755 56565 889999999999998
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 429 GEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 429 ~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+. ++++++.++--+.+++ .+..-+.+++++|.
T Consensus 392 ~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 392 QL--PALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred CH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 64 4455554444444443 23445556666654
No 125
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.96 E-value=0.17 Score=51.43 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=69.4
Q ss_pred CCCeeeccCcch-hhhhcCCccccccc---ccC-chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 338 EQGLVVPSWAPQ-VEVLGHPSTGGFLT---HCG-WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 338 ~~~v~v~~~~pq-~~~L~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
.++|.+.+|..+ ..+|..++ +||. .-| -+++.||+++|+|+|+.... .+...+.+ -..|..++..+
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~d-G~nG~LVp~~D-- 524 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIE-GVSGFILDDAQ-- 524 (578)
T ss_pred CCcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHccc-CCcEEEECCCC--
Confidence 357888888654 45677788 7775 344 45999999999999987543 34455556 56787776543
Q ss_pred ccCHHHHHHHHH---HHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012063 413 LIKREEIAKVIK---GLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 413 ~~~~~~l~~~i~---~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (471)
.+.+.+++. ++... .+....+++..++.+.+.-|.+..+++..+-+..+
T Consensus 525 ---~~aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~~ 576 (578)
T PRK15490 525 ---TVNLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIASQ 576 (578)
T ss_pred ---hhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 455555442 22221 11122344444444444567777777776655443
No 126
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.74 E-value=0.097 Score=52.54 Aligned_cols=137 Identities=17% Similarity=0.211 Sum_probs=89.2
Q ss_pred CccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHh-----hcCCC
Q 012063 266 SGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDR-----TKEQG 340 (471)
Q Consensus 266 ~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~ 340 (471)
+..+||.+|--....++..++.-++-|++.+..++|....+.. | + ..|... ..++.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~---------g--------e--~rf~ty~~~~Gl~p~r 817 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV---------G--------E--QRFRTYAEQLGLEPDR 817 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc---------c--------h--HHHHHHHHHhCCCccc
Confidence 3459999998888888998998889999999999999987532 0 0 122211 22335
Q ss_pred eeeccCcc-----hhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhh-HHHHHhhhcceeecCCCCCCcc
Q 012063 341 LVVPSWAP-----QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLN-AVILSEDLNVALRPPEYENGLI 414 (471)
Q Consensus 341 v~v~~~~p-----q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n-a~~~~~~~G~g~~~~~~~~~~~ 414 (471)
+++.+-+. +...|..-..+-+.+. |.-|.++.|++|||||.+|...---.. +..+.. +|+|-.+-+.+
T Consensus 818 iifs~va~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak~~---- 891 (966)
T KOG4626|consen 818 IIFSPVAAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAKNR---- 891 (966)
T ss_pred eeeccccchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhhhH----
Confidence 55544433 2333444444556664 588999999999999999986543333 445666 89987554332
Q ss_pred CHHHHHHHHHHHhCC
Q 012063 415 KREEIAKVIKGLMHG 429 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~ 429 (471)
.|-+.-+| ++-+|
T Consensus 892 -eEY~~iaV-~Latd 904 (966)
T KOG4626|consen 892 -EEYVQIAV-RLATD 904 (966)
T ss_pred -HHHHHHHH-HhhcC
Confidence 44445555 44455
No 127
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.17 E-value=0.051 Score=45.48 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHh
Q 012063 21 PHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIKRSLSSVRDVFKSL 100 (471)
Q Consensus 21 P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 100 (471)
=+..|+++|+++ ||+|+++++...... .. ....++.+..++............ ....+.+.+ .
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l--~ 68 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPED---DE---EEEDGVRVHRLPLPRRPWPLRLLR--------FLRRLRRLL--A 68 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG----S---EEETTEEEEEE--S-SSSGGGHCC--------HHHHHHHHC--H
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCcc---cc---cccCCceEEeccCCccchhhhhHH--------HHHHHHHHH--h
Confidence 367899999876 999999996433320 00 112357776665332211111100 011222222 1
Q ss_pred hcCCCccEEEeCCCCcc-HHHHHH-HhCCceEEEe
Q 012063 101 VASTHLMALVVDPFGTD-VFDVAR-EFYVPSYLYF 133 (471)
Q Consensus 101 ~~~~~~D~VI~D~~~~~-~~~~A~-~lgIP~v~~~ 133 (471)
.+..+||+|.+...... ...+++ ..++|.+...
T Consensus 69 ~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 69 ARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred hhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 15569999997653322 223555 7899977643
No 128
>PHA01633 putative glycosyl transferase group 1
Probab=95.16 E-value=0.62 Score=44.64 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=52.7
Q ss_pred Ceeec---cCcchh---hhhcCCcccccccc---cCc-hhHHHHHhhCCceeeccc------cccc------hhhHHHHH
Q 012063 340 GLVVP---SWAPQV---EVLGHPSTGGFLTH---CGW-NSTLESIVHGVPLIAWPL------YAEQ------RLNAVILS 397 (471)
Q Consensus 340 ~v~v~---~~~pq~---~~L~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~------~~DQ------~~na~~~~ 397 (471)
++.+. +++++. ++++.++ +||.- =|+ .+++||+++|+|+|+--. .+|+ ..+.....
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 67665 455543 5567777 77753 344 478899999999998533 2332 22332222
Q ss_pred h-hhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 398 E-DLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 398 ~-~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
. +.|.|..++. .++++++++|.+++..
T Consensus 280 ~~~~g~g~~~~~-----~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 280 DKEHGQKWKIHK-----FQIEDMANAIILAFEL 307 (335)
T ss_pred CcccCceeeecC-----CCHHHHHHHHHHHHhc
Confidence 1 1466666654 5799999999998653
No 129
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.95 E-value=0.48 Score=48.16 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=64.8
Q ss_pred CCeeeccCcchh---hhhcCCcccccccc---cCch-hHHHHHhhCCceeeccccc--cchhhHHHHHhhhcceeecCCC
Q 012063 339 QGLVVPSWAPQV---EVLGHPSTGGFLTH---CGWN-STLESIVHGVPLIAWPLYA--EQRLNAVILSEDLNVALRPPEY 409 (471)
Q Consensus 339 ~~v~v~~~~pq~---~~L~~~~~~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~~G~g~~~~~~ 409 (471)
.++.+....++. .+++.++ ++|.- -|.| +.+||+++|+|.|+....+ |.-.+...-.. .+.|+.+...
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~-~~~G~l~~~~ 422 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAE-SGTGFLFEEY 422 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCC-CCceEEeCCC
Confidence 355554444443 4677777 66632 2444 7889999999999876543 22111100011 2778887664
Q ss_pred CCCccCHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 410 ENGLIKREEIAKVIKGLMH----GEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~----~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+++++.++|.+++. + ++.++ ++++.. ....-|-++..+++++-+.
T Consensus 423 -----d~~~la~~i~~~l~~~~~~---~~~~~---~~~~~~---~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 423 -----DPGALLAALSRALRLYRQD---PSLWE---ALQKNA---MSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred -----CHHHHHHHHHHHHHHHhcC---HHHHH---HHHHHH---hccCCCcHHHHHHHHHHHH
Confidence 58999999999886 4 33222 222221 1234566666666665544
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.87 E-value=3.8 Score=39.78 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=67.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCchhhhhhhccCCCCeE-EEEcCCCCCCcchhH
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPTIGPPSKAITSVLQGLPEHIN-HVLLPPVNFEEDVKA 78 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~~~~~ 78 (471)
|++.+++|+++-....|++.=..++.+.|.++. +.+|++++.+.+. .+....| .++ ++.++.... ..
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~------~l~~~~P-~id~vi~~~~~~~----~~ 69 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTI------PILSENP-EINALYGIKNKKA----GA 69 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChH------HHhccCC-CceEEEEeccccc----cH
Confidence 888889999999999999999999999996654 5899999977433 3333333 243 233322110 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEE
Q 012063 79 EIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYL 131 (471)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 131 (471)
...+. ....++.+ ++..++|++|.=........++...|.|..+
T Consensus 70 ~~~~~--------~~~~l~~~-lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 70 SEKIK--------NFFSLIKV-LRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHH--------HHHHHHHH-HhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00111 11122233 2445899999533333334566677887654
No 131
>PHA01630 putative group 1 glycosyl transferase
Probab=94.68 E-value=0.86 Score=43.81 Aligned_cols=111 Identities=8% Similarity=-0.022 Sum_probs=60.3
Q ss_pred Ccchhh---hhcCCcccccc--cc-cC-chhHHHHHhhCCceeeccccc--cchhh---HHHHHh----------hhcce
Q 012063 346 WAPQVE---VLGHPSTGGFL--TH-CG-WNSTLESIVHGVPLIAWPLYA--EQRLN---AVILSE----------DLNVA 403 (471)
Q Consensus 346 ~~pq~~---~L~~~~~~~~I--tH-gG-~~s~~eal~~GvP~l~~P~~~--DQ~~n---a~~~~~----------~~G~g 403 (471)
++|+.+ +++.++ +|| ++ .| -.++.||+++|+|.|+.-..+ |.-.+ +-.+.. ..++|
T Consensus 197 ~v~~~~l~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 355443 467777 554 22 33 458999999999999976543 32211 111110 01245
Q ss_pred eecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 404 LRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
..+. .+.+++.+++.+++.+.+.+..+++.+.-++..+ +.-|-++..+++.+-+.
T Consensus 275 ~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 275 YFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILE 329 (331)
T ss_pred cccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHh
Confidence 4443 3467788888888876321234444433333333 24666666666665543
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.81 Score=45.97 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=85.1
Q ss_pred CCccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHH---h--hcCC
Q 012063 265 ASGSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLD---R--TKEQ 339 (471)
Q Consensus 265 ~~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~--~~~~ 339 (471)
+++-+||+||+...-..++.+..=+.-|+..+..++|..+.+.+ ..+-..+.+ + ....
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-----------------~~~~~~l~~la~~~Gv~~e 489 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-----------------AEINARLRDLAEREGVDSE 489 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-----------------HHHHHHHHHHHHHcCCChh
Confidence 35679999999998888998888788888889999999877543 011122221 1 2233
Q ss_pred CeeeccCcchh---hhhcCCccccccc---ccCchhHHHHHhhCCceeeccccccchhh--HH-HHHhhhcceeecCCCC
Q 012063 340 GLVVPSWAPQV---EVLGHPSTGGFLT---HCGWNSTLESIVHGVPLIAWPLYAEQRLN--AV-ILSEDLNVALRPPEYE 410 (471)
Q Consensus 340 ~v~v~~~~pq~---~~L~~~~~~~~It---HgG~~s~~eal~~GvP~l~~P~~~DQ~~n--a~-~~~~~~G~g~~~~~~~ 410 (471)
.+++.+-.|.. +=+.-++ +|.- -||+-|+.|+|..|||+|..+ ++|+.- +. .+.. +|+--.+-..
T Consensus 490 RL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~-agi~e~vA~s- 563 (620)
T COG3914 490 RLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATN-AGIPELVADS- 563 (620)
T ss_pred heeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHh-cCCchhhcCC-
Confidence 55555555543 3333355 6653 589999999999999999987 788732 22 2333 4443333322
Q ss_pred CCccCHHHHHHHHH
Q 012063 411 NGLIKREEIAKVIK 424 (471)
Q Consensus 411 ~~~~~~~~l~~~i~ 424 (471)
.++-+..+|+
T Consensus 564 ----~~dYV~~av~ 573 (620)
T COG3914 564 ----RADYVEKAVA 573 (620)
T ss_pred ----HHHHHHHHHH
Confidence 2566677763
No 133
>PRK14098 glycogen synthase; Provisional
Probab=94.47 E-value=0.65 Score=47.31 Aligned_cols=82 Identities=7% Similarity=-0.007 Sum_probs=52.6
Q ss_pred CCCeeeccCcchh---hhhcCCccccccccc---Cc-hhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 338 EQGLVVPSWAPQV---EVLGHPSTGGFLTHC---GW-NSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 338 ~~~v~v~~~~pq~---~~L~~~~~~~~ItHg---G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
+.++.+..+.+.. .+++.++ +|+.-. |. .+.+||+++|+|.|+....+-........++ -+.|..++..
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~-~~~G~l~~~~- 436 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSED-KGSGFIFHDY- 436 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCC-CCceeEeCCC-
Confidence 3577777777764 5677788 666432 22 3778999999998887654321111011112 3667777654
Q ss_pred CCccCHHHHHHHHHHHh
Q 012063 411 NGLIKREEIAKVIKGLM 427 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l 427 (471)
+++++.++|.+++
T Consensus 437 ----d~~~la~ai~~~l 449 (489)
T PRK14098 437 ----TPEALVAKLGEAL 449 (489)
T ss_pred ----CHHHHHHHHHHHH
Confidence 5899999998876
No 134
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.12 E-value=1.5 Score=37.34 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCC-cc-hhHHHHHHHHHHHhHHHHHHHHHHhhc-CCCccEE
Q 012063 33 HDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFE-ED-VKAEIQIVLAIKRSLSSVRDVFKSLVA-STHLMAL 109 (471)
Q Consensus 33 ~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~D~V 109 (471)
.||+|++++...... .+.+++.+.+...... .. ......+...+... ....+.+.++.+ ...||+|
T Consensus 2 ~gh~v~fl~~~~~~~----------~~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~~Gf~PDvI 70 (171)
T PF12000_consen 2 RGHEVVFLTERKRPP----------IPPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRG-QAVARAARQLRAQGFVPDVI 70 (171)
T ss_pred CCCEEEEEecCCCCC----------CCCCcEEEEeCCCCCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHcCCCCCEE
Confidence 399999999543332 1135666655331111 11 11222333322222 222233333322 4689999
Q ss_pred EeCCCCccHHHHHHHh-CCceEEEec
Q 012063 110 VVDPFGTDVFDVAREF-YVPSYLYFL 134 (471)
Q Consensus 110 I~D~~~~~~~~~A~~l-gIP~v~~~~ 134 (471)
|..+-...++.+-+.+ ++|.+.++-
T Consensus 71 ~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 71 IAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred EEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 9998655555677778 899887653
No 135
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.08 E-value=0.93 Score=34.08 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=50.5
Q ss_pred ccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhc-ceeecCCCCCCccCHHHHHHHHHHHhCCCchHHH-HHHHHH
Q 012063 364 HCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLN-VALRPPEYENGLIKREEIAKVIKGLMHGEDGVII-RDRMNR 441 (471)
Q Consensus 364 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~-r~~a~~ 441 (471)
+|-..-+.|++++|+|+|.-.. ......+.. | -++... +.+++.++|..+++| +.. ++.+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~-------~~~el~~~i~~ll~~---~~~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN-------DPEELAEKIEYLLEN---PEERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC-------CHHHHHHHHHHHHCC---HHHHHHHHHH
Confidence 4455689999999999998754 222222222 4 333332 599999999999998 543 333334
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHH
Q 012063 442 LKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 442 l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
-.+.+. ..-+.++-+++|+
T Consensus 73 a~~~v~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVL----KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH----HhCCHHHHHHHHH
Confidence 444443 3556566666654
No 136
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=92.67 E-value=1.3 Score=36.21 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=55.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHHH
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIK 87 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~ 87 (471)
|+++.--...| ...+++.|.++ ||+|++++...... .. ....++.++.++.... .... .+.
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~--~~-----~~~~~i~~~~~~~~~k----~~~~----~~~ 62 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYE--KY-----EIIEGIKVIRLPSPRK----SPLN----YIK 62 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCch--hh-----hHhCCeEEEEecCCCC----ccHH----HHH
Confidence 56666545555 56889999876 99999999843321 01 1123677777642210 0111 111
Q ss_pred HhHHHHHHHHHHhhcCCCccEEEeCCCCccH---HHHHHHhC-CceEE
Q 012063 88 RSLSSVRDVFKSLVASTHLMALVVDPFGTDV---FDVAREFY-VPSYL 131 (471)
Q Consensus 88 ~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~---~~~A~~lg-IP~v~ 131 (471)
. -.+ ..++++.+||+|.+......+ ..+++..+ +|.+.
T Consensus 63 -~-~~l----~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 63 -Y-FRL----RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred -H-HHH----HHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 1 123 333455599999877654322 23567788 88764
No 137
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.21 E-value=1.4 Score=44.36 Aligned_cols=104 Identities=17% Similarity=0.105 Sum_probs=69.6
Q ss_pred ccCcchhhh---hcCCccccccc---ccCch-hHHHHHhhCCc----eeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 344 PSWAPQVEV---LGHPSTGGFLT---HCGWN-STLESIVHGVP----LIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 344 ~~~~pq~~~---L~~~~~~~~It---HgG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
.+.+++.++ +..++ +|+. +=|+| +..||+++|+| +|+--+.+-.. . ++-|+.+++.
T Consensus 341 ~~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-------~-l~~gllVnP~--- 407 (456)
T TIGR02400 341 NRSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-------E-LNGALLVNPY--- 407 (456)
T ss_pred cCCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-------H-hCCcEEECCC---
Confidence 345566554 55677 6664 44655 77799999999 66655544221 2 2346666664
Q ss_pred ccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 413 LIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+.++++++|.++|+.+. ++.+++.+++++.+.+ -+...-.+++++++.
T Consensus 408 --d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 --DIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred --CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 59999999999997432 4566667777776654 577777888887764
No 138
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.52 E-value=12 Score=34.97 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=66.3
Q ss_pred CCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHHHHhHHH
Q 012063 13 SPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIKRSLSS 92 (471)
Q Consensus 13 ~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 92 (471)
..-.-|+.-+-.|-++|.++ ||+|.+.+-.... ..++.... |+.+..+...... .....+.....+ .-.
T Consensus 7 I~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~----v~~LLd~y--gf~~~~Igk~g~~---tl~~Kl~~~~eR-~~~ 75 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGV----VTELLDLY--GFPYKSIGKHGGV---TLKEKLLESAER-VYK 75 (346)
T ss_pred cCCcchhhHHHHHHHHHHhC-CeEEEEEEeecCc----HHHHHHHh--CCCeEeecccCCc---cHHHHHHHHHHH-HHH
Confidence 34456888899999999775 9999987744332 23333322 4666665443321 111122222221 123
Q ss_pred HHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecch
Q 012063 93 VRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 93 l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~ 136 (471)
+.++ ..+.+||+.+. -.++....+|--+|+|.+.+.-..
T Consensus 76 L~ki----~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 76 LSKI----IAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHH----HhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 3333 34459999999 557777889999999999987553
No 139
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.67 E-value=4.3 Score=34.74 Aligned_cols=116 Identities=13% Similarity=0.025 Sum_probs=54.5
Q ss_pred EcCCCccCHHHHHHHHHHH-HhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHHHHh
Q 012063 11 MPSPGMGHLIPHVELAKQL-VLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIKRS 89 (471)
Q Consensus 11 ~~~p~~GH~~P~l~La~~L-~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 89 (471)
+-.++-||+.=|+.|.+.+ .++..++..+++...........++..+......+..+|.... ...........++...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~-v~q~~~~~~~~~l~~~ 81 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRARE-VGQSYLTSIFTTLRAF 81 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEE-echhhHhhHHHHHHHH
Confidence 3347889999999999999 3332344444543322221112222222121113333332111 1111122222222222
Q ss_pred HHHHHHHHHHhhcCCCccEEEeCCCCccH--HHHHHHh------CCceEEE
Q 012063 90 LSSVRDVFKSLVASTHLMALVVDPFGTDV--FDVAREF------YVPSYLY 132 (471)
Q Consensus 90 ~~~l~~~l~~~~~~~~~D~VI~D~~~~~~--~~~A~~l------gIP~v~~ 132 (471)
...+.-+ ...+||+||+.....+. ..+|+.+ |.+.|..
T Consensus 82 ~~~~~il-----~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 82 LQSLRIL-----RRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHHH-----HHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 2222111 22389999987644333 3578888 8886543
No 140
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.48 E-value=0.66 Score=42.65 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=66.9
Q ss_pred ccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccch--hhHHHHHhhhcceeecCCCCCCccCHHHHHH
Q 012063 344 PSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQR--LNAVILSEDLNVALRPPEYENGLIKREEIAK 421 (471)
Q Consensus 344 ~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~--~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~ 421 (471)
..|-...++|.+++ +.|--.| -.+-+++--|||.|.+|-.+-|+ ..|.|=.+-+|+.+.+-.. +++...
T Consensus 300 lsqqsfadiLH~ad--aalgmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~------~aq~a~ 370 (412)
T COG4370 300 LSQQSFADILHAAD--AALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP------EAQAAA 370 (412)
T ss_pred EeHHHHHHHHHHHH--HHHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC------chhhHH
Confidence 35556678888887 5554444 23455788999999999999995 4467666657999887643 233334
Q ss_pred H-HHHHhCCCchHHHHHHHH-HHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 422 V-IKGLMHGEDGVIIRDRMN-RLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 422 ~-i~~~l~~~~~~~~r~~a~-~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
. .+++|.| +++..+++ .=++++.++ |...+-.|++-
T Consensus 371 ~~~q~ll~d---p~r~~air~nGqrRiGqa----Gaa~rIAe~l~ 408 (412)
T COG4370 371 QAVQELLGD---PQRLTAIRHNGQRRIGQA----GAARRIAEELG 408 (412)
T ss_pred HHHHHHhcC---hHHHHHHHhcchhhccCc----chHHHHHHHHH
Confidence 4 4448888 67766666 334445542 44444444443
No 141
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=89.55 E-value=14 Score=35.71 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=63.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCchhhhhhhccCCCCeE-EEEcCCCCCCcchhHHHHHHH
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPTIGPPSKAITSVLQGLPEHIN-HVLLPPVNFEEDVKAEIQIVL 84 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~~~~~~~~~~~ 84 (471)
||+++-....|++.=..++.++|.++. +.+|++++.+.+ ..+....| .++ ++.++..... .. ...+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~------~~l~~~~p-~vd~vi~~~~~~~~--~~-~~~~-- 68 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQET------IPILSENP-DINALYGLDRKKAK--AG-ERKL-- 68 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcCh------HHHHhcCC-CccEEEEeChhhhc--ch-HHHH--
Confidence 588888899999999999999997654 589999997733 33434334 243 3333221100 00 0001
Q ss_pred HHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEe
Q 012063 85 AIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYF 133 (471)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~ 133 (471)
....+++.. ++..++|++|.=........++...|+|.-+.+
T Consensus 69 ------~~~~~l~~~-lr~~~yD~vidl~~~~~s~ll~~l~~a~~riG~ 110 (344)
T TIGR02201 69 ------ANQFHLIKV-LRANRYDLVVNLTDQWMVAILVKLLNARVKIGF 110 (344)
T ss_pred ------HHHHHHHHH-HHhCCCCEEEECCcchHHHHHHHhcCCCeEEee
Confidence 111122233 244589999853333445568888899865543
No 142
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.35 E-value=1 Score=46.02 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=58.9
Q ss_pred CeeeccCcc--h-hhhhcCCccccccccc---CchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 340 GLVVPSWAP--Q-VEVLGHPSTGGFLTHC---GWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 340 ~v~v~~~~p--q-~~~L~~~~~~~~ItHg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.|.+.++.. + ..++.++. ++|.=+ |.++.+||+.+|+|+| .......|++ ..=|..+ .
T Consensus 410 ~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li--~---- 473 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII--D---- 473 (519)
T ss_pred EEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe--C----
Confidence 677777777 3 56677777 777655 7789999999999999 2223333444 3345554 1
Q ss_pred cCHHHHHHHHHHHhCCCc-hHHHHHHHHHHHH
Q 012063 414 IKREEIAKVIKGLMHGED-GVIIRDRMNRLKD 444 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~-~~~~r~~a~~l~~ 444 (471)
+.++|.++|..+|.+.. +..+...+-+.++
T Consensus 474 -d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~ 504 (519)
T TIGR03713 474 -DISELLKALDYYLDNLKNWNYSLAYSIKLID 504 (519)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 58999999999999842 4444444444443
No 143
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=89.29 E-value=3.9 Score=35.85 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
|+|++.--=+. +---+..|+++| ++.||+|++++|..++.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L-~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKAL-SALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHH-TTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHH-HhcCCeEEEEeCCCCCc
Confidence 45555544222 333467899999 55589999999876654
No 144
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=88.04 E-value=2.2 Score=43.08 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=63.0
Q ss_pred eccCcchhhh---hcCCccccccc---ccCch-hHHHHHhhCCc----eeeccccccchhhHHHHHhhhcceeecCCCCC
Q 012063 343 VPSWAPQVEV---LGHPSTGGFLT---HCGWN-STLESIVHGVP----LIAWPLYAEQRLNAVILSEDLNVALRPPEYEN 411 (471)
Q Consensus 343 v~~~~pq~~~---L~~~~~~~~It---HgG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 411 (471)
+.+++++.++ +..++ +||. +-|+| ++.||+++|+| +|+--+.+-. +. ..-|+.+++.
T Consensus 345 ~~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-------~~-~~~g~lv~p~-- 412 (460)
T cd03788 345 LYRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA-------EE-LSGALLVNPY-- 412 (460)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEeccccch-------hh-cCCCEEECCC--
Confidence 3466776554 66677 5553 45655 67899999999 5444222211 11 1235666654
Q ss_pred CccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 012063 412 GLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKW 467 (471)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (471)
+.++++++|.++++++. ++.+++.++.++.+.+ -+...-++++++++
T Consensus 413 ---d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 413 ---DIDEVADAIHRALTMPL-EERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred ---CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 58999999999998632 2334444444444432 56677777877765
No 145
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=87.97 E-value=2 Score=41.04 Aligned_cols=133 Identities=10% Similarity=-0.014 Sum_probs=74.1
Q ss_pred ccEEEEEeCCC---cCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeee
Q 012063 267 GSVLFVSFGSG---GTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVV 343 (471)
Q Consensus 267 ~~~i~vs~GS~---~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v 343 (471)
++.|.+.-|+. -.++.+.+.++++.|...+.++++..++..+ ...-+.+.+.....++.-
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e-----------------~~~~~~i~~~~~~~~l~g 241 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE-----------------KQRAERIAEALPGAVVLP 241 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----------------HHHHHHHHhhCCCCeecC
Confidence 45666666653 4567788899999987666666654443211 001111222111112111
Q ss_pred ccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcce---eecC-CCCCCccCHHH
Q 012063 344 PSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVA---LRPP-EYENGLIKREE 418 (471)
Q Consensus 344 ~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g---~~~~-~~~~~~~~~~~ 418 (471)
.--++| .+++++++ +||+.- .|.++=|.+.|+|.|++ +... +..+..= +|-. +.-. -+ .+++++
T Consensus 242 ~~sL~el~ali~~a~--l~I~~D-Sgp~HlAaa~g~P~i~l-fg~t---~p~~~~P-~~~~~~~~~~~~~~---~I~~~~ 310 (319)
T TIGR02193 242 KMSLAEVAALLAGAD--AVVGVD-TGLTHLAAALDKPTVTL-YGAT---DPGRTGG-YGKPNVALLGESGA---NPTPDE 310 (319)
T ss_pred CCCHHHHHHHHHcCC--EEEeCC-ChHHHHHHHcCCCEEEE-ECCC---CHhhccc-CCCCceEEccCccC---CCCHHH
Confidence 112333 78888999 999954 68899999999999986 2111 1111111 1111 1111 23 389999
Q ss_pred HHHHHHHHh
Q 012063 419 IAKVIKGLM 427 (471)
Q Consensus 419 l~~~i~~~l 427 (471)
+.++++++|
T Consensus 311 V~~ai~~~~ 319 (319)
T TIGR02193 311 VLAALEELL 319 (319)
T ss_pred HHHHHHhhC
Confidence 999998765
No 146
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=86.62 E-value=9.4 Score=32.01 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 14 PGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 14 p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
...|=-.-+..|+++|+++ ||+|+++++....
T Consensus 10 ~~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKR-GHEVTVVSPGVKD 41 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHT-T-EEEEEESS-TT
T ss_pred CCChHHHHHHHHHHHHHHC-CCEEEEEEcCCCc
Confidence 3456667789999999876 9999999875433
No 147
>PLN02939 transferase, transferring glycosyl groups
Probab=86.50 E-value=9.4 Score=41.66 Aligned_cols=83 Identities=5% Similarity=0.021 Sum_probs=52.8
Q ss_pred CCeeeccCcchh---hhhcCCccccccccc---C-chhHHHHHhhCCceeeccccc--cchhh--HHHHHhhhcceeecC
Q 012063 339 QGLVVPSWAPQV---EVLGHPSTGGFLTHC---G-WNSTLESIVHGVPLIAWPLYA--EQRLN--AVILSEDLNVALRPP 407 (471)
Q Consensus 339 ~~v~v~~~~pq~---~~L~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~~~~~~G~g~~~~ 407 (471)
.+|.+..+.+.. .+++.++ +||.-. | -.+.+||+++|+|.|+....+ |--.+ ...+...-+-|..+.
T Consensus 837 drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777764 4777788 777532 2 248999999999999876654 22211 111111024576665
Q ss_pred CCCCCccCHHHHHHHHHHHhC
Q 012063 408 EYENGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 408 ~~~~~~~~~~~l~~~i~~~l~ 428 (471)
.. +++++.++|.+++.
T Consensus 915 ~~-----D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 TP-----DEQGLNSALERAFN 930 (977)
T ss_pred CC-----CHHHHHHHHHHHHH
Confidence 53 58889888888764
No 148
>PRK14099 glycogen synthase; Provisional
Probab=85.77 E-value=13 Score=37.99 Aligned_cols=81 Identities=10% Similarity=0.153 Sum_probs=45.5
Q ss_pred eeccCcchhh-hh-cCCccccccc---ccCch-hHHHHHhhCCceeeccccc--cchhhHHHHHhh--hcceeecCCCCC
Q 012063 342 VVPSWAPQVE-VL-GHPSTGGFLT---HCGWN-STLESIVHGVPLIAWPLYA--EQRLNAVILSED--LNVALRPPEYEN 411 (471)
Q Consensus 342 ~v~~~~pq~~-~L-~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~--~G~g~~~~~~~~ 411 (471)
.+.+|-.+.. ++ +.++ +|+. +=|.| +.+||+++|+|.|+....+ |--.......+. .+.|+.++..
T Consensus 354 ~~~G~~~~l~~~~~a~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~-- 429 (485)
T PRK14099 354 VVIGYDEALAHLIQAGAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV-- 429 (485)
T ss_pred EEeCCCHHHHHHHHhcCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC--
Confidence 4556633322 22 2355 6764 34444 6789999998777754432 322111111110 1568887764
Q ss_pred CccCHHHHHHHHHH---HhCC
Q 012063 412 GLIKREEIAKVIKG---LMHG 429 (471)
Q Consensus 412 ~~~~~~~l~~~i~~---~l~~ 429 (471)
+++++.++|.+ +++|
T Consensus 430 ---d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 430 ---TADALAAALRKTAALFAD 447 (485)
T ss_pred ---CHHHHHHHHHHHHHHhcC
Confidence 58999999987 5555
No 149
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.28 E-value=16 Score=36.56 Aligned_cols=91 Identities=10% Similarity=0.133 Sum_probs=60.5
Q ss_pred CCeee-ccCcc-h-hhhhcCCcccccccccC--chhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 339 QGLVV-PSWAP-Q-VEVLGHPSTGGFLTHCG--WNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 339 ~~v~v-~~~~p-q-~~~L~~~~~~~~ItHgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
.|+++ .++.+ + .+++..+++=+-|.||. ..++.||+.+|+|++..=...... .+.. . |..+...
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~----~~i~--~-g~l~~~~---- 396 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR----DFIA--S-ENIFEHN---- 396 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc----cccc--C-CceecCC----
Confidence 45554 45566 2 78899999888888876 669999999999999874332211 1111 1 4444443
Q ss_pred cCHHHHHHHHHHHhCCCchH-HHHHHHHHHHH
Q 012063 414 IKREEIAKVIKGLMHGEDGV-IIRDRMNRLKD 444 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~~~-~~r~~a~~l~~ 444 (471)
+.+++.++|.++|.+ + .++++..+-++
T Consensus 397 -~~~~m~~~i~~lL~d---~~~~~~~~~~q~~ 424 (438)
T TIGR02919 397 -EVDQLISKLKDLLND---PNQFRELLEQQRE 424 (438)
T ss_pred -CHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 489999999999988 5 34444444333
No 150
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.51 E-value=34 Score=31.73 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEEeCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHD-ISVTFLVPTIG 45 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~G-h~Vt~~~~~~~ 45 (471)
+|+++-..+.|++.=+.++.++|.++.+ -+|++++.+..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~ 40 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWF 40 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhh
Confidence 5788888999999999999999977633 79999997733
No 151
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=84.33 E-value=10 Score=35.95 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=43.6
Q ss_pred chhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchh----hHHHHHhhhcceeecCCC
Q 012063 348 PQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRL----NAVILSEDLNVALRPPEY 409 (471)
Q Consensus 348 pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~----na~~~~~~~G~g~~~~~~ 409 (471)
|....|+.++. +|||=-=.+-+.||+..|+|+.++|... +.. -...+++ .|+-..+...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~~ 283 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTGW 283 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCCc
Confidence 67788888884 7777777888999999999999999886 322 1234666 6777666543
No 152
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.02 E-value=5.3 Score=38.00 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.2
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 5 KHHVACMPS-PGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 5 ~~~i~~~~~-p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
++||++|.. ++-|-.+=.-++|..|++. |.+|.+++++
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStD 39 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTD 39 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeC
Confidence 357877777 8889999999999999876 9888888764
No 153
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=81.61 E-value=45 Score=31.02 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=50.8
Q ss_pred CCeeeccCcc---hhhhhcCCcccccccc---cCchh-HHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCC
Q 012063 339 QGLVVPSWAP---QVEVLGHPSTGGFLTH---CGWNS-TLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYEN 411 (471)
Q Consensus 339 ~~v~v~~~~p---q~~~L~~~~~~~~ItH---gG~~s-~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 411 (471)
.++...++++ ...++..++ +++.- .|.|. +.||+++|+|+|.... ......+.. .+.|.....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~-~~~g~~~~~--- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVED-GETGLLVPP--- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcC-CCceEecCC---
Confidence 5677778888 344566666 55554 35544 5999999999976543 322233333 324663322
Q ss_pred CccCHHHHHHHHHHHhCC
Q 012063 412 GLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~ 429 (471)
...+++.+++..++++
T Consensus 327 --~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 327 --GDVEELADALEQLLED 342 (381)
T ss_pred --CCHHHHHHHHHHHhcC
Confidence 2589999999999987
No 154
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.26 E-value=6.5 Score=42.66 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=61.1
Q ss_pred hhhcCCccccccc---ccCch-hHHHHHhhCCc---eeecc-ccccchhhHHHHHhhhc-ceeecCCCCCCccCHHHHHH
Q 012063 351 EVLGHPSTGGFLT---HCGWN-STLESIVHGVP---LIAWP-LYAEQRLNAVILSEDLN-VALRPPEYENGLIKREEIAK 421 (471)
Q Consensus 351 ~~L~~~~~~~~It---HgG~~-s~~eal~~GvP---~l~~P-~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~l~~ 421 (471)
+++.-++ +|+. .-|+| +..|++++|+| ++++. +.+ .+. . +| -|+.+++. +.+++++
T Consensus 371 aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~---~-l~~~allVnP~-----D~~~lA~ 435 (797)
T PLN03063 371 ALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ---S-LGAGALLVNPW-----NITEVSS 435 (797)
T ss_pred HHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh---h-hcCCeEEECCC-----CHHHHHH
Confidence 5566677 5553 45877 66799999999 44444 332 111 2 33 47777764 5999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012063 422 VIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWK 468 (471)
Q Consensus 422 ~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (471)
+|.++|+.+. ++.+++.+++.+.+.+ -+...-.++|++.+.
T Consensus 436 AI~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 436 AIKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELN 476 (797)
T ss_pred HHHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHH
Confidence 9999998321 3445555556655553 355666666666554
No 155
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=81.22 E-value=1.3 Score=41.97 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=30.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 6 HHVACMPS-PGMGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 6 ~~i~~~~~-p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
||++++.. ++-|-.+-..++|..++++ |++|.++++...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCC
Confidence 34555544 8899999999999999876 999999987643
No 156
>PRK06321 replicative DNA helicase; Provisional
Probab=81.10 E-value=11 Score=38.20 Aligned_cols=37 Identities=14% Similarity=0.334 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
|++..-|+.|-..-.+.+|...+.+.|..|.|++.+-
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 4566779999999999999998755599999998653
No 157
>PRK05595 replicative DNA helicase; Provisional
Probab=80.33 E-value=6.4 Score=39.61 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++..-|+.|-..-.+.+|..++.++|+.|.|++.+-
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4566779999999999999987655699999998653
No 158
>PRK05748 replicative DNA helicase; Provisional
Probab=79.07 E-value=16 Score=36.90 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
+++...|+.|-..-.+.+|...+.++|..|.|++.+-.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 56677799999999999999987556999999986543
No 159
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.17 E-value=17 Score=30.61 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=35.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|.+..|+|++.-.|+-|-.+-.+.++..|..+ |++|-=+-++
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~ 42 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITP 42 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEee
Confidence 56678999999999999999999999999765 9988755443
No 160
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=78.12 E-value=15 Score=36.74 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
+++...|+.|=..-.+.+|..++.+.|+.|.|++.+-..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 466677999999999999999876559999999876433
No 161
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=78.08 E-value=7.4 Score=35.34 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 22 HVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
+.+|++.|. . +++|++++|..++.
T Consensus 16 i~aL~~al~-~-~~dV~VVAP~~~qS 39 (252)
T COG0496 16 IRALARALR-E-GADVTVVAPDREQS 39 (252)
T ss_pred HHHHHHHHh-h-CCCEEEEccCCCCc
Confidence 567888884 5 99999999876653
No 162
>PRK08760 replicative DNA helicase; Provisional
Probab=77.98 E-value=10 Score=38.40 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=30.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++..-|+.|-..-.+.+|...+.+.|+.|.|++.+-
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 4666779999999999999998755599999998653
No 163
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=76.03 E-value=8.9 Score=39.43 Aligned_cols=77 Identities=13% Similarity=0.010 Sum_probs=46.7
Q ss_pred hhhhhcCCccccccc---ccCch-hHHHHHhhCCceeeccccc-cchhhHHHHHhhh-cceeecCCCCCC--ccCHHHHH
Q 012063 349 QVEVLGHPSTGGFLT---HCGWN-STLESIVHGVPLIAWPLYA-EQRLNAVILSEDL-NVALRPPEYENG--LIKREEIA 420 (471)
Q Consensus 349 q~~~L~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~-DQ~~na~~~~~~~-G~g~~~~~~~~~--~~~~~~l~ 420 (471)
..+++..++ +||. +=|+| +++||+++|+|+|+....+ .... ..+...- ..|+.+...+.. .-+.++|+
T Consensus 468 y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 468 YEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred hHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 566677788 5554 44554 8999999999999976542 1221 1122101 257666532210 13467888
Q ss_pred HHHHHHhCC
Q 012063 421 KVIKGLMHG 429 (471)
Q Consensus 421 ~~i~~~l~~ 429 (471)
+++.+++..
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 889888854
No 164
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=75.42 E-value=23 Score=32.07 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=31.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
+++...|+.|=..-.+.++..++.++|+.|.|++.+...
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 456667899999999999999977569999999976543
No 165
>PRK05636 replicative DNA helicase; Provisional
Probab=74.20 E-value=10 Score=38.77 Aligned_cols=37 Identities=11% Similarity=0.354 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
|++..-|+.|-..-.+.+|...+.++|..|.|++.+-
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEM 304 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEM 304 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeC
Confidence 4667779999999999999988755689999987653
No 166
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=73.90 E-value=57 Score=30.58 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCch-----hhhhhhc--cCCCCeEEEEcCCCCCCcchh
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSK-----AITSVLQ--GLPEHINHVLLPPVNFEEDVK 77 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~lp~~~~~~~~~ 77 (471)
..+|.+.-.|+.|--+=.=.|.++|.++ ||+|.+++-....+.. .-+-... ....++=+.++|.....
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l---- 125 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL---- 125 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc----
Confidence 4578999999999999999999999765 9999999843222210 0111111 11123434444432211
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHH--HHHHHhCCceEE
Q 012063 78 AEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVF--DVAREFYVPSYL 131 (471)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~--~~A~~lgIP~v~ 131 (471)
..+ ..+......+++.. .+|+||.+....+-- .+++.-.+=.++
T Consensus 126 --GGl----S~at~~~i~~ldAa----G~DvIIVETVGvGQsev~I~~~aDt~~~v 171 (323)
T COG1703 126 --GGL----SRATREAIKLLDAA----GYDVIIVETVGVGQSEVDIANMADTFLVV 171 (323)
T ss_pred --hhh----hHHHHHHHHHHHhc----CCCEEEEEecCCCcchhHHhhhcceEEEE
Confidence 111 11222333444444 999999998654443 466555544333
No 167
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=73.88 E-value=85 Score=29.99 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=60.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCchhhhhhhccCCCCeE-EEEcCCCCCCcchhHHHHHHH
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPTIGPPSKAITSVLQGLPEHIN-HVLLPPVNFEEDVKAEIQIVL 84 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~~~~~~~~~~~ 84 (471)
+|+++-..+.|++.=..++.+.|.+.. +.+|++++.+.. ..+....| .++ ++.++.... . ..+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~------~~l~~~~p-~id~v~~~~~~~~--~----~~~~- 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWC------RPLLERMP-EIRQAIDMPLGHG--A----LELT- 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhh------HHHHhcCc-hhceeeecCCccc--c----hhhh-
Confidence 588999999999999999999996654 689999997633 33444334 232 222221110 0 0010
Q ss_pred HHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEE
Q 012063 85 AIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYL 131 (471)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 131 (471)
...+++.+ ++..++|++|.=........++...|+|.-+
T Consensus 67 -------~~~~~~~~-lr~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 -------ERRRLGRS-LREERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -------HHHHHHHH-HhhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 11122222 2445899999644444455567777888543
No 168
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=73.49 E-value=65 Score=32.78 Aligned_cols=110 Identities=17% Similarity=0.084 Sum_probs=73.0
Q ss_pred eeeccCcchhhhh---cCCccccccc--ccCchhHH-HHHhhCC----ceeeccccccchhhHHHHHhhhcceeecCCCC
Q 012063 341 LVVPSWAPQVEVL---GHPSTGGFLT--HCGWNSTL-ESIVHGV----PLIAWPLYAEQRLNAVILSEDLNVALRPPEYE 410 (471)
Q Consensus 341 v~v~~~~pq~~~L---~~~~~~~~It--HgG~~s~~-eal~~Gv----P~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 410 (471)
+.+.+.+|+.++. .-+++ ++|| .-|+|-|. |.++++. |+|+=-+.+ |+ +. +.-|+.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC--
Confidence 4556777876644 44664 4444 45899665 9999987 555443332 11 44 555777776
Q ss_pred CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012063 411 NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (471)
.+.++++++|.++|+... ++-+++.+++.+.+.+ -....=.+.|++++..+
T Consensus 433 ---~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 459999999999998533 4557777777777765 35566677888877654
No 169
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=73.24 E-value=25 Score=32.24 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++..-|+.|..+-..++|..++++ |++|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCC
Confidence 4455568999999999999999875 99999998754
No 170
>PRK08006 replicative DNA helicase; Provisional
Probab=72.83 E-value=19 Score=36.42 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|++-.-|+.|-..-.+.+|...+.+.|+.|.|++.+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE 262 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE 262 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 456667999999999999999875459999999865
No 171
>PRK07773 replicative DNA helicase; Validated
Probab=72.82 E-value=21 Score=39.41 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
|++..-|+.|-..-.+.+|...+.++|..|.|++.+-
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm 256 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM 256 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5666779999999999999999766688999998653
No 172
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=72.54 E-value=58 Score=28.26 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=59.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHH
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVL 84 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ 84 (471)
+--|.+++..+.|-.+..+.+|-+-+- +|.+|-++--=.......-.......+..+.|+.+++...-...+.....
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~G-hG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~d~-- 104 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALG-HGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREADI-- 104 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhc-CCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHHHH--
Confidence 345788899999999999999988866 48888887521111000001111222456888887643322222111111
Q ss_pred HHHHhHHHHHHHHHHhhcCCCccEEEeCCCCc
Q 012063 85 AIKRSLSSVRDVFKSLVASTHLMALVVDPFGT 116 (471)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~ 116 (471)
..+....+... +++.+.++|+||.|-+.+
T Consensus 105 --~aa~~~w~~a~-~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 105 --AAAKAGWEHAK-EALADGKYDLVILDELNY 133 (198)
T ss_pred --HHHHHHHHHHH-HHHhCCCCCEEEEehhhH
Confidence 22222332332 233556899999998654
No 173
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=71.69 E-value=61 Score=27.35 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=56.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEe---CCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHH
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLV---PTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQI 82 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~ 82 (471)
--|-+++.++.|-.+..+.+|-+.+.+ |++|.++- +.... .-.......+ ++.+............+.. ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~---gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~-~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKY---GELKALERLP-NIEIHRMGRGFFWTTENDE-ED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCcc---CHHHHHHhCC-CcEEEECCCCCccCCCChH-HH
Confidence 357788889999999999999999875 99999954 32111 1111223334 5777766443211111111 11
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCc
Q 012063 83 VLAIKRSLSSVRDVFKSLVASTHLMALVVDPFGT 116 (471)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~ 116 (471)
..... ..-+..++.+...++|+||.|-...
T Consensus 77 ~~~a~----~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 77 IAAAA----EGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHH----HHHHHHHHHHhcCCCCEEEEechHh
Confidence 11111 1122223334455899999998644
No 174
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=71.27 E-value=23 Score=35.28 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=30.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++...|+.|-..-.+.+|..++.+.|+.|.|++.+-
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm 233 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4666779999999999999998744599999998663
No 175
>PRK08506 replicative DNA helicase; Provisional
Probab=70.81 E-value=30 Score=35.12 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++..-|+.|-..-.+.+|...++. |+.|.|++.+-
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEM 230 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEM 230 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcC
Confidence 4666779999999999999999764 99999998663
No 176
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=69.85 E-value=75 Score=27.69 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=58.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC-CchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHH
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP-PSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIV 83 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 83 (471)
+-.|.++..++.|-.+..+.+|-+.+.. |++|.++--=... ..... ......+ ++.++............. ..-.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~-~~l~~l~-~v~~~~~g~~~~~~~~~~-~e~~ 97 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGER-NLLEFGG-GVEFHVMGTGFTWETQDR-ERDI 97 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHH-HHHhcCC-CcEEEECCCCCcccCCCc-HHHH
Confidence 4589999999999999999999999875 9999998631111 10011 1112223 577776644211111011 1111
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCc
Q 012063 84 LAIKRSLSSVRDVFKSLVASTHLMALVVDPFGT 116 (471)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~ 116 (471)
.... ..-+..++.+.+.++|+||.|-...
T Consensus 98 ~~~~----~~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 98 AAAR----EGWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred HHHH----HHHHHHHHHHhCCCCCEEEEehhhH
Confidence 1111 1122223334456899999998543
No 177
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=69.56 E-value=32 Score=31.85 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=33.2
Q ss_pred eeeccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeecc
Q 012063 341 LVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWP 384 (471)
Q Consensus 341 v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 384 (471)
+.+.+-.+-.+++.+++ .+||-.+ ..-.||+.+|+|++++.
T Consensus 185 ~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFG 225 (269)
T ss_pred EEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEec
Confidence 44455677789999999 8888664 57799999999999975
No 178
>PRK06904 replicative DNA helicase; Validated
Probab=68.27 E-value=38 Score=34.35 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=30.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|++-.-|+.|-..-++.+|...+.+.|+.|.|++.+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE 259 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE 259 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 456667999999999999998875459999999866
No 179
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=68.25 E-value=6.7 Score=38.30 Aligned_cols=113 Identities=13% Similarity=0.203 Sum_probs=64.9
Q ss_pred Ceee-ccCcchhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC--ccCH
Q 012063 340 GLVV-PSWAPQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG--LIKR 416 (471)
Q Consensus 340 ~v~v-~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~--~~~~ 416 (471)
+++. .+..+-.++|..++ ++||-- ...+.|.+..++|+|....-.|.+... .|.-......-.| .-+.
T Consensus 253 ~i~~~~~~~~~~~ll~~aD--iLITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~~ 323 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAAD--ILITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYNF 323 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESSH
T ss_pred cEEECCCCCCHHHHHHhcC--EEEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCCH
Confidence 5554 34456788999999 999987 468899999999999887666655322 1222222111001 2467
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 012063 417 EEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLV 464 (471)
Q Consensus 417 ~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (471)
++|.++|+.++++. ..++++-++..+.+-.. ..|.++++-++.++
T Consensus 324 ~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~~-~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 324 EELIEAIENIIENP--DEYKEKREKFRDKFFKY-NDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHTTHHHHH--HHTHHHHHHHHHHHSTT---S-HHHHHHHHHH
T ss_pred HHHHHHHHhhhhCC--HHHHHHHHHHHHHhCCC-CCchHHHHHHHHHh
Confidence 99999999988652 34556666666666542 33555555555543
No 180
>PRK08840 replicative DNA helicase; Provisional
Probab=67.24 E-value=36 Score=34.44 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=30.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
+++-.-|+.|-..-.+.+|...+.+.|+.|.|++.+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE 255 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE 255 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 455667999999999999999875559999999866
No 181
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.31 E-value=29 Score=30.59 Aligned_cols=101 Identities=6% Similarity=-0.081 Sum_probs=54.0
Q ss_pred CeeeccCcchhhhhcCCcccccccccCchhHHHHHh----hCCceeeccccccchhhHH-----HHHhhhcceeecCCCC
Q 012063 340 GLVVPSWAPQVEVLGHPSTGGFLTHCGWNSTLESIV----HGVPLIAWPLYAEQRLNAV-----ILSEDLNVALRPPEYE 410 (471)
Q Consensus 340 ~v~v~~~~pq~~~L~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~-----~~~~~~G~g~~~~~~~ 410 (471)
.+.......+..-+..++ ++|.--+.-.+-+.++ .+++.-+ .|.+..+. .+.+ -++-+.+....
T Consensus 55 ~i~~~~~~~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~-g~l~iaIsT~G 127 (202)
T PRK06718 55 KIRWKQKEFEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHR-GKLTISVSTDG 127 (202)
T ss_pred CEEEEecCCChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEc-CCeEEEEECCC
Confidence 344433344455567777 7777766655555444 4554433 34433322 2333 23333333222
Q ss_pred CCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 012063 411 NGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAA 448 (471)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~ 448 (471)
....-+..|++.|.+++. ++...+-+.+.++++.+++
T Consensus 128 ~sP~la~~lr~~ie~~~~-~~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 128 ASPKLAKKIRDELEALYD-ESYESYIDFLYECRQKIKE 164 (202)
T ss_pred CChHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHH
Confidence 112345678888887773 3445677777777777765
No 182
>PRK09165 replicative DNA helicase; Provisional
Probab=66.01 E-value=30 Score=35.34 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=30.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--------------CCcEEEEEeCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLR--------------HDISVTFLVPTIGP 46 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r--------------~Gh~Vt~~~~~~~~ 46 (471)
+++..-|+.|-..-++.+|...+.+ .|..|.|++.+-..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 4666779999999999999998753 27889999865433
No 183
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=65.63 E-value=13 Score=30.41 Aligned_cols=39 Identities=18% Similarity=-0.001 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
++++|++.+.++-+|-.-..-++..|.. .|++|+++...
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~ 40 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVM 40 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCC
Confidence 4568999999999999999999999965 59999998754
No 184
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=65.07 E-value=9.5 Score=34.66 Aligned_cols=99 Identities=7% Similarity=0.022 Sum_probs=52.9
Q ss_pred CccEEEEEeCCC---cCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCee
Q 012063 266 SGSVLFVSFGSG---GTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLV 342 (471)
Q Consensus 266 ~~~~i~vs~GS~---~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~ 342 (471)
+++.|.+..|+. -.++.+.+.++++.|.+.+.+++...+.... ....-..+.+......+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~----------------~~~~~~~~~~~~~~~~~~ 167 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ----------------EKEIADQIAAGLQNPVIN 167 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH----------------HHHHHHHHHTTHTTTTEE
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH----------------HHHHHHHHHHhcccceEe
Confidence 356788888875 4567888999999998777555433332210 000000011111111222
Q ss_pred eccC--cc-hhhhhcCCcccccccccCchhHHHHHhhCCceeec
Q 012063 343 VPSW--AP-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW 383 (471)
Q Consensus 343 v~~~--~p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 383 (471)
+.+- +. ..+++.+++ ++|+.- -|.++=|.+.|+|+|++
T Consensus 168 ~~~~~~l~e~~ali~~a~--~~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 168 LAGKTSLRELAALISRAD--LVIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp ETTTS-HHHHHHHHHTSS--EEEEES-SHHHHHHHHTT--EEEE
T ss_pred ecCCCCHHHHHHHHhcCC--EEEecC-ChHHHHHHHHhCCEEEE
Confidence 3221 22 368888999 999965 58899999999999998
No 185
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=64.53 E-value=32 Score=31.49 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 22 HVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
+.+|+++| ++ +|+|++++|...+.
T Consensus 16 i~aL~~~l-~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 16 IIILAEYL-SE-KHEVFVVAPDKERS 39 (253)
T ss_pred HHHHHHHH-Hh-CCcEEEEccCCCCc
Confidence 66788888 45 78999999876553
No 186
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=64.08 E-value=13 Score=35.36 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=33.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPT 43 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~ 43 (471)
|||+++-....|++.=..++.+.|.++. +.+|++++.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 5899999999999999999999996654 6899999976
No 187
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=63.94 E-value=24 Score=38.09 Aligned_cols=111 Identities=19% Similarity=0.091 Sum_probs=64.5
Q ss_pred eeccCcchhh---hhcCCcccccccc---cCch-hHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCcc
Q 012063 342 VVPSWAPQVE---VLGHPSTGGFLTH---CGWN-STLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLI 414 (471)
Q Consensus 342 ~v~~~~pq~~---~L~~~~~~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 414 (471)
++.+++++.+ +++.++ +|+.- -|+| ...|++++|+|-..+|...+--. -..+ +.-|+.+++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G---~~~~-l~~~llv~P~----- 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAG---AAAE-LAEALLVNPN----- 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecccc---hhHH-hCcCeEECCC-----
Confidence 3456777765 455566 55542 3555 77899999775222222221110 1112 3336777764
Q ss_pred CHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 415 KREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
+.++++++|.++|+... ++.+++.+++++.+.+ -+...-++++++.+.+
T Consensus 414 d~~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 414 DIEGIAAAIKRALEMPE-EEQRERMQAMQERLRR-----YDVHKWASDFLDELRE 462 (726)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 59999999999998532 3445555555555543 4667777777776654
No 188
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=62.44 E-value=65 Score=27.26 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=22.3
Q ss_pred cccccccCch------hHHHHHhhCCceeeccc
Q 012063 359 GGFLTHCGWN------STLESIVHGVPLIAWPL 385 (471)
Q Consensus 359 ~~~ItHgG~~------s~~eal~~GvP~l~~P~ 385 (471)
+++++|+|-| .+.+|...++|||++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3788887744 78999999999999963
No 189
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=62.35 E-value=38 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 22 HVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
+.+|+++|.+ .| +|++++|...+.
T Consensus 16 i~aL~~~l~~-~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 16 IRALYQALKE-LG-EVTVVAPARQRS 39 (244)
T ss_pred HHHHHHHHHh-CC-CEEEEeCCCCcc
Confidence 5678888965 48 899998875553
No 190
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=62.17 E-value=41 Score=30.78 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 22 HVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
+..|+++| +. +|+|++++|...+.
T Consensus 16 l~aL~~~l-~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELL-SK-YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHH-Hh-CCcEEEEccCCCCc
Confidence 77888999 44 78999998876553
No 191
>PRK07004 replicative DNA helicase; Provisional
Probab=61.64 E-value=46 Score=33.62 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++..-|+.|-..-++.+|..++.+.|..|.|++.+-
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM 252 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEM 252 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4666779999999999999988755599999998653
No 192
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=60.63 E-value=13 Score=29.49 Aligned_cols=35 Identities=26% Similarity=0.121 Sum_probs=30.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
+|++.+.|+-.|.....-++..|.. +|++|.+...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCC
Confidence 5789999999999999999999955 5999988763
No 193
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=59.91 E-value=17 Score=28.90 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=22.6
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 6 HHVACMPSPGMG---HLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 6 ~~i~~~~~p~~G---H~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|+|+|+--|-.+ .-.-.++|+.+-++| ||+|.++.+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcC
Confidence 466666665444 234567888888776 9999999754
No 194
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=59.40 E-value=27 Score=29.41 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=27.8
Q ss_pred cchhhhhcCCcccccccccCchhHHH---HHhhCCceeeccc
Q 012063 347 APQVEVLGHPSTGGFLTHCGWNSTLE---SIVHGVPLIAWPL 385 (471)
Q Consensus 347 ~pq~~~L~~~~~~~~ItHgG~~s~~e---al~~GvP~l~~P~ 385 (471)
.+...++...+..+++--||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 44555555544456777799998765 5789999999874
No 195
>PRK05973 replicative DNA helicase; Provisional
Probab=58.74 E-value=24 Score=32.03 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=32.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
-+++..-|+.|-..-.+.++...+++ |..|.|++.+...
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~ 104 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTE 104 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCH
Confidence 35667779999999999999999776 9999999876443
No 196
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.45 E-value=14 Score=35.16 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|++.+|+|+++-.++.|= .+|..|++. ||+|++++..
T Consensus 1 ~~~~~m~I~IiG~GaiG~-----~lA~~L~~~-g~~V~~~~r~ 37 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGG-----FYGAMLARA-GFDVHFLLRS 37 (313)
T ss_pred CCCcCcEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeC
Confidence 788889999998888884 567889765 9999999854
No 197
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=58.03 E-value=56 Score=29.17 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=31.4
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 7 HVACMPS--PGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 7 ~i~~~~~--p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
+|.++++ ++-|-.+-.-+|+-.|+++ |+.|.++-.....
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~DiGL 43 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFDIGL 43 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecCcCc
Confidence 4555665 6889999999999999886 9999999765443
No 198
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=58.02 E-value=72 Score=28.49 Aligned_cols=30 Identities=23% Similarity=0.146 Sum_probs=23.9
Q ss_pred CCCccEEEeCCCCccHH---HHHHHhCCceEEE
Q 012063 103 STHLMALVVDPFGTDVF---DVAREFYVPSYLY 132 (471)
Q Consensus 103 ~~~~D~VI~D~~~~~~~---~~A~~lgIP~v~~ 132 (471)
+.+.|+|+.|.+.+... .+++.+|+|++.-
T Consensus 176 ~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 176 EQGADLIVLDCMGYTQEMRDIVQRALGKPVLLS 208 (221)
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeH
Confidence 44899999999877665 4888899996653
No 199
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=57.86 E-value=21 Score=30.00 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=26.9
Q ss_pred EEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEE
Q 012063 269 VLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVV 303 (471)
Q Consensus 269 ~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~ 303 (471)
.+|+|+||........++..+++|.+.+..-++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999877666778889999988875334443
No 200
>PHA02542 41 41 helicase; Provisional
Probab=57.83 E-value=27 Score=35.37 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++..-|+.|-..-.+.+|...++. |+.|.|++-+-
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM 228 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEM 228 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccC
Confidence 4566779999999999999999765 99999998553
No 201
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=57.32 E-value=1.2e+02 Score=28.04 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=16.5
Q ss_pred HHHHHHHHHhC--CCcEEEEEeCCCCCC
Q 012063 22 HVELAKQLVLR--HDISVTFLVPTIGPP 47 (471)
Q Consensus 22 ~l~La~~L~~r--~Gh~Vt~~~~~~~~~ 47 (471)
+.+|+++|.+. .|++|++++|...+.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 44566666431 147999999876553
No 202
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=57.12 E-value=1.4e+02 Score=28.63 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=62.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCchhhhhhhccCCCCeEE-EEcCCCCCCcchhHHHHHH
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPTIGPPSKAITSVLQGLPEHINH-VLLPPVNFEEDVKAEIQIV 83 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~~~~~~~~~ 83 (471)
|+|+++-..+.|++.=..++.+.|.++. +.+|++++.+ ....+....| .++. +.++... . ...+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~------~~~~l~~~~P-~vd~vi~~~~~~---~---~~~~- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPA------WCRPLLSRMP-EVNEAIPMPLGH---G---ALEI- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEech------hhHHHHhcCC-ccCEEEeccccc---c---hhhh-
Confidence 5799999999999999999999997654 6899999976 3334444444 2433 2222110 0 0001
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEE
Q 012063 84 LAIKRSLSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYL 131 (471)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 131 (471)
....+++++ ++..++|++|.=....-...++...|+|.-+
T Consensus 67 -------~~~~~l~~~-lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -------GERRRLGHS-LREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -------HHHHHHHHH-HHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 011122222 2445899998433334445677777888554
No 203
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=56.51 E-value=95 Score=28.52 Aligned_cols=40 Identities=20% Similarity=0.062 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCccCHH-HHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 4 VKHHVACMPSPGMGHLI-PHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~-P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
.||||++.-- -|--. -+.+|+++|.+. | +|++++|...+.
T Consensus 4 ~~M~ILltND--DGi~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCND--DGIEGEGIHVLAASMKKI-G-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECC--CCCCCHHHHHHHHHHHhC-C-CEEEEcCCCCCC
Confidence 4688888764 23222 366788888553 7 799998865553
No 204
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.76 E-value=19 Score=33.27 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCcccccccccCchhHHHHHh------hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhC
Q 012063 355 HPSTGGFLTHCGWNSTLESIV------HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 355 ~~~~~~~ItHgG~~s~~eal~------~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 428 (471)
.++ ++|+-||-||++.|+. .++|++.+-.. .+|..- + ++.+++.+++.++++
T Consensus 35 ~~D--lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~---~---~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPD--IVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT---D---WRPFEVDKLVIALAK 92 (265)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc---c---CCHHHHHHHHHHHHc
Confidence 345 9999999999999986 47888887321 122221 1 567888888888887
Q ss_pred C
Q 012063 429 G 429 (471)
Q Consensus 429 ~ 429 (471)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 5
No 205
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=54.59 E-value=51 Score=30.37 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=31.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
-+++...|+.|-..-.++++..++..+|+.|.|++.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 45667778999999999999999765599999999754
No 206
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=53.96 E-value=1.7e+02 Score=26.58 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=58.8
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEeC-CCCC-------Cc---hhh----------hhhhccCCCCeEE
Q 012063 7 HVACMPS-PGMGHLIPHVELAKQLVLRHDISVTFLVP-TIGP-------PS---KAI----------TSVLQGLPEHINH 64 (471)
Q Consensus 7 ~i~~~~~-p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~-~~~~-------~~---~~~----------~~~~~~~~~~~~~ 64 (471)
.|++.+. ++-|-.+=.-+||..|++. |++|..+-- |.|. +. ... ........+++.|
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~-G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARL-GESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHC-CCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 5555555 8999999999999999764 999999853 2221 10 011 0111123346677
Q ss_pred EEcCCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEEeCCCC
Q 012063 65 VLLPPVNFEEDVKAEIQIVLAIKRSLSSVRDVFKSLVASTHLMALVVDPFG 115 (471)
Q Consensus 65 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~ 115 (471)
.++...... -...+.. .......+.+.+.++....+.|+||.|.-.
T Consensus 82 LPfG~l~~~----~~~~~~~-l~~~~~~l~~~l~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 82 LPFGQLTEA----EREAFEQ-LAQDPQWLARALAALKALGPYDWILIDTPP 127 (243)
T ss_pred EcCCCCCHH----HHHHHHH-hhcCHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 666443321 1112222 333344555666665434578999999744
No 207
>PRK06749 replicative DNA helicase; Provisional
Probab=53.90 E-value=1e+02 Score=30.77 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
|++-.-|+.|-..-++.+|...+.. |..|.|++.+-
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEM 224 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEM 224 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeC
Confidence 4566779999999999999999865 99999998653
No 208
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.80 E-value=1e+02 Score=27.21 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=50.6
Q ss_pred hhhhcCCcccccccccCchhHH-----HHHhhCCceeec--cccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHH
Q 012063 350 VEVLGHPSTGGFLTHCGWNSTL-----ESIVHGVPLIAW--PLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKV 422 (471)
Q Consensus 350 ~~~L~~~~~~~~ItHgG~~s~~-----eal~~GvP~l~~--P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~ 422 (471)
...|..+. ++|..-|...+. +|-..|+|+-++ |-..| +..-..+.+ -++=+.+........-+..|++.
T Consensus 64 ~~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~-g~l~iaisT~G~sP~la~~lr~~ 139 (205)
T TIGR01470 64 ADILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDR-SPVVVAISSGGAAPVLARLLRER 139 (205)
T ss_pred HHHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEc-CCEEEEEECCCCCcHHHHHHHHH
Confidence 44466777 888888876433 334567777433 22222 112222333 23333333221112445778888
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHHHH
Q 012063 423 IKGLMHGEDGVIIRDRMNRLKDAAAAA 449 (471)
Q Consensus 423 i~~~l~~~~~~~~r~~a~~l~~~~~~~ 449 (471)
|.+.+.. +...+.+.+.++++.+.+.
T Consensus 140 ie~~l~~-~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 140 IETLLPP-SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHhcch-hHHHHHHHHHHHHHHHHhh
Confidence 8888853 2345667777777777653
No 209
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=52.92 E-value=32 Score=32.87 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=24.0
Q ss_pred hhcCCCccEEEeCCCCccH----------HHHHHHhCCceEEEec
Q 012063 100 LVASTHLMALVVDPFGTDV----------FDVAREFYVPSYLYFL 134 (471)
Q Consensus 100 ~~~~~~~D~VI~D~~~~~~----------~~~A~~lgIP~v~~~~ 134 (471)
++++.+||++|+.+.+..+ ..+.++++||.++-+.
T Consensus 75 mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 75 MVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 3344599999998855432 1256689999887543
No 210
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=52.16 E-value=12 Score=37.54 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=44.5
Q ss_pred cccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHH
Q 012063 363 THCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNR 441 (471)
Q Consensus 363 tHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~ 441 (471)
-|-| -++.||+++|+|+++.= +..-+.-+++ .--|.-.++.+ -....+++++.++.+| ++++.++.+
T Consensus 376 E~FG-iv~IEAMa~glPvvAt~----~GGP~EiV~~-~~tG~l~dp~~---e~~~~~a~~~~kl~~~---p~l~~~~~~ 442 (495)
T KOG0853|consen 376 EHFG-IVPIEAMACGLPVVATN----NGGPAEIVVH-GVTGLLIDPGQ---EAVAELADALLKLRRD---PELWARMGK 442 (495)
T ss_pred CCcc-ceeHHHHhcCCCEEEec----CCCceEEEEc-CCcceeeCCch---HHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 5666 48899999999999873 2223334444 44566666532 3345799999999999 666555443
No 211
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=52.06 E-value=1.4e+02 Score=24.89 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=71.1
Q ss_pred EEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcc
Q 012063 269 VLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAP 348 (471)
Q Consensus 269 ~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~p 348 (471)
.|-|-.||.. +....+++...|+..+..+-..+-+... .|+.+. .|+.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR-------------------~p~~l~-----------~~~~ 49 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR-------------------TPERLL-----------EFVK 49 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT-------------------SHHHHH-----------HHHH
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC-------------------CHHHHH-----------HHHH
Confidence 4555567744 4566788899998888655444433322 334322 2222
Q ss_pred hhhhhcCCcccccccccCch----hHHHHHhhCCceeeccccccchhh----HHHHHhhhcceeecCCCCCCccCHHHHH
Q 012063 349 QVEVLGHPSTGGFLTHCGWN----STLESIVHGVPLIAWPLYAEQRLN----AVILSEDLNVALRPPEYENGLIKREEIA 420 (471)
Q Consensus 349 q~~~L~~~~~~~~ItHgG~~----s~~eal~~GvP~l~~P~~~DQ~~n----a~~~~~~~G~g~~~~~~~~~~~~~~~l~ 420 (471)
..+- ..++ +||.=.|.. ++..++. -+|+|.+|....+... ...++-..|+++..-.- ++..++.-+.
T Consensus 50 ~~~~-~~~~--viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A 124 (150)
T PF00731_consen 50 EYEA-RGAD--VIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLA 124 (150)
T ss_dssp HTTT-TTES--EEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHH
T ss_pred Hhcc-CCCE--EEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHH
Confidence 2110 1233 777766644 4444444 7999999998775432 22333323555433211 0124555555
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 012063 421 KVIKGLMHGEDGVIIRDRMNRLKDAAAA 448 (471)
Q Consensus 421 ~~i~~~l~~~~~~~~r~~a~~l~~~~~~ 448 (471)
..|-.+ .+ ++++++.+..++..++
T Consensus 125 ~~ILa~-~d---~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 125 ARILAL-KD---PELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHT-T----HHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CC---HHHHHHHHHHHHHHHc
Confidence 555433 45 7888888888887765
No 212
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.01 E-value=26 Score=32.83 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=37.9
Q ss_pred cCCcccccccccCchhHHHHHh----hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 354 GHPSTGGFLTHCGWNSTLESIV----HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 354 ~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
..++ ++|+-||-||++.++. .++|++.+-.. .+|..- + ++.+++.+++++++++
T Consensus 63 ~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt---~---~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 63 KISD--FLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLT---D---ITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCC---c---CCHHHHHHHHHHHHcC
Confidence 3466 9999999999998866 36787776311 122221 1 6688899999998875
No 213
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=51.77 E-value=27 Score=32.83 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=38.1
Q ss_pred cCCcccccccccCchhHHHHHhh----CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 354 GHPSTGGFLTHCGWNSTLESIVH----GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 354 ~~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
..++ ++|+-||-||+++++.. ++|++.+-.. .+|... + .+.+++.++|.+++++
T Consensus 62 ~~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~---~---~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT---D---IPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc---c---CCHHHHHHHHHHHHcC
Confidence 3456 99999999999999774 6677776311 122222 1 6678899999988875
No 214
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=51.48 E-value=1.1e+02 Score=27.96 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 22 HVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
+.+|+++|.+ . |+|++++|...+.
T Consensus 16 i~aL~~~l~~-~-~~V~VvAP~~~qS 39 (250)
T PRK00346 16 IRALAEALRE-L-ADVTVVAPDRERS 39 (250)
T ss_pred HHHHHHHHHh-C-CCEEEEeCCCCCc
Confidence 6788899965 3 7999999875553
No 215
>PRK12342 hypothetical protein; Provisional
Probab=50.14 E-value=26 Score=32.10 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=23.0
Q ss_pred CccEEEeCCCCcc------HHHHHHHhCCceEEEecc
Q 012063 105 HLMALVVDPFGTD------VFDVAREFYVPSYLYFLT 135 (471)
Q Consensus 105 ~~D~VI~D~~~~~------~~~~A~~lgIP~v~~~~~ 135 (471)
.||+|++...+.. +..+|+.||+|++++...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 6999997443322 457999999999887654
No 216
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.07 E-value=60 Score=27.25 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=54.1
Q ss_pred chhHHHHHhhCCceeecc-ccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 012063 367 WNSTLESIVHGVPLIAWP-LYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDA 445 (471)
Q Consensus 367 ~~s~~eal~~GvP~l~~P-~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~ 445 (471)
.-|+.|--.+|.=.+-== +..=+..|++..++ .|.=..+-.+. .+.++|.++..+-|.|++..+++....++.+.
T Consensus 87 a~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aVkg---~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rI 162 (176)
T COG3195 87 AESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAVKG---NTKDTILAAFERRLDNDREQEFATALAEIERI 162 (176)
T ss_pred hhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEeecC---CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 346666666665443210 11125679999999 99887765554 78999999999999988777888888777665
Q ss_pred HH
Q 012063 446 AA 447 (471)
Q Consensus 446 ~~ 447 (471)
..
T Consensus 163 A~ 164 (176)
T COG3195 163 AL 164 (176)
T ss_pred HH
Confidence 43
No 217
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=49.92 E-value=33 Score=26.94 Aligned_cols=36 Identities=25% Similarity=0.131 Sum_probs=31.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
.++++...+..-|-.-+..|+..|.+ +||+|.++-.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECC
Confidence 37899999999999999999999966 4999999853
No 218
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=49.86 E-value=1.9e+02 Score=26.78 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 20 IPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 20 ~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
--+.+|+++|... | +|++++|...+.
T Consensus 14 pGi~aL~~al~~~-g-~V~VvAP~~eqS 39 (266)
T PRK13934 14 PGLRLLYEFVSPL-G-EVDVVAPETPKS 39 (266)
T ss_pred HHHHHHHHHHHhC-C-cEEEEccCCCCc
Confidence 3467889999654 7 799998875553
No 219
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=49.56 E-value=32 Score=31.64 Aligned_cols=31 Identities=6% Similarity=-0.085 Sum_probs=23.1
Q ss_pred CccEEEeCCCC------ccHHHHHHHhCCceEEEecc
Q 012063 105 HLMALVVDPFG------TDVFDVAREFYVPSYLYFLT 135 (471)
Q Consensus 105 ~~D~VI~D~~~------~~~~~~A~~lgIP~v~~~~~ 135 (471)
.||+|++...+ .-+..+|+.||+|++++...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 69999974333 23457999999999887654
No 220
>PRK11519 tyrosine kinase; Provisional
Probab=49.34 E-value=3.7e+02 Score=29.04 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=30.7
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 5 KHHVACMPS--PGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 5 ~~~i~~~~~--p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
+.++++++. |+.|-..-...||..|+.. |++|.++-..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCC
Confidence 445655554 7889999999999999875 9999999654
No 221
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=49.31 E-value=1.8e+02 Score=32.40 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=58.1
Q ss_pred cchh---hhhcCCccccccc--ccCchhHH-HHHhhCC---ceeeccccccchhhHHHHHhhhc-ceeecCCCCCCccCH
Q 012063 347 APQV---EVLGHPSTGGFLT--HCGWNSTL-ESIVHGV---PLIAWPLYAEQRLNAVILSEDLN-VALRPPEYENGLIKR 416 (471)
Q Consensus 347 ~pq~---~~L~~~~~~~~It--HgG~~s~~-eal~~Gv---P~l~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~~~ 416 (471)
+|+. +++.-+++ ++|| .-|+|-+. |+++++. -+++++-++ --... +| -|+.+++ .+.
T Consensus 448 l~~eeL~AlY~~ADV-~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa------Gaa~~-L~~~AllVNP-----~D~ 514 (934)
T PLN03064 448 LDFHALCALYAVTDV-ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA------GAAQS-LGAGAILVNP-----WNI 514 (934)
T ss_pred CCHHHHHHHHHhCCE-EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC------chHHH-hCCceEEECC-----CCH
Confidence 5554 44455663 3333 45888554 9999955 122223221 11223 44 4677776 469
Q ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012063 417 EEIAKVIKGLMH-GEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKN 469 (471)
Q Consensus 417 ~~l~~~i~~~l~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (471)
++++++|.++|+ ++ ++-+++.+++.+.+.. -+...=++.|++++.+
T Consensus 515 ~~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 515 TEVAASIAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELND 561 (934)
T ss_pred HHHHHHHHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHH
Confidence 999999999997 31 3444455555554442 3555556666666543
No 222
>PLN02929 NADH kinase
Probab=48.62 E-value=18 Score=34.05 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=41.6
Q ss_pred CCcccccccccCchhHHHHHh---hCCceeecccccc------chhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHH
Q 012063 355 HPSTGGFLTHCGWNSTLESIV---HGVPLIAWPLYAE------QRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKG 425 (471)
Q Consensus 355 ~~~~~~~ItHgG~~s~~eal~---~GvP~l~~P~~~D------Q~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~ 425 (471)
.++ ++|+-||-||++.|.. .++|++.+=.... ++.|.-. +. .-+|.--. ++.+++.++|.+
T Consensus 64 ~~D--lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~~ 133 (301)
T PLN02929 64 DVD--LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLDD 133 (301)
T ss_pred CCC--EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHHH
Confidence 445 9999999999999855 4688888754321 1111100 11 12333322 568999999999
Q ss_pred HhCC
Q 012063 426 LMHG 429 (471)
Q Consensus 426 ~l~~ 429 (471)
++++
T Consensus 134 il~g 137 (301)
T PLN02929 134 VLFG 137 (301)
T ss_pred HHcC
Confidence 9986
No 223
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=48.34 E-value=33 Score=29.78 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=23.8
Q ss_pred EEEEEcCCCccCHHH------------HHHHHHHHHhCCCcEEEEEeCCC
Q 012063 7 HVACMPSPGMGHLIP------------HVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P------------~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+|++...|+.=++.| -..||+++..+ |++||+++++.
T Consensus 5 ~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 5 KVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TT
T ss_pred EEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCc
Confidence 555555555444444 36899999775 99999999773
No 224
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=47.95 E-value=57 Score=27.66 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhCCC--cEEEEE
Q 012063 18 HLIPHVELAKQLVLRHD--ISVTFL 40 (471)
Q Consensus 18 H~~P~l~La~~L~~r~G--h~Vt~~ 40 (471)
|.....+|+++|.+++| .+|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 78888999999965345 455544
No 225
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=47.91 E-value=50 Score=31.85 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=59.1
Q ss_pred CccEEEEEeCCC----cCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCC--
Q 012063 266 SGSVLFVSFGSG----GTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQ-- 339 (471)
Q Consensus 266 ~~~~i~vs~GS~----~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-- 339 (471)
+++.|.|.-|+. -.++.+.+.++++.|...+.++++ +++..+ ...-+.+.+....+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl-~Gg~~e-----------------~~~~~~i~~~~~~~~~ 240 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVL-FGSAKD-----------------HEAGNEILAALNTEQQ 240 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEE-EeCHHh-----------------HHHHHHHHHhcccccc
Confidence 456888888773 456788899999988765666554 343321 00111111111111
Q ss_pred -C-eeeccC--cc-hhhhhcCCcccccccccCchhHHHHHhhCCceeec
Q 012063 340 -G-LVVPSW--AP-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW 383 (471)
Q Consensus 340 -~-v~v~~~--~p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 383 (471)
+ +.+.+- +. -.+++.+++ +||+.- -|-++=|.+.|+|+|++
T Consensus 241 ~~~~~l~g~~sL~el~ali~~a~--l~I~nD-TGp~HlAaA~g~P~val 286 (348)
T PRK10916 241 AWCRNLAGETQLEQAVILIAACK--AIVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_pred cceeeccCCCCHHHHHHHHHhCC--EEEecC-ChHHHHHHHhCCCEEEE
Confidence 1 112221 23 367888999 999954 58899999999999875
No 226
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.74 E-value=35 Score=32.03 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=40.2
Q ss_pred hhhcCCcccccccccCchhHHHHHhh----CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHH
Q 012063 351 EVLGHPSTGGFLTHCGWNSTLESIVH----GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGL 426 (471)
Q Consensus 351 ~~L~~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~ 426 (471)
.+...++ ++|+=||-||++.++.. ++|++.+-.. .+|..-. ++.+++.++++++
T Consensus 60 ~~~~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt~------~~~~~~~~~l~~i 117 (292)
T PRK01911 60 ELDGSAD--MVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLAT------VSKEEIEETIDEL 117 (292)
T ss_pred hcccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCcccc------cCHHHHHHHHHHH
Confidence 3333456 99999999999999873 6788877321 1222211 6688999999999
Q ss_pred hCC
Q 012063 427 MHG 429 (471)
Q Consensus 427 l~~ 429 (471)
+++
T Consensus 118 ~~g 120 (292)
T PRK01911 118 LNG 120 (292)
T ss_pred HcC
Confidence 976
No 227
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=46.64 E-value=1.5e+02 Score=25.63 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=44.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHH
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLA 85 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 85 (471)
.++-+-..+.|-++-...|+++|.+++ |++|.+-++... .........++.+....+|-+. .
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~t----g~~~~~~~~~~~v~~~~~P~D~-------~------ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPT----GREMARKLLPDRVDVQYLPLDF-------P------ 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CC----HHHHHHGG-GGG-SEEE---SS-------H------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCc----hHHHHHHhCCCCeEEEEeCccC-------H------
Confidence 445555678899999999999996543 677777664211 1111111112223333333221 1
Q ss_pred HHHhHHHHHHHHHHhhcCCCccEEE-eCCCCccHH-HHHHHhCCceEEEec
Q 012063 86 IKRSLSSVRDVFKSLVASTHLMALV-VDPFGTDVF-DVAREFYVPSYLYFL 134 (471)
Q Consensus 86 ~~~~~~~l~~~l~~~~~~~~~D~VI-~D~~~~~~~-~~A~~lgIP~v~~~~ 134 (471)
......++.+ +||++| .+.=.+... ..|++.|||.+..+.
T Consensus 85 -----~~~~rfl~~~----~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 -----WAVRRFLDHW----RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----HHHHHHHHHH------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----HHHHHHHHHh----CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1122334455 899877 555444444 488889999887664
No 228
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.27 E-value=1.2e+02 Score=28.64 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=38.6
Q ss_pred CCcccccccccCchhHHHHHhh----CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 355 HPSTGGFLTHCGWNSTLESIVH----GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 355 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
.++ ++|+=||-||+++++.. ++|++.+... + +|.. .+ .+.+++.++|.+++++
T Consensus 62 ~~d--~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~---lGFl---~~---~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCD--LVIVVGGDGSLLGAARALARHNVPVLGINRG-----------R---LGFL---TD---IRPDELEFKLAEVLDG 118 (295)
T ss_pred CCC--EEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c---cccc---cc---CCHHHHHHHHHHHHcC
Confidence 455 99999999999999753 6688877531 1 2222 11 6789999999999976
No 229
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=46.13 E-value=80 Score=30.26 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
|.=++.++.|-+==.+.|++.|.++ |++|.+++-.+..
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~-G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQAR-GYRPAILSRGYGR 77 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhc-CCceEEEcCCCCC
Confidence 4456778999999999999999765 9999999865443
No 230
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=45.95 E-value=32 Score=27.71 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
+||++.-.++.+=+. ...+.++|.++ |++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECC
Confidence 477777777766666 99999999765 9999999876
No 231
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.77 E-value=1.2e+02 Score=25.12 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.1
Q ss_pred ccccccCc------hhHHHHHhhCCceeeccc
Q 012063 360 GFLTHCGW------NSTLESIVHGVPLIAWPL 385 (471)
Q Consensus 360 ~~ItHgG~------~s~~eal~~GvP~l~~P~ 385 (471)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 78888663 478899999999999864
No 232
>PRK14098 glycogen synthase; Provisional
Probab=45.73 E-value=34 Score=34.90 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEcC---C---CccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 1 MAQVKHHVACMPS---P---GMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 1 m~~~~~~i~~~~~---p---~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
|.++.|+|++++. | +-|=-.-+-+|.++|+++ ||+|.++.|..
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~-g~~v~v~~P~y 49 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEE-GFEARIMMPKY 49 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 5667799999875 1 223334466888999765 99999999854
No 233
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=45.63 E-value=1.4e+02 Score=25.63 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=22.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcE--EEEEeCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDIS--VTFLVPT 43 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~--Vt~~~~~ 43 (471)
|||+|+.++.. ..+..+..+|.++ +|+ +..+.+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEES
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEecc
Confidence 68888865444 5677778888665 887 5555543
No 234
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=45.15 E-value=99 Score=21.19 Aligned_cols=52 Identities=17% Similarity=0.357 Sum_probs=42.8
Q ss_pred cCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012063 414 IKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (471)
-+-.+|...|..+|. ....+-..+.+.+-.-++.-++.-..+|+=+++++++
T Consensus 12 kNmq~LTs~vQ~lLQ-----q~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm~q 63 (73)
T KOG4117|consen 12 KNMQDLTSVVQGLLQ-----QTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQ 63 (73)
T ss_pred ccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 467899999999994 5777888888887777777888888999999998875
No 235
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=45.01 E-value=45 Score=24.22 Aligned_cols=35 Identities=17% Similarity=-0.056 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEe
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLV 41 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~ 41 (471)
.-++++..+...|..-+-.+|+.|+++ |..|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 467788889999999999999999875 99887653
No 236
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.79 E-value=38 Score=31.81 Aligned_cols=55 Identities=7% Similarity=0.083 Sum_probs=38.6
Q ss_pred hcCCcccccccccCchhHHHHHh----hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhC
Q 012063 353 LGHPSTGGFLTHCGWNSTLESIV----HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 353 L~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~ 428 (471)
...++ ++|+=||-||++.++. +++|++.+-... +|..- + ++.+++.++++++++
T Consensus 61 ~~~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~--------------lGFl~---~---~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 61 GQQAD--LAIVVGGDGNMLGAARVLARYDIKVIGINRGN--------------LGFLT---D---LDPDNALQQLSDVLE 118 (292)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEECCC--------------CCccc---c---cCHHHHHHHHHHHHc
Confidence 33456 9999999999999975 367777763210 12211 1 568899999999987
Q ss_pred C
Q 012063 429 G 429 (471)
Q Consensus 429 ~ 429 (471)
+
T Consensus 119 g 119 (292)
T PRK03378 119 G 119 (292)
T ss_pred C
Confidence 6
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=44.59 E-value=1.6e+02 Score=25.77 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC--chhhhhhhccCCCCeEEEEc
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP--SKAITSVLQGLPEHINHVLL 67 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 67 (471)
-|+|+-..+-|-.+=...||..+..+ |.+|.+++...+.. ..+.+.+.... ++++...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l--~vp~~~~ 62 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEIL--GVPFYVA 62 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHH--TEEEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHh--ccccchh
Confidence 45777778999999999999999887 99999999875543 22333333322 4776654
No 238
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.43 E-value=39 Score=31.98 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCcccccccccCchhHHHHHhh----CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 355 HPSTGGFLTHCGWNSTLESIVH----GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 355 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
.++ ++|+=||-||++.|... ++|++.+-.. .+|..- + ++.+++.++|.+++++
T Consensus 68 ~~D--lvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt---~---~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMK--FAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT---E---AYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcC--EEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc---c---CCHHHHHHHHHHHHcC
Confidence 455 99999999999999774 7788887321 122111 1 5678999999999876
No 239
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.16 E-value=1.7e+02 Score=29.07 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=34.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
..|+++-..+.|-.+-...||..|..+ |.+|.+++...+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcc
Confidence 467888889999999999999999765 9999999976443
No 240
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=43.94 E-value=49 Score=31.19 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=57.0
Q ss_pred Cee-eccCcc---hhhhhcCCcccccccc--cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCCc
Q 012063 340 GLV-VPSWAP---QVEVLGHPSTGGFLTH--CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL 413 (471)
Q Consensus 340 ~v~-v~~~~p---q~~~L~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 413 (471)
++. +.+++| ..++|+.++++.|+|+ =|.||++-.++.|||.++- .+-+.|.. +.+ .|+-+-.+.++
T Consensus 207 ~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqd-l~e-~gv~Vlf~~d~--- 278 (322)
T PRK02797 207 NFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQD-LTE-QGLPVLFTGDD--- 278 (322)
T ss_pred cEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHH-HHh-CCCeEEecCCc---
Confidence 443 345555 6889999998888876 5899999999999999885 34444444 445 58877666555
Q ss_pred cCHHHHHHHHHHHh
Q 012063 414 IKREEIAKVIKGLM 427 (471)
Q Consensus 414 ~~~~~l~~~i~~~l 427 (471)
++...+.++=+++.
T Consensus 279 L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 LDEDIVREAQRQLA 292 (322)
T ss_pred ccHHHHHHHHHHHH
Confidence 88887777644443
No 241
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.74 E-value=60 Score=31.18 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=58.4
Q ss_pred ccEEEEEeC-CC---cCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCC-e
Q 012063 267 GSVLFVSFG-SG---GTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQG-L 341 (471)
Q Consensus 267 ~~~i~vs~G-S~---~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-v 341 (471)
++.|.+.-| |. ..++.+.+.++++.+.+.+.++++ .+++.+ ...-+.+.+.....- +
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl-~g~~~e-----------------~e~~~~i~~~~~~~~~l 236 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVL-FGGPDE-----------------EERAEEIAKGLPNAVIL 236 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEE-ecChHH-----------------HHHHHHHHHhcCCcccc
Confidence 468888888 43 567888999999999988855544 433322 001111111111100 1
Q ss_pred eeccCcch-hhhhcCCcccccccccCchhHHHHHhhCCceeec
Q 012063 342 VVPSWAPQ-VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW 383 (471)
Q Consensus 342 ~v~~~~pq-~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 383 (471)
.-..-+.| .+++.+++ +||+.- .|-++=|-+.|+|.|++
T Consensus 237 ~~k~sL~e~~~li~~a~--l~I~~D-Sg~~HlAaA~~~P~I~i 276 (334)
T COG0859 237 AGKTSLEELAALIAGAD--LVIGND-SGPMHLAAALGTPTIAL 276 (334)
T ss_pred CCCCCHHHHHHHHhcCC--EEEccC-ChHHHHHHHcCCCEEEE
Confidence 11112233 66777888 888854 57888899999999985
No 242
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=43.27 E-value=3e+02 Score=27.77 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.9
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 7 HVACMPS-PGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 7 ~i~~~~~-p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
+|++... ..-|-..-...|++.|+++ |++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeec
Confidence 5666644 5578899999999999775 999999876
No 243
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=43.15 E-value=52 Score=32.36 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=30.6
Q ss_pred ccccccCchhHHHHHhhCCceeeccccc--cchhhHHHHHhhhcceeecC
Q 012063 360 GFLTHCGWNSTLESIVHGVPLIAWPLYA--EQRLNAVILSEDLNVALRPP 407 (471)
Q Consensus 360 ~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~~G~g~~~~ 407 (471)
..-|.||.--+-|-=.+|+|.+.+-... -.-.-|.|++. ++++.-.
T Consensus 347 gtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~P 394 (431)
T TIGR01918 347 GTCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHP 394 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCC
Confidence 5667788777777788999999875322 23333677777 5665543
No 244
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=43.14 E-value=51 Score=32.38 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=20.6
Q ss_pred ccccccCchhHHHHHhhCCceeecccc
Q 012063 360 GFLTHCGWNSTLESIVHGVPLIAWPLY 386 (471)
Q Consensus 360 ~~ItHgG~~s~~eal~~GvP~l~~P~~ 386 (471)
..-|.||.--+-|-=.+|+|.|.+-..
T Consensus 347 gtCtrcga~m~keiE~~GIPvV~i~~~ 373 (431)
T TIGR01917 347 GTCTRCGATMVKEIERAGIPVVHICTV 373 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEeec
Confidence 566778777777777899999987543
No 245
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=42.98 E-value=1.4e+02 Score=29.23 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=54.3
Q ss_pred hhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcce-eecCCCCCCccCHHHHHHHHHHHhC
Q 012063 350 VEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVA-LRPPEYENGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 350 ~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g-~~~~~~~~~~~~~~~l~~~i~~~l~ 428 (471)
..++++++ ++|. .=+=++.-|++.|+|.+++ +=|+-+...+++ +|+- ..+.... ++.+.+..++.+.++
T Consensus 280 ~~~l~~~d--l~Vg-~R~HsaI~al~~g~p~i~i---~Y~~K~~~l~~~-~gl~~~~~~i~~---~~~~~l~~~~~e~~~ 349 (385)
T COG2327 280 GGILAACD--LIVG-MRLHSAIMALAFGVPAIAI---AYDPKVRGLMQD-LGLPGFAIDIDP---LDAEILSAVVLERLT 349 (385)
T ss_pred HHHhccCc--eEEe-ehhHHHHHHHhcCCCeEEE---eecHHHHHHHHH-cCCCcccccCCC---CchHHHHHHHHHHHh
Confidence 44677777 5554 2344688899999999998 556666677777 8875 4445454 889999999988887
Q ss_pred CCchHHHHHH
Q 012063 429 GEDGVIIRDR 438 (471)
Q Consensus 429 ~~~~~~~r~~ 438 (471)
+. ++.|++
T Consensus 350 ~~--~~~~~~ 357 (385)
T COG2327 350 KL--DELRER 357 (385)
T ss_pred cc--HHHHhh
Confidence 53 444444
No 246
>PLN02470 acetolactate synthase
Probab=42.68 E-value=49 Score=34.68 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=23.1
Q ss_pred cccccccccCch------hHHHHHhhCCceeecc
Q 012063 357 STGGFLTHCGWN------STLESIVHGVPLIAWP 384 (471)
Q Consensus 357 ~~~~~ItHgG~~------s~~eal~~GvP~l~~P 384 (471)
..+++++|.|-| ++.+|...++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 344888888844 8899999999999985
No 247
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=42.64 E-value=2.2e+02 Score=24.40 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC-CCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHH
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIG-PPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIV 83 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 83 (471)
+-.|-+++..+.|-.+..+.+|-+-+- +|.+|.++--=.. ... .-......++ ++.+.................
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G-~G~rV~ivQFlKg~~~~-GE~~~l~~l~-~~~~~~~g~~f~~~~~~~~~~-- 77 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAG-HGMRVLIVQFLKGGRYS-GELKALKKLP-NVEIERFGKGFVWRMNEEEED-- 77 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHC-TT--EEEEESS--SS---HHHHHHGGGT---EEEE--TT----GGGHHHH--
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHh-CCCEEEEEEEecCCCCc-CHHHHHHhCC-eEEEEEcCCcccccCCCcHHH--
Confidence 346788999999999999999988876 4999999874222 110 1111112333 367766554211111111111
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCccEEEeCCC
Q 012063 84 LAIKRSLSSVRDVFKSLVASTHLMALVVDPF 114 (471)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~ 114 (471)
...+...+ +..++.+.+..+|+||.|-.
T Consensus 78 --~~~~~~~~-~~a~~~i~~~~~dlvILDEi 105 (172)
T PF02572_consen 78 --RAAAREGL-EEAKEAISSGEYDLVILDEI 105 (172)
T ss_dssp --HHHHHHHH-HHHHHHTT-TT-SEEEEETH
T ss_pred --HHHHHHHH-HHHHHHHhCCCCCEEEEcch
Confidence 11111222 33334445668999999974
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=42.61 E-value=1.9e+02 Score=24.54 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
+++.-.|+.|=..=.+.++...+++ |..|.|++.+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCH
Confidence 5677789999999999999999775 9999999976443
No 249
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.60 E-value=1.6e+02 Score=29.49 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
-|+++..++.|-.+-...||..|..+.|.+|.+++...+.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 45777789999999999999999643599999999875544
No 250
>PRK10867 signal recognition particle protein; Provisional
Probab=42.30 E-value=1.5e+02 Score=29.77 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=34.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
.-|+++..++.|-.+-...||..|..+.|++|.+++...+..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 346777789999999999999999764399999999875554
No 251
>PRK06270 homoserine dehydrogenase; Provisional
Probab=41.88 E-value=1.1e+02 Score=29.59 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=36.1
Q ss_pred chhhhhcCCccccccc------ccC---chhHHHHHhhCCceee---ccccccchhhHHHHHhhhcceeecC
Q 012063 348 PQVEVLGHPSTGGFLT------HCG---WNSTLESIVHGVPLIA---WPLYAEQRLNAVILSEDLNVALRPP 407 (471)
Q Consensus 348 pq~~~L~~~~~~~~It------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~~~~~~~G~g~~~~ 407 (471)
.-.++|..++++++|- |+| ..-+.+||.+|+++|+ -|+...-..-....++ .|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEEe
Confidence 4466776655556655 443 4456899999999999 4775433322333334 67766543
No 252
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=41.40 E-value=1.5e+02 Score=29.65 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=22.4
Q ss_pred cCCCccEEEeCCCCccHHHHHHHhCCceEEEe
Q 012063 102 ASTHLMALVVDPFGTDVFDVAREFYVPSYLYF 133 (471)
Q Consensus 102 ~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~ 133 (471)
++.+||++|.+. ....+|+++|+|.+.+.
T Consensus 367 ~~~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 367 ARTEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred HhhCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 344899999997 35567899999987654
No 253
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=41.25 E-value=47 Score=29.09 Aligned_cols=42 Identities=14% Similarity=0.002 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 1 MAQVKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 1 m~~~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|-....+|++--.++-|=+.-...|.++|.++ ||+|.++.++
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~ 42 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSY 42 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECH
Confidence 33334577766666555544479999999765 9999999876
No 254
>PRK04940 hypothetical protein; Provisional
Probab=41.22 E-value=63 Score=27.87 Aligned_cols=31 Identities=3% Similarity=-0.168 Sum_probs=23.6
Q ss_pred CccEEEeCCC-CccHHHHHHHhCCceEEEecc
Q 012063 105 HLMALVVDPF-GTDVFDVAREFYVPSYLYFLT 135 (471)
Q Consensus 105 ~~D~VI~D~~-~~~~~~~A~~lgIP~v~~~~~ 135 (471)
++.++|.-.+ .+|+..+|+++|+|.|.++|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 4677775543 366778999999999998865
No 255
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.09 E-value=2.3e+02 Score=24.27 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEe
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLV 41 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~ 41 (471)
+--|.++...+.|-.+-.+.+|-+.+.+ |++|.++-
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQ 40 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQ 40 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEE
Confidence 4567888889999999999999999875 99997664
No 256
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=40.99 E-value=2.9e+02 Score=26.18 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=71.4
Q ss_pred cEEE-EEeCCC--cCCCHHhHHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeec
Q 012063 268 SVLF-VSFGSG--GTLSYDQLEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVP 344 (471)
Q Consensus 268 ~~i~-vs~GS~--~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~ 344 (471)
+.|. +-.||. -.++.+.+.++++.+...+.++++..++..+ ...-+.+.+.. +++.+.
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-----------------~~~~~~i~~~~--~~~~l~ 239 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-----------------EQRAKRLAEGF--PYVEVL 239 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----------------HHHHHHHHccC--Ccceec
Confidence 3444 444443 3467888899999887666665543343211 00111111111 122222
Q ss_pred c--Ccc-hhhhhcCCcccccccccCchhHHHHHhhCCceeeccccccchhh------HHHHHhhhcceeecCCCCCCccC
Q 012063 345 S--WAP-QVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLYAEQRLN------AVILSEDLNVALRPPEYENGLIK 415 (471)
Q Consensus 345 ~--~~p-q~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n------a~~~~~~~G~g~~~~~~~~~~~~ 415 (471)
+ .+. -.+++.+++ +||+.- -|.++=|.+.|+|+|++=-..|...+ ...+.- . .-. -.+ ++
T Consensus 240 g~~sL~elaali~~a~--l~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~-~--~~c--m~~---I~ 308 (322)
T PRK10964 240 PKLSLEQVARVLAGAK--AVVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS-P--GKS--MAD---LS 308 (322)
T ss_pred CCCCHHHHHHHHHhCC--EEEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC-C--Ccc--ccc---CC
Confidence 2 233 377888999 999965 58899999999999986212221111 111110 0 111 123 78
Q ss_pred HHHHHHHHHHHhC
Q 012063 416 REEIAKVIKGLMH 428 (471)
Q Consensus 416 ~~~l~~~i~~~l~ 428 (471)
+|++-++++++|.
T Consensus 309 ~e~V~~~~~~~l~ 321 (322)
T PRK10964 309 AETVFQKLETLIS 321 (322)
T ss_pred HHHHHHHHHHHhh
Confidence 8999888888763
No 257
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.85 E-value=43 Score=31.54 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=38.9
Q ss_pred cCCcccccccccCchhHHHHHh----hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 354 GHPSTGGFLTHCGWNSTLESIV----HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 354 ~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
..++ ++|+=||-||++.|.. .++|++.+-.. .+|..-+ ++.+++.++|++++++
T Consensus 67 ~~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 67 QYCD--LVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQ------IPREYMTDKLLPVLEG 124 (296)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeec------cCHHHHHHHHHHHHcC
Confidence 3456 9999999999999975 37888887321 1232222 6688899999999876
No 258
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=40.30 E-value=39 Score=32.73 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=24.7
Q ss_pred hhcCCcccccccccCchh---HHHHHhhCCceeec
Q 012063 352 VLGHPSTGGFLTHCGWNS---TLESIVHGVPLIAW 383 (471)
Q Consensus 352 ~L~~~~~~~~ItHgG~~s---~~eal~~GvP~l~~ 383 (471)
++.+-+-+++|++||+-| ...|...|+|.++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 344433339999999997 89999999999873
No 259
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.56 E-value=62 Score=32.72 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=31.3
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEEeCCC
Q 012063 6 HHVACMPSPGMGHLIPH------------VELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~------------l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
.+|++...|+.=.+.|. .+||+++..+ |++||+++++.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 48888888888777775 6899999775 99999999764
No 260
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=39.38 E-value=1.3e+02 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=31.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
-+++.-.|+.|-.+-.++++...+++ |..|.|++.+.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 35667778999999999999988776 99999999763
No 261
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.72 E-value=47 Score=31.45 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=39.5
Q ss_pred cCCcccccccccCchhHHHHHhh----CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 354 GHPSTGGFLTHCGWNSTLESIVH----GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 354 ~~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
..++ ++|+=||-||++.|... ++|++.+... .+|..-+ +..+++.+++++++++
T Consensus 71 ~~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 71 DGCE--LVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE------AEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc------CCHHHHHHHHHHHHcC
Confidence 3456 99999999999998764 7888887431 1233222 5678899999999876
No 262
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=38.69 E-value=2.4e+02 Score=28.14 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=22.0
Q ss_pred cCCCccEEEeCCCCccHHHHHHHhCCceEEE
Q 012063 102 ASTHLMALVVDPFGTDVFDVAREFYVPSYLY 132 (471)
Q Consensus 102 ~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 132 (471)
++.+||++|... -+..+|+++|||.+-+
T Consensus 352 ~~~~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 352 LEFEPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred hhCCCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 445999999884 3566899999997763
No 263
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=38.58 E-value=92 Score=28.06 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=35.2
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhh
Q 012063 8 VACMPS-PGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAI 51 (471)
Q Consensus 8 i~~~~~-p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~ 51 (471)
|.+.+. ++.|-.+-.+.||.+|+++ |-.|+++-...+.+....
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~-G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAAR-GARVALIDADPNQPLAKW 47 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeCCCCCcHHHH
Confidence 445554 8999999999999999876 999999998888774433
No 264
>PRK14099 glycogen synthase; Provisional
Probab=38.22 E-value=50 Score=33.70 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 4 VKHHVACMPS--------PGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 4 ~~~~i~~~~~--------p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
++|+|++++. ++.|+ -.-+|.++|+++ ||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~d--v~~~lp~~l~~~-g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLAD--VAGALPAALKAH-GVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHH--HHHHHHHHHHHC-CCcEEEEeCCC
Confidence 5689999876 34444 456788899765 99999999854
No 265
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=38.19 E-value=49 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.348 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012063 417 EEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVHKWKNQ 470 (471)
Q Consensus 417 ~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (471)
.+|...+..+|. .+..+-..+...+-.-+++-|+.-..+|+=+.+++++
T Consensus 2 ~elt~~v~~lL~-----qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~q 50 (54)
T PF06825_consen 2 QELTAFVQNLLQ-----QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQ 50 (54)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH------
T ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 578888988884 6888888888887777777787777777777776654
No 266
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=38.15 E-value=1.4e+02 Score=28.48 Aligned_cols=38 Identities=29% Similarity=0.254 Sum_probs=30.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
|.=++.++.|-+-=.+.|++.|.++ |++|.+++-.+..
T Consensus 33 VGNitvGGTGKTP~v~~La~~l~~~-G~~~~IlSRGYg~ 70 (311)
T TIGR00682 33 VGNLSVGGTGKTPVVVWLAELLKDR-GLRVGVLSRGYGS 70 (311)
T ss_pred EeccccCCcChHHHHHHHHHHHHHC-CCEEEEECCCCCC
Confidence 3445678999999999999999775 9999999855433
No 267
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=38.15 E-value=52 Score=33.33 Aligned_cols=39 Identities=26% Similarity=0.214 Sum_probs=27.0
Q ss_pred cEEEEEcC---CC---ccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 6 HHVACMPS---PG---MGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 6 ~~i~~~~~---p~---~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
|||+++++ |. -|=-.-.-.|+++|+++ ||+|.+++|...
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~-G~~v~v~~p~y~ 45 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAAL-GHDVRVLLPAYG 45 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence 57777775 21 22223456899999765 999999997544
No 268
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=37.86 E-value=3.3e+02 Score=27.80 Aligned_cols=40 Identities=5% Similarity=0.048 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
-+++.-.|+.|-..=.++++.+.+++ |.+|.|++.+....
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~ 304 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRA 304 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHH
Confidence 45777779999999999999999876 99999999765443
No 269
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.34 E-value=56 Score=30.34 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=37.5
Q ss_pred CCcccccccccCchhHHHHHhh-CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 355 HPSTGGFLTHCGWNSTLESIVH-GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 355 ~~~~~~~ItHgG~~s~~eal~~-GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
.++ ++|+=||-||++.+... .+|++.+-. - .+|..- + ++.+++.+++++++++
T Consensus 52 ~~D--~vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lGFL~---~---~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NAD--VIITIGGDGTILRTLQRAKGPILGINM--------G------GLGFLT---E---IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCC--EEEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCccCc---c---cCHHHHHHHHHHHHcC
Confidence 455 99999999999999884 456665521 1 122221 2 6789999999999986
No 270
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.22 E-value=2.7e+02 Score=23.99 Aligned_cols=51 Identities=24% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCceeecccc----ccc---hhhHHHHHhhhcceeecCCC---------CCCccCHHHHHHHHHHHhC
Q 012063 377 GVPLIAWPLY----AEQ---RLNAVILSEDLNVALRPPEY---------ENGLIKREEIAKVIKGLMH 428 (471)
Q Consensus 377 GvP~l~~P~~----~DQ---~~na~~~~~~~G~g~~~~~~---------~~~~~~~~~l~~~i~~~l~ 428 (471)
++|++++|-. ... ..|..++.+ .|+=+.-... .+...+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 333 345667777 6765443321 1334667888888877664
No 271
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.96 E-value=3.3e+02 Score=29.49 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=30.5
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 5 KHHVACMPS--PGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 5 ~~~i~~~~~--p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+.++++++. |+.|-..=...||..|+.. |++|.++-...
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~-G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 445655555 6788899999999999875 99999997543
No 272
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=36.54 E-value=1.6e+02 Score=27.88 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRH-DISVTFLVPTIG 45 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~-Gh~Vt~~~~~~~ 45 (471)
+|+++-....|++.=..++.++|.++. +.+|++++.+..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~ 40 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGF 40 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhH
Confidence 588888899999999999999996654 699999997633
No 273
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.34 E-value=56 Score=26.91 Aligned_cols=37 Identities=19% Similarity=0.012 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEe
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLV 41 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~ 41 (471)
.|++|++.+.+.-||=.-.--+++.|+. .|++|....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g 47 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLG 47 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh-CCceEEecC
Confidence 4789999999999999999999999976 499998865
No 274
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.07 E-value=70 Score=29.73 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=39.6
Q ss_pred chhhhhcCCcccccccccCchhHHHHHh----hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHH
Q 012063 348 PQVEVLGHPSTGGFLTHCGWNSTLESIV----HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVI 423 (471)
Q Consensus 348 pq~~~L~~~~~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i 423 (471)
++.++...++ ++|+=||-||++.|.. .++|++.+-.. .+|..-. ++.+++.+.+
T Consensus 35 ~~~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~~------~~~~~~~~~l 92 (272)
T PRK02231 35 SLEEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLTD------IDPKNAYEQL 92 (272)
T ss_pred ChHHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccccc------CCHHHHHHHH
Confidence 3344444566 9999999999998765 36788777321 1332222 5678888888
Q ss_pred HHHhC
Q 012063 424 KGLMH 428 (471)
Q Consensus 424 ~~~l~ 428 (471)
.++++
T Consensus 93 ~~~~~ 97 (272)
T PRK02231 93 EACLE 97 (272)
T ss_pred HHHHh
Confidence 88887
No 275
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.57 E-value=48 Score=30.87 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=35.2
Q ss_pred ccccccCchhHHHHHh---hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 360 GFLTHCGWNSTLESIV---HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 360 ~~ItHgG~~s~~eal~---~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
++|.-||-||+++++. .++|++.++... + |..- + +..+++.+++.+++++
T Consensus 60 ~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl~---~---~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 60 FIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFLT---E---VEPEETFFALSRLLEG 112 (277)
T ss_pred EEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Cccc---c---CCHHHHHHHHHHHHcC
Confidence 9999999999999984 356877776422 1 1111 1 5578888888888875
No 276
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=35.42 E-value=2.9e+02 Score=27.59 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=34.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
..|+++-.++.|-.+-...||..|.++ |++|.+++...+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccch
Confidence 356788889999999999999999765 99999999875543
No 277
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.26 E-value=3.2e+02 Score=27.29 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=43.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC--chhhhhhhccCCCCeEEEEc
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP--SKAITSVLQGLPEHINHVLL 67 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 67 (471)
..|+++-.=+.|-.+-.-.||+.|.+ +|+.|-+++...+.+ ..+++.+.... ++.|+..
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~--~v~~f~~ 161 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQV--GVPFFGS 161 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHc--CCceecC
Confidence 45677777788999999999999977 599999999876655 23444444332 4666654
No 278
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=35.05 E-value=36 Score=30.74 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=22.5
Q ss_pred CccEEE-eCCCCc-cHHHHHHHhCCceEEEecch
Q 012063 105 HLMALV-VDPFGT-DVFDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 105 ~~D~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~~ 136 (471)
-||+++ .|+..- -+..=|+++|||+|.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 499876 687542 33457888999999876544
No 279
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.44 E-value=58 Score=30.10 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=36.8
Q ss_pred CcccccccccCchhHHHHHhh-----CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 356 PSTGGFLTHCGWNSTLESIVH-----GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 356 ~~~~~~ItHgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
++ ++|+=||-||++.|+.. .+|.+.+-..+ .+|.. .+ ++.+++.+++.+++++
T Consensus 40 ~D--~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL---~~---~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 AN--IIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY---CD---FHIDDLDKMIQAITKE 97 (264)
T ss_pred cc--EEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc---cc---CCHHHHHHHHHHHHcC
Confidence 45 99999999999999874 55666653200 12222 12 6688999999998876
No 280
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.13 E-value=82 Score=27.62 Aligned_cols=39 Identities=23% Similarity=0.121 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
.+.+|++.+.++-.|-....-++..|.. +|++|+++...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~ 121 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRD 121 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCC
Confidence 3579999999999999999999999955 59999998754
No 281
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=34.06 E-value=58 Score=20.71 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 012063 415 KREEIAKVIKGLMHGEDGVIIRDRMNRL 442 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~r~~a~~l 442 (471)
|+++|.+||..+..+. ..+++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5789999999998653 5677666653
No 282
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=33.96 E-value=3.4e+02 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++.--|+.|-.+=++.+|..++++ |.+|.|++.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EE 120 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEE 120 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCc
Confidence 4666678999999999999999775 88999998753
No 283
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=33.91 E-value=3.1e+02 Score=28.27 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=21.9
Q ss_pred cCCCccEEEeCCCCccHHHHHHHhCCceEEE
Q 012063 102 ASTHLMALVVDPFGTDVFDVAREFYVPSYLY 132 (471)
Q Consensus 102 ~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 132 (471)
++.+||+||.+. ....+|+++|||++..
T Consensus 359 ~~~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 359 AEAAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HhcCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 344899999876 4667899999997654
No 284
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=33.77 E-value=3.3e+02 Score=23.91 Aligned_cols=35 Identities=3% Similarity=0.048 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEeCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLR-HDISVTFLVPT 43 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r-~Gh~Vt~~~~~ 43 (471)
++|+++..+.-+- +.+|.+++.+. .+++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 6888888766433 34666667443 13778776554
No 285
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=33.74 E-value=3.3e+02 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
.+++.....|-..-++.-++....+ |-+|.++++..+
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~iD 43 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAID 43 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEecccc
Confidence 3666778899999999999999776 999999997643
No 286
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=33.55 E-value=66 Score=32.57 Aligned_cols=52 Identities=13% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCcccccccccCchhHHHHHhh----CCceeeccccccchhhHHHHHhhhc-ceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 355 HPSTGGFLTHCGWNSTLESIVH----GVPLIAWPLYAEQRLNAVILSEDLN-VALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 355 ~~~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
.++ ++|+=||-||++.|... ++|++.+ | .| +|..-. ++.+++.++|.+++++
T Consensus 262 ~~D--lVIsiGGDGTlL~Aar~~~~~~iPILGI--------N-------~G~LGFLt~------i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVD--LVITLGGDGTVLWAASMFKGPVPPVVPF--------S-------MGSLGFMTP------FHSEQYRDCLDAILKG 318 (508)
T ss_pred CCC--EEEEECCcHHHHHHHHHhccCCCcEEEE--------e-------CCCcceecc------cCHHHHHHHHHHHHcC
Confidence 455 99999999999999774 4676665 2 22 343222 6789999999999876
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=33.35 E-value=68 Score=28.84 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=31.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
-+++.-.|+.|-..-..+++...+++ |..|.|++....
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~ 64 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENT 64 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCC
Confidence 45677789999999999998887665 999999997533
No 288
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=33.01 E-value=54 Score=22.38 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=33.7
Q ss_pred CCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 012063 407 PEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQLVH 465 (471)
Q Consensus 407 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (471)
+...+|.++.+++...++.+..... ........+.+-+..+..++..-+.++|++
T Consensus 10 D~d~~G~i~~~el~~~~~~~~~~~~----~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 10 DKDGDGYISKEELRRALKHLGRDMS----DEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp STTSSSEEEHHHHHHHHHHTTSHST----HHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred cCCccCCCCHHHHHHHHHHhccccc----HHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 4445688999999999998875311 222222333333334666776677777765
No 289
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.86 E-value=73 Score=29.30 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=35.8
Q ss_pred ccccccCchhHHHHHh-hCCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 360 GFLTHCGWNSTLESIV-HGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 360 ~~ItHgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
++|+=||-||++.|+. .++|++.+-.. .+|.... ++.+++.+++.+++++
T Consensus 44 ~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~~------~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 44 LIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLSS------YTLEEIDRFLEDLKNW 94 (256)
T ss_pred EEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccccc------cCHHHHHHHHHHHHcC
Confidence 9999999999999987 46776666311 1222221 6678899999998875
No 290
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=32.60 E-value=2e+02 Score=28.75 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.1
Q ss_pred cccccccCc------hhHHHHHhhCCceeec
Q 012063 359 GGFLTHCGW------NSTLESIVHGVPLIAW 383 (471)
Q Consensus 359 ~~~ItHgG~------~s~~eal~~GvP~l~~ 383 (471)
+++++|.|- +.+.+|.+.++|+|++
T Consensus 65 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 65 VAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred EEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 378888774 4788999999999999
No 291
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=32.58 E-value=80 Score=27.74 Aligned_cols=37 Identities=24% Similarity=0.037 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
+.+|++.+.++-.|-....-++..|.. +|++|+++..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~ 118 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGR 118 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCC
Confidence 579999999999999999999999954 6999988763
No 292
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=32.56 E-value=57 Score=27.95 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=24.1
Q ss_pred cCHHH-HHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 17 GHLIP-HVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 17 GH~~P-~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
||... .+.+.++|.+++||+|.++.++..
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 78866 889999998667999999987633
No 293
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=32.54 E-value=1.3e+02 Score=25.84 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=25.2
Q ss_pred hhhhhcCCcccccccccCchhHHHHHh---------hCCceeecc
Q 012063 349 QVEVLGHPSTGGFLTHCGWNSTLESIV---------HGVPLIAWP 384 (471)
Q Consensus 349 q~~~L~~~~~~~~ItHgG~~s~~eal~---------~GvP~l~~P 384 (471)
...+|-..+..+++--||.||+-|.+. +.+|++++=
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 444555544447777799999998744 489998864
No 294
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=32.51 E-value=1e+02 Score=25.32 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=28.3
Q ss_pred ccEEEEEeCCCcCCCHHhHHHHHHHHHhCCCceEEEEe
Q 012063 267 GSVLFVSFGSGGTLSYDQLEELALGLELSEQQFLWVVK 304 (471)
Q Consensus 267 ~~~i~vs~GS~~~~~~~~~~~~~~al~~~~~~~~~~~~ 304 (471)
..+|+|.+||......+.++++++.+. .+.+++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 458999999997777888999998875 3466666543
No 295
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.18 E-value=72 Score=29.42 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=21.7
Q ss_pred cEEEEEeCCCcCCCHH-hHHHHHHHHHhC--CCceEEEEec
Q 012063 268 SVLFVSFGSGGTLSYD-QLEELALGLELS--EQQFLWVVKS 305 (471)
Q Consensus 268 ~~i~vs~GS~~~~~~~-~~~~~~~al~~~--~~~~~~~~~~ 305 (471)
.+|+|||||....... -+..+.+.++.. +..+.|.+.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 4789999997554444 566666666554 4678887654
No 296
>PRK11823 DNA repair protein RadA; Provisional
Probab=32.14 E-value=3.7e+02 Score=27.09 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
-+++.-.|+.|-.+=++.++..++++ |.+|.|++.+..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees 119 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEES 119 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcccc
Confidence 45677779999999999999999765 999999997543
No 297
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=31.90 E-value=63 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
.-.++++-.|+.|-..=..+||.+|.+ +|+.|+|++.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAP 142 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 347889999999999999999999985 59999999744
No 298
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=31.84 E-value=3.4e+02 Score=23.52 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=28.4
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 6 HHVACMPS--PGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 6 ~~i~~~~~--p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
++++.+.. ++.|=..=...||..|+++ |++|.++-..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 55544443 6778899999999999875 9999998643
No 299
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=31.15 E-value=5.3e+02 Score=26.00 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=57.3
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEeCC-CCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHH
Q 012063 8 VACMPS-PGMGHLIPHVELAKQLVLRHDISVTFLVPT-IGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLA 85 (471)
Q Consensus 8 i~~~~~-p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 85 (471)
|++... ..-|-..-...|++.|.++ |++|..+-+. ...+. .+..... +.....+ +..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~g~d~~D~-~~~~~~~----g~~~~~l---------d~~------ 60 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKVGPDYIDP-MFHTQAT----GRPSRNL---------DSF------ 60 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEccCCCCCCH-HHHHHHh----CCchhhC---------Ccc------
Confidence 444433 4468889999999999765 9999998752 11110 1101100 1000000 000
Q ss_pred HHHhHHHHHHHHHHhhcCCCccEEEeCCCC------------ccHHHHHHHhCCceEEEecch
Q 012063 86 IKRSLSSVRDVFKSLVASTHLMALVVDPFG------------TDVFDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 86 ~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~------------~~~~~~A~~lgIP~v~~~~~~ 136 (471)
....+.+.+.+.++ ..+.|++|++... .....+|+.++.|++......
T Consensus 61 -~~~~~~i~~~~~~~--~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 61 -FMSEAQIQECFHRH--SKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred -cCCHHHHHHHHHHh--cccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 01223333333332 2368999977641 125589999999998887654
No 300
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=30.99 E-value=3e+02 Score=24.62 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=42.6
Q ss_pred hHHhhcCCC-eeeccCcchhh-----------hhcCCcccccccccC-----chhHHHHHhhCCceeeccccccc--hhh
Q 012063 332 FLDRTKEQG-LVVPSWAPQVE-----------VLGHPSTGGFLTHCG-----WNSTLESIVHGVPLIAWPLYAEQ--RLN 392 (471)
Q Consensus 332 ~~~~~~~~~-v~v~~~~pq~~-----------~L~~~~~~~~ItHgG-----~~s~~eal~~GvP~l~~P~~~DQ--~~n 392 (471)
+.+++...+ +++..|-|+.. +.+.-+..++|.-+| +.|...|+..|+|+.++|-..+. ..-
T Consensus 119 l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~~~~G 198 (220)
T TIGR00732 119 LAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLNSPESDG 198 (220)
T ss_pred HHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCccchH
Confidence 334444444 66766655432 222223335555554 56777889999999999976553 222
Q ss_pred HHHHHhhhcceee
Q 012063 393 AVILSEDLNVALR 405 (471)
Q Consensus 393 a~~~~~~~G~g~~ 405 (471)
..++-+ .|+...
T Consensus 199 ~~~Li~-~GA~~i 210 (220)
T TIGR00732 199 CHKLIE-QGAALI 210 (220)
T ss_pred HHHHHH-CCCEEE
Confidence 355556 586544
No 301
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=30.78 E-value=97 Score=28.52 Aligned_cols=37 Identities=16% Similarity=-0.001 Sum_probs=25.1
Q ss_pred HHhhcCCCccEEEe-----CC-CCccHHHHHHHhCCceEEEec
Q 012063 98 KSLVASTHLMALVV-----DP-FGTDVFDVAREFYVPSYLYFL 134 (471)
Q Consensus 98 ~~~~~~~~~D~VI~-----D~-~~~~~~~~A~~lgIP~v~~~~ 134 (471)
.++.+..++|+|++ |. ...-+..+|+.||+|++++..
T Consensus 104 aa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 104 AAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 33344458999995 32 234455799999999888654
No 302
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.69 E-value=4.4e+02 Score=26.02 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
.|+++-..+.|-.+-...||..+..+ |++|.+++...+.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR 246 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFR 246 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccC
Confidence 45666667899999999999999765 9999999986554
No 303
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=30.64 E-value=43 Score=28.03 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=23.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|.++-.+..|+ ++|..|+.+ ||+|++.+.+
T Consensus 2 I~ViGaG~~G~-----AlA~~la~~-g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGT-----ALAALLADN-GHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHH-----HHHHHHHHC-TEEEEEETSC
T ss_pred EEEECcCHHHH-----HHHHHHHHc-CCEEEEEecc
Confidence 55666565554 789999876 9999999865
No 304
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=30.12 E-value=3.5e+02 Score=25.37 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEEeCC
Q 012063 3 QVKHHVACMPSPGMGHLIPHVELAKQLVLR-HDISVTFLVPT 43 (471)
Q Consensus 3 ~~~~~i~~~~~p~~GH~~P~l~La~~L~~r-~Gh~Vt~~~~~ 43 (471)
+++++|+++.++.... +.+|.++.... .+++|..+.+.
T Consensus 87 ~~~~ri~vl~Sg~g~n---l~al~~~~~~~~~~~~i~~visn 125 (286)
T PRK13011 87 AARPKVLIMVSKFDHC---LNDLLYRWRIGELPMDIVGVVSN 125 (286)
T ss_pred ccCceEEEEEcCCccc---HHHHHHHHHcCCCCcEEEEEEEC
Confidence 3578999999886444 44455554221 25888887653
No 305
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.03 E-value=70 Score=33.37 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=37.5
Q ss_pred cccccccCchhHHHHHhh----CCceeeccccccchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 359 GGFLTHCGWNSTLESIVH----GVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 359 ~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
+++|+-||-||++.+... ++|++.+-... +|.. .+ ++.+++.++|.+++++
T Consensus 350 dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~--------------lGFL---~~---~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 350 SHIISIGGDGTVLRASKLVNGEEIPIICINMGT--------------VGFL---TE---FSKEEIFKAIDSIISG 404 (569)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC--------------CCcC---cc---cCHHHHHHHHHHHHcC
Confidence 499999999999999774 77888773211 2221 12 6789999999999876
No 306
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.03 E-value=1.7e+02 Score=28.66 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=33.2
Q ss_pred CcEE-EEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 5 KHHV-ACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 5 ~~~i-~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
++.| .|+-.=+.|-.+---.||..+.++ |..+.+++.+.+.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTFRA 142 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeeccccc
Confidence 4444 566667889999999999999665 99999999775554
No 307
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=29.78 E-value=65 Score=29.04 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHH------------HHHHHHHHHhCCCcEEEEEeCC
Q 012063 6 HHVACMPSPGMGHLIP------------HVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P------------~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|+|++...|+.=.+.| -.+||++|.++ ||+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~-G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAA-GHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhC-CCEEEEEECc
Confidence 3555555555444433 26788999776 9999999743
No 308
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.66 E-value=88 Score=24.84 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=31.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
||++.+.++-.|-.-..-++.-|.. .|++|++..+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCCC
Confidence 5889999999999999999998855 59999998754
No 309
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=29.46 E-value=3.3e+02 Score=25.93 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=33.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
..|+++..++.|-.+=...||..|..+ |++|.+++.+.+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCcc
Confidence 356788889999999999999999765 999999987643
No 310
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.41 E-value=85 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=25.8
Q ss_pred cEEEEEeCCCcCCCHHhHHHHHHHHHhC-C-CceEEEEe
Q 012063 268 SVLFVSFGSGGTLSYDQLEELALGLELS-E-QQFLWVVK 304 (471)
Q Consensus 268 ~~i~vs~GS~~~~~~~~~~~~~~al~~~-~-~~~~~~~~ 304 (471)
.+++++|||......+.+..+.+.++.. + ..+-|.+-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4899999998664455677788888543 3 36666654
No 311
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=29.21 E-value=3.6e+02 Score=27.80 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCccEEE----eCCCCccHHHHHHHhCCceEEEecch
Q 012063 95 DVFKSLVASTHLMALV----VDPFGTDVFDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 95 ~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 136 (471)
..++...+.+.+|.+| ||-..+..+..|-+++||.+++...+
T Consensus 79 dsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 79 DSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 3344445567899877 79887777788889999998887654
No 312
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=29.09 E-value=1.7e+02 Score=27.38 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=20.5
Q ss_pred ccccccCchhHHHHHhh-----CCceee-cccc
Q 012063 360 GFLTHCGWNSTLESIVH-----GVPLIA-WPLY 386 (471)
Q Consensus 360 ~~ItHgG~~s~~eal~~-----GvP~l~-~P~~ 386 (471)
++|.-||-||+.|++.. ..|.++ +|..
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 89999999999997643 345554 8964
No 313
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=29.07 E-value=2.8e+02 Score=21.55 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHHHHhHHHHHHHH
Q 012063 18 HLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIKRSLSSVRDVF 97 (471)
Q Consensus 18 H~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (471)
+=.=++.+|+.|.. .|+++ ++++ ....+... .|+.+..+..... + ..+.+
T Consensus 10 ~K~~~~~~a~~l~~-~G~~i--~AT~------gTa~~L~~--~Gi~~~~v~~~~~--~-------------g~~~i---- 59 (112)
T cd00532 10 VKAMLVDLAPKLSS-DGFPL--FATG------GTSRVLAD--AGIPVRAVSKRHE--D-------------GEPTV---- 59 (112)
T ss_pred cHHHHHHHHHHHHH-CCCEE--EECc------HHHHHHHH--cCCceEEEEecCC--C-------------CCcHH----
Confidence 44557899999976 49976 3444 22233332 2465544322110 0 11222
Q ss_pred HHhhcC-CCccEEEe--CCCC-----ccH---HHHHHHhCCceEE
Q 012063 98 KSLVAS-THLMALVV--DPFG-----TDV---FDVAREFYVPSYL 131 (471)
Q Consensus 98 ~~~~~~-~~~D~VI~--D~~~-----~~~---~~~A~~lgIP~v~ 131 (471)
.+++.+ .++|+||. |... ..+ ..+|-.++||+++
T Consensus 60 ~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 60 DAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 222344 58999996 3222 112 2478889999775
No 314
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=28.94 E-value=1.2e+02 Score=29.20 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCee-eccCcc---hhhhhcCCcccccccc--cCchhHHHHHhhCCceeeccccccchhhHHHHHhhhcceeecCCCCCC
Q 012063 339 QGLV-VPSWAP---QVEVLGHPSTGGFLTH--CGWNSTLESIVHGVPLIAWPLYAEQRLNAVILSEDLNVALRPPEYENG 412 (471)
Q Consensus 339 ~~v~-v~~~~p---q~~~L~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 412 (471)
.++. +.+++| ..++|..++++.|.+. =|.|++.-.|+.|+|.++- .+-+.+ .-+.+ .|+=+.....+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l~~-~~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDLKE-QGIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHHHh-CCCeEEecccc--
Confidence 3554 456777 6789999998777764 6899999999999999875 333433 34556 68777766565
Q ss_pred ccCHHHHHHHHHHHhC
Q 012063 413 LIKREEIAKVIKGLMH 428 (471)
Q Consensus 413 ~~~~~~l~~~i~~~l~ 428 (471)
++...|+++=+++..
T Consensus 318 -L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -LDEALVREAQRQLAN 332 (360)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 999999999887775
No 315
>PRK13236 nitrogenase reductase; Reviewed
Probab=28.81 E-value=1e+02 Score=28.95 Aligned_cols=42 Identities=7% Similarity=0.024 Sum_probs=33.4
Q ss_pred CCCCCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 1 MAQVKHHVACMP-SPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 1 m~~~~~~i~~~~-~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
|....++++-+. =++-|-.+-.+.||-.|+++ |++|.++-..
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~-G~rVLliD~D 43 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEM-GQRILIVGCD 43 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHC-CCcEEEEEcc
Confidence 666667775553 37889999999999999886 9999999543
No 316
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.70 E-value=4.5e+02 Score=27.17 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecc
Q 012063 90 LSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLT 135 (471)
Q Consensus 90 ~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 135 (471)
.......++++ ++.++++||.|.. +..+|+++|++.+...+.
T Consensus 131 ~~e~~~~~~~l-~~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDL-RARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHH-HHCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 34445555554 3468999999973 567999999999988764
No 317
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=28.61 E-value=53 Score=27.86 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=19.4
Q ss_pred hHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCC
Q 012063 392 NAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHG 429 (471)
Q Consensus 392 na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 429 (471)
+-.-.++..|+|+. +|+|++.++|.++++.
T Consensus 103 d~~~Fe~~cGVGV~--------VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 103 DVAEFEKACGVGVV--------VTPEQIEAAVEKYIEE 132 (164)
T ss_dssp -HHHHHHTTTTT------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCeE--------ECHHHHHHHHHHHHHH
Confidence 33334444999998 6899999999999974
No 318
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=28.35 E-value=1.2e+02 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCcCCCHHhHHHHHHHHHhCC
Q 012063 266 SGSVLFVSFGSGGTLSYDQLEELALGLELSE 296 (471)
Q Consensus 266 ~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~ 296 (471)
.+..+|+++||........++..++.|...+
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 3457999999976545556777777776643
No 319
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.95 E-value=63 Score=31.21 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.8
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 15 GMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 15 ~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
=+|++----.||+.|++++|++|++.+..
T Consensus 10 NyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 10 NYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred CCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 47999999999999998889999998854
No 320
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=27.47 E-value=1.9e+02 Score=19.10 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 012063 415 KREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAA 449 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~ 449 (471)
|.+++..+|+++|.+.+.+.+. .+.+++.+.+.
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT--~k~vr~~Le~~ 33 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVT--KKQVREQLEER 33 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhh--HHHHHHHHHHH
Confidence 4678999999999875544443 34444444443
No 321
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=27.34 E-value=1.1e+02 Score=29.81 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=38.9
Q ss_pred hCCceeeccccccchhhHHH-HHhhhcceeecC---CCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 012063 376 HGVPLIAWPLYAEQRLNAVI-LSEDLNVALRPP---EYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLKDAA 446 (471)
Q Consensus 376 ~GvP~l~~P~~~DQ~~na~~-~~~~~G~g~~~~---~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~ 446 (471)
-|||+|-+-|-.|-...... .++ .|.|-.=. .++.+.+|+++|.+-|++. +.+.+--+.+++++
T Consensus 499 RGvpqIEVtFevDangiL~VsAeD-Kgtg~~~kitItNd~~rLt~EdIerMv~eA------ekFAeeDk~~Keki 566 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAED-KGTGKKEKITITNDKGRLTPEDIERMVNEA------EKFAEEDKKLKEKI 566 (663)
T ss_pred CCCccEEEEEEEccCceEEEEeec-cCCCCcceEEEecCCCCCCHHHHHHHHHHH------HHHhhhhHHHHHHH
Confidence 37999999888776544332 334 56663311 2334569999999888765 34444455555544
No 322
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=27.31 E-value=50 Score=30.10 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 21 PHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 21 P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
-.-.|+++|+++ ||+|++++|..
T Consensus 21 v~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHHhc-CCeEEEEEccc
Confidence 356789999875 99999999754
No 323
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=26.88 E-value=4.7e+02 Score=27.33 Aligned_cols=106 Identities=8% Similarity=-0.006 Sum_probs=60.1
Q ss_pred CCcEEEEEcC-----CCccCHHHHHHHHHHHHhCCCcEEEEE-eCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchh
Q 012063 4 VKHHVACMPS-----PGMGHLIPHVELAKQLVLRHDISVTFL-VPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVK 77 (471)
Q Consensus 4 ~~~~i~~~~~-----p~~GH~~P~l~La~~L~~r~Gh~Vt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~ 77 (471)
.|+.|.++.. |..-|+.-+-.+.++-++..|.....+ .++..- +++.- .. .
T Consensus 63 ~kP~IgIvns~~d~~p~h~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~c-------------DGit~---G~----~--- 119 (601)
T TIGR01196 63 KRPNLAIITAYNDMLSAHQPFKNYPDLIKKALQEANAVAQVAGGVPAMC-------------DGVTQ---GY----D--- 119 (601)
T ss_pred CCCEEEEEeccccCccccccHHHHHHHHHHHHHHCCCEeEEeCCcCccC-------------CCccC---CC----c---
Confidence 4778877765 566677777777777766667666665 222111 12210 00 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcCCCccEEE----eCCCCccHHHHHHHh-CCceEEEecch
Q 012063 78 AEIQIVLAIKRSLSSVRDVFKSLVASTHLMALV----VDPFGTDVFDVAREF-YVPSYLYFLTN 136 (471)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~l-gIP~v~~~~~~ 136 (471)
...+ -..+.+.+...++..++...+|.+| ||-..+..+..|-.+ ++|.+.+...+
T Consensus 120 -GM~~---SL~SRdlIA~sie~~l~~~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGp 179 (601)
T TIGR01196 120 -GMEL---SLFSRDVIAMSTAIGLSHNMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGP 179 (601)
T ss_pred -ccch---hhhcHHHHHHHHHHHhcCCCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCC
Confidence 0011 0111122222333344566899777 798777777788888 89988876654
No 324
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=26.83 E-value=2.3e+02 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.8
Q ss_pred cccccccC------chhHHHHHhhCCceeecc
Q 012063 359 GGFLTHCG------WNSTLESIVHGVPLIAWP 384 (471)
Q Consensus 359 ~~~ItHgG------~~s~~eal~~GvP~l~~P 384 (471)
+++++|.| .+++.+|.+.++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 37888877 458899999999999984
No 325
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=1.2e+02 Score=29.85 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
|++---|+-|--+=+++++..|+++ | +|.|++++....
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~ 133 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQ 133 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHH
Confidence 4444558999999999999999886 8 999999875444
No 326
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=26.42 E-value=3e+02 Score=24.12 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=78.1
Q ss_pred cEEEEEeCCCcCCCHHh-HHHHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccC
Q 012063 268 SVLFVSFGSGGTLSYDQ-LEELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSW 346 (471)
Q Consensus 268 ~~i~vs~GS~~~~~~~~-~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ 346 (471)
++.++.-.... +.+. -.++++.|+..+..++...|.- .-|.+.|.+++.++=+
T Consensus 52 pt~~~~~k~~~--~r~~~d~~l~~~l~~~~~dlvvLAGyM-------------------rIL~~~fl~~~~grIl----- 105 (200)
T COG0299 52 PTVVLDRKEFP--SREAFDRALVEALDEYGPDLVVLAGYM-------------------RILGPEFLSRFEGRIL----- 105 (200)
T ss_pred CEEEeccccCC--CHHHHHHHHHHHHHhcCCCEEEEcchH-------------------HHcCHHHHHHhhcceE-----
Confidence 34555444432 3443 4569999999888877665542 2256777776665422
Q ss_pred cchhhhhcCCcccccccccCchhHHHHHhhCCceeecccc-ccc-hhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHH
Q 012063 347 APQVEVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAWPLY-AEQ-RLNAVILSEDLNVALRPPEYENGLIKREEIAKVIK 424 (471)
Q Consensus 347 ~pq~~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~-~DQ-~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~ 424 (471)
-=||+ +.=.++|..+..+|+.+|+..-.+-.. .|- .+-+-.+.+ ..+.+...+ |.|.|.+.|.
T Consensus 106 ------NIHPS--LLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~D----t~etl~~RV~ 170 (200)
T COG0299 106 ------NIHPS--LLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPGD----TAETLEARVL 170 (200)
T ss_pred ------ecCcc--cccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCCC----CHHHHHHHHH
Confidence 23888 888999999999999999998665532 221 111111111 123333332 7888888886
Q ss_pred HHhCCCchHHHHHHHHHHHH
Q 012063 425 GLMHGEDGVIIRDRMNRLKD 444 (471)
Q Consensus 425 ~~l~~~~~~~~r~~a~~l~~ 444 (471)
+. +. .-|-+..+.+.+
T Consensus 171 ~~-Eh---~lyp~~v~~~~~ 186 (200)
T COG0299 171 EQ-EH---RLYPLAVKLLAE 186 (200)
T ss_pred HH-HH---HHHHHHHHHHHh
Confidence 53 33 445554444443
No 327
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=26.19 E-value=1.2e+02 Score=25.77 Aligned_cols=27 Identities=7% Similarity=0.098 Sum_probs=21.0
Q ss_pred ccccccCc------hhHHHHHhhCCceeecccc
Q 012063 360 GFLTHCGW------NSTLESIVHGVPLIAWPLY 386 (471)
Q Consensus 360 ~~ItHgG~------~s~~eal~~GvP~l~~P~~ 386 (471)
++++|.|- +++.+|...++|+|++.-.
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 78888874 4788899999999998654
No 328
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=26.14 E-value=85 Score=24.09 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=19.5
Q ss_pred cCCCccEEEeCC---CCccHHHHHHHhCCceE
Q 012063 102 ASTHLMALVVDP---FGTDVFDVAREFYVPSY 130 (471)
Q Consensus 102 ~~~~~D~VI~D~---~~~~~~~~A~~lgIP~v 130 (471)
.+.++|+||..+ +...-.+..+..|||++
T Consensus 59 ~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 59 KENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 345999999876 33334467788899954
No 329
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=26.07 E-value=2.4e+02 Score=25.01 Aligned_cols=39 Identities=8% Similarity=0.039 Sum_probs=30.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
-+++.--|+.|=..-.+.++...+++ |+.|.|++.....
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~ 56 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEERE 56 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCH
Confidence 34556668899988888888877676 9999999976543
No 330
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=26.06 E-value=2e+02 Score=27.33 Aligned_cols=33 Identities=6% Similarity=0.256 Sum_probs=26.3
Q ss_pred hhhcCCcccccccccCchhHHHHHhhCCceeec
Q 012063 351 EVLGHPSTGGFLTHCGWNSTLESIVHGVPLIAW 383 (471)
Q Consensus 351 ~~L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 383 (471)
.++..-.-+++|++++..+..-|-..|+|.+.+
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 333333334999999999999999999999966
No 331
>PLN02939 transferase, transferring glycosyl groups
Probab=25.98 E-value=1.3e+02 Score=33.31 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.4
Q ss_pred CCcEEEEEcC---CC--ccCH-HHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 4 VKHHVACMPS---PG--MGHL-IPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 4 ~~~~i~~~~~---p~--~GH~-~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
++|||++++. |. .|-+ .-.-.|.++|++. ||+|.+++|.+.
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y~ 526 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKYD 526 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCCc
Confidence 5799999875 21 2333 3355789999765 999999998654
No 332
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=25.97 E-value=1.7e+02 Score=28.06 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=30.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIG 45 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (471)
|.=++.++.|-+--.+.||++|.+| |..|.+++-.+.
T Consensus 52 VGNltvGGtGKTP~vi~la~~l~~r-G~~~gvvSRGYg 88 (336)
T COG1663 52 VGNLTVGGTGKTPVVIWLAEALQAR-GVRVGVVSRGYG 88 (336)
T ss_pred EccEEECCCCcCHHHHHHHHHHHhc-CCeeEEEecCcC
Confidence 3456789999999999999999775 999999985443
No 333
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.91 E-value=1e+02 Score=26.44 Aligned_cols=29 Identities=7% Similarity=-0.018 Sum_probs=19.7
Q ss_pred CccEEEeCCCCcc--HHHHHHHhCCceEEEe
Q 012063 105 HLMALVVDPFGTD--VFDVAREFYVPSYLYF 133 (471)
Q Consensus 105 ~~D~VI~D~~~~~--~~~~A~~lgIP~v~~~ 133 (471)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999997654333 2245567999977653
No 334
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=25.78 E-value=2.5e+02 Score=27.45 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.0
Q ss_pred CHHhHHHHHHHHHhCCCceEEEEecC
Q 012063 281 SYDQLEELALGLELSEQQFLWVVKSP 306 (471)
Q Consensus 281 ~~~~~~~~~~al~~~~~~~~~~~~~~ 306 (471)
-+.++..++++|.+.++++...+..+
T Consensus 9 ~p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 9 FPGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred CchhHHHHHHHHHHCCCEEEEEecCC
Confidence 45668899999999999877665543
No 335
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=25.45 E-value=1.4e+02 Score=25.88 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=20.6
Q ss_pred cEEEeCCCC-ccHHHHHHHhCCceEEEecch
Q 012063 107 MALVVDPFG-TDVFDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 107 D~VI~D~~~-~~~~~~A~~lgIP~v~~~~~~ 136 (471)
.++|...+. +++..+|+++|+|.|.++|..
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 356654433 444569999999999888754
No 336
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=25.30 E-value=3.6e+02 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTI 44 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (471)
+++.--|+.|-.+=++.++..++++ |.+|.|++.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EE 132 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEE 132 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcC
Confidence 4666778999999999999999775 89999998753
No 337
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=25.12 E-value=73 Score=31.00 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.9
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 15 GMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 15 ~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
=+|++----.||+.|++++|++|++.+..
T Consensus 10 NfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 10 NFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 37999999999999999889999999854
No 338
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.00 E-value=2e+02 Score=30.04 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=21.0
Q ss_pred ccccccCc------hhHHHHHhhCCceeecc
Q 012063 360 GFLTHCGW------NSTLESIVHGVPLIAWP 384 (471)
Q Consensus 360 ~~ItHgG~------~s~~eal~~GvP~l~~P 384 (471)
++++|.|- +++.||...++|+|++.
T Consensus 79 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 79 VCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 77777774 48999999999999985
No 339
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=24.95 E-value=1.6e+02 Score=24.91 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=25.2
Q ss_pred HHHHhhcCCCccEEEeCCCCcc-------------HH--HHHHHhCCceEEEecc
Q 012063 96 VFKSLVASTHLMALVVDPFGTD-------------VF--DVAREFYVPSYLYFLT 135 (471)
Q Consensus 96 ~l~~~~~~~~~D~VI~D~~~~~-------------~~--~~A~~lgIP~v~~~~~ 135 (471)
.+.+++++.+||.++.+..++. +. .++...|||...+.|.
T Consensus 52 ~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 52 GLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 3444445559999987754332 11 3677789997777654
No 340
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=24.93 E-value=1.1e+02 Score=29.90 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=45.9
Q ss_pred ccccccccCchhHHHHHhhC-----------------CceeeccccccchhhHHHHHhhhcceee-cCCCCCCccCHHHH
Q 012063 358 TGGFLTHCGWNSTLESIVHG-----------------VPLIAWPLYAEQRLNAVILSEDLNVALR-PPEYENGLIKREEI 419 (471)
Q Consensus 358 ~~~~ItHgG~~s~~eal~~G-----------------vP~l~~P~~~DQ~~na~~~~~~~G~g~~-~~~~~~~~~~~~~l 419 (471)
.+.++|.||..+.+-|+.+. .|.+.++-.. ++-+..-..- +|+|++ +...+++.++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~-lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARI-LGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHH-TTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcce-eeeEEEEecCCcchhhhHHHh
Confidence 34889999988888776433 4566665433 4555555555 899965 34444567899999
Q ss_pred HHHHHHHhCC
Q 012063 420 AKVIKGLMHG 429 (471)
Q Consensus 420 ~~~i~~~l~~ 429 (471)
+++|++..++
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999877654
No 341
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=24.59 E-value=1.6e+02 Score=28.11 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 8 VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 8 i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
+.++-.|+.|-.+=.++++...+++ |-.|.|+.++...
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~ 95 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHAL 95 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccH
Confidence 4577778999999999999999765 9999999876433
No 342
>PRK08322 acetolactate synthase; Reviewed
Probab=24.58 E-value=2.7e+02 Score=28.86 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.2
Q ss_pred ccccccccCc------hhHHHHHhhCCceeecc
Q 012063 358 TGGFLTHCGW------NSTLESIVHGVPLIAWP 384 (471)
Q Consensus 358 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 384 (471)
.+++++|.|- +++.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3478888774 48899999999999985
No 343
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.49 E-value=1.8e+02 Score=26.80 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=40.2
Q ss_pred cCcchhhhhcCCcccccc-cccCchhHHHHHhhCCceee--cccc-ccch-hhHHHHHhhhcceeecCC
Q 012063 345 SWAPQVEVLGHPSTGGFL-THCGWNSTLESIVHGVPLIA--WPLY-AEQR-LNAVILSEDLNVALRPPE 408 (471)
Q Consensus 345 ~~~pq~~~L~~~~~~~~I-tHgG~~s~~eal~~GvP~l~--~P~~-~DQ~-~na~~~~~~~G~g~~~~~ 408 (471)
++-|..+.|+-++ .+| |---.|-..||++.|+|+-+ .|.+ .+.+ ..-..+++ +|+++....
T Consensus 234 g~NPY~~~La~Ad--yii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~e-q~~AR~f~~ 299 (329)
T COG3660 234 GYNPYIDMLAAAD--YIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVE-QKIARPFEG 299 (329)
T ss_pred CCCchHHHHhhcc--eEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHH-hhhccccCc
Confidence 5568889998888 554 55557778999999999855 3433 2222 22345666 677766553
No 344
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=6.6e+02 Score=24.38 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=69.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcc-hhHHHHH
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEED-VKAEIQI 82 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~ 82 (471)
.|.|++++-.+--||-=-|--=|..|++. |.+|.++.--...+ ...+.. +| +++++.++....... .......
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p---~e~l~~-hp-rI~ih~m~~l~~~~~~p~~~~l~ 84 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIP---LEELLN-HP-RIRIHGMPNLPFLQGGPRVLFLP 84 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCC---hHHHhc-CC-ceEEEeCCCCcccCCCchhhhhH
Confidence 46799999999999999999999999875 99999997432222 223333 34 699999876553311 1122222
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCccEEEe-CCCCccHHHHHHHh----CCceEEEe
Q 012063 83 VLAIKRSLSSVRDVFKSLVASTHLMALVV-DPFGTDVFDVAREF----YVPSYLYF 133 (471)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~~~~~D~VI~-D~~~~~~~~~A~~l----gIP~v~~~ 133 (471)
...+-..... +-.+....++|.++. .+-......++..+ |-..++=|
T Consensus 85 lKvf~Qfl~L----l~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDW 136 (444)
T KOG2941|consen 85 LKVFWQFLSL----LWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDW 136 (444)
T ss_pred HHHHHHHHHH----HHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEe
Confidence 2222222222 222222447888775 44344444444433 44544443
No 345
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.24 E-value=1.4e+02 Score=26.51 Aligned_cols=39 Identities=18% Similarity=-0.021 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
.+.+|++.+.++-.|-....=++..|.. +|++|+++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCC
Confidence 4679999999999999999999999955 69999998743
No 346
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.14 E-value=5.2e+02 Score=27.07 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=22.3
Q ss_pred ccccccccCc------hhHHHHHhhCCceeecc
Q 012063 358 TGGFLTHCGW------NSTLESIVHGVPLIAWP 384 (471)
Q Consensus 358 ~~~~ItHgG~------~s~~eal~~GvP~l~~P 384 (471)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3388888884 47889999999999995
No 347
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=24.12 E-value=1.3e+02 Score=28.20 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=24.4
Q ss_pred cCCCHHhHHHHHHHHHhCCCceEEEEecCC
Q 012063 278 GTLSYDQLEELALGLELSEQQFLWVVKSPD 307 (471)
Q Consensus 278 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 307 (471)
...+.+..+++.+++.....+.||...++.
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 344667788999999998899999988764
No 348
>PHA02754 hypothetical protein; Provisional
Probab=24.11 E-value=1.1e+02 Score=20.53 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Q 012063 415 KREEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAA 449 (471)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~ 449 (471)
+++++.++| .+ +++++.++++++.+.++
T Consensus 3 kAeEi~k~i----~e---K~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 3 KAEEIPKAI----ME---KDFKEAMRELKDILSEA 30 (67)
T ss_pred cHHHHHHHH----HH---hHHHHHHHHHHHHHhhC
Confidence 455555544 55 78999999999998764
No 349
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=23.83 E-value=4.2e+02 Score=21.95 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCCccCHHHHHHHHHHHHhCCCcEEEEEe
Q 012063 13 SPGMGHLIPHVELAKQLVLRHDISVTFLV 41 (471)
Q Consensus 13 ~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~ 41 (471)
-+.-|-..-.+.|++.|.++ |.+|.++=
T Consensus 6 ~~~~GKT~va~~L~~~l~~~-g~~V~~~k 33 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKA-GYSVGYYK 33 (166)
T ss_pred CCCccHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 46778889999999999765 99999974
No 350
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=23.83 E-value=4.7e+02 Score=22.51 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEe
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLV 41 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~ 41 (471)
|--|-+++..+.|-.+..+.+|-+-+-+ |.+|.++-
T Consensus 21 ~Gli~VYtGdGKGKTTAAlGlalRAaG~-G~rV~iiQ 56 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQ-GTPVLIVQ 56 (178)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHhcC-CCEEEEEE
Confidence 4567889999999999999999988764 99999986
No 351
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=23.76 E-value=53 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.3
Q ss_pred ccccccCc------hhHHHHHhhCCceeeccc
Q 012063 360 GFLTHCGW------NSTLESIVHGVPLIAWPL 385 (471)
Q Consensus 360 ~~ItHgG~------~s~~eal~~GvP~l~~P~ 385 (471)
++++|+|- +.+.||...++|||++.-
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 77777774 478899999999999953
No 352
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=6.8e+02 Score=24.29 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=81.8
Q ss_pred CccEEEEEeCCCcCCCHHhHHHHHHHHHhCC---------C-ceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHh
Q 012063 266 SGSVLFVSFGSGGTLSYDQLEELALGLELSE---------Q-QFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDR 335 (471)
Q Consensus 266 ~~~~i~vs~GS~~~~~~~~~~~~~~al~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~ 335 (471)
+++-++||--| ..+.+.+..+++||...+ . .++-...+. +++.+.+.+.
T Consensus 253 ~~pallvsSTs--wTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK-------------------GPlkE~Y~~~ 311 (444)
T KOG2941|consen 253 ERPALLVSSTS--WTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK-------------------GPLKEKYSQE 311 (444)
T ss_pred CCCeEEEecCC--CCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC-------------------CchhHHHHHH
Confidence 46678887433 334556777888886221 1 222222221 2344555555
Q ss_pred hcCCCee----eccCc---chhhhhcCCcccccccccCch-----hHHHHHhhCCceeeccccccchhhHHHHHhhhcc-
Q 012063 336 TKEQGLV----VPSWA---PQVEVLGHPSTGGFLTHCGWN-----STLESIVHGVPLIAWPLYAEQRLNAVILSEDLNV- 402 (471)
Q Consensus 336 ~~~~~v~----v~~~~---pq~~~L~~~~~~~~ItHgG~~-----s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~~G~- 402 (471)
+...|.. ...|. +...+|+.++.++..|-.-.| -|..-.-+|+|.+.+-+-. -.-+++ .|.
T Consensus 312 I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkc-----l~ELVk-h~eN 385 (444)
T KOG2941|consen 312 IHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKC-----LDELVK-HGEN 385 (444)
T ss_pred HHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchh-----HHHHHh-cCCC
Confidence 5444332 23564 467789999988887765544 3455566777777764322 223444 333
Q ss_pred eeecCCCCCCccCHHHHHHHHHHHhCC----Cc-hHHHHHHHHHHH
Q 012063 403 ALRPPEYENGLIKREEIAKVIKGLMHG----ED-GVIIRDRMNRLK 443 (471)
Q Consensus 403 g~~~~~~~~~~~~~~~l~~~i~~~l~~----~~-~~~~r~~a~~l~ 443 (471)
|+.. -+.+++.+.+.-++.| -+ ...+++++++-+
T Consensus 386 GlvF-------~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~ 424 (444)
T KOG2941|consen 386 GLVF-------EDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQ 424 (444)
T ss_pred ceEe-------ccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Confidence 4544 3588999999888872 11 345666666553
No 353
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=23.68 E-value=1.1e+02 Score=25.79 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.4
Q ss_pred ccccccC------chhHHHHHhhCCceeeccc
Q 012063 360 GFLTHCG------WNSTLESIVHGVPLIAWPL 385 (471)
Q Consensus 360 ~~ItHgG------~~s~~eal~~GvP~l~~P~ 385 (471)
++++|.| .+.+.+|...++|||++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 6666666 3478899999999999964
No 354
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=23.44 E-value=5.9e+02 Score=23.51 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 5 KHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 5 ~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
..+|.+.-.|+.|--+=.-.|++.|.++ |++|.+++-
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAV 65 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAV 65 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEE
Confidence 4578999999999999999999999876 999999984
No 355
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=23.37 E-value=15 Score=19.71 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=13.1
Q ss_pred CchhHHHHHhhCCceee
Q 012063 366 GWNSTLESIVHGVPLIA 382 (471)
Q Consensus 366 G~~s~~eal~~GvP~l~ 382 (471)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888765
No 356
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=23.20 E-value=1.7e+02 Score=22.27 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=20.9
Q ss_pred CCccEEEeCCCCccHH--HHHHHhCCceE
Q 012063 104 THLMALVVDPFGTDVF--DVAREFYVPSY 130 (471)
Q Consensus 104 ~~~D~VI~D~~~~~~~--~~A~~lgIP~v 130 (471)
..+|+||.|.-..+.. .+.+.+|++++
T Consensus 56 ~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 56 LDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 3899999887666665 38889999843
No 357
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=23.11 E-value=77 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=19.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
+|.++. +.|++- -.|.++..+| ||+||-++-
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~R-GHeVTAivR 32 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALKR-GHEVTAIVR 32 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHhC-CCeeEEEEe
Confidence 444443 345443 3567777676 999999984
No 358
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.90 E-value=2.7e+02 Score=26.15 Aligned_cols=28 Identities=7% Similarity=-0.177 Sum_probs=21.1
Q ss_pred CCCHHhHHHHHHHHHhCCCceEEEEecC
Q 012063 279 TLSYDQLEELALGLELSEQQFLWVVKSP 306 (471)
Q Consensus 279 ~~~~~~~~~~~~al~~~~~~~~~~~~~~ 306 (471)
......+..+.++++.++..+++-++..
T Consensus 140 ~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 140 YPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3344557889999999999988866553
No 359
>PRK00865 glutamate racemase; Provisional
Probab=22.77 E-value=3.2e+02 Score=25.11 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=55.9
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCCCCCcchhHHHHHHHHHHHhHH
Q 012063 12 PSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPVNFEEDVKAEIQIVLAIKRSLS 91 (471)
Q Consensus 12 ~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 91 (471)
..|-.| +.|.+..|... .. +-+|.++++........+.........++.+..+|....- .....-.........
T Consensus 91 ~iPvig-i~~a~~~a~~~-~~-~~~igVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv---~~ie~g~~~~~~~~~ 164 (261)
T PRK00865 91 DIPVVG-IVPAIKPAAAL-TR-NGRIGVLATPGTVKSAAYRDLIARFAPDCQVESLACPELV---PLVEAGILGGPVTLE 164 (261)
T ss_pred CCCEEe-eHHHHHHHHHh-cC-CCeEEEEECHHHhhchHHHHHHHHhCCCCEEEEecCHHHH---HHHhCCCcCCHHHHH
Confidence 567788 88888877765 33 7789999887654433455555444434565444332110 000000000011223
Q ss_pred HHHHHHHHhhcCCCccEEEeCCCCccHH--HHHHHhC
Q 012063 92 SVRDVFKSLVASTHLMALVVDPFGTDVF--DVAREFY 126 (471)
Q Consensus 92 ~l~~~l~~~~~~~~~D~VI~D~~~~~~~--~~A~~lg 126 (471)
.+.+.++.+ .+.+.|.||.-...+... .+.+.++
T Consensus 165 ~l~~~l~~l-~~~g~d~iILGCTh~p~l~~~i~~~~~ 200 (261)
T PRK00865 165 VLREYLAPL-LAAGIDTLVLGCTHYPLLKPEIQQVLG 200 (261)
T ss_pred HHHHHHHHH-hcCCCCEEEECCcCHHHHHHHHHHHcC
Confidence 344444444 334899999775444433 2455555
No 360
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=22.36 E-value=3.3e+02 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=30.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
-+++.-.|+.|-..=.++++.+-+++ |-.|.|++.....
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~ 61 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHP 61 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCH
Confidence 45777779999999888888776565 9999999976543
No 361
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.33 E-value=1.2e+02 Score=29.83 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhhcCCCH
Q 012063 416 REEIAKVIKGLMHGEDGVIIRDRMNRLKDAAAAAVSDGGSS 456 (471)
Q Consensus 416 ~~~l~~~i~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~g~~ 456 (471)
+|.|.+.+.+--+.|-.+++|++|++|++.=.++.++||+.
T Consensus 140 EEKi~e~v~~nke~ea~q~mkrKaKElqr~r~ea~rrgg~~ 180 (512)
T KOG2635|consen 140 EEKIHELVMRNKEREAKQEMKRKAKELQRARKEAERRGGSL 180 (512)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 57777777766555446789999999988888887777543
No 362
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=22.33 E-value=4.7e+02 Score=21.96 Aligned_cols=16 Identities=0% Similarity=0.243 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 012063 433 VIIRDRMNRLKDAAAA 448 (471)
Q Consensus 433 ~~~r~~a~~l~~~~~~ 448 (471)
++++++.+..++...+
T Consensus 131 ~~l~~kl~~~r~~~~~ 146 (156)
T TIGR01162 131 PELAEKLKEYRENQKE 146 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666665554
No 363
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.32 E-value=3.1e+02 Score=26.48 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=41.5
Q ss_pred cCcchhhhhcCCccccccc------ccCchhHHHHHhhCCceee-ccccccchhhHHHHHhhhcceeec
Q 012063 345 SWAPQVEVLGHPSTGGFLT------HCGWNSTLESIVHGVPLIA-WPLYAEQRLNAVILSEDLNVALRP 406 (471)
Q Consensus 345 ~~~pq~~~L~~~~~~~~It------HgG~~s~~eal~~GvP~l~-~P~~~DQ~~na~~~~~~~G~g~~~ 406 (471)
.|....+++...++.++.+ +-+.--+.+||.+|+.++| =|+..++-.-..++.++.|+=+.+
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4667788888888777764 3445678899999999999 788754444444444434544443
No 364
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.26 E-value=1.8e+02 Score=25.42 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=25.5
Q ss_pred CCccEEEeCCCCccHHHHHHHhCCceEEEe
Q 012063 104 THLMALVVDPFGTDVFDVAREFYVPSYLYF 133 (471)
Q Consensus 104 ~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~ 133 (471)
.++.+||+|-.-..++.-|+..|||.+.+.
T Consensus 28 a~i~~Visd~~~A~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 28 AEIVAVISDKADAYALERAAKAGIPTVVLD 57 (200)
T ss_pred cEEEEEEeCCCCCHHHHHHHHcCCCEEEec
Confidence 368899999988888899999999987654
No 365
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.26 E-value=4.2e+02 Score=25.45 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=35.0
Q ss_pred CcE-EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 012063 5 KHH-VACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPTIGPP 47 (471)
Q Consensus 5 ~~~-i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (471)
++. |+|+-.-+.|-.+-.-.||..|.+. |+.|.+++...+.+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRA 180 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRA 180 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHH
Confidence 354 5777889999999999999999775 99999999875543
No 366
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=22.15 E-value=60 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=23.1
Q ss_pred CccEEE-eCCCCccH-HHHHHHhCCceEEEecch
Q 012063 105 HLMALV-VDPFGTDV-FDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 105 ~~D~VI-~D~~~~~~-~~~A~~lgIP~v~~~~~~ 136 (471)
.||+|| .|+..--. ..=|.++|||.+.+.-+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 689877 67754333 357888999999887543
No 367
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=22.11 E-value=62 Score=29.52 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.2
Q ss_pred ccccccCchhHHHHHhh----CCceeecc
Q 012063 360 GFLTHCGWNSTLESIVH----GVPLIAWP 384 (471)
Q Consensus 360 ~~ItHgG~~s~~eal~~----GvP~l~~P 384 (471)
++|+-||-||++.|+.. ++|++.+-
T Consensus 28 lvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 28 VIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 99999999999988664 67888774
No 368
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.07 E-value=1.1e+02 Score=26.10 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEecc
Q 012063 90 LSSVRDVFKSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYFLT 135 (471)
Q Consensus 90 ~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 135 (471)
...+...+.++ ...++|+||.+.. ...+|+++|+|++.+.++
T Consensus 111 ~~e~~~~i~~~-~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 111 EEEIEAAIKQA-KAEGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHHHHH-HHTT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred HHHHHHHHHHH-HHcCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 34455555554 3348999999963 467899999998877664
No 369
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=21.99 E-value=5.3e+02 Score=22.38 Aligned_cols=48 Identities=27% Similarity=0.215 Sum_probs=27.4
Q ss_pred ccCH-HHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhhccCCCCeEEEEcCCC
Q 012063 16 MGHL-IPHVELAKQLVLRHDISVTFLVPTIGPPSKAITSVLQGLPEHINHVLLPPV 70 (471)
Q Consensus 16 ~GH~-~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 70 (471)
+|=+ +-.-.|+..|+++ ||+||+.+.....+.. ...-.+++...+|..
T Consensus 16 YGGfET~ve~L~~~l~~~-g~~v~Vyc~~~~~~~~------~~~y~gv~l~~i~~~ 64 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSK-GIDVTVYCRSDYYPYK------EFEYNGVRLVYIPAP 64 (185)
T ss_pred cCcHHHHHHHHHHHHhcC-CceEEEEEccCCCCCC------CcccCCeEEEEeCCC
Confidence 3443 3344678888765 9999999864333210 111136677766543
No 370
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=21.96 E-value=6.5e+02 Score=23.41 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCC
Q 012063 23 VELAKQLVLRHDISVTFLVPTIGP 46 (471)
Q Consensus 23 l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (471)
.++|..++++ |++|.++......
T Consensus 3 ~a~a~~~a~~-g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQ-GKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHC-CCeEEEEECCCCC
Confidence 4688889775 9999999875443
No 371
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.89 E-value=1.9e+02 Score=25.41 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=30.2
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 5 KHHVACMPS--PGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 5 ~~~i~~~~~--p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
+++++.+.. ++.|=..=...||..|++.+|++|.++-..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456555543 788999999999999986359999998654
No 372
>PRK04296 thymidine kinase; Provisional
Probab=21.64 E-value=5.3e+02 Score=22.23 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=27.6
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 8 VACMPS-PGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 8 i~~~~~-p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
|.++.. ++.|=..-++.++.++..+ |.+|.++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEec
Confidence 445554 5999999999999999765 999998864
No 373
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=21.52 E-value=2.7e+02 Score=18.85 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 012063 416 REEIAKVIKGLMH-GEDGVIIRDRMNRLKDAAAAAVSDGGSSTKTLSQ 462 (471)
Q Consensus 416 ~~~l~~~i~~~l~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 462 (471)
++.|.+++++-++ ++++..+|--.+.++.-+-+ +|..++.+.+
T Consensus 7 Pe~L~~~m~~fie~hP~WDQ~Rl~~aALa~FL~Q----nG~~~r~~~r 50 (57)
T PF10929_consen 7 PEDLHQAMKDFIETHPNWDQYRLFQAALAGFLLQ----NGCQDRAVTR 50 (57)
T ss_pred cHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCchhHHHHH
Confidence 6889999999886 44588999888888888776 6777776654
No 374
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=21.48 E-value=88 Score=28.09 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 17 GHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 17 GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
-|+..|-+.|.+|.++ |++|+++...
T Consensus 46 l~~saMRhfa~~L~~~-G~~V~Y~~~~ 71 (224)
T PF04244_consen 46 LFFSAMRHFADELRAK-GFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHHT-T--EEEE-TT
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 3678899999999776 9999999744
No 375
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=21.36 E-value=2.9e+02 Score=28.75 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=21.8
Q ss_pred cccccccCc------hhHHHHHhhCCceeecc
Q 012063 359 GGFLTHCGW------NSTLESIVHGVPLIAWP 384 (471)
Q Consensus 359 ~~~ItHgG~------~s~~eal~~GvP~l~~P 384 (471)
+++++|.|- ++++||...++|+|++-
T Consensus 66 gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 66 GVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 378888874 48899999999999984
No 376
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=21.31 E-value=5e+02 Score=27.12 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=21.8
Q ss_pred cccccccCch------hHHHHHhhCCceeecc
Q 012063 359 GGFLTHCGWN------STLESIVHGVPLIAWP 384 (471)
Q Consensus 359 ~~~ItHgG~~------s~~eal~~GvP~l~~P 384 (471)
+++++|.|-| .+.+|...++|+|++.
T Consensus 66 gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 66 SMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred EEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 3788888854 7889999999999995
No 377
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=21.11 E-value=5.1e+02 Score=21.86 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=21.9
Q ss_pred EcCCCccCHHHHH-HHHHHHHhCCCcEEEEEeCC
Q 012063 11 MPSPGMGHLIPHV-ELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 11 ~~~p~~GH~~P~l-~La~~L~~r~Gh~Vt~~~~~ 43 (471)
+.+...+.+..++ .+|.+|..+ |++|.=++..
T Consensus 4 v~~~~~~~~d~lL~~~a~~L~~~-G~rv~G~vQ~ 36 (159)
T PF10649_consen 4 VVYDDGGDIDALLAAFAARLRAR-GVRVAGLVQR 36 (159)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhC-CCeEEEEecc
Confidence 3344455666554 689999775 9999877743
No 378
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=21.07 E-value=3.5e+02 Score=25.27 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCcEEEEEeC
Q 012063 23 VELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 23 l~La~~L~~r~Gh~Vt~~~~ 42 (471)
-+|..+|.+. ||+||+++-
T Consensus 12 ~~L~~~L~~~-gh~v~iltR 30 (297)
T COG1090 12 RALTARLRKG-GHQVTILTR 30 (297)
T ss_pred HHHHHHHHhC-CCeEEEEEc
Confidence 4678888664 999999994
No 379
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=21.02 E-value=61 Score=28.39 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=23.0
Q ss_pred CccEEE-eCCCCcc-HHHHHHHhCCceEEEecch
Q 012063 105 HLMALV-VDPFGTD-VFDVAREFYVPSYLYFLTN 136 (471)
Q Consensus 105 ~~D~VI-~D~~~~~-~~~~A~~lgIP~v~~~~~~ 136 (471)
.||+|| .|+..-- +..=|.++|||.+.+.-+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 688876 6875533 3458889999999876543
No 380
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.86 E-value=7.9e+02 Score=23.99 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=25.5
Q ss_pred CcEEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 5 KHHVACMP-SPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 5 ~~~i~~~~-~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
.++|+++- .+..|. .||+.|.++ ||+|+++..
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~-G~~V~~~d~ 130 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLS-GYQVRILEQ 130 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHC-CCeEEEeCC
Confidence 46889887 788885 578899765 999999874
No 381
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=20.82 E-value=1.2e+02 Score=31.23 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=23.8
Q ss_pred HhhcCCCccEEEeCCCCccHHHHHHHhCCceEEEe
Q 012063 99 SLVASTHLMALVVDPFGTDVFDVAREFYVPSYLYF 133 (471)
Q Consensus 99 ~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~ 133 (471)
+++++.+||+||.+. +...+|+++|||++..+
T Consensus 368 ~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 368 DMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 334456899999986 46667899999986543
No 382
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.76 E-value=1.8e+02 Score=26.62 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=22.0
Q ss_pred hhcCCCccEEEeC-CC---CccHHHHHHHhCCceEEE
Q 012063 100 LVASTHLMALVVD-PF---GTDVFDVAREFYVPSYLY 132 (471)
Q Consensus 100 ~~~~~~~D~VI~D-~~---~~~~~~~A~~lgIP~v~~ 132 (471)
++++.+.|+||+= .- +..-..+|+.+|||+++.
T Consensus 189 l~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 189 LFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 3445599999962 21 122246999999998764
No 383
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=20.67 E-value=1.3e+02 Score=26.75 Aligned_cols=34 Identities=29% Similarity=0.211 Sum_probs=29.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEe
Q 012063 7 HVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLV 41 (471)
Q Consensus 7 ~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~ 41 (471)
=|.+..+|+.|-..-.-.||++|.++ +|+|...+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~ 36 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLE 36 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhccccc
Confidence 46677789999999999999999776 99988776
No 384
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=20.67 E-value=2.4e+02 Score=29.36 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=21.1
Q ss_pred ccccccC------chhHHHHHhhCCceeecc
Q 012063 360 GFLTHCG------WNSTLESIVHGVPLIAWP 384 (471)
Q Consensus 360 ~~ItHgG------~~s~~eal~~GvP~l~~P 384 (471)
++++|.| .+.+.||-..++|||++.
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 6777777 458999999999999995
No 385
>PRK11914 diacylglycerol kinase; Reviewed
Probab=20.65 E-value=1.9e+02 Score=27.20 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=22.8
Q ss_pred ccccccCchhHHHHH----hhCCceeecccc
Q 012063 360 GFLTHCGWNSTLESI----VHGVPLIAWPLY 386 (471)
Q Consensus 360 ~~ItHgG~~s~~eal----~~GvP~l~~P~~ 386 (471)
++|--||-||+.|++ ..++|+-++|..
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 888999999999987 347899999964
No 386
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.48 E-value=5.5e+02 Score=23.60 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHhhCCc---eeeccccccchhhHHHHHhhhcceeecCCCCCCc-cCHHHHHHHH
Q 012063 370 TLESIVHGVP---LIAWPLYAEQRLNAVILSEDLNVALRPPEYENGL-IKREEIAKVI 423 (471)
Q Consensus 370 ~~eal~~GvP---~l~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~-~~~~~l~~~i 423 (471)
+..|+..|.| +|.+=-.+.+..|-+.+++ +|+...+.++.++. -+.+.+..+.
T Consensus 164 l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~-~~i~~lVtK~SG~~Gg~~eKi~AA~ 220 (256)
T TIGR00715 164 LAQALKLGFPSDRIIAMRGPFSEELEKALLRE-YRIDAVVTKASGEQGGELEKVKAAE 220 (256)
T ss_pred hHHHHHcCCChhcEEEEeCCCCHHHHHHHHHH-cCCCEEEEcCCCCccchHHHHHHHH
Confidence 3445566666 3443222346778888888 99998888775432 4556665554
No 387
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.43 E-value=1.4e+02 Score=29.78 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHhhcCCCccEEEeCCCCccHHHHHHHhCCceEEE
Q 012063 98 KSLVASTHLMALVVDPFGTDVFDVAREFYVPSYLY 132 (471)
Q Consensus 98 ~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 132 (471)
++++++.+||++|.+.. ...+|+++|||++..
T Consensus 365 ~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 365 ESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 33445568999999874 567899999997653
No 388
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=20.39 E-value=2e+02 Score=23.46 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=27.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
+-|++ .++..--+.|..-++...++. |++|+++.+
T Consensus 5 ~~IIl-~SG~~dk~~~a~iias~A~A~-G~EV~VF~T 39 (137)
T COG2210 5 LGIIL-ASGTLDKAYAALIIASGAAAM-GYEVTVFFT 39 (137)
T ss_pred EEEEE-eCCCHHHHHHHHHHHHHHHHc-CCeEEEEEe
Confidence 44444 447788889999999999876 999999986
No 389
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=20.30 E-value=1.7e+02 Score=25.86 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 012063 4 VKHHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVPT 43 (471)
Q Consensus 4 ~~~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (471)
.+++|.+=..|+-|-..-|+.=|.+|.++ |.+|.+..-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEec
Confidence 47899999999999999999999999876 9999987643
No 390
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.25 E-value=1.2e+02 Score=27.71 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCccEEE--eCC----CCccHHHHHHHhCCceEEE
Q 012063 94 RDVFKSLVASTHLMALV--VDP----FGTDVFDVAREFYVPSYLY 132 (471)
Q Consensus 94 ~~~l~~~~~~~~~D~VI--~D~----~~~~~~~~A~~lgIP~v~~ 132 (471)
.+-+.+++++.+.|+|| +++ .+--+..+|+..|||++.|
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
No 391
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=20.14 E-value=1.7e+02 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012063 6 HHVACMPSPGMGHLIPHVELAKQLVLRHDISVTFLVP 42 (471)
Q Consensus 6 ~~i~~~~~p~~GH~~P~l~La~~L~~r~Gh~Vt~~~~ 42 (471)
|.|+++.=++-|-.+=.+.||..|+++ |++|.++=.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~-g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKL-GKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 467777668889999999999999875 999998853
No 392
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=20.02 E-value=7.3e+02 Score=23.24 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCCCccccCCCCCCCCCCCChhhHHhhcCCCeeeccCcchhhhhcCCcccccccccC
Q 012063 287 ELALGLELSEQQFLWVVKSPDDKSASGSFFDVHSKTDPFGFLPTGFLDRTKEQGLVVPSWAPQVEVLGHPSTGGFLTHCG 366 (471)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~~pq~~~L~~~~~~~~ItHgG 366 (471)
++++.|+..+.++++..+... -+|+.+.+..+.+ -+-=||+ +.=-+.|
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~-------------------il~~~~l~~~~~~-----------iiNiHpS--LLP~~rG 203 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYMQ-------------------VLSPELCRKLAGR-----------AINIHHS--FLPGFKG 203 (286)
T ss_pred HHHHHHHHhCcCEEEEeChhh-------------------hCCHHHHhhccCC-----------eEEeccc--cCCCCCC
Confidence 456666666667777665542 2666665544332 2223555 5556678
Q ss_pred chhHHHHHhhCCceeeccccc--cchhhHHHHHhhhcceeecCCCCCCccCHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 012063 367 WNSTLESIVHGVPLIAWPLYA--EQRLNAVILSEDLNVALRPPEYENGLIKREEIAKVIKGLMHGEDGVIIRDRMNRLK 443 (471)
Q Consensus 367 ~~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~r~~a~~l~ 443 (471)
.+.+..|+..|+..-++-... +..+-+.-+.+ ..+.+... -|.++|.+.+.++ +. +-|-+..+.+.
T Consensus 204 ~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q---~~v~I~~~----dt~~~L~~r~~~~-E~---~~~~~ai~~~~ 271 (286)
T PRK13011 204 AKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQ---DVERVDHA----YSPEDLVAKGRDV-EC---LTLARAVKAHI 271 (286)
T ss_pred CcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE---EEEEcCCC----CCHHHHHHHHHHH-HH---HHHHHHHHHHH
Confidence 999999999999998776542 22222222222 22344444 4899999988764 33 45655555444
Done!