Query 012064
Match_columns 471
No_of_seqs 645 out of 2375
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 08:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.6E-59 5.6E-64 385.3 28.8 321 3-413 120-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 6.2E-54 1.4E-58 353.6 25.5 312 52-435 106-460 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2E-49 4.4E-54 331.1 22.9 287 56-413 170-458 (459)
4 KOG0315 G-protein beta subunit 100.0 2.8E-46 6.1E-51 291.2 29.7 295 74-434 11-308 (311)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-48 9.8E-53 323.0 20.8 276 2-371 179-458 (459)
6 KOG0286 G-protein beta subunit 100.0 9.2E-46 2E-50 295.0 32.2 297 48-413 42-343 (343)
7 KOG0315 G-protein beta subunit 100.0 1.9E-44 4.2E-49 280.9 31.1 297 10-394 10-309 (311)
8 KOG0319 WD40-repeat-containing 100.0 1.6E-44 3.4E-49 322.1 25.3 359 4-439 111-602 (775)
9 KOG0318 WD40 repeat stress pro 100.0 5.5E-42 1.2E-46 294.4 38.1 405 3-439 64-543 (603)
10 KOG0279 G protein beta subunit 100.0 8.7E-42 1.9E-46 270.6 30.3 286 9-373 27-313 (315)
11 KOG0265 U5 snRNP-specific prot 100.0 2.6E-42 5.7E-47 276.3 27.5 295 53-413 39-336 (338)
12 KOG0279 G protein beta subunit 100.0 4.7E-41 1E-45 266.5 30.7 291 52-415 6-313 (315)
13 KOG0286 G-protein beta subunit 100.0 2.7E-41 5.9E-46 269.5 28.4 278 3-371 60-343 (343)
14 KOG0282 mRNA splicing factor [ 100.0 4.1E-43 8.9E-48 298.5 18.7 296 51-413 204-503 (503)
15 KOG0319 WD40-repeat-containing 100.0 1.6E-41 3.4E-46 303.0 28.1 394 1-434 65-555 (775)
16 KOG0293 WD40 repeat-containing 100.0 8.1E-42 1.8E-46 284.8 24.5 300 49-417 212-515 (519)
17 KOG0318 WD40 repeat stress pro 100.0 1.1E-39 2.3E-44 280.4 36.3 340 2-419 194-564 (603)
18 KOG0295 WD40 repeat-containing 100.0 1.2E-41 2.5E-46 279.5 22.5 292 2-414 112-405 (406)
19 KOG0296 Angio-associated migra 100.0 2.3E-40 5.1E-45 272.0 30.0 325 4-415 70-398 (399)
20 KOG0291 WD40-repeat-containing 100.0 8.8E-40 1.9E-44 292.4 35.1 325 2-419 269-616 (893)
21 KOG0285 Pleiotropic regulator 100.0 7.5E-41 1.6E-45 274.2 25.8 297 46-416 136-440 (460)
22 KOG0273 Beta-transducin family 100.0 4.7E-40 1E-44 278.9 29.7 323 4-415 184-523 (524)
23 KOG0645 WD40 repeat protein [G 100.0 1.2E-38 2.6E-43 251.7 31.5 294 51-415 4-311 (312)
24 KOG0306 WD40-repeat-containing 100.0 9.4E-40 2E-44 292.1 28.2 375 4-435 71-643 (888)
25 KOG0291 WD40-repeat-containing 100.0 5.3E-38 1.1E-42 281.1 35.5 372 3-458 101-609 (893)
26 KOG0316 Conserved WD40 repeat- 100.0 1.4E-38 3.1E-43 246.3 26.9 284 54-413 10-297 (307)
27 KOG0273 Beta-transducin family 100.0 1.8E-38 3.9E-43 269.2 28.9 277 1-373 238-523 (524)
28 KOG0284 Polyadenylation factor 100.0 4.3E-40 9.4E-45 274.1 18.2 282 61-415 96-380 (464)
29 KOG0284 Polyadenylation factor 100.0 7.4E-40 1.6E-44 272.8 17.4 278 2-372 100-379 (464)
30 cd00200 WD40 WD40 domain, foun 100.0 3E-37 6.4E-42 274.4 34.7 286 55-413 3-289 (289)
31 KOG0266 WD40 repeat-containing 100.0 1.4E-37 3E-42 288.4 32.0 297 52-415 149-454 (456)
32 PLN00181 protein SPA1-RELATED; 100.0 4.8E-37 1E-41 306.4 37.7 292 57-414 479-792 (793)
33 KOG0263 Transcription initiati 100.0 8E-39 1.7E-43 288.5 21.4 280 55-418 372-652 (707)
34 KOG0285 Pleiotropic regulator 100.0 4.8E-38 1E-42 257.8 23.8 285 2-373 155-439 (460)
35 KOG0263 Transcription initiati 100.0 1.1E-37 2.3E-42 281.3 26.0 260 1-292 381-651 (707)
36 KOG0645 WD40 repeat protein [G 100.0 3.4E-36 7.3E-41 238.0 30.4 282 4-373 20-311 (312)
37 KOG0275 Conserved WD40 repeat- 100.0 9.9E-39 2.1E-43 258.7 16.2 291 2-413 217-507 (508)
38 KOG0281 Beta-TrCP (transducin 100.0 2.4E-38 5.1E-43 258.7 14.0 266 9-419 206-481 (499)
39 KOG0295 WD40 repeat-containing 100.0 4.8E-37 1E-41 252.4 21.1 286 47-431 94-381 (406)
40 KOG0276 Vesicle coat complex C 100.0 1.8E-36 3.8E-41 265.8 25.7 295 52-419 4-302 (794)
41 KOG0292 Vesicle coat complex C 100.0 1.4E-36 2.9E-41 276.6 25.4 309 2-416 13-322 (1202)
42 KOG0266 WD40 repeat-containing 100.0 4.4E-36 9.5E-41 278.5 29.3 282 3-373 164-454 (456)
43 KOG0278 Serine/threonine kinas 100.0 2.3E-37 5E-42 241.7 17.4 290 55-420 8-302 (334)
44 KOG0276 Vesicle coat complex C 100.0 3.9E-35 8.5E-40 257.4 33.0 265 2-295 17-303 (794)
45 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-34 5.9E-39 232.7 32.1 298 51-418 4-306 (311)
46 KOG0643 Translation initiation 100.0 7.3E-36 1.6E-40 235.5 22.1 287 56-416 5-318 (327)
47 KOG0296 Angio-associated migra 100.0 1E-35 2.3E-40 244.7 23.8 320 53-436 56-378 (399)
48 KOG0282 mRNA splicing factor [ 100.0 3.4E-36 7.5E-41 256.4 20.1 277 4-371 220-503 (503)
49 cd00200 WD40 WD40 domain, foun 100.0 2.4E-34 5.1E-39 255.7 32.4 276 2-371 13-289 (289)
50 KOG0265 U5 snRNP-specific prot 100.0 4.7E-35 1E-39 234.8 24.3 279 4-371 53-336 (338)
51 KOG0293 WD40 repeat-containing 100.0 3E-35 6.5E-40 245.7 22.6 279 4-374 230-514 (519)
52 KOG0313 Microtubule binding pr 100.0 1.2E-34 2.6E-39 239.7 25.5 272 10-372 115-417 (423)
53 KOG1407 WD40 repeat protein [F 100.0 4.5E-34 9.7E-39 224.7 26.6 287 55-415 14-311 (313)
54 KOG0306 WD40-repeat-containing 100.0 7.3E-34 1.6E-38 254.6 29.8 319 17-416 341-665 (888)
55 KOG0316 Conserved WD40 repeat- 100.0 3.1E-34 6.6E-39 222.3 23.4 235 3-292 22-259 (307)
56 KOG0772 Uncharacterized conser 100.0 6.3E-34 1.4E-38 244.4 24.8 306 52-415 158-488 (641)
57 KOG1334 WD40 repeat protein [G 100.0 1.7E-35 3.7E-40 252.4 15.1 363 36-430 117-481 (559)
58 KOG0278 Serine/threonine kinas 100.0 3.5E-35 7.6E-40 229.5 14.7 275 7-378 26-302 (334)
59 KOG0288 WD40 repeat protein Ti 100.0 2.9E-35 6.2E-40 245.9 14.9 289 52-413 166-459 (459)
60 KOG0268 Sof1-like rRNA process 100.0 5.5E-35 1.2E-39 240.3 15.8 294 52-423 57-353 (433)
61 KOG0283 WD40 repeat-containing 100.0 4.1E-34 8.9E-39 260.4 22.9 259 50-373 255-576 (712)
62 PLN00181 protein SPA1-RELATED; 100.0 1.1E-32 2.4E-37 275.1 35.2 303 2-372 487-792 (793)
63 KOG0281 Beta-TrCP (transducin 100.0 3.4E-35 7.4E-40 240.3 12.7 237 103-420 196-433 (499)
64 KOG0643 Translation initiation 100.0 8.3E-33 1.8E-37 218.4 23.7 292 1-374 13-318 (327)
65 KOG0313 Microtubule binding pr 100.0 1.1E-32 2.4E-37 228.1 25.2 293 59-415 103-418 (423)
66 KOG0310 Conserved WD40 repeat- 100.0 9.9E-33 2.2E-37 235.8 25.2 285 60-416 25-310 (487)
67 KOG0277 Peroxisomal targeting 100.0 7E-33 1.5E-37 217.2 22.1 283 65-414 12-308 (311)
68 KOG0277 Peroxisomal targeting 100.0 1.9E-32 4.2E-37 214.7 22.9 269 18-372 36-308 (311)
69 KOG0268 Sof1-like rRNA process 100.0 1.9E-33 4.2E-38 231.2 17.4 278 4-379 72-351 (433)
70 KOG0640 mRNA cleavage stimulat 100.0 1.2E-32 2.6E-37 222.1 21.6 297 55-415 106-426 (430)
71 KOG0292 Vesicle coat complex C 100.0 1.8E-31 3.9E-36 243.4 31.1 310 2-416 55-398 (1202)
72 KOG1407 WD40 repeat protein [F 100.0 1.3E-32 2.9E-37 216.5 20.5 265 101-436 17-282 (313)
73 KOG0647 mRNA export protein (c 100.0 2E-31 4.4E-36 214.2 26.0 276 59-403 25-311 (347)
74 KOG0305 Anaphase promoting com 100.0 3.4E-31 7.3E-36 235.3 28.5 271 10-375 188-463 (484)
75 KOG0973 Histone transcription 100.0 1.1E-31 2.3E-36 251.1 26.6 299 59-422 11-362 (942)
76 KOG0300 WD40 repeat-containing 100.0 2.6E-31 5.6E-36 215.2 21.9 309 38-418 125-479 (481)
77 KOG0289 mRNA splicing factor [ 100.0 8.9E-31 1.9E-35 220.5 25.1 277 7-372 228-505 (506)
78 KOG0289 mRNA splicing factor [ 100.0 1.9E-30 4.1E-35 218.5 27.0 283 62-414 220-505 (506)
79 KOG0283 WD40 repeat-containing 100.0 2.4E-31 5.3E-36 242.4 22.9 254 102-418 265-579 (712)
80 KOG1539 WD repeat protein [Gen 100.0 3.4E-30 7.3E-35 233.9 29.5 353 11-434 173-625 (910)
81 KOG0305 Anaphase promoting com 100.0 2.7E-30 5.7E-35 229.6 27.9 274 66-417 182-463 (484)
82 KOG1036 Mitotic spindle checkp 100.0 5.1E-30 1.1E-34 207.0 26.8 275 60-405 12-294 (323)
83 KOG0294 WD40 repeat-containing 100.0 1.1E-29 2.5E-34 205.4 27.8 297 12-393 3-305 (362)
84 KOG0640 mRNA cleavage stimulat 100.0 2.5E-31 5.3E-36 214.5 18.1 306 3-373 117-426 (430)
85 KOG0310 Conserved WD40 repeat- 100.0 1.1E-30 2.3E-35 223.4 22.8 279 1-374 29-310 (487)
86 KOG0274 Cdc4 and related F-box 100.0 5.9E-30 1.3E-34 236.4 29.4 279 60-420 207-487 (537)
87 KOG1539 WD repeat protein [Gen 100.0 1.3E-29 2.7E-34 230.2 30.5 323 4-416 208-649 (910)
88 KOG1063 RNA polymerase II elon 100.0 3.4E-29 7.3E-34 222.9 32.5 357 9-417 205-650 (764)
89 KOG1408 WD40 repeat protein [F 100.0 1.5E-30 3.2E-35 232.3 23.9 389 1-435 81-556 (1080)
90 KOG0274 Cdc4 and related F-box 100.0 8.5E-30 1.8E-34 235.3 29.6 274 10-385 218-494 (537)
91 PTZ00421 coronin; Provisional 100.0 1.8E-29 3.9E-34 233.1 31.7 272 60-397 19-315 (493)
92 KOG0299 U3 snoRNP-associated p 100.0 3E-30 6.5E-35 219.0 23.3 266 2-292 146-412 (479)
93 PTZ00421 coronin; Provisional 100.0 8.4E-29 1.8E-33 228.7 33.7 252 4-292 26-292 (493)
94 KOG0288 WD40 repeat protein Ti 100.0 2.4E-31 5.1E-36 222.6 13.4 279 2-370 179-458 (459)
95 PTZ00420 coronin; Provisional 100.0 1.8E-28 4E-33 227.3 32.7 251 79-398 50-319 (568)
96 KOG2048 WD40 repeat protein [G 100.0 6.8E-28 1.5E-32 214.3 34.7 249 1-293 28-278 (691)
97 KOG1310 WD40 repeat protein [G 100.0 1.2E-29 2.7E-34 219.9 23.0 252 43-295 32-308 (758)
98 KOG0973 Histone transcription 100.0 1.4E-29 3E-34 237.0 24.9 296 3-374 18-356 (942)
99 KOG0294 WD40 repeat-containing 100.0 7.8E-29 1.7E-33 200.6 25.7 265 76-417 4-283 (362)
100 KOG1408 WD40 repeat protein [F 100.0 5.1E-29 1.1E-33 222.6 26.6 331 5-416 331-714 (1080)
101 KOG1332 Vesicle coat complex C 100.0 1.2E-29 2.6E-34 198.0 19.4 251 2-291 15-287 (299)
102 KOG0641 WD40 repeat protein [G 100.0 1.4E-27 3.1E-32 184.4 30.5 305 1-373 35-349 (350)
103 KOG0772 Uncharacterized conser 100.0 1.6E-29 3.5E-34 217.5 21.9 288 3-371 172-485 (641)
104 KOG0299 U3 snoRNP-associated p 100.0 9.9E-29 2.2E-33 209.8 25.1 299 54-414 135-455 (479)
105 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-27 2.5E-32 194.4 30.0 281 1-373 17-303 (311)
106 KOG0647 mRNA export protein (c 100.0 1.3E-28 2.8E-33 198.1 24.1 276 2-361 31-311 (347)
107 KOG0308 Conserved WD40 repeat- 100.0 1.7E-29 3.7E-34 223.2 20.5 241 7-292 34-287 (735)
108 KOG0275 Conserved WD40 repeat- 100.0 1.1E-29 2.5E-34 206.3 17.8 265 59-433 211-486 (508)
109 PTZ00420 coronin; Provisional 100.0 8.9E-28 1.9E-32 222.7 32.4 212 54-292 67-295 (568)
110 KOG2096 WD40 repeat protein [G 100.0 6.4E-28 1.4E-32 195.6 25.9 305 55-415 80-402 (420)
111 KOG0641 WD40 repeat protein [G 100.0 1.8E-26 3.9E-31 178.4 32.5 301 50-415 22-349 (350)
112 KOG0301 Phospholipase A2-activ 100.0 6.4E-28 1.4E-32 214.9 27.3 285 51-417 4-290 (745)
113 KOG0264 Nucleosome remodeling 100.0 4.8E-28 1E-32 205.7 25.3 270 51-373 115-404 (422)
114 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.4E-26 3E-31 207.3 34.3 293 10-395 1-300 (300)
115 KOG2048 WD40 repeat protein [G 100.0 1.2E-26 2.6E-31 206.4 32.8 378 2-417 73-550 (691)
116 KOG4283 Transcription-coupled 100.0 1.6E-27 3.4E-32 191.3 24.5 308 57-415 39-365 (397)
117 KOG0300 WD40 repeat-containing 100.0 5.5E-28 1.2E-32 196.0 21.4 277 7-374 157-477 (481)
118 KOG0639 Transducin-like enhanc 100.0 1.8E-28 3.9E-33 210.4 19.3 288 52-414 411-703 (705)
119 KOG2055 WD40 repeat protein [G 100.0 2.9E-27 6.3E-32 201.0 25.0 290 61-415 213-512 (514)
120 KOG2106 Uncharacterized conser 100.0 5.6E-27 1.2E-31 201.4 26.9 330 3-414 251-625 (626)
121 KOG0321 WD40 repeat-containing 100.0 2.2E-27 4.7E-32 209.6 24.8 313 60-418 46-394 (720)
122 KOG1273 WD40 repeat protein [G 100.0 2.6E-27 5.7E-32 191.8 22.4 298 64-419 26-326 (405)
123 KOG0308 Conserved WD40 repeat- 100.0 3.1E-28 6.7E-33 215.4 18.6 296 60-417 20-329 (735)
124 KOG2055 WD40 repeat protein [G 100.0 5.4E-27 1.2E-31 199.4 25.0 291 1-373 216-512 (514)
125 KOG0264 Nucleosome remodeling 100.0 3.7E-27 8E-32 200.3 23.9 258 101-416 121-405 (422)
126 KOG2106 Uncharacterized conser 100.0 8.9E-26 1.9E-30 194.1 32.6 312 4-415 206-521 (626)
127 KOG1063 RNA polymerase II elon 100.0 7.4E-27 1.6E-31 208.1 25.9 368 8-419 157-606 (764)
128 KOG1332 Vesicle coat complex C 100.0 1.6E-27 3.6E-32 186.1 18.8 260 97-417 4-288 (299)
129 KOG1274 WD40 repeat protein [G 100.0 2.8E-26 6E-31 211.0 29.8 286 58-412 10-297 (933)
130 KOG0639 Transducin-like enhanc 100.0 6.7E-28 1.5E-32 207.0 17.5 277 4-372 425-703 (705)
131 KOG0646 WD40 repeat protein [G 100.0 4E-27 8.7E-32 200.5 21.7 244 61-398 81-332 (476)
132 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.3E-26 1.2E-30 203.5 29.5 278 73-420 1-284 (300)
133 KOG2096 WD40 repeat protein [G 100.0 2.7E-26 5.8E-31 186.3 23.5 297 1-371 89-400 (420)
134 KOG1036 Mitotic spindle checkp 100.0 4.2E-26 9.1E-31 184.5 24.5 276 1-363 16-294 (323)
135 KOG0269 WD40 repeat-containing 100.0 9.2E-27 2E-31 210.1 20.4 290 62-417 40-342 (839)
136 KOG4328 WD40 protein [Function 99.9 1.3E-25 2.9E-30 190.8 24.7 306 52-416 177-496 (498)
137 KOG4283 Transcription-coupled 99.9 3.5E-25 7.6E-30 177.9 24.8 300 8-372 54-364 (397)
138 KOG0321 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 197.7 24.8 334 9-415 63-445 (720)
139 KOG0269 WD40 repeat-containing 99.9 1.3E-26 2.9E-31 209.1 18.0 286 4-375 45-342 (839)
140 KOG0301 Phospholipase A2-activ 99.9 1.3E-25 2.9E-30 200.3 23.7 262 9-373 24-288 (745)
141 KOG2919 Guanine nucleotide-bin 99.9 3.6E-25 7.8E-30 180.1 23.4 288 61-406 49-361 (406)
142 KOG0650 WD40 repeat nucleolar 99.9 4.6E-25 9.9E-30 193.6 25.8 290 52-412 391-732 (733)
143 KOG1273 WD40 repeat protein [G 99.9 2.8E-25 6.1E-30 180.1 22.4 288 3-373 28-322 (405)
144 KOG2445 Nuclear pore complex c 99.9 1.3E-24 2.8E-29 175.7 25.4 273 97-416 6-319 (361)
145 KOG0646 WD40 repeat protein [G 99.9 3E-25 6.5E-30 189.2 22.0 292 78-434 12-327 (476)
146 KOG4227 WD40 repeat protein [G 99.9 6.3E-25 1.4E-29 183.3 22.3 305 55-416 50-388 (609)
147 KOG1009 Chromatin assembly com 99.9 2.3E-24 5E-29 180.7 24.5 328 5-420 20-377 (434)
148 KOG1274 WD40 repeat protein [G 99.9 2.9E-24 6.2E-29 197.9 27.2 244 3-291 18-263 (933)
149 KOG1034 Transcriptional repres 99.9 8.3E-25 1.8E-29 178.4 20.9 320 57-415 34-383 (385)
150 KOG2445 Nuclear pore complex c 99.9 9.7E-24 2.1E-28 170.7 25.7 284 58-373 10-318 (361)
151 KOG0267 Microtubule severing p 99.9 2.9E-26 6.3E-31 205.4 11.2 255 11-406 5-259 (825)
152 KOG1445 Tumor-specific antigen 99.9 9.4E-24 2E-28 186.8 25.8 201 2-233 83-292 (1012)
153 KOG0267 Microtubule severing p 99.9 4.4E-26 9.6E-31 204.2 9.6 224 9-285 39-262 (825)
154 KOG0270 WD40 repeat-containing 99.9 4.5E-24 9.8E-29 181.0 20.8 256 8-293 190-452 (463)
155 KOG0307 Vesicle coat complex C 99.9 3E-25 6.5E-30 209.3 14.5 290 65-418 10-330 (1049)
156 KOG1188 WD40 repeat protein [G 99.9 5.1E-24 1.1E-28 174.8 19.5 293 11-372 41-345 (376)
157 KOG0302 Ribosome Assembly prot 99.9 7.4E-24 1.6E-28 175.9 20.2 262 9-288 164-436 (440)
158 KOG1188 WD40 repeat protein [G 99.9 1E-23 2.2E-28 173.0 20.6 290 74-415 41-346 (376)
159 KOG0302 Ribosome Assembly prot 99.9 9E-24 1.9E-28 175.5 20.2 267 55-366 145-432 (440)
160 KOG4378 Nuclear protein COP1 [ 99.9 4.6E-24 1E-28 183.3 18.4 231 13-292 50-282 (673)
161 KOG4328 WD40 protein [Function 99.9 1.6E-23 3.4E-28 178.3 21.2 253 2-292 190-452 (498)
162 KOG4378 Nuclear protein COP1 [ 99.9 4.2E-23 9E-28 177.5 23.4 286 19-397 11-305 (673)
163 KOG1538 Uncharacterized conser 99.9 2.1E-22 4.6E-27 179.4 27.9 273 1-372 15-292 (1081)
164 KOG0322 G-protein beta subunit 99.9 3.4E-23 7.4E-28 164.0 17.3 300 54-414 7-322 (323)
165 KOG1963 WD40 repeat protein [G 99.9 4.1E-21 8.8E-26 176.8 32.3 369 4-416 22-539 (792)
166 KOG0270 WD40 repeat-containing 99.9 5.7E-22 1.2E-26 168.3 23.5 287 66-419 130-453 (463)
167 KOG0650 WD40 repeat nucleolar 99.9 2.3E-22 4.9E-27 176.9 21.6 283 3-370 405-732 (733)
168 KOG1034 Transcriptional repres 99.9 2.3E-22 5E-27 164.2 19.2 270 59-373 87-383 (385)
169 KOG0307 Vesicle coat complex C 99.9 1.7E-23 3.6E-28 197.6 14.0 251 61-376 64-330 (1049)
170 KOG1538 Uncharacterized conser 99.9 6.2E-22 1.3E-26 176.5 21.8 282 63-423 14-301 (1081)
171 KOG1445 Tumor-specific antigen 99.9 6.8E-21 1.5E-25 168.9 24.9 166 203-417 627-800 (1012)
172 KOG0642 Cell-cycle nuclear pro 99.9 1.8E-22 4E-27 176.4 13.7 305 11-419 243-565 (577)
173 KOG1007 WD repeat protein TSSC 99.9 9.4E-21 2E-25 152.2 20.2 282 55-416 57-362 (370)
174 COG2319 FOG: WD40 repeat [Gene 99.9 6.6E-19 1.4E-23 166.4 36.6 325 4-421 71-406 (466)
175 COG2319 FOG: WD40 repeat [Gene 99.9 1.7E-18 3.8E-23 163.5 38.0 316 7-416 119-443 (466)
176 KOG2919 Guanine nucleotide-bin 99.9 1.2E-19 2.6E-24 148.2 25.3 284 3-363 54-360 (406)
177 PRK11028 6-phosphogluconolacto 99.9 5.7E-19 1.2E-23 159.3 32.2 288 13-373 5-304 (330)
178 KOG4227 WD40 repeat protein [G 99.9 3.1E-20 6.8E-25 155.5 21.1 316 1-372 59-386 (609)
179 PRK11028 6-phosphogluconolacto 99.9 5.7E-19 1.2E-23 159.3 30.6 284 76-415 5-304 (330)
180 KOG1007 WD repeat protein TSSC 99.9 6.1E-20 1.3E-24 147.6 20.8 205 7-236 73-291 (370)
181 KOG0290 Conserved WD40 repeat- 99.9 1.4E-19 3.1E-24 145.6 22.6 291 52-411 36-361 (364)
182 KOG1517 Guanine nucleotide bin 99.9 6.1E-20 1.3E-24 172.0 23.4 299 60-419 1063-1385(1387)
183 KOG0642 Cell-cycle nuclear pro 99.9 7.3E-21 1.6E-25 166.5 16.3 256 2-292 298-563 (577)
184 KOG0644 Uncharacterized conser 99.9 1.5E-21 3.2E-26 178.2 11.5 289 52-419 181-472 (1113)
185 KOG1963 WD40 repeat protein [G 99.9 3.1E-19 6.8E-24 164.5 26.7 350 3-419 210-587 (792)
186 KOG0649 WD40 repeat protein [G 99.9 1.5E-18 3.2E-23 136.3 25.5 283 61-413 10-314 (325)
187 KOG0290 Conserved WD40 repeat- 99.9 1.9E-19 4.2E-24 144.9 20.9 210 59-292 94-320 (364)
188 KOG1587 Cytoplasmic dynein int 99.9 6E-19 1.3E-23 162.3 26.1 287 83-418 222-519 (555)
189 PF02239 Cytochrom_D1: Cytochr 99.8 5.3E-18 1.2E-22 152.1 30.3 320 12-419 8-351 (369)
190 KOG0649 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 135.3 24.0 246 5-291 17-275 (325)
191 KOG1523 Actin-related protein 99.8 2E-18 4.3E-23 141.0 24.4 225 57-292 6-238 (361)
192 KOG0303 Actin-binding protein 99.8 1.6E-19 3.4E-24 151.4 17.6 210 101-376 78-297 (472)
193 KOG1587 Cytoplasmic dynein int 99.8 3.3E-18 7.1E-23 157.5 27.5 277 19-374 221-517 (555)
194 KOG4497 Uncharacterized conser 99.8 5.4E-18 1.2E-22 139.0 25.3 322 4-410 14-427 (447)
195 KOG1240 Protein kinase contain 99.8 1.2E-18 2.6E-23 165.9 24.6 317 48-413 1035-1431(1431)
196 KOG2110 Uncharacterized conser 99.8 1.6E-17 3.4E-22 138.5 25.9 239 104-418 5-251 (391)
197 KOG0771 Prolactin regulatory e 99.8 1.3E-17 2.8E-22 141.5 25.4 193 207-419 148-358 (398)
198 KOG2110 Uncharacterized conser 99.8 7.8E-17 1.7E-21 134.4 29.1 237 4-293 11-251 (391)
199 PRK01742 tolB translocation pr 99.8 1.8E-18 3.9E-23 160.6 21.5 237 82-396 183-426 (429)
200 KOG0644 Uncharacterized conser 99.8 1.1E-19 2.3E-24 166.2 11.5 273 3-376 195-471 (1113)
201 KOG4497 Uncharacterized conser 99.8 8.3E-18 1.8E-22 138.0 19.9 337 66-424 13-400 (447)
202 KOG1517 Guanine nucleotide bin 99.8 1.2E-17 2.5E-22 157.0 23.3 296 4-375 1070-1383(1387)
203 KOG0303 Actin-binding protein 99.8 5E-18 1.1E-22 142.5 18.7 206 3-237 86-297 (472)
204 KOG0771 Prolactin regulatory e 99.8 1.5E-18 3.2E-23 147.2 14.6 198 4-236 150-356 (398)
205 KOG1354 Serine/threonine prote 99.8 3.9E-17 8.5E-22 134.8 22.2 272 61-375 25-361 (433)
206 KOG1240 Protein kinase contain 99.8 1E-16 2.2E-21 153.0 27.7 267 4-295 1055-1339(1431)
207 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.4E-22 140.9 17.7 163 61-237 13-198 (434)
208 KOG0322 G-protein beta subunit 99.8 9.7E-18 2.1E-22 133.4 16.0 283 11-372 26-322 (323)
209 KOG1524 WD40 repeat-containing 99.8 1.2E-17 2.6E-22 145.7 16.6 203 11-283 76-279 (737)
210 KOG1334 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 144.0 16.2 306 2-376 146-469 (559)
211 KOG1524 WD40 repeat-containing 99.8 3.9E-17 8.5E-22 142.5 19.5 208 74-370 76-283 (737)
212 PRK01742 tolB translocation pr 99.8 5.9E-17 1.3E-21 150.6 21.3 211 19-289 183-400 (429)
213 KOG2315 Predicted translation 99.8 1.6E-15 3.5E-20 133.5 28.0 317 3-419 39-394 (566)
214 KOG1523 Actin-related protein 99.8 2.2E-16 4.7E-21 129.3 20.7 248 103-396 9-260 (361)
215 KOG2139 WD40 repeat protein [G 99.8 1.2E-15 2.6E-20 127.0 24.3 306 61-415 98-431 (445)
216 KOG2321 WD40 repeat protein [G 99.8 2.2E-16 4.8E-21 139.0 20.5 329 20-416 7-344 (703)
217 PRK03629 tolB translocation pr 99.7 1.2E-15 2.5E-20 141.5 25.7 235 83-396 179-428 (429)
218 PRK04922 tolB translocation pr 99.7 3.9E-16 8.4E-21 145.5 22.7 234 83-395 184-432 (433)
219 KOG2394 WD40 protein DMR-N9 [G 99.7 2.8E-16 6.1E-21 137.3 19.8 254 117-421 134-458 (636)
220 KOG2139 WD40 repeat protein [G 99.7 2E-15 4.4E-20 125.7 23.4 238 4-282 104-366 (445)
221 KOG2111 Uncharacterized conser 99.7 1.3E-14 2.7E-19 119.0 27.3 237 64-374 8-257 (346)
222 KOG3881 Uncharacterized conser 99.7 7.9E-16 1.7E-20 129.4 20.3 277 60-397 54-343 (412)
223 PRK03629 tolB translocation pr 99.7 3.4E-15 7.3E-20 138.5 25.7 233 129-435 180-426 (429)
224 KOG1310 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 135.5 17.8 253 101-380 47-310 (758)
225 KOG2111 Uncharacterized conser 99.7 1.4E-14 3.1E-19 118.8 24.3 241 106-418 7-259 (346)
226 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-14 2.8E-19 130.4 25.7 292 76-419 9-306 (369)
227 KOG3881 Uncharacterized conser 99.7 2.7E-15 5.8E-20 126.3 19.5 258 104-419 55-324 (412)
228 PRK05137 tolB translocation pr 99.7 1.3E-14 2.9E-19 135.4 25.7 234 83-396 182-433 (435)
229 KOG1272 WD40-repeat-containing 99.7 2.1E-16 4.5E-21 135.7 11.1 227 4-289 135-361 (545)
230 PRK05137 tolB translocation pr 99.7 2.1E-14 4.5E-19 134.1 25.5 222 128-423 182-420 (435)
231 PRK02889 tolB translocation pr 99.7 1E-14 2.2E-19 135.5 23.2 235 83-396 176-425 (427)
232 KOG1409 Uncharacterized conser 99.7 7.1E-15 1.5E-19 121.7 19.0 251 52-372 15-269 (404)
233 PRK04922 tolB translocation pr 99.7 9.6E-15 2.1E-19 136.2 22.0 233 128-434 184-430 (433)
234 COG5354 Uncharacterized protei 99.7 3.9E-13 8.5E-18 117.3 28.3 313 3-419 37-399 (561)
235 PF10282 Lactonase: Lactonase, 99.7 2.7E-12 5.8E-17 115.9 34.9 308 13-393 2-345 (345)
236 PRK02889 tolB translocation pr 99.7 2.8E-14 6E-19 132.6 22.6 234 128-435 176-423 (427)
237 KOG2394 WD40 protein DMR-N9 [G 99.6 6.3E-15 1.4E-19 129.0 15.8 202 212-438 182-386 (636)
238 KOG1272 WD40-repeat-containing 99.6 2.6E-15 5.6E-20 129.1 12.3 271 62-412 130-406 (545)
239 PF10282 Lactonase: Lactonase, 99.6 1.2E-12 2.5E-17 118.2 29.6 297 76-419 2-328 (345)
240 KOG2321 WD40 repeat protein [G 99.6 1.4E-13 3E-18 121.8 22.6 283 3-374 56-344 (703)
241 PF08662 eIF2A: Eukaryotic tra 99.6 1.3E-13 2.7E-18 112.6 18.6 155 207-420 9-184 (194)
242 KOG0974 WD-repeat protein WDR6 99.6 3.9E-13 8.5E-18 127.1 23.7 149 6-183 141-290 (967)
243 KOG2314 Translation initiation 99.6 9.7E-13 2.1E-17 116.0 24.4 318 4-417 216-575 (698)
244 TIGR02800 propeller_TolB tol-p 99.6 9.6E-13 2.1E-17 123.3 24.8 233 82-393 169-416 (417)
245 KOG1354 Serine/threonine prote 99.6 1.2E-13 2.6E-18 114.6 16.1 262 3-293 30-362 (433)
246 KOG0974 WD-repeat protein WDR6 99.6 2.1E-13 4.5E-18 128.9 19.3 281 60-419 6-292 (967)
247 PRK04792 tolB translocation pr 99.6 9.7E-13 2.1E-17 122.6 23.5 235 84-396 199-447 (448)
248 TIGR02658 TTQ_MADH_Hv methylam 99.6 3.5E-11 7.6E-16 105.6 31.4 275 83-421 27-336 (352)
249 TIGR02800 propeller_TolB tol-p 99.6 1.8E-12 3.9E-17 121.4 24.7 222 129-424 171-406 (417)
250 PRK04792 tolB translocation pr 99.6 2.1E-12 4.6E-17 120.4 24.1 233 129-435 199-445 (448)
251 PRK00178 tolB translocation pr 99.5 2.1E-12 4.6E-17 121.0 24.0 235 84-396 180-428 (430)
252 PF08662 eIF2A: Eukaryotic tra 99.5 6.7E-13 1.5E-17 108.3 18.0 151 65-236 9-181 (194)
253 PRK00178 tolB translocation pr 99.5 3.1E-12 6.7E-17 119.9 25.1 233 129-435 180-426 (430)
254 KOG0280 Uncharacterized conser 99.5 4.5E-12 9.7E-17 103.2 22.0 206 61-292 69-286 (339)
255 TIGR02658 TTQ_MADH_Hv methylam 99.5 8.9E-11 1.9E-15 103.1 31.7 279 20-381 27-338 (352)
256 COG2706 3-carboxymuconate cycl 99.5 2.2E-10 4.7E-15 96.7 31.8 302 19-394 15-345 (346)
257 PRK01029 tolB translocation pr 99.5 3.6E-12 7.9E-17 117.8 23.3 238 129-433 166-421 (428)
258 COG2706 3-carboxymuconate cycl 99.5 1.6E-10 3.4E-15 97.6 29.2 288 82-416 15-322 (346)
259 COG4946 Uncharacterized protei 99.5 1.3E-10 2.7E-15 101.1 28.1 224 7-280 275-507 (668)
260 COG5170 CDC55 Serine/threonine 99.5 3E-12 6.5E-17 105.0 16.9 230 60-293 25-312 (460)
261 COG5354 Uncharacterized protei 99.5 6.9E-11 1.5E-15 103.6 24.9 298 3-405 76-419 (561)
262 PRK01029 tolB translocation pr 99.5 4.8E-11 1E-15 110.5 25.8 242 83-397 165-426 (428)
263 TIGR03300 assembly_YfgL outer 99.5 1.1E-10 2.3E-15 107.7 28.1 307 9-412 64-376 (377)
264 KOG2315 Predicted translation 99.5 2.8E-11 6.1E-16 107.3 21.8 252 65-395 129-410 (566)
265 KOG2041 WD40 repeat protein [G 99.4 2.8E-11 6.1E-16 110.3 20.7 288 60-414 13-336 (1189)
266 KOG0309 Conserved WD40 repeat- 99.4 2.1E-12 4.6E-17 117.8 13.6 292 61-417 24-341 (1081)
267 KOG0280 Uncharacterized conser 99.4 3E-11 6.5E-16 98.4 17.7 206 64-291 124-334 (339)
268 COG4946 Uncharacterized protei 99.4 2.9E-09 6.3E-14 92.9 30.1 204 158-423 274-485 (668)
269 KOG1409 Uncharacterized conser 99.4 1.5E-11 3.3E-16 102.3 15.5 276 100-446 20-305 (404)
270 KOG2041 WD40 repeat protein [G 99.4 6.8E-11 1.5E-15 107.9 20.4 247 2-281 18-278 (1189)
271 KOG4547 WD40 repeat-containing 99.4 2.1E-11 4.5E-16 108.9 16.6 210 6-235 1-221 (541)
272 PRK04043 tolB translocation pr 99.3 1.3E-09 2.7E-14 100.3 25.8 206 152-430 189-415 (419)
273 PF04762 IKI3: IKI3 family; I 99.3 6.8E-09 1.5E-13 104.1 32.6 336 2-416 124-520 (928)
274 KOG1064 RAVE (regulator of V-A 99.3 1.4E-11 3.1E-16 122.8 13.0 189 5-242 2215-2406(2439)
275 PF04762 IKI3: IKI3 family; I 99.3 1.2E-08 2.6E-13 102.4 33.5 203 60-292 74-335 (928)
276 KOG1912 WD40 repeat protein [G 99.3 1.8E-09 3.8E-14 99.8 24.7 371 9-422 78-513 (1062)
277 TIGR03300 assembly_YfgL outer 99.3 3.2E-09 6.9E-14 97.9 26.9 279 72-420 64-343 (377)
278 KOG1064 RAVE (regulator of V-A 99.3 4.2E-11 9.2E-16 119.6 13.6 197 57-297 2204-2405(2439)
279 KOG4190 Uncharacterized conser 99.3 2.9E-11 6.3E-16 107.1 11.2 176 54-240 728-912 (1034)
280 PLN02919 haloacid dehalogenase 99.3 3.3E-09 7.2E-14 108.4 27.2 285 109-419 572-892 (1057)
281 KOG4532 WD40-like repeat conta 99.3 1.3E-09 2.9E-14 87.9 19.0 245 10-292 84-333 (344)
282 KOG2314 Translation initiation 99.3 8.9E-09 1.9E-13 91.6 25.4 236 4-291 255-526 (698)
283 KOG4547 WD40 repeat-containing 99.2 9.4E-10 2E-14 98.5 17.7 150 7-184 67-223 (541)
284 KOG1912 WD40 repeat protein [G 99.2 3.4E-09 7.4E-14 98.0 21.6 245 5-291 22-305 (1062)
285 KOG4714 Nucleoporin [Nuclear s 99.2 1.8E-10 4E-15 92.3 11.6 201 12-235 49-255 (319)
286 KOG3914 WD repeat protein WDR4 99.2 5.4E-10 1.2E-14 95.3 13.9 166 3-190 67-232 (390)
287 PLN02919 haloacid dehalogenase 99.2 3.3E-08 7.2E-13 101.2 29.3 277 65-377 571-892 (1057)
288 PRK11138 outer membrane biogen 99.2 6E-08 1.3E-12 89.8 27.1 317 9-414 68-393 (394)
289 PRK04043 tolB translocation pr 99.2 3.8E-08 8.3E-13 90.6 25.2 173 83-292 169-359 (419)
290 PF15492 Nbas_N: Neuroblastoma 99.1 4.4E-08 9.5E-13 80.6 21.7 149 66-225 2-168 (282)
291 COG5170 CDC55 Serine/threonine 99.1 9.8E-10 2.1E-14 90.5 12.1 259 2-289 30-366 (460)
292 KOG0882 Cyclophilin-related pe 99.1 2.8E-09 6.1E-14 92.3 14.9 282 102-436 7-326 (558)
293 PF08450 SGL: SMP-30/Gluconola 99.1 8.9E-07 1.9E-11 76.3 29.9 225 66-402 4-242 (246)
294 PF15492 Nbas_N: Neuroblastoma 99.1 3.2E-07 7E-12 75.6 24.0 236 110-420 3-264 (282)
295 KOG4532 WD40-like repeat conta 99.1 6.2E-08 1.3E-12 78.5 19.5 197 74-295 85-287 (344)
296 PF07433 DUF1513: Protein of u 99.1 3.6E-07 7.8E-12 77.7 24.6 241 3-289 9-284 (305)
297 KOG0882 Cyclophilin-related pe 99.0 6.5E-09 1.4E-13 90.1 13.7 267 7-297 17-312 (558)
298 KOG4190 Uncharacterized conser 99.0 2.1E-09 4.5E-14 95.6 9.0 248 101-414 732-987 (1034)
299 PF00400 WD40: WD domain, G-be 99.0 2.9E-09 6.3E-14 61.8 6.3 38 52-89 2-39 (39)
300 KOG3914 WD repeat protein WDR4 99.0 1.7E-08 3.8E-13 86.3 13.3 164 64-244 65-233 (390)
301 PF00400 WD40: WD domain, G-be 98.9 3.6E-09 7.8E-14 61.4 5.7 39 375-413 1-39 (39)
302 KOG4714 Nucleoporin [Nuclear s 98.9 1.7E-08 3.6E-13 81.3 11.1 150 9-182 100-255 (319)
303 PF08450 SGL: SMP-30/Gluconola 98.9 8.7E-06 1.9E-10 70.2 27.6 219 5-277 6-241 (246)
304 KOG0309 Conserved WD40 repeat- 98.9 2.5E-08 5.5E-13 91.9 12.2 220 55-291 108-340 (1081)
305 KOG2695 WD40 repeat protein [G 98.9 8.2E-09 1.8E-13 86.5 8.2 159 167-385 228-388 (425)
306 KOG2066 Vacuolar assembly/sort 98.9 4E-07 8.6E-12 85.2 19.5 182 10-236 49-235 (846)
307 PF13360 PQQ_2: PQQ-like domai 98.8 1.1E-06 2.4E-11 75.5 20.9 229 18-293 1-233 (238)
308 PRK11138 outer membrane biogen 98.8 6.1E-06 1.3E-10 76.5 26.9 279 73-420 69-358 (394)
309 PF06977 SdiA-regulated: SdiA- 98.8 5E-06 1.1E-10 69.9 23.1 221 54-287 14-247 (248)
310 PF13360 PQQ_2: PQQ-like domai 98.8 1E-05 2.2E-10 69.5 26.0 234 82-379 2-236 (238)
311 KOG1645 RING-finger-containing 98.8 5.1E-07 1.1E-11 77.6 17.1 269 85-416 175-462 (463)
312 KOG1832 HIV-1 Vpr-binding prot 98.8 9.7E-09 2.1E-13 96.5 6.7 204 49-293 1089-1294(1516)
313 KOG4649 PQQ (pyrrolo-quinoline 98.8 2.2E-05 4.7E-10 64.0 24.5 144 10-183 23-167 (354)
314 PF07433 DUF1513: Protein of u 98.8 1.4E-05 3E-10 68.3 24.6 209 65-293 8-250 (305)
315 KOG2695 WD40 repeat protein [G 98.8 4.5E-08 9.8E-13 82.1 9.3 161 68-244 218-386 (425)
316 KOG2066 Vacuolar assembly/sort 98.7 3.5E-07 7.6E-12 85.5 14.7 192 61-291 39-234 (846)
317 KOG1920 IkappaB kinase complex 98.7 2.3E-05 5E-10 77.3 25.8 246 60-375 67-324 (1265)
318 KOG1645 RING-finger-containing 98.7 1.3E-06 2.7E-11 75.3 15.4 248 1-290 196-461 (463)
319 KOG2114 Vacuolar assembly/sort 98.7 7.4E-06 1.6E-10 77.6 21.4 219 111-387 30-258 (933)
320 KOG3617 WD40 and TPR repeat-co 98.7 2.2E-06 4.8E-11 80.8 17.4 188 4-236 21-222 (1416)
321 PF00930 DPPIV_N: Dipeptidyl p 98.7 4.4E-05 9.6E-10 69.5 25.9 305 7-403 1-345 (353)
322 cd00216 PQQ_DH Dehydrogenases 98.7 4.6E-05 1E-09 72.5 26.9 212 10-240 61-325 (488)
323 KOG1275 PAB-dependent poly(A) 98.6 7.8E-07 1.7E-11 84.4 14.4 185 73-289 147-341 (1118)
324 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.5E-11 83.2 15.2 186 9-234 146-342 (1118)
325 KOG3621 WD40 repeat-containing 98.6 6.4E-06 1.4E-10 76.3 19.5 153 6-184 41-200 (726)
326 PRK02888 nitrous-oxide reducta 98.6 1.3E-05 2.9E-10 75.0 20.9 299 13-416 69-405 (635)
327 PF06433 Me-amine-dh_H: Methyl 98.6 2.6E-06 5.6E-11 73.5 15.1 280 83-425 17-330 (342)
328 PF14583 Pectate_lyase22: Olig 98.6 0.0004 8.6E-09 61.6 28.3 276 67-415 41-381 (386)
329 KOG2114 Vacuolar assembly/sort 98.6 3E-05 6.4E-10 73.7 22.0 198 63-291 27-244 (933)
330 KOG1832 HIV-1 Vpr-binding prot 98.6 8.3E-08 1.8E-12 90.5 5.3 218 101-401 1098-1317(1516)
331 PF08596 Lgl_C: Lethal giant l 98.5 5.8E-05 1.3E-09 68.7 22.1 289 63-415 3-338 (395)
332 KOG1920 IkappaB kinase complex 98.5 7E-05 1.5E-09 74.0 23.2 209 151-416 69-323 (1265)
333 COG0823 TolB Periplasmic compo 98.5 1.4E-05 3.1E-10 73.3 17.3 189 146-404 188-388 (425)
334 PF06433 Me-amine-dh_H: Methyl 98.5 0.00026 5.6E-09 61.5 23.6 281 20-383 17-330 (342)
335 PF08596 Lgl_C: Lethal giant l 98.5 9.4E-05 2E-09 67.4 22.1 267 2-290 5-335 (395)
336 KOG1008 Uncharacterized conser 98.4 1.6E-07 3.4E-12 85.5 4.0 201 5-236 65-277 (783)
337 KOG1008 Uncharacterized conser 98.4 8.5E-08 1.8E-12 87.2 1.9 207 61-291 56-276 (783)
338 PRK02888 nitrous-oxide reducta 98.4 2.8E-05 6.1E-10 72.9 18.2 198 4-235 198-405 (635)
339 COG0823 TolB Periplasmic compo 98.4 5.7E-05 1.2E-09 69.5 18.7 175 84-292 174-360 (425)
340 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.003 6.6E-08 60.5 31.3 215 10-239 69-338 (527)
341 KOG3621 WD40 repeat-containing 98.3 0.00021 4.5E-09 66.7 21.6 120 60-182 32-155 (726)
342 PF06977 SdiA-regulated: SdiA- 98.3 0.00015 3.4E-09 61.1 18.9 223 144-412 15-247 (248)
343 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00025 5.5E-09 64.6 21.8 281 70-424 1-325 (353)
344 KOG1897 Damage-specific DNA bi 98.3 0.0042 9.2E-08 60.7 30.0 68 345-416 832-899 (1096)
345 PF04053 Coatomer_WDAD: Coatom 98.3 0.00076 1.7E-08 62.4 24.5 150 55-236 26-175 (443)
346 PF00780 CNH: CNH domain; Int 98.3 0.0017 3.7E-08 57.0 25.8 146 71-238 5-169 (275)
347 PF04053 Coatomer_WDAD: Coatom 98.3 0.00071 1.5E-08 62.6 23.4 234 104-418 32-265 (443)
348 PF11768 DUF3312: Protein of u 98.2 6.2E-05 1.3E-09 68.9 14.7 118 150-292 205-331 (545)
349 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0056 1.2E-07 56.7 29.2 177 84-291 62-247 (410)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0079 1.7E-07 57.7 30.6 210 73-296 69-339 (527)
351 COG3204 Uncharacterized protei 98.2 0.0019 4E-08 54.4 21.2 177 57-236 81-265 (316)
352 PF11768 DUF3312: Protein of u 98.1 4.5E-05 9.8E-10 69.8 12.8 74 59-137 257-330 (545)
353 cd00216 PQQ_DH Dehydrogenases 98.1 0.0039 8.5E-08 59.5 26.3 162 73-241 61-271 (488)
354 KOG3617 WD40 and TPR repeat-co 98.1 6.1E-05 1.3E-09 71.6 13.1 112 65-184 19-134 (1416)
355 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0036 7.7E-08 51.5 25.1 110 73-191 23-133 (354)
356 COG3490 Uncharacterized protei 98.1 0.0013 2.9E-08 54.8 18.5 204 55-289 113-347 (366)
357 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00045 9.7E-09 49.2 13.7 101 64-176 2-109 (111)
358 PF02897 Peptidase_S9_N: Proly 98.0 0.0068 1.5E-07 56.9 25.7 118 62-183 124-262 (414)
359 PF05096 Glu_cyclase_2: Glutam 98.0 0.0071 1.5E-07 50.9 21.7 216 49-280 31-249 (264)
360 COG3386 Gluconolactonase [Carb 98.0 0.0046 9.9E-08 54.3 21.5 226 110-403 30-273 (307)
361 COG3391 Uncharacterized conser 97.9 0.017 3.7E-07 53.2 27.7 267 85-421 13-289 (381)
362 PF04841 Vps16_N: Vps16, N-ter 97.9 0.02 4.4E-07 53.1 27.7 52 345-397 219-271 (410)
363 smart00320 WD40 WD40 repeats. 97.8 5.9E-05 1.3E-09 43.0 5.4 36 54-89 5-40 (40)
364 PF14727 PHTB1_N: PTHB1 N-term 97.8 0.024 5.2E-07 51.9 28.8 293 73-417 37-362 (418)
365 smart00320 WD40 WD40 repeats. 97.8 6.9E-05 1.5E-09 42.7 5.6 39 375-413 2-40 (40)
366 PF14583 Pectate_lyase22: Olig 97.8 0.0077 1.7E-07 53.7 19.9 262 89-424 16-337 (386)
367 COG3391 Uncharacterized conser 97.8 0.03 6.5E-07 51.6 29.0 266 63-396 32-309 (381)
368 PF03178 CPSF_A: CPSF A subuni 97.8 0.029 6.4E-07 50.5 25.6 136 83-234 2-157 (321)
369 PF02897 Peptidase_S9_N: Proly 97.7 0.04 8.8E-07 51.7 25.3 238 4-293 129-407 (414)
370 PF03178 CPSF_A: CPSF A subuni 97.7 0.021 4.5E-07 51.5 22.5 146 73-235 42-203 (321)
371 PF08553 VID27: VID27 cytoplas 97.7 0.0023 5E-08 62.8 16.9 148 216-415 493-647 (794)
372 PF00780 CNH: CNH domain; Int 97.7 0.027 5.8E-07 49.5 22.6 250 117-423 6-263 (275)
373 PF05096 Glu_cyclase_2: Glutam 97.7 0.018 3.8E-07 48.6 19.7 186 8-224 54-251 (264)
374 KOG4640 Anaphase-promoting com 97.7 9.4E-05 2E-09 68.0 6.9 89 4-114 26-115 (665)
375 KOG4640 Anaphase-promoting com 97.7 0.00022 4.8E-09 65.7 9.0 95 61-160 20-115 (665)
376 PF05694 SBP56: 56kDa selenium 97.7 0.037 7.9E-07 50.0 23.6 251 9-279 86-391 (461)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.041 8.9E-07 50.4 28.9 91 66-159 6-117 (415)
378 COG3386 Gluconolactonase [Carb 97.6 0.033 7.2E-07 49.0 21.4 195 68-290 31-243 (307)
379 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0083 1.8E-07 42.9 13.6 103 107-229 2-109 (111)
380 KOG2395 Protein involved in va 97.6 0.0023 5E-08 58.1 13.2 144 217-415 347-500 (644)
381 PF08553 VID27: VID27 cytoplas 97.5 0.003 6.4E-08 62.1 14.9 149 118-290 493-647 (794)
382 PRK13616 lipoprotein LpqB; Pro 97.4 0.042 9.2E-07 53.3 21.1 152 62-234 350-525 (591)
383 COG3204 Uncharacterized protei 97.3 0.077 1.7E-06 45.0 19.6 220 146-413 81-310 (316)
384 PF12234 Rav1p_C: RAVE protein 97.3 0.025 5.4E-07 54.3 17.2 128 50-180 18-155 (631)
385 PRK13616 lipoprotein LpqB; Pro 97.3 0.029 6.3E-07 54.4 17.8 186 2-229 353-563 (591)
386 KOG4441 Proteins containing BT 97.3 0.096 2.1E-06 50.9 21.4 155 70-241 282-459 (571)
387 KOG2395 Protein involved in va 97.2 0.0056 1.2E-07 55.7 11.5 145 123-291 351-501 (644)
388 PHA02713 hypothetical protein; 97.2 0.032 7E-07 54.2 17.6 71 354-426 463-544 (557)
389 PF07995 GSDH: Glucose / Sorbo 97.2 0.17 3.6E-06 45.7 31.1 76 332-410 245-330 (331)
390 KOG1897 Damage-specific DNA bi 97.2 0.31 6.7E-06 48.5 26.4 120 62-182 488-614 (1096)
391 KOG2444 WD40 repeat protein [G 97.1 0.00093 2E-08 53.9 5.3 66 352-417 111-179 (238)
392 PF10168 Nup88: Nuclear pore c 97.1 0.21 4.6E-06 49.6 21.9 127 11-139 34-182 (717)
393 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0019 4.2E-08 38.3 5.0 34 61-95 11-44 (47)
394 COG3490 Uncharacterized protei 97.0 0.16 3.4E-06 43.0 20.9 104 106-222 69-179 (366)
395 KOG4441 Proteins containing BT 97.0 0.17 3.6E-06 49.3 19.9 191 9-239 284-504 (571)
396 PHA02713 hypothetical protein; 97.0 0.045 9.8E-07 53.2 16.1 150 72-238 351-537 (557)
397 PF05694 SBP56: 56kDa selenium 96.8 0.33 7.1E-06 44.2 18.8 209 162-424 87-351 (461)
398 PF12894 Apc4_WD40: Anaphase-p 96.8 0.005 1.1E-07 36.5 5.2 33 385-417 11-43 (47)
399 COG5276 Uncharacterized conser 96.7 0.3 6.5E-06 41.6 26.3 159 103-293 85-244 (370)
400 KOG2444 WD40 repeat protein [G 96.7 0.008 1.7E-07 48.7 7.4 105 10-137 70-178 (238)
401 PF10647 Gmad1: Lipoprotein Lp 96.7 0.33 7.2E-06 41.8 20.0 152 63-225 25-186 (253)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.5 1.1E-05 43.5 24.8 75 345-420 310-403 (415)
403 PF15390 DUF4613: Domain of un 96.7 0.56 1.2E-05 44.1 26.8 156 62-236 20-188 (671)
404 KOG2079 Vacuolar assembly/sort 96.5 0.0092 2E-07 59.1 7.7 104 10-136 99-203 (1206)
405 KOG4499 Ca2+-binding protein R 96.4 0.4 8.6E-06 39.4 19.6 48 347-395 216-263 (310)
406 KOG4499 Ca2+-binding protein R 96.4 0.45 9.8E-06 39.1 17.0 142 105-272 109-264 (310)
407 PRK10115 protease 2; Provision 96.3 1.5 3.2E-05 44.1 29.3 115 62-181 127-255 (686)
408 PF15390 DUF4613: Domain of un 96.2 1.1 2.4E-05 42.3 23.8 120 60-183 55-188 (671)
409 PF03022 MRJP: Major royal jel 96.2 0.66 1.4E-05 40.8 16.9 199 174-404 35-254 (287)
410 PHA03098 kelch-like protein; P 96.2 0.34 7.3E-06 47.3 16.6 150 72-238 342-515 (534)
411 TIGR03074 PQQ_membr_DH membran 96.2 1.7 3.8E-05 43.8 22.2 228 10-241 194-484 (764)
412 PF10647 Gmad1: Lipoprotein Lp 96.0 0.86 1.9E-05 39.3 20.1 113 152-291 25-145 (253)
413 KOG3630 Nuclear pore complex, 96.0 0.19 4.2E-06 50.7 13.7 200 4-220 47-259 (1405)
414 PRK10115 protease 2; Provision 96.0 2.1 4.5E-05 43.1 29.1 73 105-183 127-209 (686)
415 COG3823 Glutamine cyclotransfe 95.9 0.7 1.5E-05 37.3 14.0 135 81-223 109-248 (262)
416 KOG2079 Vacuolar assembly/sort 95.8 0.043 9.3E-07 54.7 8.4 69 344-415 132-203 (1206)
417 PF08728 CRT10: CRT10; InterP 95.8 1.1 2.3E-05 44.1 17.4 152 73-233 49-245 (717)
418 PF12234 Rav1p_C: RAVE protein 95.8 0.31 6.8E-06 47.1 13.6 124 153-291 32-157 (631)
419 PHA02790 Kelch-like protein; P 95.7 1.3 2.8E-05 42.4 17.8 146 71-237 317-473 (480)
420 PHA03098 kelch-like protein; P 95.7 1 2.2E-05 44.0 17.4 151 71-239 293-469 (534)
421 PF14870 PSII_BNR: Photosynthe 95.6 1.5 3.3E-05 38.6 26.5 277 60-412 15-301 (302)
422 PF14870 PSII_BNR: Photosynthe 95.5 1.6 3.5E-05 38.5 21.9 161 101-287 141-301 (302)
423 KOG2280 Vacuolar assembly/sort 95.5 2.7 5.9E-05 41.0 20.4 90 81-178 62-152 (829)
424 KOG3630 Nuclear pore complex, 95.3 0.41 8.9E-06 48.5 13.0 149 106-280 102-262 (1405)
425 TIGR02604 Piru_Ver_Nterm putat 95.3 2.3 4.9E-05 39.2 23.3 103 62-170 14-142 (367)
426 COG5167 VID27 Protein involved 95.3 0.79 1.7E-05 42.3 13.8 62 353-415 571-632 (776)
427 TIGR02604 Piru_Ver_Nterm putat 95.2 2.4 5.3E-05 39.0 25.2 108 105-221 14-140 (367)
428 COG4590 ABC-type uncharacteriz 95.2 0.1 2.3E-06 47.0 7.8 168 101-294 217-390 (733)
429 PF14727 PHTB1_N: PTHB1 N-term 95.1 1.9 4.2E-05 39.9 16.0 163 212-415 33-204 (418)
430 COG3292 Predicted periplasmic 95.1 1.2 2.7E-05 41.8 14.3 54 345-401 421-479 (671)
431 PF10313 DUF2415: Uncharacteri 94.9 0.18 4E-06 29.0 5.6 32 62-93 1-35 (43)
432 PF10168 Nup88: Nuclear pore c 94.8 0.72 1.6E-05 46.0 13.4 74 343-418 85-182 (717)
433 PF11635 Med16: Mediator compl 94.7 5.7 0.00012 40.5 21.3 65 345-410 262-345 (753)
434 PF10313 DUF2415: Uncharacteri 94.6 0.16 3.4E-06 29.2 4.9 31 205-235 2-34 (43)
435 TIGR03118 PEPCTERM_chp_1 conse 94.6 2.8 6.1E-05 36.3 22.8 243 106-395 24-307 (336)
436 PF07995 GSDH: Glucose / Sorbo 94.5 3.6 7.7E-05 37.2 24.1 108 4-129 7-136 (331)
437 PF08728 CRT10: CRT10; InterP 94.4 2.2 4.7E-05 42.1 15.0 162 10-180 49-245 (717)
438 PRK13684 Ycf48-like protein; P 94.4 3.8 8.3E-05 37.1 26.9 155 204-415 173-331 (334)
439 PF07569 Hira: TUP1-like enhan 94.3 0.35 7.5E-06 40.5 8.6 64 352-416 19-96 (219)
440 TIGR03074 PQQ_membr_DH membran 94.3 7 0.00015 39.7 24.9 114 73-191 194-354 (764)
441 PHA02790 Kelch-like protein; P 94.0 3.3 7.2E-05 39.7 15.8 148 72-239 271-428 (480)
442 PF07569 Hira: TUP1-like enhan 94.0 0.43 9.4E-06 39.9 8.7 75 216-292 22-97 (219)
443 KOG2377 Uncharacterized conser 93.9 2.3 5E-05 38.9 13.1 122 60-186 65-190 (657)
444 PRK13684 Ycf48-like protein; P 93.8 5 0.00011 36.3 20.5 160 103-289 171-330 (334)
445 KOG4460 Nuclear pore complex, 93.4 2.3 4.9E-05 39.6 12.3 74 13-88 55-130 (741)
446 KOG2280 Vacuolar assembly/sort 93.3 9 0.00019 37.7 17.5 193 173-395 64-269 (829)
447 COG5167 VID27 Protein involved 93.2 3.3 7.1E-05 38.5 13.0 62 117-182 572-633 (776)
448 PF11635 Med16: Mediator compl 92.8 13 0.00027 38.1 20.2 209 76-285 65-345 (753)
449 KOG2377 Uncharacterized conser 92.5 3.3 7.2E-05 37.9 11.9 117 83-214 43-164 (657)
450 TIGR02276 beta_rpt_yvtn 40-res 92.3 0.89 1.9E-05 26.0 5.9 40 353-393 1-41 (42)
451 KOG1916 Nuclear protein, conta 92.2 0.45 9.7E-06 47.0 6.7 70 351-420 243-328 (1283)
452 PF13449 Phytase-like: Esteras 92.0 9 0.00019 34.6 15.6 165 104-279 19-232 (326)
453 COG4257 Vgb Streptogramin lyas 92.0 7.1 0.00015 33.4 18.3 240 106-423 63-313 (353)
454 PF14761 HPS3_N: Hermansky-Pud 92.0 6.1 0.00013 32.5 16.0 176 74-290 29-214 (215)
455 PLN00033 photosystem II stabil 91.8 11 0.00024 35.0 17.0 155 61-231 238-396 (398)
456 PF12657 TFIIIC_delta: Transcr 91.2 3.4 7.3E-05 33.2 10.0 29 344-373 87-121 (173)
457 PF10214 Rrn6: RNA polymerase 90.7 22 0.00047 36.6 26.2 88 203-292 145-234 (765)
458 KOG2247 WD40 repeat-containing 90.6 0.038 8.2E-07 50.1 -1.8 146 61-226 34-180 (615)
459 PF10395 Utp8: Utp8 family; I 90.4 19 0.00042 35.4 15.7 173 61-243 129-314 (670)
460 PF05935 Arylsulfotrans: Aryls 90.3 17 0.00038 34.8 16.2 120 67-191 153-311 (477)
461 PF10214 Rrn6: RNA polymerase 90.2 24 0.00053 36.3 22.7 175 102-291 77-277 (765)
462 COG5276 Uncharacterized conser 90.0 12 0.00026 32.4 26.6 189 10-236 96-287 (370)
463 KOG2247 WD40 repeat-containing 89.9 0.028 6E-07 51.0 -3.2 138 9-176 45-183 (615)
464 PF08801 Nucleoporin_N: Nup133 89.8 16 0.00036 34.4 14.9 31 204-235 190-220 (422)
465 KOG1900 Nuclear pore complex, 89.7 21 0.00046 37.8 15.8 151 80-237 96-275 (1311)
466 TIGR03118 PEPCTERM_chp_1 conse 89.6 13 0.00029 32.4 22.9 230 152-419 24-283 (336)
467 PF02333 Phytase: Phytase; In 89.5 16 0.00036 33.3 21.8 196 71-291 66-291 (381)
468 TIGR02276 beta_rpt_yvtn 40-res 89.5 1.4 3.1E-05 25.1 4.9 31 160-190 1-31 (42)
469 KOG1900 Nuclear pore complex, 89.0 12 0.00026 39.4 13.6 181 154-374 82-273 (1311)
470 PLN02153 epithiospecifier prot 89.0 18 0.00039 32.9 16.6 107 72-186 137-289 (341)
471 PF12768 Rax2: Cortical protei 88.9 14 0.0003 32.4 12.3 92 20-134 16-121 (281)
472 PLN02153 epithiospecifier prot 88.4 19 0.00042 32.7 20.7 154 72-239 85-289 (341)
473 PF11715 Nup160: Nucleoporin N 88.4 1.4 3E-05 43.2 6.9 38 62-99 215-256 (547)
474 TIGR03548 mutarot_permut cycli 88.3 19 0.00041 32.5 21.7 110 72-186 72-199 (323)
475 PF05935 Arylsulfotrans: Aryls 88.2 25 0.00055 33.8 15.7 158 73-239 115-306 (477)
476 COG4590 ABC-type uncharacteriz 88.2 3.1 6.6E-05 38.1 8.0 165 56-237 215-389 (733)
477 PF14781 BBS2_N: Ciliary BBSom 88.2 9.3 0.0002 28.7 13.0 112 67-185 4-129 (136)
478 smart00036 CNH Domain found in 87.9 19 0.00041 32.1 29.4 61 72-137 12-74 (302)
479 KOG1983 Tomosyn and related SN 87.8 12 0.00026 39.4 13.2 68 345-419 201-268 (993)
480 PLN02193 nitrile-specifier pro 87.7 27 0.00059 33.5 17.2 109 72-186 278-415 (470)
481 TIGR03606 non_repeat_PQQ dehyd 87.6 22 0.00049 33.5 13.6 54 61-114 29-88 (454)
482 PF13449 Phytase-like: Esteras 87.4 22 0.00047 32.1 17.0 126 151-279 20-164 (326)
483 PF07676 PD40: WD40-like Beta 87.4 3.4 7.3E-05 23.2 5.4 32 381-412 4-38 (39)
484 PF07250 Glyoxal_oxid_N: Glyox 87.2 11 0.00024 32.0 10.5 145 85-238 48-201 (243)
485 KOG1983 Tomosyn and related SN 87.2 27 0.00058 37.0 15.2 30 62-91 36-65 (993)
486 KOG1916 Nuclear protein, conta 86.8 0.32 7E-06 47.9 1.4 63 352-415 192-265 (1283)
487 PF14761 HPS3_N: Hermansky-Pud 86.5 17 0.00037 30.0 13.4 117 166-292 31-165 (215)
488 PF02333 Phytase: Phytase; In 86.2 27 0.00059 32.0 23.8 197 7-235 65-291 (381)
489 PLN02193 nitrile-specifier pro 85.9 34 0.00073 32.9 21.7 154 72-239 228-415 (470)
490 COG3823 Glutamine cyclotransfe 85.9 18 0.00039 29.7 15.4 191 72-280 55-248 (262)
491 PF03022 MRJP: Major royal jel 85.5 25 0.00054 31.0 20.0 145 21-183 35-217 (287)
492 PF11715 Nup160: Nucleoporin N 85.4 4.6 9.9E-05 39.6 8.6 75 117-191 157-258 (547)
493 PF07676 PD40: WD40-like Beta 85.2 3.8 8.2E-05 22.9 4.9 30 149-178 7-38 (39)
494 TIGR03548 mutarot_permut cycli 84.9 29 0.00063 31.2 16.7 67 72-141 123-199 (323)
495 PF12657 TFIIIC_delta: Transcr 84.3 9.9 0.00021 30.5 8.6 31 62-92 86-122 (173)
496 TIGR03606 non_repeat_PQQ dehyd 83.9 39 0.00085 32.0 29.2 56 354-410 368-430 (454)
497 COG4257 Vgb Streptogramin lyas 83.8 27 0.00059 30.0 20.3 150 62-237 104-265 (353)
498 KOG1896 mRNA cleavage and poly 83.7 64 0.0014 34.2 16.9 145 74-234 1047-1213(1366)
499 PF07250 Glyoxal_oxid_N: Glyox 83.5 27 0.00059 29.8 11.6 33 350-384 176-208 (243)
500 COG1520 FOG: WD40-like repeat 83.4 37 0.00081 31.3 19.8 198 11-238 69-272 (370)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-59 Score=385.31 Aligned_cols=321 Identities=19% Similarity=0.256 Sum_probs=288.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
++.|+|++++||+|+.|.++|+||++|.... .+.++|...|.|++|+|||+.||+|+.|
T Consensus 120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---------------------~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---------------------FTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred EEEecCCCceEEecCCCceEEeeccCCCCcc---------------------eeecCCccEEEEEEECCCcchhhccccC
Confidence 4679999999999999999999999977766 7899999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecC---CCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
|+|++||.++|+++..-+.+|+..|++++|.|. +..++|++++.||.++|||+..+.++.. +.+|+.+|+|+.|-
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--LSGHTASVTCVRWG 256 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE--eccCccceEEEEEc
Confidence 999999999999988888999999999999873 3567999999999999999988777655 89999999999997
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc-----------C---------------
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-----------P--------------- 213 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p--------------- 213 (471)
-+| ++++++.|++|++|+...|.+...++. |...|+.++.+ |
T Consensus 257 G~g--liySgS~DrtIkvw~a~dG~~~r~lkG----------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 257 GEG--LIYSGSQDRTIKVWRALDGKLCRELKG----------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred CCc--eEEecCCCceEEEEEccchhHHHhhcc----------cchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 665 799999999999999999988887765 44567777665 2
Q ss_pred ---------CCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCc
Q 012064 214 ---------RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (471)
Q Consensus 214 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (471)
+++..+++|+.|.++.+|+....+ .+...+.+|...|+.+.|+||++++|+++ |..
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--------------KPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccc--------------cchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 223469999999999999976654 34566788999999999999999999999 678
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~ 363 (471)
|++|+-+++ +.+..|.||... |..++| +.|.++|++|+.
T Consensus 391 VkLW~g~tG--------------------------------------k~lasfRGHv~~--VYqvaw-saDsRLlVS~Sk 429 (480)
T KOG0271|consen 391 VKLWDGRTG--------------------------------------KFLASFRGHVAA--VYQVAW-SADSRLLVSGSK 429 (480)
T ss_pred eeeeeCCCc--------------------------------------chhhhhhhccce--eEEEEe-ccCccEEEEcCC
Confidence 999999885 567788999987 999999 999999999999
Q ss_pred CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 364 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
|.++++||+++.++...|.+|.+.|.++.|+|||+.+++|+.|..+++|.
T Consensus 430 DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-54 Score=353.59 Aligned_cols=312 Identities=21% Similarity=0.326 Sum_probs=275.7
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
.+...+.||.++|.|++|+|+|..||+|+.|.++++||+.+..+..+. ++|...|.|++|+| ||+.|++|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsP--Dgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSP--DGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECC--CcchhhccccCCeEE
Confidence 444678899999999999999999999999999999999999998887 89999999999999 999999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEcc-----CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEP-----GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
+||..+++.+. ..+.+|...|++++|.| .. ..+++++.||.++|||+..+.++..+.. |..+|
T Consensus 183 lwdpktg~~~g-~~l~gH~K~It~Lawep~hl~p~~-r~las~skDg~vrIWd~~~~~~~~~lsg----------HT~~V 250 (480)
T KOG0271|consen 183 LWDPKTGQQIG-RALRGHKKWITALAWEPLHLVPPC-RRLASSSKDGSVRIWDTKLGTCVRTLSG----------HTASV 250 (480)
T ss_pred EecCCCCCccc-ccccCcccceeEEeecccccCCCc-cceecccCCCCEEEEEccCceEEEEecc----------Cccce
Confidence 99999988765 34899999999999986 34 4789999999999999999988877765 77799
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc-----------CCC--
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-----------DQS-- 273 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~-- 273 (471)
+|+.|--+ .++++|+.|++|++|+...+.+ .+.+.+|...|+.++.+ |.+
T Consensus 251 TCvrwGG~--gliySgS~DrtIkvw~a~dG~~---------------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 251 TCVRWGGE--GLIYSGSQDRTIKVWRALDGKL---------------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred EEEEEcCC--ceEEecCCCceEEEEEccchhH---------------HHhhcccchheeeeeccchhhhhcccccccccc
Confidence 99999865 4999999999999999988764 34455677777777766 222
Q ss_pred -----------------------CeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccc
Q 012064 274 -----------------------ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (471)
Q Consensus 274 -----------------------~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (471)
..|++++|+ ++++|+....
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~------------------------------------- 356 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS------------------------------------- 356 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-------------------------------------
Confidence 359999976 8999987653
Q ss_pred ccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcE
Q 012064 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 409 (471)
.+++..+.+|... |+.+.| |||++|+|+++-|..|++||..+|+.+..+++|-+.|+.++|+.|.++|++||.|.++
T Consensus 357 kkpi~rmtgHq~l--Vn~V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 357 KKPITRMTGHQAL--VNHVSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred ccchhhhhchhhh--eeeEEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence 4567788899887 999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCC-cccCcchheeehhhHH
Q 012064 410 KILTPNAADR-ATLPTNIEQAMMMTMT 435 (471)
Q Consensus 410 ~iw~~~~~~~-~~~~~~~~~~~~~~~~ 435 (471)
++|++++.+. ..+++|.++++...+.
T Consensus 434 Kvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred EEEEeeeeeecccCCCCCceEEEEEec
Confidence 9999999887 6788899999877654
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-49 Score=331.09 Aligned_cols=287 Identities=22% Similarity=0.311 Sum_probs=260.4
Q ss_pred EeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEec
Q 012064 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (471)
Q Consensus 56 ~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 135 (471)
..-|-+.+|..+.||+|++.||||+.+|.++||+..+.+.+..+ .+|...|.++.|+|..++..+++|+.||++++|++
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 33467899999999999999999999999999999999887777 89999999999999433679999999999999999
Q ss_pred cccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC
Q 012064 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (471)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (471)
.+..++.. +.+|...|..++|+|+| ++|.+++.|.+-++||++++...-.... |...|.+++|+||
T Consensus 249 ~~e~~l~~--l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEG----------Hs~~v~~iaf~~D- 314 (459)
T KOG0272|consen 249 SQETPLQD--LEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEG----------HSKGVFSIAFQPD- 314 (459)
T ss_pred CCCcchhh--hhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcc----------cccccceeEecCC-
Confidence 88877776 89999999999999999 5889999999999999999877655443 6778999999999
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~ 294 (471)
|.++++|+.|..-++||+++++. ...+.+|..+|.+++|+|+|..||+|+ |++++|||++.
T Consensus 315 GSL~~tGGlD~~~RvWDlRtgr~---------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~--- 376 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLRTGRC---------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM--- 376 (459)
T ss_pred CceeeccCccchhheeecccCcE---------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc---
Confidence 78999999999999999999873 345667899999999999999999998 66999999987
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC-CCcEEEEeeCCCeEEEEEcc
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~g~~l~~g~~dg~v~iwd~~ 373 (471)
+.....+.+|.+. |..+.| +| .|.+|++++.|++++||...
T Consensus 377 -----------------------------------r~~ly~ipAH~nl--VS~Vk~-~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 377 -----------------------------------RSELYTIPAHSNL--VSQVKY-SPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred -----------------------------------cccceecccccch--hhheEe-cccCCeEEEEcccCcceeeecCC
Confidence 3456778889887 999999 88 78999999999999999999
Q ss_pred CCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
++.+++.+.||.+.|.+++.+||+++++|++.|.++++|.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999996
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.8e-46 Score=291.16 Aligned_cols=295 Identities=16% Similarity=0.256 Sum_probs=255.3
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeE
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 153 (471)
-+|+++|+|.+|++|...+|.+..++ +...+.|+.+...| +++.|++++. ..||+||+.+++..+...+.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 48999999999999999999999998 56678999999999 9999998875 58999999999887777799999999
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (471)
+++.|..+| +.+++|++||+++|||++...+.+.++ +..+|+++..+|. ..-|++|..+|.|++||+
T Consensus 87 taVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-----------~~spVn~vvlhpn-QteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 87 TAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------HNSPVNTVVLHPN-QTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-----------CCCCcceEEecCC-cceEEeecCCCcEEEEEc
Confidence 999999999 689999999999999999977766665 6678999999998 567889999999999999
Q ss_pred CCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
.+.. |...+.......|.++...|||++++.+. .|+.++|++.+......
T Consensus 154 ~~~~--------------c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~--------------- 204 (311)
T KOG0315|consen 154 GENS--------------CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE--------------- 204 (311)
T ss_pred cCCc--------------cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc---------------
Confidence 9865 33445555678899999999999999887 66999999977433322
Q ss_pred CCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC-eeeEEecCCCcceEEE
Q 012064 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCI 391 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~ 391 (471)
..++.+++.|..- +..+.+ |||++|||+++.|.+++||+.++- +....+++|...++.+
T Consensus 205 -----------------l~P~~k~~ah~~~--il~C~l-SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 205 -----------------LEPVHKFQAHNGH--ILRCLL-SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC 264 (311)
T ss_pred -----------------ceEhhheecccce--EEEEEE-CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee
Confidence 4566778888876 888888 999999999999999999999887 6678889999999999
Q ss_pred EEcCCCCEEEEeecCCcEEEecCCCCCC-cccCcchheeehhhH
Q 012064 392 EPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQAMMMTM 434 (471)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~ 434 (471)
+||.||+||+|++.|+.+++|++..++. .+..+|.+....+++
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999999999999998875 566677766655544
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-48 Score=323.02 Aligned_cols=276 Identities=21% Similarity=0.287 Sum_probs=252.8
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC--CCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~--g~~l~s~ 79 (471)
..++|++++..||||+-+|.+++|+..+...+ ++|.||.+.|.++.|+|. +..+|||
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---------------------~~l~gH~~~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---------------------QTLRGHTSRVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCccee---------------------EEEeccccceeeEEEccCCCccceeee
Confidence 34689999999999999999999999977655 799999999999999997 5789999
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+.||++++|++++..++..+ .+|...|..++|+| +|++|++++.|.+-++||+.++..... ..+|...|.+++|.
T Consensus 238 s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~--QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 238 SADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLL--QEGHSKGVFSIAFQ 312 (459)
T ss_pred ccCCceeeeccCCCcchhhh-hcchhhheeeeecC--CCceeeecccccchhhcccccchhhHh--hcccccccceeEec
Confidence 99999999999988888888 89999999999999 999999999999999999999887765 78999999999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
||| .++++|+.|..-+|||++++.++..+.. |..+|.+++|+|+ |..+++|+.|++++|||++..+.
T Consensus 313 ~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~g----------H~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~- 379 (459)
T KOG0272|consen 313 PDG-SLAATGGLDSLGRVWDLRTGRCIMFLAG----------HIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSE- 379 (459)
T ss_pred CCC-ceeeccCccchhheeecccCcEEEEecc----------cccceeeEeECCC-ceEEeecCCCCcEEEeeeccccc-
Confidence 999 5899999999999999999999887765 6678999999998 89999999999999999998763
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
...+..|..-|+.+.|+| .|.+|++++ |+++++|...+
T Consensus 380 --------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------------- 419 (459)
T KOG0272|consen 380 --------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------------- 419 (459)
T ss_pred --------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--------------------------
Confidence 456778899999999999 788999998 77999999877
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
..+++.+.||.+. |.++.+ ++|+.++++++.|.++++|.
T Consensus 420 ------------~~~~ksLaGHe~k--V~s~Di-s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 ------------WSPLKSLAGHEGK--VISLDI-SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------------cccchhhcCCccc--eEEEEe-ccCCceEEEeccCceeeecc
Confidence 5678889999998 999998 99999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.2e-46 Score=294.96 Aligned_cols=297 Identities=18% Similarity=0.301 Sum_probs=262.2
Q ss_pred eeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 48 ~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
..+++..+.|+||.+.|.++.|++|.+++++++.||.+.|||.-+......+ +-....|..++|+| .+++++.|+-|
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sP--Sg~~VAcGGLd 118 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSP--SGNFVACGGLD 118 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECC--CCCeEEecCcC
Confidence 3455777999999999999999999999999999999999999998887777 56678999999999 99999999999
Q ss_pred CeEEEEecccc--Cc--ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceee
Q 012064 128 GQVRHAQILER--GG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 128 g~i~iwd~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (471)
....||++.+. +. ...+.+.+|.+.+.++.|.+|+ .|++++.|.+..+||+++++....+.. |.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~G----------H~ 186 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHG----------HT 186 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecC----------Cc
Confidence 99999999855 21 2335589999999999999976 489999999999999999999888874 77
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE- 282 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~- 282 (471)
..|.++.++|.+++.+++|+.|+..++||+|.+.. ...+.+|...|+++.|.|+|.-+++|+++
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---------------~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---------------VQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcce---------------eEeecccccccceEEEccCCCeeeecCCCc
Confidence 79999999995589999999999999999998753 34567789999999999999999999965
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
+.++||++... .+..|........|++++| |..|++|++|.
T Consensus 252 tcRlyDlRaD~--------------------------------------~~a~ys~~~~~~gitSv~F-S~SGRlLfagy 292 (343)
T KOG0286|consen 252 TCRLYDLRADQ--------------------------------------ELAVYSHDSIICGITSVAF-SKSGRLLFAGY 292 (343)
T ss_pred eeEEEeecCCc--------------------------------------EEeeeccCcccCCceeEEE-cccccEEEeee
Confidence 89999998753 2333443333334999999 99999999999
Q ss_pred CCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
.|..+.+||.-.++.+..|.+|...|.++..+|||.-++|||.|.+++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999995
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-44 Score=280.94 Aligned_cols=297 Identities=16% Similarity=0.248 Sum_probs=255.0
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
.-+|++++.|.+||+|...+|.+. ++++...+.|+.+.+.||++.||+++. ..|++||
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~---------------------rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD 67 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICS---------------------RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYD 67 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEE---------------------EEEecCccceeeEEEcCCcchhhhccC-CeeEEEE
Confidence 467999999999999999999998 788877899999999999999999887 4799999
Q ss_pred CCCCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEE
Q 012064 90 WKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (471)
Q Consensus 90 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (471)
+.++++ +.++ .+|++.|..+.|.. +|+++++|++||+++|||++...... ...|..+|+++..+|+. ..|+
T Consensus 68 ~~S~np~Pv~t~-e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlhpnQ-teLi 140 (311)
T KOG0315|consen 68 LNSNNPNPVATF-EGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLHPNQ-TELI 140 (311)
T ss_pred ccCCCCCceeEE-eccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccch---hccCCCCcceEEecCCc-ceEE
Confidence 988764 6666 89999999999999 99999999999999999998854433 45588999999999988 4689
Q ss_pred EEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCC
Q 012064 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (471)
+|..+|.|++||+.+..+...+... ....+.++...|| +.+++.+...|..++|++-+.+..
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe---------~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~-------- 202 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPE---------DDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTA-------- 202 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCC---------CCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCcc--------
Confidence 9999999999999988665554322 3357999999999 789999999999999999875422
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCC
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (471)
..+.|...+..|.+.+..+.+|||+++|++++ |.+++||+.++.
T Consensus 203 -s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---------------------------------- 247 (311)
T KOG0315|consen 203 -SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---------------------------------- 247 (311)
T ss_pred -ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----------------------------------
Confidence 22345566778899999999999999999998 558999998763
Q ss_pred cccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEc
Q 012064 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (471)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s 394 (471)
.+....+++|..+ +...+| |.||+||++|+.|+.+++|++..++.++.+.+|.....+++..
T Consensus 248 ---~kle~~l~gh~rW--vWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 ---FKLELVLTGHQRW--VWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ---eeeEEEeecCCce--EEeeee-ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 2344677888877 999999 9999999999999999999999999999999998887777754
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=322.09 Aligned_cols=359 Identities=17% Similarity=0.200 Sum_probs=293.1
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCC--EEEEecC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD--ILISGSD 81 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~--~l~s~~~ 81 (471)
++|+|.+.++++|+.||.+++||+..+.++ +.|+||.+.|.++.|+|+-. .|++|..
T Consensus 111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~t---------------------h~fkG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 111 MAFDPTGTLLATGGADGRVKVWDIKNGYCT---------------------HSFKGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred EEEcCCCceEEeccccceEEEEEeeCCEEE---------------------EEecCCCceEEEEEeCCccchhheeecCC
Confidence 457899999999999999999999988887 79999999999999999764 5899999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc--------------------
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-------------------- 141 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------- 141 (471)
|+++++||+.+..........|.+.|+++.|++ |+..+++++.|..+.+||+.+.+..
T Consensus 170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG 247 (775)
T ss_pred CceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence 999999999876652333478999999999999 8888888888888888887432211
Q ss_pred --------------------------------------------------------------------------------
Q 012064 142 -------------------------------------------------------------------------------- 141 (471)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (471)
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence
Q ss_pred -----------------------------eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeec
Q 012064 142 -----------------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (471)
Q Consensus 142 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 192 (471)
....+.+|+..|.+++...+| .+|++|+.|.++++|.++++........
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a- 405 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVA- 405 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhh-
Confidence 001123477888888866666 5899999999999999855433221111
Q ss_pred ccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC
Q 012064 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (471)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (471)
....|...|.+++++.-+..+|++++.|.++++|++...+.... | ..+........|...|++++.+|+
T Consensus 406 -----~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-----~-~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 406 -----QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-----P-IVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred -----hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----c-ceehhhHHHHhhcccccceEecCC
Confidence 11126678999999888788999999999999999987432211 1 111122345568899999999999
Q ss_pred CCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 273 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
.+++|+++ |.+.++|+++. .....++.||... +.++.|
T Consensus 475 dkLiAT~SqDktaKiW~le~--------------------------------------~~l~~vLsGH~RG--vw~V~F- 513 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQ--------------------------------------LRLLGVLSGHTRG--VWCVSF- 513 (775)
T ss_pred CceEEecccccceeeecccC--------------------------------------ceEEEEeeCCccc--eEEEEe-
Confidence 99999999 45899999985 4567899999987 999999
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC-cccCcchheee
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQAM 430 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~ 430 (471)
+|..+.++++|.|++|+||.+++..+++++.||...|..+.|-.+++.|+|++.||.+++|++.+.++ .++..|.++++
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 67888999999
Q ss_pred hhhHHHHHH
Q 012064 431 MMTMTMMIL 439 (471)
Q Consensus 431 ~~~~~~~~~ 439 (471)
++..+...-
T Consensus 594 aL~~~~~~~ 602 (775)
T KOG0319|consen 594 ALSVSPLLD 602 (775)
T ss_pred EEeecCccc
Confidence 887665433
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-42 Score=294.39 Aligned_cols=405 Identities=14% Similarity=0.145 Sum_probs=301.1
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccc-cc----------------------------------------------
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLS-TR---------------------------------------------- 35 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~---------------------------------------------- 35 (471)
-|.|+|.|-++|+|...|.|||||....+.+ +.
T Consensus 64 VAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei 143 (603)
T KOG0318|consen 64 VAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEI 143 (603)
T ss_pred EEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcccee
Confidence 3679999999999999999999997642222 11
Q ss_pred ---------------cccceecccccceeee------eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 012064 36 ---------------NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER 94 (471)
Q Consensus 36 ---------------~~~~~~~~~~~~~~~~------~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~ 94 (471)
+..+++.+++|....+ +...+++.|...|.|+.|+|||.++|+++.||+|.+||-.+|+
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 1223677777766554 6677888999999999999999999999999999999999999
Q ss_pred eEEEee--cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece-eeeEEEEEEccCCCcEEEEEec
Q 012064 95 VKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-QGRAHKLAIEPGSPHVFYTCGE 171 (471)
Q Consensus 95 ~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~ 171 (471)
.+..+. .+|++.|++++|+| |++.+++++.|.+++|||+.+.+.+.+..+... .+....+.|- .+ .|++.+.
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd--~lItVSl 298 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KD--HLITVSL 298 (603)
T ss_pred EEEEecCCCCccccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CC--eEEEEEc
Confidence 988883 38999999999999 999999999999999999999987766433322 1333445565 22 4799999
Q ss_pred CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcC
Q 012064 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (471)
+|.|.+++.........+.. |...|+++..+|+ +.+|++|+.||.|.-|+..++...
T Consensus 299 ~G~in~ln~~d~~~~~~i~G----------HnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~------------ 355 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISG----------HNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSD------------ 355 (603)
T ss_pred CcEEEEecccCCChhheecc----------cccceeEEEEcCC-CCEEEeeccCceEEEEecCCcccc------------
Confidence 99999999999887766654 6778999999999 589999999999999999887521
Q ss_pred CCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccccc
Q 012064 252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (471)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (471)
...-..|...|.+++-+..+.++.++-|+++++.++..+....... ......|.......++..+......+.....
T Consensus 356 --~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~iv~l~ 432 (603)
T KOG0318|consen 356 --RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLAVLSDGGTAVVACISDIVLLQ 432 (603)
T ss_pred --ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce-eecCCCceeEEEcCCCCEEEEEecCcEEEEe
Confidence 1222567889999999888888888889999999886543222110 1112222233333443333333322211111
Q ss_pred CCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee--EEecCCCcceEEEEEcCCCCEEEEeecCCcE
Q 012064 332 APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (471)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 409 (471)
.........-.....++++ +|+++.++.|++||.|+||.+..+++. ..+..|.++|+++++|||+.+||++...+.+
T Consensus 433 ~~~~~~~~~~~y~~s~vAv-~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 433 DQTKVSSIPIGYESSAVAV-SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred cCCcceeeccccccceEEE-cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 1111111111112567887 999999999999999999999876543 4567899999999999999999999999999
Q ss_pred EEecCCCCCCcc--cCcchheeehhhHHHHHH
Q 012064 410 KILTPNAADRAT--LPTNIEQAMMMTMTMMIL 439 (471)
Q Consensus 410 ~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 439 (471)
.+|++.+.+... -.-|..++..+++++--.
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCCce
Confidence 999999987732 233667777777766433
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-42 Score=270.62 Aligned_cols=286 Identities=17% Similarity=0.214 Sum_probs=234.0
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
+...++++++|.++.+|++..-.. ......+.+.||+..|..++.++||++.++++.|+++++|
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~----------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDI----------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred CCceEEEcccceEEEEEEeccCcc----------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 456799999999999999884322 1335568999999999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC-CcEEE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFY 167 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~ 167 (471)
|+.+++..+.| .+|...|.+++|+| |++.+++|+.|.+|++|++....... ..-..+.+.|.++.|+|+. +..|+
T Consensus 91 Dl~~g~~t~~f-~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck~t-~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 91 DLATGESTRRF-VGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCKYT-IHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EecCCcEEEEE-EecCCceEEEEecC--CCceeecCCCcceeeeeeecccEEEE-EecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999887777 89999999999999 99999999999999999986554332 2222337889999999983 35789
Q ss_pred EEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCC
Q 012064 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (471)
+++.|+++++||+++-+....+.. |...++.++++|| |.++++|+.||.+.+||++.++..
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~g----------h~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~l-------- 227 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIG----------HSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNL-------- 227 (315)
T ss_pred EccCCceEEEEccCCcchhhcccc----------ccccEEEEEECCC-CCEEecCCCCceEEEEEccCCcee--------
Confidence 999999999999999887766553 6678999999999 789999999999999999988732
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCc
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (471)
....+...|.+++|+|+...|+.+.+..|+|||++++.....+......
T Consensus 228 --------ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g----------------------- 276 (315)
T KOG0279|consen 228 --------YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIG----------------------- 276 (315)
T ss_pred --------EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccc-----------------------
Confidence 2234577899999999998999988889999999987665553311100
Q ss_pred ccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
. ..........+++| ++||..|++|-.|+.|++|.+.
T Consensus 277 -------~-s~~~~~~~clslaw-s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 277 -------P-SSKAGDPICLSLAW-SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -------c-ccccCCcEEEEEEE-cCCCcEEEeeecCCcEEEEEee
Confidence 0 00111223778888 9999999999999999999874
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-42 Score=276.30 Aligned_cols=295 Identities=20% Similarity=0.355 Sum_probs=255.5
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE
Q 012064 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (471)
Q Consensus 53 ~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 132 (471)
+...+.+|.+.|+.+.|+|+|.+|||||.|..|.+|++.....-.-.+++|.+.|..+.|.+ |++.+++++.|.+++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCCceEEE
Confidence 34567899999999999999999999999999999996544333334489999999999999 9999999999999999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
||+++++.... .++|..-++.+.-+.-|+.++.+++.|+++++||+++...++.+. ....++++.|.
T Consensus 117 wD~~tG~~~rk--~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------~kyqltAv~f~ 183 (338)
T KOG0265|consen 117 WDAETGKRIRK--HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------NKYQLTAVGFK 183 (338)
T ss_pred Eecccceeeeh--hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----------cceeEEEEEec
Confidence 99999998876 889999999999777788889999999999999999999888775 34478999999
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
.+ +..+.+|+-|+.|++||++.... .....+|...|+.+..+|+|.++.+.+ +.++++||++.
T Consensus 184 d~-s~qv~sggIdn~ikvWd~r~~d~---------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 184 DT-SDQVISGGIDNDIKVWDLRKNDG---------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred cc-ccceeeccccCceeeeccccCcc---------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 88 67889999999999999988753 456778899999999999999999988 77999999875
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeE--eeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT--VKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
-... ..++..+.+|..... ...++| +|+++++.+|+.|..+++
T Consensus 248 ~~p~----------------------------------~R~v~if~g~~hnfeknlL~csw-sp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 248 FAPS----------------------------------QRCVKIFQGHIHNFEKNLLKCSW-SPNGTKITAGSADRFVYV 292 (338)
T ss_pred cCCC----------------------------------CceEEEeecchhhhhhhcceeec-cCCCCccccccccceEEE
Confidence 3211 234667777654332 556677 999999999999999999
Q ss_pred EEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
||......+..+.+|.+.|++++|+|...+|.+++.|.+|++=.
T Consensus 293 wd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 293 WDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99988889999999999999999999999999999999998743
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-41 Score=266.46 Aligned_cols=291 Identities=13% Similarity=0.211 Sum_probs=239.8
Q ss_pred eeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCC-----CceEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKT-----ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
.+..++++|.+.|+.++..+.+ +.+++++.|.++.+|++.. |..++.+ .+|...|..+..++ |+++.++++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~--dg~~alS~s 82 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSS--DGNFALSAS 82 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEcc--CCceEEecc
Confidence 3456899999999999998874 7889999999999998754 5556666 89999999999999 999999999
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.|+++++||+.+++..+. +.+|...|.+++|++++ ..+++|+.|.+|++|+............. +...
T Consensus 83 wD~~lrlWDl~~g~~t~~--f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~---------~~~W 150 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRR--FVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDS---------HREW 150 (315)
T ss_pred ccceEEEEEecCCcEEEE--EEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCC---------CcCc
Confidence 999999999999865544 99999999999999999 57899999999999998765433322210 2558
Q ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCc
Q 012064 206 LNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (471)
Q Consensus 206 v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (471)
|.|+.|+|.. ..+|++++.|+++++||+++.++ .....+|.+.++.++++|||.++++|+ ++.
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------hhccccccccEEEEEECCCCCEEecCCCCce
Confidence 9999999984 46899999999999999998764 344567899999999999999999998 668
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~ 363 (471)
+.+||++.++. +..+ ++... |.+++| +|+.-+|+.+.
T Consensus 216 ~~LwdL~~~k~--------------------------------------lysl-~a~~~--v~sl~f-spnrywL~~at- 252 (315)
T KOG0279|consen 216 AMLWDLNEGKN--------------------------------------LYSL-EAFDI--VNSLCF-SPNRYWLCAAT- 252 (315)
T ss_pred EEEEEccCCce--------------------------------------eEec-cCCCe--EeeEEe-cCCceeEeecc-
Confidence 99999988633 2222 23333 999999 99977776665
Q ss_pred CCeEEEEEccCCeeeEEecC----C-----CcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 364 CGRIFIWKKKGGELIRVIEA----D-----RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 364 dg~v~iwd~~~~~~~~~~~~----h-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+..|+|||+.++..+..++. . .-...+++|++||+.|+++-.|+.|++|.+.
T Consensus 253 ~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 45699999999888776642 1 2235788999999999999999999999875
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-41 Score=269.47 Aligned_cols=278 Identities=21% Similarity=0.284 Sum_probs=240.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
++-++++.+++++++.||.+.|||.-|.... +.+.-....|..++|+|.|+++|.|+.|
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------HAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccccce---------------------eEEecCceeEEEEEECCCCCeEEecCcC
Confidence 4557899999999999999999999877766 4566668899999999999999999999
Q ss_pred CeEEEEECCCC--c---eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 83 RRVILWDWKTE--R---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 83 ~~i~iwd~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
+...||++.+. + .+.+.+.+|++-+.|+.|. |+..|++++.|.+..+||+++++.... +.+|.+.|.+++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~---dD~~ilT~SGD~TCalWDie~g~~~~~--f~GH~gDV~sls 193 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL---DDNHILTGSGDMTCALWDIETGQQTQV--FHGHTGDVMSLS 193 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEc---CCCceEecCCCceEEEEEcccceEEEE--ecCCcccEEEEe
Confidence 99999999854 2 3344458999999999998 567899999999999999999887765 899999999999
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
++|...+.|++|+-|+..++||++.+...+.|.. |...|++++|.|+ +.-|++|+.|++.++||+|..+
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g----------hesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG----------HESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeecc----------cccccceEEEccC-CCeeeecCCCceeEEEeecCCc
Confidence 9995457899999999999999999999999876 6678999999999 7899999999999999999876
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
....++ ......+|++++|+..|++|.+|. +.++.+||.-.
T Consensus 263 ~~a~ys-------------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk------------------------- 304 (343)
T KOG0286|consen 263 ELAVYS-------------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK------------------------- 304 (343)
T ss_pred EEeeec-------------cCcccCCceeEEEcccccEEEeeecCCceeEeeccc-------------------------
Confidence 443322 122356799999999999999877 55899999866
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
.+....+.||.+. |.++.. +|||.-+++|+.|..++||.
T Consensus 305 -------------~e~vg~L~GHeNR--vScl~~-s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 -------------GERVGVLAGHENR--VSCLGV-SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -------------cceEEEeeccCCe--eEEEEE-CCCCcEEEecchhHheeecC
Confidence 3556788899998 999998 99999999999999999994
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.1e-43 Score=298.45 Aligned_cols=296 Identities=19% Similarity=0.292 Sum_probs=257.4
Q ss_pred eeeeEEeccccccEEEEEEcC-CCCEEEEecCCCeEEEEECCC-CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC
Q 012064 51 LGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 128 (471)
-+..+.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++ .+|..+|.+++|++ +|..+++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~--~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNN--CGTSFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccc--cCCeeeeeecce
Confidence 367789999999999999999 889999999999999999976 7777777 89999999999999 999999999999
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.+++||+++++.... +. ....++++.|+|+++++|++|+.|+.|+.||+++++.++.+.. |-..+..
T Consensus 281 ~lKlwDtETG~~~~~--f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------hLg~i~~ 347 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSR--FH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------HLGAILD 347 (503)
T ss_pred eeeeeccccceEEEE--Ee-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------hhhheee
Confidence 999999999988765 22 3456899999999989999999999999999999998887764 5568999
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~ 287 (471)
+.|-++ +.++++++.|+.+++|+.+..-.. ......+.-...++..+|++.+++.-+ ++.|.+|
T Consensus 348 i~F~~~-g~rFissSDdks~riWe~~~~v~i--------------k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 348 ITFVDE-GRRFISSSDDKSVRIWENRIPVPI--------------KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred eEEccC-CceEeeeccCccEEEEEcCCCccc--------------hhhcchhhccCcceecCCCCCeehhhccCceEEEE
Confidence 999998 789999999999999999876422 122222344567899999999999888 6689999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeE
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v 367 (471)
.+..... ......++||.....-..+.| ||||++|++|+.||.+
T Consensus 413 s~~~~~r-----------------------------------~nkkK~feGh~vaGys~~v~f-SpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 413 STVPPFR-----------------------------------LNKKKRFEGHSVAGYSCQVDF-SPDGRTLCSGDSDGKV 456 (503)
T ss_pred ecccccc-----------------------------------cCHhhhhcceeccCceeeEEE-cCCCCeEEeecCCccE
Confidence 8654322 234567889988877888998 9999999999999999
Q ss_pred EEEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEEec
Q 012064 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILT 413 (471)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~ 413 (471)
.+||.++-+++..+++|.+++..+.|+|... .+|+++.||.|++|+
T Consensus 457 ~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999765 899999999999996
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=303.01 Aligned_cols=394 Identities=18% Similarity=0.228 Sum_probs=294.1
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecc-ccccEEEEEEcCCCCEEEEe
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~ 79 (471)
+++....|++.+|++++....+++|++++|+++ +.++. |++||..++|+|.|.+|++|
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~i---------------------rswKa~He~Pvi~ma~~~~g~LlAtg 123 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLI---------------------RSWKAIHEAPVITMAFDPTGTLLATG 123 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHh---------------------HhHhhccCCCeEEEEEcCCCceEEec
Confidence 355677899999999999999999999999888 67787 99999999999999999999
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+.|+.++|||+..+.+...+ ++|.+.|.++.|+|......|++|..|+++++||+.+... ....+..|.+.|++++|.
T Consensus 124 gaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~ 201 (775)
T KOG0319|consen 124 GADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFS 201 (775)
T ss_pred cccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeec
Confidence 99999999999999998888 8999999999999944445689999999999999986654 223378899999999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC--C--CceEEEEeCCCeEEEEEcCC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR--N--ANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~--~~~l~~~~~dg~i~i~d~~~ 235 (471)
+++ ..++++++|..+.+||+.+-+....+...+ .+.++.+-++ | +.++++++.+|.+++||.++
T Consensus 202 ~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-----------~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 202 EDS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYE-----------SLESVVRLREELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred cCC-ceEEEeccCcEEEEeehhhhhhhheechhh-----------heeeEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence 998 578999999999999997766665554322 3455555443 2 34899999999999999876
Q ss_pred CccCCCCCCC------------------------------------------------------C------------CCC
Q 012064 236 YKWDGSTDFG------------------------------------------------------Q------------PAD 249 (471)
Q Consensus 236 ~~~~~~~~~~------------------------------------------------------~------------~~~ 249 (471)
.+........ + ..+
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr 349 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELR 349 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceE
Confidence 6532211000 0 000
Q ss_pred cC----CCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCC----CCCCCccccccccccCCCCCCc-
Q 012064 250 YF----CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP----PPSSPVSTRSEASEMGSDHTSA- 319 (471)
Q Consensus 250 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 319 (471)
.+ ....+..+|...|.++....+|.+|++++ |.++++|.++++..... ...+.......+. +..+..+
T Consensus 350 ~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asff 427 (775)
T KOG0319|consen 350 LYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFF 427 (775)
T ss_pred EEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee--cccCccEE
Confidence 00 00115667888888888667778999999 55899998844332211 1111111111111 1111111
Q ss_pred cCCCCCCccc---------ccCCe------eeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCC
Q 012064 320 ASPSTANTDV---------RIAPQ------VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (471)
Q Consensus 320 ~~~~~~~~~~---------~~~~~------~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h 384 (471)
++.+.+...+ ..... ....|... |++++. +|+.+++|+||.|.+.+||+++.+....++.+|
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd--IN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD--INCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH 504 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhccc--ccceEe-cCCCceEEecccccceeeecccCceEEEEeeCC
Confidence 1111111110 01111 22345555 999998 999999999999999999999999999999999
Q ss_pred CcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC-cccCcchheeehhhH
Q 012064 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQAMMMTM 434 (471)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~ 434 (471)
...|.++.|+|..+.++|+|.|++|+||.+.+..+ .++.+|...+....|
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 99999999999999999999999999999999888 667778776665554
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-42 Score=284.83 Aligned_cols=300 Identities=21% Similarity=0.286 Sum_probs=248.0
Q ss_pred eeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 49 ~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
...+..+.+..|.+.|+-+.||++|++||+++.|.+..+|++..... +...+.+|..+|..+.|+| |+++|++|+.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP--DdryLlaCg~ 289 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP--DDRYLLACGF 289 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC--CCCeEEecCc
Confidence 34466688899999999999999999999999999999998765443 2233379999999999999 9999999999
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
|..+++||+.++...... -.++...+.+.+|.||+ ..+++|+.|+.+..||+.... ....+.. ....|
T Consensus 290 ~e~~~lwDv~tgd~~~~y-~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv---------r~~~v 357 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLY-PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-LGNWEGV---------RDPKV 357 (519)
T ss_pred hHheeeccCCcchhhhhc-ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-hhccccc---------cccee
Confidence 999999999998876542 22356889999999999 568999999999999997654 2222211 23468
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~ 285 (471)
.+++..+| |.++++.+.|..|++|+..+..... ......+|++++.+.+++++.+.- +..++
T Consensus 358 ~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~----------------lise~~~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 358 HDLAITYD-GKYVLLVTVDKKIRLYNREARVDRG----------------LISEEQPITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred EEEEEcCC-CcEEEEEecccceeeechhhhhhhc----------------cccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence 99999999 6788888899999999988754211 122356799999999999877665 66899
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
+||++. ...++.+.||.....+..-+|-.-+..++++|++|+
T Consensus 421 LWDl~e--------------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 421 LWDLEE--------------------------------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred Eeecch--------------------------------------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 999985 466788899988777777787334568999999999
Q ss_pred eEEEEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEEecCCCC
Q 012064 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA 417 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 417 (471)
.|+||+..+|+++.++.||...|++++|+|... ++|++|+||+|+||.+...
T Consensus 463 kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 463 KVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999999999999665 8999999999999998754
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-39 Score=280.39 Aligned_cols=340 Identities=15% Similarity=0.293 Sum_probs=267.1
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec---cccccEEEEEEcCCCCEEEE
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD---KHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~~~~s~~g~~l~s 78 (471)
.++-|+|||.++++.+.||+|.+||-.+|+.+ ..|. +|++.|.+++|+||++.++|
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~v---------------------g~l~~~~aHkGsIfalsWsPDs~~~~T 252 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV---------------------GELEDSDAHKGSIFALSWSPDSTQFLT 252 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcCCCccEE---------------------EEecCCCCccccEEEEEECCCCceEEE
Confidence 46789999999999999999999999999988 3454 89999999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEeecCCC--cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 79 GSDDRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
++.|.+++|||+.+.+++.++..+.+ ..-..+-| ....|++.+.+|.|.+++........ .+.+|...|+++
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW----qkd~lItVSl~G~in~ln~~d~~~~~--~i~GHnK~ITaL 326 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW----QKDHLITVSLSGTINYLNPSDPSVLK--VISGHNKSITAL 326 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEE----eCCeEEEEEcCcEEEEecccCCChhh--eecccccceeEE
Confidence 99999999999999999888865543 33344456 35689999999999999998888544 489999999999
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
..+|++ ..|++|+.||.|.-||..++..-+... ..|...|.+++-+.. ..+++.+.|.++++.++...
T Consensus 327 tv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g---------~~h~nqI~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 327 TVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG---------KGHTNQIKGMAASES--GELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred EEcCCC-CEEEeeccCceEEEEecCCcccccccc---------ccccceEEEEeecCC--CcEEEEecCCeEEEEecccC
Confidence 999999 678999999999999999887654432 116678999998874 35778888999999988655
Q ss_pred ccCCCC--CCC-CCCC-----c------CCCC--cccC--------CCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 237 KWDGST--DFG-QPAD-----Y------FCPP--NLIG--------DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 237 ~~~~~~--~~~-~~~~-----~------~~~~--~~~~--------~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
...... +++ +|.- . .|.. .++. ...-...+++++|++..++.|+ |+++++|.+..
T Consensus 395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 433321 111 1100 0 0000 0000 0122356788889998888887 55899998876
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
... ........|... +++++| |||+.|||+|...+.+.+||
T Consensus 475 ~~l------------------------------------~ee~~~~~h~a~--iT~vay-Spd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 475 DEL------------------------------------KEEAKLLEHRAA--ITDVAY-SPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred Ccc------------------------------------cceeeeecccCC--ceEEEE-CCCCcEEEEeccCCcEEEEE
Confidence 422 222345567766 999998 99999999999999999999
Q ss_pred ccCCeee-EEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 372 KKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 372 ~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+.+.+.. ..+.-|.+.|++++|+|+..++|||+.|.+|.||+++.+..
T Consensus 516 ~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 516 VASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred cccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 9988764 34455999999999999999999999999999999987654
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-41 Score=279.50 Aligned_cols=292 Identities=21% Similarity=0.336 Sum_probs=255.1
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..+.|+|+....+++++|++|++||.++|++. +.++||.+.|..++|+..|++||+++.
T Consensus 112 t~v~~hp~~~~v~~as~d~tikv~D~~tg~~e---------------------~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 112 TRVIFHPSEALVVSASEDATIKVFDTETGELE---------------------RSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred eeeeeccCceEEEEecCCceEEEEEccchhhh---------------------hhhhccccceeEEEEecCccEEEecCC
Confidence 45678999999999999999999999999987 789999999999999999999999999
Q ss_pred CCeEEEEECCCC-ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 82 DRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 82 d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
|-.+++||.++. ++++. ..+|...|.+++|.| .|.++++++.|.+|+.|++.++.++.. +.+|...|..++.+.
T Consensus 171 Dl~~~LWd~~~~~~c~ks-~~gh~h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t--~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKS-LIGHEHGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKT--FPGHSEWVRMVRVNQ 245 (406)
T ss_pred ccchhheeHHHHHHHHHH-hcCcccceeeEEEEe--cCCeeeecccccceeEEecccceeEEe--ccCchHhEEEEEecC
Confidence 988999999874 34333 378999999999999 899999999999999999999988876 999999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
|| .++++++.|.++++|-+.++++...+.. |..++.+++|.|. .. +....+ +++
T Consensus 246 DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~----------hEh~vEci~wap~-~~--~~~i~~--------at~---- 299 (406)
T KOG0295|consen 246 DG-TIIASCSNDQTLRVWVVATKQCKAELRE----------HEHPVECIAWAPE-SS--YPSISE--------ATG---- 299 (406)
T ss_pred Ce-eEEEecCCCceEEEEEeccchhhhhhhc----------cccceEEEEeccc-cc--Ccchhh--------ccC----
Confidence 99 7999999999999999999988777765 5557999999996 21 111000 000
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
.. ..+.++.+++ |++|++||+.++
T Consensus 300 --------------------~~--------~~~~~l~s~SrDktIk~wdv~tg--------------------------- 324 (406)
T KOG0295|consen 300 --------------------ST--------NGGQVLGSGSRDKTIKIWDVSTG--------------------------- 324 (406)
T ss_pred --------------------CC--------CCccEEEeecccceEEEEeccCC---------------------------
Confidence 00 1456888888 668999999884
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCE
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 399 (471)
.++.++.+|.++ |..++| +|.|+||+++.+|+++++||++++++...+..|..-|++++|+.+..+
T Consensus 325 -----------~cL~tL~ghdnw--Vr~~af-~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 325 -----------MCLFTLVGHDNW--VRGVAF-SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY 390 (406)
T ss_pred -----------eEEEEEecccce--eeeeEE-cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence 577889999998 999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCcEEEecC
Q 012064 400 LASSGIESDIKILTP 414 (471)
Q Consensus 400 l~s~~~dg~i~iw~~ 414 (471)
++||+-|.++++|.-
T Consensus 391 VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 391 VVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccccceeeeeec
Confidence 999999999999963
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-40 Score=272.01 Aligned_cols=325 Identities=16% Similarity=0.208 Sum_probs=268.5
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
++-+|+.+++++|+.|-.-.+|+..+|+.. ..+.+|.+.|+++.||.||.+||||+.+|
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFA---------------------GELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcce---------------------eEecCCCCceEEEEEccCceEEEecCCCc
Confidence 456789999999999999999999999977 68999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
.|+||+..++.....+. ..-..+.=+.|+| .+..|++|+.||.+.+|.+.++... +.+.+|+.++++=.|.|+|
T Consensus 129 ~v~v~~~stg~~~~~~~-~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~--kv~~Gh~~~ct~G~f~pdG- 202 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLD-QEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALC--KVMSGHNSPCTCGEFIPDG- 202 (399)
T ss_pred cEEEEEcccCceEEEee-cccCceEEEEecc--cccEEEeecCCCcEEEEECCCccee--eEecCCCCCcccccccCCC-
Confidence 99999999999877773 4456777889999 9999999999999999999876443 4489999999999999999
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (471)
+.++++..||+|++|++.++++...+...+ .....++.++.. +..++.|..++.+++-...+++...-..
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPLHKITQAE---------GLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred ceEEEEecCceEEEEecCCCceeEEecccc---------cCcCCccccccc-cceeEeccCCccEEEEccccceEEEecC
Confidence 578999999999999999998776665332 224567888877 6788899999999888888777543322
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEE---cCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAF---SDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
- ....+...+...+.++.+ +..=.+.|+++ +|+|.|||+...
T Consensus 273 ~-------~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--------------------------- 318 (399)
T KOG0296|consen 273 G-------TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--------------------------- 318 (399)
T ss_pred C-------CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc---------------------------
Confidence 1 112223333444445444 44445677787 899999998753
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCE
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 399 (471)
.++....|... |..+.| -+ ..+|++++.+|.|+.||.++|+++..+.+|...|.+++.+|+.++
T Consensus 319 ------------~~R~~c~he~~--V~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 319 ------------TLRHICEHEDG--VTKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred ------------hhheeccCCCc--eEEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcE
Confidence 33444456665 899999 66 679999999999999999999999999999999999999999999
Q ss_pred EEEeecCCcEEEecCC
Q 012064 400 LASSGIESDIKILTPN 415 (471)
Q Consensus 400 l~s~~~dg~i~iw~~~ 415 (471)
++|+|.|++.+|+++.
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 9999999999999865
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-40 Score=292.42 Aligned_cols=325 Identities=19% Similarity=0.275 Sum_probs=277.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..+.|++.-..||+|-..|...++++..-.++ +.+.--..+|..++|+..|.+||.|+.
T Consensus 269 taa~fH~~t~~lvvgFssG~f~LyelP~f~li---------------------h~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 269 TAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI---------------------HSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred eeeeccCCceEEEEEecCCeeEEEecCCceEE---------------------EEeecccceeeEEEecccCCEEEEcCC
Confidence 45789999999999999999999999854444 677777789999999999999999877
Q ss_pred C-CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 82 D-RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 82 d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
. |.+-||++++...+... ++|...+.+++++| ||+++++|++||.|++||..++-+..+ +..|+..|+.+.|+.
T Consensus 328 klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSp--Dgq~iaTG~eDgKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSP--DGQLIATGAEDGKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTA 402 (893)
T ss_pred ccceEEEEEeeccceeeec-cccccceeeEEECC--CCcEEEeccCCCcEEEEeccCceEEEE--eccCCCceEEEEEEe
Confidence 5 79999999998888777 79999999999999 999999999999999999988877766 899999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC-eEEEEEcCCCccC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRLYDIRKYKWD 239 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~ 239 (471)
.+ +.+++++-||+++.||+...+.-+++..+ .+....|++.+|. |.++..|+.|. .|.+|+++++++
T Consensus 403 ~g-~~llssSLDGtVRAwDlkRYrNfRTft~P---------~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGql- 470 (893)
T KOG0291|consen 403 RG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSP---------EPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQL- 470 (893)
T ss_pred cC-CEEEEeecCCeEEeeeecccceeeeecCC---------CceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCee-
Confidence 99 68999999999999999999988888765 3346789999998 67777777665 499999999985
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
...+.+|.++|.+++|+|++..|++++ |.+|++||+-..
T Consensus 471 --------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s-------------------------- 510 (893)
T KOG0291|consen 471 --------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS-------------------------- 510 (893)
T ss_pred --------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc--------------------------
Confidence 346778999999999999999999999 558999998653
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecC---------------
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--------------- 383 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~--------------- 383 (471)
.....+++-... +..++| +|||+-|++++-||.|.+||.+.+..+..+.+
T Consensus 511 -----------~~~vEtl~i~sd---vl~vsf-rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t 575 (893)
T KOG0291|consen 511 -----------SGTVETLEIRSD---VLAVSF-RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT 575 (893)
T ss_pred -----------CceeeeEeeccc---eeEEEE-cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee
Confidence 112233333222 888998 99999999999999999999987766543322
Q ss_pred -----CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 384 -----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 384 -----h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
.....+.+++|+||.++++|+....|+||++.++-.
T Consensus 576 a~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 576 AENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred hhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 124689999999999999999999999999998755
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.5e-41 Score=274.17 Aligned_cols=297 Identities=20% Similarity=0.307 Sum_probs=258.4
Q ss_pred cceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 46 DLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 46 ~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
+.-..+++.+.+++|.+.|.|+++.|.+++|++|+.|++|+|||+.+|+...++ .+|...|..+++++ .-.|+++++
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~--rHpYlFs~g 212 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSK--RHPYLFSAG 212 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecc--cCceEEEec
Confidence 334456888999999999999999999999999999999999999999998877 89999999999999 899999999
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.|+.|+.||++.++.+.. +.+|-..|.+++.+|.- .++++|+.|.++++||+++...+..+.. |...
T Consensus 213 edk~VKCwDLe~nkvIR~--YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~G----------H~~~ 279 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRH--YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSG----------HTNP 279 (460)
T ss_pred CCCeeEEEechhhhhHHH--hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecC----------CCCc
Confidence 999999999999988876 89999999999999988 5899999999999999999988887765 6668
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEE
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~ 285 (471)
|..+.+.|.+ -.+++|+.|++|++||++.++- .....+|+..+.+++.+|....+++++.+.|+
T Consensus 280 V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt---------------~~tlt~hkksvral~lhP~e~~fASas~dnik 343 (460)
T KOG0285|consen 280 VASVMCQPTD-PQVITGSHDSTVRLWDLRAGKT---------------MITLTHHKKSVRALCLHPKENLFASASPDNIK 343 (460)
T ss_pred ceeEEeecCC-CceEEecCCceEEEeeeccCce---------------eEeeecccceeeEEecCCchhhhhccCCccce
Confidence 8999998874 4688999999999999998863 23456678899999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
-|++..+ ..+..+.+|... ++++.. ..|| ++++|+++|
T Consensus 344 ~w~~p~g--------------------------------------~f~~nlsgh~~i--intl~~-nsD~-v~~~G~dng 381 (460)
T KOG0285|consen 344 QWKLPEG--------------------------------------EFLQNLSGHNAI--INTLSV-NSDG-VLVSGGDNG 381 (460)
T ss_pred eccCCcc--------------------------------------chhhccccccce--eeeeee-ccCc-eEEEcCCce
Confidence 9999875 344557788876 888886 4444 888999999
Q ss_pred eEEEEEccCCeeeEEecC--------CCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 366 RIFIWKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~--------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
.+.+||.++|-..+.... ....|.+.+|...|..|++|..|.+|++|.-+.
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 999999998865544421 235689999999999999999999999998654
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-40 Score=278.86 Aligned_cols=323 Identities=18% Similarity=0.259 Sum_probs=267.2
Q ss_pred CCCCCCCc-EEEEecCCCeEEEEEccc--CccccccccceecccccceeeeeeeEEecc----ccccEEEEEEcCCCCEE
Q 012064 4 ASNNNNNK-RARTSVDKALVDVWLREL--GQLSTRNFALRRRASEDLVLRLGIYAKLDK----HRGCVNTVSFNTDGDIL 76 (471)
Q Consensus 4 ~~~~~~~~-~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~~~~s~~g~~l 76 (471)
.+++|-.. .+++|+.|.+.++|++.. +.... ...++....+.+ -...|++++|+.+|.+|
T Consensus 184 ~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~-------------q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 184 CAWNPLRDGLLASGSGDSTARIWNLLENSNIGST-------------QLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred EecCchhhhhhhccCCccceeeeeehhhccccch-------------hhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45677665 899999999999999874 11110 000111111112 24679999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
|+|+.||.+++|+.. |..+..+ ..|+++|.+++|+. +|.||++++.|+++.+||..++...+. +..|..+-.++
T Consensus 251 atG~~~G~~riw~~~-G~l~~tl-~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~--f~~~s~~~lDV 324 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD-GNLISTL-GQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQ--FEFHSAPALDV 324 (524)
T ss_pred EEeecCcEEEEEecC-chhhhhh-hccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEe--eeeccCCccce
Confidence 999999999999954 6666666 78999999999999 999999999999999999988776655 66788777788
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
.|-.+. -|++++.|+.|+++.+....++..+.. |..+|.++.|+|. +.+|++++.|+++++|.....
T Consensus 325 dW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~G----------H~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 325 DWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIG----------HHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred EEecCc--eEeecCCCceEEEEEecCCCcceeeec----------ccCceEEEEECCC-CceEEEecCCCeeEeeecCCC
Confidence 898766 489999999999999999998888875 6678999999999 789999999999999998765
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC---------eEEEee-CCcEEEEecCCCCCCCCCCCCCcccc
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---------LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~ 306 (471)
.. .+-+..|...|..+.|+|.|. .+++++ +.++++||+..+
T Consensus 392 ~~---------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------- 442 (524)
T KOG0273|consen 392 NS---------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------- 442 (524)
T ss_pred cc---------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--------------
Confidence 32 334556788899999999752 556555 779999999874
Q ss_pred ccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCc
Q 012064 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH 386 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~ 386 (471)
.++..|..|..+ |.+++| +|+|+|+|+|+.||.|.+|+.++++.++.+.+. +
T Consensus 443 ------------------------v~i~~f~kH~~p--Vysvaf-S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~ 494 (524)
T KOG0273|consen 443 ------------------------VPIHTLMKHQEP--VYSVAF-SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G 494 (524)
T ss_pred ------------------------ceeEeeccCCCc--eEEEEe-cCCCcEEEecCCCCeeEeccccchheeEeecCC-C
Confidence 567788888887 999999 999999999999999999999999999998764 5
Q ss_pred ceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 387 VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 69999999999999999999999998864
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=251.72 Aligned_cols=294 Identities=19% Similarity=0.245 Sum_probs=237.4
Q ss_pred eeeeEEeccccccEEEEEEcCC-CCEEEEecCCCeEEEEECCC---CceEEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~-g~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
+...+.+++|.+.+..++|+|- |..||+||.|+.|++|+... -.+...+..+|+..|.+++|+| .|++|++++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEEEeec
Confidence 4456889999999999999998 88999999999999999875 3344444568999999999999 9999999999
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
|.++.||.-..++......+.+|+..|.+++|+++| ++|+++++|+.+-+|.+..+.........+. |...|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~-------HtqDV 153 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQE-------HTQDV 153 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeecc-------ccccc
Confidence 999999998777666667799999999999999999 6899999999999999986655444333322 66789
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FI 284 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i 284 (471)
..+.|+|. ..+|++++.|.+|++|+-.. .. ......+.+|...|.+++|+|.|..|++++++ ++
T Consensus 154 K~V~WHPt-~dlL~S~SYDnTIk~~~~~~ddd-------------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 154 KHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDD-------------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred cEEEEcCC-cceeEEeccCCeEEEEeecCCCC-------------eeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 99999998 67999999999999998763 21 11234456677799999999999999999955 89
Q ss_pred EEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC
Q 012064 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d 364 (471)
+||...... -..|... +..+.| . ...|++++.|
T Consensus 220 ~Iw~~~~~~------------------------------------------~~~~sr~--~Y~v~W-~--~~~IaS~ggD 252 (312)
T KOG0645|consen 220 SIWRLYTDL------------------------------------------SGMHSRA--LYDVPW-D--NGVIASGGGD 252 (312)
T ss_pred EeeeeccCc------------------------------------------chhcccc--eEeeee-c--ccceEeccCC
Confidence 999864321 0112222 777888 4 4589999999
Q ss_pred CeEEEEEccCC------eee-EEecCCCcceEEEEEcCC-CCEEEEeecCCcEEEecCC
Q 012064 365 GRIFIWKKKGG------ELI-RVIEADRHVVNCIEPHPH-STVLASSGIESDIKILTPN 415 (471)
Q Consensus 365 g~v~iwd~~~~------~~~-~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 415 (471)
+.|++|.-... +++ ..-..|...|+++.|.|. .++|++++.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999986542 111 123568889999999995 6799999999999999875
No 24
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-40 Score=292.07 Aligned_cols=375 Identities=17% Similarity=0.248 Sum_probs=309.1
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+..+++..+||+|..||.|+||+.+++..+ -++.||..+|+++.|+..|..||+||.|+
T Consensus 71 l~~~~d~l~lAVGYaDGsVqif~~~s~~~~---------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt 129 (888)
T KOG0306|consen 71 LRSSDDILLLAVGYADGSVQIFSLESEEIL---------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDT 129 (888)
T ss_pred eeccCCcceEEEEecCceEEeeccCCCcee---------------------eeecccccceEEEEEcccCceEeecCCCc
Confidence 445688889999999999999999977555 68999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee--------------------
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-------------------- 143 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------------- 143 (471)
.|.+||+-...-..++ .+|+..|+..-|.. +.+++++++.|+.|++||+.++.+..+
T Consensus 130 ~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt 206 (888)
T KOG0306|consen 130 DIIVWDLVGEEGLFRL-RGHKDSITQALFLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVT 206 (888)
T ss_pred cEEEEEeccceeeEEe-ecchHHHhHHhccC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEE
Confidence 9999999877776777 89999999999987 788999999999999999976554300
Q ss_pred --------------------------------------------------------------------------------
Q 012064 144 -------------------------------------------------------------------------------- 143 (471)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (471)
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 012064 144 -------------------------------------------------------------------------------- 143 (471)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (471)
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~ 366 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN 366 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
....+|...|.+++++.+. .++..+..+.+++|+..+.++++++.+. .+.+..|.|- +.++++|.
T Consensus 367 i~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kciRTi~~~------------y~l~~~Fvpg-d~~Iv~G~ 431 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKCIRTITCG------------YILASKFVPG-DRYIVLGT 431 (888)
T ss_pred eeeccchhheeEEEeecCc--eeeeecCCCcEEEEEccCcceeEEeccc------------cEEEEEecCC-CceEEEec
Confidence 0112366778888888876 3455556778999999999999988652 6889999996 78999999
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCC-----CC-
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG-----PN- 296 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~-----~~- 296 (471)
..|.+.+||+....+. .....|.+.|++++.+||++.+++++ |.+|++||..--.. ..
T Consensus 432 k~Gel~vfdlaS~~l~---------------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 432 KNGELQVFDLASASLV---------------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred cCCceEEEEeehhhhh---------------hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 9999999999887643 34557899999999999999999998 55899999753221 00
Q ss_pred ----CCCCCCccccccccccCCCCCCccCCCCCCccc------ccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCe
Q 012064 297 ----PPPSSPVSTRSEASEMGSDHTSAASPSTANTDV------RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 297 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~ 366 (471)
.-..........+..++||++.+++.-.+.... .+....+.||.-+ |.||.. +||++.+++|+.|..
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP--V~smDI-S~DSklivTgSADKn 573 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKN 573 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc--eeEEec-cCCcCeEEeccCCCc
Confidence 011222334455677899999999887776543 3444566789887 999998 999999999999999
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC-cccCcchheeehhhHH
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQAMMMTMT 435 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~ 435 (471)
|+||-+.-|.+.+.+-+|.+.|.++.|-|+..++.++|.|+.|+-||-..-+. ..+.+|..++++.++.
T Consensus 574 VKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred eEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 99999999999999999999999999999999999999999999999887655 7888999988876654
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.3e-38 Score=281.10 Aligned_cols=372 Identities=17% Similarity=0.251 Sum_probs=293.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
++.|||+|+++|+|. ...+.||... ++.. +....+.+.+++.+|...|.++.|+.|.++|++|+.|
T Consensus 101 ~i~fSPng~~fav~~-gn~lqiw~~P-~~~~------------~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD 166 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGC-GNLLQIWHAP-GEIK------------NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRD 166 (893)
T ss_pred eEEECCCCcEEEEEe-cceeEEEecC-cchh------------cccCcceEeeeecCCccceeEEEeccCCceEEecccc
Confidence 467999999999987 5689999976 3322 1233667788999999999999999999999999999
Q ss_pred CeEEEEECCCCceE-EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc-----------------------c
Q 012064 83 RRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----------------------R 138 (471)
Q Consensus 83 ~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------------------~ 138 (471)
-++++|.++..+.. ...+.+|+..|...-|.. +...+++.+.||.+.+|.... +
T Consensus 167 ~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~ 244 (893)
T KOG0291|consen 167 LSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG 244 (893)
T ss_pred ceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence 99999999766552 233489999999999998 999999999999999997751 0
Q ss_pred Cc-c----------------------------------------------------------------------------
Q 012064 139 GG-V---------------------------------------------------------------------------- 141 (471)
Q Consensus 139 ~~-~---------------------------------------------------------------------------- 141 (471)
+. .
T Consensus 245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred hhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Confidence 10 0
Q ss_pred -----------------eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeee
Q 012064 142 -----------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 142 -----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (471)
.....++|...+.+++++||| .++++|++||.|++||...+-+..++.. |..
T Consensus 325 g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFte----------Hts 393 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTE----------HTS 393 (893)
T ss_pred cCCccceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEecc----------CCC
Confidence 000012378889999999999 5899999999999999999999888875 777
Q ss_pred eeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC--
Q 012064 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-- 282 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-- 282 (471)
.|+.+.|+.. ++.+++++-||+|+.||+...+. ........+.+..+++..|.|.+++.|+.+
T Consensus 394 ~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrN--------------fRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 394 GVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRN--------------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred ceEEEEEEec-CCEEEEeecCCeEEeeeecccce--------------eeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 8999999998 78999999999999999987652 223333445678899999999999999866
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
.|++|++.+| ..+..+.||.++ |.+++| +|+|..|++|+
T Consensus 459 ~IfvWS~qTG--------------------------------------qllDiLsGHEgP--Vs~l~f-~~~~~~LaS~S 497 (893)
T KOG0291|consen 459 EIFVWSVQTG--------------------------------------QLLDILSGHEGP--VSGLSF-SPDGSLLASGS 497 (893)
T ss_pred EEEEEEeecC--------------------------------------eeeehhcCCCCc--ceeeEE-ccccCeEEecc
Confidence 6999999985 567788999998 999999 99999999999
Q ss_pred CCCeEEEEEccCCe-eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccCcch----------heeeh
Q 012064 363 DCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNI----------EQAMM 431 (471)
Q Consensus 363 ~dg~v~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~----------~~~~~ 431 (471)
.|.+||+||+-... .+.++ .+...+..++|+|||+-|+.+..||.|.+||.+........... +.+.+
T Consensus 498 WDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred ccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence 99999999986543 33344 46677999999999999999999999999999865443221111 11111
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHhee
Q 012064 432 ------MTMTMMILMMTTMMMVVAVVAAAVVML 458 (471)
Q Consensus 432 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
-.|+++....+.++++.+.-++.+-+|
T Consensus 577 ~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred hhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 235556666666666666666666555
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=246.25 Aligned_cols=284 Identities=21% Similarity=0.312 Sum_probs=245.4
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
.+.+..|+++|..+.|+-||+|.++++.|.+|++|+...|.+++++ .+|..+|..++.+. |+..+++|+.|..+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~--Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSS--DNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccc--cccccccCCCCceEEEE
Confidence 4678899999999999999999999999999999999999999998 89999999999998 99999999999999999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc--ceeeeecccCCcCcceeeeeeEEEEE
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
|+.+++...+ +.+|...|+.+.|+.+. .++++|+.|..+++||.++... ++.+.. ....|.++..
T Consensus 87 DV~TGkv~Rr--~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v 153 (307)
T KOG0316|consen 87 DVNTGKVDRR--FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDV 153 (307)
T ss_pred EcccCeeeee--cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh----------hcCceeEEEe
Confidence 9999988776 99999999999999988 6899999999999999987643 333321 3346788887
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecC
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~ 290 (471)
.. +.+++|+.||+++.||++.+++... .-..+|++++|+++++....++ +.++++.|-.
T Consensus 154 ~~---heIvaGS~DGtvRtydiR~G~l~sD-----------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 154 AE---HEIVAGSVDGTVRTYDIRKGTLSSD-----------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred cc---cEEEeeccCCcEEEEEeecceeehh-----------------hcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 64 5799999999999999999874322 1245799999999999877776 7899999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
++ +.+..+.||.+...-...++ ......+++|++||.|++|
T Consensus 214 tG--------------------------------------klL~sYkGhkn~eykldc~l-~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 214 TG--------------------------------------KLLKSYKGHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred hh--------------------------------------HHHHHhcccccceeeeeeee-cccceeEEeccCCceEEEE
Confidence 85 56678889998877777777 7888899999999999999
Q ss_pred EccCCeeeEEecCCCcc-eEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 371 KKKGGELIRVIEADRHV-VNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 371 d~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
|+.+...+..+..|... |.+++++|.-..++++. ++.+..|.
T Consensus 255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99999999999988887 89999999988777775 45566664
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-38 Score=269.24 Aligned_cols=277 Identities=19% Similarity=0.348 Sum_probs=239.9
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
++.++++.+|.+||+|+.||.++||+.. |.++ .+|..|.++|.++.|+.+|+||++++
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~---------------------~tl~~HkgPI~slKWnk~G~yilS~~ 295 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKD-GNLI---------------------STLGQHKGPIFSLKWNKKGTYILSGG 295 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecC-chhh---------------------hhhhccCCceEEEEEcCCCCEEEecc
Confidence 3567899999999999999999999988 6666 57889999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.|+++.+||..+|+....+ .-|..+-.++.|- +...+++++.|+.|+++.+....++.+ +.+|.++|.++.|+|
T Consensus 296 vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t--~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKT--FIGHHGEVNALKWNP 369 (524)
T ss_pred CCccEEEEeccCceEEEee-eeccCCccceEEe---cCceEeecCCCceEEEEEecCCCccee--eecccCceEEEEECC
Confidence 9999999999999987777 6788887889998 567899999999999999988777766 888999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC--------CceEEEEeCCCeEEEEE
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--------ANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--------~~~l~~~~~dg~i~i~d 232 (471)
.+ .+|++++.|++++||.+........+.. |...|..+.|+|.| +..+++++.|++|++||
T Consensus 370 tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~----------Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 370 TG-SLLASCSDDGTLKIWSMGQSNSVHDLQA----------HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred CC-ceEEEecCCCeeEeeecCCCcchhhhhh----------hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 99 6999999999999999888776665554 66688999999874 34789999999999999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (471)
+..+.. ...+..|..+|.+++|+|+|+++++|+ ++.|.+|+.+++
T Consensus 439 v~~gv~---------------i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~------------------- 484 (524)
T KOG0273|consen 439 VESGVP---------------IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG------------------- 484 (524)
T ss_pred ccCCce---------------eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch-------------------
Confidence 998763 334567899999999999999999999 779999999874
Q ss_pred cCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
...+.+.+... |..++| +.+|.+|..+-.|+.+++.|+.
T Consensus 485 -------------------~l~~s~~~~~~---Ifel~W-n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 485 -------------------KLVKSYQGTGG---IFELCW-NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -------------------heeEeecCCCe---EEEEEE-cCCCCEEEEEecCCCceEEEec
Confidence 33444444433 899999 9999999999999999999874
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-40 Score=274.15 Aligned_cols=282 Identities=19% Similarity=0.302 Sum_probs=240.5
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
.-+|..+.|.|+|+.|++|+..|.+.+|+..+-.. ..++..|..+|.++.|++ ++.++++|+.+|.|++|+..-+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEecccchhhh
Confidence 46899999999999999999999999999754333 334578999999999999 999999999999999999765543
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (471)
... ...|...|++++|+|++ ..|++++.||+|+|||....+....+.. |.-.|.++.|+|. ..+++
T Consensus 173 k~~--~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~G----------HgwdVksvdWHP~-kgLia 238 (464)
T KOG0284|consen 173 KII--QAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRG----------HGWDVKSVDWHPT-KGLIA 238 (464)
T ss_pred HHh--hHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheecc----------CCCCcceeccCCc-cceeE
Confidence 321 33455899999999987 5789999999999999998887766654 6668999999999 67999
Q ss_pred EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCC
Q 012064 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~ 299 (471)
+++.|..|++||.++++.+ .....|+..|..+.|+|++.+|++++.+ .+++||+++
T Consensus 239 sgskDnlVKlWDprSg~cl---------------~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-------- 295 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCL---------------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-------- 295 (464)
T ss_pred EccCCceeEeecCCCcchh---------------hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH--------
Confidence 9999999999999998743 2345678999999999999999999955 799999985
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC-CCcEEEEeeCCCeEEEEEccCCeee
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELI 378 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~g~~l~~g~~dg~v~iwd~~~~~~~ 378 (471)
.+.+..+++|+.. ++++.| +| ...+|.+|+.||.|..|.+...+++
T Consensus 296 ------------------------------mkEl~~~r~Hkkd--v~~~~W-hP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 296 ------------------------------MKELFTYRGHKKD--VTSLTW-HPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ------------------------------hHHHHHhhcchhh--heeecc-ccccccceeeccCCCceEEEeccccccc
Confidence 4567788899887 999999 66 4568889999999999999755555
Q ss_pred EEe-cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 379 RVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 379 ~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
..+ .+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 343 ~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 343 GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 544 5799999999999999999999999999999865
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.4e-40 Score=272.76 Aligned_cols=278 Identities=17% Similarity=0.280 Sum_probs=232.4
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.++.+.|+|++|++|+..|...+|+..+ +.....++.|..+|.++.|+++|.++++|+.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~---------------------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTS---------------------FNFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCce---------------------eeHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 4567889999999999999999999752 2223457899999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
+|.|++|+..-. .++.+...|...|.+++|+| ++..+++|++||+|+|||....+.... +.+|.-.|.+++|+|.
T Consensus 159 gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 159 GGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHPT 233 (464)
T ss_pred CceEEecccchh-hhHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCCc
Confidence 999999997643 34555355669999999999 999999999999999999877666544 8999999999999998
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
. .++++++.|..|++||.+++.++..+.. |...|..+.|+|+ +++|++++.|..+++||+++.+.
T Consensus 234 k-gLiasgskDnlVKlWDprSg~cl~tlh~----------HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkE--- 298 (464)
T KOG0284|consen 234 K-GLIASGSKDNLVKLWDPRSGSCLATLHG----------HKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKE--- 298 (464)
T ss_pred c-ceeEEccCCceeEeecCCCcchhhhhhh----------ccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHH---
Confidence 8 5899999999999999999999887654 6678999999998 69999999999999999996552
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
.....+|+..++++.|+|-. .+|++++ |+.+..|.+...++
T Consensus 299 ------------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p------------------------- 341 (464)
T KOG0284|consen 299 ------------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP------------------------- 341 (464)
T ss_pred ------------HHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc-------------------------
Confidence 23456788999999999955 4566655 78999999874221
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
....-.+|... |++++| +|-|..|++|+.|.++++|..
T Consensus 342 ------------~~~i~~AHd~~--iwsl~~-hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 342 ------------LGEIPPAHDGE--IWSLAY-HPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ------------ccCCCcccccc--eeeeec-cccceeEeecCCCcceeeecc
Confidence 12222345554 999999 999999999999999999975
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-37 Score=274.39 Aligned_cols=286 Identities=25% Similarity=0.416 Sum_probs=242.3
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
+++++|.++|.+++|+|++++|++++.||.+++|++.+++....+ ..|...+..+.|+| +++++++++.+|.+++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECC--CCCEEEEEcCCCeEEEEE
Confidence 467799999999999999999999999999999999988766665 68889999999999 889999999999999999
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
+.+++.... +..|...+.++.|++++ .++++++.++.+++||+++++....+.. +...+.+++|+|+
T Consensus 80 ~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~ 146 (289)
T cd00200 80 LETGECVRT--LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVNSVAFSPD 146 (289)
T ss_pred cCcccceEE--EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEEEEEEcCc
Confidence 987655544 67788899999999997 5777777799999999998776665542 4457999999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
+.++++++.++.+++||++..+.. .....+...+.++.|+|+++.+++++ ++.+++||+..+.
T Consensus 147 -~~~l~~~~~~~~i~i~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 147 -GTFVASSSQDGTIKLWDLRTGKCV---------------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred -CCEEEEEcCCCcEEEEEccccccc---------------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 678888888999999999865532 22334567899999999998777766 7799999997632
Q ss_pred CCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
....+..|... +.++.| +|++.++++++.||.|++||+.
T Consensus 211 --------------------------------------~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 211 --------------------------------------CLGTLRGHENG--VNSVAF-SPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred --------------------------------------eecchhhcCCc--eEEEEE-cCCCcEEEEEcCCCcEEEEEcC
Confidence 22333345544 889998 9999999999889999999999
Q ss_pred CCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
+++....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999999999999996
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=288.43 Aligned_cols=297 Identities=23% Similarity=0.406 Sum_probs=250.0
Q ss_pred eeeEEeccc-cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC
Q 012064 52 GIYAKLDKH-RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (471)
Q Consensus 52 ~~~~~l~~h-~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 128 (471)
.+...+.+| ...|.++.|+++|++|++++.++.+++|+....+ ....+ .+|...|.+++|+| +++++++++.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~--d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSP--DGSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECC--CCcEEEEecCCc
Confidence 445666565 7899999999999999999999999999997777 55555 78999999999999 999999999999
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
+|++||+..... ..+.+.+|...|++++|+|++ +++++|+.|++|++||++++++...+.. |...|.+
T Consensus 226 tiriwd~~~~~~-~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~----------hs~~is~ 293 (456)
T KOG0266|consen 226 TLRIWDLKDDGR-NLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKG----------HSDGISG 293 (456)
T ss_pred eEEEeeccCCCe-EEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeec----------cCCceEE
Confidence 999999944322 224488999999999999999 7999999999999999999999888876 6668999
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc-ceEEEEEcCCCCeEEEeeCC-cEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIYL 286 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~-~i~i 286 (471)
++|+++ +++|++++.|+.|++||+.++... +...+...... .++++.|+|++++++++..+ .+++
T Consensus 294 ~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~ 360 (456)
T KOG0266|consen 294 LAFSPD-GNLLVSASYDGTIRVWDLETGSKL------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKL 360 (456)
T ss_pred EEECCC-CCEEEEcCCCccEEEEECCCCcee------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEE
Confidence 999999 789999999999999999988621 00111112222 69999999999999999955 8999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce-eEeeeeeeeCCCCcEEEEeeCCC
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
||+..+ ..+..+.+|... ..+.+... +++++++++|+.|+
T Consensus 361 w~l~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 361 WDLRSG--------------------------------------KSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSEDG 401 (456)
T ss_pred EEccCC--------------------------------------cceeeecccCCcceeEecccc-cCCCCeEEEEeCCc
Confidence 999875 344555566553 22445555 78999999999999
Q ss_pred eEEEEEccCCeeeEEecCC-CcceEEEEEcCCCCEEEEee--cCCcEEEecCC
Q 012064 366 RIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 415 (471)
.|++||+.++..+..+.+| ...+..++++|..+++++++ .|+.+++|..+
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999999999 88999999999999999998 68999999865
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.8e-37 Score=306.44 Aligned_cols=292 Identities=16% Similarity=0.285 Sum_probs=231.7
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCC----c----eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE----R----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~----~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 128 (471)
+..|.+.|.+++|+|+|++||+|+.|+.|+|||.... . ....+ .+...+.+++|+|. ++.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSY-IKSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccC-CCCEEEEEeCCC
Confidence 4569999999999999999999999999999997532 1 12222 34568999999873 478999999999
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
+|++||+.+++.... +.+|...|++++|+|.+..+|++|+.|+.|++||++++.....+. ....+.+
T Consensus 556 ~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------~~~~v~~ 622 (793)
T PLN00181 556 VVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------TKANICC 622 (793)
T ss_pred eEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------cCCCeEE
Confidence 999999987765544 788999999999997444689999999999999999887766654 2235889
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~ 287 (471)
+.|++.++.+|++|+.||.|++||+++.+. +.....+|...|.++.|. ++.+|++++ |+.|++|
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------------~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKL--------------PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 999766589999999999999999986531 122344678889999997 566777776 6799999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeE
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v 367 (471)
|+....... ....+..+.+|... +..+.| +|++++|++|+.|+.|
T Consensus 688 d~~~~~~~~--------------------------------~~~~l~~~~gh~~~--i~~v~~-s~~~~~lasgs~D~~v 732 (793)
T PLN00181 688 DLSMSISGI--------------------------------NETPLHSFMGHTNV--KNFVGL-SVSDGYIATGSETNEV 732 (793)
T ss_pred eCCCCcccc--------------------------------CCcceEEEcCCCCC--eeEEEE-cCCCCEEEEEeCCCEE
Confidence 987531100 02345677888776 778888 9999999999999999
Q ss_pred EEEEccCCeeeEEe-------------cCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 368 FIWKKKGGELIRVI-------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 368 ~iwd~~~~~~~~~~-------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
++|+......+..+ ..|...|.+++|+|++.+|++++.||.|+||++
T Consensus 733 ~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 733 FVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99997655433221 234567999999999999999999999999986
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8e-39 Score=288.51 Aligned_cols=280 Identities=20% Similarity=0.363 Sum_probs=234.4
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
.++..-...++|..|++|+..||.|-.|..|++|.+...+ ++.+ + +. .+.+ .+=+.+.|-.+.+.|
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l-k-~~------~~l~-----~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL-K-DA------SDLS-----NIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc-c-ch------hhhc-----cccccccchhhhhcc
Confidence 3444445679999999999999999999999999987543 2333 1 11 1111 111223333355555
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
-.+.... ..+.+|.++|....|+|+. ++|+++++|+++|+|.+.+......++. |..+|..+.|+|.
T Consensus 438 ~~~~~~~--~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~G----------H~~PVwdV~F~P~ 504 (707)
T KOG0263|consen 438 DDSSGTS--RTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKG----------HLAPVWDVQFAPR 504 (707)
T ss_pred ccCCcee--EEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecC----------CCcceeeEEecCC
Confidence 4444333 3489999999999999999 6899999999999999999998888774 6678999999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCC
Q 012064 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGL 293 (471)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~ 293 (471)
|.+||+++.|++-++|.....+ |..++.+|.+.|.|+.|+|+..|+++|+.+ ++++||+.++
T Consensus 505 -GyYFatas~D~tArLWs~d~~~---------------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G- 567 (707)
T KOG0263|consen 505 -GYYFATASHDQTARLWSTDHNK---------------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG- 567 (707)
T ss_pred -ceEEEecCCCceeeeeecccCC---------------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-
Confidence 8999999999999999987643 567788899999999999999999999955 8999999884
Q ss_pred CCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
..++.|.||..+ |.+++| ||+|++|++|++||.|.+||+.
T Consensus 568 -------------------------------------~~VRiF~GH~~~--V~al~~-Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 568 -------------------------------------NSVRIFTGHKGP--VTALAF-SPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred -------------------------------------cEEEEecCCCCc--eEEEEE-cCCCceEeecccCCcEEEEEcC
Confidence 567899999997 999999 9999999999999999999999
Q ss_pred CCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
+++++..+.+|++.|.++.||.||..||+++.|++|++||+....
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999999999999999999999999997543
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.8e-38 Score=257.77 Aligned_cols=285 Identities=20% Similarity=0.319 Sum_probs=243.0
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.++++.|.+.++++|+.|++|+|||+.+|++. .++.||-..|..+++|+-..||.+++.
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---------------------ltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLK---------------------LTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEE---------------------EeecchhheeeeeeecccCceEEEecC
Confidence 45778999999999999999999999999987 689999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|+.|+.||++..+.++.+ .+|-..|+|++..| .-..|++|+.|.++++||+++...+.. +.+|..+|..+.+.|.
T Consensus 214 dk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhP--Tldvl~t~grDst~RvWDiRtr~~V~~--l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHP--TLDVLVTGGRDSTIRVWDIRTRASVHV--LSGHTNPVASVMCQPT 288 (460)
T ss_pred CCeeEEEechhhhhHHHh-ccccceeEEEeccc--cceeEEecCCcceEEEeeecccceEEE--ecCCCCcceeEEeecC
Confidence 999999999999999888 79999999999999 899999999999999999999887765 9999999999999998
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
++ .+++|+.|++|++||++.++....+.. |...+.+++.+|. .+.|++++.| .|+-|++..+....
T Consensus 289 dp-qvit~S~D~tvrlWDl~agkt~~tlt~----------hkksvral~lhP~-e~~fASas~d-nik~w~~p~g~f~~- 354 (460)
T KOG0285|consen 289 DP-QVITGSHDSTVRLWDLRAGKTMITLTH----------HKKSVRALCLHPK-ENLFASASPD-NIKQWKLPEGEFLQ- 354 (460)
T ss_pred CC-ceEEecCCceEEEeeeccCceeEeeec----------ccceeeEEecCCc-hhhhhccCCc-cceeccCCccchhh-
Confidence 86 479999999999999999988877764 6668999999998 6888888877 59999998876432
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
.+.+|..-|+.++.+.||-++..+..+.+..||.+++...+.....
T Consensus 355 --------------nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~-------------------- 400 (460)
T KOG0285|consen 355 --------------NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTI-------------------- 400 (460)
T ss_pred --------------ccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccccc--------------------
Confidence 2556788899999999986666555778999999987655442210
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
..+..+....+ |.+.+| +..|..|++|..|.+|++|.-.
T Consensus 401 ---------vqpGSl~sEag---I~as~f-Dktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 401 ---------VQPGSLESEAG---IFASCF-DKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ---------ccCCccccccc---eeEEee-cccCceEEeccCCcceEEEecc
Confidence 11112222222 888888 9999999999999999999743
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-37 Score=281.32 Aligned_cols=260 Identities=21% Similarity=0.271 Sum_probs=219.7
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccc----cccceecccccce------eeeeeeEEeccccccEEEEEEc
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTR----NFALRRRASEDLV------LRLGIYAKLDKHRGCVNTVSFN 70 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~l~~h~~~V~~~~~s 70 (471)
+..+.|++++++||.|..|..|++|.+...++.+- ....+-.++.|-. ..-...+++-||.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 35678999999999999999999999984332211 0111111111111 1113446699999999999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee
Q 012064 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 71 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
|+.++|++++.|+++|+|.+.+..++..+ ++|..+|+++.|+| .|-|+++++.|++.++|......+... +.+|.
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRi--faghl 535 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRI--FAGHL 535 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhh--hcccc
Confidence 99999999999999999999999998887 79999999999999 999999999999999999888776655 88999
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
+.|.|+.|+|+. .++++|+.|.++++||..+|..++.+.. |..+|.+++|+|+ |.+|++|+.||.|.+
T Consensus 536 sDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------H~~~V~al~~Sp~-Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 536 SDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTG----------HKGPVTALAFSPC-GRYLASGDEDGLIKI 603 (707)
T ss_pred cccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecC----------CCCceEEEEEcCC-CceEeecccCCcEEE
Confidence 999999999999 5789999999999999999999998865 6779999999998 799999999999999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
||+.++++. ....+|.+.|.++.|+.+|..||+++ |.+|++||+...
T Consensus 604 WDl~~~~~v---------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLV---------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcch---------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999997643 34556689999999999999999998 558999998764
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=237.96 Aligned_cols=282 Identities=17% Similarity=0.288 Sum_probs=219.8
Q ss_pred CCCCCC-CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEe-ccccccEEEEEEcCCCCEEEEecC
Q 012064 4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 4 ~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
++++|. |..||+|+.|+.||||+...+. .+.+...+ .+|+..|.+++|+|.|++||+|+.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGD------------------SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCC------------------cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 567887 8899999999999999988432 22333444 379999999999999999999999
Q ss_pred CCeEEEEECCCC--ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-eeeEeeceeeeEEEEEE
Q 012064 82 DRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 82 d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~ 158 (471)
|.++.||.-..+ +++..+ .+|...|.+++|++ +|++|++|+.|+.+-||.+...... ....+..|...|..+.|
T Consensus 82 D~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATL-EGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred cceEEEeecCCCceeEEeee-eccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence 999999986644 344444 89999999999999 9999999999999999999865443 34568899999999999
Q ss_pred ccCCCcEEEEEecCCeEEEEeccC-C--ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRT-G--AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
+|.. .+|++++.|.+|++|+-.. + ++.+.+.. +...|.+++|+|. |..|++++.|+++++|....
T Consensus 159 HPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g----------~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 159 HPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG----------HENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC----------ccceEEEEEecCC-CceEEEecCCcceEeeeecc
Confidence 9988 5899999999999998763 3 23444432 4457999999998 68999999999999999763
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
. +...|..++..+.|. +| .|++++ ++.|++|..........
T Consensus 227 ~-------------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~----------------- 268 (312)
T KOG0645|consen 227 D-------------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPS----------------- 268 (312)
T ss_pred C-------------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCch-----------------
Confidence 2 223456789999999 44 666665 77899997653200000
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC-CcEEEEeeCCCeEEEEEcc
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-g~~l~~g~~dg~v~iwd~~ 373 (471)
-......-..|... |+++.| .|. .+.|++|+.||.|++|.+.
T Consensus 269 --------------~~l~~~~~~aHe~d--VNsV~w-~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 --------------WNLLAKKEGAHEVD--VNSVQW-NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --------------HHHHHhhhcccccc--cceEEE-cCCCCCceeecCCCceEEEEEec
Confidence 01111233345554 999999 894 6799999999999999874
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.9e-39 Score=258.75 Aligned_cols=291 Identities=19% Similarity=0.312 Sum_probs=249.8
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+++.|+||+++|++|+-||-|.+||..+|++... .+++-...+.-|..+|.|+.||.|...||+|+.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------LkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------LKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhh-------------hhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence 4678999999999999999999999999998741 122333456678999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
||.|++|.+.+|.++++|...|+..|+|+.|+. |+..+++++.|.++++--+.+++.... +.+|...|+...|.++
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKE--frGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKE--FRGHSSYVNEATFTDD 359 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHH--hcCccccccceEEcCC
Confidence 999999999999999999889999999999999 999999999999999999999998876 8999999999999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
| +.+++++.||+|++|+.++.++...++... ...+|+++-.-|.++..++++....++++-++...-
T Consensus 360 G-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~--------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv---- 426 (508)
T KOG0275|consen 360 G-HHIISASSDGTVKVWHGKTTECLSTFKPLG--------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV---- 426 (508)
T ss_pred C-CeEEEecCCccEEEecCcchhhhhhccCCC--------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE----
Confidence 9 578999999999999999999998887543 445788888889888889999888888888775321
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
|.+ |+...
T Consensus 427 ----------------------Vrs--fsSGk------------------------------------------------ 434 (508)
T KOG0275|consen 427 ----------------------VRS--FSSGK------------------------------------------------ 434 (508)
T ss_pred ----------------------Eee--eccCC------------------------------------------------
Confidence 111 11100
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (471)
-++ + ...+.+. +|.|.++++.++|+.++-|.+.+|++...+..|...|..++-+|..+.||
T Consensus 435 --------------REg--G--dFi~~~l-SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 435 --------------REG--G--DFINAIL-SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred --------------ccC--C--ceEEEEe-cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence 000 0 1333444 99999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcEEEec
Q 012064 402 SSGIESDIKILT 413 (471)
Q Consensus 402 s~~~dg~i~iw~ 413 (471)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.4e-38 Score=258.72 Aligned_cols=266 Identities=18% Similarity=0.294 Sum_probs=222.0
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
|...+++|..|.+|+|||.++-+++ +.+.||++.|.|+.| +.+.+++|+.|.+|++|
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~---------------------~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECL---------------------KILTGHTGSVLCLQY--DERVIVSGSSDSTVRVW 262 (499)
T ss_pred cchhhhcccccCceEEeccccHHHH---------------------HhhhcCCCcEEeeec--cceEEEecCCCceEEEE
Confidence 3456899999999999999977766 689999999999999 46699999999999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-eeeEeeceeeeEEEEEEccCCCcEEE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFY 167 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (471)
|+++|+++.++ .+|...|..+.|+ +.++++++.|.++.+||+.....+ ....+.+|...|+.+.|+. ++++
T Consensus 263 Dv~tge~l~tl-ihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIV 334 (499)
T KOG0281|consen 263 DVNTGEPLNTL-IHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV 334 (499)
T ss_pred eccCCchhhHH-hhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEE
Confidence 99999998887 6899999999995 479999999999999999876543 2345789999999999975 4789
Q ss_pred EEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCC
Q 012064 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (471)
+++.|.+|++|++.+.+.+..+.. |...|.|+.+. +.++++|+.|.+|++||+..+.
T Consensus 335 sASgDRTikvW~~st~efvRtl~g----------HkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~---------- 391 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLNG----------HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA---------- 391 (499)
T ss_pred EecCCceEEEEeccceeeehhhhc----------ccccceehhcc---CeEEEecCCCceEEEEeccccH----------
Confidence 999999999999999999888765 44456666654 6788999999999999987653
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCc
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (471)
T Consensus 392 -------------------------------------------------------------------------------- 391 (499)
T KOG0281|consen 392 -------------------------------------------------------------------------------- 391 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee---------eEEecCCCcceEEEEEcCCCC
Q 012064 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL---------IRVIEADRHVVNCIEPHPHST 398 (471)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~---------~~~~~~h~~~v~~~~~s~~~~ 398 (471)
+++.++||..- |.++.| |.+.+++|+.||+|++||+..+.. +..+..|++.|..+.| |..
T Consensus 392 ----cLRvLeGHEeL--vRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~f 460 (499)
T KOG0281|consen 392 ----CLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEF 460 (499)
T ss_pred ----HHHHHhchHHh--hhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cce
Confidence 34556677665 788887 567899999999999999876643 3455679999999999 567
Q ss_pred EEEEeecCCcEEEecCCCCCC
Q 012064 399 VLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 399 ~l~s~~~dg~i~iw~~~~~~~ 419 (471)
.+++++.|.+|.|||+..+..
T Consensus 461 qIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEeccCCCeEEEEEcCCCCc
Confidence 899999999999999987654
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-37 Score=252.44 Aligned_cols=286 Identities=17% Similarity=0.269 Sum_probs=241.7
Q ss_pred ceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 47 LVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 47 ~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
...+.++.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+ ++|...+.+++|+. .|+++++++.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a--~Gk~l~tcSs 170 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDA--SGKYLATCSS 170 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEec--CccEEEecCC
Confidence 34455778889999999999999999999999999999999999999996665 89999999999999 9999999999
Q ss_pred CCeEEEEecccc-CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 127 DGQVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 127 dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
|=.+++||..+. ++. +.+.+|...|.++.|-|.| ..+++++.|.+|+.|++.++-++..+.. +...
T Consensus 171 Dl~~~LWd~~~~~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~----------h~ew 237 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPG----------HSEW 237 (406)
T ss_pred ccchhheeHHHHHHHH--HHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccC----------chHh
Confidence 988999999774 333 3378899999999999999 5789999999999999999999988875 4558
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEE
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~ 285 (471)
|..+..+.| |.++++++.|.++++|-+.+++. ......|+-+|.+++|-|...+
T Consensus 238 vr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~---------------k~~lR~hEh~vEci~wap~~~~---------- 291 (406)
T KOG0295|consen 238 VRMVRVNQD-GTIIASCSNDQTLRVWVVATKQC---------------KAELREHEHPVECIAWAPESSY---------- 291 (406)
T ss_pred EEEEEecCC-eeEEEecCCCceEEEEEeccchh---------------hhhhhccccceEEEEecccccC----------
Confidence 899999998 79999999999999999998752 2345667889999999986421
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
... ....+ ....++++++++.|+
T Consensus 292 -----------------------------------------------~~i-~~at~---------~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 292 -----------------------------------------------PSI-SEATG---------STNGGQVLGSGSRDK 314 (406)
T ss_pred -----------------------------------------------cch-hhccC---------CCCCccEEEeecccc
Confidence 000 00000 022467999999999
Q ss_pred eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc-ccCcchheeeh
Q 012064 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQAMM 431 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~ 431 (471)
+|++||+.++.++.++.+|...|..++|+|.|+||+|+.+|+++++||++++++. .+..|..-+..
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 9999999999999999999999999999999999999999999999999998884 44444433333
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=265.84 Aligned_cols=295 Identities=22% Similarity=0.329 Sum_probs=257.0
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
+..+++..|+..|.++.|+|....++++-.+|.+.|||.++...++.+ .-..-+|.+..|-+ ..+++++|++|..|+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfia--RknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIA--RKNWIVTGSDDMQIR 80 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeee--ccceEEEecCCceEE
Confidence 445677789999999999999999999999999999999999988888 56778999999999 899999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEE
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
+|+..+.+.+.. +..|.+-|.+++.+|..| .+++++.|..|++||.+.+ .+.+.+.. |...|.+++
T Consensus 81 Vfnynt~ekV~~--FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeG----------H~HyVMqv~ 147 (794)
T KOG0276|consen 81 VFNYNTGEKVKT--FEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEG----------HEHYVMQVA 147 (794)
T ss_pred EEecccceeeEE--eeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcC----------cceEEEEEE
Confidence 999999888766 999999999999999997 6799999999999999876 44455543 555899999
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC--CeEEEeeCC-cEEEE
Q 012064 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDE-FIYLF 287 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~-~i~i~ 287 (471)
|+|.+.+.+++++-|++|++|.+.... +...+.+|...|+++.+-+.| .+|++|+|+ .+++|
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~---------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPH---------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCC---------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 999999999999999999999997653 234556889999999999866 489999977 79999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeE
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v 367 (471)
|..+ ..++++++||... |..+.| +|.-..+++|++||++
T Consensus 213 DyQt--------------------------------------k~CV~TLeGHt~N--vs~v~f-hp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 213 DYQT--------------------------------------KSCVQTLEGHTNN--VSFVFF-HPELPIIISGSEDGTV 251 (794)
T ss_pred ecch--------------------------------------HHHHHHhhccccc--ceEEEe-cCCCcEEEEecCCccE
Confidence 9987 5788999999987 888888 9999999999999999
Q ss_pred EEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+||+..+.++...+.-.-+++++++-.+.++.++.|.+.|.|.+ ++-..++
T Consensus 252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP 302 (794)
T KOG0276|consen 252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEP 302 (794)
T ss_pred EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCC
Confidence 99999999998888888889999999998888888876666544 4444444
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=276.61 Aligned_cols=309 Identities=19% Similarity=0.306 Sum_probs=256.5
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..++|+|...+++++-..|.|++||..=+.++ .+|..|.++|..++|+|++.++++||.
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli---------------------~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---------------------DRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHH---------------------hhhhccCCccceeeecCCCCeEEecCC
Confidence 45799999999999999999999999977777 689999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|..|+||+.++.+++.++ .+|-.-|..+.|++ .-.+++++|+|.+|+||+..+++++.. +.+|...|.|..|+|.
T Consensus 72 DykIkVWnYk~rrclftL-~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iav--ltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAV--LTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ccEEEEEecccceehhhh-ccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEE--EecCceEEEeeccCCc
Confidence 999999999999998888 79999999999999 999999999999999999999998876 9999999999999998
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
. .++++++-|.+|++||+..-+....-.. . .... +.-.+.+..+ .|..|-
T Consensus 147 E-DlIVSaSLDQTVRVWDisGLRkk~~~pg----~-----~e~~---~~~~~~~~dL--fg~~Da--------------- 196 (1202)
T KOG0292|consen 147 E-DLIVSASLDQTVRVWDISGLRKKNKAPG----S-----LEDQ---MRGQQGNSDL--FGQTDA--------------- 196 (1202)
T ss_pred c-ceEEEecccceEEEEeecchhccCCCCC----C-----chhh---hhccccchhh--cCCcCe---------------
Confidence 7 5899999999999999875433211110 0 0000 0000000001 122222
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCcc
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
..+.+..+|...|+-++|+|.-.++++|+|+ .|++|.....+
T Consensus 197 ----------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--------------------------- 239 (1202)
T KOG0292|consen 197 ----------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--------------------------- 239 (1202)
T ss_pred ----------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc---------------------------
Confidence 1245667889999999999999999999977 79999987532
Q ss_pred CCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEE
Q 012064 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL 400 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 400 (471)
.+.+.+..||.+. |.++-| +|...++++.++|++|+|||+...+.+++++...+.-+.++-+|..+++
T Consensus 240 ---------aWEvDtcrgH~nn--Vssvlf-hp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLf 307 (1202)
T KOG0292|consen 240 ---------AWEVDTCRGHYNN--VSSVLF-HPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLF 307 (1202)
T ss_pred ---------ceeehhhhcccCC--cceEEe-cCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCccee
Confidence 4667788899987 999998 9999999999999999999999999999998778899999999999988
Q ss_pred EEeecCCcEEEecCCC
Q 012064 401 ASSGIESDIKILTPNA 416 (471)
Q Consensus 401 ~s~~~dg~i~iw~~~~ 416 (471)
+.| .|+-+.+|.++.
T Consensus 308 AAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 308 AAG-HDSGMIVFKLER 322 (1202)
T ss_pred eee-cCCceEEEEEcc
Confidence 766 566677777763
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-36 Score=278.46 Aligned_cols=282 Identities=25% Similarity=0.402 Sum_probs=231.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.+.|+++|+.+++++.|+.+++|+.++++. .+.+.+.+|...|.+++|+|+++++++++.|
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc-------------------hhhccccccccceeeeEECCCCcEEEEecCC
Confidence 357899999999999999999999976651 1125678999999999999999999999999
Q ss_pred CeEEEEECC-CCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 83 RRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 83 ~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
++|+|||+. .+..++.+ .+|...|++++|+| +++.+++|+.|++|++||+++++.... +.+|.+.|.+++|+++
T Consensus 225 ~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~--l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRK--LKGHSDGISGLAFSPD 299 (456)
T ss_pred ceEEEeeccCCCeEEEEe-cCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEe--eeccCCceEEEEECCC
Confidence 999999994 44666666 79999999999999 999999999999999999999777655 9999999999999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCcc--ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
+ +.+++++.|+.|++||+.++.. ...+..... .. .++++.|+|+ +.++++++.|+.+++||++.....
T Consensus 300 ~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~-~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 300 G-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN-------SA-PVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred C-CEEEEcCCCccEEEEECCCCceeeeecccCCCC-------CC-ceeEEEECCC-CcEEEEecCCCeEEEEEccCCcce
Confidence 9 5789999999999999999984 333332211 22 6899999998 789999999999999999987643
Q ss_pred CCCCCCCCCCcCCCCcccCCCc--cceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
.. ...+.. ..+.+...++.++++++++ ++.|++|++.++
T Consensus 370 ~~--------------~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~------------------------ 411 (456)
T KOG0266|consen 370 GT--------------YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG------------------------ 411 (456)
T ss_pred ee--------------ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc------------------------
Confidence 22 111112 2455556688999999999 558999999873
Q ss_pred CCccCCCCCCcccccCCeeeecC-CceeEeeeeeeeCCCCcEEEEee--CCCeEEEEEcc
Q 012064 317 TSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKK 373 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~g~~l~~g~--~dg~v~iwd~~ 373 (471)
..+..+.+| ... +..+.+ +|..+++++++ .|+.+++|...
T Consensus 412 --------------~~~~~l~~h~~~~--~~~~~~-~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 --------------GILQRLEGHSKAA--VSDLSS-HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --------------chhhhhcCCCCCc--eecccc-CCCcCeeeecCcCCCceEEEecCC
Confidence 445667777 443 788888 99999999988 68999999753
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=241.67 Aligned_cols=290 Identities=20% Similarity=0.261 Sum_probs=246.5
Q ss_pred EEeccccccEEEEEEcC---CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 55 AKLDKHRGCVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~---~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
..-.||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.+| .+|++.|++..... +...-++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~--na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNK--NATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCc--hhhhhhhhcccchhh
Confidence 45679999999999986 8999999999999999999999999999 79999999999987 778888999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccce-eeeecccCCcCcceeeeeeEEEE
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
+||.-++..+.. ..|...|.+++|+.|. +.|++|+.+..+++||++..+... .+. + +...|..+.
T Consensus 85 vw~a~tgdelhs---f~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~--------g--htg~Ir~v~ 150 (334)
T KOG0278|consen 85 VWDAVTGDELHS---FEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEIS--------G--HTGGIRTVL 150 (334)
T ss_pred hhhhhhhhhhhh---hhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhc--------C--CCCcceeEE
Confidence 999988887664 3588899999999998 568999999999999998765322 222 1 666899999
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecC
Q 012064 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~ 290 (471)
|... .+.+++++.|++||+||.+++...+.+.+ +.+|+++..+++|++|..+..+.|..||..
T Consensus 151 wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------~s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 151 WCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred Eecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------CCCCcceeeccCCCEEEEecCceeEEeccc
Confidence 9987 57888889999999999999986654433 466899999999999999988899999987
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
+-..+ +.+ ..+..|.+... +|+...+++|++|..++.|
T Consensus 214 sf~~l--------------------------------------Ks~---k~P~nV~SASL-~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 214 SFGLL--------------------------------------KSY---KMPCNVESASL-HPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred cccce--------------------------------------eec---cCccccccccc-cCCCceEEecCcceEEEEE
Confidence 73222 222 22223777777 9999999999999999999
Q ss_pred EccCCeeeEEe-cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 371 KKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 371 d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
|..+|+.+..+ ++|.++|.++.|+|||...++||+||+|++|....++..
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999998886 899999999999999999999999999999998876553
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-35 Score=257.44 Aligned_cols=265 Identities=15% Similarity=0.212 Sum_probs=225.4
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccc---------------cccceecccccceeee------eeeEEeccc
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTR---------------NFALRRRASEDLVLRL------GIYAKLDKH 60 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~~~~~~------~~~~~l~~h 60 (471)
.++.++|..+.++++-.+|.+.|||.++...+.. +-..++.|++|..++. +.++.+..|
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 4577999999999999999999999998776644 1223788888887776 778899999
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
.+.|.|++.+|...+++|+|.|-+|++||++.+-.......+|..-|.+++|+|. |.+.+++++-|++|++|.+.+..+
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCC
Confidence 9999999999999999999999999999998776555555999999999999994 889999999999999999988877
Q ss_pred ceeeEeeceeeeEEEEEEccCC-CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 141 VETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
..+ +.+|...|+++.+-+.+ +-.+++|+.|.++++||..+..+++++.. |...|..+.|+|. -.++
T Consensus 176 nfT--l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG----------Ht~Nvs~v~fhp~-lpii 242 (794)
T KOG0276|consen 176 NFT--LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG----------HTNNVSFVFFHPE-LPII 242 (794)
T ss_pred cee--eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc----------ccccceEEEecCC-CcEE
Confidence 766 89999999999998755 23689999999999999999999998875 6668999999998 6799
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~ 295 (471)
++|++||++++|...+.++...+.+ .-..+++++-.+.+..++.|.|....+..+....+.
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~---------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~ 303 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNY---------------GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPA 303 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhc---------------CCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCc
Confidence 9999999999999988776544333 356799999999888899998877666666554433
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-34 Score=232.73 Aligned_cols=298 Identities=23% Similarity=0.420 Sum_probs=240.9
Q ss_pred eeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC--CC
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DG 128 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg 128 (471)
++..+.+..-.+.|.++.|+++|.+|++++.|.+++|||..++..+..+ ..++-.+..++|.. ....++.++. |.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth--~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTH--HSNTVIHSSTKEDD 80 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEec--CCceEEEccCCCCC
Confidence 3444566667889999999999999999999999999999999998888 55667888899987 6677777666 88
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
+||..++.+++.+.- +.+|...|.+++.+|-+ ..+++++.|++|++||++..++...+... .-..
T Consensus 81 tIryLsl~dNkylRY--F~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~~pi 145 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRY--FPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------GRPI 145 (311)
T ss_pred ceEEEEeecCceEEE--cCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC------------CCcc
Confidence 999999999988866 99999999999999998 57999999999999999988877666542 2356
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~ 287 (471)
.+|+|+ |-++|++.....|++||+|.... .|...+.+.. ......+.+.|+|||++++.+. .+.+++.
T Consensus 146 ~AfDp~-GLifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 146 AAFDPE-GLIFALANGSELIKLYDLRSFDK-------GPFTTFSITD---NDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred eeECCC-CcEEEEecCCCeEEEEEecccCC-------CCceeEccCC---CCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 899998 78888888888999999998652 2333332221 3456789999999999877766 5579999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEe-eeeeeeCCCCcEEEEeeCCCe
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV-KGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~g~~l~~g~~dg~ 366 (471)
|.-.|. ....+.++.....+ ...+| +||++++++|+.||+
T Consensus 215 DAf~G~--------------------------------------~~~tfs~~~~~~~~~~~a~f-tPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 215 DAFDGT--------------------------------------VKSTFSGYPNAGNLPLSATF-TPDSKFVLSGSDDGT 255 (311)
T ss_pred EccCCc--------------------------------------EeeeEeeccCCCCcceeEEE-CCCCcEEEEecCCCc
Confidence 987753 34455555443222 34455 999999999999999
Q ss_pred EEEEEccCCeeeEEecC-CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 367 IFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
|.+|++++++.+..+++ +.+++.++.|+|.-.+++|++ ..+.+|=....+
T Consensus 256 i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 256 IHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDA 306 (311)
T ss_pred EEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccccc
Confidence 99999999999999998 688999999999888888775 678888776543
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-36 Score=235.53 Aligned_cols=287 Identities=17% Similarity=0.225 Sum_probs=232.9
Q ss_pred EeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEec
Q 012064 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (471)
Q Consensus 56 ~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 135 (471)
.++||..+++.+.++.+|.+|.+++.|.+..||-..+|+.+.++ .+|++.|+|+...- +.+.+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~--~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDW--DSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecC--CcceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999998899999998 89999999999998 9999999999999999999
Q ss_pred cccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe-----cCCeEEEEeccCCc-------cceeeeecccCCcCcceee
Q 012064 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----EDGLVQHFDLRTGA-------ATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~ 203 (471)
++++.+.. + ....+|..+.|++++. +++.+. ..+.|.++|++... +...+.. +.
T Consensus 82 ~tGk~la~--~-k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t----------~~ 147 (327)
T KOG0643|consen 82 ETGKQLAT--W-KTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT----------PD 147 (327)
T ss_pred CCCcEEEE--e-ecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC----------Cc
Confidence 99998765 3 3567899999999994 555543 34689999998443 2222222 44
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~ 282 (471)
..++.+.|.|- +..|++|.+||.|..||.++++.. ......|...|+.++++||..++++++ |.
T Consensus 148 skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~--------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 148 SKITSALWGPL-GETIIAGHEDGSISIYDARTGKEL--------------VDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred cceeeeeeccc-CCEEEEecCCCcEEEEEcccCcee--------------eechhhhccccccccccCCcceEEecccCc
Confidence 57899999998 689999999999999999997532 233345677999999999999999999 55
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
+.++||..+ ...++++.... ++++.++ +|...+++.|+
T Consensus 213 takl~D~~t--------------------------------------l~v~Kty~te~---PvN~aai-sP~~d~VilgG 250 (327)
T KOG0643|consen 213 TAKLVDVRT--------------------------------------LEVLKTYTTER---PVNTAAI-SPLLDHVILGG 250 (327)
T ss_pred cceeeeccc--------------------------------------eeeEEEeeecc---cccceec-ccccceEEecC
Confidence 899999987 34444554433 3888888 89877777765
Q ss_pred CCCe--------------EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 363 DCGR--------------IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 363 ~dg~--------------v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
.... -++|++-..+.+..+++|-++|++++|+|+|+..+||++||.|++..++.
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 3211 23444444456678899999999999999999999999999999987654
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-35 Score=244.75 Aligned_cols=320 Identities=15% Similarity=0.176 Sum_probs=252.5
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE
Q 012064 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (471)
Q Consensus 53 ~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 132 (471)
....|..|++.|.+++.+|+.++++||+.|..-.||++.+++....+ .+|+..|.++.|+. +|.+|++|+.+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSH--DGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEcc--CceEEEecCCCccEEE
Confidence 45789999999999999999999999999999999999999987777 89999999999999 9999999999999999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
|+..++..... +...-..+.-+.|+|.+ .+|++|+.||.+.+|.+.++...+.+.. +..++++=.|.
T Consensus 133 ~~~stg~~~~~--~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~G----------h~~~ct~G~f~ 199 (399)
T KOG0296|consen 133 FKVSTGGEQWK--LDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSG----------HNSPCTCGEFI 199 (399)
T ss_pred EEcccCceEEE--eecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecC----------CCCCccccccc
Confidence 99988876654 44455678889999988 6899999999999999999766666654 66688999999
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
|+ |++++++..||+|++|++.+++.... +.........++.++..+..+..++ ++.+++.+..+
T Consensus 200 pd-GKr~~tgy~dgti~~Wn~ktg~p~~~--------------~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 200 PD-GKRILTGYDDGTIIVWNPKTGQPLHK--------------ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred CC-CceEEEEecCceEEEEecCCCceeEE--------------ecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 99 78999999999999999999863221 1112234456777888887777777 45677777666
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce-eEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
++....... ..+.....+... ..|-.+.+ +..-.+.|+|+-||+|.||
T Consensus 265 gKVv~~~n~------------------------------~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 265 GKVVNCNNG------------------------------TVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred ceEEEecCC------------------------------CCccccccchhhhhhhhhccc-ccccchhhcccccceEEEE
Confidence 554333220 001111111111 11444444 5666788999999999999
Q ss_pred EccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC-cccCcchheeehhhHHH
Q 012064 371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQAMMMTMTM 436 (471)
Q Consensus 371 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~ 436 (471)
|+...++...+ .|..+|+.+.|-+ ..+|++++.||.|+.||.+++++ ....+|...+..+...+
T Consensus 314 D~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 314 DLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred ecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC
Confidence 99887766655 4888999999998 78999999999999999999987 56788888887766544
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.4e-36 Score=256.40 Aligned_cols=277 Identities=19% Similarity=0.234 Sum_probs=231.1
Q ss_pred CCCCC-CCcEEEEecCCCeEEEEEccc-CccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 4 ASNNN-NNKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 4 ~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+-+-| .+.+|++|+.|+.|+||++-. ++++ +++.||..+|..++|+++|..++++|.
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l---------------------rtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL---------------------RTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCccee---------------------hhhhcchhhhhhhhccccCCeeeeeec
Confidence 33445 789999999999999999885 5555 899999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
|+.|++||+++|+++.++. ....++|+.|.| ++ +.+++|+.|+.|+.||+++++.++. +..|-+.|..+.|-+
T Consensus 279 D~~lKlwDtETG~~~~~f~--~~~~~~cvkf~p--d~~n~fl~G~sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH--LDKVPTCVKFHP--DNQNIFLVGGSDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVD 352 (503)
T ss_pred ceeeeeeccccceEEEEEe--cCCCceeeecCC--CCCcEEEEecCCCcEEEEeccchHHHHH--HHhhhhheeeeEEcc
Confidence 9999999999999998884 345789999999 77 8899999999999999999998876 888999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
++ ..+++++.|+.+++|+.+.+..++..... ......++..+|. +.+++.-+.|..|.+|.+...-.
T Consensus 353 ~g-~rFissSDdks~riWe~~~~v~ik~i~~~---------~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r-- 419 (503)
T KOG0282|consen 353 EG-RRFISSSDDKSVRIWENRIPVPIKNIADP---------EMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFR-- 419 (503)
T ss_pred CC-ceEeeeccCccEEEEEcCCCccchhhcch---------hhccCcceecCCC-CCeehhhccCceEEEEecccccc--
Confidence 99 57899999999999999988766554432 2234678999998 68999999999999999754311
Q ss_pred CCCCCCCCCcCCCCcccCCCc--cceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
......+.+|. +.-..+.|||||++|++|+ +|.+.+||.++
T Consensus 420 ----------~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt-------------------------- 463 (503)
T KOG0282|consen 420 ----------LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT-------------------------- 463 (503)
T ss_pred ----------cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh--------------------------
Confidence 12233444443 4557789999999999998 77999999987
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC-CcEEEEeeCCCeEEEEE
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-g~~l~~g~~dg~v~iwd 371 (471)
...+..++.|... +..+.| +|. ...+|+++.||.|++||
T Consensus 464 ------------~kl~~~lkah~~~--ci~v~w-HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 ------------TKLVSKLKAHDQP--CIGVDW-HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------------hhhhhccccCCcc--eEEEEe-cCCCcceeEecccCceeEecC
Confidence 4556777888665 889998 664 46899999999999996
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-34 Score=255.72 Aligned_cols=276 Identities=27% Similarity=0.429 Sum_probs=231.4
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.++.++|+++++++++.||.+++|+.++++.. ..+.+|...+..+.|+|++++|++++.
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELL---------------------RTLKGHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---------------------EEEecCCcceeEEEECCCCCEEEEEcC
Confidence 35678999999999999999999999977644 567889999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
+|.|++||+.+++.+..+ ..|...+.++.|+| +++++++++.+|.+++||+.+.+.... +..|...+.+++|+|+
T Consensus 72 ~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 72 DKTIRLWDLETGECVRTL-TGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNSVAFSPD 146 (289)
T ss_pred CCeEEEEEcCcccceEEE-eccCCcEEEEEEcC--CCCEEEEecCCCeEEEEECCCcEEEEE--eccCCCcEEEEEEcCc
Confidence 999999999988777776 68888999999999 888888888899999999986655543 6678889999999998
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
+ .++++++.|+.+++||+++++....+.. +...+.++.|+|+ +..+++++.++.+++||++..+...
T Consensus 147 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~- 213 (289)
T cd00200 147 G-TFVASSSQDGTIKLWDLRTGKCVATLTG----------HTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLG- 213 (289)
T ss_pred C-CEEEEEcCCCcEEEEEccccccceeEec----------CccccceEEECCC-cCEEEEecCCCcEEEEECCCCceec-
Confidence 7 5777777799999999998877766653 4457899999998 5788888889999999998755321
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCcc
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
....+...+.++.|+|++.++++++ ++.+++|++..+
T Consensus 214 --------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---------------------------- 251 (289)
T cd00200 214 --------------TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---------------------------- 251 (289)
T ss_pred --------------chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc----------------------------
Confidence 2224566899999999999999888 889999998763
Q ss_pred CCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
.....+..|... +.++.| +|++++|++++.||.+++|+
T Consensus 252 ----------~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ----------ECVQTLSGHTNS--VTSLAW-SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----------eeEEEccccCCc--EEEEEE-CCCCCEEEEecCCCeEEecC
Confidence 233444556554 899998 99999999999999999996
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.7e-35 Score=234.83 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=230.2
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+.|+|+|..+|+|+.|..|.+|++. |.+- -...+++|+++|..+.|.+|+..++++|.|.
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~-gdce-------------------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVY-GDCE-------------------NFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecc-cccc-------------------ceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 5689999999999999999999976 3332 1256789999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
+++.||.++|+..+.+ ++|.+.|+.+.-+. .....+.+++.||++++||+++.+.++. ......++++.|..++.
T Consensus 113 ~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t---~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKH-KGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKT---FENKYQLTAVGFKDTSD 187 (338)
T ss_pred eEEEEecccceeeehh-ccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhc---cccceeEEEEEeccccc
Confidence 9999999999998888 89999999988443 1345667889999999999998887764 33457799999998885
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (471)
.+++|+-|+.|++||++.+.....+.. |...|+.+..+|+ +.++.+-+.|.++++||++-....+.
T Consensus 188 -qv~sggIdn~ikvWd~r~~d~~~~lsG----------h~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~~R-- 253 (338)
T KOG0265|consen 188 -QVISGGIDNDIKVWDLRKNDGLYTLSG----------HADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPSQR-- 253 (338)
T ss_pred -ceeeccccCceeeeccccCcceEEeec----------ccCceeeEEeccC-CCccccccccceEEEEEecccCCCCc--
Confidence 579999999999999999988877765 6668999999999 68999999999999999986432111
Q ss_pred CCCCCCcCCCCcccCCC----ccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 244 FGQPADYFCPPNLIGDE----QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
| ..+..++ ......++|+|+++.+.+++ +..+++||...
T Consensus 254 --------~-v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~--------------------------- 297 (338)
T KOG0265|consen 254 --------C-VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS--------------------------- 297 (338)
T ss_pred --------e-EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc---------------------------
Confidence 0 1111111 23356789999999999888 55799999876
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
+..+..+.||... |+++.| +|...+|.+++.|.+|++=+
T Consensus 298 -----------r~~lyklpGh~gs--vn~~~F-hp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 -----------RRILYKLPGHYGS--VNEVDF-HPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred -----------ccEEEEcCCccee--EEEeee-cCCCcEEEEeccCceeEeec
Confidence 4567888999987 999999 99999999999999998643
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-35 Score=245.73 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=228.5
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+.||++|++||+|+.|.+..||++..-. ++++.+++.+|..+|.-+.||||.++|++|+.+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 5699999999999999999999987221 3677899999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec-eeeeEEEEEEccCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQGRAHKLAIEPGS 162 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (471)
.+++||+.+|.....+..+|...+.+++|.| ||..+++|+.|+++..||++...... ..+ ....|.+++..+||
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~---W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGN---WEGVRDPKVHDLAITYDG 366 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhc---ccccccceeEEEEEcCCC
Confidence 9999999999998888777778999999999 99999999999999999997654322 222 23568999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
+ .+++.+.|..|++++.++......+. ...++++++.+.+ ++++++.-.+..+++||++..++...
T Consensus 367 k-~vl~v~~d~~i~l~~~e~~~dr~lis-----------e~~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~lv~k- 432 (519)
T KOG0293|consen 367 K-YVLLVTVDKKIRLYNREARVDRGLIS-----------EEQPITSFSISKD-GKLALVNLQDQEIHLWDLEENKLVRK- 432 (519)
T ss_pred c-EEEEEecccceeeechhhhhhhcccc-----------ccCceeEEEEcCC-CcEEEEEcccCeeEEeecchhhHHHH-
Confidence 5 56777799999999998876665444 3347999999998 68888888999999999997654322
Q ss_pred CCCCCCCcCCCCcccCCC--ccceEEEEEcC-CCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 243 DFGQPADYFCPPNLIGDE--QVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
..+| ...+..-+|-. +..++++|+ |++|+||+..++
T Consensus 433 --------------Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-------------------------- 472 (519)
T KOG0293|consen 433 --------------YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-------------------------- 472 (519)
T ss_pred --------------hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--------------------------
Confidence 1122 22344445544 457999999 558999999874
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC-CCcEEEEeeCCCeEEEEEccC
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~g~~l~~g~~dg~v~iwd~~~ 374 (471)
..+..+.||... |++++| +| +-.++|+|++||+||||-...
T Consensus 473 ------------kll~~LsGHs~~--vNcVsw-NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 473 ------------KLLAVLSGHSKT--VNCVSW-NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ------------ceeEeecCCcce--eeEEec-CCCCHHHhhccCCCCeEEEecCCc
Confidence 567888999976 999999 77 456889999999999998653
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.2e-34 Score=239.69 Aligned_cols=272 Identities=21% Similarity=0.295 Sum_probs=226.2
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC---CCEEEEecCCCeEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---GDILISGSDDRRVI 86 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~---g~~l~s~~~d~~i~ 86 (471)
++.+++|+.||++++|+.. |+.. .++.||.++|.+++|--. ...|++++.|.+++
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~---------------------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSI---------------------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceE---------------------EEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 6889999999999999998 7766 688999999998888432 34699999999999
Q ss_pred EEECCCCceEEEe---ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc-----------------------Cc
Q 012064 87 LWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-----------------------GG 140 (471)
Q Consensus 87 iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------~~ 140 (471)
+|.++.++..... ..||...|.+++..+ ++..+++|+.|.+|++|+.... ..
T Consensus 173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 9999887653322 259999999999999 9999999999999999993211 01
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (471)
.+...+.+|..+|.++.|++.+ .+++++.|.+|+.||++++.....+. ....++++..+|. .++|+
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~-----------~~ksl~~i~~~~~-~~Ll~ 316 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLT-----------TNKSLNCISYSPL-SKLLA 316 (423)
T ss_pred CceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeee-----------cCcceeEeecccc-cceee
Confidence 1224578999999999999844 68999999999999999999888776 4447899999998 78999
Q ss_pred EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe-EEEee-CCcEEEEecCCCCCCCCC
Q 012064 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYN-DEFIYLFTQDMGLGPNPP 298 (471)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~~~i~i~d~~~~~~~~~~ 298 (471)
+|+.|..+++||.+++.-. .+...+.+|.+.|.++.|+|...+ |++++ |+++++||+++.
T Consensus 317 ~gssdr~irl~DPR~~~gs------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~------ 378 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGS------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST------ 378 (423)
T ss_pred ecCCCCceeecCCCCCCCc------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC------
Confidence 9999999999999987421 234456778999999999997754 67777 889999999874
Q ss_pred CCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
..++..+.+|... |.++.| .++.++++|+.|.+|+|+..
T Consensus 379 -------------------------------k~plydI~~h~DK--vl~vdW--~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 -------------------------------KAPLYDIAGHNDK--VLSVDW--NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred -------------------------------CCcceeeccCCce--EEEEec--cCCceEEeccCcceEEEecc
Confidence 3367778888776 999999 46779999999999999864
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-34 Score=224.75 Aligned_cols=287 Identities=19% Similarity=0.217 Sum_probs=237.4
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
+.+++|...|.+++|+-+|..|++|+.|+++++|+++..+..... ..+|.+.|-.++|.|. ....+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEE
Confidence 567899999999999999999999999999999999877543332 3689999999999984 67889999999999999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
|++.+++....... .+ =.-+.|+|+|. .+++++.|..|...|.++.+.....+ ....++-++|+-
T Consensus 93 d~r~~k~~~~i~~~--~e-ni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~-----------~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 93 DIRSGKCTARIETK--GE-NINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQ-----------FKFEVNEISWNN 157 (313)
T ss_pred EeccCcEEEEeecc--Cc-ceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhc-----------ccceeeeeeecC
Confidence 99999987763322 22 34478999995 67999999999999999988776655 334678899997
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCC
Q 012064 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMG 292 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~ 292 (471)
+ +.+++.....|.|.|......+ |...+..|.....++.|+|+|+++|+|+.+ .+.+||++.
T Consensus 158 ~-nd~Fflt~GlG~v~ILsypsLk---------------pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E- 220 (313)
T KOG1407|consen 158 S-NDLFFLTNGLGCVEILSYPSLK---------------PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE- 220 (313)
T ss_pred C-CCEEEEecCCceEEEEeccccc---------------cccccccCCcceEEEEECCCCceEeeccccceeeccChhH-
Confidence 6 5666666777999999887654 345566788889999999999999999965 799999976
Q ss_pred CCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
..+.+.+..+.-+ |+.+.| +.||++||+|++|..|-|=++
T Consensus 221 -------------------------------------LiC~R~isRldwp--VRTlSF-S~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 221 -------------------------------------LICERCISRLDWP--VRTLSF-SHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred -------------------------------------hhhheeeccccCc--eEEEEe-ccCcceeeccCccceEEeEec
Confidence 4556667666665 999999 999999999999999999999
Q ss_pred cCCeeeEEecCCCcceEEEEEcCCCCEEEEeecC---------CcEEEecCC
Q 012064 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---------SDIKILTPN 415 (471)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i~iw~~~ 415 (471)
++|..+.+++ +.++-..++|+|...+||-++.| |.++++-+.
T Consensus 261 etGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 261 ETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999998886 67899999999999999988765 456666543
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-34 Score=254.58 Aligned_cols=319 Identities=19% Similarity=0.334 Sum_probs=262.6
Q ss_pred cCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceE
Q 012064 17 VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96 (471)
Q Consensus 17 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~ 96 (471)
-.+.++..+.++...... ... .....-.+.||...|.++++|.+...+++|+. +.+++|+..+.+++
T Consensus 341 l~nNtv~~ysl~~s~~~~--------p~~----~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kci 407 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTS--------PEA----DRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCI 407 (888)
T ss_pred eecCceEEEEeccCCCCC--------ccc----cccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCccee
Confidence 678888888887411110 000 00111356799999999999999988888765 57999999999999
Q ss_pred EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEE
Q 012064 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176 (471)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 176 (471)
+++.. +.+.+..|.| .++++++|...|.+.++|+.+...+.. ...|.+.|++++.+||+. -+++|+.|.+|+
T Consensus 408 RTi~~---~y~l~~~Fvp--gd~~Iv~G~k~Gel~vfdlaS~~l~Et--i~AHdgaIWsi~~~pD~~-g~vT~saDktVk 479 (888)
T KOG0306|consen 408 RTITC---GYILASKFVP--GDRYIVLGTKNGELQVFDLASASLVET--IRAHDGAIWSISLSPDNK-GFVTGSADKTVK 479 (888)
T ss_pred EEecc---ccEEEEEecC--CCceEEEeccCCceEEEEeehhhhhhh--hhccccceeeeeecCCCC-ceEEecCCcEEE
Confidence 99843 3788999999 999999999999999999998888776 678999999999999995 689999999999
Q ss_pred EEeccCC-----ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcC
Q 012064 177 HFDLRTG-----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 177 iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (471)
+||..-- ...+.+...+. +...-...|.|+.++|| +.+|+++--|.++++|-+.+.+.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~---rtLel~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtlKF------------- 542 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHT---RTLELEDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTLKF------------- 542 (888)
T ss_pred EEeEEEEeccCcccceeeeeccc---eEEeccccEEEEEEcCC-CcEEEEEeccCeEEEEEecceee-------------
Confidence 9997522 11121222111 11113457999999999 79999999999999999988763
Q ss_pred CCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccc
Q 012064 252 CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (471)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (471)
.-..-+|.-+|.++..+||++++++|+ |.+|++|-++-|
T Consensus 543 --flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-------------------------------------- 582 (888)
T KOG0306|consen 543 --FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-------------------------------------- 582 (888)
T ss_pred --eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc--------------------------------------
Confidence 233567899999999999999999999 558999998774
Q ss_pred cCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEE
Q 012064 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (471)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 410 (471)
.+-+.+.+|.+. |.++.| -|....+++++.|+.|+-||-..-+.++.+.+|...|++++.+|+|.+++|+|.|.+|+
T Consensus 583 DCHKS~fAHdDS--vm~V~F-~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 583 DCHKSFFAHDDS--VMSVQF-LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred hhhhhhhcccCc--eeEEEE-cccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence 455677788887 999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC
Q 012064 411 ILTPNA 416 (471)
Q Consensus 411 iw~~~~ 416 (471)
+|.-..
T Consensus 660 lwE~td 665 (888)
T KOG0306|consen 660 LWERTD 665 (888)
T ss_pred eeeccC
Confidence 999765
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=222.30 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=205.1
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.+-|+-+|++.++++.|++||+||+..|.++ +++.+|..+|..++.+.|...|++|+.|
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~li---------------------ktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALI---------------------KTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeeccccccee---------------------eeecCCCceeeeccccccccccccCCCC
Confidence 3568999999999999999999999988877 7999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
..+.+||+++|+.++++ .+|.+.|+.++|+. +...+++|+.|.++++||-++....+.+.+....+.|.++....
T Consensus 81 k~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-- 155 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-- 155 (307)
T ss_pred ceEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--
Confidence 99999999999999998 89999999999998 99999999999999999999887766666888889999999875
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
+.+++|+.||+++.||++.++...-+. ..+|++++|+++ ++..+.++.|+++++.|-.++++.+.+
T Consensus 156 -heIvaGS~DGtvRtydiR~G~l~sDy~------------g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 156 -HEIVAGSVDGTVRTYDIRKGTLSSDYF------------GHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred -cEEEeeccCCcEEEEEeecceeehhhc------------CCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh
Confidence 468999999999999999998765543 347999999999 789999999999999999999876442
Q ss_pred CCCCCCCcCCCCcccCCCc--cceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 243 DFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
+ +|. ..-...+++.....+++++ ||.+++||+...
T Consensus 222 k---------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 222 K---------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred c---------------ccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 2 222 2234566777777899998 668999999764
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=6.3e-34 Score=244.42 Aligned_cols=306 Identities=16% Similarity=0.209 Sum_probs=237.3
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eEEEeecCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
....++++|+..|.++++.|.|-.|++|+.|.+|++||+..-. ..+.+.......|.+++|++ .+..|++.+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--TGDQILVVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC--CCCeEEEEecC
Confidence 4556788999999999999999999999999999999986432 22233334455899999999 89888888888
Q ss_pred CeEEEEeccccCccee----------eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCC
Q 012064 128 GQVRHAQILERGGVET----------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDD 196 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 196 (471)
...+++|-...+.... ...++|...+++.+|+|..+..|++++.||++++||+...+. .+.++.....
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~- 314 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG- 314 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC-
Confidence 8999999654433221 124579999999999999989999999999999999987653 2333322111
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc--ceEEEEEcCCCC
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV--GITGLAFSDQSE 274 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 274 (471)
+ ...+++..+|+|+ +.+||+|+.||.|.+|+.+...... ...+...|.. .|+++.|+++|+
T Consensus 315 --g--~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p------------~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 315 --G--KRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRP------------VMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred --C--cccCceeeecCCC-cchhhhcccCCceeeeecCCccccc------------ceEeeeccCCCCceeEEEeccccc
Confidence 1 3457889999999 6889999999999999986543211 1223344554 899999999999
Q ss_pred eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC
Q 012064 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (471)
Q Consensus 275 ~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (471)
+|++-+ |+++++||++..+ +++....+-.....-+.++| ||
T Consensus 378 ~LlSRg~D~tLKvWDLrq~k-------------------------------------kpL~~~tgL~t~~~~tdc~F-SP 419 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFK-------------------------------------KPLNVRTGLPTPFPGTDCCF-SP 419 (641)
T ss_pred hhhhccCCCceeeeeccccc-------------------------------------cchhhhcCCCccCCCCcccc-CC
Confidence 999987 7799999998753 33333344333333567777 99
Q ss_pred CCcEEEEeeC------CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEe-cCC
Q 012064 354 KCEYVVSGSD------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL-TPN 415 (471)
Q Consensus 354 ~g~~l~~g~~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw-~~~ 415 (471)
+.++|++|.. .|.+.+||..+.+.+..+.-....|..+.|+|.-+.+..++.||+++|| |..
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 9999999853 4789999999999998888778899999999999989889999999985 544
No 57
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=252.44 Aligned_cols=363 Identities=58% Similarity=0.969 Sum_probs=302.8
Q ss_pred cccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecC
Q 012064 36 NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115 (471)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 115 (471)
.|...+.++...+.++.+...|.+|.+.|..+.|+..|..|++|+.|..|.+||+..+.....+..+|...|....|.|+
T Consensus 117 ~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 117 RFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF 196 (559)
T ss_pred HHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC
Confidence 34456777778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCeEEEEeccccCcce-eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeeccc
Q 012064 116 TDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (471)
Q Consensus 116 ~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (471)
.+...+++++.||.+++=.+...+... .+.+..|.++|..++..|+.++-|++++.|+.+.-+|++++.....+.+...
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 889999999999999998876554443 5668889999999999999999999999999999999999988777765443
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC-C
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S 273 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 273 (471)
... .....++++.+|.+.+.+++++.|-.+++||.+.-..... ..+...+||.++.......|++++|+.+ +
T Consensus 277 ~~~----~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~---n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 277 DEK----ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN---NGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred CCc----cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc---cchhhhcCCccccccCcccceeEEecCCcc
Confidence 221 1246789999999888999999999999999987653322 2356788999988888889999999955 5
Q ss_pred CeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC
Q 012064 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (471)
Q Consensus 274 ~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (471)
.+|++.++..|++|....+.-..+.+..+. .....+.++||.+..+|..+.||.|
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~-------------------------~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPR-------------------------EQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcch-------------------------hhccchhhcccccccccceeeeccC
Confidence 678888899999996554433222221110 0223345999999999999999999
Q ss_pred CCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccCcchheee
Q 012064 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQAM 430 (471)
Q Consensus 354 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 430 (471)
...|+++|++-|.|.||+-++++.+..+.+....|+|+.-+|.-..||+++-|..|+||...+.+....+...++++
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi 481 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVI 481 (559)
T ss_pred ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHH
Confidence 99999999999999999999999999999877799999999999999999999999999997766655555444433
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=229.51 Aligned_cols=275 Identities=18% Similarity=0.261 Sum_probs=236.4
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEE
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~ 86 (471)
.|+|-+|++++.||.=.+-+-+||..+ -++.||.+.|+...++.+...-|+++.|-+-+
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwi---------------------gtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWI---------------------GTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcE---------------------EeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 358899999999999999999999988 68999999999999999999999999999999
Q ss_pred EEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEE
Q 012064 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (471)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (471)
+||.-+|..+..+ .|+..|..++|+. |.++|++|+.+..+|++|++..+... ..+.+|.+.|..+.|...+ +.+
T Consensus 85 vw~a~tgdelhsf--~hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD-~~i 158 (334)
T KOG0278|consen 85 VWDAVTGDELHSF--EHKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHED-KCI 158 (334)
T ss_pred hhhhhhhhhhhhh--hhhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccC-ceE
Confidence 9999999999888 6888999999999 99999999999999999998776654 3478999999999999877 578
Q ss_pred EEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCC
Q 012064 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (471)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (471)
++++.|++||+||.+++..++.+. ...+|+++.++++ +.++ +-...+.|.+||..+..++..+++
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~-----------~~s~VtSlEvs~d-G~il-Tia~gssV~Fwdaksf~~lKs~k~-- 223 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLE-----------FNSPVTSLEVSQD-GRIL-TIAYGSSVKFWDAKSFGLLKSYKM-- 223 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEe-----------cCCCCcceeeccC-CCEE-EEecCceeEEeccccccceeeccC--
Confidence 888999999999999999999887 4457999999998 5555 455677899999998876554333
Q ss_pred CCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCC
Q 012064 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
...|.+..++|+...+++|+ +..++.||..++..
T Consensus 224 --------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE------------------------------- 258 (334)
T KOG0278|consen 224 --------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE------------------------------- 258 (334)
T ss_pred --------------ccccccccccCCCceEEecCcceEEEEEeccCCce-------------------------------
Confidence 34588889999988888887 45899999998633
Q ss_pred CcccccCCee-eecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee
Q 012064 326 NTDVRIAPQV-YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (471)
Q Consensus 326 ~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~ 378 (471)
+.. .++|.++ |.|+.| +|||...++|++||+|++|....++..
T Consensus 259 -------i~~~nkgh~gp--VhcVrF-SPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 259 -------IGSYNKGHFGP--VHCVRF-SPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred -------eeecccCCCCc--eEEEEE-CCCCceeeccCCCceEEEEEecCCCch
Confidence 233 3678776 999999 999999999999999999998766543
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=245.88 Aligned_cols=289 Identities=20% Similarity=0.274 Sum_probs=236.5
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
.....+..|.+.+..+.|-++...|++|+.|..|++|+...++ .+.+ +.+..++|+.+.|.+ +++++++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t-LaGs~g~it~~d~d~--~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST-LAGSLGNITSIDFDS--DNKHVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh-hhccCCCcceeeecC--CCceEEeecCCCc
Confidence 3446788999999999999998999999999999999987655 3333 367788899999999 9999999999999
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
+++|++.+.....+ +.+|.+.|+++.|..... .+++|+.|.+|++||+....+.+.+. ....+..+
T Consensus 243 ~r~Wnvd~~r~~~T--LsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l-----------~~S~cnDI 308 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHT--LSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVL-----------PGSQCNDI 308 (459)
T ss_pred eeeeeccchhhhhh--hcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccc-----------ccccccce
Confidence 99999988877766 899999999999998773 48999999999999999987776654 33456777
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEe
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d 288 (471)
+.++ ..+++|..|++|++||.+....... .. -.+.|+++..++++..|.+++ |+++.+.|
T Consensus 309 ~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~s---------------v~-~gg~vtSl~ls~~g~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 309 VCSI---SDVISGHFDKKVRFWDIRSADKTRS---------------VP-LGGRVTSLDLSMDGLELLSSSRDDTLKVID 369 (459)
T ss_pred Eecc---eeeeecccccceEEEeccCCceeeE---------------ee-cCcceeeEeeccCCeEEeeecCCCceeeee
Confidence 7764 4789999999999999998764322 11 135899999999998877777 78999999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
+++.....++. -.+.......+.+.| ||++.|+++|+.||.|+
T Consensus 370 lRt~eI~~~~s------------------------------------A~g~k~asDwtrvvf-Spd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 370 LRTKEIRQTFS------------------------------------AEGFKCASDWTRVVF-SPDGSYVAAGSADGSVY 412 (459)
T ss_pred cccccEEEEee------------------------------------ccccccccccceeEE-CCCCceeeeccCCCcEE
Confidence 98753322211 111111112677888 99999999999999999
Q ss_pred EEEccCCeeeEEecCCCc--ceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 369 IWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999998876554 599999999999999999999999994
No 60
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.5e-35 Score=240.26 Aligned_cols=294 Identities=19% Similarity=0.267 Sum_probs=239.0
Q ss_pred eeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
+.+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++...+ ..|.+.|..+++. ...+++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~----~~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVT----QTSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEec----ccceEEecCCcce
Confidence 5567889999999999999987 78999999999999999998888888 8999999999995 3789999999999
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
+.|.+... ... .......+..+.-+..+ ..++++|.+ |.|||.+-..+++.+.. ....+.++.
T Consensus 132 K~wk~~~~-p~~---tilg~s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~Pv~smsw----------G~Dti~svk 194 (433)
T KOG0268|consen 132 KQWKIDGP-PLH---TILGKSVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDNPVSSMSW----------GADSISSVK 194 (433)
T ss_pred eeeeccCC-cce---eeecccccccccccccc-ccccccCce--eeecccccCCccceeec----------CCCceeEEe
Confidence 99998663 221 22244567777777766 578888875 99999998888888775 334689999
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEec
Q 012064 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQ 289 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~ 289 (471)
|+|-...+|+++.+|+.|.+||++..+......+ ...-+.++|+|++-.+++++++ .++.||+
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~----------------~mRTN~IswnPeafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL----------------TMRTNTICWNPEAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeee----------------eccccceecCccccceeeccccccceehhh
Confidence 9999788899999999999999999874433211 2234679999977777777766 7999999
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
+.- ..++..+.+|.+. +.++.| +|-|+-+++|+.|.+|+|
T Consensus 259 R~l-------------------------------------~~p~~v~~dhvsA--V~dVdf-sptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 259 RNL-------------------------------------SRPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred hhh-------------------------------------cccchhhccccee--EEEecc-CCCcchhccccccceEEE
Confidence 864 3456778888887 999999 999999999999999999
Q ss_pred EEccCCeeeEEecC-CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccC
Q 012064 370 WKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP 423 (471)
Q Consensus 370 wd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 423 (471)
|....+.....+.. ....|.++.||.|.+++++||+|+.|++|.....+.....
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 99987755443321 2357999999999999999999999999999876654333
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-34 Score=260.42 Aligned_cols=259 Identities=20% Similarity=0.323 Sum_probs=208.5
Q ss_pred eeeeeEEec-cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCC-----------------------------------
Q 012064 50 RLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE----------------------------------- 93 (471)
Q Consensus 50 ~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~----------------------------------- 93 (471)
.+...+.++ .|.+.|+++.||+||+|||+||.|+.|+||.+...
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 335567777 89999999999999999999999999999987650
Q ss_pred -------------------------ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec
Q 012064 94 -------------------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (471)
Q Consensus 94 -------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 148 (471)
++++. +.+|.+.|.++.|+ ..++|++++.|.++|+|++...+++. ...
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~---~F~ 407 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLK---VFS 407 (712)
T ss_pred cccccccccCCccccCCCccccccccchhh-hhccchhheecccc---cCCeeEeccccccEEeecCCCcceee---EEe
Confidence 00111 26899999999999 57899999999999999998888766 456
Q ss_pred eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeE
Q 012064 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (471)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (471)
|.+-|+|++|+|-++++|++|+-|+.++||++...+.+.-..+. .-|++++|.|+ |+..++|+.+|.+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------~lITAvcy~Pd-Gk~avIGt~~G~C 475 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-----------DLITAVCYSPD-GKGAVIGTFNGYC 475 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-----------hhheeEEeccC-CceEEEEEeccEE
Confidence 99999999999988899999999999999999988766554432 35899999999 7899999999999
Q ss_pred EEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC--CeEEEeeCCcEEEEecCCCCCCCCCCCCCcccc
Q 012064 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTR 306 (471)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 306 (471)
++|+.+..++......... ......+. .|+++.|.|.. +.|++..|..|+|||.+.
T Consensus 476 ~fY~t~~lk~~~~~~I~~~------~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--------------- 533 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHIRLH------NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--------------- 533 (712)
T ss_pred EEEEccCCeEEEeeeEeec------cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc---------------
Confidence 9999998876544322110 00111223 79999999854 378888888999999966
Q ss_pred ccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
...+.+|+|..+...-....| +.||++|+++++|..|++|+..
T Consensus 534 -----------------------~~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 534 -----------------------KDLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred -----------------------hhhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEEEeCC
Confidence 355677777665544556677 8899999999999999999974
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-32 Score=275.14 Aligned_cols=303 Identities=11% Similarity=0.095 Sum_probs=221.2
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEec
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS 80 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~ 80 (471)
.+++|+|+++++|+|+.|++|+||+.++..... .+ .. .....+. +...|.+++|+| ++.+||+++
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----------~~--~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG----------RD--IH-YPVVELA-SRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccc----------cc--cc-cceEEec-ccCceeeEEeccCCCCEEEEEe
Confidence 357799999999999999999999986321100 00 00 0112233 346799999987 478999999
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.||+|++||+.+++.+..+ .+|.+.|++++|+|. ++.+|++|+.||.|++||+.++..... +. +...+.++.|++
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~-~~~~v~~v~~~~ 627 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQGVSIGT--IK-TKANICCVQFPS 627 (793)
T ss_pred CCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCCCcEEEE--Ee-cCCCeEEEEEeC
Confidence 9999999999998887777 789999999999962 678999999999999999987766543 44 336789999965
Q ss_pred CCCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
.....+++|+.||.|++||+++... ...+.. |...|.++.|.+ +.++++++.|+.|++||++.....
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----------h~~~V~~v~f~~--~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----------HSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceEecC----------CCCCEEEEEEeC--CCEEEEEECCCEEEEEeCCCCccc
Confidence 4447899999999999999987652 333321 556789999973 578999999999999999754210
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
. ...+.....+|...+..++|+|++.+|++++ ++.+++|+.........+....
T Consensus 696 ~---------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~---------------- 750 (793)
T PLN00181 696 I---------NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT---------------- 750 (793)
T ss_pred c---------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc----------------
Confidence 0 0112334556788899999999999999998 6689999976542211100000
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
.+ .........+.. .|.+++| +|++..|++|+.||.|+||++
T Consensus 751 ------~~---~~~~~~~~~~~~--~V~~v~w-s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 751 ------ID---PVSGLEVDDASQ--FISSVCW-RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ------CC---cccccccCCCCc--EEEEEEE-cCCCCeEEEecCCCcEEEEec
Confidence 00 000011122333 4899999 999999999999999999996
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.4e-35 Score=240.27 Aligned_cols=237 Identities=19% Similarity=0.302 Sum_probs=206.1
Q ss_pred CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 103 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
....|+|+.+ |+..+++|..|.+|++||..+..+... +.+|++.|.|+.|.. +++++|+.|.+|++||.++
T Consensus 196 ~skgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe----cchhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC
Confidence 4568999999 778999999999999999988777765 899999999999965 5899999999999999999
Q ss_pred CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc
Q 012064 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (471)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (471)
++++..+.. |...|..+.|+. .++++++.|.++.+||+..... ........+|..
T Consensus 267 ge~l~tlih----------HceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~------------it~rrVLvGHrA 321 (499)
T KOG0281|consen 267 GEPLNTLIH----------HCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD------------ITLRRVLVGHRA 321 (499)
T ss_pred CchhhHHhh----------hcceeEEEEEeC---CEEEEecCCceeEEEeccCchH------------HHHHHHHhhhhh
Confidence 999887754 566789999984 4899999999999999987541 123456778899
Q ss_pred ceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc
Q 012064 263 GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (471)
Q Consensus 263 ~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (471)
.|+.+.|+. +++++++ |.+|++|++.+ ...++++.+|..
T Consensus 322 aVNvVdfd~--kyIVsASgDRTikvW~~st--------------------------------------~efvRtl~gHkR 361 (499)
T KOG0281|consen 322 AVNVVDFDD--KYIVSASGDRTIKVWSTST--------------------------------------CEFVRTLNGHKR 361 (499)
T ss_pred heeeecccc--ceEEEecCCceEEEEeccc--------------------------------------eeeehhhhcccc
Confidence 999999965 5999988 45899999988 467788899988
Q ss_pred eeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 342 ~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
. |.|+.+ .|+++++|+.|.+|++||++.|.+++.++||..-|.++.| |.+.+++|+.||+|+|||+..+..+
T Consensus 362 G--IAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 362 G--IACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred c--ceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCC
Confidence 7 777776 7899999999999999999999999999999999999999 5679999999999999999987654
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-33 Score=218.37 Aligned_cols=292 Identities=17% Similarity=0.177 Sum_probs=229.3
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
|+.+.|+.+|.+|.+++.|.+..+|-..+|+.+ -++.||++.|+|++.+.+.++|+||+
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------Gty~GHtGavW~~Did~~s~~liTGS 71 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------GTYDGHTGAVWCCDIDWDSKHLITGS 71 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCcee---------------------eeecCCCceEEEEEecCCcceeeecc
Confidence 456789999999999999999999999889988 68999999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-----CeEEEEeccccC-----cceeeEeecee
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERG-----GVETKLLGKHQ 150 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~-----~~~~~~~~~~~ 150 (471)
.|.++++||+++|+++..+ ....+|..+.|++ +|++++.+.++ +.|.++|++... ..+...+..+.
T Consensus 72 AD~t~kLWDv~tGk~la~~--k~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATW--KTNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ccceeEEEEcCCCcEEEEe--ecCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 9999999999999998887 4567899999999 99888877643 689999997332 11123366788
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcccee-eeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (471)
+.++..-|.|-+ ..+++|.+||.|..||+++++.... .+. |...|+.+.++|+ ..++++++.|.+-+
T Consensus 148 skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~----------h~~~Ind~q~s~d-~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 148 SKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEE----------HSSKINDLQFSRD-RTYFITGSKDTTAK 215 (327)
T ss_pred cceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhh----------hccccccccccCC-cceEEecccCccce
Confidence 999999999999 5789999999999999999854332 221 5668999999999 78999999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCc--EEEEecCCCCCCCCCCCCCcccc
Q 012064 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF--IYLFTQDMGLGPNPPPSSPVSTR 306 (471)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~--i~i~d~~~~~~~~~~~~~~~~~~ 306 (471)
+||.++.+.+..+. ...++++.+++|-...++.++ .+. |.-=+.+.++-...
T Consensus 216 l~D~~tl~v~Kty~----------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEAr--------- 270 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYT----------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEAR--------- 270 (327)
T ss_pred eeeccceeeEEEee----------------ecccccceecccccceEEecCCceeeeeeeecccccchhhh---------
Confidence 99999887543322 256789999999877766655 332 22111111110000
Q ss_pred ccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
.....-.+.+..+++|-++ |++++| +|+|+..++|++||.||+.....
T Consensus 271 -----------------Fyh~i~eEEigrvkGHFGP--INsvAf-hPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 271 -----------------FYHLIFEEEIGRVKGHFGP--INSVAF-HPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred -----------------HHHHHHHHHhccccccccC--cceeEE-CCCCcccccCCCCceEEEEEecc
Confidence 0000113456778899987 999999 99999999999999999986543
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-32 Score=228.06 Aligned_cols=293 Identities=17% Similarity=0.261 Sum_probs=231.4
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecC-CCCeEEEEEeCCCeEEEEeccc
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTCAADGQVRHAQILE 137 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~ 137 (471)
-|.+.|.++... ++++++|++||.+++||.. |+....+ .+|.++|.+++|.-. .....|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 378888888877 7899999999999999965 7777777 799999998888651 1223599999999999999887
Q ss_pred cCccee--eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc--ceeee---------------ecccCCcC
Q 012064 138 RGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFT---------------CRPIDDRR 198 (471)
Q Consensus 138 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---------------~~~~~~~~ 198 (471)
++.... +...+|...|.+++..+++ ..+++|+.|..|.+|+.++... ..... ..+.....
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 765432 2345999999999999999 5799999999999999332111 00000 00011112
Q ss_pred cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE
Q 012064 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (471)
+ |..+|.++.|++. ..+++++.|.+|+.||+.+++..... .....+.++.++|..++|++
T Consensus 258 G--Ht~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~----------------~~~ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 258 G--HTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTL----------------TTNKSLNCISYSPLSKLLAS 317 (423)
T ss_pred c--cccceeeEEEcCC--CceEeecccceEEEEEeecccceeee----------------ecCcceeEeecccccceeee
Confidence 3 6678999999984 58899999999999999988743221 12456899999999999999
Q ss_pred eeC-CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-c
Q 012064 279 YND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-E 356 (471)
Q Consensus 279 ~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~ 356 (471)
++. ..+++||.+++.- ....+.+.+|.+. |.++.| +|.. .
T Consensus 318 gssdr~irl~DPR~~~g-----------------------------------s~v~~s~~gH~nw--Vssvkw-sp~~~~ 359 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDG-----------------------------------SVVSQSLIGHKNW--VSSVKW-SPTNEF 359 (423)
T ss_pred cCCCCceeecCCCCCCC-----------------------------------ceeEEeeecchhh--hhheec-CCCCce
Confidence 984 4799999987521 2345788999997 999999 7755 4
Q ss_pred EEEEeeCCCeEEEEEccCCe-eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 357 YVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 357 ~l~~g~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
.|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++.++++|+.|++|+|+.-.
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 67789999999999999887 889999999999999996 56799999999999998754
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-33 Score=235.76 Aligned_cols=285 Identities=16% Similarity=0.203 Sum_probs=236.8
Q ss_pred ccccEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc
Q 012064 60 HRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (471)
Q Consensus 60 h~~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 138 (471)
..+.|.+++|||... -+|+.+. -.+.||+..+......+ ...+..++++.|.. ||+++++|+..|.|+++|+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeec--CCeEEEccCCcCcEEEeccccH
Confidence 347899999999653 3444443 36999998887776666 56788999999999 9999999999999999996553
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
..+. .+.+|+.++..+.|+|.+...+++|+.|+.+++||+.+......+.. |...|.|.+|+|.++++
T Consensus 101 ~iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~----------htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 101 VILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG----------HTDYVRCGDISPANDHI 168 (487)
T ss_pred HHHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC----------CcceeEeeccccCCCeE
Confidence 3333 38899999999999999989999999999999999999874223332 66789999999998899
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~ 298 (471)
+++|+.||.|++||.+... .....-.|..+|..+.+-|.|..+++++.+.+++||+.++
T Consensus 169 vvtGsYDg~vrl~DtR~~~---------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G------ 227 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLT---------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG------ 227 (487)
T ss_pred EEecCCCceEEEEEeccCC---------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC------
Confidence 9999999999999999763 1223345678899999999999999999999999999866
Q ss_pred CCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee
Q 012064 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (471)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~ 378 (471)
.+.+..+..|... |+|+++ ..++..|++|+-|+.|++||+.+.+.+
T Consensus 228 -------------------------------~qll~~~~~H~Kt--VTcL~l-~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 228 -------------------------------GQLLTSMFNHNKT--VTCLRL-ASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred -------------------------------ceehhhhhcccce--EEEEEe-ecCCceEeecccccceEEEEccceEEE
Confidence 3334444446654 999999 789999999999999999999899999
Q ss_pred EEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 379 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
..+. -.++|.+++.+|+++.++.|..||.+.+=+...
T Consensus 274 ~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 274 HSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred Eeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 8886 467999999999999999999999988875443
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-33 Score=217.21 Aligned_cols=283 Identities=18% Similarity=0.238 Sum_probs=225.8
Q ss_pred EEEEEcCC-CCEEEEec-------CCCeEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEec
Q 012064 65 NTVSFNTD-GDILISGS-------DDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (471)
Q Consensus 65 ~~~~~s~~-g~~l~s~~-------~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 135 (471)
.++.|||- .++||.+. ..|++.|-++..++.+..+. -.-...+..++|++. ..+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence 47889993 23343321 35889999986554444332 235678999999994 5678889999999999996
Q ss_pred cccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC
Q 012064 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (471)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (471)
..... +...++.|...|.++.|++...+.+++++.|++|++|+...++.+.++.. +...|...+|+|..
T Consensus 91 ~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g----------h~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 91 TMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG----------HNSCIYQAAFSPHI 159 (311)
T ss_pred CCCCc-chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC----------CccEEEEEecCCCC
Confidence 54433 33448899999999999998878899999999999999999888888764 66689999999998
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEee-CCcEEEEecCCCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~d~~~~~ 293 (471)
++++++++.|+.+++||++.... ...+..|...|.++.|+.-. ..|++++ |+.|+.||+++-
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk---------------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~- 223 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGK---------------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL- 223 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCc---------------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-
Confidence 99999999999999999986531 12355677899999999744 5677777 668999999875
Q ss_pred CCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-cEEEEeeCCCeEEEEEc
Q 012064 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~~dg~v~iwd~ 372 (471)
+.++..+.+|.-. |+.+.| ||.. ..||+++.|-++||||.
T Consensus 224 ------------------------------------r~pl~eL~gh~~A--VRkvk~-Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 224 ------------------------------------RTPLFELNGHGLA--VRKVKF-SPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred ------------------------------------cccceeecCCceE--EEEEec-CcchhhHhhhccccceEEeccc
Confidence 3456777888876 999999 8865 58899999999999998
Q ss_pred cCC-eeeEEecCCCcceEEEEEcCC-CCEEEEeecCCcEEEecC
Q 012064 373 KGG-ELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKILTP 414 (471)
Q Consensus 373 ~~~-~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~ 414 (471)
..+ ..+.+...|+.-+..+.||+- ..++|+++.|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 754 455667789999999999975 559999999999999985
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=214.74 Aligned_cols=269 Identities=17% Similarity=0.240 Sum_probs=215.7
Q ss_pred CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceE
Q 012064 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVK 96 (471)
Q Consensus 18 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~ 96 (471)
..|.+.|-++..++-+ ...+.+. -.+.+..++|++.. ..+++++.||+++|||+......
T Consensus 36 G~G~L~ile~~~~~gi------------------~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P 96 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGI------------------QECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP 96 (311)
T ss_pred cCceEEEEecCCCCCe------------------EEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcc
Confidence 5788888888744433 2233333 35789999999965 67889999999999997544433
Q ss_pred EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEE
Q 012064 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176 (471)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 176 (471)
....+.|..+|.++.|++. ++..+++++-|++|++|+...++.+.+ +.+|...|....|+|..++++++++.|++++
T Consensus 97 i~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~T--f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 97 IHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQT--FNGHNSCIYQAAFSPHIPNLFASASGDGTLR 173 (311)
T ss_pred hhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEe--ecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence 3334899999999999994 667788889999999999988777766 8999999999999999999999999999999
Q ss_pred EEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc
Q 012064 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (471)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (471)
+||++.......+.. |...+.++.|+.-+.+.+++|+.|+.|+.||+++.+ .|...
T Consensus 174 lwdvr~~gk~~~i~a----------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------------~pl~e 229 (311)
T KOG0277|consen 174 LWDVRSPGKFMSIEA----------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------------TPLFE 229 (311)
T ss_pred EEEecCCCceeEEEe----------ccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------------cccee
Confidence 999987654444543 556899999999888999999999999999999876 34556
Q ss_pred cCCCccceEEEEEcCCC-CeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCe
Q 012064 257 IGDEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (471)
Q Consensus 257 ~~~~~~~i~~~~~~~~~-~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (471)
+.+|.-.|+.+.|+|.. .+|++++.+ ++++||...+ ...+.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-------------------------------------ds~~e 272 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-------------------------------------DSAIE 272 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccc-------------------------------------hhhhh
Confidence 68889999999999975 578888855 8999998754 23344
Q ss_pred eeecCCceeEeeeeeeeCC-CCcEEEEeeCCCeEEEEEc
Q 012064 335 VYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 335 ~~~~~~~~~~i~~~~~~s~-~g~~l~~g~~dg~v~iwd~ 372 (471)
++.-|..- +..+.| ++ ++.++|+.+.|+.++||+-
T Consensus 273 ~~~~HtEF--v~g~Dw-s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEF--VCGLDW-SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceE--Eecccc-ccccCceeeecccccceeeecc
Confidence 44555543 778888 54 6779999999999999983
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=231.20 Aligned_cols=278 Identities=19% Similarity=0.296 Sum_probs=226.3
Q ss_pred CCCCCCC-cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 4 ASNNNNN-KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 4 ~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
++-+|+. ..+++|+.||.|+|||+...++. .+++.|.+.|..+++.. ..++++|.|
T Consensus 72 lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~---------------------~~f~AH~G~V~Gi~v~~--~~~~tvgdD 128 (433)
T KOG0268|consen 72 LAKHPNKLSTVASGSCDGEVKIWNLSQRECI---------------------RTFKAHEGLVRGICVTQ--TSFFTVGDD 128 (433)
T ss_pred hhcCcchhhhhhccccCceEEEEehhhhhhh---------------------heeecccCceeeEEecc--cceEEecCC
Confidence 3445554 77999999999999999976666 78999999999999986 678899999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
.+|+.|.++- .++.+++ -...+..+.-+. .+..+++|+.+ |.|||.....++.. +.-..+.|.++.|+|..
T Consensus 129 KtvK~wk~~~-~p~~til--g~s~~~gIdh~~--~~~~FaTcGe~--i~IWD~~R~~Pv~s--mswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 129 KTVKQWKIDG-PPLHTIL--GKSVYLGIDHHR--KNSVFATCGEQ--IDIWDEQRDNPVSS--MSWGADSISSVKFNPVE 199 (433)
T ss_pred cceeeeeccC-Ccceeee--cccccccccccc--ccccccccCce--eeecccccCCccce--eecCCCceeEEecCCCc
Confidence 9999999764 4666663 345667777666 77889999864 99999987777766 55566789999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
..+|++++.|+.|.+||++++.++.... ....-+.++|+|. ...|++|.+|..++.||++..+
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi-----------~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~----- 262 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVI-----------LTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLS----- 262 (433)
T ss_pred chheeeeccCCceEEEecccCCccceee-----------eeccccceecCcc-ccceeeccccccceehhhhhhc-----
Confidence 8899999999999999999999887765 3345689999994 8889999999999999999865
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
.|.....+|-+.|.++.|+|.|+-+++|+ |.+|+||..+.+.....+.
T Consensus 263 ---------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---------------------- 311 (433)
T KOG0268|consen 263 ---------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---------------------- 311 (433)
T ss_pred ---------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh----------------------
Confidence 45667778899999999999999999999 6689999998764322211
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~ 379 (471)
.. .-..|.++.| |.|.+|+++|++|+.|++|.....+.+.
T Consensus 312 ----------------tk-RMq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 312 ----------------TK-RMQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ----------------Hh-hhheeeEEEE-eccccEEEecCCCcceeeeecchhhhcC
Confidence 00 1113899999 9999999999999999999876554443
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=222.06 Aligned_cols=297 Identities=13% Similarity=0.222 Sum_probs=229.8
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCC-----------------CceEEEeecCCCcceeEEEEecCCC
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-----------------ERVKLSFHSGHNDNVFQAKIMPFTD 117 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~ 117 (471)
..+..|.+++.+.+|||||.++|+|+.|..|+|.|++. +.++.+.+-.|..+|+++.|+| .
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP--r 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP--R 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc--h
Confidence 45678999999999999999999999999999999861 1123333367999999999999 9
Q ss_pred CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc
Q 012064 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (471)
Q Consensus 118 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (471)
...|++++.|++|+++|+................+|.++.|+|.|. ++++|.....+++||+++-++...-.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfvsan------- 255 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSAN------- 255 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecC-------
Confidence 9999999999999999986654433322334567899999999995 78899999999999999887643322
Q ss_pred CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCC-ccceEEEEEcCCCCeE
Q 012064 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELL 276 (471)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l 276 (471)
+...|...|+++.+++. +++.++++.||.|++||--+.+ |...+...| ...|.+..|..+|+|+
T Consensus 256 Pd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r--------------Cv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR--------------CVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred cccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH--------------HHHHHHhhcCCceeeeEEEccCCeEE
Confidence 12227778999999998 7899999999999999977665 333444333 4679999999999999
Q ss_pred EEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCC--cee-EeeeeeeeC
Q 012064 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR--NCV-TVKGVNFFG 352 (471)
Q Consensus 277 ~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~i~~~~~~s 352 (471)
.+.+ |..+++|.+.+++.+.. +.|.. +.. .-+...| .
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~--------------------------------------YtGAg~tgrq~~rtqAvF-N 361 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKE--------------------------------------YTGAGTTGRQKHRTQAVF-N 361 (430)
T ss_pred eecCCcceeeeeeecCCceEEE--------------------------------------EecCCcccchhhhhhhhh-c
Confidence 9888 55899999998754433 22221 000 0112233 5
Q ss_pred CCCcEEEEeeC-CCeEEEEEccCCeeeEEe-cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 353 PKCEYVVSGSD-CGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 353 ~~g~~l~~g~~-dg~v~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
....|++.-.+ .+.+.-||..++..+..+ .+|.+.+..+.-||.+.-+++|+.|.++++|--.
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 55666666544 367899999888766554 4799999999999999999999999999999643
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=243.45 Aligned_cols=310 Identities=18% Similarity=0.239 Sum_probs=244.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..+.|+|++.++++|++|-+|++|+.++.+++ .+|.||-+.|..+.|++.-.+++++|.
T Consensus 55 Rgv~FH~~qplFVSGGDDykIkVWnYk~rrcl---------------------ftL~GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 55 RGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL---------------------FTLLGHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred ceeeecCCCCeEEecCCccEEEEEecccceeh---------------------hhhccccceeEEeeccCCCceEEEccC
Confidence 35789999999999999999999999988887 689999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC----------------------
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG---------------------- 139 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------- 139 (471)
|.+|+||++++++++..+ .||..-|.|..|+| ....++++|-|.+||+||+..-+
T Consensus 114 DQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhp--tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHP--TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred CCeEEEEeccCCceEEEE-ecCceEEEeeccCC--ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 999999999999998877 89999999999999 89999999999999999985211
Q ss_pred -----cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 140 -----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 140 -----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
.+....+.+|...|+-++|+|.-+ ++++|+.|+.|++|.+..-+.-..-.+ ++ |...|.++-|+|.
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtc------rg--H~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTC------RG--HYNNVSSVLFHPH 261 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhh------hc--ccCCcceEEecCc
Confidence 123345778999999999999995 899999999999999876543332222 22 6778999999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCC
Q 012064 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (471)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~ 294 (471)
..++++.++|+.|++||+...+.. ..+.......+.++-+|..+++++|.|+.+.+|-++...
T Consensus 262 -q~lIlSnsEDksirVwDm~kRt~v---------------~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleREr- 324 (1202)
T KOG0292|consen 262 -QDLILSNSEDKSIRVWDMTKRTSV---------------QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERER- 324 (1202)
T ss_pred -cceeEecCCCccEEEEecccccce---------------eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccC-
Confidence 689999999999999999887532 233344677899999999999999999988888775310
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
+ .. +. +++.|+..- |..|+.+|+.+
T Consensus 325 -----------------------------------------------p--a~--~v---~~n~LfYvk-d~~i~~~d~~t 349 (1202)
T KOG0292|consen 325 -----------------------------------------------P--AY--AV---NGNGLFYVK-DRFIRSYDLRT 349 (1202)
T ss_pred -----------------------------------------------c--eE--EE---cCCEEEEEc-cceEEeeeccc
Confidence 0 11 11 233444443 88999999987
Q ss_pred Ceee--EEecCC---CcceEEEEEcCCCCE-EEEeecC-CcEEEecCCC
Q 012064 375 GELI--RVIEAD---RHVVNCIEPHPHSTV-LASSGIE-SDIKILTPNA 416 (471)
Q Consensus 375 ~~~~--~~~~~h---~~~v~~~~~s~~~~~-l~s~~~d-g~i~iw~~~~ 416 (471)
.+-. ..++.. ..++.++.++|..+. |++...| |..-++.+..
T Consensus 350 ~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 350 QKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred cccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 5433 344433 357889999998774 4443333 4444555543
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=216.48 Aligned_cols=265 Identities=17% Similarity=0.218 Sum_probs=223.3
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEec
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 180 (471)
.+|.+.+.+++|+. +|..|++++.|+++++|+++...........+|.+.|-.++|+|..+.+|++++.|..|++||.
T Consensus 17 ~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhcceEEEEcc--cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 68899999999999 9999999999999999999887666666678999999999999999899999999999999999
Q ss_pred cCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCC
Q 012064 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (471)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (471)
+.+++...... ...-.-+.|+|+ +.+++.+..|..|.+.|.++.+.....+ .
T Consensus 95 r~~k~~~~i~~-----------~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~----------------~ 146 (313)
T KOG1407|consen 95 RSGKCTARIET-----------KGENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQ----------------F 146 (313)
T ss_pred ccCcEEEEeec-----------cCcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhc----------------c
Confidence 99998877763 223356889999 6899999999999999999877543321 2
Q ss_pred ccceEEEEEcCCCCeE-EEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecC
Q 012064 261 QVGITGLAFSDQSELL-VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (471)
Q Consensus 261 ~~~i~~~~~~~~~~~l-~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (471)
...+..++|+.++.++ ++.+.|+|.|..... .+++..++.|
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--------------------------------------Lkpv~si~AH 188 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--------------------------------------LKPVQSIKAH 188 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccc--------------------------------------cccccccccC
Confidence 4457788888666654 555578999988765 4667788888
Q ss_pred CceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 340 ~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
... +.|+.| +|+|+|+|+|+.|..+.+||++..-+++.+.-+..+|..+.||.||++||++|+|..|-|=++++|..
T Consensus 189 ~sn--CicI~f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 189 PSN--CICIEF-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred Ccc--eEEEEE-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 876 889998 99999999999999999999999888899999999999999999999999999999999999999887
Q ss_pred cccCcchheeehhhHHH
Q 012064 420 ATLPTNIEQAMMMTMTM 436 (471)
Q Consensus 420 ~~~~~~~~~~~~~~~~~ 436 (471)
..-.......+.+++++
T Consensus 266 ~~eI~~~~~t~tVAWHP 282 (313)
T KOG1407|consen 266 VWEIPCEGPTFTVAWHP 282 (313)
T ss_pred EEEeeccCCceeEEecC
Confidence 65555555555444443
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=214.23 Aligned_cols=276 Identities=14% Similarity=0.207 Sum_probs=220.2
Q ss_pred cccccEEEEEEcC-CCCEEEEecCCCeEEEEECCC-CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 59 KHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 59 ~h~~~V~~~~~s~-~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
.-.+.|.+++||| ...+++.+|.|++||+|+++. |....+-...|.++|.+++|+. ||..+++++.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEEcc
Confidence 4568899999999 456677899999999999987 4555555568999999999999 99999999999999999999
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCC-cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (471)
+++... +..|..+|..+.|-+... .+|++|+.|.+|+.||++...++..+..+ .+++++..-.
T Consensus 103 S~Q~~~---v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-----------eRvYa~Dv~~-- 166 (347)
T KOG0647|consen 103 SGQVSQ---VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-----------ERVYAADVLY-- 166 (347)
T ss_pred CCCeee---eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-----------ceeeehhccC--
Confidence 985543 788999999999987552 37899999999999999999888877743 3577776653
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~ 294 (471)
.+++++..++.|.+|++++...+. ......-+-.+++++..+|....+.|+ +|.+.+..++.+..
T Consensus 167 -pm~vVata~r~i~vynL~n~~te~-------------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 167 -PMAVVATAERHIAVYNLENPPTEF-------------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred -ceeEEEecCCcEEEEEcCCCcchh-------------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 378888999999999998764221 111222355689999988887767777 88988888876533
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc-------eeEeeeeeeeCCCCcEEEEeeCCCeE
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVNFFGPKCEYVVSGSDCGRI 367 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~s~~g~~l~~g~~dg~v 367 (471)
... ..|+.|.. .-.|++++| +|.-..|++++.||+.
T Consensus 233 ~~n------------------------------------FtFkCHR~~~~~~~~VYaVNsi~F-hP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 233 KDN------------------------------------FTFKCHRSTNSVNDDVYAVNSIAF-HPVHGTLVTAGSDGTF 275 (347)
T ss_pred cCc------------------------------------eeEEEeccCCCCCCceEEecceEe-ecccceEEEecCCceE
Confidence 222 23333331 234899999 9999999999999999
Q ss_pred EEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEe
Q 012064 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (471)
Q Consensus 368 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (471)
.+||-.....+...+.|..+|++.+|+.+|.++|-+
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999988888888888999999999999999988755
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-31 Score=235.27 Aligned_cols=271 Identities=19% Similarity=0.263 Sum_probs=228.7
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
.+.+|+|. ...|.+|+..+++.. .....+.+.|+++.|+++|.+||+|..+|.|.|||
T Consensus 188 ~n~laVal-g~~vylW~~~s~~v~---------------------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD 245 (484)
T KOG0305|consen 188 ANVLAVAL-GQSVYLWSASSGSVT---------------------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWD 245 (484)
T ss_pred CCeEEEEe-cceEEEEecCCCceE---------------------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEe
Confidence 44566665 457999999988865 23333489999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEE
Q 012064 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 169 (471)
..+.+.+..+...|...|-+++|. +..+.+|+.++.|..+|++..+.... .+.+|...|..+.|++++ ..+++|
T Consensus 246 ~~~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~-~~lASG 319 (484)
T KOG0305|consen 246 VKEQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDG-NQLASG 319 (484)
T ss_pred hhhccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCC-CeeccC
Confidence 999888888743499999999995 57899999999999999998876655 588899999999999999 579999
Q ss_pred ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe--CCCeEEEEEcCCCccCCCCCCCCC
Q 012064 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~ 247 (471)
+.|+.+.|||....++...+.. |...|.+++|+|-...+||+|+ .|+.|++||..+++.+...
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~----------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----- 384 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTE----------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----- 384 (484)
T ss_pred CCccceEeccCCCccccEEEec----------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----
Confidence 9999999999977666666553 7789999999999888999875 7999999999988754331
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEee---CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCC
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (471)
.....|.++.|++..+-|+++. ++.|.||+..+
T Consensus 385 -----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--------------------------------- 420 (484)
T KOG0305|consen 385 -----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--------------------------------- 420 (484)
T ss_pred -----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---------------------------------
Confidence 1257899999999987766553 56899999877
Q ss_pred CCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
...+..+.+|... |..+++ +|||..+++|+.|.++++|++-..
T Consensus 421 -----~~~~~~l~gH~~R--Vl~la~-SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 -----MKLVAELLGHTSR--VLYLAL-SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -----cceeeeecCCcce--eEEEEE-CCCCCEEEEecccCcEEeccccCC
Confidence 4567788999988 999998 999999999999999999998654
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.1e-31 Score=251.07 Aligned_cols=299 Identities=15% Similarity=0.211 Sum_probs=235.8
Q ss_pred cccccEEEEEEcCCCCEEEEec--CCCeEEEEECCC------------CceEEEeecCCCcceeEEEEecCCCCeEEEEE
Q 012064 59 KHRGCVNTVSFNTDGDILISGS--DDRRVILWDWKT------------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~--~d~~i~iwd~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 124 (471)
.+...|.+++.+|||..+|||+ .|+.++||+.+. .+.+.+ ...|.+.|.|+.|+| ||++||+|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~-m~~h~~sv~CVR~S~--dG~~lAsG 87 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT-MDDHDGSVNCVRFSP--DGSYLASG 87 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhee-eccccCceeEEEECC--CCCeEeec
Confidence 3457799999999999999999 899999998642 111222 367999999999999 99999999
Q ss_pred eCCCeEEEEeccc----------cC------cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcccee
Q 012064 125 AADGQVRHAQILE----------RG------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188 (471)
Q Consensus 125 ~~dg~i~iwd~~~----------~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 188 (471)
++|+.|.+|+... +. ......+.+|...|..++|+|++ .++++++.|++|.+|+.++.+....
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeee
Confidence 9999999999873 00 11334578899999999999998 6899999999999999999988887
Q ss_pred eeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEE
Q 012064 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA 268 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 268 (471)
+.. |...|..+.|+|- |++|++-+.|++|++|+..+........ .|+ ........+..+.
T Consensus 167 l~~----------H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It--~pf-------~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 167 LRG----------HQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSIT--KPF-------EESPLTTFFLRLS 226 (942)
T ss_pred eec----------ccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeec--cch-------hhCCCcceeeecc
Confidence 775 6668999999999 7999999999999999977644322210 011 1112245678999
Q ss_pred EcCCCCeEEEee--CC---cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCcee
Q 012064 269 FSDQSELLVSYN--DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (471)
Q Consensus 269 ~~~~~~~l~~~~--~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (471)
|+|||++|++.. ++ .+.|.+-.+ ...-..+-||..+
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~t--------------------------------------Wk~~~~LvGH~~p- 267 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGT--------------------------------------WKVDKDLVGHSAP- 267 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCC--------------------------------------ceeeeeeecCCCc-
Confidence 999999999875 22 577777654 3445778899886
Q ss_pred EeeeeeeeCCC------C-----------cEEEEeeCCCeEEEEEccCCeeeEEecC-CCcceEEEEEcCCCCEEEEeec
Q 012064 344 TVKGVNFFGPK------C-----------EYVVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGI 405 (471)
Q Consensus 344 ~i~~~~~~s~~------g-----------~~l~~g~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~ 405 (471)
+.++.| +|. . ..+|+|+.|++|.||.....+++..... ....|..++|+|||-.|..+|.
T Consensus 268 -~evvrF-nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 268 -VEVVRF-NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred -eEEEEe-ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 888888 651 1 1578899999999999877777655432 3457999999999999999999
Q ss_pred CCcEEEecCCCCCCccc
Q 012064 406 ESDIKILTPNAADRATL 422 (471)
Q Consensus 406 dg~i~iw~~~~~~~~~~ 422 (471)
||+|.+..++..+....
T Consensus 346 DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 346 DGTVALIHFEEKELGVA 362 (942)
T ss_pred CCeEEEEEcchHHhCcc
Confidence 99999999998776443
No 76
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=215.21 Aligned_cols=309 Identities=15% Similarity=0.206 Sum_probs=251.5
Q ss_pred cceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCC
Q 012064 38 ALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD 117 (471)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 117 (471)
..+++.-.+....+.+.+.+.||.+.|+.++.......+.+++.|.+-+||.+++|.++.++ .+|.+.|++++|++ .
T Consensus 125 srivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~--s 201 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHN--S 201 (481)
T ss_pred chheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEecc--c
Confidence 34666677777888999999999999999999887789999999999999999999999998 89999999999999 9
Q ss_pred CeEEEEEeCCCeEEEEec------cccC--------------------------------cceeeEeeceeeeEEEEEEc
Q 012064 118 DRSIVTCAADGQVRHAQI------LERG--------------------------------GVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 118 ~~~l~s~~~dg~i~iwd~------~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~ 159 (471)
+.++++++.|++..||.. ..+. .++...+.+|...|.+..|.
T Consensus 202 ~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL 281 (481)
T KOG0300|consen 202 GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL 281 (481)
T ss_pred cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh
Confidence 999999999999999972 1100 01223466789999999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
..+ ..+++++.|.+..+||+++++.+..+.. |....+.++-+|. ..++++++.|.+.++||++..-
T Consensus 282 ~gg-~Q~vTaSWDRTAnlwDVEtge~v~~LtG----------Hd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI-- 347 (481)
T KOG0300|consen 282 AGG-QQMVTASWDRTANLWDVETGEVVNILTG----------HDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAI-- 347 (481)
T ss_pred cCc-ceeeeeeccccceeeeeccCceeccccC----------cchhccccccCCc-ceEEEEeccCceeEeccchhhc--
Confidence 988 4689999999999999999999888765 5567888888998 6899999999999999998431
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
.....+.+|...|+++.|.-+. .+++++|+ +|++||+++.
T Consensus 348 ------------~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM-------------------------- 388 (481)
T KOG0300|consen 348 ------------QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM-------------------------- 388 (481)
T ss_pred ------------ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccc--------------------------
Confidence 2255678899999999998876 46667655 8999999874
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe-----cCCCcceEEEEE
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEP 393 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~~~~ 393 (471)
+.++.++..... ++.++. +..+..++.--++..|++||+. |..+..+ ++|..-|.+++|
T Consensus 389 -----------RsplATIRtdS~---~NRvav-s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW 452 (481)
T KOG0300|consen 389 -----------RSPLATIRTDSP---ANRVAV-SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAW 452 (481)
T ss_pred -----------cCcceeeecCCc---cceeEe-ecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeec
Confidence 233444443332 677776 7778889988889999999995 4444444 578889999999
Q ss_pred cCCCC--EEEEeecCCcEEEecCCCCC
Q 012064 394 HPHST--VLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 394 s~~~~--~l~s~~~dg~i~iw~~~~~~ 418 (471)
..+-. -|++++.|..+.=|++....
T Consensus 453 ~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 453 LEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccCcccccccccccceeeeeEecccC
Confidence 86543 58899999999999987643
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=8.9e-31 Score=220.49 Aligned_cols=277 Identities=19% Similarity=0.267 Sum_probs=227.7
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEE
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~ 86 (471)
.+....+++|+.|..+.++|...++.+ ..++||...|+.+.++|+...+++++.|..|+
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l---------------------~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~ 286 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQIL---------------------ATLKGHTKKITSVKFHKDLDTVITASADEIIR 286 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhh---------------------hhccCcceEEEEEEeccchhheeecCCcceEE
Confidence 344578999999999999999988877 68999999999999999999999999999999
Q ss_pred EEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEE
Q 012064 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (471)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (471)
||........... ..|.++|+.+..+| .|.||++++.||...+.|++++.......-....-.+++.+|+||| .+|
T Consensus 287 vws~~~~s~~~~~-~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lif 362 (506)
T KOG0289|consen 287 VWSVPLSSEPTSS-RPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIF 362 (506)
T ss_pred eeccccccCcccc-ccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEE
Confidence 9998877654444 78999999999999 9999999999999999999988876542222233458999999999 789
Q ss_pred EEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCC
Q 012064 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (471)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (471)
.+|..|+.+++||+.++.....|.. |.++|..++|+.+ |.++++++.|+.|++||+|..+....
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpg----------ht~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt----- 426 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPG----------HTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKT----- 426 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCC----------CCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccce-----
Confidence 9999999999999999887666654 7779999999997 89999999999999999998763322
Q ss_pred CCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCC
Q 012064 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
+......++.++.|.+.|.+|+.++.+ +|++++-.+..
T Consensus 427 ---------~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~-------------------------------- 465 (506)
T KOG0289|consen 427 ---------IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS-------------------------------- 465 (506)
T ss_pred ---------eeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc--------------------------------
Confidence 222234479999999999999988655 67777644321
Q ss_pred CcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
...+..+..|.+. .+++.| ..+.+++++++.|..++++.+
T Consensus 466 ----W~~~~~~~~~sg~--st~v~F-g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 ----WTEIKELADHSGL--STGVRF-GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ----ceeeehhhhcccc--cceeee-cccceEEeeccchhheEEeec
Confidence 3345555556644 677787 999999999999999888754
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.9e-30 Score=218.52 Aligned_cols=283 Identities=15% Similarity=0.260 Sum_probs=237.6
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 141 (471)
..++++...|....+++|+.|..+.++|..+++.+..+ +||...|+.+.|+| +...+++++.|..|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEecc--chhheeecCCcceEEeeccccccCc
Confidence 57889999888789999999999999999998887776 89999999999999 9999999999999999998777655
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
.. ...|..+|+.+..+|.|. +|++++.|++..+.|++++.......... ....+++.+|+|| |.+|.+
T Consensus 297 ~~--~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------s~v~~ts~~fHpD-gLifgt 364 (506)
T KOG0289|consen 297 TS--SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDET--------SDVEYTSAAFHPD-GLIFGT 364 (506)
T ss_pred cc--cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeecc--------ccceeEEeeEcCC-ceEEec
Confidence 44 778999999999999995 68999999999999999998776554211 3346899999999 799999
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPS 300 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~ 300 (471)
|..||.+++||+.+... ...+.+|.++|..++|+.+|.+|+++.++ .|++||++..+...
T Consensus 365 gt~d~~vkiwdlks~~~---------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k---- 425 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTN---------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK---- 425 (506)
T ss_pred cCCCceEEEEEcCCccc---------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc----
Confidence 99999999999988652 23456689999999999999999999966 59999998754322
Q ss_pred CCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc--cCCeee
Q 012064 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELI 378 (471)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~--~~~~~~ 378 (471)
++.-.... .+.++.| ++.|.+|+.++.|=.|++++- +++..+
T Consensus 426 ----------------------------------t~~l~~~~-~v~s~~f-D~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 426 ----------------------------------TIQLDEKK-EVNSLSF-DQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred ----------------------------------eeeccccc-cceeEEE-cCCCCeEEeecceeEEEEEecccccceee
Confidence 22222211 2788898 999999999987766666663 356778
Q ss_pred EEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 379 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888889999999999999999999999999988764
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=242.44 Aligned_cols=254 Identities=15% Similarity=0.186 Sum_probs=201.4
Q ss_pred CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC----------------------------c--c----------
Q 012064 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG----------------------------G--V---------- 141 (471)
Q Consensus 102 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------------~--~---------- 141 (471)
.|.+.|+++.|++ ||+|||+|+.||.|+||.+...+ . .
T Consensus 265 ah~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 8999999999999 99999999999999999986600 0 0
Q ss_pred ------------------eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceee
Q 012064 142 ------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 142 ------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (471)
+...+.+|.+.|.++.|+.++ +|++++.|.++++|++...+++..|. |.
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-----------Hn 409 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-----------HN 409 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-----------cC
Confidence 001245799999999999876 68999999999999999999999987 88
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~ 282 (471)
..|+|++|+|-+.++|++|+-||.+|||++...+... ...-..-|++++|.|||++.+.|+ +|
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~----------------W~Dl~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD----------------WNDLRDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEe----------------ehhhhhhheeEEeccCCceEEEEEecc
Confidence 8999999999989999999999999999998876432 222356799999999999999988 88
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
.+++|+....+........ ....+... |. .|+.+.|+..+-..+++.+
T Consensus 474 ~C~fY~t~~lk~~~~~~I~----------------------------~~~~Kk~~-~~---rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 474 YCRFYDTEGLKLVSDFHIR----------------------------LHNKKKKQ-GK---RITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred EEEEEEccCCeEEEeeeEe----------------------------eccCcccc-Cc---eeeeeEecCCCCCeEEEec
Confidence 9999998764322211100 00001111 11 3899998433444677778
Q ss_pred CCCeEEEEEccCCeeeEEecCCCc--ceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 363 DCGRIFIWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
.|..|||||..+.+++..++++.. .-....|+.||++|+++++|..|+||+.....
T Consensus 522 nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 522 NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 899999999988889999987643 45677899999999999999999999986543
No 80
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-30 Score=233.86 Aligned_cols=353 Identities=14% Similarity=0.200 Sum_probs=254.7
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~ 90 (471)
+.++.|+.+|.++|||+.+++.+ .+++++...|+++.=+|--..+|.|..+|+|.++++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v---------------------~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl 231 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVV---------------------YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL 231 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEE---------------------EEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence 56899999999999999999988 799999999999999999999999999999999999
Q ss_pred CCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEE
Q 012064 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 169 (471)
+.++.+.++. ...+.|++++|.. ||+.+. +++..|.+.+||++..+... .....|.+.+....|.|..+ ++++.
T Consensus 232 K~dkil~sFk-~d~g~VtslSFrt--DG~p~las~~~~G~m~~wDLe~kkl~~-v~~nah~~sv~~~~fl~~ep-Vl~ta 306 (910)
T KOG1539|consen 232 KFDKILMSFK-QDWGRVTSLSFRT--DGNPLLASGRSNGDMAFWDLEKKKLIN-VTRNAHYGSVTGATFLPGEP-VLVTA 306 (910)
T ss_pred ccCcEEEEEE-ccccceeEEEecc--CCCeeEEeccCCceEEEEEcCCCeeee-eeeccccCCcccceecCCCc-eEeec
Confidence 9999999993 2259999999998 887655 55556999999997766554 33557889999999999884 89999
Q ss_pred ecCCeEEEEeccCCccce-eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCC----
Q 012064 170 GEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF---- 244 (471)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 244 (471)
+.|+.+++|=..++.-.. .++.. .+ |..+..++.|.-.++..+.+++.|++++.+++......+....
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R-----~G--Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~ 379 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSR-----GG--HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK 379 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeec-----cC--CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence 999999988666544322 22211 12 6668899999976689999999999998888754322111100
Q ss_pred ----------------CCCC------------------------------------CcCCCCcccCCCccceEEEEEcCC
Q 012064 245 ----------------GQPA------------------------------------DYFCPPNLIGDEQVGITGLAFSDQ 272 (471)
Q Consensus 245 ----------------~~~~------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~ 272 (471)
.+.. +..-.+.........+++++.++.
T Consensus 380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C 459 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC 459 (910)
T ss_pred cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence 0000 000000011112356778888888
Q ss_pred CCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 273 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
|++.+.|. .|.|.+|++.++.....+.. -..|..+ |+.++.
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----------------------------------~~ah~~~--V~gla~- 501 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----------------------------------SPAHKGE--VTGLAV- 501 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeeccccc-----------------------------------CccccCc--eeEEEe-
Confidence 88877665 66888888887654433310 1234433 666665
Q ss_pred CCCCcEEEEeeCCCeEEEEEcc-----------------------------------------CCeeeEEecCCCcceEE
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKK-----------------------------------------GGELIRVIEADRHVVNC 390 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~-----------------------------------------~~~~~~~~~~h~~~v~~ 390 (471)
+.-++.+++++.+|.+.+||.+ +.+.++.+.+|.+.|++
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 5555666666666666666654 33444566789999999
Q ss_pred EEEcCCCCEEEEeecCCcEEEecCCCCCCcccCcchheeehhhH
Q 012064 391 IEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQAMMMTM 434 (471)
Q Consensus 391 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
++|||||++|++++.|++|++||+.++.+.....-......++|
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~ 625 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSF 625 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEE
Confidence 99999999999999999999999999877443333333333333
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-30 Score=229.59 Aligned_cols=274 Identities=18% Similarity=0.262 Sum_probs=225.8
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeE
Q 012064 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (471)
Q Consensus 66 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 145 (471)
-++|+ ..+.||.|.. ..|.+|+..+++..... ..+...|+++.|++ +|.+|++|..+|.+.|||..+.+.+..
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~~-- 254 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTRT-- 254 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhhcccccc--
Confidence 35677 3456777654 47999999988864444 44488999999999 999999999999999999988887765
Q ss_pred eec-eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcccee-eeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 146 LGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 146 ~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
+.+ |...|.+++|.. ..+.+|+.|+.|..+|++..+.... +.. |...|..+.|++| +.++|+|+
T Consensus 255 ~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~----------H~qeVCgLkws~d-~~~lASGg 320 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQG----------HRQEVCGLKWSPD-GNQLASGG 320 (484)
T ss_pred ccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhc----------ccceeeeeEECCC-CCeeccCC
Confidence 666 999999999993 5689999999999999998876554 221 6678999999999 79999999
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC-CCeEEEee---CCcEEEEecCCCCCCCCCC
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN---DEFIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~---~~~i~i~d~~~~~~~~~~~ 299 (471)
.|+.+.|||....+ +...+..|.+.|..++|+|- ..+||+|+ |..|++||..++.....
T Consensus 321 nDN~~~Iwd~~~~~---------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-- 383 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPE---------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-- 383 (484)
T ss_pred CccceEeccCCCcc---------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc--
Confidence 99999999995443 34566778999999999994 45788776 55899999987643332
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE--eeCCCeEEEEEccCCee
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGEL 377 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~--g~~dg~v~iwd~~~~~~ 377 (471)
..... .|..+.| ++..+-|++ |..++.|.||+..+.+.
T Consensus 384 ------------------------------------vdtgs---QVcsL~W-sk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 384 ------------------------------------VDTGS---QVCSLIW-SKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred ------------------------------------cccCC---ceeeEEE-cCCCCEEEEecCCCCCcEEEEeccccce
Confidence 11111 2889999 998876665 45678999999999999
Q ss_pred eEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 378 IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 378 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999999774
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.1e-30 Score=206.97 Aligned_cols=275 Identities=18% Similarity=0.226 Sum_probs=216.8
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
-.+.|..+.|+|.+..|+.++.||++++||+...+....+ .|..++.+++|. |...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFA---DESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeecc---CCceEEEeccCceEEEEEecCCc
Confidence 3678999999999999999999999999999988665555 688999999998 57789999999999999998887
Q ss_pred cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
... +..|..++.++.+.+.. ..+++|+.|++|++||.++......+. ....|.++... ++.|
T Consensus 87 ~~~---igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d-----------~~kkVy~~~v~---g~~L 148 (323)
T KOG1036|consen 87 EDQ---IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFD-----------QGKKVYCMDVS---GNRL 148 (323)
T ss_pred cee---eccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccc-----------cCceEEEEecc---CCEE
Confidence 654 67899999999999876 478999999999999999855544443 33478888876 4689
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~ 298 (471)
++|+.+..+.+||+++..... ......-+-.++++++.|++.-.+.++ +|.+.+=.++.....
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~-------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--- 212 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPF-------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--- 212 (323)
T ss_pred EEeecCceEEEEEcccccchh-------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH---
Confidence 999999999999999875321 111222356789999999776555555 887665444332110
Q ss_pred CCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCC-------ceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-------NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
......|+.|. ...+|++++| +|-.+.||+|+.||.|-+||
T Consensus 213 -------------------------------~skkyaFkCHr~~~~~~~~~yPVNai~F-hp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 213 -------------------------------QSKKYAFKCHRLSEKDTEIIYPVNAIAF-HPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred -------------------------------hhhceeEEeeecccCCceEEEEeceeEe-ccccceEEecCCCceEEEcc
Confidence 11122333332 2234999999 99999999999999999999
Q ss_pred ccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec
Q 012064 372 KKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (471)
Q Consensus 372 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (471)
+.+.+.+.++..-...|..++|+.||..||.++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999888877788999999999999999864
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-29 Score=205.40 Aligned_cols=297 Identities=19% Similarity=0.309 Sum_probs=223.5
Q ss_pred EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 012064 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (471)
Q Consensus 12 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~ 91 (471)
.+++|+....|.=+++.-.. - .-.+.....+.....++.|.++|++++.+ +.++|+||.|-+|+|||+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-~--------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-K--------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR 71 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-c--------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEecc
Confidence 47888888877777665111 0 00111233456677888999999999995 8999999999999999999
Q ss_pred CCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEec
Q 012064 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 171 (471)
+...+..+ ..|.+.|+++.|.+....+.|++|++||.|.+|+...-+... .+.+|.+.|+.++++|.+ ++.++.+.
T Consensus 72 k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~--slK~H~~~Vt~lsiHPS~-KLALsVg~ 147 (362)
T KOG0294|consen 72 KRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK--SLKAHKGQVTDLSIHPSG-KLALSVGG 147 (362)
T ss_pred chhhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee--eecccccccceeEecCCC-ceEEEEcC
Confidence 88887777 579999999999983223489999999999999987665544 489999999999999999 68999999
Q ss_pred CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcC
Q 012064 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (471)
|+.+++||+-+++......... ....+.|+|. |.+++.+..+ .|-+|.+.+..+.....+
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~-----------~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~------- 207 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKN-----------KATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN------- 207 (362)
T ss_pred CceeeeehhhcCccceeeccCC-----------cceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc-------
Confidence 9999999999998776665432 3455999999 5677776665 599999987664332111
Q ss_pred CCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccccc
Q 012064 252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (471)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (471)
...+.++.|...+.+++.+.++.|.+||.+. ..
T Consensus 208 ---------~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds--------------------------------------~~ 240 (362)
T KOG0294|consen 208 ---------PKRILCATFLDGSELLVGGDNEWISLKDTDS--------------------------------------DT 240 (362)
T ss_pred ---------cccceeeeecCCceEEEecCCceEEEeccCC--------------------------------------Cc
Confidence 2447778887766666666677899999876 34
Q ss_pred CCeeeecCCceeEeeeeee-eCCCCcEEEEeeCCCeEEEEEccCC-----eeeEEecCCCcceEEEEE
Q 012064 332 APQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGG-----ELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~-~s~~g~~l~~g~~dg~v~iwd~~~~-----~~~~~~~~h~~~v~~~~~ 393 (471)
+...+.+|... |-.+.+ -.|++.||++++.||.|++||+... +++..+.. ..+++|+..
T Consensus 241 ~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 241 PLTEFLAHENR--VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred cceeeecchhh--eeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 56778889887 777773 3678899999999999999999755 34444433 334455443
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=2.5e-31 Score=214.54 Aligned_cols=306 Identities=16% Similarity=0.170 Sum_probs=231.6
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.+.|++||.++|+|+.|.+|+|.|++..-.. . .+......+...+.+++++|..|.++|+++.|+|....|++|+.|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlak-s--~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAK-S--KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhh-c--chhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 4789999999999999999999999832111 1 111112223333457889999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee-eEeeceeeeEEEEEEcc
Q 012064 83 RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~ 160 (471)
++|++||+......+.+. .....+|.++.|+| .|.+|+.|..-.++++||+.+-++... ..-.+|.+.|+++.+++
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence 999999997654322221 12346899999999 999999999999999999998776432 22457999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
.+ ++.++++.||.|++||--+++++..+.... ....|.+..|..+ ++++++.+.|..+++|.+.+++...
T Consensus 272 t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH--------~gsevcSa~Ftkn-~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 272 TG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAH--------GGSEVCSAVFTKN-GKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred Cc-cEEEEeccCCcEEeeccccHHHHHHHHhhc--------CCceeeeEEEccC-CeEEeecCCcceeeeeeecCCceEE
Confidence 99 689999999999999999999888776432 4567899999998 7899999999999999999887443
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
.+.-.. ..+....-+...|+....|++.-. .+.+.-||.++.....
T Consensus 342 ~YtGAg----------~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~---------------------- 389 (430)
T KOG0640|consen 342 EYTGAG----------TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA---------------------- 389 (430)
T ss_pred EEecCC----------cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh----------------------
Confidence 211100 001112224455777677776665 3468889988753221
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
..--+|.+. +..+.. +|.+.-+++|+.|-.+|+|--+
T Consensus 390 ---------------l~slgHn~a--~R~i~H-SP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 ---------------LLSLGHNGA--VRWIVH-SPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ---------------hcccCCCCC--ceEEEe-CCCCCceeeecccceeeeeeec
Confidence 122467765 788886 9999999999999999999743
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=223.41 Aligned_cols=279 Identities=18% Similarity=0.230 Sum_probs=222.5
Q ss_pred CCCCCCCCCCcE-EEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 1 MDDASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 1 ~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
++++.|+|..++ +|+.+ .-.+.||+..+.... +.+......|+++.|-.||++||.|
T Consensus 29 vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~---------------------k~~srFk~~v~s~~fR~DG~LlaaG 86 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR---------------------KTFSRFKDVVYSVDFRSDGRLLAAG 86 (487)
T ss_pred ceeEecCCCCCCceEEec-ccEEEEEecchhhhh---------------------hhHHhhccceeEEEeecCCeEEEcc
Confidence 356778887665 55544 557999998866655 4455667889999999999999999
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+..|.|+|||..+...++.+ .+|+.++..+.|+|. ++..+++|++|+.+++||+.+... ...+.+|++.|.+.+|+
T Consensus 87 D~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDIS 162 (487)
T ss_pred CCcCcEEEeccccHHHHHHH-hhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccc
Confidence 99999999996654444455 899999999999993 677788899999999999987764 34589999999999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
|..++++++|+.||.|++||++.. ..+..+. |..+|..+.+-|. +.++++++. ..+++||+-++..
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-----------hg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~q 229 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-----------HGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQ 229 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-----------CCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCce
Confidence 998899999999999999999988 4444444 6778999999998 678887764 5799999986542
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
. ......|...|+|+.+..++..|++++ |+.+++||+.+-
T Consensus 230 l--------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------------------------- 270 (487)
T KOG0310|consen 230 L--------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------------------------- 270 (487)
T ss_pred e--------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-------------------------
Confidence 1 233444788999999999999999998 889999997552
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
+.+..+ .-+.+|.+++. +|+++.++.|..||.+.+-+...
T Consensus 271 -------------Kvv~s~---~~~~pvLsiav-s~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 271 -------------KVVHSW---KYPGPVLSIAV-SPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred -------------EEEEee---ecccceeeEEe-cCCCceEEEecccceeeeehhhc
Confidence 222222 22224999998 99999999999999988775433
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=5.9e-30 Score=236.40 Aligned_cols=279 Identities=20% Similarity=0.290 Sum_probs=240.2
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
|...+.+..|. ..++++++.+++|++||..++..+..-+.+|.+.|.++++.. .+.++++|+.|.++++||..+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCCCc
Confidence 56788899998 568999999999999999999998884589999999999986 68999999999999999999988
Q ss_pred cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
+... +.+|.+.+.++...+ ..+++|+.|.+|++|+++++..+..+.. |...|+++..+ +.++
T Consensus 283 C~~~--l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~----------h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 283 CTHS--LQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRG----------HTGPVNCVQLD---EPLL 344 (537)
T ss_pred EEEE--ecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEecc----------ccccEEEEEec---CCEE
Confidence 8766 889999999998876 4578899999999999999998888764 56689999998 3589
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~ 298 (471)
++|+.|+.|++||..+.+.. ....+|...|.++.+.+. ..+++|+ |+.|++||+++.
T Consensus 345 vsgs~d~~v~VW~~~~~~cl---------------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~------ 402 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGKCL---------------KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK------ 402 (537)
T ss_pred EEEecCceEEEEEhhhceee---------------eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCch------
Confidence 99999999999999987643 345568999999988776 6888888 778999999874
Q ss_pred CCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee
Q 012064 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (471)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~ 378 (471)
..++..+.+|..- +..+. ..+++|++++.|++|++||..+++++
T Consensus 403 -------------------------------~~c~~tl~~h~~~--v~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 403 -------------------------------RKCIHTLQGHTSL--VSSLL---LRDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred -------------------------------hhhhhhhcCCccc--ccccc---cccceeEeccccccEEEeecccCcee
Confidence 1567788888875 55544 36789999999999999999999999
Q ss_pred EEecC-CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 379 RVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 379 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
..+.+ |.+.|..+++. ...+++++.||.+++||+++++..
T Consensus 447 ~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 99999 67889998886 567888999999999999988763
No 87
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.98 E-value=1.3e-29 Score=230.20 Aligned_cols=323 Identities=20% Similarity=0.330 Sum_probs=259.3
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCC-EEEEecCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGSDD 82 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~-~l~s~~~d 82 (471)
+.-+|--..+|.|..+|+|.++|+..++.+ .+++.-.++|++++|..||. .+|+|+..
T Consensus 208 ieqsPaLDVVaiG~~~G~ViifNlK~dkil---------------------~sFk~d~g~VtslSFrtDG~p~las~~~~ 266 (910)
T KOG1539|consen 208 IEQSPALDVVAIGLENGTVIIFNLKFDKIL---------------------MSFKQDWGRVTSLSFRTDGNPLLASGRSN 266 (910)
T ss_pred eccCCcceEEEEeccCceEEEEEcccCcEE---------------------EEEEccccceeEEEeccCCCeeEEeccCC
Confidence 344566677999999999999999988877 57774469999999999995 66788888
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee--eE------------e--
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET--KL------------L-- 146 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~------------~-- 146 (471)
|.+.+||++..+........|.+.|....|.| ....+++++.|..+++|-.+++...++ +. +
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~--~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLP--GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG 344 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCcccceecC--CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence 99999999988887777678988999999998 888888888888888875542221000 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 012064 147 -------------------------------------------------------------------------------- 146 (471)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (471)
T Consensus 345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence
Q ss_pred ----------e----cee------eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 147 ----------G----KHQ------GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 147 ----------~----~~~------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
. .+. ..+++++.++.| ++.+.|+..|.|-+|++.+|-....+... ..|..+|
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~~-------~ah~~~V 496 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGDS-------PAHKGEV 496 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecccccC-------ccccCce
Confidence 0 011 457788888888 57788999999999999998776666411 1277789
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIY 285 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~ 285 (471)
..++.+.- ++.+++++.+|.+.+||+.+..+.....+ ...+..+..+.....++.+.++ .|+
T Consensus 497 ~gla~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~l----------------~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 497 TGLAVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLRL----------------GSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eEEEecCC-CceEEEccCcceEEEEecCCcceeeeecc----------------CCCcceeeeeehhhhhhhhcCceeEE
Confidence 99999988 57899999999999999998765544333 3456777777777788877766 899
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
++|..+ +..++.+.||.+. |++++| ||||++|++++.|+
T Consensus 560 vvD~~t--------------------------------------~kvvR~f~gh~nr--itd~~F-S~DgrWlisasmD~ 598 (910)
T KOG1539|consen 560 VVDVVT--------------------------------------RKVVREFWGHGNR--ITDMTF-SPDGRWLISASMDS 598 (910)
T ss_pred EEEchh--------------------------------------hhhhHHhhccccc--eeeeEe-CCCCcEEEEeecCC
Confidence 999977 5678889999998 999999 99999999999999
Q ss_pred eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecC-CcEEEecCCC
Q 012064 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-SDIKILTPNA 416 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~ 416 (471)
+|++||+.++.++-.+. -..+.+++.|+|.|.+|||+..| .-|++|.-.+
T Consensus 599 tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 599 TIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 99999999999987764 35689999999999999999988 6699997654
No 88
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=3.4e-29 Score=222.93 Aligned_cols=357 Identities=15% Similarity=0.227 Sum_probs=256.2
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccc----cccceec-----ccc-cceeeeeeeEEeccccccEEEEEEcCCCCEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTR----NFALRRR-----ASE-DLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~-----~~~-~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s 78 (471)
+.-+||+++.|..||||.+.-+..... ....... ... ....+......+.||.+.|.++.|+|++..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 345799999999999999875542221 0000000 011 001112222455699999999999999999999
Q ss_pred ecCCCeEEEEECCCCceEE----Ee--ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc-cCcceeeEeeceee
Q 012064 79 GSDDRRVILWDWKTERVKL----SF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKHQG 151 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~----~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~ 151 (471)
++.|.++.+|.-.+..-+. ++ ..+.....+...|+| +++.+++-+..|..++|...+ ....+.....+|.+
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD 362 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence 9999999999876542211 11 123455688999999 999999999999999999333 23345556789999
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc-eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
.|.+++|+|.|. ++++.+.|.+-|+|-.-..+.. ..+..++ .|...++|++|-+. ...|++|.....+|+
T Consensus 363 ~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-------iHGyDl~c~~~vn~-~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 363 GVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQ-------IHGYDLTCLSFVNE-DLQFVSGADEKVLRV 433 (764)
T ss_pred cceeeeecCCCC-EEEEeccccceeeecccccccceeeecccc-------cccccceeeehccC-Cceeeecccceeeee
Confidence 999999999995 7899999999999976522221 1111111 16668899999985 578999999999999
Q ss_pred EEcCCC-----------ccCCC--C---------------CC-------------------CCCCCcCCCC---------
Q 012064 231 YDIRKY-----------KWDGS--T---------------DF-------------------GQPADYFCPP--------- 254 (471)
Q Consensus 231 ~d~~~~-----------~~~~~--~---------------~~-------------------~~~~~~~~~~--------- 254 (471)
|+.... ..... . -+ ..|.....|+
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 986421 00000 0 00 0010000111
Q ss_pred -----cccCCCccceEEEEEcCCCCeEEEeeCC------cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 255 -----NLIGDEQVGITGLAFSDQSELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 255 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
+..-+|...|.+++.+|+++++|++... .|++|+..+
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-------------------------------- 561 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-------------------------------- 561 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--------------------------------
Confidence 1234577889999999999999998722 399999876
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee----eEEecCCCcceEEEEEcCCCCE
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL----IRVIEADRHVVNCIEPHPHSTV 399 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~ 399 (471)
......+.+|.-. |+.+.| ||||+||++.+.|.++.+|....... ....+.|+.-|.++.|+|++.+
T Consensus 562 ------W~~~~~L~~HsLT--VT~l~F-Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 562 ------WLQVQELEGHSLT--VTRLAF-SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred ------hhhhheecccceE--EEEEEE-CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 3445678888865 999999 99999999999999999999754322 2346889999999999999999
Q ss_pred EEEeecCCcEEEecCCCC
Q 012064 400 LASSGIESDIKILTPNAA 417 (471)
Q Consensus 400 l~s~~~dg~i~iw~~~~~ 417 (471)
++|+|.|.+|++|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 999999999999999876
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=232.32 Aligned_cols=389 Identities=14% Similarity=0.124 Sum_probs=258.4
Q ss_pred CCCCCCCCCCcEEEEec--CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE
Q 012064 1 MDDASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s 78 (471)
+..++|+++|+++|+|- ..-.+++|++.+...+ ..|..|.-.|+|++|+|.++|+++
T Consensus 81 ~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV---------------------AEfvdHKY~vtcvaFsp~~kyvvS 139 (1080)
T KOG1408|consen 81 LTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVV---------------------AEFVDHKYNVTCVAFSPGNKYVVS 139 (1080)
T ss_pred eeEEEEcCCCcEEEecccCCCccceeeeeccccch---------------------hhhhhccccceeeeecCCCcEEEe
Confidence 35689999999999986 6789999999976655 678899999999999999999998
Q ss_pred ecC--CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee-eEee--------
Q 012064 79 GSD--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLG-------- 147 (471)
Q Consensus 79 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-------- 147 (471)
.+. |-.|.+||+........ ..-...|..++|+. |+.|+++++ ...|++|.++.++.... ..+.
T Consensus 140 VGsQHDMIVnv~dWr~N~~~as--nkiss~Vsav~fsE--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~ 214 (1080)
T KOG1408|consen 140 VGSQHDMIVNVNDWRVNSSGAS--NKISSVVSAVAFSE--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGN 214 (1080)
T ss_pred eccccceEEEhhhhhhcccccc--cccceeEEEEEEcc--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccc
Confidence 776 44677888765443322 23456889999999 999999987 46899999976652210 0000
Q ss_pred --------------------------c-----------------eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc
Q 012064 148 --------------------------K-----------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (471)
Q Consensus 148 --------------------------~-----------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (471)
+ .+....||+++. .+++.|+.+|.|++|+.++-.
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~---r~I~cgCa~g~vrlFnp~tL~ 291 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS---RLIACGCAKGMVRLFNPETLD 291 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec---ceEEEeeccceeeecCcchhh
Confidence 0 112234455543 578999999999999988765
Q ss_pred cceeeeecccCC--------------cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCc
Q 012064 185 ATELFTCRPIDD--------------RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (471)
Q Consensus 185 ~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (471)
...++....... ..........-++.|+|. ...+.+...|..+++||++..+....
T Consensus 292 y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk--------- 361 (1080)
T KOG1408|consen 292 YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGK--------- 361 (1080)
T ss_pred hccccccccccccchhhcccccccccccCcccCCceeEEEecCC-CceEEEEEcCceEEEEeccccccccc---------
Confidence 554433211100 000001223457889998 57898999999999999998654432
Q ss_pred CCCCcccCCCccceEEEEEcC------------CCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 251 FCPPNLIGDEQVGITGLAFSD------------QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
....--|...|+.+.--| .+-++.+.+|++|++|++..+..-..+................+...
T Consensus 362 ---~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 362 ---CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ---eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 122223455555554433 34444455588999999987543333221111111110000011111
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcC-C-
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP-H- 396 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~- 396 (471)
+................+.+. ..+.+++. +|+|++||+|..-|.++||++...+....+.+|...|.++.++- +
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r---~G~R~~~v-Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~ 514 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSR---FGFRALAV-SPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL 514 (1080)
T ss_pred hhhhccCCcccccchhhcCcc---cceEEEEE-CCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh
Confidence 100000000001111122222 23899998 99999999999999999999999999899999999999999984 2
Q ss_pred -CCEEEEeecCCcEEEecCCCCCC--cccCcchheeehhhHH
Q 012064 397 -STVLASSGIESDIKILTPNAADR--ATLPTNIEQAMMMTMT 435 (471)
Q Consensus 397 -~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~ 435 (471)
.++||+++.|..|.|+|+...-. .++-+|...+...+|.
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 45899999999999999976543 5677777777777663
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=8.5e-30 Score=235.33 Aligned_cols=274 Identities=23% Similarity=0.374 Sum_probs=227.0
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
..++++++.|++|.+|+..++..+. ..+.||.+.|+++++..-+.+|++|+.|.++++||
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~--------------------~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLIL--------------------TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEE--------------------eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 5688999999999999999888773 44999999999999987788999999999999999
Q ss_pred CCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEE
Q 012064 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 169 (471)
..+|++...+ .+|.+.|.++... +..+++|+.|.+|++|++.++..+.. +.+|.++|.++..+ + .++++|
T Consensus 278 ~~sg~C~~~l-~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~--~-~~lvsg 347 (537)
T KOG0274|consen 278 CSTGECTHSL-QGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLD--E-PLLVSG 347 (537)
T ss_pred cCCCcEEEEe-cCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE--eccccccEEEEEec--C-CEEEEE
Confidence 9999998888 7999999999884 47888899999999999998887765 67799999999998 3 478999
Q ss_pred ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC-ccCCCCCCCCCC
Q 012064 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFGQPA 248 (471)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~ 248 (471)
+.|++|++||+.+++++..+.. |...|.++.+.+. ..+++|+.|+.|++||+++. +.
T Consensus 348 s~d~~v~VW~~~~~~cl~sl~g----------H~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c---------- 405 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGKCLKSLSG----------HTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC---------- 405 (537)
T ss_pred ecCceEEEEEhhhceeeeeecC----------CcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----------
Confidence 9999999999999999888875 6678999988763 68999999999999999987 42
Q ss_pred CcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCc
Q 012064 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (471)
.....+|..-+..+.+ .+++|++++ |++|++||...+
T Consensus 406 -----~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~----------------------------------- 443 (537)
T KOG0274|consen 406 -----IHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG----------------------------------- 443 (537)
T ss_pred -----hhhhcCCccccccccc--ccceeEeccccccEEEeecccC-----------------------------------
Confidence 2334455665644443 456888887 779999999885
Q ss_pred ccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCC
Q 012064 328 DVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (471)
Q Consensus 328 ~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~ 385 (471)
.+.+.+.+ |... +..+++ . ...+++++.||.+++||+.+++..+.+-.+.
T Consensus 444 ---~~~~~~~~~~~~~--v~~l~~-~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 444 ---ECLRTLEGRHVGG--VSALAL-G--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred ---ceeeeeccCCccc--EEEeec-C--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 44556666 3333 666665 3 4678889999999999999999887774433
No 91
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.8e-29 Score=233.08 Aligned_cols=272 Identities=16% Similarity=0.187 Sum_probs=199.1
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEE------------EeecCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL------------SFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
|-..|.....++|+..+++++.+.....|+...+..+. ..+.+|.+.|.+++|+|+ ++++|++++.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence 44556666777787777777777777778754433221 123689999999999994 57899999999
Q ss_pred CeEEEEeccccCc-----ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCccee
Q 012064 128 GQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 128 g~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
++|++||+.++.. .....+.+|...|.+++|+|++.++|++++.|+.|++||+++++....+.. +
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~----------h 167 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC----------H 167 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC----------C
Confidence 9999999976532 122347889999999999998767899999999999999999877665543 4
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc-ceEEEEEcCCCCeEEEee-
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSYN- 280 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~- 280 (471)
...|.+++|+|+ +.+|++++.|+.|++||+++++... ....|.. ....+.|.+++..+++++
T Consensus 168 ~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~---------------tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 168 SDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVS---------------SVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred CCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEE---------------EEecCCCCcceEEEEcCCCCeEEEEec
Confidence 557999999998 7899999999999999999875321 1222333 345678899887776543
Q ss_pred ----CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc
Q 012064 281 ----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (471)
Q Consensus 281 ----~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~ 356 (471)
++.|++||++.... .......+... .+....| +++++
T Consensus 232 s~s~Dr~VklWDlr~~~~-------------------------------------p~~~~~~d~~~-~~~~~~~-d~d~~ 272 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMAS-------------------------------------PYSTVDLDQSS-ALFIPFF-DEDTN 272 (493)
T ss_pred CCCCCCeEEEEeCCCCCC-------------------------------------ceeEeccCCCC-ceEEEEE-cCCCC
Confidence 45899999876321 11122212211 1333444 99999
Q ss_pred EEEEee-CCCeEEEEEccCCeeeEEecC-CCcceEEEEEcCCC
Q 012064 357 YVVSGS-DCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHS 397 (471)
Q Consensus 357 ~l~~g~-~dg~v~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~ 397 (471)
+|++|+ .|+.|++||+.+++....... +..++..++|.|..
T Consensus 273 ~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 273 LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 999887 599999999999887766543 44567888888854
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=3e-30 Score=219.01 Aligned_cols=266 Identities=19% Similarity=0.169 Sum_probs=207.1
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++.+|++++..+++.||+|.=|++.+|+.............. ....++..+ ++|...|.+++.|+||+|||+|+.
T Consensus 146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-ccCCCCccc--ccccceeEEEEEcCCCcEEEecCC
Confidence 35778999999999999999999999999865322211100000 001111112 489999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|..|.||+.++.+.+..+ .+|.+.|.+++|-. ....+++++.|..+++|+++....+.+ +.+|.+.|.++....-
T Consensus 223 d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vet--lyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVET--LYGHQDGVLGIDALSR 297 (479)
T ss_pred CceEEEecCcccchhhcc-cccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHH--HhCCccceeeechhcc
Confidence 999999999999998887 89999999999998 788999999999999999988887776 8999999999999887
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
+ +.+-+|+.|+++++|++...... .+.. +...+.|++|-.+ ..|++|+.+|.|.+|++.+.+.+-.
T Consensus 298 e-R~vtVGgrDrT~rlwKi~eesql-ifrg----------~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 298 E-RCVTVGGRDRTVRLWKIPEESQL-IFRG----------GEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred c-ceEEeccccceeEEEecccccee-eeeC----------CCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeE
Confidence 7 56677779999999999543322 2221 4457889999875 5899999999999999998875544
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
.....+..... ....++..|++++..|...++++++ +|.+++|-+..+
T Consensus 364 ~~~AHgv~~~~---~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 364 SRLAHGVIPEL---DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeccccccCCc---cccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 33322221110 1112236899999999999999999 779999999876
No 93
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8.4e-29 Score=228.67 Aligned_cols=252 Identities=16% Similarity=0.171 Sum_probs=185.6
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEecCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDD 82 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~~d 82 (471)
..+++++..+++++.+.....|+...|..+. .....+.. ......+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~---~~~~~G~~-----~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVL---KHTDYGKL-----ASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEe---eccccccC-----CCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 3456677778888889999999876443221 00000000 011234789999999999999 88999999999
Q ss_pred CeEEEEECCCCc-------eEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEE
Q 012064 83 RRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (471)
Q Consensus 83 ~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 154 (471)
++|++||+.++. .+..+ .+|...|.+++|+| ++ ++|++++.|++|++||+.+++.... +..|...|.
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P--~~~~iLaSgs~DgtVrIWDl~tg~~~~~--l~~h~~~V~ 172 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHP--SAMNVLASAGADMVVNVWDVERGKAVEV--IKCHSDQIT 172 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCc--CCCCEEEEEeCCCEEEEEECCCCeEEEE--EcCCCCceE
Confidence 999999997653 33444 78999999999999 65 6899999999999999988765543 778999999
Q ss_pred EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE---eCCCeEEEE
Q 012064 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA---GSDEYTRLY 231 (471)
Q Consensus 155 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~i~i~ 231 (471)
+++|+|++ .+|++++.|+.|++||+++++.+..+..+. ......+.|.++++.++.+| +.|+.|++|
T Consensus 173 sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 173 SLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred EEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence 99999999 588999999999999999988766654321 11234677888844444444 257999999
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCccc-CCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCC
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMG 292 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~ 292 (471)
|+++... +.... ......+....|++++++|++++ ++.|++||+..+
T Consensus 243 Dlr~~~~--------------p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 243 DTRKMAS--------------PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eCCCCCC--------------ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 9986541 11111 12234566678999999888765 678999999875
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.4e-31 Score=222.58 Aligned_cols=279 Identities=16% Similarity=0.250 Sum_probs=223.4
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.++-|-++...|++|+.|..|++|+...++. ....+|.|-.++|+.+.|.++++++++++.
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------ELISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchh-------------------hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence 3455777778999999999999999985441 234678888999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|+.+++|++...+...++ .+|++.|+++.|.. ....+++++.|.+|++||+....+.... + ....+.+|..++
T Consensus 240 d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~--~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l--~~S~cnDI~~~~- 312 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKL--SHSRVVSGSADRTIKLWDLQKAYCSKTV-L--PGSQCNDIVCSI- 312 (459)
T ss_pred CCceeeeeccchhhhhhh-cccccceeeehhhc--cccceeeccccchhhhhhhhhhheeccc-c--ccccccceEecc-
Confidence 999999999999887777 89999999999987 5566999999999999999887665532 2 234455666653
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
..+++|-.|+.|++||.++........ ..+.|+++..+++ +..+++++.|.++.+.|+++.+....
T Consensus 313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~-----------~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 313 --SDVISGHFDKKVRFWDIRSADKTRSVP-----------LGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred --eeeeecccccceEEEeccCCceeeEee-----------cCcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEE
Confidence 458999999999999999998887776 3347999999998 67888889999999999999875433
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCcc
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
+.- ...... ...+.+.|||++.|+++|+ ++.++||++.+++.
T Consensus 379 ~sA---------~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-------------------------- 421 (459)
T KOG0288|consen 379 FSA---------EGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-------------------------- 421 (459)
T ss_pred eec---------cccccc--cccceeEECCCCceeeeccCCCcEEEEEccCceE--------------------------
Confidence 211 122222 3378999999999999998 77999999988642
Q ss_pred CCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
...+........|+++.| +|.|.++++++.++.+.+|
T Consensus 422 ------------E~~l~~s~s~~aI~s~~W-~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 422 ------------EKVLSLSTSNAAITSLSW-NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ------------EEEeccCCCCcceEEEEE-cCCCchhhcccCCcceEec
Confidence 223332222224999999 9999999999999999998
No 95
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.8e-28 Score=227.25 Aligned_cols=251 Identities=12% Similarity=0.106 Sum_probs=184.9
Q ss_pred ecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCC-CeEEEEEeCCCeEEEEeccccCcc------eeeEeeceee
Q 012064 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGV------ETKLLGKHQG 151 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~ 151 (471)
|+.++.|++|+......+..+ .+|.+.|.+++|+| + +.+|++|+.||+|++||+.++... ....+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 667889999998877666666 79999999999999 6 789999999999999999764321 1224678999
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (471)
.|.+++|+|++..++++++.|+.|++||+++++....+. +...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------~~~~V~Slswspd-G~lLat~s~D~~IrIw 194 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------MPKKLSSLKWNIK-GNLLSGTCVGKHMHII 194 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------cCCcEEEEEECCC-CCEEEEEecCCEEEEE
Confidence 999999999987677899999999999999987655443 2346899999999 6899999999999999
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCcccCCCccce-----EEEEEcCCCCeEEEee-CC----cEEEEecCCCCCCCCCCCC
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-----TGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSS 301 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~-~~----~i~i~d~~~~~~~~~~~~~ 301 (471)
|+++++... ....|.+.+ ....|++++.+|++++ ++ .|++||++...
T Consensus 195 D~Rsg~~i~---------------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-------- 251 (568)
T PTZ00420 195 DPRKQEIAS---------------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-------- 251 (568)
T ss_pred ECCCCcEEE---------------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC--------
Confidence 999876322 123344332 3334668888888766 43 59999998531
Q ss_pred CccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe
Q 012064 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (471)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~ 381 (471)
.++.....+.....+..... .++|.++++|+.|+.|++|++..+. +..+
T Consensus 252 -----------------------------~pl~~~~ld~~~~~L~p~~D-~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l 300 (568)
T PTZ00420 252 -----------------------------SALVTMSIDNASAPLIPHYD-ESTGLIYLIGKGDGNCRYYQHSLGS-IRKV 300 (568)
T ss_pred -----------------------------CceEEEEecCCccceEEeee-CCCCCEEEEEECCCeEEEEEccCCc-EEee
Confidence 12222222222111333322 5668899999999999999997764 2333
Q ss_pred cC--CCcceEEEEEcCCCC
Q 012064 382 EA--DRHVVNCIEPHPHST 398 (471)
Q Consensus 382 ~~--h~~~v~~~~~s~~~~ 398 (471)
.. +..++.+++|.|+..
T Consensus 301 ~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cccccCCCccceEEccccc
Confidence 22 456788999999753
No 96
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.8e-28 Score=214.25 Aligned_cols=249 Identities=13% Similarity=0.180 Sum_probs=199.6
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc-cccEEEEEEcCCCCEEEEe
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~~g~~l~s~ 79 (471)
|.+++|+.+.+.||.+-.||.|.||++..+-+.. ..+.++ .+.|-+++|++ +..|.+.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--------------------~vi~g~~drsIE~L~W~e-~~RLFS~ 86 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--------------------PVIHGPEDRSIESLAWAE-GGRLFSS 86 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceee--------------------EEEecCCCCceeeEEEcc-CCeEEee
Confidence 3567899999999999999999999999655442 556665 47899999995 5567888
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+.+|.|.-||+.+++.+..+ ....+.|++++.+| .+..++.|++||.+..++...++......+...++.+.+++|+
T Consensus 87 g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred cCCceEEEEecccCceeEEe-cCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 89999999999999998887 67788999999999 8999999999998888887766666666677777999999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
|++ ..++.|+.||.|++||...+.........-....++ ...-|.++.|-.+ ..+++|..-|+|.+||...+.+.
T Consensus 164 ~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~--~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 164 PTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR--EPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred CCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccC--CceEEEEEEEeec--CcEEEecCCceEEEEcccCcchh
Confidence 999 568999999999999999988766332211111111 3345788888865 48999999999999999988765
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
+. ...|++.|.+++..+++.++++++ |+++..|...++.
T Consensus 239 qS---------------~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 239 QS---------------HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred hh---------------hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 43 334688899999999988877776 7788888776654
No 97
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=219.90 Aligned_cols=252 Identities=30% Similarity=0.546 Sum_probs=190.4
Q ss_pred ccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE
Q 012064 43 ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV 122 (471)
Q Consensus 43 ~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 122 (471)
+....+.++.+.+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||....+++..+..+|...|.+++|.|..+++.++
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence 55556778888999999999999999999999999999999999999998889999999999999999999988889999
Q ss_pred EEeCCCeEEEEeccccC--------cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeee-ecc
Q 012064 123 TCAADGQVRHAQILERG--------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT-CRP 193 (471)
Q Consensus 123 s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 193 (471)
+|+.|..|+++|+...+ ......+..|...|..++..|++++.+.++++||+|+-+|++....-..-. +..
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999999997522 223344678999999999999999999999999999999998743221110 100
Q ss_pred cCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC----CCCCCCC-----CCcCCCCcccCC-----
Q 012064 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG----STDFGQP-----ADYFCPPNLIGD----- 259 (471)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~----- 259 (471)
.. ..-+..-....++..+|....+|++|+.|...++||.+...... .....+| +..++|..+...
T Consensus 192 ~l-~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 192 IL-VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HH-HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 00 00001223578999999999999999999999999965432111 1112223 344454444111
Q ss_pred -CccceEEEEEcCCCCe-EEEeeCCcEEEEecCCCCCC
Q 012064 260 -EQVGITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 260 -~~~~i~~~~~~~~~~~-l~~~~~~~i~i~d~~~~~~~ 295 (471)
....++.++|+|+|.- |++-+.+.|+++|+..++.+
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 1123577889999964 55666778999999876543
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.4e-29 Score=237.04 Aligned_cols=296 Identities=16% Similarity=0.196 Sum_probs=221.1
Q ss_pred CCCCCCCCcEEEEec--CCCeEEEEEcccCccccccccceecccccceee-eeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 3 DASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVLR-LGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
++..+|++..+|+|+ .||.++||+.+.= ....++.... -+.+.+...|.+.|+|+.|+|||++||+|
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~v----------l~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPV----------LDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccc----------cchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 356789999999999 9999999997720 1011111111 23456677899999999999999999999
Q ss_pred cCCCeEEEEECCC----------C--------ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc
Q 012064 80 SDDRRVILWDWKT----------E--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (471)
Q Consensus 80 ~~d~~i~iwd~~~----------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 141 (471)
+.|+.|.||.... | +.. ..+.+|...|.+++|+| ++.+|++++.|++|.+|+..+.+..
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCC--CccEEEEecccceEEEEccccceee
Confidence 9999999999872 0 122 33478999999999999 9999999999999999999998655
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
.. +.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-.....+..+... ......+..+.|+|| |++|++
T Consensus 165 ~v--l~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~----~~~~T~f~RlSWSPD-G~~las 236 (942)
T KOG0973|consen 165 KV--LRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEE----SPLTTFFLRLSWSPD-GHHLAS 236 (942)
T ss_pred ee--eecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhh----CCCcceeeecccCCC-cCeecc
Confidence 44 99999999999999999 57899999999999997765555444322110 013345789999999 788887
Q ss_pred Ee----CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC-----CC------------eEEEee
Q 012064 222 AG----SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-----SE------------LLVSYN 280 (471)
Q Consensus 222 ~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~ 280 (471)
.. .-..+.|.+..+.+. ...+-+|..++.++.|+|. .+ .+|+|+
T Consensus 237 ~nA~n~~~~~~~IieR~tWk~---------------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGTWKV---------------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred hhhccCCcceeEEEecCCcee---------------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 54 223577777655442 2234567889999999982 11 456677
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 281 -~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
|+.+.+|.....++... +..+..+ .|..++| +|||..|+
T Consensus 302 qDrSlSVW~T~~~RPl~v-----------------------------------i~~lf~~----SI~DmsW-spdG~~Lf 341 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFV-----------------------------------IHNLFNK----SIVDMSW-SPDGFSLF 341 (942)
T ss_pred CCccEEEEecCCCCchhh-----------------------------------hhhhhcC----ceeeeeE-cCCCCeEE
Confidence 66899999754322111 1112222 3999999 99999999
Q ss_pred EeeCCCeEEEEEccC
Q 012064 360 SGSDCGRIFIWKKKG 374 (471)
Q Consensus 360 ~g~~dg~v~iwd~~~ 374 (471)
+++.||+|.++..+.
T Consensus 342 acS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 342 ACSLDGTVALIHFEE 356 (942)
T ss_pred EEecCCeEEEEEcch
Confidence 999999999998864
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.8e-29 Score=200.58 Aligned_cols=265 Identities=14% Similarity=0.187 Sum_probs=210.0
Q ss_pred EEEecCCCeEEEEECCCCc------------eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 76 LISGSDDRRVILWDWKTER------------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
++.|++...|.-+++.-.. ++..+ ..|.+.|++++. ++.++++|+.|.+|+|||+........
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcc
Confidence 5667777666666553221 12233 689999999998 679999999999999999988777665
Q ss_pred eEeeceeeeEEEEEEccCCC-cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 144 KLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
+..|.+.|+++.|.+... ..|++|+.||.|.+|+...-..+..++. |...|+.++.+|. +.+.++.
T Consensus 79 --ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~----------H~~~Vt~lsiHPS-~KLALsV 145 (362)
T KOG0294|consen 79 --LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA----------HKGQVTDLSIHPS-GKLALSV 145 (362)
T ss_pred --eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc----------cccccceeEecCC-CceEEEE
Confidence 778999999999987652 2589999999999999998887777765 5567999999999 6888889
Q ss_pred eCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCC
Q 012064 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~ 302 (471)
+.|+.++.|++-+++...... -....+.+.|+|.|.+++....+.|-+|.+++......
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~----------------L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~----- 204 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLN----------------LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE----- 204 (362)
T ss_pred cCCceeeeehhhcCccceeec----------------cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh-----
Confidence 999999999998876322111 12223459999999999999999999999876422111
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
.... ..+.++.| -++.+|++|++|+.|.+||..+..+...+.
T Consensus 205 ---------------------------------i~~~---~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 205 ---------------------------------IENP---KRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred ---------------------------------hhcc---ccceeeee--cCCceEEEecCCceEEEeccCCCccceeee
Confidence 1111 12566666 467799999999999999999999999999
Q ss_pred CCCcceEEEEE--cCCCCEEEEeecCCcEEEecCCCC
Q 012064 383 ADRHVVNCIEP--HPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 383 ~h~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
+|..+|.++.+ .|++.+|+|+|.||.|++||++..
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999985 477889999999999999999865
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=222.58 Aligned_cols=331 Identities=14% Similarity=0.155 Sum_probs=249.4
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC-----------C
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-----------G 73 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~-----------g 73 (471)
.|.+....|..-..|..++|||+..-..+. ....+--|...|+.+.--|. .
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~kvg------------------k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNKVG------------------KCSSMLYHSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEecccccccc------------------ceeeeeeccceeeeeccccccccCcccccCCc
Confidence 477888889999999999999998655442 22344458888888776551 1
Q ss_pred CEEEEecCCCeEEEEECCCCc---eEEE-ee--------------------------------cCCCcceeEEEEecCCC
Q 012064 74 DILISGSDDRRVILWDWKTER---VKLS-FH--------------------------------SGHNDNVFQAKIMPFTD 117 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~---~~~~-~~--------------------------------~~~~~~v~~~~~~~~~~ 117 (471)
..+.|++.|++|++||+..+. ..++ ++ -+..-.+.+++.+| +
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp--~ 470 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP--D 470 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC--C
Confidence 358899999999999997521 1000 00 01234689999999 9
Q ss_pred CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC--CCcEEEEEecCCeEEEEeccCCc-cceeeeeccc
Q 012064 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPI 194 (471)
Q Consensus 118 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 194 (471)
+++|++|..-|++++|++.+.+.... ...|+..|.|+.|+.. +.++|++++.|..|.+||....- .++.+..
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~--~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~--- 545 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCF--MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG--- 545 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhh--eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---
Confidence 99999999999999999988776655 7889999999999842 34689999999999999986553 3333322
Q ss_pred CCcCcceeeeeeEEEEEcCCCC-ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (471)
|...|+++.|.-.+. ..+++++.|..|.+--.+... .. .. -+.....-....+..++..|..
T Consensus 546 -------HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~-~g--------~~-f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 546 -------HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS-SG--------RL-FPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred -------cccceeEEEEeecCCceEEEeccCchhhheehhcccc-Cc--------ee-ccccccccccceEEEeeeCCCc
Confidence 667899999987642 567888888776543322111 00 00 1111222235678999999999
Q ss_pred CeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce-eEeeeeeee
Q 012064 274 ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFF 351 (471)
Q Consensus 274 ~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 351 (471)
++++++. |..|+||++.+++.. +.|++..+. .....+..
T Consensus 609 k~v~t~cQDrnirif~i~sgKq~--------------------------------------k~FKgs~~~eG~lIKv~l- 649 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESGKQV--------------------------------------KSFKGSRDHEGDLIKVIL- 649 (1080)
T ss_pred ceEEEEecccceEEEecccccee--------------------------------------eeecccccCCCceEEEEE-
Confidence 9999988 558999999986543 444442221 23666776
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+|.|.|||+...|.++.++|..+|+++.++.+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999999999999999999999999999999999873
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=198.03 Aligned_cols=251 Identities=19% Similarity=0.200 Sum_probs=196.9
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC--CCCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--~g~~l~s~ 79 (471)
.++.-.-.|++||++++|++|||+....+... .+..+|.||+++|+.++|.. .|.+||++
T Consensus 15 Hda~lDyygkrlATcsSD~tVkIf~v~~n~~s------------------~ll~~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 15 HDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS------------------KLLAELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hHhhhhhhcceeeeecCCccEEEEEEcCCCCc------------------eeeeEecCCCCCeeEEeecccccCcEeeEe
Confidence 45555667999999999999999999865432 35579999999999999965 78999999
Q ss_pred cCCCeEEEEECCCCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc-CcceeeEeeceeeeEEEE
Q 012064 80 SDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~ 156 (471)
++||.|.||.-++|+- .... ..|...|++++|.|..-|-.|++++.||.|.+.+.+.. .....+....|.-.|+++
T Consensus 77 sYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 9999999999887753 2222 67999999999999766888999999999999999876 444455577899999999
Q ss_pred EEccC---C----------CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC---CceEE
Q 012064 157 AIEPG---S----------PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---ANLFA 220 (471)
Q Consensus 157 ~~~~~---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~ 220 (471)
+|.|. | .+.|++|+.|..|+||+..+++-...-.. .+ |...|+.++|.|.. ...++
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l------~~--H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL------EG--HKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh------hh--cchhhhhhhhccccCCCceeeE
Confidence 99986 2 13589999999999999988743322211 12 66789999999973 35799
Q ss_pred EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
+++.||++.||..+...... ...++......+..+.|+..|.+|+.+. ++.+.+|.-..
T Consensus 228 S~SqDg~viIwt~~~e~e~w------------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPW------------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCCCcEEEEEecCccCcc------------cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999999999887332111 1223333467799999999999998776 66899997543
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.4e-27 Score=184.45 Aligned_cols=305 Identities=16% Similarity=0.221 Sum_probs=225.4
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccce-eeeeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLV-LRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
|..++|+|.|.+.|+|+..++.||-....-..+ ..+.+... ...-+.++-+.|.+.|.|.+|||+|+++|+|
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~-------r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL-------RHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCc-------ccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 356889999999999999999999865421111 01111111 1122335556799999999999999999999
Q ss_pred cCCCeEEEEECCCCce-----EEEeecCCCcceeEEEEec--CCCCeEEEEEe-CCCeEEEEeccccCcceeeEeeceee
Q 012064 80 SDDRRVILWDWKTERV-----KLSFHSGHNDNVFQAKIMP--FTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
+.|.+|++..+....+ -.++ .-|.+.|..++|.. ...+..|++++ .|..|++-|...+..... +.+|++
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a--~sghtg 184 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA--LSGHTG 184 (350)
T ss_pred CCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee--ecCCcc
Confidence 9999999976544322 1334 56999999999975 12355677654 366777777777766655 899999
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (471)
.|.++- +-++ -++++|+.|.+|++||++-..++..+..... .+-.....|.+++..|. +.+|++|..|....+|
T Consensus 185 hilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---~~glessavaav~vdps-grll~sg~~dssc~ly 258 (350)
T KOG0641|consen 185 HILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---DGGLESSAVAAVAVDPS-GRLLASGHADSSCMLY 258 (350)
T ss_pred cEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCccc---CCCcccceeEEEEECCC-cceeeeccCCCceEEE
Confidence 998763 3344 5799999999999999998887766543211 11123467899999999 7999999999999999
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
|++.++.+ ..+..|...|.++.|+|...|+.+++ +..|++-|+......
T Consensus 259 dirg~r~i---------------q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~--------------- 308 (350)
T KOG0641|consen 259 DIRGGRMI---------------QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH--------------- 308 (350)
T ss_pred EeeCCcee---------------eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh---------------
Confidence 99988643 33456788999999999999999999 558999998764211
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
..++.....|+.. +..+.| +|..-.+++.+.|.++.+|-+.
T Consensus 309 -------------------el~~~vv~ehkdk--~i~~rw-h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 -------------------ELPIMVVAEHKDK--AIQCRW-HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -------------------cCceEEEEeccCc--eEEEEe-cCccceeeeccCcceEEEeccC
Confidence 2234555667776 777888 8888888899999999999763
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=217.51 Aligned_cols=288 Identities=16% Similarity=0.204 Sum_probs=210.3
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecc-ccccEEEEEEcCCCCEEEEecC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+.+.|.|.++++|+-|-+|++||....... ++..+.|+. ....|.+++|++.|..|++.+.
T Consensus 172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------------~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-----------------MRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred EeeecCCCceeeeccccceEEEEeccccccc-----------------chhhhccCcccccccceeeecCCCCeEEEEec
Confidence 3567899999999999999999999833222 112234432 3467999999999998888888
Q ss_pred CCeEEEEECCCCceEEEe------------ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceee----E
Q 012064 82 DRRVILWDWKTERVKLSF------------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK----L 145 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~ 145 (471)
....+|+|-. |..+..+ .++|...++|.+|+|. +.+.+++++.||++|+||+...+..... .
T Consensus 235 ~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 235 SAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred CcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 8899999965 4443333 2679999999999994 5567899999999999999776543221 1
Q ss_pred eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
..+..-+++.++|++++ .+|++|..||.|.+|+.........+.... .|.....|+|++|+++ +++|++-+.|
T Consensus 313 ~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~-----AH~~g~~Itsi~FS~d-g~~LlSRg~D 385 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKD-----AHLPGQDITSISFSYD-GNYLLSRGFD 385 (641)
T ss_pred CCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeee-----ccCCCCceeEEEeccc-cchhhhccCC
Confidence 12233468899999999 579999999999999986554333333222 2224458999999999 7999999999
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCC--CccceEEEEEcCCCCeEEEeeC-------CcEEEEecCCCCCCC
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD--EQVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPN 296 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-------~~i~i~d~~~~~~~~ 296 (471)
+++++||++..+.. .....+ ...+-+.++|+|+.++|++|.. +.+++||..+-
T Consensus 386 ~tLKvWDLrq~kkp--------------L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---- 447 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKP--------------LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---- 447 (641)
T ss_pred Cceeeeeccccccc--------------hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce----
Confidence 99999999986521 111111 1234578899999999998862 35888987663
Q ss_pred CCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
..+..+.-... .|..+.| +|.-+.|+.|+.||.+++|-
T Consensus 448 ----------------------------------d~v~ki~i~~a--Svv~~~W-hpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 448 ----------------------------------DTVYKIDISTA--SVVRCLW-HPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ----------------------------------eeEEEecCCCc--eEEEEee-cchhhheeeecCCCceEEEE
Confidence 22222222222 3778888 99999999999999999874
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.9e-29 Score=209.84 Aligned_cols=299 Identities=18% Similarity=0.224 Sum_probs=229.8
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe----------------e-cCCCcceeEEEEecCC
Q 012064 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF----------------H-SGHNDNVFQAKIMPFT 116 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~----------------~-~~~~~~v~~~~~~~~~ 116 (471)
.+.+..|.-+|.+++++|++++.++++.+++|.=|++.++.....+ . .+|...+.+++.+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-- 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-- 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence 4677889999999999999999999999999999999887743111 1 26888999999999
Q ss_pred CCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC
Q 012064 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
|++||++|+.|..|.||+.++.+.+.. +.+|.+.|.+++|-... ..+++++.|+.+++|+++....+.++..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyG----- 284 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYG----- 284 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhC-----
Confidence 999999999999999999999988876 89999999999998765 5689999999999999998887777654
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeE
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (471)
|...|.++..... +..+-+|+.|+++++|++.... +.++.++.+.+.|++|-.+..++
T Consensus 285 -----Hqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~ees----------------qlifrg~~~sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 285 -----HQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEES----------------QLIFRGGEGSIDCVAFINDEHFV 342 (479)
T ss_pred -----Cccceeeechhcc-cceEEeccccceeEEEeccccc----------------eeeeeCCCCCeeeEEEeccccee
Confidence 5567888877765 5667677799999999995432 33455667789999998776554
Q ss_pred EEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc
Q 012064 277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (471)
Q Consensus 277 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~ 356 (471)
..+.+|.|.+|++...+++........ ....+..-..+.+|++++. .|...
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHg----------------------------v~~~~~~~~~~~Witsla~-i~~sd 393 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHG----------------------------VIPELDPVNGNFWITSLAV-IPGSD 393 (479)
T ss_pred eccCCceEEEeeecccCceeEeecccc----------------------------ccCCccccccccceeeeEe-cccCc
Confidence 444477999999987654433220000 0000011111134899998 89999
Q ss_pred EEEEeeCCCeEEEEEccCC----eeeEEecCCCcceEEEEEcCCCCEEE-EeecCCcEEEecC
Q 012064 357 YVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVLA-SSGIESDIKILTP 414 (471)
Q Consensus 357 ~l~~g~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~ 414 (471)
++|+|+.+|.|++|-+..+ +++..+. -.+.|++++|+++|+.++ ..+....+--|-.
T Consensus 394 L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 394 LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 9999999999999999887 3444444 567899999999999554 4455555555544
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-27 Score=194.40 Aligned_cols=281 Identities=16% Similarity=0.223 Sum_probs=215.9
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
++++.|+++|.++++++.|-+++|||..+|++. +++..+.-.|..++|......++.++
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---------------------~ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---------------------KTINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---------------------eEeecccccccEEEEecCCceEEEcc
Confidence 467889999999999999999999999988887 67777888899999977666666666
Q ss_pred C--CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 81 D--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 81 ~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
. |.+|+.-++.+.+.++.+ .||...|..++.+| -++.+++++.|++|++||++..++.....+ ..-..++|
T Consensus 76 tk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----~~~pi~Af 148 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----SGRPIAAF 148 (311)
T ss_pred CCCCCceEEEEeecCceEEEc-CCCCceEEEEEecC--CCCeEEecccCCeEEeeEecCCCCceEEec----CCCcceeE
Confidence 6 889999999999998887 89999999999999 889999999999999999997777654222 22345789
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCC--ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
.|+| -+++++.....|++||++.- .+...+..... ...+.+.+.|+|+ |++++.++..+.+++.|.-.+
T Consensus 149 Dp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~-------~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 149 DPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDN-------DEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred CCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCC-------CccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCC
Confidence 9999 57777777679999999875 23334433221 3456899999999 688888899999999999888
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (471)
......... .....--...+|+||++++.+++ +|+|.+|+++++.
T Consensus 220 ~~~~tfs~~------------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~---------------------- 265 (311)
T KOG1446|consen 220 TVKSTFSGY------------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK---------------------- 265 (311)
T ss_pred cEeeeEeec------------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc----------------------
Confidence 754432211 11111226788999999999998 5799999998853
Q ss_pred CCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 316 HTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
.+..+.+ +... +.++.| +|.-..++++ +..+.+|=..
T Consensus 266 ----------------~v~~~~~~~~~~--~~~~~f-nP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 266 ----------------KVAVLRGPNGGP--VSCVRF-NPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ----------------EeeEecCCCCCC--cccccc-CCceeeeeec--CceEEEEecc
Confidence 3444454 3333 778888 8886666655 4577777554
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=198.13 Aligned_cols=276 Identities=17% Similarity=0.201 Sum_probs=205.3
Q ss_pred CCCCCCC-CCcEEEEecCCCeEEEEEccc-CccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 2 DDASNNN-NNKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
.+++||| ...++++|+-||+||+|+++. |.... +....|.++|.+++|+.||..+++|
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------ka~~~~~~PvL~v~WsddgskVf~g 90 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------KAQQSHDGPVLDVCWSDDGSKVFSG 90 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccc--------------------hhhhccCCCeEEEEEccCCceEEee
Confidence 4578999 567788999999999999996 44442 4556799999999999999999999
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+.|+.+++||+.+++. ..+ ..|.++|..+.|-+...-..|++|+.|++|+.||++...++....++ +.++++..-
T Consensus 91 ~~Dk~~k~wDL~S~Q~-~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---eRvYa~Dv~ 165 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQV-SQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---ERVYAADVL 165 (347)
T ss_pred ccCCceEEEEccCCCe-eee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---ceeeehhcc
Confidence 9999999999999975 455 68999999999998333448999999999999999988877664443 567776664
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
. .+++++..++.|.+|+++++.........+ ..-.++|++..++ ....+.|+-+|.+.+..+......
T Consensus 166 ~---pm~vVata~r~i~vynL~n~~te~k~~~Sp--------Lk~Q~R~va~f~d-~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 166 Y---PMAVVATAERHIAVYNLENPPTEFKRIESP--------LKWQTRCVACFQD-KDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred C---ceeEEEecCCcEEEEEcCCCcchhhhhcCc--------ccceeeEEEEEec-CCceEeeeecceEEEEecCCCCcc
Confidence 3 367889999999999998764332211111 2235789998888 456689999999999998875322
Q ss_pred CCCCCCCCCCcCCCCcc--cCCCccceEEEEEcCCCCeEEEe-eCCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 240 GSTDFGQPADYFCPPNL--IGDEQVGITGLAFSDQSELLVSY-NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
..+.+ .|.+.. ....--.|++++|+|.-..|++. +||+...||.+.
T Consensus 234 ~nFtF------kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda------------------------- 282 (347)
T KOG0647|consen 234 DNFTF------KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA------------------------- 282 (347)
T ss_pred CceeE------EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh-------------------------
Confidence 22111 111111 11113468899999976666665 588999999876
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g 361 (471)
+..+...+.|..+ |++..| +.+|.++|.+
T Consensus 283 -------------r~kLk~s~~~~qp--Itcc~f-n~~G~ifaYA 311 (347)
T KOG0647|consen 283 -------------RTKLKTSETHPQP--ITCCSF-NRNGSIFAYA 311 (347)
T ss_pred -------------hhhhhccCcCCCc--cceeEe-cCCCCEEEEE
Confidence 3344455556655 899998 9999988865
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=223.24 Aligned_cols=241 Identities=18% Similarity=0.202 Sum_probs=197.6
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEE
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~ 86 (471)
.|++++|.+|++||+|++|+...-.--. .-+...+++.|.+.|+.++...+|+.|+++|.|-+|+
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEP---------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCc---------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3567789999999999999977321100 0012367889999999999999999999999999999
Q ss_pred EEECCCCc--eEEEeecCCCcceeEEEE-ecCCCCeEEEEEeCCCeEEEEeccccCc--------ceeeEee-ceeeeEE
Q 012064 87 LWDWKTER--VKLSFHSGHNDNVFQAKI-MPFTDDRSIVTCAADGQVRHAQILERGG--------VETKLLG-KHQGRAH 154 (471)
Q Consensus 87 iwd~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~-~~~~~v~ 154 (471)
+|+...+. ++..+ ..|+.-|.|+++ .+ +...+++|+-|+.|.+||+.++.. +....+. ++...|+
T Consensus 99 ~W~~~~~~~~c~sti-r~H~DYVkcla~~ak--~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTI-RTHKDYVKCLAYIAK--NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred EeecccCcchhHhhh-hcccchheeeeeccc--CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 99998773 44444 789999999999 66 889999999999999999986622 1112233 7889999
Q ss_pred EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 155 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
+++.++.+ .++++|+.++.|++||.++.+.+..+.. |...|.++..++| |..+++++.||+|++||+.
T Consensus 176 SLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrG----------HTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 176 SLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRG----------HTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred eeecCCcc-eEEEecCcccceEEeccccccceeeeec----------cccceEEEEEcCC-CCeEeecCCCceEEeeecc
Confidence 99999999 7899999999999999999988777664 6778999999999 7899999999999999999
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
..+. ... ..-|...++++..+|+=..+.+|+ ++.|+.=|+++.
T Consensus 244 qQrC--------------l~T-~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 244 QQRC--------------LAT-YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccce--------------eee-EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 8763 333 334566699999999988999888 668998888763
No 108
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=206.30 Aligned_cols=265 Identities=15% Similarity=0.227 Sum_probs=210.2
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe-------ecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
+....+-|..|||||+||++|+.||.|.+||..+|+....+ +.-+..+|.|+.|+. |...+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence 45667889999999999999999999999999998864433 134778999999999 999999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+|.+.++.++.+ .-..|...|+++.|+.|+. .+++++.|.++++--+++|++.+.+.. |...|+...|
T Consensus 289 vWri~tG~ClRr-FdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrG----------HsSyvn~a~f 356 (508)
T KOG0275|consen 289 VWRIETGQCLRR-FDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRG----------HSSYVNEATF 356 (508)
T ss_pred EEEEecchHHHH-hhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcC----------ccccccceEE
Confidence 999999998875 2347999999999999995 679999999999999999999988875 6678999999
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
.++ |+.+++++.||+|++|+.++.+.... |-|-+
T Consensus 357 t~d-G~~iisaSsDgtvkvW~~KtteC~~T---------------------------fk~~~------------------ 390 (508)
T KOG0275|consen 357 TDD-GHHIISASSDGTVKVWHGKTTECLST---------------------------FKPLG------------------ 390 (508)
T ss_pred cCC-CCeEEEecCCccEEEecCcchhhhhh---------------------------ccCCC------------------
Confidence 999 78999999999999999988763322 11111
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
...+|+++..+..+-..++.+...++|+|.+
T Consensus 391 -------------------------------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 391 -------------------------------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred -------------------------------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 0001233322233445677777888999999
Q ss_pred ccCCeeeEEecCC---CcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc-ccCcchheeehhh
Q 012064 372 KKGGELIRVIEAD---RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQAMMMT 433 (471)
Q Consensus 372 ~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~ 433 (471)
+ .|+.++.+... .+...+...||.|.+++..++|+.++.+++.++... +++-|...++..+
T Consensus 422 ~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 422 M-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLT 486 (508)
T ss_pred c-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccc
Confidence 8 57777777432 345677888999999999999999999999998884 4555555555443
No 109
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=8.9e-28 Score=222.72 Aligned_cols=212 Identities=14% Similarity=0.153 Sum_probs=155.3
Q ss_pred eEEeccccccEEEEEEcCC-CCEEEEecCCCeEEEEECCCCc--------eEEEeecCCCcceeEEEEecCCCCeE-EEE
Q 012064 54 YAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTER--------VKLSFHSGHNDNVFQAKIMPFTDDRS-IVT 123 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s 123 (471)
...+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. ++.. +.+|...|.+++|+| ++.. +++
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~-L~gH~~~V~sVaf~P--~g~~iLaS 143 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGHKKKISIIDWNP--MNYYIMCS 143 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE-eecCCCcEEEEEECC--CCCeEEEE
Confidence 4678999999999999997 7899999999999999997643 1223 378999999999999 8765 568
Q ss_pred EeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceee
Q 012064 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (471)
++.|++|++||+.+++.... +. |...|.+++|+|+| .+|++++.|+.|++||+++++.+..+..+... ...
T Consensus 144 gS~DgtIrIWDl~tg~~~~~--i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~-----~~s 214 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQ--IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG-----KNT 214 (568)
T ss_pred EeCCCeEEEEECCCCcEEEE--Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccCC-----cee
Confidence 89999999999988765443 33 56789999999999 57888999999999999999887666542210 011
Q ss_pred eeeEEEEEcCCCCceEEEEeCC----CeEEEEEcCCCccCCCCCCCCCCCcCCCCcc--cCCCccceEEEEEcCCCCeEE
Q 012064 204 VNLNAIAIDPRNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL--IGDEQVGITGLAFSDQSELLV 277 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~ 277 (471)
..+....|+++ +.++++++.+ +.|++||++.... +... ...+.+.+......++|.+++
T Consensus 215 ~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~--------------pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 215 KNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTS--------------ALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCC--------------ceEEEEecCCccceEEeeeCCCCCEEE
Confidence 22333456687 5677776655 3799999986321 1111 111223333333455688888
Q ss_pred Eee-CCcEEEEecCCC
Q 012064 278 SYN-DEFIYLFTQDMG 292 (471)
Q Consensus 278 ~~~-~~~i~i~d~~~~ 292 (471)
+|. |+.|++|++..+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 776 678999999754
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.4e-28 Score=195.61 Aligned_cols=305 Identities=15% Similarity=0.215 Sum_probs=213.9
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce-----EEEeecCCCcceeEEEEecCCCCeEEE-EEeCCC
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV-----KLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADG 128 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg 128 (471)
..|++|.+.|++++|+.||++|||++.|+.|++|++..... ++.- -.-+.-+.+.|.| |-+-++ ++-...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~Fap--Dc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAP--DCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECC--CcceEEEEEccCC
Confidence 57899999999999999999999999999999999876432 1111 1122457789999 876655 445556
Q ss_pred eEEEEeccccCc---cee-------eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcC
Q 012064 129 QVRHAQILERGG---VET-------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198 (471)
Q Consensus 129 ~i~iwd~~~~~~---~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (471)
++++|.+...+. ... ..-..|.-.+..+-...++ .++++++.|..|.+|+++ |+.+..+...
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtn------ 227 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTN------ 227 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccc------
Confidence 899998753321 110 0112355566666666666 689999999999999999 7777666542
Q ss_pred cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE
Q 012064 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (471)
...-+..+.+|+ |+++++++--..+++|.+--.+.- .++.......+.+|+..|..++|+|+.+.+++
T Consensus 228 ----q~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG-------~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 228 ----QSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDG-------TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred ----cccccceeeCCC-CcEEEEecCCCCceEEEEEeccCc-------chhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 223467789999 789999888888999987543311 11111223456789999999999999999999
Q ss_pred ee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcE
Q 012064 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (471)
Q Consensus 279 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~ 357 (471)
.+ ||++++||.+-......-+ +.+ ..-...+..... ....+.. +|+|+.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDp-----------------k~L----------k~g~~pl~aag~--~p~RL~l-sP~g~~ 345 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDP-----------------KIL----------KEGSAPLHAAGS--EPVRLEL-SPSGDS 345 (420)
T ss_pred EecCCcEEEeeccceEecCCCc-----------------hHh----------hcCCcchhhcCC--CceEEEe-CCCCcE
Confidence 98 8899999987543222110 000 000011111111 1336777 999999
Q ss_pred EEEeeCCCeEEEEEccCCeeeEEe-cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 358 VVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 358 l~~g~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
||... ...+++|..++|+....+ +.|...|.+++|+++|++++|++ |..+++..-.
T Consensus 346 lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 346 LAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred EEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 88765 457999999998877665 45899999999999999999997 6788887633
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-26 Score=178.36 Aligned_cols=301 Identities=17% Similarity=0.224 Sum_probs=226.7
Q ss_pred eeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCC------Cc--------eEEEeecCCCcceeEEEEecC
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT------ER--------VKLSFHSGHNDNVFQAKIMPF 115 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~------~~--------~~~~~~~~~~~~v~~~~~~~~ 115 (471)
.+..+..+. .+..|.+++|+|.|.+.|.|+...+++|..... +. .+..-.+.|++.|+|.+|+|
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~- 99 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP- 99 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-
Confidence 344555554 567899999999999999999999999875421 11 12222357999999999999
Q ss_pred CCCeEEEEEeCCCeEEEEeccccCcce---eeEeeceeeeEEEEEEccC---CCcEEEEEe-cCCeEEEEeccCCcccee
Q 012064 116 TDDRSIVTCAADGQVRHAQILERGGVE---TKLLGKHQGRAHKLAIEPG---SPHVFYTCG-EDGLVQHFDLRTGAATEL 188 (471)
Q Consensus 116 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 188 (471)
+|+++++|+.|.+|++..+....+.. ...+.-|.+.|..++|..+ +..++++++ .|..|++-|...++....
T Consensus 100 -~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 -CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred -ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999998765433321 2347789999999999643 334666554 466788888888887766
Q ss_pred eeecccCCcCcceeeeeeEEE-EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEE
Q 012064 189 FTCRPIDDRRNYMTVVNLNAI-AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (471)
+.. |.+.|.++ .|+ +.++++|+.|.+|++||++-.......... .+--.-..+.|.++
T Consensus 179 ~sg----------htghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------~~~~glessavaav 237 (350)
T KOG0641|consen 179 LSG----------HTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND--------FHDGGLESSAVAAV 237 (350)
T ss_pred ecC----------CcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--------ccCCCcccceeEEE
Confidence 654 44445554 343 679999999999999999976533221110 00111134679999
Q ss_pred EEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEee
Q 012064 268 AFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (471)
Q Consensus 268 ~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (471)
+..|.|++|+++..+ ...+||++.+ ..++.+..|... |.
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~--------------------------------------r~iq~f~phsad--ir 277 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGG--------------------------------------RMIQRFHPHSAD--IR 277 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCC--------------------------------------ceeeeeCCCccc--ee
Confidence 999999999999854 7999999885 456777778776 99
Q ss_pred eeeeeCCCCcEEEEeeCCCeEEEEEccCC----eeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 347 ~~~~~s~~g~~l~~g~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
++.| +|...|+.+++.|..|++-|++.. -.+-..-.|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 278 ~vrf-sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 278 CVRF-SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEe-CCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999 999999999999999999998532 1123345688999999999999999999999999999865
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=6.4e-28 Score=214.92 Aligned_cols=285 Identities=19% Similarity=0.244 Sum_probs=234.8
Q ss_pred eeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEE-EeecCCCcceeE-EEEecCCCCeEEEEEeCCC
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQ-AKIMPFTDDRSIVTCAADG 128 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg 128 (471)
+++.+.+.||...|..+++.+. ..++++|.||++++|+-..++.+. ....+|.+.|.. ++|.+ .++..+++|+.|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccc
Confidence 4566899999999999987654 478999999999999976655544 334678888777 88887 4677799999999
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.|.+|...+..+... +.+|...|.+++...++ . +++|+.|.++++|-.. ++...+.. |...|.+
T Consensus 82 ~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~--~l~~~l~g----------H~asVWA 145 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIG--ELVYSLQG----------HTASVWA 145 (745)
T ss_pred eEEEEecCCCCchhh--hhccccceeeeecCCcC-c-eEecccccceEEecch--hhhcccCC----------cchheee
Confidence 999999988888776 99999999999988887 3 8999999999999654 33333332 7778999
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEe
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d 288 (471)
++.-|++ .+++|+.|..|++|.-.+. ...+.+|...|+.+++-+++.++-++.||.|++|+
T Consensus 146 v~~l~e~--~~vTgsaDKtIklWk~~~~-----------------l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 146 VASLPEN--TYVTGSADKTIKLWKGGTL-----------------LKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWD 206 (745)
T ss_pred eeecCCC--cEEeccCcceeeeccCCch-----------------hhhhccchhheeeeEEecCCCeEeecCCceEEEEe
Confidence 9999973 8999999999999987432 34566799999999999998888888899999999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
+.. ..+..+.+|.+- +.++.. ..++..++++++|++++
T Consensus 207 ~~g---------------------------------------e~l~~~~ghtn~--vYsis~-~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 207 LDG---------------------------------------EVLLEMHGHTNF--VYSISM-ALSDGLIVSTGEDRTLR 244 (745)
T ss_pred ccC---------------------------------------ceeeeeeccceE--EEEEEe-cCCCCeEEEecCCceEE
Confidence 953 567888899886 888886 77888999999999999
Q ss_pred EEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
||+.. ++.+.+.-....|+++.+-++|. +++|+.||.||||.....
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 99975 77777765556899999988876 566778999999998753
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=4.8e-28 Score=205.67 Aligned_cols=270 Identities=17% Similarity=0.288 Sum_probs=206.8
Q ss_pred eeeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEE---------eecCCCcceeEEEEecCCCCeE
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLS---------FHSGHNDNVFQAKIMPFTDDRS 120 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~ 120 (471)
++..+.+ .|.+.|+.+...|+. ..+|+.+..+.+.|||..+...... .+.+|.+.-++++|++. ....
T Consensus 115 v~i~~~i-~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g~ 192 (422)
T KOG0264|consen 115 VEISQKI-NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEGT 192 (422)
T ss_pred eEEEEec-cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-ccee
Confidence 3444444 499999999999976 5677788889999999865322111 23789988899999995 5678
Q ss_pred EEEEeCCCeEEEEeccccCc-----ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC--ccceeeeecc
Q 012064 121 IVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCRP 193 (471)
Q Consensus 121 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~ 193 (471)
|++++.|++|++||+..... .....+.+|...|..++|++....+|.+++.|+.+.|||+|++ +......
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~--- 269 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK--- 269 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc---
Confidence 99999999999999975433 2345688999999999999998899999999999999999963 2222211
Q ss_pred cCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC
Q 012064 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (471)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (471)
.|...++|++|+|.++.+||+|+.|++|.+||+|+... +...+.+|...|..+.|+|+.
T Consensus 270 -------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------------~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 270 -------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------------PLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred -------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------------CceeccCCCcceEEEEeCCCC
Confidence 27779999999999999999999999999999998762 456677889999999999986
Q ss_pred C-eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 274 E-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 274 ~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
. .|++++ |+.+.+||+..-...+.... ......+.+..-.||... |..+.|
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~ed------------------------a~dgppEllF~HgGH~~k--V~DfsW- 381 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPED------------------------AEDGPPELLFIHGGHTAK--VSDFSW- 381 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhh------------------------hccCCcceeEEecCcccc--cccccC-
Confidence 5 566655 77999999976432221000 000112334566688887 999999
Q ss_pred CCCCcE-EEEeeCCCeEEEEEcc
Q 012064 352 GPKCEY-VVSGSDCGRIFIWKKK 373 (471)
Q Consensus 352 s~~g~~-l~~g~~dg~v~iwd~~ 373 (471)
+|+..+ +++.++|+.++||...
T Consensus 382 np~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCeEEEEecCCceEEEeecc
Confidence 888765 5678999999999975
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.4e-26 Score=207.32 Aligned_cols=293 Identities=12% Similarity=0.126 Sum_probs=205.4
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEE-EEecCCCeEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILW 88 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l-~s~~~d~~i~iw 88 (471)
+..+++++.|+.+++||.++++.+ +.+.+|.. +.+++|+|+|+.+ ++++.++.|++|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~---------------------~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~ 58 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT---------------------RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVI 58 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE---------------------EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEE
Confidence 357889999999999999988766 45555543 6789999999876 567788999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEE-eCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (471)
|..+++....+ ..+. .+..++|+| +++.++++ +.++.+++||+.+.+.+.. +. +...+.+++|+|++. +++
T Consensus 59 d~~~~~~~~~~-~~~~-~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~--~~-~~~~~~~~~~~~dg~-~l~ 130 (300)
T TIGR03866 59 DLATGEVIGTL-PSGP-DPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAE--IP-VGVEPEGMAVSPDGK-IVV 130 (300)
T ss_pred ECCCCcEEEec-cCCC-CccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeE--ee-CCCCcceEEECCCCC-EEE
Confidence 99998877666 3333 356789999 88877654 5689999999987654432 22 223467899999995 666
Q ss_pred EEecCC-eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCccCCCCCCC
Q 012064 168 TCGEDG-LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTRLYDIRKYKWDGSTDFG 245 (471)
Q Consensus 168 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (471)
+++.++ .+..||.++++....... ......++|+|+ +.++ +++..++.|++||+++.+......+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLV-----------DQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEc-----------CCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 666654 577889887765443321 123467899999 4555 55557999999999987644332211
Q ss_pred CCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe--eCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
.+ .. .........++|+|++++++.+ .++.+.+||..+++
T Consensus 199 ~~-------~~-~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~------------------------------ 240 (300)
T TIGR03866 199 IP-------GV-HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE------------------------------ 240 (300)
T ss_pred cc-------cc-ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc------------------------------
Confidence 00 00 0011123468899999975443 35689999987642
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe-eCCCeEEEEEccCCeeeEEecCCCcceEEEEEcC
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g-~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (471)
....+. +.. .+.++.| +|+|++|+++ +.+|.|++||+.+++.+..++.. ...+.++++|
T Consensus 241 --------~~~~~~-~~~--~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 241 --------VLDYLL-VGQ--RVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred --------EEEEEE-eCC--CcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 111121 112 2778888 9999999886 46899999999999999988764 5568888875
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=206.41 Aligned_cols=378 Identities=15% Similarity=0.154 Sum_probs=263.8
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+++++. ++.+|.+.+-+|+|.-||+.+++.. ..+....+.|++++.+|.++.++.|+.
T Consensus 73 E~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~---------------------~~~d~~gg~IWsiai~p~~~~l~Igcd 130 (691)
T KOG2048|consen 73 ESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK---------------------YNIDSNGGAIWSIAINPENTILAIGCD 130 (691)
T ss_pred eeEEEc-cCCeEEeecCCceEEEEecccCcee---------------------EEecCCCcceeEEEeCCccceEEeecC
Confidence 345565 5667888888999999999987766 677788899999999999999999999
Q ss_pred CCeEEEEECCCCceEEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee-----eEeec-eeeeEE
Q 012064 82 DRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-----KLLGK-HQGRAH 154 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~-~~~~v~ 154 (471)
||.+..++...+...... +...++.|.+++|+| ++..++.|+.||.|++||...+..... ..+.. ...-|+
T Consensus 131 dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 131 DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred CceEEEEecCCceEEEEeecccccceEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 998888887777654433 345678999999999 999999999999999999988776541 11222 345678
Q ss_pred EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 155 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
++.|..++ .+++|..-|+|.+||...+..++.+.+ +...|.+++..++ +.++++++.|+.|..|...
T Consensus 209 Sv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~----------h~adVl~Lav~~~-~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 209 SVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSC----------HDADVLALAVADN-EDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EEEEeecC--cEEEecCCceEEEEcccCcchhhhhhh----------hhcceeEEEEcCC-CCeEEEccCCCceEEEEec
Confidence 89888777 589999999999999999999888876 6667899999887 6788888888888877765
Q ss_pred CCccC--CC-------C-----------------------------C---------------------------------
Q 012064 235 KYKWD--GS-------T-----------------------------D--------------------------------- 243 (471)
Q Consensus 235 ~~~~~--~~-------~-----------------------------~--------------------------------- 243 (471)
+.+.. .. . +
T Consensus 276 ~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v 355 (691)
T KOG2048|consen 276 TNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGV 355 (691)
T ss_pred CCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccc
Confidence 54220 00 0 0
Q ss_pred ----CCCC--C---CcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCC--CCCCCc-cccccccc
Q 012064 244 ----FGQP--A---DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP--PPSSPV-STRSEASE 311 (471)
Q Consensus 244 ----~~~~--~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~--~~~~~~-~~~~~~~~ 311 (471)
++.. . .......+.......|.+.+.+|+|++++.+.-...++|.+........ ....+. ........
T Consensus 356 ~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ 435 (691)
T KOG2048|consen 356 DLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAIS 435 (691)
T ss_pred cceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeE
Confidence 0000 0 0000111222335668999999999999999877778887765321111 111111 11222222
Q ss_pred cCCCCCCccCCCCCC---------cccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 312 MGSDHTSAASPSTAN---------TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
+.-++..+...+.+. ....+....+........|..+.. +|+|+|+|+.+.+|.|.+|++++++......
T Consensus 436 ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~-SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 436 FTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVV-SSDGNYIAAISTRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred EEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEE-cCCCCEEEEEeccceEEEEEcccceeecchh
Confidence 333333333222111 111222222222223334888887 9999999999999999999998887654443
Q ss_pred CCCcceEEEEEcC-CCCEEEEeecCCcEEEecCCCC
Q 012064 383 ADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 383 ~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
.-...++.++++| +.+.|+.+..|+.+.-+|++..
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 4457899999995 4568888888999999999543
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.6e-27 Score=191.30 Aligned_cols=308 Identities=17% Similarity=0.224 Sum_probs=227.6
Q ss_pred eccccccEEEEEEcC-CCCEEEEecCCCeEEEEECCCCce----------EE----EeecCCCcceeEEEEecCCCCeEE
Q 012064 57 LDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERV----------KL----SFHSGHNDNVFQAKIMPFTDDRSI 121 (471)
Q Consensus 57 l~~h~~~V~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~----------~~----~~~~~~~~~v~~~~~~~~~~~~~l 121 (471)
...|.+.|+++...+ .|+++++|+.||.|.+||+++-.. +. .-..+|+-.|..+.|-|. |...+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCcee
Confidence 346899999999987 689999999999999999976431 01 112468889999999996 77889
Q ss_pred EEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC--CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCc
Q 012064 122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS--PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (471)
Q Consensus 122 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (471)
.+++.|.++++||..+.+.... ...++.|.+-+++|-. ..++++|..+-.|++-|+.+|.....+..
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~---F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG-------- 186 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVD---FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG-------- 186 (397)
T ss_pred ecccccceEEEeecccceeeEE---eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc--------
Confidence 9999999999999987665443 2356788888888843 24778888899999999999998877765
Q ss_pred ceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc-cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE
Q 012064 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (471)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (471)
|...|.++.|+|.....|++|+.||.|++||++... ....++.... ...........|.+.+..++|+.++.++++
T Consensus 187 --Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 187 --HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred --ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccccccceeeeeeecccchhhhh
Confidence 666899999999988889999999999999998652 1111111110 111112234567899999999999999988
Q ss_pred ee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcE
Q 012064 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (471)
Q Consensus 279 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~ 357 (471)
.+ ++.+++|+..++....... .+....-..+.. ..+.++ +...
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~------------------------------g~~~~n~~~~~~-~~~~~~-----~s~v 307 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREF------------------------------GPIIHNQTTSFA-VHIQSM-----DSDV 307 (397)
T ss_pred ccCccceEEeecccCccccccc------------------------------ccccccccccce-EEEeec-----ccce
Confidence 77 7899999998875332211 000111011111 012221 2222
Q ss_pred EEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 358 l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
++---.++.+.++++-.|+.+..+..|-..|.+.++-|+=+...+++.|+.|..|.+.
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 2222335889999999999999999998899999999999999999999999999983
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-28 Score=195.98 Aligned_cols=277 Identities=17% Similarity=0.256 Sum_probs=221.5
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEE
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~ 86 (471)
....+.+.+++.|.+.+||.+++|.++ .++.||.+.|+++.|++.+.++++++.|++-.
T Consensus 157 ~~tqpi~gtASADhTA~iWs~Esg~CL---------------------~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 157 DSTQPICGTASADHTARIWSLESGACL---------------------ATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred hcCCcceeecccccceeEEeeccccce---------------------eeecccccceeeEEeccccceEEEccCCcchH
Confidence 345568889999999999999999998 68999999999999999999999999999999
Q ss_pred EEEC------CC------------------------------C----ceEEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 87 LWDW------KT------------------------------E----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 87 iwd~------~~------------------------------~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
||.. .. + .++..+ .+|.+.|.+..|.. .++.+++++.
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~--gg~Q~vTaSW 292 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLA--GGQQMVTASW 292 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-eccccceEehhhhc--Ccceeeeeec
Confidence 9972 11 0 112333 78999999999998 9999999999
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc-cceeeeecccCCcCcceeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 205 (471)
|.+..+||+++++.+.. +.+|....+.++-+|.. +++++++.|.+.++||++..- .+..|+. |...
T Consensus 293 DRTAnlwDVEtge~v~~--LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQG----------Htdt 359 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNI--LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQG----------HTDT 359 (481)
T ss_pred cccceeeeeccCceecc--ccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecc----------cccc
Confidence 99999999999998876 99999999999999988 689999999999999998432 2223332 6668
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cE
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FI 284 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i 284 (471)
|++..|.-+ ..+++|+.|.+|++||+++..- +...+ ...++++.++.+..+..++.-.|+ .|
T Consensus 360 VTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs--------------plATI-RtdS~~NRvavs~g~~iIAiPhDNRqv 422 (481)
T KOG0300|consen 360 VTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS--------------PLATI-RTDSPANRVAVSKGHPIIAIPHDNRQV 422 (481)
T ss_pred eeEEEEecC--CceeecCCCceEEEeeeccccC--------------cceee-ecCCccceeEeecCCceEEeccCCceE
Confidence 999999986 4799999999999999998751 11111 125778999999988899888876 79
Q ss_pred EEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC--cEEEEee
Q 012064 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--EYVVSGS 362 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g--~~l~~g~ 362 (471)
++||++....... +...-++|... |.|++| ..+. .-|++++
T Consensus 423 RlfDlnG~RlaRl----------------------------------PrtsRqgHrRM--V~c~AW-~eehp~cnLftcG 465 (481)
T KOG0300|consen 423 RLFDLNGNRLARL----------------------------------PRTSRQGHRRM--VTCCAW-LEEHPACNLFTCG 465 (481)
T ss_pred EEEecCCCccccC----------------------------------Cccccccccee--eeeeec-cccCccccccccc
Confidence 9999987543221 22344567665 888888 4332 3467888
Q ss_pred CCCeEEEEEccC
Q 012064 363 DCGRIFIWKKKG 374 (471)
Q Consensus 363 ~dg~v~iwd~~~ 374 (471)
-|..+.=|++..
T Consensus 466 FDR~v~gW~in~ 477 (481)
T KOG0300|consen 466 FDRMVAGWKINT 477 (481)
T ss_pred ccceeeeeEecc
Confidence 899999998754
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.8e-28 Score=210.45 Aligned_cols=288 Identities=16% Similarity=0.225 Sum_probs=232.4
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eEEEee-cCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
+.+++| .|..-|.++.+|...+++.||+. |.|+|||+.... ++..+. .....-|.++...| ||+.|++|+.-
T Consensus 411 rq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGea 486 (705)
T KOG0639|consen 411 RQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEA 486 (705)
T ss_pred Hhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEecccc
Confidence 444455 48899999999999999999987 679999996432 222221 12345788999999 99999999999
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
.++.|||+..........+....-...+++.+||. ++.+++..||.|.|||+.+...++.++. |...+.
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqG----------htDGas 555 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGAS 555 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccC----------CCCCce
Confidence 99999999877654443354444567889999999 6889999999999999999998888875 555789
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC-CcEEE
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYL 286 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i 286 (471)
|+..++| |..|.+|+-|.+||.||++++......+| .+.|.++.++|++.+|+.|-. +.+.+
T Consensus 556 cIdis~d-GtklWTGGlDntvRcWDlregrqlqqhdF----------------~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 556 CIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQHDF----------------SSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eEEecCC-CceeecCCCccceeehhhhhhhhhhhhhh----------------hhhheecccCCCccceeeecccCcEEE
Confidence 9999999 78999999999999999999875444333 578999999999999999984 47777
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCe
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~ 366 (471)
...... ....+.-|... |.++.| .+.|+++++.+.|..
T Consensus 619 lh~skp---------------------------------------~kyqlhlheSc--VLSlKF-a~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 619 LHTSKP---------------------------------------EKYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNL 656 (705)
T ss_pred EecCCc---------------------------------------cceeecccccE--EEEEEe-cccCceeeecCchhh
Confidence 765431 22333444444 999999 999999999999999
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
+-.|...-|..+.+.+. ...|.++..|.|.++++||+.|..-.+|.+
T Consensus 657 LnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 657 LNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999988888877764 468999999999999999999988888765
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=201.03 Aligned_cols=290 Identities=11% Similarity=0.158 Sum_probs=226.8
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceEEEeecCCCcceeEEEEecCCCCe-EEEEEeCCCeEEEEeccc
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILE 137 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 137 (471)
.++|+++.|+|....|++|+.|++++||.++.. ..+..+ .--..+|.+.+|.| +|. .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecC--CCceEEEecccceEEEEeeccc
Confidence 478999999999999999999999999987532 233333 23466899999999 888 889999999999999998
Q ss_pred cCcceeeEeecee-eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 138 RGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 138 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
.+......+.++. ..+....++++++ +++..|..|.|.+....+++.+..++ -.+.+..++|+.+ +
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~K-----------ieG~v~~~~fsSd-s 356 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFK-----------IEGVVSDFTFSSD-S 356 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheee-----------eccEEeeEEEecC-C
Confidence 8776655555555 4567888999994 78999999999999999999988887 4457999999998 5
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~ 295 (471)
..|++++.+|.|++||++..... ........-.-++++.++++.+||+|+ .|-|.|||.++....
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~--------------~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCL--------------HRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceE--------------EEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 78888888999999999987532 233333333457788889999999999 457899997653211
Q ss_pred CCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC--CCeEEEEEcc
Q 012064 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFIWKKK 373 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~--dg~v~iwd~~ 373 (471)
.. ..++..+..-.. .|.++.| ++|++.||.++. +..+++-.+.
T Consensus 423 ~~--------------------------------PkPik~~dNLtt--~Itsl~F-n~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 423 TN--------------------------------PKPIKTVDNLTT--AITSLQF-NHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred CC--------------------------------CCchhhhhhhhe--eeeeeee-CcchhhhhhhhhccccceEEEecc
Confidence 11 222333332222 3899999 999999998775 5679998887
Q ss_pred CCeeeEEecCCC---cceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 374 GGELIRVIEADR---HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 374 ~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+......+.... +.|+|++|||.+.+||.|.++|++.+|.+.
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 776666554432 469999999999999999999999999875
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=5.6e-27 Score=201.43 Aligned_cols=330 Identities=19% Similarity=0.221 Sum_probs=239.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
++.|.+++. +++|.++|.|.||+..+.+.. ++...|.+.|.+++.-.+|.+| +|+.|
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~~---------------------k~~~aH~ggv~~L~~lr~Gtll-SGgKD 307 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNRIS---------------------KQVHAHDGGVFSLCMLRDGTLL-SGGKD 307 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCceEE---------------------eEeeecCCceEEEEEecCccEe-ecCcc
Confidence 345666654 779999999999999866655 3444999999999999999765 49999
Q ss_pred CeEEEEECCCCc-----------eEEE----------------------------eecCCCcceeEEEEecCCCCeEEEE
Q 012064 83 RRVILWDWKTER-----------VKLS----------------------------FHSGHNDNVFQAKIMPFTDDRSIVT 123 (471)
Q Consensus 83 ~~i~iwd~~~~~-----------~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~~l~s 123 (471)
+.|..||-.-.+ .++. ...+|....+.++.+| +.+.+++
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp--s~~q~~T 385 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP--SKNQLLT 385 (626)
T ss_pred ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--Chhheee
Confidence 999999832100 0011 0135778888999999 8999999
Q ss_pred EeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceee
Q 012064 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (471)
++.|+.+++|+ ..+..-. .....+..++.|+|.| .++.|+..|...+.|.++...+..-. ..
T Consensus 386 ~gqdk~v~lW~--~~k~~wt---~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~-----------d~ 447 (626)
T KOG2106|consen 386 CGQDKHVRLWN--DHKLEWT---KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHT-----------DN 447 (626)
T ss_pred ccCcceEEEcc--CCceeEE---EEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEe-----------cC
Confidence 99999999999 3333332 3356789999999998 58999999999999999976655544 34
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE- 282 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~- 282 (471)
.++++++|+|+ |.+||.|+.|+.|++|.+....... ...-..+..+|+.+.|++|+++|.+.+-+
T Consensus 448 ~~ls~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~~y-------------~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 448 EQLSVVRYSPD-GAFLAVGSHDNHIYIYRVSANGRKY-------------SRVGKCSGSPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred CceEEEEEcCC-CCEEEEecCCCeEEEEEECCCCcEE-------------EEeeeecCceeEEeeecCCCceEEeccCce
Confidence 47999999999 7999999999999999987654211 11112223789999999999999999966
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCC--eeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP--QVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
.|..|............ ..... ...+. ....+......+..++- +.+.+.+|+
T Consensus 514 eiLyW~~~~~~~~ts~k--DvkW~----------------------t~~c~lGF~v~g~s~~t~i~a~~r-s~~~~~lA~ 568 (626)
T KOG2106|consen 514 EILYWKPSECKQITSVK--DVKWA----------------------TYTCTLGFEVFGGSDGTDINAVAR-SHCEKLLAS 568 (626)
T ss_pred EEEEEccccCcccceec--ceeee----------------------eeEEEEEEEEecccCCchHHHhhh-hhhhhhhhc
Confidence 78889433322111100 00000 00000 01111112222566665 788899999
Q ss_pred eeCCCeEEEEEccCC---eeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 361 GSDCGRIFIWKKKGG---ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 361 g~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
|.+.|.|++|...-- ....++.+|++.|++++|.-+.+.|++.+.|..|..|++
T Consensus 569 gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 569 GDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999999986433 234577899999999999988888888889999999986
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=209.58 Aligned_cols=313 Identities=21% Similarity=0.275 Sum_probs=219.1
Q ss_pred ccccEEE--EEEcC---CCCEEEEecCCCeEEEEECCCCceE-----EEeecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 60 HRGCVNT--VSFNT---DGDILISGSDDRRVILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 60 h~~~V~~--~~~s~---~g~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
|.-++.- ..|++ ....||.+..||.|.++|....... ......|...|.++.|.| ....|++++.|.+
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT 123 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDST 123 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCce
Confidence 3334443 56655 2368999999999999998654321 123368999999999999 8899999999999
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccce--e-----eeeccc-----C--
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE--L-----FTCRPI-----D-- 195 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~-----~~~~~~-----~-- 195 (471)
+++||+.+.+......+.+|...+.+++|.|.++.+|++|+.||.|.|||++...... . ...+.. .
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 9999999998877767889999999999999999999999999999999998654110 0 000000 0
Q ss_pred ---CcCcceee----eeeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEE
Q 012064 196 ---DRRNYMTV----VNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (471)
Q Consensus 196 ---~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (471)
......+. ..|+.+.| .| ...|++++. |+.|++||++......... |........ .....-.+.++
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~e---p~~~~~~~t-~skrs~G~~nL 277 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQE---PRGSDKYPT-HSKRSVGQVNL 277 (720)
T ss_pred hccccccccccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccC---CCcccCccC-cccceeeeEEE
Confidence 00011122 23444444 55 467888776 9999999999875432211 111000000 01224457788
Q ss_pred EEcCCCCe-EEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCcee-Ee
Q 012064 268 AFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-TV 345 (471)
Q Consensus 268 ~~~~~~~~-l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 345 (471)
.....|.+ +|++.|+.|+.|++..-. ..+...+.++.... .+
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s------------------------------------~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLS------------------------------------ISPVAEFSGKLNSSFYV 321 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccC------------------------------------cCchhhccCcccceeee
Confidence 88877765 566679999999997632 12233444443321 12
Q ss_pred eeeeeeCCCCcEEEEeeCCCeEEEEEccCCee-eEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEEecCCCCC
Q 012064 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL-IRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 346 ~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 418 (471)
.++ .+||+.++++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|..- -++++++|.+++||++..+-
T Consensus 322 ks~--lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 322 KSE--LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eee--cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 222 389999999999999999999987643 466789999999999998643 57788999999999996543
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=191.79 Aligned_cols=298 Identities=16% Similarity=0.198 Sum_probs=220.4
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 64 V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
-.|+.||+.|.+||+|+.||.|.|||+.+...- ..+.+|..+|.+++|++ ||+.|++++.|..|.+||+..+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-r~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-RMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-hhhhccccceeEEEecC--CCCEeeeecCCceeEEEeccCCCceeE
Confidence 689999999999999999999999999988864 44489999999999999 999999999999999999999987665
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
.. ...+|+...|+|...+.++++-.+..-.+.++..+... .+....... ......+..|++. |+++++|.
T Consensus 103 ir---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~d-----ln~sas~~~fdr~-g~yIitGt 172 (405)
T KOG1273|consen 103 IR---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGD-----LNSSASHGVFDRR-GKYIITGT 172 (405)
T ss_pred EE---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccc-----cccccccccccCC-CCEEEEec
Confidence 33 56899999999988777776666665666666553221 111111000 1111233468887 79999999
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCC
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~ 302 (471)
..|.+.+||..+.+....... ..-..|..+.++..|++|+..+ |..|+.|++..-.....
T Consensus 173 sKGkllv~~a~t~e~vas~ri--------------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r----- 233 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRI--------------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR----- 233 (405)
T ss_pred CcceEEEEecchheeeeeeee--------------chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc-----
Confidence 999999999998875443211 1135688999999999998887 45799999864211100
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC-CeEEEEEccCCeeeEEe
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVI 381 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d-g~v~iwd~~~~~~~~~~ 381 (471)
....++.++++.--+...-.+++| +.+|.|+++|+.. ..++||.-..|.+++.|
T Consensus 234 ------------------------~~e~e~~~K~qDvVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 234 ------------------------DGEVEPEHKLQDVVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred ------------------------cCCcChhHHHHHHHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeee
Confidence 000112223332222222456777 9999999988753 67999999999999999
Q ss_pred cCCC-cceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 382 EADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 382 ~~h~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
.|.. .....+.|+|-...+++- ..|.++||.....+.
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 9887 567889999999999888 689999999875443
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=215.36 Aligned_cols=296 Identities=19% Similarity=0.243 Sum_probs=229.1
Q ss_pred ccccEE---EEEEcC-CCCEEEEecCCCeEEEEECCCCce------EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 60 HRGCVN---TVSFNT-DGDILISGSDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 60 h~~~V~---~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
|...|. .+..++ .+++|.|||.||.|++|++..... ..++ ..|...|+++...- +++.|++++.|-+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~--~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCG--NGKTLISASSDTT 96 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhc--CCCceEEecCCce
Confidence 444455 444543 567899999999999999854332 3334 67999999999988 9999999999999
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEE-ccCCCcEEEEEecCCeEEEEeccCCcc--ceeeeecccCCcCcceeeeee
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v 206 (471)
|++|+...+.......+..|.+.|.|+++ -++. .++++||-|+.|.+||++++.. +..+......... ..+..++
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~-sG~k~si 174 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG-SGPKDSI 174 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCC-CCCccce
Confidence 99999987754444558899999999999 5555 6899999999999999998833 3333222222221 0255689
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~ 285 (471)
++++.++. +..+++|+..+.+++||.++.+.. . .+.+|...|..+..++||..+++++ |++|+
T Consensus 175 YSLA~N~t-~t~ivsGgtek~lr~wDprt~~ki--------------m-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 175 YSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKI--------------M-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred eeeecCCc-ceEEEecCcccceEEeccccccce--------------e-eeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence 99999998 689999999999999999987632 2 2347899999999999999888877 77999
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
+||+.. ..++.++..|... ++++.. +|+-.++++|+.||
T Consensus 239 lWdLgq--------------------------------------QrCl~T~~vH~e~--VWaL~~-~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 239 LWDLGQ--------------------------------------QRCLATYIVHKEG--VWALQS-SPSFTHVYSGGRDG 277 (735)
T ss_pred eeeccc--------------------------------------cceeeeEEeccCc--eEEEee-CCCcceEEecCCCC
Confidence 999976 4667788888887 899988 99999999999999
Q ss_pred eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
.|+.=|+.+......+-....+|..+..+.+.+-+-+++.|+.|+-|.....
T Consensus 278 ~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 278 NIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred cEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999999874332222233456777777755555566778999999987643
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.4e-27 Score=199.37 Aligned_cols=291 Identities=13% Similarity=0.215 Sum_probs=221.7
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCC-EEEEe
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISG 79 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~-~l~s~ 79 (471)
|.++.|+|..+.|++|+.||+++||.++ |+.-+ .++.+.--..+|.+.+|.|+|. .++++
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~------------------~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNP------------------KLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEec-CccCh------------------hheeeeeccCccceeeecCCCceEEEec
Confidence 5678999999999999999999999988 55431 3345555678999999999998 88999
Q ss_pred cCCCeEEEEECCCCceEEEe-ecCCC-cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 80 SDDRRVILWDWKTERVKLSF-HSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
+....+..||+.+.+...-- ..++. ..+.....+| ++++|+..+..|.|.+....+++.+.... -.+.|..++
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~K---ieG~v~~~~ 351 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSFK---IEGVVSDFT 351 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecC--CCCeEEEcccCceEEeehhhhhhhhheee---eccEEeeEE
Confidence 99999999999887753221 12333 3567778899 99999999999999999998888876532 457899999
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
|+.++ +.+++++.+|.|.+||++...+...+.... ...-++++.+++ +.+||+|+..|.|.|||.++--
T Consensus 352 fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G---------~v~gts~~~S~n-g~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 352 FSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVDDG---------SVHGTSLCISLN-GSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EecCC-cEEEEEcCCceEEEEecCCcceEEEEeecC---------ccceeeeeecCC-CceEEeccCcceEEEeccchhh
Confidence 99999 567888888999999999998877776321 112356777787 7899999999999999976532
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee---CCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
... ...|......-...|+++.|+|++++||.++ .+.+++..+.+......++
T Consensus 421 ~s~---------~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP--------------- 476 (514)
T KOG2055|consen 421 AST---------NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP--------------- 476 (514)
T ss_pred ccC---------CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC---------------
Confidence 111 1123333444467799999999999999888 3468888876643222211
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
.. ...-..++|++| +|.|.++|.|.++|.|.+|.+.
T Consensus 477 -----------------~~-----n~~vg~vtc~aF-SP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 -----------------TS-----NTKVGHVTCMAF-SPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -----------------CC-----CCcccceEEEEe-cCCCceEEeecCCCceeeEeec
Confidence 00 111123899999 9999999999999999999874
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.7e-27 Score=200.30 Aligned_cols=258 Identities=16% Similarity=0.210 Sum_probs=205.9
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce--------eeEeeceeeeEEEEEEccCCCcEEEEEecC
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE--------TKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 172 (471)
..|.+.|+.+++.|. +...+++.+..+.+.|||........ ...+.+|...-++++|++...-.+++++.|
T Consensus 121 i~h~gEVnRaRymPQ-np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQ-NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCC-CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 368999999999993 56667777888999999986543322 235889999889999999887789999999
Q ss_pred CeEEEEeccCCccc-eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcC
Q 012064 173 GLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 173 g~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (471)
+.|++||+...... ..... .. ..+.|...|..++|+|.+..+|++++.|+.+.|||+|+.+ .
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p--~~--~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-------------~ 262 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDP--KT--IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-------------S 262 (422)
T ss_pred CcEEEEeccccccCCccccc--eE--EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-------------C
Confidence 99999999765442 11100 00 0112667899999999988999999999999999999631 1
Q ss_pred CCCcccCCCccceEEEEEcCCC-CeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccc
Q 012064 252 CPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (471)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (471)
++......|.+.+.+++|+|-+ ..||+++ |++|.+||+++-
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------------------------------- 305 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------------------------------- 305 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc-------------------------------------
Confidence 3455667789999999999965 5677887 779999999875
Q ss_pred ccCCeeeecCCceeEeeeeeeeCCCC-cEEEEeeCCCeEEEEEccCC--------------eeeEEecCCCcceEEEEEc
Q 012064 330 RIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGG--------------ELIRVIEADRHVVNCIEPH 394 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~~dg~v~iwd~~~~--------------~~~~~~~~h~~~v~~~~~s 394 (471)
..++..+.+|... |.++.| +|+. ..||+++.|+.+.+||+..- +++..-.||...|..+.|+
T Consensus 306 ~~~lh~~e~H~de--v~~V~W-SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 306 NKPLHTFEGHEDE--VFQVEW-SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred ccCceeccCCCcc--eEEEEe-CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 4567899999997 999999 8865 57889999999999998532 3345557899999999999
Q ss_pred CCCC-EEEEeecCCcEEEecCCC
Q 012064 395 PHST-VLASSGIESDIKILTPNA 416 (471)
Q Consensus 395 ~~~~-~l~s~~~dg~i~iw~~~~ 416 (471)
|... .++|+++|+.+.||....
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 9988 678999999999999874
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=8.9e-26 Score=194.11 Aligned_cols=312 Identities=16% Similarity=0.249 Sum_probs=232.6
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc-cccEEEEEEcCCCCEEEEecCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~~g~~l~s~~~d 82 (471)
+.|+|...-|...+..|-+.+|+++.+.+.. ....++++ ...|.|++|.++|+ ++||..+
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k------------------~~~~fek~ekk~Vl~v~F~engd-viTgDS~ 266 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSLVK------------------RQGIFEKREKKFVLCVTFLENGD-VITGDSG 266 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCceEE------------------EeeccccccceEEEEEEEcCCCC-EEeecCC
Confidence 5688887777766779999999999777663 11233333 37899999999987 6799999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
|.|.||+..+.+..++.. .|.+.|.+++... +|. |++|+.|..|..||- .-+......++...++|..++=...
T Consensus 267 G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr--~Gt-llSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~- 340 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQVH-AHDGGVFSLCMLR--DGT-LLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKG- 340 (626)
T ss_pred ceEEEEeCCCceEEeEee-ecCCceEEEEEec--Ccc-EeecCccceEEeccc-cccccccccCchhcCCeeEEecCCC-
Confidence 999999998777777775 9999999999997 665 555999999999993 3333333346666677877654433
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
. ++.|+..+.|.-=.++++-....+. |......++.+|+ ...+++++.|+.+++|+ ..++.-
T Consensus 341 -d-i~vGTtrN~iL~Gt~~~~f~~~v~g-----------h~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~w-- 402 (626)
T KOG2106|consen 341 -D-ILVGTTRNFILQGTLENGFTLTVQG-----------HGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEW-- 402 (626)
T ss_pred -c-EEEeeccceEEEeeecCCceEEEEe-----------cccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeE--
Confidence 3 6778777777766666665444333 5557899999999 68999999999999999 222111
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
...-..+..++.|+|.| .++.|. .|...+.|.++.
T Consensus 403 --------------t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~----------------------------- 438 (626)
T KOG2106|consen 403 --------------TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ----------------------------- 438 (626)
T ss_pred --------------EEEecCceeEeeccCcc-eEEEeeccceEEEEecccc-----------------------------
Confidence 11124568899999999 777766 788999998762
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC-eeeEEe-cCCCcceEEEEEcCCCCE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVI-EADRHVVNCIEPHPHSTV 399 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~-~~~~~~-~~h~~~v~~~~~s~~~~~ 399 (471)
..+.-|.....+..+.| +|+|.+||.|+.|+.|+||.+..+ ...... +.|.++|+.+.||+|+++
T Consensus 439 ------------~lv~~~~d~~~ls~v~y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 439 ------------DLVTIHTDNEQLSVVRY-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred ------------eeEEEEecCCceEEEEE-cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence 12222222334889998 999999999999999999998654 333332 334479999999999999
Q ss_pred EEEeecCCcEEEecCC
Q 012064 400 LASSGIESDIKILTPN 415 (471)
Q Consensus 400 l~s~~~dg~i~iw~~~ 415 (471)
|.+-+-|-.|..|...
T Consensus 506 ~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKPS 521 (626)
T ss_pred EEeccCceEEEEEccc
Confidence 9999999999999443
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=7.4e-27 Score=208.13 Aligned_cols=368 Identities=17% Similarity=0.205 Sum_probs=253.8
Q ss_pred CCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCC---EEEEecCCCe
Q 012064 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD---ILISGSDDRR 84 (471)
Q Consensus 8 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~---~l~s~~~d~~ 84 (471)
++.-.+|.|+.+..|.++.-.+. ++.....+.||.+.|.+++|...+. +||++|.|..
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~d-------------------~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y 217 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSAD-------------------SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY 217 (764)
T ss_pred CCcEEEEecCcceEEEEeccCCc-------------------ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE
Confidence 44455777888888888875533 4456689999999999999987554 8999999999
Q ss_pred EEEEECCCCc------------------------eEE------EeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 85 VILWDWKTER------------------------VKL------SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 85 i~iwd~~~~~------------------------~~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
||||.+.-+. .+. .++.+|...|+++.|+| .+..|++++.|.++.+|.
T Consensus 218 IRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~ 295 (764)
T KOG1063|consen 218 IRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWK 295 (764)
T ss_pred EEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEe
Confidence 9999874322 011 22358999999999999 999999999999999999
Q ss_pred ccccCccee--eEe---eceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 135 ILERGGVET--KLL---GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 135 ~~~~~~~~~--~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
..+...+-. ..+ .+......+..|+|++ +.+++-+.-|..++|..+....-... ....+ |...|.++
T Consensus 296 pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~-----~~iSG--H~~~V~dv 367 (764)
T KOG1063|consen 296 PDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQE-----PVISG--HVDGVKDV 367 (764)
T ss_pred cCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeec-----ccccc--ccccceee
Confidence 876644322 112 2233457888999999 68899999999999983322111111 11122 67789999
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEe
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFT 288 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d 288 (471)
+|+|. |.++++.+.|-+-|+|-.-..+.. -..+ ....-|.-.++|+++-+....++++.+. -+++|+
T Consensus 368 ~W~ps-GeflLsvs~DQTTRlFa~wg~q~~-wHEi----------aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 368 DWDPS-GEFLLSVSLDQTTRLFARWGRQQE-WHEI----------ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred eecCC-CCEEEEeccccceeeecccccccc-eeee----------cccccccccceeeehccCCceeeecccceeeeeec
Confidence 99999 679999999999999876632211 1011 1112245668999998865567777766 579998
Q ss_pred cCCCC----------CCCCCCCCCcccc-------ccccc--cCCCCCCc------c---------CCCCCC----cccc
Q 012064 289 QDMGL----------GPNPPPSSPVSTR-------SEASE--MGSDHTSA------A---------SPSTAN----TDVR 330 (471)
Q Consensus 289 ~~~~~----------~~~~~~~~~~~~~-------~~~~~--~~~~~~~~------~---------~~~~~~----~~~~ 330 (471)
..... ........+.... ..+.. ....+... . .+...+ ....
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 75321 0000000000000 00000 00011110 0 000000 1123
Q ss_pred cCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC-----CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec
Q 012064 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (471)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d-----g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (471)
+.++++.||... |.+++. +|+|+++|++... ..|++|+..+...+..+.+|+-.|+.++||||+++|++.|.
T Consensus 516 PEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 516 PEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred hhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence 456778888887 999998 9999999998654 46999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCC
Q 012064 406 ESDIKILTPNAADR 419 (471)
Q Consensus 406 dg~i~iw~~~~~~~ 419 (471)
|.++.+|+......
T Consensus 593 DRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIK 606 (764)
T ss_pred CceEEeeeeecccc
Confidence 99999999865543
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-27 Score=186.12 Aligned_cols=260 Identities=21% Similarity=0.336 Sum_probs=204.5
Q ss_pred EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc-ceeeEeeceeeeEEEEEEc-cCCCcEEEEEecCCe
Q 012064 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIE-PGSPHVFYTCGEDGL 174 (471)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~ 174 (471)
.++...|+..|.++...- -|+.|++|+.|++|+|+.++.+.. .....+.+|.++|..++|. |.-..+|++++.||.
T Consensus 4 q~idt~H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred eehhhhhhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 344567888898888776 799999999999999999987765 4556699999999999996 443379999999999
Q ss_pred EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC-CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCC
Q 012064 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (471)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (471)
|.||.-++++..+...... |...|++++|.|.+ +..|++++.||.|.+.+.+.... ...
T Consensus 82 VIiWke~~g~w~k~~e~~~--------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~------------w~t 141 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAA--------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG------------WTT 141 (299)
T ss_pred EEEEecCCCchhhhhhhhh--------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC------------ccc
Confidence 9999998886554433211 67789999999973 45788999999999999987521 122
Q ss_pred CcccCCCccceEEEEEcCC---C-----------CeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 254 PNLIGDEQVGITGLAFSDQ---S-----------ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
..+...|.-.+++++|.|. | +.|++++ |+.|+||+...+.
T Consensus 142 ~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------------------- 196 (299)
T KOG1332|consen 142 SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------------------- 196 (299)
T ss_pred hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------------------------
Confidence 4556678888999999986 4 4688877 6789999987752
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC----cEEEEeeCCCeEEEEEccCC--e-eeEEecCCCcceEEE
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKGG--E-LIRVIEADRHVVNCI 391 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g----~~l~~g~~dg~v~iwd~~~~--~-~~~~~~~h~~~v~~~ 391 (471)
....+.+.+|.+. ++.++| .|.- .+||++++||+|.||....- + ....++.....+..+
T Consensus 197 -----------w~~e~~l~~H~dw--VRDVAw-aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 197 -----------WKLERTLEGHKDW--VRDVAW-APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred -----------hhhhhhhhhcchh--hhhhhh-ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 2334568999987 999998 7753 48999999999999986521 1 112334456789999
Q ss_pred EEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 392 EPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
.||+.|+.|+.++.|+.|.+|.-...
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCCC
Confidence 99999999999999999999987643
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-26 Score=210.98 Aligned_cols=286 Identities=13% Similarity=0.195 Sum_probs=220.5
Q ss_pred ccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 58 ~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
.+|.+.-+.++|.|+|.+|.+++.||.|++|+.... +....+ ..+...|.+++- ++.+|++++.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~----~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIAC----YSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEee----cccceEEeeccceEEEeeCC
Confidence 368999999999999999999999999999998766 333333 337778888776 56699999999999999998
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
+++.--. +...+-++.+++|+-+| ..++.|+.|-.|++.++.+......+.. +..+|.++.|+|. +
T Consensus 85 s~~~~~i--L~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrg----------h~apVl~l~~~p~-~ 150 (933)
T KOG1274|consen 85 SGEEDTI--LARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRG----------HDAPVLQLSYDPK-G 150 (933)
T ss_pred CCCccce--eeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecc----------cCCceeeeeEcCC-C
Confidence 8766433 66678899999999999 5789999999999999998887777764 7779999999998 7
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC-CCeEEEeeCCcEEEEecCCCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~d~~~~~~~ 295 (471)
++||+.+.||.|++||+.++.+...+..-.+... ......+..++|+|+ |.+++.+.++.|.+|+..+..
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-- 221 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-- 221 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCcccc-------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce--
Confidence 9999999999999999998876544332211111 111455778999999 566677779999999988743
Q ss_pred CCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
....+........+..+.| +|+|+|||+++.||.|.|||.++.
T Consensus 222 ------------------------------------~~f~Lr~~~~ss~~~~~~w-sPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 222 ------------------------------------LQFKLRDKLSSSKFSDLQW-SPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ------------------------------------eheeecccccccceEEEEE-cCCCcEEeeeccCCcEEEEecccc
Confidence 3333433332223778888 999999999999999999999873
Q ss_pred eeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEe
Q 012064 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (471)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (471)
+. ......|.+++|.|+++.+-.-...|...+|
T Consensus 265 ~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 265 ER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred hh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 22 2234579999999998865444444444443
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=6.7e-28 Score=206.98 Aligned_cols=277 Identities=17% Similarity=0.289 Sum_probs=216.8
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+..++..+++.+|+ .|.|+|||+....-. .-+..+.+ ....+.|.++.+.|||+.|++|+.-.
T Consensus 425 vtIS~~trhVyTgG-kgcVKVWdis~pg~k------------~PvsqLdc----l~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 425 VTISNPTRHVYTGG-KGCVKVWDISQPGNK------------SPVSQLDC----LNRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred EEecCCcceeEecC-CCeEEEeeccCCCCC------------Cccccccc----cCcccceeeeEecCCCceEEeccccc
Confidence 45677788888887 788999999832111 00111111 12357899999999999999999999
Q ss_pred eEEEEECCCCceEEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 84 RVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
++.|||+....+.... +....-..+.++.+| |.+..++|..||.|.|||+.+...+.. +.+|.+.+.||.++++|
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKDG 563 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCCC
Confidence 9999999876542221 122334677899999 999999999999999999988777655 99999999999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
..|.+|+-|++++.||++++...+... ....|.++.++|. +.++++|-+++.+.+......+
T Consensus 564 -tklWTGGlDntvRcWDlregrqlqqhd-----------F~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~----- 625 (705)
T KOG0639|consen 564 -TKLWTGGLDNTVRCWDLREGRQLQQHD-----------FSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPE----- 625 (705)
T ss_pred -ceeecCCCccceeehhhhhhhhhhhhh-----------hhhhheecccCCC-ccceeeecccCcEEEEecCCcc-----
Confidence 568999999999999999998776554 4557999999998 7899999999999988876643
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
+.....|.+.|.++.|.+.|+++++.+ |+-+..|...-+..
T Consensus 626 -----------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--------------------------- 667 (705)
T KOG0639|consen 626 -----------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------------- 667 (705)
T ss_pred -----------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc---------------------------
Confidence 344566789999999999999999887 66788898765421
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
.|+.... ..|.++.. +.|.+|+++|+.|....+|.+
T Consensus 668 -------------iFqskE~-SsVlsCDI-S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 -------------IFQSKES-SSVLSCDI-SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -------------eeecccc-Ccceeeee-ccCceEEEecCCCcceEEEEE
Confidence 1221111 13888887 999999999999988888875
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4e-27 Score=200.55 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=198.6
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc---
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE--- 137 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--- 137 (471)
.++|.|++-+|+|.+|+.|+..|.|.+|.+.+|..+..+ .+|-..|+|+.|+- ||.+|++|+.||.|.+|.+.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeecc
Confidence 578999999999999999889999999999999997777 89999999999999 999999999999999998742
Q ss_pred ----cCcceeeEeeceeeeEEEEEEccCC-CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 138 ----RGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 138 ----~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
........+..|.-+|+++...+.+ ...+++++.|.++++||+..+..+..+. .+..+.+++.+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-----------fp~si~av~lD 226 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-----------FPSSIKAVALD 226 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-----------cCCcceeEEEc
Confidence 2233445588899999999988763 2468999999999999999998887776 44578999999
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCC
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
|. +..+++|+++|.|.+.++....-. ...+..=.++++
T Consensus 227 pa-e~~~yiGt~~G~I~~~~~~~~~~~---------------------~~~v~~k~~~~~-------------------- 264 (476)
T KOG0646|consen 227 PA-ERVVYIGTEEGKIFQNLLFKLSGQ---------------------SAGVNQKGRHEE-------------------- 264 (476)
T ss_pred cc-ccEEEecCCcceEEeeehhcCCcc---------------------cccccccccccc--------------------
Confidence 98 789999999999999888654210 111110011111
Q ss_pred CCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
......+.||.+...|+|++. +-||..|++|++||.|.|||+
T Consensus 265 -------------------------------------~t~~~~~~Gh~~~~~ITcLai-s~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 265 -------------------------------------NTQINVLVGHENESAITCLAI-STDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -------------------------------------cceeeeeccccCCcceeEEEE-ecCccEEEeeCCCCCEEEEec
Confidence 234566777877445999998 999999999999999999999
Q ss_pred cCCeeeEEecCCCcceEEEEEcCCCC
Q 012064 373 KGGELIRVIEADRHVVNCIEPHPHST 398 (471)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s~~~~ 398 (471)
.+.++++++....++|+.+.+.|-.+
T Consensus 307 ~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 307 YSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred chHHHHHHHhhhccccceeEeecccc
Confidence 99999998877778999999866433
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=5.3e-26 Score=203.52 Aligned_cols=278 Identities=13% Similarity=0.148 Sum_probs=196.1
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEE-EEEeCCCeEEEEeccccCcceeeEeeceee
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
+..+++++.|+.+++||+.+++.+..+ ..+ ..+.+++|+| +++.+ ++++.++.|++||..+++.... +..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGT--LPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEe--ccCCC-
Confidence 357889999999999999999887776 444 3467899999 98876 5667789999999987765433 33333
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC-eEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i 230 (471)
.+..++|+|+++.++++++.++.+++||+++.+.+..+.. ...+.+++|+|+ +.+++++..++ .+..
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~d-g~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------GVEPEGMAVSPD-GKIVVNTSETTNMAHF 141 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------CCCcceEEECCC-CCEEEEEecCCCeEEE
Confidence 3567899999965556667789999999998766554431 123578999998 67777777664 5677
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCcccccc
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 308 (471)
||.++.+.... .. .......++|+|++++|+.++ ++.+++||+.+++....+....
T Consensus 142 ~d~~~~~~~~~--------------~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~------ 199 (300)
T TIGR03866 142 IDTKTYEIVDN--------------VL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI------ 199 (300)
T ss_pred EeCCCCeEEEE--------------EE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc------
Confidence 89876543211 00 112346789999999875443 6789999998754322211000
Q ss_pred ccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE-eeCCCeEEEEEccCCeeeEEecCCCcc
Q 012064 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHV 387 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~-g~~dg~v~iwd~~~~~~~~~~~~h~~~ 387 (471)
...+........+.| +|++++++. .+.++.+.+||+.+++.+..+. +...
T Consensus 200 ---------------------------~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~ 250 (300)
T TIGR03866 200 ---------------------------PGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR 250 (300)
T ss_pred ---------------------------cccccccCCccceEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence 000001111345777 999998654 3456789999999888776553 3457
Q ss_pred eEEEEEcCCCCEEEEe-ecCCcEEEecCCCCCCc
Q 012064 388 VNCIEPHPHSTVLASS-GIESDIKILTPNAADRA 420 (471)
Q Consensus 388 v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~ 420 (471)
+.+++|+|++++|+++ +.++.|++||+.+++..
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 9999999999998876 46899999999998863
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=186.26 Aligned_cols=297 Identities=12% Similarity=0.129 Sum_probs=199.6
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE-e
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-G 79 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s-~ 79 (471)
+.+++|+.||+.||+++.|++|+||++..-+...-.+ +.+.+ .-+.-+.++|+||-+-++. .
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~---------------~R~nv--e~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRC---------------IRQNV--EYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhH---------------hhccc--cCCCceEEEECCCcceEEEEE
Confidence 3578999999999999999999999988532221000 00111 1234578899999875554 4
Q ss_pred cCCCeEEEEECCC---CceE--------EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec
Q 012064 80 SDDRRVILWDWKT---ERVK--------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (471)
Q Consensus 80 ~~d~~i~iwd~~~---~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 148 (471)
-...++++|.+.. |... ..+...|.-.+-.+-... ++.+|++++.|..|.+|+++ ++.+.. +..
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~~--idt 226 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQS--IDT 226 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceeee--ecc
Confidence 4456899997643 2211 123345666676777666 88999999999999999997 444443 444
Q ss_pred eeeeEEEEEEccCCCcEEEEEecCCeEEEEecc---CCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
....-+..+.+|+| +++++++.--.+++|.+- .|......+ ...+.+ |...|..++|+|+ ...+++.+.|
T Consensus 227 nq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~r---vf~LkG--H~saV~~~aFsn~-S~r~vtvSkD 299 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKR---VFSLKG--HQSAVLAAAFSNS-STRAVTVSKD 299 (420)
T ss_pred ccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhh---hheecc--chhheeeeeeCCC-cceeEEEecC
Confidence 44556778999999 678999988899999863 332222111 112233 6778999999998 7899999999
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccc
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 305 (471)
|++++||..-.-...+... ..+. -+..+... .+.-..+.++|+|+.|+.+....+.+|..+.++....
T Consensus 300 G~wriwdtdVrY~~~qDpk--~Lk~-g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~-------- 367 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPK--ILKE-GSAPLHAA-GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPE-------- 367 (420)
T ss_pred CcEEEeeccceEecCCCch--Hhhc-CCcchhhc-CCCceEEEeCCCCcEEEeecCCceEEEEcccCccchh--------
Confidence 9999999864321111000 0000 00111111 2334489999999999999888999999887633221
Q ss_pred cccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
.-..|... |.+++| +++|+++++++ |..++++.
T Consensus 368 -----------------------------~e~~h~~~--Is~is~-~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 368 -----------------------------LEDIHSTT--ISSISY-SSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -----------------------------HHHhhcCc--eeeEEe-cCCCcEEeeec-ceeeeeec
Confidence 11234443 999999 99999999998 56777765
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.2e-26 Score=184.47 Aligned_cols=276 Identities=11% Similarity=0.107 Sum_probs=203.0
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
|.++.|+|.+..|++++-||++++|+....++. ..+ .|..++.+++|.+ ...+++|+
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~---------------------~~~-~~~~plL~c~F~d-~~~~~~G~ 72 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK---------------------LKF-KHGAPLLDCAFAD-ESTIVTGG 72 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhh---------------------hhe-ecCCceeeeeccC-CceEEEec
Confidence 346778898899999999999999999966544 233 4899999999987 45788999
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.||.|+.+|+.+++.. .+ ..|..+|.|+.+++ ....+++|+.|++|++||.+....... +. ....|.++....
T Consensus 73 ~dg~vr~~Dln~~~~~-~i-gth~~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~~~~~~~--~d-~~kkVy~~~v~g 145 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNED-QI-GTHDEGIRCIEYSY--EVGCVISGSWDKTIKFWDPRNKVVVGT--FD-QGKKVYCMDVSG 145 (323)
T ss_pred cCceEEEEEecCCcce-ee-ccCCCceEEEEeec--cCCeEEEcccCccEEEEeccccccccc--cc-cCceEEEEeccC
Confidence 9999999999988863 33 68999999999999 889999999999999999986443332 22 334788887764
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
+.|++|+.|..+.+||+++........... ..-.+.|+++-|. +.=+++++-||.|.+=.+...+..+
T Consensus 146 ---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~--------lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 146 ---NRLVVGTSDRKVLIYDLRNLDEPFQRRESS--------LKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred ---CEEEEeecCceEEEEEcccccchhhhcccc--------ceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHh
Confidence 358999999999999999876544222111 3446899999996 5667788999998876665542222
Q ss_pred CCCCCCCCCcCCCCcccCC--CccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 241 STDFGQPADYFCPPNLIGD--EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
.-++ ...|......+ .--+|++++|+|-...|++|+ ||.|.+||+.+.+.
T Consensus 214 skky----aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr----------------------- 266 (323)
T KOG1036|consen 214 SKKY----AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR----------------------- 266 (323)
T ss_pred hhce----eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-----------------------
Confidence 1111 01111111111 124789999999988898887 77899999987533
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~ 363 (471)
+..+..... .|.+++| +.+|..||.++.
T Consensus 267 ---------------l~q~~~~~~--SI~slsf-s~dG~~LAia~s 294 (323)
T KOG1036|consen 267 ---------------LKQLAKYET--SISSLSF-SMDGSLLAIASS 294 (323)
T ss_pred ---------------hhhccCCCC--ceEEEEe-ccCCCeEEEEec
Confidence 333433333 3889998 999999999863
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.2e-27 Score=210.09 Aligned_cols=290 Identities=16% Similarity=0.228 Sum_probs=221.0
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce----EEEeec--CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEec
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 135 (471)
....+++.+++-..++.++.. .++||.+..... ...+.. .-...+..++|... +.++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccc-hhhhheeecCCCcEEEEec
Confidence 345667778988888888774 688887754332 111100 11124557888853 7889999999999999999
Q ss_pred ccc-CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 136 LER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
... .......+..|+..++++.|++..++++++|+.||.|++||++..+....+.. ....|..+.|+|.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----------nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----------NSESIRDVKFSPG 187 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----------cchhhhceeeccC
Confidence 762 11222237889999999999999999999999999999999999988877765 4447999999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
.++.|+++...|.+++||+|.... ....+..|.++|.++.|+|++.+||+|+ |+.|+|||..+.+
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r--------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDR--------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred CCceEEEecCCceEEEeeccCchh--------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 889999999999999999997652 2345667899999999999999999999 6689999997642
Q ss_pred CCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcE-EEEee--CCCeEEEE
Q 012064 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS--DCGRIFIW 370 (471)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~-l~~g~--~dg~v~iw 370 (471)
. ....++..- . ++.++.| -|+..+ ||+++ .|-.|+||
T Consensus 254 ~------------------------------------~~~~tInTi-a--pv~rVkW-RP~~~~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 254 A------------------------------------KPKHTINTI-A--PVGRVKW-RPARSYHLATCSMVVDTSVHVW 293 (839)
T ss_pred c------------------------------------cceeEEeec-c--eeeeeee-ccCccchhhhhhccccceEEEE
Confidence 1 112222211 2 3889998 887664 55553 47899999
Q ss_pred EccCC-eeeEEecCCCcceEEEEEcC-CCCEEEEeecCCcEEEecCCCC
Q 012064 371 KKKGG-ELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 371 d~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
|+... -+..++..|...++.++|.. |...|.+++.||+|..-.++..
T Consensus 294 DvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 294 DVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99654 44578889999999999965 4558899999999887666544
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=190.80 Aligned_cols=306 Identities=18% Similarity=0.231 Sum_probs=221.8
Q ss_pred eeeEEeccccccEEEEEEcCCC--CEEEEecCCCeEEEEECCCCc----eEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
......+-|.++|++++|+|.. +++|+|+.-|+|-+||+.+.+ .+..+ ..|..+|.++.|+|. +...+++.+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~-n~s~i~ssS 254 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPA-NTSQIYSSS 254 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCC-Chhheeeec
Confidence 4456677889999999999965 588999999999999995322 22333 789999999999994 677899999
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCCcCcceeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 204 (471)
.||+|++-|++.........+......+.++.|+.+.+. ++.+..=|...+||++++.. ...+.. |..
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~l----------h~k 323 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRL----------HKK 323 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhh----------hhc
Confidence 999999999977654332223334556778889888854 56666667999999998865 333332 555
Q ss_pred eeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCc
Q 012064 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (471)
.|.+++++|....+|++++.|++.+|||++....... |.-....|...|.+..|+|.+-.|++.+ |+.
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~ 392 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE 392 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cceecccccceeeeeEEcCCCCceEeeccCCc
Confidence 8999999999999999999999999999997653221 1223345788999999999876566655 779
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee---ecCCceeEeeeeeeeCCCCcEEEE
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY---KGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
|++||...-... ..+...+ ..+..+.+.....| .|+..++++
T Consensus 393 IRv~dss~~sa~----------------------------------~~p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~v 437 (498)
T KOG4328|consen 393 IRVFDSSCISAK----------------------------------DEPLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVV 437 (498)
T ss_pred eEEeeccccccc----------------------------------CCccceeeccCcccccccchhhee-CCCccEEEE
Confidence 999997411000 0011111 11112233556667 999999999
Q ss_pred eeCCCeEEEEEccCCeeeEEecCCCc-ceEE-EEEcCCCCEEEEe-ecCCcEEEecCCC
Q 012064 361 GSDCGRIFIWKKKGGELIRVIEADRH-VVNC-IEPHPHSTVLASS-GIESDIKILTPNA 416 (471)
Q Consensus 361 g~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~-~~~s~~~~~l~s~-~~dg~i~iw~~~~ 416 (471)
|..-..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++| +..|.|+||.-+.
T Consensus 438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 99999999999988888887755443 4443 5899998855555 5678899987543
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.5e-25 Score=177.93 Aligned_cols=300 Identities=18% Similarity=0.245 Sum_probs=210.9
Q ss_pred CCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeee---eEEeccccccEEEEEEcC-CCCEEEEecCCC
Q 012064 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGI---YAKLDKHRGCVNTVSFNT-DGDILISGSDDR 83 (471)
Q Consensus 8 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~V~~~~~s~-~g~~l~s~~~d~ 83 (471)
-.|+++++|+.||.|.+||++...... .++...+-.. ...-.+|.-.|..+.|-| |...+.+++.|.
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e---------~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYE---------ASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchh---------hccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 358999999999999999998543221 0011111111 122357899999999999 556888999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCC-CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
+++|||..+-+....| .-.+.|++-+++|..- -.++++|..+-.|++.|+.++..... +.+|.+.|.++.|+|..
T Consensus 125 tlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSS 200 (397)
T ss_pred eEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--eccccCceEEEEeccCc
Confidence 9999999998887777 4577899999998543 34566777788999999999887665 99999999999999999
Q ss_pred CcEEEEEecCCeEEEEeccCC-ccceeeeeccc---CCcC-cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 163 PHVFYTCGEDGLVQHFDLRTG-AATELFTCRPI---DDRR-NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
..+|++|+.||.|++||++.. .+...+..+.. +..+ ...+.+.++.++|..+ +.++++.+.|..+++|+..+++
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCc
Confidence 999999999999999999865 33333332221 1111 2237778999999999 7899999999999999998876
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
.... .+++. .+....+ -.+. +. +.+. .++..-.++.+.++++-.+
T Consensus 280 ntl~-~~g~~------~~n~~~~-~~~~-~~-~~~s~vfv~~p~~~~lall~~~sg------------------------ 325 (397)
T KOG4283|consen 280 NTLR-EFGPI------IHNQTTS-FAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEG------------------------ 325 (397)
T ss_pred cccc-ccccc------ccccccc-ceEE-Ee-ecccceEEEEecCCeEEEEEccCc------------------------
Confidence 3211 00000 0000000 0111 22 2222 2333333567777776553
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
..++.+.+|-.. +.+..+ .|+=+...+|+.|+.|..|-.
T Consensus 326 --------------s~ir~l~~h~k~--i~c~~~-~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 326 --------------SFVRRLSTHLKR--INCAAY-RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred --------------eEEEeeecccce--eeEEee-cCchhhhhccccCCccccccc
Confidence 445666677443 777777 999999999999999999976
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=197.75 Aligned_cols=334 Identities=17% Similarity=0.185 Sum_probs=221.5
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
....||.+.+||.|.++|.+.-.... .-........|.+.|..+.|-|....|++++.|.++++|
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 45669999999999999987322110 001124566899999999999976789999999999999
Q ss_pred ECCCCceEEE-eecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-------------------------e
Q 012064 89 DWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-------------------------E 142 (471)
Q Consensus 89 d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~ 142 (471)
|++.++.... +..+|.+.|.+++|.|. |...|++|+.||.|.|||++-.... .
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 9998887655 23799999999999994 6778899999999999999643310 0
Q ss_pred eeEeeceeeeEEE---EEEccCCCcEEEEEec-CCeEEEEeccCCccceeeeecccCCcCcc-eeeeeeEEEEEcCCCCc
Q 012064 143 TKLLGKHQGRAHK---LAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNAN 217 (471)
Q Consensus 143 ~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ 217 (471)
......+...|.+ +.+..|. ..|++++. |+.|++||++..................+ .....+.++..+.. |.
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-Gt 284 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-GT 284 (720)
T ss_pred ccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-CC
Confidence 0001123333433 4444555 45777776 99999999998766544433222222221 12446788888887 45
Q ss_pred eEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCc--cceEEEEEcCCCCeEEEee-CCcEEEEecCCCCC
Q 012064 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (471)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~ 294 (471)
+|++.+.|+.|++|++...... +.....++. .....-..+|++.++++++ ++..++|.+.+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~s-------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~-- 349 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSIS-------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP-- 349 (720)
T ss_pred eEEEEecCCcEEEEeccccCcC-------------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc--
Confidence 6666666999999999876532 122222211 1223345689999999998 668999999874
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC-CCcEEEEeeCCCeEEEEEcc
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~g~~l~~g~~dg~v~iwd~~ 373 (471)
......+.||... |++++| .| .-.-++++++|..++||++.
T Consensus 350 -----------------------------------e~~~~~l~Ght~e--Vt~V~w-~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 350 -----------------------------------EAPPALLLGHTRE--VTTVRW-LPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -----------------------------------cCChhhhhCcceE--EEEEee-ccccCCCceeeccCcceEEEecc
Confidence 3345667788776 888888 44 33346666999999999996
Q ss_pred CCe--------------eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 374 GGE--------------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 374 ~~~--------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
.+- ....+++|.-.+..+.++-.+.+.... .+..++|...
T Consensus 392 ~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP 445 (720)
T KOG0321|consen 392 NGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP 445 (720)
T ss_pred Cchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc
Confidence 542 123345665555555554433322222 3445555443
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=209.09 Aligned_cols=286 Identities=13% Similarity=0.220 Sum_probs=211.9
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc---cccEEEEEEcC-CCCEEEEe
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH---RGCVNTVSFNT-DGDILISG 79 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~s~-~g~~l~s~ 79 (471)
++-+++...++.++ ...++|+.++...... ++...+++. .-.+..+.|+. +.++|||+
T Consensus 45 Is~nr~~~qiv~AG-rs~lklyai~~~~~~~-----------------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~ 106 (839)
T KOG0269|consen 45 ISVNRDINQIVVAG-RSLLKLYAINPNDFSE-----------------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATC 106 (839)
T ss_pred EeecCCcceeEEec-ccceeeEeeCcccCCc-----------------ceeeecccccceeeehhhcccccchhhhheee
Confidence 34455656666665 4467777776433221 111111111 12344566764 46899999
Q ss_pred cCCCeEEEEECCC---CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 80 SDDRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 80 ~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
+..|.|.+||+.. .+.+..+ ..|+..++++.|++. ...+|++|+.||.|++||++..+.... +.+....|.++
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~~S~~t--~~~nSESiRDV 182 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSKKSKST--FRSNSESIRDV 182 (839)
T ss_pred cCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccC-CccEEEecCCCceEEEEeeeccccccc--ccccchhhhce
Confidence 9999999999987 3333344 789999999999985 778999999999999999998887766 66778899999
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccCCccc-eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
.|+|..++.|+++.+.|.+++||++....- ..+.. |.++|.|+.|+|+ +.+||+|+.|+.|+|||...
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A----------H~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA----------HNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHHhhc----------ccCceEEEeecCC-CceeeecCCCccEEEEeccC
Confidence 999988889999999999999999986543 22322 7789999999996 89999999999999999986
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe-EEEee---CCcEEEEecCCCCCCCCCCCCCccccccccc
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (471)
.+... . ..-..-.++.++.|-|+..+ |++++ +-.|++||++..
T Consensus 252 ~~~~~-------------~-~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------- 298 (839)
T KOG0269|consen 252 SRAKP-------------K-HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------- 298 (839)
T ss_pred CCccc-------------e-eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc-------------------
Confidence 54211 1 11122567899999998764 66666 337999999864
Q ss_pred cCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
..+...+..|... ++.++|-+.|-..+.+++.||.|..-..+++
T Consensus 299 ------------------YIP~~t~~eH~~~--vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 299 ------------------YIPYATFLEHTDS--VTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ------------------cccceeeeccCcc--ccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 3445778888887 8889984446668889999999876555544
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.3e-25 Score=200.25 Aligned_cols=262 Identities=17% Similarity=0.244 Sum_probs=208.1
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEE-EEEcC-CCCEEEEecCCCeEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNT-VSFNT-DGDILISGSDDRRVI 86 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-~~~s~-~g~~l~s~~~d~~i~ 86 (471)
++..++++++||++++|+-..++.+. .+.+.+|.+.|.+ +++-+ ++-.|++|+.|.+|.
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~-------------------~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLE-------------------THAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred CCeEEeecCCCCceeeeeccCccccc-------------------ceecccCcceeeccceeccccCcceEeecccceEE
Confidence 45579999999999999987666652 2557788888888 88875 555699999999999
Q ss_pred EEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEE
Q 012064 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (471)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (471)
+|.....++...+ .+|+..|.++.... ++. +++|+.|.++++|...+ .... +.+|+..|++++..|++ .+
T Consensus 85 v~~~~~~~P~~~L-kgH~snVC~ls~~~--~~~-~iSgSWD~TakvW~~~~--l~~~--l~gH~asVWAv~~l~e~--~~ 154 (745)
T KOG0301|consen 85 VFKLSQAEPLYTL-KGHKSNVCSLSIGE--DGT-LISGSWDSTAKVWRIGE--LVYS--LQGHTASVWAVASLPEN--TY 154 (745)
T ss_pred EEecCCCCchhhh-hccccceeeeecCC--cCc-eEecccccceEEecchh--hhcc--cCCcchheeeeeecCCC--cE
Confidence 9999999987776 89999999998775 555 99999999999998643 3333 88999999999999987 48
Q ss_pred EEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCC
Q 012064 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (471)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (471)
++|+.|.+|++|.- ++..+.+.. |...|+.+++-|+ ..|++++.||.|++|++....
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~g----------HtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~ge~--------- 211 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSG----------HTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLDGEV--------- 211 (745)
T ss_pred EeccCcceeeeccC--Cchhhhhcc----------chhheeeeEEecC--CCeEeecCCceEEEEeccCce---------
Confidence 99999999999974 666666664 6668999999997 368899999999999995432
Q ss_pred CCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCC
Q 012064 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
.....+|...+.++...+++..+++++ |+++++|+...
T Consensus 212 -------l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e---------------------------------- 250 (745)
T KOG0301|consen 212 -------LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE---------------------------------- 250 (745)
T ss_pred -------eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc----------------------------------
Confidence 234567889999999777777888777 66999999752
Q ss_pred CcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
+.+.+.-... .++++.+ -++|. +++|+.||.||||...
T Consensus 251 ------~~q~I~lPtt--siWsa~~-L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 251 ------CVQVITLPTT--SIWSAKV-LLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ------eEEEEecCcc--ceEEEEE-eeCCC-EEEeccCceEEEEEec
Confidence 2222222221 2788887 56776 6678889999999764
No 141
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=3.6e-25 Score=180.12 Aligned_cols=288 Identities=20% Similarity=0.304 Sum_probs=212.8
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-------e-----EEEeecCCCcceeEEEEecC-----CCCeEEEE
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-------V-----KLSFHSGHNDNVFQAKIMPF-----TDDRSIVT 123 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-------~-----~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s 123 (471)
......+.|||||..|++-+.|..+.+|++...- . ...+.-.....|+..+|-+. ++..++++
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 3456678999999999999999999999984311 0 11111123456777777631 26788999
Q ss_pred EeCCCeEEEEeccccCcceeeEeeceeee---EEEEEEccCCCcEEEEEecCCeEEEEec-cCCccceeeeecccCCcCc
Q 012064 124 CAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPHVFYTCGEDGLVQHFDL-RTGAATELFTCRPIDDRRN 199 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~ 199 (471)
.+.+.-|++||.-+++....-....|.+. ..+++|+|||.+ |+ ++....|++||+ +.+..-..+...... .
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lf-aGykrcirvFdt~RpGr~c~vy~t~~~~---k 203 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LF-AGYKRCIRVFDTSRPGRDCPVYTTVTKG---K 203 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Ee-ecccceEEEeeccCCCCCCcchhhhhcc---c
Confidence 99999999999999887665333345444 468999999964 33 567789999999 555443322211110 1
Q ss_pred ceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe
Q 012064 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
....+-+.+++|+|.+...+++|+....+-||.-..+. |..+..+|.+.|+.++|.++|+.|.+|
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------PLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------------ceeeecccCCCeeeEEeccCcCeeccc
Confidence 11345688999999988899999998888888776654 355667899999999999999999999
Q ss_pred e--CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee-eCCCCc
Q 012064 280 N--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCE 356 (471)
Q Consensus 280 ~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~g~ 356 (471)
+ ++.|..||++.. ..++..+..|... +-..+.| ..|+|+
T Consensus 269 aRk~dkIl~WDiR~~-------------------------------------~~pv~~L~rhv~~-TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYS-------------------------------------RDPVYALERHVGD-TNQRILFDLDPKGE 310 (406)
T ss_pred ccCCCeEEEEeehhc-------------------------------------cchhhhhhhhccC-ccceEEEecCCCCc
Confidence 8 668999999864 2334444555431 1122333 378999
Q ss_pred EEEEeeCCCeEEEEEccC-CeeeEEecCCCcceEEEEEcCCCCEEEEeecC
Q 012064 357 YVVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (471)
Q Consensus 357 ~l~~g~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 406 (471)
+|++|+.||.|++||+++ |..+..+..|+..++.++++|.-.++|+++..
T Consensus 311 ~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999999999999999988 77788888999999999999998899988754
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.6e-25 Score=193.64 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=216.6
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
.+...+.||++.|.|+...|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.++...|+++-... +.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGEC-VL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCc-eE
Confidence 4446778999999999999999999999999999999999999999883 56799999999954444555544332 33
Q ss_pred EEec---------------------------------cccCcce--eeEeeceeeeEEEEEEccCCCcEEEEEec---CC
Q 012064 132 HAQI---------------------------------LERGGVE--TKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DG 173 (471)
Q Consensus 132 iwd~---------------------------------~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg 173 (471)
|-+. ....... ....-.|...|..+.|+..|.+ |++... ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcc
Confidence 3322 2111111 1123457889999999999964 555433 35
Q ss_pred eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCC
Q 012064 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (471)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (471)
.|.|.++........+.. ..+.+.++.|+|. ..+|++++. ..|++||+....+...
T Consensus 547 ~VliHQLSK~~sQ~PF~k----------skG~vq~v~FHPs-~p~lfVaTq-~~vRiYdL~kqelvKk------------ 602 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRK----------SKGLVQRVKFHPS-KPYLFVATQ-RSVRIYDLSKQELVKK------------ 602 (733)
T ss_pred eEEEEecccccccCchhh----------cCCceeEEEecCC-CceEEEEec-cceEEEehhHHHHHHH------------
Confidence 788998877665544432 3446899999998 456666554 5799999987654322
Q ss_pred CcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccC
Q 012064 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (471)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (471)
+.. ....|..++.+|.|.-|+.++ ++.+..||+.-. ..+
T Consensus 603 --L~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldls-------------------------------------skP 642 (733)
T KOG0650|consen 603 --LLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-------------------------------------SKP 642 (733)
T ss_pred --Hhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-------------------------------------cch
Confidence 222 356799999999998777777 678999998764 345
Q ss_pred CeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc------CC---eeeEEecCCCcc----eEEEEEcCCCCE
Q 012064 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK------GG---ELIRVIEADRHV----VNCIEPHPHSTV 399 (471)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~------~~---~~~~~~~~h~~~----v~~~~~s~~~~~ 399 (471)
.+.+.-|... +++++| ++.-.++++|+.||++.||.-. .. -++..+++|... |....|+|...+
T Consensus 643 yk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 643 YKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred hHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 5667777776 899998 8999999999999999998531 11 345778888765 899999999999
Q ss_pred EEEeecCCcEEEe
Q 012064 400 LASSGIESDIKIL 412 (471)
Q Consensus 400 l~s~~~dg~i~iw 412 (471)
|++++.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
No 143
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.8e-25 Score=180.12 Aligned_cols=288 Identities=15% Similarity=0.233 Sum_probs=210.1
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
...|++.|.+||+|+.||.|-|||..|-..- +.+.+|-.+|++++||+||+.|+|+|.|
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---------------------r~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---------------------RMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccchh---------------------hhhhccccceeEEEecCCCCEeeeecCC
Confidence 4679999999999999999999999965543 7889999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece-----eeeEEEEE
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-----QGRAHKLA 157 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~ 157 (471)
..|.+||+..|.+++++ ...++|+.+.|+|. +.+..+++-.+..-.+-++..+.... +... +....+..
T Consensus 87 ~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~-k~n~~va~~~~~sp~vi~~s~~~h~~---Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPR-KRNKCVATIMEESPVVIDFSDPKHSV---LPKDDDGDLNSSASHGV 160 (405)
T ss_pred ceeEEEeccCCCceeEE--EccCccceeeeccc-cCCeEEEEEecCCcEEEEecCCceee---ccCCCcccccccccccc
Confidence 99999999999998887 46789999999995 33344444444445555554422211 1111 11122335
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
|.+.| +.+++|...|.+.++|.++-+++..++.. ....|..+.++.. +..|+.-+.|+.||.|+++.--
T Consensus 161 fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rit---------s~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 161 FDRRG-KYIITGTSKGKLLVYDAETLECVASFRIT---------SVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred ccCCC-CEEEEecCcceEEEEecchheeeeeeeec---------hheeeeEEEEecc-CcEEEEecCCceEEEEehhhhc
Confidence 78888 57899999999999999999888777653 2246888999887 7899999999999999987432
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC--cEEEEecCCCCCCCCCCCCCccccccccccCCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (471)
..+... .+........+. .+.+-.+++|+.+|.|++.++.. .+++|....|
T Consensus 230 ~~~r~~--e~e~~~K~qDvV--Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G----------------------- 282 (405)
T KOG1273|consen 230 DEGRDG--EVEPEHKLQDVV--NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG----------------------- 282 (405)
T ss_pred ccCccC--CcChhHHHHHHH--hhhhhhheeecCCccEEEeccccceeEEEEecCCc-----------------------
Confidence 111100 000000000001 12344678999999999988844 6999998774
Q ss_pred CCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
..++.+.|.++. ....+.| +|-...+++- ..|.|++|...
T Consensus 283 ---------------sLVKILhG~kgE-~l~DV~w-hp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 283 ---------------SLVKILHGTKGE-ELLDVNW-HPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ---------------ceeeeecCCchh-heeeccc-ccceeeeeec-cCCceEEEEee
Confidence 556777777643 3667888 8877777777 67999999864
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-24 Score=175.74 Aligned_cols=273 Identities=15% Similarity=0.201 Sum_probs=197.0
Q ss_pred EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC--cceeeEeeceeeeEEEEEEc-cCCCcEEEEEecCC
Q 012064 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRAHKLAIE-PGSPHVFYTCGEDG 173 (471)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg 173 (471)
..+..+|..-|.++.|.+ .|+.+++|+.|++++|||.+... ...+.....|.+.|..+.|. |.-.+++++++.|+
T Consensus 6 ~pi~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 345578999999999999 99999999999999999975443 34445578899999999995 44447899999999
Q ss_pred eEEEEeccCCccc----eeeeecccCCcCcceeeeeeEEEEEcCC-CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCC
Q 012064 174 LVQHFDLRTGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (471)
Q Consensus 174 ~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (471)
++.||.-...... +=..+....+ ....|+.+.|.|. -|-.+++++.||.+|||+....-......+....
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 9999975211110 0001111111 3457999999996 2567899999999999997654322222111110
Q ss_pred CcCCCCcccCCCccceEEEEEcCC---CCeEEEeeCC------cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 249 DYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
. ........+..+-.|+.|+|. ..+|+.++++ .++||....+...
T Consensus 159 ~--~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK------------------------ 212 (361)
T KOG2445|consen 159 Q--NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK------------------------ 212 (361)
T ss_pred h--hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce------------------------
Confidence 0 011122234566789999974 3578888876 7889987654211
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC----cEEEEeeCCCeEEEEEccC--------------------C
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKG--------------------G 375 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g----~~l~~g~~dg~v~iwd~~~--------------------~ 375 (471)
...+..+.+|..+ |+.++| .|+- ..||+++.|| |+||++.. -
T Consensus 213 ----------w~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 213 ----------WLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ----------eeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 2334566688887 999999 8863 4789999999 99999862 1
Q ss_pred eeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 376 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+.+..+..|.+.|..+.|+-.|..|++.|.||+|++|...-
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 34566788999999999999999999999999999998753
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3e-25 Score=189.19 Aligned_cols=292 Identities=15% Similarity=0.194 Sum_probs=214.4
Q ss_pred EecCC-CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 78 SGSDD-RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 78 s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
+++.| ..+.+||+.+|....++..+....-.++... ++.+++++.. ...+.+|.+........ ..--.+++.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q--~~v~Pg~v~a 86 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQ--YIVLPGPVHA 86 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhh--hcccccceee
Confidence 34444 4599999999999888833212222222222 4567776654 34788999865544331 3335678999
Q ss_pred EEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
++-+|.| ++++.|+..|.|++|.+.+|..+..+.. |...|+++.|+-| +.+|++|+.||.|.+|++-.
T Consensus 87 l~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~a----------HYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 87 LASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSA----------HYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred eecCCCc-eEEEeecccCcEEEEEeccccHHHHHHh----------hccceeEEEEeCC-CcEEEecCCCccEEEEEEEe
Confidence 9999999 6777777999999999999998877754 6678999999998 78999999999999999864
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC--CeEEEee-CCcEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
.--.. +.....|...+.+|.-+|+.+...+.| .+|++++ |.++++||+..+..+
T Consensus 155 lv~a~------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----------------- 211 (476)
T KOG0646|consen 155 LVSAD------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----------------- 211 (476)
T ss_pred ecccc------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee-----------------
Confidence 32110 111234567788899999999988764 4677877 558999999876322
Q ss_pred CCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC----------------Ce
Q 012064 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG----------------GE 376 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~----------------~~ 376 (471)
..+.-. ..+.+++. +|.++.+++|+++|.|.+.++.. +.
T Consensus 212 ---------------------lti~fp---~si~av~l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 212 ---------------------LTITFP---SSIKAVAL-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred ---------------------EEEecC---CcceeEEE-cccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 222211 13788888 99999999999999999988643 23
Q ss_pred eeEEecCCCc--ceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccCc-chheeehhhH
Q 012064 377 LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-NIEQAMMMTM 434 (471)
Q Consensus 377 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~ 434 (471)
.+..+.+|.+ .|++++.+-||.+|++|+.||.++|||+.+.++.+... ..+.+..+.+
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 4566788988 99999999999999999999999999999987754433 3344444444
No 146
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.3e-25 Score=183.30 Aligned_cols=305 Identities=20% Similarity=0.256 Sum_probs=225.5
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCC------CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 128 (471)
+.+.+|.+.|.++.||.++++||+|+.|..+++|+++. .+++......|...|.|++|.. .+..+++|..++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCcc
Confidence 45678999999999999999999999999999999853 3444444456779999999998 889999999999
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
+|..-|+++.+.+....-....+.|+.+..+|.. +.|++.+.++.+.+||.+.......+.+... .......
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-------~~~~F~t 199 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-------SGKNFYT 199 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecC-------CCcccee
Confidence 9999999887766532222233489999999997 6899999999999999998763333333221 3345788
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF 287 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~ 287 (471)
+.|+|..+.+|++.+..+.+-+||.+..+. ++.......-+......-.++.|+|+|..+.+...+ .-.+|
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--------~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~ 271 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQAR--------PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF 271 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccc--------hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence 999999889999999999999999987541 100000001111112334678899999888777655 56677
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee----cCCceeEeeeeeeeCCCCcEEEEeeC
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK----GHRNCVTVKGVNFFGPKCEYVVSGSD 363 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~s~~g~~l~~g~~ 363 (471)
|+-+..+. +.++. |..+..++.+++| - +..-+++|+.
T Consensus 272 D~~S~R~~-------------------------------------V~k~D~N~~GY~N~~T~KS~~F-~-~D~~v~tGSD 312 (609)
T KOG4227|consen 272 DFISQRCF-------------------------------------VLKSDHNPNGYCNIKTIKSMTF-I-DDYTVATGSD 312 (609)
T ss_pred eeecccce-------------------------------------eEeccCCCCcceeeeeeeeeee-e-cceeeeccCc
Confidence 77653211 11111 2333345778888 4 3445999999
Q ss_pred CCeEEEEEccC-----C------------------eeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 364 CGRIFIWKKKG-----G------------------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 364 dg~v~iwd~~~-----~------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+-.|++|.+.. | +.+..+++|...++.+.|+|...+|++.+-.+.++||....
T Consensus 313 ~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 313 HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 99999998732 1 23356899999999999999999999999999999998753
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=2.3e-24 Score=180.71 Aligned_cols=328 Identities=20% Similarity=0.259 Sum_probs=218.3
Q ss_pred CCCCCCc-EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 5 SNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 5 ~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
.|.++.. ++|+|+.|..|+||.++.++.-. ..........|..|...|+++.|+|+|+.||+|+.+|
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCC------------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 3444444 89999999999999999665431 1246667788999999999999999999999999999
Q ss_pred eEEEEECC--------C-----C--ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec
Q 012064 84 RVILWDWK--------T-----E--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (471)
Q Consensus 84 ~i~iwd~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 148 (471)
.|.+|... + . -.+.....+|...|+.++|+| ++.++++++.|..+++||+..+..... +..
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~d 163 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAI--LDD 163 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEee--ccc
Confidence 99999765 2 1 123444578999999999999 999999999999999999988887765 889
Q ss_pred eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeE
Q 012064 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (471)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (471)
|...+..++|.|-++ .+++-+.|...+.+++...+....... .....-++.+. .....
T Consensus 164 h~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~------------~~m~~~~~~~~---------e~~s~ 221 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGL------------DIMPAKAFNER---------EGKST 221 (434)
T ss_pred cccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeee------------eEeeecccCCC---------Cccee
Confidence 999999999999984 678888888777776655443332210 01111222221 22234
Q ss_pred EEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-----CCc-----EEEEecCCCCCCC-C
Q 012064 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-----DEF-----IYLFTQDMGLGPN-P 297 (471)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~~~-----i~i~d~~~~~~~~-~ 297 (471)
++|.-++.+ .-...++|+|+|.+|++.+ .+. .++|+-...+.+. .
T Consensus 222 rLfhDeTlk------------------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~ 277 (434)
T KOG1009|consen 222 RLFHDETLK------------------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR 277 (434)
T ss_pred eeeecCchh------------------------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence 455444432 3356688999999888653 122 3444432111100 0
Q ss_pred CCCCCccccccccccCCCCCCccCCCCCCcccccCCe--eeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
++... .. .+++ +-+.. .+..... ....|.-|-+-.+|.++ ...|+|||.++.
T Consensus 278 lp~~~--k~-----------~lav--------r~~pVy~elrp~~~----~~~~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 278 LPSPK--KP-----------ALAV--------RFSPVYYELRPLSS----EKFLFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred cCCCC--cc-----------eEEE--------EeeeeEEEeccccc----cccccccccceEEEEee-cceEEEeccccc
Confidence 00000 00 0000 00000 1111100 00011123344555565 458999999888
Q ss_pred eeeEEec-CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 376 ELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 376 ~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
+++.... -|-..++.++|++||..|+..|.||...+-.++..++.
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 8776654 48889999999999999999999999888777776654
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=197.86 Aligned_cols=244 Identities=14% Similarity=0.212 Sum_probs=193.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccC-ccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELG-QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+.|.++|..|++++.||.|++|+...- +.+ ..+.-|...|.+++.. +.+|++|+.
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P---------------------~ti~~~g~~v~~ia~~--s~~f~~~s~ 74 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEP---------------------ETIDISGELVSSIACY--SNHFLTGSE 74 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCC---------------------chhhccCceeEEEeec--ccceEEeec
Confidence 4678899999999999999999998754 333 2333477888888764 558999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
+++|.+|.+.+++. ..++...+-++.+++|+- +|++++.|+.|-.|++.++.+...... +.+|..+|.++.|+|.
T Consensus 75 ~~tv~~y~fps~~~-~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~--lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEE-DTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKV--LRGHDAPVLQLSYDPK 149 (933)
T ss_pred cceEEEeeCCCCCc-cceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchhee--ecccCCceeeeeEcCC
Confidence 99999999998876 333355677999999999 999999999999999999988776654 8999999999999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
+ .+|++.+-||.+++||+.++.....+........ ......+..++|+|+++ .++....|+.|++|+....+....
T Consensus 150 ~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~--~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 150 G-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE--FILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred C-CEEEEEecCceEEEEEcccchhhhhcccCCcccc--ccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceehee
Confidence 9 6899999999999999999888776654332211 11234577899999965 555567789999999988764322
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
+ ....+...+..++|+|+|+|||++. ++.|.+||.++
T Consensus 226 L-------------r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 226 L-------------RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred e-------------cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 1 1122334499999999999999998 88999999875
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=8.3e-25 Score=178.40 Aligned_cols=320 Identities=11% Similarity=0.196 Sum_probs=225.8
Q ss_pred eccccccEEEEEEcC-----CCCEEEEecCCCeEEEEECCCCc---eEEEeec-CCCcceeEEEEecCC--CCeEEEEEe
Q 012064 57 LDKHRGCVNTVSFNT-----DGDILISGSDDRRVILWDWKTER---VKLSFHS-GHNDNVFQAKIMPFT--DDRSIVTCA 125 (471)
Q Consensus 57 l~~h~~~V~~~~~s~-----~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-~~~~~v~~~~~~~~~--~~~~l~s~~ 125 (471)
...|..+|..++|++ +-..+|++|.+ .+.+|...... .++.+.. .|....+.++|+--. .+.+++.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 347889999999985 23577787775 68888876433 2333332 377788888997621 145788999
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.-|.|+|.|+.+++.... +.+|...|+.+.+.|+.++++++++.|..|++|++++..++..+...+. |...
T Consensus 113 ~~GvIrVid~~~~~~~~~--~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg-------Hrde 183 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKN--YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG-------HRDE 183 (385)
T ss_pred ceeEEEEEecchhhhccc--eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc-------ccCc
Confidence 999999999988877655 8999999999999999999999999999999999999999988875443 6668
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCC-------------CCCCcCCCCcccCCCccceEEEEEcCC
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG-------------QPADYFCPPNLIGDEQVGITGLAFSDQ 272 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (471)
|.++.|+++ +.++++++.|..+++|++...+....+... .+...+........|...|.|+.|--
T Consensus 184 VLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g- 261 (385)
T KOG1034|consen 184 VLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG- 261 (385)
T ss_pred EEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-
Confidence 999999999 679999999999999999855433221111 11111111113344667777777764
Q ss_pred CCeEEEee-CCcEEEEecCC-CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee
Q 012064 273 SELLVSYN-DEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (471)
Q Consensus 273 ~~~l~~~~-~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (471)
.++++-+ ++.|..|.... .+...... .+.. .......+.-..........+|
T Consensus 262 -d~ilSkscenaI~~w~pgkl~e~~~~vk-p~es------------------------~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 262 -DFILSKSCENAIVCWKPGKLEESIHNVK-PPES------------------------ATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred -hheeecccCceEEEEecchhhhhhhccC-CCcc------------------------ceeeeeEeccCccceEEEEEee
Confidence 5777766 77899998632 11100000 0000 0111223333333322344455
Q ss_pred eCCCCcEEEEeeCCCeEEEEEccCCeee--EEecC--CCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 351 FGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 351 ~s~~g~~l~~g~~dg~v~iwd~~~~~~~--~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+|-++.||.|...|.|++||++..++. .++.. ....|...+|+.|+..|+..++|++|.-||.-
T Consensus 316 -d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 316 -DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 888999999999999999999877653 22222 23479999999999999999999999999864
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.7e-24 Score=170.70 Aligned_cols=284 Identities=15% Similarity=0.196 Sum_probs=195.3
Q ss_pred ccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEE---EeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL---SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 58 ~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
.+|.+-|.++.|.+.|+.+|+|+.|++++|||..+..... .-.+.|.+.|..+.|.+..-|+.+++|+.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999975443222 2237899999999998866799999999999999997
Q ss_pred ccc-------cCcceeeEeeceeeeEEEEEEccCCC-cEEEEEecCCeEEEEeccCCccceeeeecccCC---cCcceee
Q 012064 135 ILE-------RGGVETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMTV 203 (471)
Q Consensus 135 ~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~ 203 (471)
-.. .+.+....+......|+++.|.|... -.+++++.||.+|||+................. .+.-.+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 12234445666778899999998531 457899999999999876543332222110000 0001134
Q ss_pred eeeEEEEEcCC--CCceEEEEeCC-----CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC---
Q 012064 204 VNLNAIAIDPR--NANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--- 273 (471)
Q Consensus 204 ~~v~~~~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 273 (471)
.+..|+.|+|. ...+|++|+.+ +.++||....... .........++..+|+.++|.|+-
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----------Kw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----------KWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----------eeeeehhcCCCCCcceeeeeccccCCc
Confidence 46789999975 24578888766 4688887765421 111123344788999999999963
Q ss_pred -CeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeC
Q 012064 274 -ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (471)
Q Consensus 274 -~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 352 (471)
.+||+++.+.|+||.+.............. ......-....+..+.+|... +..+.| +
T Consensus 239 y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~------------------~~~~~~l~v~~vs~~~~H~~~--VWrv~w-N 297 (361)
T KOG2445|consen 239 YHLLAVATKDGVRIFKVKVARSAIEEEEVLA------------------PDLMTDLPVEKVSELDDHNGE--VWRVRW-N 297 (361)
T ss_pred eeeEEEeecCcEEEEEEeeccchhhhhcccC------------------CCCccccceEEeeeccCCCCc--eEEEEE-e
Confidence 367888855599999975321111000000 000000113345567788876 999999 8
Q ss_pred CCCcEEEEeeCCCeEEEEEcc
Q 012064 353 PKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 353 ~~g~~l~~g~~dg~v~iwd~~ 373 (471)
--|..|++.+.||.||+|...
T Consensus 298 mtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeEEeecCCCceeeehhhh
Confidence 999999999999999999753
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.9e-26 Score=205.35 Aligned_cols=255 Identities=18% Similarity=0.306 Sum_probs=213.0
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~ 90 (471)
-++..+..+-.+++|+.. .+-.|...|.|+..-..++.+++|+.|..+-+|.+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~---------------------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i 57 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR---------------------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAI 57 (825)
T ss_pred cccceeeeeeccccccch---------------------------hhhhhhhhhceeeeeccceeeccCCCceeeccccc
Confidence 345555566667777765 45579999999998778899999999999999999
Q ss_pred CCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe
Q 012064 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
.....+..+ .+|..+|.++.|++ +..+|++|+.+|+|++||++..+.+.. +.+|...+..+.|+|-+ .+++.++
T Consensus 58 ~kp~~i~S~-~~hespIeSl~f~~--~E~LlaagsasgtiK~wDleeAk~vrt--Ltgh~~~~~sv~f~P~~-~~~a~gS 131 (825)
T KOG0267|consen 58 GKPNAITSL-TGHESPIESLTFDT--SERLLAAGSASGTIKVWDLEEAKIVRT--LTGHLLNITSVDFHPYG-EFFASGS 131 (825)
T ss_pred cCCchhhee-eccCCcceeeecCc--chhhhcccccCCceeeeehhhhhhhhh--hhccccCcceeeeccce-EEecccc
Confidence 887777776 79999999999999 999999999999999999998887765 89999999999999999 4679999
Q ss_pred cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCc
Q 012064 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (471)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (471)
.|..+++||.+...+...+.. |...+..+.|+|+ |.+++.+++|..+++||+..+++
T Consensus 132 tdtd~~iwD~Rk~Gc~~~~~s----------~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~------------ 188 (825)
T KOG0267|consen 132 TDTDLKIWDIRKKGCSHTYKS----------HTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKL------------ 188 (825)
T ss_pred ccccceehhhhccCceeeecC----------CcceeEEEeecCC-CceeeccCCcceeeeeccccccc------------
Confidence 999999999998777776654 4446788899998 68889888888899998876652
Q ss_pred CCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccc
Q 012064 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (471)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (471)
T Consensus 189 -------------------------------------------------------------------------------- 188 (825)
T KOG0267|consen 189 -------------------------------------------------------------------------------- 188 (825)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecC
Q 012064 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (471)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 406 (471)
...|.+|... +..+.| +|..-++++|+.|++|++||+++-+.+...+.....|.+.+|+|++..+++|..+
T Consensus 189 --~~ef~~~e~~--v~sle~-hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 189 --SKEFKSHEGK--VQSLEF-HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred --cccccccccc--cccccc-CchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 2233444444 666666 8888889999999999999999999888888888899999999999999888654
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=9.4e-24 Score=186.82 Aligned_cols=201 Identities=17% Similarity=0.213 Sum_probs=138.2
Q ss_pred CCCCCCC-CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeee-eeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 2 DDASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
.|..|+| ...+||+|+.|..++||.+..|.-. .+ .....+.+..-.|-|+.|+|...-|+..
T Consensus 83 tDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q----------------~LSape~~~g~~~~~vE~l~fHpTaDgil~s 146 (1012)
T KOG1445|consen 83 TDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ----------------KLSAPEIDVGGGNVIVECLRFHPTADGILAS 146 (1012)
T ss_pred eccCccccchhhhhcccCCCeeEEEecCCCccc----------------ccCCcceeecCCceEEEEeecccCcCceEEe
Confidence 4556666 4678999999999999999844322 11 1123344556788999999976555555
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc-CcceeeEeeceeee-EEEEE
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGR-AHKLA 157 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~-v~~~~ 157 (471)
+..|++.|||+.+++.+..+ .+|...|.+..|+. ||..|++++.|..|+|||.+.. +.++. ..+|.+. -..+.
T Consensus 147 ~a~g~v~i~D~stqk~~~el-~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~--te~H~~~rdsRv~ 221 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVEL-SGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQT--TEGHGGMRDSRVL 221 (1012)
T ss_pred ccCceEEEEEcccCceeecc-cCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCcccc--ccccccchhheee
Confidence 66799999999999998887 89999999999999 9999999999999999998765 33443 4666543 23455
Q ss_pred EccCCCcEEEEEecC----CeEEEEeccCCc-cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 158 IEPGSPHVFYTCGED----GLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 158 ~~~~~~~~l~~~~~d----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
|.-+-.+ +++.+.+ ..+++||.+.-. ....+... ....|.---|+||.+.++++|-.+.++..+.
T Consensus 222 w~Gn~~r-lisTGF~~~R~reV~~~Dtr~f~~p~~tleld---------~stGvLiPl~DpDt~llfLaGKG~~~l~~lE 291 (1012)
T KOG1445|consen 222 WAGNWER-LISTGFTTKRIREVRAYDTRKFGAPVHTLELD---------SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLE 291 (1012)
T ss_pred eccchhh-hhhcccchhhheeeeeeeccccCCcceeEEee---------cccceEeeeecCCCceEEEecCCcceEEEEE
Confidence 6544323 4554443 578999987643 33333322 1223444567888555555665666666666
Q ss_pred c
Q 012064 233 I 233 (471)
Q Consensus 233 ~ 233 (471)
+
T Consensus 292 ~ 292 (1012)
T KOG1445|consen 292 M 292 (1012)
T ss_pred e
Confidence 5
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.4e-26 Score=204.21 Aligned_cols=224 Identities=20% Similarity=0.345 Sum_probs=194.1
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
..+.+++|+.|..+.+|.+.....+ ..|.+|..+|.++.|+++..+|+.|+.+|+|++|
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i---------------------~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAI---------------------TSLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred cceeeccCCCceeeccccccCCchh---------------------heeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 3477899999999999998744433 4589999999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 168 (471)
|++..+.++++ .+|...+..+.|+| -+.+.++++.|+.+++||++...+... +.+|...+..+.|+|+| .+++.
T Consensus 98 DleeAk~vrtL-tgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~--~~s~~~vv~~l~lsP~G-r~v~~ 171 (825)
T KOG0267|consen 98 DLEEAKIVRTL-TGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHT--YKSHTRVVDVLRLSPDG-RWVAS 171 (825)
T ss_pred ehhhhhhhhhh-hccccCcceeeecc--ceEEeccccccccceehhhhccCceee--ecCCcceeEEEeecCCC-ceeec
Confidence 99999988777 89999999999999 899999999999999999987777765 78899999999999999 68899
Q ss_pred EecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCC
Q 012064 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (471)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (471)
+++|..+++||+..|+....|.. |...+..+.|+|. ..+++.|+.|+++++||+++.+.+..
T Consensus 172 g~ed~tvki~d~~agk~~~ef~~----------~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s------- 233 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGKLSKEFKS----------HEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISS------- 233 (825)
T ss_pred cCCcceeeeeccccccccccccc----------ccccccccccCch-hhhhccCCCCceeeeeccceeEEeec-------
Confidence 99999999999999999888765 5567889999998 68999999999999999998775543
Q ss_pred CcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEE
Q 012064 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY 285 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~ 285 (471)
.......|.+.+|+|+++.+.+|....+.
T Consensus 234 --------~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 234 --------GKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred --------cCCccCCceeeeecCCceeeecCchhhhh
Confidence 11225679999999999988887655443
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.5e-24 Score=180.96 Aligned_cols=256 Identities=17% Similarity=0.232 Sum_probs=189.9
Q ss_pred CCCcEEEEecCCCeEEEEEcccCccccccccceeccccccee---eeeeeEEeccccccEEEEEEcCCC-CEEEEecCCC
Q 012064 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVL---RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDR 83 (471)
Q Consensus 8 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~ 83 (471)
..|+++|.|+.|..|.|||+.--..+ ++...-++..... ..+....-.+|++.|..++|+..- ..||+||.|.
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v---~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAV---LPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred CCcceEEEeccCceeEEecccccccc---ccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 34789999999999999998732221 1111111111000 001112345799999999998864 6899999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
+|++||+.++++...+ ..|.+.|.++.|+|. ...+|++|+.|+++.+.|.+....... .-...+.|..++|.|..+
T Consensus 267 TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKSSI-THHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred eEEEEEcCCCCcceeh-hhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCc--eEEeccceEEEEecCCCc
Confidence 9999999999997777 689999999999995 788999999999999999986433322 223667899999999999
Q ss_pred cEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
+.+++++.||+++-+|+|.. +++..++. |..+|.++++++..+.++++++.|+.+++|++.......
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~A----------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-- 410 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKA----------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-- 410 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEe----------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc--
Confidence 99999999999999999987 66666665 777999999999988999999999999999997654110
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCe-EEEee-CCcEEEEecCCCC
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~~~i~i~d~~~~~ 293 (471)
.......-+...|.++.|+-.+ ++.|+ .+.+++||+.+..
T Consensus 411 -----------v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 411 -----------VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred -----------cccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 0000001123567778887654 55555 4469999998753
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-25 Score=209.25 Aligned_cols=290 Identities=15% Similarity=0.210 Sum_probs=219.4
Q ss_pred EEEEEcCCCC-EEEEe----------cCCCeEEEEECCC--Cc----eEEEeecCCCcceeEEEEecCCCCe----EEEE
Q 012064 65 NTVSFNTDGD-ILISG----------SDDRRVILWDWKT--ER----VKLSFHSGHNDNVFQAKIMPFTDDR----SIVT 123 (471)
Q Consensus 65 ~~~~~s~~g~-~l~s~----------~~d~~i~iwd~~~--~~----~~~~~~~~~~~~v~~~~~~~~~~~~----~l~s 123 (471)
-.++|+|++. ++|+| +.+.++.||.+.. .+ ....+ .-....+.++|.+ .+. .|+.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~--~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGS--YGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecc--cCCCccceeec
Confidence 3578999886 55544 3345666665532 22 11222 2345788999999 444 4888
Q ss_pred EeCCCeEEEEecccc----CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCc
Q 012064 124 CAADGQVRHAQILER----GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (471)
|.+||.|.+||...- +.........|.+.|..+.|++..++++++|+.||.|.|||+.+.+....+...
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~------- 158 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ------- 158 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC-------
Confidence 999999999998652 112223367899999999999999889999999999999999886544433211
Q ss_pred ceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEE
Q 012064 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVS 278 (471)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 278 (471)
.....|.+++|+....++|++++.+|.+.+||++..+.+-.+. ....+..+..++|+|++. .|++
T Consensus 159 -~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-------------~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 159 -APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-------------DTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred -CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-------------cCCCccceeeeeeCCCCceeeee
Confidence 1445799999998878899999999999999999875322111 111124578999999873 4444
Q ss_pred ee-CC---cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC
Q 012064 279 YN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (471)
Q Consensus 279 ~~-~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 354 (471)
++ ++ .|.+||++.. ....+.+++|... |.++.|...|
T Consensus 225 As~dd~~PviqlWDlR~a-------------------------------------ssP~k~~~~H~~G--ilslsWc~~D 265 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFA-------------------------------------SSPLKILEGHQRG--ILSLSWCPQD 265 (1049)
T ss_pred ecCCCCCceeEeeccccc-------------------------------------CCchhhhcccccc--eeeeccCCCC
Confidence 44 33 5999998764 3456778899887 9999994445
Q ss_pred CcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEEecCCCCC
Q 012064 355 CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 355 g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 418 (471)
.++|++++.|+.|.+|+.++++.+..+......+..+.|+|... .++.++.||.|-|+.+.+..
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 58999999999999999999999999998888999999999877 88889999999999998765
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.1e-24 Score=174.78 Aligned_cols=293 Identities=16% Similarity=0.190 Sum_probs=199.0
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC--CCCEEEEecCCCeEEEE
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILW 88 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--~g~~l~s~~~d~~i~iw 88 (471)
..+|++.+.|+|++||..+|+.+ ..+++|...++.+.|.. ....+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---------------------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---------------------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---------------------heecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 56999999999999999998888 68999999999999976 35778999999999999
Q ss_pred ECCCCceEEEee-cCCC-cceeEEEEecCCCCeEEEEEeC----CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 89 DWKTERVKLSFH-SGHN-DNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 89 d~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
|+........+. ..+. .+..+++-.. +++.+++|.. +-.+.+||++..+.........|.+.|+++.|+|.+
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 998876655543 3343 3566666665 6677777643 567999999988774444567899999999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
++++++|+.||.+.+||++.......+.. ...+...|.++.|..++-..+.+-+..+...+|+++.+......
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-------viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLH-------VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHH-------hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 99999999999999999987632211110 00155679999999875457888899999999999987632221
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeEE-Eee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLV-SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~-~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
..|......... ......+... .+| +...++ .++ .++..++-+.......
T Consensus 251 --~~~~~~~~d~r~-~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~----------------------- 303 (376)
T KOG1188|consen 251 --ENPDVSADDLRK-EDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGS----------------------- 303 (376)
T ss_pred --cCccchhhhHHh-hhhhhheeec-ccCCCcceEEEeccccCceeEEEeeeccccc-----------------------
Confidence 111000000000 0001111111 123 233333 333 3444444433211000
Q ss_pred cCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 320 ASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
....+..+.+ |... |+++.| ...+.++++|++||.+.+|..
T Consensus 304 ---------~~~~~a~l~g~~~ei--VR~i~~-~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 304 ---------LLTEPAILQGGHEEI--VRDILF-DVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ---------ccCccccccCCcHHH--HHHHhh-hcccceeeccCCCceEEEEec
Confidence 0233455665 4433 788888 888899999999999999986
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=7.4e-24 Score=175.94 Aligned_cols=262 Identities=18% Similarity=0.229 Sum_probs=188.9
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVIL 87 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~i 87 (471)
+..+.|+=++.|.|+||++.. .+.....+-+.. .....+++.++.+|.+.=+.++|||-. ..|++|.--+.|++
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~~~~---~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAP--HLNALSEPGLEV---KDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHL 238 (440)
T ss_pred CcceeeeecccCcEEEEEchh--hhhhhcCccccc---cccccCceEEecccCccceeeecccccccccccCccccceEe
Confidence 455677778899999999762 111111111111 113446778999999999999999943 24788888889999
Q ss_pred EECCCCceEE--EeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcE
Q 012064 88 WDWKTERVKL--SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (471)
Q Consensus 88 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (471)
|...+|.-.. .-+.+|+..|..++|+|. ....|++|+.||+|+|||++.+..........|.+.|+.|.|+...+ +
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-l 316 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-L 316 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-e
Confidence 9988875321 112579999999999994 67789999999999999999986666566789999999999999886 8
Q ss_pred EEEEecCCeEEEEeccCCc---cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 166 FYTCGEDGLVQHFDLRTGA---ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
|++|+.||+++|||+++-+ ++..++. |..+|+++.|+|.....|++++.|.+|.+||+....-....
T Consensus 317 LasG~DdGt~~iwDLR~~~~~~pVA~fk~----------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 317 LASGGDDGTLSIWDLRQFKSGQPVATFKY----------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eeecCCCceEEEEEhhhccCCCcceeEEe----------ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 9999999999999998754 4445544 77799999999998889999999999999999754321110
Q ss_pred ---CCCCCCCcCCCCccc-CCCccceEEEEEcCCC-CeEEEeeCCcEEEEe
Q 012064 243 ---DFGQPADYFCPPNLI-GDEQVGITGLAFSDQS-ELLVSYNDEFIYLFT 288 (471)
Q Consensus 243 ---~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~d 288 (471)
.... .....|.-++ ...+..+..+.|+++- -+|++.+-+.+.+|.
T Consensus 387 ~~~a~~~-L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 387 DQEAAEG-LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred ccccccc-hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 0000 1111122222 2246678899999864 366666655555553
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=173.01 Aligned_cols=290 Identities=13% Similarity=0.154 Sum_probs=203.0
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee-ee
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GR 152 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~ 152 (471)
..+|++-.+|.|++||..+++.+..+ +++...++.++|........+.+|+.||+|++||++...........++. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 56888889999999999999998888 89999999999986323577899999999999999998887766666666 56
Q ss_pred EEEEEEccCCCcEEEEEe----cCCeEEEEeccCCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCe
Q 012064 153 AHKLAIEPGSPHVFYTCG----EDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (471)
..+++.+..+ +++++|+ .+-.+.+||.|..+. +..+... |...|+++.|+|.++++|++|+.||-
T Consensus 120 f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS---------H~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 120 FICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNES---------HNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred ceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhh---------ccCcceeEEecCCCCCeEEeecccce
Confidence 6777776565 5666664 367899999998876 4443321 66789999999999999999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC--CeEEEeeCCcEEEEecCCCCCCCCCCCCCccc
Q 012064 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (471)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 305 (471)
|.+||+....... .+.. .-.+...|..+.|..++ ++.+....++..+|+++.+.....+.......
T Consensus 190 vnlfD~~~d~EeD-----------aL~~-viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 190 VNLFDTKKDNEED-----------ALLH-VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred EEeeecCCCcchh-----------hHHH-hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 9999998653111 1112 22346679999999988 55555558899999998875333322110000
Q ss_pred cccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEcc---C---Ceee
Q 012064 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK---G---GELI 378 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~---~---~~~~ 378 (471)
. ......+...+..... ..++...+.++. -+...++-+. + .+.+
T Consensus 258 ~----------------------------d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~ 308 (376)
T KOG1188|consen 258 D----------------------------DLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP 308 (376)
T ss_pred h----------------------------hHHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCcc
Confidence 0 0000000001222111 334445555444 4555555443 2 3445
Q ss_pred EEecC-CCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 379 RVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 379 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
..+.+ |...|.++.|...+.++.||++||.+.+|..+
T Consensus 309 a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 309 AILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 56666 66788999999888999999999999999964
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=9e-24 Score=175.47 Aligned_cols=267 Identities=20% Similarity=0.277 Sum_probs=192.7
Q ss_pred EEeccccccEEEEEEcCCC--CEEEEecCCCeEEEEECCC----------------CceEEEeecCCCcceeEEEEecCC
Q 012064 55 AKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKT----------------ERVKLSFHSGHNDNVFQAKIMPFT 116 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g--~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~ 116 (471)
...-+|.+.++.+.-++-+ .+.|+-+..|.|.||++.. .+++.++ .+|...=+.++|||.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~- 222 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPI- 222 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecccc-
Confidence 3445788888888888765 4666777899999999843 2345566 789999999999995
Q ss_pred CCeEEEEEeCCCeEEEEeccccCcce-eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccC
Q 012064 117 DDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (471)
....|++|.--+.|++|...++.... ...+.+|+..|..++|+|....+|++|+-||+|+|||+|.+.....+....
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA-- 300 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA-- 300 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec--
Confidence 44457888878899999998876532 234677999999999999998999999999999999999985444333211
Q ss_pred CcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC--
Q 012064 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-- 273 (471)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 273 (471)
|...|+.+.|+.. ..+|++|+.||+++|||+|..+.. .|...+..|..+|+++.|+|..
T Consensus 301 ------h~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~------------~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 301 ------HNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSG------------QPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred ------cCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCC------------CcceeEEeccCCeeEEEeccccCc
Confidence 6678999999998 459999999999999999986532 3455677889999999999954
Q ss_pred CeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC
Q 012064 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (471)
Q Consensus 274 ~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (471)
.+.+++.|++|.+||+....-......... .. -...+.+.+.-|.+...+..+.|+..
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~---------------------~~-L~dlPpQLLFVHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAA---------------------EG-LQDLPPQLLFVHQGQKEVKEVHWHRQ 419 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccc---------------------cc-hhcCCceeEEEecchhHhhhheeccC
Confidence 345556688999999975432111100000 00 00122334444544444777888333
Q ss_pred CCcEEEEeeCCCe
Q 012064 354 KCEYVVSGSDCGR 366 (471)
Q Consensus 354 ~g~~l~~g~~dg~ 366 (471)
.-.++++.+.||.
T Consensus 420 iPG~lvsTa~dGf 432 (440)
T KOG0302|consen 420 IPGLLVSTAIDGF 432 (440)
T ss_pred CCCeEEEecccce
Confidence 3457777777774
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.6e-24 Score=183.32 Aligned_cols=231 Identities=16% Similarity=0.220 Sum_probs=182.3
Q ss_pred EEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCC
Q 012064 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT 92 (471)
Q Consensus 13 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~ 92 (471)
+++.+.|..+++|.-. |+.. ..+..+.+.+. .-.|++......|+++||..+.|+|||++
T Consensus 50 vas~~gdk~~~~~~K~-g~~~----------------~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~- 109 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKD-GKTP----------------EVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR- 109 (673)
T ss_pred EeecCCceeEEEeccc-CCCC----------------ccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH-
Confidence 4555679999999866 5522 22333444443 33455555556899999999999999998
Q ss_pred CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece-eeeEEEEEEccCCCcEEEEEec
Q 012064 93 ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-QGRAHKLAIEPGSPHVFYTCGE 171 (471)
Q Consensus 93 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~ 171 (471)
.+.+.+++++|+..|+++.|+- .+.+|++++..|.|.|..+.++..... +... ...|.-+.|+|....+|.+++.
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt~--f~~~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTTT--FTIDSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred HHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEEecccCccccc--eecCCCCeEEEeecccccceeeEeecc
Confidence 4555677799999999999998 899999999999999999988765443 3322 3556789999999889999999
Q ss_pred CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcC
Q 012064 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (471)
+|.+.+||+....+...+... |..+...++|+|.+..+|++.+.|..|.+||.+..+....+.+
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~---------HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y------- 249 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEA---------HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY------- 249 (673)
T ss_pred CCeEEEEeccCCCcccchhhh---------ccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-------
Confidence 999999999887665444321 6778899999999999999999999999999997664433222
Q ss_pred CCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 252 CPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
..+...++|+++|.+|+.|+ .|.++.||++..
T Consensus 250 ---------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 250 ---------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ---------cCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 45678999999999999988 779999999875
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=178.31 Aligned_cols=253 Identities=16% Similarity=0.133 Sum_probs=185.2
Q ss_pred CCCCCCCCC--cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC-CEEEE
Q 012064 2 DDASNNNNN--KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILIS 78 (471)
Q Consensus 2 ~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s 78 (471)
.+++|+|.. +++|+|..-|.|-+||+.+.+... .-...+..|.++|.++.|+|.. ..+++
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-----------------d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-----------------DGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-----------------CceEEeccCCccccceEecCCChhheee
Confidence 456788864 578899999999999996333321 2335678899999999999965 67888
Q ss_pred ecCCCeEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 79 GSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
.|+||+|++-|++.+.....+. ......+..+.|+. +...++.+..=|.+.+||.+.++.... .+.-|...|.+++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~f~~iD~R~~~s~~~-~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGNFNVIDLRTDGSEYE-NLRLHKKKITSVA 329 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecccceEEEEeecCCccch-hhhhhhcccceee
Confidence 9999999999998765322110 22445677788887 778888888888999999988765321 2566888999999
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
++|-.+.++++++.|++.+|||++.-....... .....|...|.+..|+|+++. |++.+.|..|++||..--.
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~------lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPF------LSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcc------eecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccc
Confidence 999999999999999999999999765544300 111226778999999999776 8899999999999984110
Q ss_pred cCCCCCCCCCCCcCCCCcccCC-----CccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGD-----EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
. ..++...+.+ .--......|.|+..+++.+. -..|-+||-..+
T Consensus 403 a-----------~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 403 A-----------KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred c-----------cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 0 0011111111 112244578999999999988 457999997764
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.2e-23 Score=177.52 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=208.5
Q ss_pred CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc--cccEEEEEEcCCCCEEE--EecCCCeEEEEECCCCc
Q 012064 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH--RGCVNTVSFNTDGDILI--SGSDDRRVILWDWKTER 94 (471)
Q Consensus 19 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~~~~s~~g~~l~--s~~~d~~i~iwd~~~~~ 94 (471)
..+++|||...-+... .+..| .-.+.++.|+.... |+ +-+.|..+++|.- .|+
T Consensus 11 gd~~kl~D~s~~~~~~---------------------~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K-~g~ 67 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKS---------------------EYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEK-DGK 67 (673)
T ss_pred CCceEEeecccccCcc---------------------ccccCCCCCcceeeeccccce-EEEeecCCceeEEEecc-cCC
Confidence 3469999988544432 22222 23388999987653 44 4456788999963 333
Q ss_pred e--EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC
Q 012064 95 V--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (471)
Q Consensus 95 ~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 172 (471)
. +....+.-...-.|++... ...++++|+..+.|+|||++..... +.+..|.+.|+++.++..+ ..+++++..
T Consensus 68 ~~~Vp~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~kl~h--r~lkdh~stvt~v~YN~~D-eyiAsvs~g 142 (673)
T KOG4378|consen 68 TPEVPRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRAKLIH--RFLKDHQSTVTYVDYNNTD-EYIASVSDG 142 (673)
T ss_pred CCccceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHHHHHh--hhccCCcceeEEEEecCCc-ceeEEeccC
Confidence 1 1111111222334444444 4579999999999999999843333 4489999999999999888 468999999
Q ss_pred CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCC
Q 012064 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (471)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (471)
|.|.+..+.++.....+... ....+.-+.|+|....+|.+++.+|.|.+||......
T Consensus 143 Gdiiih~~~t~~~tt~f~~~---------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-------------- 199 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTID---------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-------------- 199 (673)
T ss_pred CcEEEEecccCccccceecC---------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------------
Confidence 99999999998877776542 2345778999998777888999999999999987652
Q ss_pred CCcccCCCccceEEEEEcCCCC-eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccc
Q 012064 253 PPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (471)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (471)
.......|..+...++|+|... +|++.+ |.+|++||+.....
T Consensus 200 ~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s------------------------------------ 243 (673)
T KOG4378|consen 200 IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS------------------------------------ 243 (673)
T ss_pred ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc------------------------------------
Confidence 2345567889999999999765 566666 77999999976321
Q ss_pred cCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC-eeeEEecCCCcceEEEEEcCCC
Q 012064 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHS 397 (471)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~ 397 (471)
...+... . +...++| +++|.+|++|+..|.|..||+... .++..+..|...|++++|-|..
T Consensus 244 --~~~l~y~-~--Plstvaf-~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 --TDRLTYS-H--PLSTVAF-SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --cceeeec-C--Ccceeee-cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 1222211 1 2778898 999999999999999999999754 5778889999999999998764
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=2.1e-22 Score=179.35 Aligned_cols=273 Identities=18% Similarity=0.234 Sum_probs=203.8
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
|.+++|-|||..|+.+. +..+.+||.+.|.++ +++++|.+.|+|++|+.||+.+|+|+
T Consensus 15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll---------------------qtLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL---------------------QPLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred hheeEECCCCceEEEec-CCEEEEEeCCCcccc---------------------cccccccceEEEEEEccCCceeccCC
Confidence 46789999999988876 446889999999888 79999999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.|..|.+|+-+-.. +..+ .|...|.|+.|+| -...|++|+-. ..-+|......... ......+.+.+|..
T Consensus 73 aDK~VI~W~~klEG-~LkY--SH~D~IQCMsFNP--~~h~LasCsLs-dFglWS~~qK~V~K----~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEG-ILKY--SHNDAIQCMSFNP--ITHQLASCSLS-DFGLWSPEQKSVSK----HKSSSRIICCSWTN 142 (1081)
T ss_pred CceeEEEecccccc-eeee--ccCCeeeEeecCc--hHHHhhhcchh-hccccChhhhhHHh----hhhheeEEEeeecC
Confidence 99999999855333 3343 6999999999999 88999998864 57789865543322 12345788999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC----ceEEEEeCCCeEEEEEcCCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~i~i~d~~~~ 236 (471)
|| .+++.|-.+|+|.+-+- +++....+..+.. ...+|.+++|+|..+ ..+++..-..++.+|.+...
T Consensus 143 DG-qylalG~~nGTIsiRNk-~gEek~~I~Rpgg-------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 143 DG-QYLALGMFNGTISIRNK-NGEEKVKIERPGG-------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred CC-cEEEEeccCceEEeecC-CCCcceEEeCCCC-------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 99 57899999999999753 3343333332211 456899999999732 36778888888888888654
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (471)
.....- .-.-...|+.+.++|.++..|+ ++.+.+|.-+.
T Consensus 214 ~Igk~r----------------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------------------------ 253 (1081)
T KOG1538|consen 214 QIGKDR----------------ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------------------------ 253 (1081)
T ss_pred eecccc----------------cCCCCchhheeccCCcEEEEccCCCceEEEeecC------------------------
Confidence 322110 0122346889999999877665 77888887543
Q ss_pred CCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
..+.+...... .|+.++. .|++++++.|..||+|--|++
T Consensus 254 ---------------vrLGTvg~~D~--WIWtV~~-~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 ---------------VRLGTVGEQDS--WIWTVQA-KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ---------------eEEeeccccce--eEEEEEE-ccCCceEEEEEccCeeehhhh
Confidence 11222222333 4899998 999999999999999988876
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.91 E-value=3.4e-23 Score=163.97 Aligned_cols=300 Identities=14% Similarity=0.118 Sum_probs=201.8
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
...|++|.+.|+++.|-.+++ |.+|..-|.+++|++++.+.+..+...+...|+.+.-.| + ..+.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEEEE
Confidence 356779999999999987765 888999999999999998887777446788999999888 5 678888999999999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC-eEEEE-----------eccCCccceeeeecccCCcCcce
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHF-----------DLRTGAATELFTCRPIDDRRNYM 201 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iw-----------d~~~~~~~~~~~~~~~~~~~~~~ 201 (471)
++.....+.. |.-.++++.|.+.. +...+... ....+ |......+..... +...
T Consensus 83 ~ia~s~~i~i-----~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd------~~~~ 148 (323)
T KOG0322|consen 83 TIAYSAFISI-----HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD------SERS 148 (323)
T ss_pred EccCcceEEE-----eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCc------hhcc
Confidence 9976554332 44445556555422 12221111 11112 1111111111110 0111
Q ss_pred eeeeeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe
Q 012064 202 TVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 202 ~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
..+.+.+..+..+.+ -+++.|.++|.+.+||+.++...-. +.+. .........|..++.++.+.+.-..=+++
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~--~~~~---~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ--LPQS---SKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec--cccc---cccccchhhccCcceeeeechhhcCCcCC
Confidence 233456665433322 3567788999999999998632211 1110 01122334578889999998754333334
Q ss_pred e-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeeeeCCCCcE
Q 012064 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEY 357 (471)
Q Consensus 280 ~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~g~~ 357 (471)
+ ++.+..|+++.....-+ ...... .+.+ +..+.. -||++.
T Consensus 224 ga~dkl~~~Sl~~s~gslq----------------------------------~~~e~~lknpG---v~gvrI-RpD~KI 265 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQ----------------------------------IRKEITLKNPG---VSGVRI-RPDGKI 265 (323)
T ss_pred CccccceeeeeccccCccc----------------------------------ccceEEecCCC---ccceEE-ccCCcE
Confidence 3 66788888765321111 011111 1222 666776 999999
Q ss_pred EEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 358 l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
+|+++.|+.||||+.++..++..++-|++.|++++|+|+.+++|+++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999986
No 165
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.1e-21 Score=176.81 Aligned_cols=369 Identities=16% Similarity=0.207 Sum_probs=247.9
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC---CEEEEec
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGS 80 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g---~~l~s~~ 80 (471)
+.|++|++.++... +..|.||...||+++ +.+.+|..+++.+.+.|.. .++.+++
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i---------------------~~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECI---------------------TSLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhh---------------------hhcccccCccceeeecCCCccceEEEEEe
Confidence 57899999988776 668999999999999 6899999999999998854 4778999
Q ss_pred CCCeEEEEECCCCceEEEee------------------------------------------------------------
Q 012064 81 DDRRVILWDWKTERVKLSFH------------------------------------------------------------ 100 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~------------------------------------------------------------ 100 (471)
.+|.|++||...++.+..+.
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 99999999987654322210
Q ss_pred ------------------------------------------cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc-
Q 012064 101 ------------------------------------------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE- 137 (471)
Q Consensus 101 ------------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~- 137 (471)
..|.-.+++.+++| ++++++++..||.|.+|.--.
T Consensus 160 ~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 160 HQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred hcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEecccc
Confidence 01334467889999 999999999999999997433
Q ss_pred -cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 138 -RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 138 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
........+.-|...|.+++|+++|. .+++||.++.+.+|.+++++.....+ -.++|..+.++|| +
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~kqfLPR-----------Lgs~I~~i~vS~d-s 304 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGKKQFLPR-----------LGSPILHIVVSPD-S 304 (792)
T ss_pred ccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCCcccccc-----------cCCeeEEEEEcCC-C
Confidence 33333345777889999999999995 68999999999999999998332222 4458999999999 6
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe-EEEeeCCcEEEEecCCCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~i~i~d~~~~~~~ 295 (471)
.+.+....|..|.+....+.......+--.+. ......+..+-.+.++++|.-+. +..+..+.+.+||+-+....
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~----~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPP----TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCccCC----CccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 78888889999999988766543332211110 01112233556788899995444 44455789999999887655
Q ss_pred CCCCCCCcccccc---------ccccCCCCCCccCCCCCC-------------------cccccC--CeeeecCCceeEe
Q 012064 296 NPPPSSPVSTRSE---------ASEMGSDHTSAASPSTAN-------------------TDVRIA--PQVYKGHRNCVTV 345 (471)
Q Consensus 296 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------------------~~~~~~--~~~~~~~~~~~~i 345 (471)
..+.....+.... +...+..+..++...... ..+... -.....|... .
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~--~ 458 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA--F 458 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce--e
Confidence 4433211111111 011111121111111100 000000 1122345544 2
Q ss_pred eeeeeeCCCCc-EEEEeeCCCeEEEEEccCC----------eeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 346 KGVNFFGPKCE-YVVSGSDCGRIFIWKKKGG----------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 346 ~~~~~~s~~g~-~l~~g~~dg~v~iwd~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
...++.++... .+++++.||.++||-+.+- .+...-.-|..+++.++|+.||..|+ .+.|++|.+||.
T Consensus 459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDY 537 (792)
T ss_pred EEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecC
Confidence 33333244333 8889999999999988322 22222223788999999999996554 567899999999
Q ss_pred CC
Q 012064 415 NA 416 (471)
Q Consensus 415 ~~ 416 (471)
.+
T Consensus 538 ~~ 539 (792)
T KOG1963|consen 538 DT 539 (792)
T ss_pred CC
Confidence 98
No 166
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.7e-22 Score=168.30 Aligned_cols=287 Identities=14% Similarity=0.157 Sum_probs=203.1
Q ss_pred EEEEcCCCCEEEEecCC---CeEEEEECCCCceEEEeecCCC----cceeEEEEecC-----CCCeEEEEEeCCCeEEEE
Q 012064 66 TVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHN----DNVFQAKIMPF-----TDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 66 ~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~-----~~~~~l~s~~~dg~i~iw 133 (471)
.+..-|+..+++++-.+ ..+.+|=.+..+.-.-. .|. ..-.|+.|.-. ..|+++|.|..|..|.||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYv--HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYV--HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeE--ecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 44556766666665432 23444433333321111 122 22245666432 247899999999999999
Q ss_pred eccccCccee-eE------------------eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeeccc
Q 012064 134 QILERGGVET-KL------------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (471)
Q Consensus 134 d~~~~~~~~~-~~------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (471)
|+.-...+.. .. -.+|++.|.+++|+..-.++|++|+.|.+|++||+.++++...+..
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~--- 284 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH--- 284 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh---
Confidence 9864332211 11 2358888999999998889999999999999999999999988874
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (471)
+...|.++.|+|..+..|++|+.|+++.+.|.|...... ..-.-.+.|..++|.|...
T Consensus 285 -------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---------------~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 285 -------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---------------KEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred -------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---------------ceEEeccceEEEEecCCCc
Confidence 667899999999999999999999999999999532110 0111256799999999765
Q ss_pred e--EEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeC
Q 012064 275 L--LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (471)
Q Consensus 275 ~--l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 352 (471)
. +++..+|.++-+|++.. ..++..++.|... |.++++..
T Consensus 343 ~~f~~~tddG~v~~~D~R~~-------------------------------------~~~vwt~~AHd~~--ISgl~~n~ 383 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNP-------------------------------------GKPVWTLKAHDDE--ISGLSVNI 383 (463)
T ss_pred eeEEEecCCceEEeeecCCC-------------------------------------CCceeEEEeccCC--cceEEecC
Confidence 3 44444789999999874 3567888889887 88998833
Q ss_pred CCCcEEEEeeCCCeEEEEEccCCeeeEEecCCC---cceEEEEEcCCCC-EEEEeecCCcEEEecCCCCCC
Q 012064 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR---HVVNCIEPHPHST-VLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 353 ~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~---~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 419 (471)
..-.++++++.|+.|++|++...... ....|. +...|+++.|+-. .||.|+..+.++|||+.+...
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 44568899999999999998644332 112222 3466777777765 678888888899999987654
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.3e-22 Score=176.89 Aligned_cols=283 Identities=16% Similarity=0.272 Sum_probs=204.3
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCC--EEEEec
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD--ILISGS 80 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~--~l~s~~ 80 (471)
+++-.|.|.+||+|+.||++|||.+.||.++. +.+ -.+.|.|++|+|.+. .||++-
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr---------------------~~~-~d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVR---------------------TVQ-FDSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeecceEEE---------------------EEe-ecceeEEEEecCCCCceeEEEEe
Confidence 45677899999999999999999999999983 332 345899999999764 444433
Q ss_pred CCC--------------------------------eEEEEECCC---CceEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 81 DDR--------------------------------RVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 81 ~d~--------------------------------~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
.+. .+..|.-.. .+.-..+...|...|..+.|+. .|.||++..
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~ 540 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVM 540 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec--CCceEEEec
Confidence 222 233343221 1100011235788999999999 999999986
Q ss_pred CC---CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCccee
Q 012064 126 AD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 126 ~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
.+ ..|.|.++........ +....+.+.++.|+|..+++ ++++ ...|++||+.....++.+.. .
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~P--F~kskG~vq~v~FHPs~p~l-fVaT-q~~vRiYdL~kqelvKkL~t----------g 606 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSP--FRKSKGLVQRVKFHPSKPYL-FVAT-QRSVRIYDLSKQELVKKLLT----------G 606 (733)
T ss_pred cCCCcceEEEEecccccccCc--hhhcCCceeEEEecCCCceE-EEEe-ccceEEEehhHHHHHHHHhc----------C
Confidence 64 4688888865554433 55567789999999999754 4444 35799999988777665542 4
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC-
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND- 281 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 281 (471)
...|..++.+|. |..|+.|+.|+.+..||+.-.. .+......|...+++++|++.-.+++++++
T Consensus 607 ~kwiS~msihp~-GDnli~gs~d~k~~WfDldlss--------------kPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 607 SKWISSMSIHPN-GDNLILGSYDKKMCWFDLDLSS--------------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred CeeeeeeeecCC-CCeEEEecCCCeeEEEEcccCc--------------chhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 457899999998 5677889999999999997653 345566778899999999999999999996
Q ss_pred CcEEEEecCCC--CCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce--eEeeeeeeeCCCCcE
Q 012064 282 EFIYLFTQDMG--LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC--VTVKGVNFFGPKCEY 357 (471)
Q Consensus 282 ~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~s~~g~~ 357 (471)
+++.+|--.-- ...++ ...++..+.+|... ..|..+.| +|..-+
T Consensus 672 gtv~Vfhg~VY~Dl~qnp-------------------------------liVPlK~L~gH~~~~~~gVLd~~w-HP~qpW 719 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNP-------------------------------LIVPLKRLRGHEKTNDLGVLDTIW-HPRQPW 719 (733)
T ss_pred CcEEEEeeeeehhhhcCC-------------------------------ceEeeeeccCceeecccceEeecc-cCCCce
Confidence 57777753211 11111 02345677777643 33778888 999999
Q ss_pred EEEeeCCCeEEEE
Q 012064 358 VVSGSDCGRIFIW 370 (471)
Q Consensus 358 l~~g~~dg~v~iw 370 (471)
|++++.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=2.3e-22 Score=164.24 Aligned_cols=270 Identities=14% Similarity=0.156 Sum_probs=192.3
Q ss_pred cccccEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 59 KHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 59 ~h~~~V~~~~~s~~----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
.|......++|+-| ..+||.||.-|.|+|.|+.+++....+ .+|...|+.+.|.|. +.+++++++.|..||+|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~-~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCC-CCcEEEEecCCceEEEEe
Confidence 47788888999764 358999999999999999999998777 799999999999993 557899999999999999
Q ss_pred ccccCcceee-EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeec------------------ccC
Q 012064 135 ILERGGVETK-LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR------------------PID 195 (471)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~ 195 (471)
+++..++... -+.+|.+.|.++.|++++. .+++++.|.+|++|++...+....++.. -..
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 9998887641 2467999999999999995 7899999999999999855443222211 000
Q ss_pred CcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc-cCCCCCCCCCCCcCCCCcccCCCccceE--EEEEcCC
Q 012064 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGIT--GLAFSDQ 272 (471)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~ 272 (471)
-.....|...|.|+.|- +.++++-+-++.|..|.....+ .... ..+|.........+.-....|. ..+|+|-
T Consensus 244 fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~--vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHN--VKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred ccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhc--cCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 00111244566666665 4588888888999999984222 1110 0011111111111222233444 4456677
Q ss_pred CCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 273 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
+++||.+. .|.+++||++...+. ...++..+.....|+..+|
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~------------------------------------~~ttl~~s~~~~tVRQ~sf- 361 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPP------------------------------------KCTTLTHSKSGSTVRQTSF- 361 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCc------------------------------------cCceEEeccccceeeeeee-
Confidence 88999888 668999999875322 2234444444456999998
Q ss_pred CCCCcEEEEeeCCCeEEEEEcc
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
+.||.+|+...+|++|.-||..
T Consensus 362 S~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999863
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-23 Score=197.63 Aligned_cols=251 Identities=21% Similarity=0.290 Sum_probs=195.0
Q ss_pred cccEEEEEEcCCCCE----EEEecCCCeEEEEECCCC---c---eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 61 RGCVNTVSFNTDGDI----LISGSDDRRVILWDWKTE---R---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~----l~s~~~d~~i~iwd~~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
....+.++|.+.|.. +|.|..||.|.+||...- . .+.+. ..|++.|..+.|+++ .++.|++|+.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~-q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPF-QGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeecccc-CCceeeccCCCCcE
Confidence 456789999987765 899999999999998652 2 22333 689999999999994 45699999999999
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
.|||+...+......-....+.|.+++|+..-.++|++++.+|.+.|||++..+.+-.+.... ....+..++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~--------~~~~~S~l~ 213 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP--------GRMHCSVLA 213 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC--------Cccceeeee
Confidence 999998755443311223567899999999888999999999999999999987665554322 224578999
Q ss_pred EcCCCCceEEEEeCCC---eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEee-CCcEE
Q 012064 211 IDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIY 285 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~ 285 (471)
|+|++...+++++.|. .|.+||+|.-. .+.+...+|...|.++.|++.+ .+|++++ |++|.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccC--------------CchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 9999888888888664 59999998754 3456668899999999999977 6777766 77999
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-cEEEEeeCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDC 364 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~~d 364 (471)
+|+.++++ .+..+....++ +..+.| .|.. ..+++++-|
T Consensus 280 ~wN~~tgE--------------------------------------vl~~~p~~~nW--~fdv~w-~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 280 CWNPNTGE--------------------------------------VLGELPAQGNW--CFDVQW-CPRNPSVMAAASFD 318 (1049)
T ss_pred EecCCCce--------------------------------------EeeecCCCCcc--eeeeee-cCCCcchhhhheec
Confidence 99998853 33344444444 888898 6654 488889999
Q ss_pred CeEEEEEccCCe
Q 012064 365 GRIFIWKKKGGE 376 (471)
Q Consensus 365 g~v~iwd~~~~~ 376 (471)
|.|.||.+..+.
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999987653
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=6.2e-22 Score=176.46 Aligned_cols=282 Identities=12% Similarity=0.169 Sum_probs=213.3
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 142 (471)
.|..++|-|||..|+.+..+ .+.+||...|..+..+ ++|+..|++++|+. ||+.+++|+.|..+.+|...-... .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~-L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGI-L 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEcc--CCceeccCCCceeEEEecccccce-e
Confidence 79999999999988877554 6999999999998777 89999999999999 999999999999999998533222 2
Q ss_pred eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
-..|.+.|.|+.|+|-. +.+++++-. ..-+|..+.....+. + ....+.+.+|..| |.+++.|
T Consensus 89 ---kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K~-k-----------ss~R~~~CsWtnD-GqylalG 150 (1081)
T KOG1538|consen 89 ---KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSKH-K-----------SSSRIICCSWTND-GQYLALG 150 (1081)
T ss_pred ---eeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHhh-h-----------hheeEEEeeecCC-CcEEEEe
Confidence 34699999999999988 567777653 466887765543322 1 4457899999998 7999999
Q ss_pred eCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-----CeEEEeeCC-cEEEEecCCCCCCC
Q 012064 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-----ELLVSYNDE-FIYLFTQDMGLGPN 296 (471)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~~-~i~i~d~~~~~~~~ 296 (471)
-.+|+|.+-+-...+. .......+.+++|.+++|+|.. ..++....+ ++..|.+....
T Consensus 151 ~~nGTIsiRNk~gEek-------------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--- 214 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEK-------------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--- 214 (1081)
T ss_pred ccCceEEeecCCCCcc-------------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---
Confidence 9999998874332211 0112234567899999999964 355666644 56666654321
Q ss_pred CCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
+.+-..- .....|+.+ -++|.|+..|+.|+.+.+|.. .|-
T Consensus 215 ------------------------------------Igk~r~L--~FdP~CisY-f~NGEy~LiGGsdk~L~~fTR-~Gv 254 (1081)
T KOG1538|consen 215 ------------------------------------IGKDRAL--NFDPCCISY-FTNGEYILLGGSDKQLSLFTR-DGV 254 (1081)
T ss_pred ------------------------------------ecccccC--CCCchhhee-ccCCcEEEEccCCCceEEEee-cCe
Confidence 0000000 011456777 799999999999999999985 677
Q ss_pred eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccC
Q 012064 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP 423 (471)
Q Consensus 377 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 423 (471)
.+.++-.....|+.++..|++++++.|+.||+|-.|++......-+.
T Consensus 255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly 301 (1081)
T KOG1538|consen 255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLY 301 (1081)
T ss_pred EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhh
Confidence 77777777789999999999999999999999999999876655443
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=6.8e-21 Score=168.92 Aligned_cols=166 Identities=15% Similarity=0.210 Sum_probs=127.2
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC-CCeEEEee-
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN- 280 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~- 280 (471)
...|+.+.|+|-+...|++++.||.|++|.+..+.+ +.....+..++..|...|+++.|+|- ...|++++
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl--------~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL--------PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCC--------CcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 456778889998788999999999999999987653 22334567778889999999999994 34667776
Q ss_pred CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 281 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
+-+|++||+.+. .....+.+|.+. |..++| ||||+.+|+
T Consensus 699 d~Ti~lWDl~~~--------------------------------------~~~~~l~gHtdq--If~~AW-SpdGr~~At 737 (1012)
T KOG1445|consen 699 DSTIELWDLANA--------------------------------------KLYSRLVGHTDQ--IFGIAW-SPDGRRIAT 737 (1012)
T ss_pred cceeeeeehhhh--------------------------------------hhhheeccCcCc--eeEEEE-CCCCcceee
Confidence 559999999874 455678899987 999999 999999999
Q ss_pred eeCCCeEEEEEccCCee-eEEecCCC-cceEEEEEcCCCCEEEEeecC----CcEEEecCCCC
Q 012064 361 GSDCGRIFIWKKKGGEL-IRVIEADR-HVVNCIEPHPHSTVLASSGIE----SDIKILTPNAA 417 (471)
Q Consensus 361 g~~dg~v~iwd~~~~~~-~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 417 (471)
.+.||+|++|+-.+++. +.+-++.. ..--.+.|.-||++++..+.| ..|.+|+.++-
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 99999999999876643 22222211 223456777799988877765 35777776653
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.8e-22 Score=176.40 Aligned_cols=305 Identities=14% Similarity=0.197 Sum_probs=209.2
Q ss_pred cEEEEecCCCeEEEE--EcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 11 KRARTSVDKALVDVW--LRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
+..+....|...++| ++. +..+...+.............+.+..++..|.+.|+.++|.|....|++|+.||+|++|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla-~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLA-GLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW 321 (577)
T ss_pred CccccCchHHHHhhcccchh-cccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence 345666677788888 444 22222111100011111344566777899999999999999999999999999999999
Q ss_pred ECCC--------CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC--------cceeeEeeceeee
Q 012064 89 DWKT--------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--------GVETKLLGKHQGR 152 (471)
Q Consensus 89 d~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~ 152 (471)
+++. -+++.++ .+|.++|.|++..+ +++.+++|+.||+|+.|++.... ......+.+|.+.
T Consensus 322 nLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~--n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda 398 (577)
T KOG0642|consen 322 NLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPS--NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA 398 (577)
T ss_pred hhcccCCccccceeeeEEE-ecccCceEEEEecC--CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence 9932 2346666 79999999999999 99999999999999999664211 1223457899999
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
++.+++++.. ..|++++.||+++.|+...... ..+...+ ......++.+-.....+.++ +.....++
T Consensus 399 vw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~--------e~g~Plsvd~~ss~~a~~~~---s~~~~~~~ 465 (577)
T KOG0642|consen 399 VWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPK--------EHGYPLSVDRTSSRPAHSLA---SFRFGYTS 465 (577)
T ss_pred eeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCcc--------ccCCcceEeeccchhHhhhh---hccccccc
Confidence 9999999987 4689999999999999877665 2222111 11122344443321122222 22333333
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
+...+.. ..+.+.+.+ .......+
T Consensus 466 ~~~~ev~-------------------------s~~~~~~s~------~~~~~~~~------------------------- 489 (577)
T KOG0642|consen 466 IDDMEVV-------------------------SDLLIFESS------ASPGPRRY------------------------- 489 (577)
T ss_pred chhhhhh-------------------------hheeecccc------CCCccccc-------------------------
Confidence 3332211 011111100 00000000
Q ss_pred CCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEE
Q 012064 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~ 392 (471)
..+..+.+ .|.+.+.+++.+|+.|+++|..+++++.....|...+++++
T Consensus 490 ------------------------------~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 490 ------------------------------PQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred ------------------------------CccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceeccee
Confidence 01445555 78889999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 393 PHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 393 ~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+.|+|.+|++++.||.+++|++....+
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ecCCCceEEeecCCceeehhhccchhe
Confidence 999999999999999999999977655
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=9.4e-21 Score=152.21 Aligned_cols=282 Identities=14% Similarity=0.175 Sum_probs=191.7
Q ss_pred EEeccccccEEEEEEcCCC-CEEEEecCC-------CeEEEEECCCCc---------eEEEeecCCCcceeEEEEecCCC
Q 012064 55 AKLDKHRGCVNTVSFNTDG-DILISGSDD-------RRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTD 117 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g-~~l~s~~~d-------~~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~ 117 (471)
..|..|.+.|+.++-+|-. +.|+|+..+ ..+-||.+.... ++..+...+-+.|.|+.|.| +
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P--n 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP--N 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC--C
Confidence 4567789999999999955 566665432 247799886432 23334335667999999999 9
Q ss_pred CeEEEEEeCCCeEEEEeccccCcceee----EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecc
Q 012064 118 DRSIVTCAADGQVRHAQILERGGVETK----LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP 193 (471)
Q Consensus 118 ~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 193 (471)
+..+++.. |..|.+|++.....+... .-..+....++-+|+|..+---+....|++++.||+++.+....+...
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dA- 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDA- 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhh-
Confidence 99999887 779999999887663211 122356678889999933223456677899999999988776665432
Q ss_pred cCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC
Q 012064 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273 (471)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (471)
|...+..+.|+|....+|++++.||.|++||.|..+ .|.....+|...+.++.|+|.-
T Consensus 213 --------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------------~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 213 --------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------------FPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred --------hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------------ccccccCCCceEEEEEEecCcc
Confidence 666799999999977889999999999999999876 3456677889999999999964
Q ss_pred -CeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 274 -ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 274 -~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
+++.+++.+ .+.+|.. ...... ..+.|
T Consensus 271 dqLiLs~~SDs~V~Lsca--------------------------------------------~svSSE------~qi~~- 299 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCA--------------------------------------------SSVSSE------QQIEF- 299 (370)
T ss_pred ceEEEecCCCceeEEEec--------------------------------------------cccccc------ccccc-
Confidence 456666644 5666531 110000 01111
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEEecCCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNA 416 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 416 (471)
..|..- .-+.|..=++=-+.+| .+.++..|...|++++||.-.. .+|+-+.||++.|=++..
T Consensus 300 ~~dese--~e~~dseer~kpL~dg-~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 300 EDDESE--SEDEDSEERVKPLQDG-QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccc--CcchhhHHhccccccc-ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111000 0001111111112222 4467788999999999997666 678889999999977654
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=6.6e-19 Score=166.39 Aligned_cols=325 Identities=22% Similarity=0.390 Sum_probs=234.2
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCc-cccccccceecccccceeeeeeeEEecccc-ccEEEEEE-cCCCC-EEEEe
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQ-LSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSF-NTDGD-ILISG 79 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~-s~~g~-~l~s~ 79 (471)
+.+++.+..++.++.|+.+.+|+...+. .. ..+.++. ..+..+.+ ++++. .++..
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLI---------------------KSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeE---------------------EEEeccCCCceeeEEEECCCcceEEecc
Confidence 4577888899999999999999999665 22 3455533 36777777 88887 55554
Q ss_pred cC-CCeEEEEECCC-CceEEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 80 SD-DRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 80 ~~-d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
+. |+.+.+|+... ......+ ..|...|..++|+| ++..+++++. |+.+++|+......... +..|...+.++
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 204 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHTDPVSSL 204 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe--eccCCCceEEE
Confidence 45 89999999987 5555555 78999999999999 9988888885 99999999987555544 66799999999
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccCCccce-eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
+|+|+++.++++++.|+.|++||...+.... .+.. +.... ...|+|++ .++++++.|+.+++|+.+.
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~----------~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG----------HSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC----------CCcce-eEeECCCC-CEEEEecCCCcEEEeeecC
Confidence 9999885355555999999999888665554 2221 22222 22899984 7888999999999999987
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
... ..... ..|...+.++.|.|++..+++++ ++.+.+|+.........
T Consensus 273 ~~~-------------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------------- 321 (466)
T COG2319 273 SSS-------------LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS----------------- 321 (466)
T ss_pred CCc-------------EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE-----------------
Confidence 642 00111 44578899999999888877765 55689998766421111
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe-eCCCeEEEEEccCCeeeEEecCCCcceEEEEE
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g-~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (471)
.....|... +..+.+ .+++..++.+ ..|+.+++|++............. .+..+.+
T Consensus 322 -------------------~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 378 (466)
T COG2319 322 -------------------LTLKGHEGP--VSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSF 378 (466)
T ss_pred -------------------eeecccCCc--eEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEE
Confidence 002244443 777887 6664555555 678999999998776333333222 2889999
Q ss_pred cCCCCEEEE-eecCCcEEEecCCCCCCcc
Q 012064 394 HPHSTVLAS-SGIESDIKILTPNAADRAT 421 (471)
Q Consensus 394 s~~~~~l~s-~~~dg~i~iw~~~~~~~~~ 421 (471)
++ ...... +..++.+.+|+........
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLR 406 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeee
Confidence 98 544444 6889999999999876643
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=1.7e-18 Score=163.54 Aligned_cols=316 Identities=26% Similarity=0.436 Sum_probs=232.4
Q ss_pred CCCCc-EEEEecC-CCeEEEEEccc-CccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC-C
Q 012064 7 NNNNK-RARTSVD-KALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-D 82 (471)
Q Consensus 7 ~~~~~-~l~~~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~-d 82 (471)
++++. .++..+. |+.+++|+.+. .... ..+..|...|..++|+|++.++++++. |
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 177 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLI---------------------RTLEGHSESVTSLAFSPDGKLLASGSSLD 177 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEE---------------------EEEecCcccEEEEEECCCCCEEEecCCCC
Confidence 45555 4555444 99999999995 3333 678899999999999999999998885 9
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCe-EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
+.+++|+...+..+..+ .+|...|.+++|+| ++. .+++++.|+.+++||...+..... .+..|.... ...|+|+
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPD 252 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCC
Confidence 99999999987776666 67999999999998 887 555558999999998774444331 366677765 4489999
Q ss_pred CCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
+ ..+++++.|+.+++|+++.... ...+. . +...+.++.|+|+ +..+++++.|+.+.+||........
T Consensus 253 ~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------~--~~~~v~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 253 G-SLLASGSSDGTIRLWDLRSSSSLLRTLS--------G--HSSSVLSVAFSPD-GKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred C-CEEEEecCCCcEEEeeecCCCcEEEEEe--------c--CCccEEEEEECCC-CCEEEEeeCCCcEEEEEcCCCceEE
Confidence 8 5778999999999999987765 22221 1 4557899999997 5666668888889999887765321
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe-e-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
.. . ...|...+..+.+.+++..++.+ . ++.+.+|+.....
T Consensus 321 ~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------------- 362 (466)
T COG2319 321 SL------------T-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK------------------------- 362 (466)
T ss_pred Ee------------e-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-------------------------
Confidence 10 0 12344568888884332455554 3 5578889987642
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE-eeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCC
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~-g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (471)
.......... +..+.+ ++ ...+.. +..++.+.+|+............+...+....+++++
T Consensus 363 -------------~~~~~~~~~~---~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (466)
T COG2319 363 -------------PLKTLEGHSN---VLSVSF-SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424 (466)
T ss_pred -------------eeEEecCCce---EEEEEE-CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC
Confidence 1111111111 566776 66 444444 6889999999998887776666554789999999999
Q ss_pred CEEEEeecCCcEEEecCCC
Q 012064 398 TVLASSGIESDIKILTPNA 416 (471)
Q Consensus 398 ~~l~s~~~dg~i~iw~~~~ 416 (471)
..+++++.++.+++|+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999987
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.2e-19 Score=148.24 Aligned_cols=284 Identities=13% Similarity=0.128 Sum_probs=196.6
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecc-ccccEEEEEEc-------CCCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFN-------TDGD 74 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~s-------~~g~ 74 (471)
...++|||..|++-+.|..+++|++.... . +...+.....+..-.++- ....|...+|- |+..
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dl-y--------s~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDL-Y--------SKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhh-c--------ccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 45689999999999999999999987221 1 111122222222222221 23557777774 5678
Q ss_pred EEEEecCCCeEEEEECCCCceEEEee-cCCCc---ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-eeeEee--
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFH-SGHND---NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLG-- 147 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~-- 147 (471)
++|+.+.+.-|++||.-+|+....+. -.|.. ...+++|+| ||.+|++|. ...|+++|+...... ......
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cceEEEeeccCCCCCCcchhhhhc
Confidence 99999999999999999999866662 12333 346899999 999999876 568999999433221 111111
Q ss_pred ---ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-
Q 012064 148 ---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG- 223 (471)
Q Consensus 148 ---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~- 223 (471)
+..+.+.+++|+|.....++.++...++-|+.-..+.+...+.. +.+.|+.++|+++ |+.|.+|.
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------h~gGvThL~~~ed-Gn~lfsGaR 270 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------HGGGVTHLQWCED-GNKLFSGAR 270 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------cCCCeeeEEeccC-cCeeccccc
Confidence 23577899999999888899999999998988777777776653 6778999999999 45666665
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc---ceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCC
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV---GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~ 299 (471)
.+..|..||+|..+. +...+..|.. .-.-....|++++|++|+ +|.|++||+...
T Consensus 271 k~dkIl~WDiR~~~~--------------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~------- 329 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRD--------------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL------- 329 (406)
T ss_pred CCCeEEEEeehhccc--------------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-------
Confidence 578899999997642 1111222221 222345568999999996 889999999863
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~ 363 (471)
...+..+..+... ++.+++ +|--..+|+++.
T Consensus 330 ------------------------------gn~~sv~~~~sd~--vNgvsl-nP~mpilatssG 360 (406)
T KOG2919|consen 330 ------------------------------GNEVSVTGNYSDT--VNGVSL-NPIMPILATSSG 360 (406)
T ss_pred ------------------------------CCccccccccccc--ccceec-CcccceeeeccC
Confidence 1223344444443 788887 888777777764
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=5.7e-19 Score=159.28 Aligned_cols=288 Identities=10% Similarity=0.137 Sum_probs=176.6
Q ss_pred EEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec-CCCeEEEEECC
Q 012064 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS-DDRRVILWDWK 91 (471)
Q Consensus 13 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~-~d~~i~iwd~~ 91 (471)
.++...|+.|++|++.+...+ ...+.+. +.+....++++|++++|++++ .++.|.+|++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l------------------~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGAL------------------TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEcCCCCCEEEEEECCCCce------------------eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 445577999999999743211 1224443 335577899999999887654 47889999986
Q ss_pred -CCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcce-eeEeeceeeeEEEEEEccCCCcEE
Q 012064 92 -TERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVF 166 (471)
Q Consensus 92 -~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l 166 (471)
++.. .... ...+....++|+| +++++++++. ++.|.+|++.+..... ......+......++++|+++.++
T Consensus 66 ~~g~l~~~~~~--~~~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 66 DDGALTFAAES--PLPGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred CCCceEEeeee--cCCCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence 3332 1222 2334567899999 9998888764 7899999996433221 111111223467788999997666
Q ss_pred EEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCC--ccCCCCC
Q 012064 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKY--KWDGSTD 243 (471)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~--~~~~~~~ 243 (471)
++...++.|.+||+++............... .......++|+|+ +++++++.. ++.|.+|++... ++.....
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~----~g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV----EGAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecC----CCCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 6777789999999986432211000000000 1123567899999 567766655 899999999742 2110000
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
. .. .+.. .. +......+.++|++++++++. ++.|.+|++......
T Consensus 217 ~----~~-~p~~-~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-------------------------- 263 (330)
T PRK11028 217 L----DM-MPAD-FS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-------------------------- 263 (330)
T ss_pred E----ec-CCCc-CC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--------------------------
Confidence 0 00 0000 00 112334688999999988875 458999998643110
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEcc
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK 373 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~ 373 (471)
........... ....+.+ +|||++|++++. +++|.+|++.
T Consensus 264 --------~~~~~~~~~~~---~p~~~~~-~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 --------LSFEGHQPTET---QPRGFNI-DHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred --------EEEeEEEeccc---cCCceEE-CCCCCEEEEEEccCCcEEEEEEc
Confidence 01111111111 1456777 999999998775 8899999874
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.1e-20 Score=155.46 Aligned_cols=316 Identities=15% Similarity=0.166 Sum_probs=214.3
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeee-eeeEEe-ccccccEEEEEEcCCCCEEEE
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL-GIYAKL-DKHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-~~h~~~V~~~~~s~~g~~l~s 78 (471)
++.+.|+.++++||+|++|..+++|+++..-.. +. +++... ..|...|.|++|....++|.+
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhh----------------cCCCCceeccCccccceEEEEEccCCeeEec
Confidence 355779999999999999999999998832111 11 122222 246689999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC-cceeeEeeceeeeEEEE
Q 012064 79 GSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKL 156 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~ 156 (471)
|+.+++|.+-|+++.+.+..+. ....+.|+.+..+| -.+.|++.+.+|.|.+||.+... ......+.........+
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA 200 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence 9999999999999998877662 22345899999999 78999999999999999998765 33333344455678889
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccCCcccee-eeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
.|+|..+.++++.+..+.+-+||.+..+.... ..... .++. ....-....|+|. |+.|++--....-.+||+..
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~--~L~~--~~~~~M~~~~~~~-G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK--GLPQ--ENTEWMGSLWSPS-GNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccc--cCcc--cchhhhheeeCCC-CCeehhhhccCCCEEeeeec
Confidence 99999999999999999999999987543211 11000 0000 1122356789998 55665555555566778776
Q ss_pred CccCCCCCCCCCCCcCCCCcccCC------CccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCCCCcccccc
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGD------EQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSE 308 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~ 308 (471)
..+ +.....+ ....+.+++|-.|- -+++|++. .|++|.+.......-+.....
T Consensus 276 ~R~--------------~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~----- 335 (609)
T KOG4227|consen 276 QRC--------------FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGH----- 335 (609)
T ss_pred ccc--------------eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCc-----
Confidence 432 1111111 12345677776554 48888877 899999865322111110000
Q ss_pred ccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
+.... ............++||... +..+.| +|...+|++.+-...++||.-
T Consensus 336 ------~~~~~----~~~~~i~~~~~VLrGHRSv--~NQVRF-~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 336 ------DEEEM----PSEIFIEKELTVLRGHRSV--PNQVRF-SQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ------chhhC----chhheecceeEEEeccccc--ccceee-cCCcceEeccchhhheecccc
Confidence 00000 0011123456788999987 889998 999999999888999999963
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=5.7e-19 Score=159.26 Aligned_cols=284 Identities=12% Similarity=0.149 Sum_probs=173.9
Q ss_pred EEEecCCCeEEEEECCC-Cc--eEEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEEEeccccCcceeeEeeceee
Q 012064 76 LISGSDDRRVILWDWKT-ER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 76 l~s~~~d~~i~iwd~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
+++...++.|.+||+.+ ++ .+..+ .+.+....++++| ++++|++++ .++.|.+|++................
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC
Confidence 34446789999999964 33 33333 2345677889999 999887664 47889999997322221111111233
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCc-cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
....++++|+++.++++...++.|.+|++++.. ......... .......++++|++..++++...++.|.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------CCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 467899999996554444558999999997432 211111100 11235678899995444456667799999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCcccccc
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 308 (471)
||+.+....... ...............++|+|+|+++++.. +++|.+|+++.....
T Consensus 153 ~d~~~~g~l~~~---------~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~------------- 210 (330)
T PRK11028 153 FTLSDDGHLVAQ---------EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE------------- 210 (330)
T ss_pred EEECCCCccccc---------CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-------------
Confidence 999763211100 00000000123356789999999988776 568999998742100
Q ss_pred ccccCCCCCCccCCCCCCcccccCCeeeecC----CceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEccCCeeeEEecC
Q 012064 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGH----RNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGGELIRVIEA 383 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~ 383 (471)
......+... ........+.+ +|+|++++++.. ++.|.+|++........+.+
T Consensus 211 ---------------------~~~~~~~~~~p~~~~~~~~~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 211 ---------------------IECVQTLDMMPADFSDTRWAADIHI-TPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred ---------------------EEEEEEEecCCCcCCCCccceeEEE-CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 0001111100 00011335777 999999998854 68999999865332222222
Q ss_pred C---CcceEEEEEcCCCCEEEEeec-CCcEEEecCC
Q 012064 384 D---RHVVNCIEPHPHSTVLASSGI-ESDIKILTPN 415 (471)
Q Consensus 384 h---~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 415 (471)
+ ......+.++|||++|+++.. +++|.+|+++
T Consensus 269 ~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 269 HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2 124568999999999887765 8999999875
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=6.1e-20 Score=147.61 Aligned_cols=205 Identities=19% Similarity=0.280 Sum_probs=154.5
Q ss_pred CCCCcEEEEecCC-------CeEEEEEcccCccccccccceecccccceeeeeeeEEec-cccccEEEEEEcCCCCEEEE
Q 012064 7 NNNNKRARTSVDK-------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 7 ~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s 78 (471)
+.+.+.|++...+ -.+.||.+....-. .....++.+..|. .|-+.|.|+.|.|++..+++
T Consensus 73 P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 73 PFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------SNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred CCCCceEEEEEeccCCCcceeeEEEEecccccCc------------cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 3345556655432 35788988733222 1122345555665 56679999999999999987
Q ss_pred ecCCCeEEEEECCCCce-EEEee----cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeE
Q 012064 79 GSDDRRVILWDWKTERV-KLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~-~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 153 (471)
-. |..|.+|+++.+.. ...+. .++....++-+|+|..+++.+++.+ |+++..||+++.++... .-..|...+
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~s-I~dAHgq~v 217 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNS-IEDAHGQRV 217 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcc-hhhhhccee
Confidence 65 67899999988766 33332 2356678889999987888888876 78999999998776543 246788999
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
..+.|+|+.+++|++|+.||.|++||.+..+. ++.+. + |...+.++.|+|...+++++|+.|..|.+|.
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--------~--HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--------G--HSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--------C--CceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 99999999999999999999999999987643 22222 2 5668999999998889999999999999998
Q ss_pred cCCC
Q 012064 233 IRKY 236 (471)
Q Consensus 233 ~~~~ 236 (471)
...-
T Consensus 288 a~sv 291 (370)
T KOG1007|consen 288 ASSV 291 (370)
T ss_pred cccc
Confidence 7653
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=1.4e-19 Score=145.61 Aligned_cols=291 Identities=14% Similarity=0.171 Sum_probs=204.1
Q ss_pred eeeEEeccccccEEEEEEcC--C-CCEEEEecC----CCeEEEEEC--CCCceEEEeecCCCcceeEEEEecCCCC----
Q 012064 52 GIYAKLDKHRGCVNTVSFNT--D-GDILISGSD----DRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDD---- 118 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~--~-g~~l~s~~~----d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~---- 118 (471)
+.+..+..+ -.+.++.||. + +.+||.|+. .+.|.|-.+ ++++.+..-...|.-+++.+.|.| +.
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiP--d~~g~~ 112 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIP--DSKGVY 112 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecC--CccccC
Confidence 344455443 4678899984 3 357888875 355666544 445554443347899999999999 54
Q ss_pred -eEEEEEeCCCeEEEEeccccCc--ceeeE-----eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc--c-e
Q 012064 119 -RSIVTCAADGQVRHAQILERGG--VETKL-----LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--T-E 187 (471)
Q Consensus 119 -~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~-~ 187 (471)
.+|++++ ..+|+|.+...+. ..... -..+..++++..|+.-.++++.+++-|-+..+||++++.. + .
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 3466554 3799999874222 11111 2345678999999998889999999999999999999733 1 1
Q ss_pred eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEE
Q 012064 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (471)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (471)
.+-. |...|..++|...+...|++.+.||.+|+||+|..+... . ...-.....+...+
T Consensus 191 QLIA----------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-I-----------IYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 191 QLIA----------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-I-----------IYEDPSPSTPLLRL 248 (364)
T ss_pred EEEe----------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-E-----------EecCCCCCCcceee
Confidence 2211 778999999999777899999999999999999865211 1 11111225678889
Q ss_pred EEcCCC-CeEEEeeC--CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeE
Q 012064 268 AFSDQS-ELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (471)
Q Consensus 268 ~~~~~~-~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (471)
+|+++. +++|+... ..|.+.|++.. ..++..+++|...
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P-------------------------------------~tpva~L~~H~a~-- 289 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVP-------------------------------------CTPVARLRNHQAS-- 289 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCC-------------------------------------CcceehhhcCccc--
Confidence 998854 67887663 37999999864 4567788999987
Q ss_pred eeeeeeeCCC-CcEEEEeeCCCeEEEEEccCCee------eEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEE
Q 012064 345 VKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGEL------IRVIEADRHVVNCIEPHPHST-VLASSGIESDIKI 411 (471)
Q Consensus 345 i~~~~~~s~~-g~~l~~g~~dg~v~iwd~~~~~~------~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~i 411 (471)
|+.++| .|. ...|+++++|..+.|||+..--. +-.+. ..+.|+.+.|+|... .++.+. ++++.|
T Consensus 290 VNgIaW-aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 290 VNGIAW-APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred ccceEe-cCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999999 664 56899999999999999965321 12222 456899999997544 666554 445444
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.1e-20 Score=171.97 Aligned_cols=299 Identities=20% Similarity=0.262 Sum_probs=210.7
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecC--CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 137 (471)
...+-..+.|+|-...++++...-.|++||.+.++.+..|..+ ....|+.+.+..-.|...+++|+.||.||||+--.
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3445677889998889999987789999999999987777322 34578888887644667899999999999997543
Q ss_pred cC-cceee--Eee-------ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 138 RG-GVETK--LLG-------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 138 ~~-~~~~~--~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
.. ..... .+. +..+.-.-++|.....+ ++++|.-..|+|||.........+... ....++
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~---------s~t~vT 1212 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYG---------SSTLVT 1212 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccC---------CCccce
Confidence 32 11110 011 11111133567766644 556666789999999988766555432 334577
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccc--eEEEEEcCCCCe-EEEee-CCc
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG--ITGLAFSDQSEL-LVSYN-DEF 283 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~-~~~ 283 (471)
++.-+..+++.+++|..||.|++||.+..... ++......|... |..+.+.++|-- |++++ +|.
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCcc------------ccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 77777666899999999999999999875422 233444455555 999999987754 77777 889
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCcee-EeeeeeeeCCCCcEEEEee
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~g~~l~~g~ 362 (471)
|++||++...... ......|.... ..+++.. +++...+|+|+
T Consensus 1281 I~~~DlR~~~~e~------------------------------------~~~iv~~~~yGs~lTal~V-H~hapiiAsGs 1323 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKET------------------------------------FLTIVAHWEYGSALTALTV-HEHAPIIASGS 1323 (1387)
T ss_pred EEEEecccCcccc------------------------------------cceeeeccccCccceeeee-ccCCCeeeecC
Confidence 9999998741111 11111111111 2677877 89999999999
Q ss_pred CCCeEEEEEccCCeeeEEecCC-------CcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 363 DCGRIFIWKKKGGELIRVIEAD-------RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
. +.|.||++ .|+.+..++.+ .+.+.+++|+|..-++|.|+.|.+|.||..+.++.
T Consensus 1324 ~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1324 A-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred c-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 8 99999998 45555555433 35689999999999999999999999999876543
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.3e-21 Score=166.50 Aligned_cols=256 Identities=18% Similarity=0.203 Sum_probs=184.9
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+..|++....|++++.||+|++|+++... ......++.+.+|.+|.++|.|+++.+.+..+.+|+.
T Consensus 298 r~l~~~~sep~lit~sed~~lk~WnLqk~~-------------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 298 RALAFHPSEPVLITASEDGTLKLWNLQKAK-------------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred hhhhcCCCCCeEEEeccccchhhhhhcccC-------------CccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 456789999999999999999999995311 1223356778899999999999999999999999999
Q ss_pred CCeEEEEECCCC---------ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 82 DRRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 82 d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
||+|+.|++... ..+...+.||.+.|+.+++++ ....|++|+.||++++|+...... ....-....+.
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999966421 123334579999999999999 888899999999999999866555 11111111223
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
...+++-.......++...-+.-.+++++.......+.... ..+......++-+.++|. ..+.+++..|+.|+++|
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~---~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA---SPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFD 517 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccC---CCcccccCccceEEecCC-CCeeEecccCCceeccc
Confidence 34555544332233333333444455555554444443322 222223345788889998 57899999999999999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
..+++.. .....|...++++++.|+|-+|++++ ++.+++|.+...
T Consensus 518 n~~~~~l---------------~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 518 NKTGKIL---------------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccccc---------------hheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9988743 33445678899999999999999998 678999998664
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=178.19 Aligned_cols=289 Identities=19% Similarity=0.263 Sum_probs=218.0
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
+.++.|.||.++|+|+.|...|.++++|+.|..++||..+++.++... .||.+.|+.++.+. ++..+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~--~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSS--NNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccch--hhhhhhhcccCceEE
Confidence 556778899999999999999999999999999999999999998888 89999999999998 888999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+|.+..+.++.. +.+|++.|++++|+|- .+.+.||++++||.+-.-...... +... ....-+.++.|
T Consensus 258 vWrl~~~~pvsv--LrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~pr--p~~~----~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 258 VWRLPDGAPVSV--LRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPR--PLKF----TEKDLVDSILF 324 (1113)
T ss_pred EEecCCCchHHH--HhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCC--CCCc----ccccceeeeec
Confidence 999999888876 8999999999999993 478899999999988221111111 1100 02234566667
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEeeC-CcEEEEec
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYND-EFIYLFTQ 289 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~-~~i~i~d~ 289 (471)
... +..+++++.|+.-..|.+..... +...+.-+..+.+-. +.+++-. -.+.+|++
T Consensus 325 ~~~-~~~f~Tgs~d~ea~n~e~~~l~~---------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 325 ENN-GDRFLTGSRDGEARNHEFEQLAW---------------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred ccc-ccccccccCCcccccchhhHhhh---------------------hccceEEEeccccccccceeeeeeeEeeeeec
Confidence 665 67889999999888887754321 112222233332322 3333333 36888888
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC-CcEEEEeeCCCeEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIF 368 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-g~~l~~g~~dg~v~ 368 (471)
..+ ...+.+.+|... +..+.+ +|- .+...+++.||...
T Consensus 383 ~~g--------------------------------------~l~H~l~ghsd~--~yvLd~-Hpfn~ri~msag~dgst~ 421 (1113)
T KOG0644|consen 383 YTG--------------------------------------QLLHNLMGHSDE--VYVLDV-HPFNPRIAMSAGYDGSTI 421 (1113)
T ss_pred ccc--------------------------------------hhhhhhcccccc--eeeeee-cCCCcHhhhhccCCCceE
Confidence 764 345666777776 556666 554 45556899999999
Q ss_pred EEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
|||+-.|.+++.+.-..+.+....||+||+.++....-|.++|.....++.
T Consensus 422 iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 422 IWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 999998887766543345677889999999999888889999998766544
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.1e-19 Score=164.55 Aligned_cols=350 Identities=14% Similarity=0.138 Sum_probs=232.4
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
..++||+++++|+|..||.|.+|.--..+.. -...+.++-|...|.+++|+++|.+|++||..
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~-----------------~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDD-----------------SETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccc-----------------cccceEEEecccccceeEEecCCceEeecccc
Confidence 4678999999999999999999985421111 01236788999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceee-Ee--------eceeeeE
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LL--------GKHQGRA 153 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~--------~~~~~~v 153 (471)
+.+.+|.+.+++ ++++..-.++|..+.++| |+.+.+....|..|.+....+....... .+ .+..+-.
T Consensus 273 ~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~--ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 273 GVLVLWQLETGK--KQFLPRLGSPILHIVVSP--DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred eEEEEEeecCCC--cccccccCCeeEEEEEcC--CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 999999999988 677777889999999999 9999999999999999887554332210 00 1123446
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcc-eeeeeeEEEEEcCCCCceEEEEe--------C
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNANLFAVAG--------S 224 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~--------~ 224 (471)
+.++++|.- +.++-.+..|.|.+||+-+...+..+.........+. .....+++++.+-. +.++++.- .
T Consensus 349 t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 349 TGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GSWMATLEARIDKFNFF 426 (792)
T ss_pred eeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ceEEEEeeeeehhhhcc
Confidence 778899944 4578889999999999999888776665444333333 35566788888877 78888763 2
Q ss_pred C--CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCC-eEEEee-CCcEEEEecCCCCCCCCCC
Q 012064 225 D--EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSE-LLVSYN-DEFIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 225 d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~l~~~~-~~~i~i~d~~~~~~~~~~~ 299 (471)
| -.+++|-......... ....+...|...+...++.+ ... ..++++ ++.+++|-+.......+..
T Consensus 427 ~~e~~LKFW~~n~~~kt~~----------L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~ 496 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFI----------LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS 496 (792)
T ss_pred CceEEEEEEEEcCCcceeE----------EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc
Confidence 2 2477887665432111 01123344555555555543 322 666665 7799999986644333211
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeec--CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC-Ce
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GE 376 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~-~~ 376 (471)
. .+. ....+ |..+ +...+| +.||..|+++ .|++|.+||..+ .+
T Consensus 497 s-----------------------------~W~-c~~i~sy~k~~--i~a~~f-s~dGslla~s-~~~~Itiwd~~~~~~ 542 (792)
T KOG1963|consen 497 S-----------------------------NWT-CKAIGSYHKTP--ITALCF-SQDGSLLAVS-FDDTITIWDYDTKNE 542 (792)
T ss_pred c-----------------------------ceE-EeeeeccccCc--ccchhh-cCCCcEEEEe-cCCEEEEecCCChhh
Confidence 0 111 11112 3333 888888 9999766655 578999999977 33
Q ss_pred eeEEecCCCcceEEEEEcCCCC--EEEEeecCCcEEEecCCCCCC
Q 012064 377 LIRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 377 ~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+.........++..+.+..... ..+.....+.+.+|++-....
T Consensus 543 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l 587 (792)
T KOG1963|consen 543 LLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL 587 (792)
T ss_pred hhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence 3333322223344444432211 222333467889999876554
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-18 Score=136.34 Aligned_cols=283 Identities=16% Similarity=0.201 Sum_probs=194.8
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCC---------CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKT---------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
...|.+-+++|.+++|+.|+.+|+|.+..+++ ++....-.++|.++|+.++|. +.+|++|+ ||.|+
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeecc-CceEE
Confidence 34567778999999999999999999998853 232222237899999999996 46777776 59999
Q ss_pred EEeccccCc-ce-----eeEeecee-----eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcc
Q 012064 132 HAQILERGG-VE-----TKLLGKHQ-----GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (471)
Q Consensus 132 iwd~~~~~~-~~-----~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (471)
-|....... .. ....+.|. -.|+++...|..+.+ +.++.|+.++-||+++++....++.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~~rG--------- 154 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQREYRG--------- 154 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEEEcC---------
Confidence 998765432 10 11112222 358899999888554 5555899999999999999988875
Q ss_pred eeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc-cCCCccceEEEEEcCCCCeEEEe
Q 012064 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
|...+.++.--.. ...+++|++||++|+||.++.+....... +..+.. ..+....|-+++-+ ..++++|
T Consensus 155 -HtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~------yk~~~~lRp~~g~wigala~~--edWlvCG 224 (325)
T KOG0649|consen 155 -HTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEP------YKNPNLLRPDWGKWIGALAVN--EDWLVCG 224 (325)
T ss_pred -Ccceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEecc------ccChhhcCcccCceeEEEecc--CceEEec
Confidence 6668888887544 34688999999999999999876543221 111112 22234456666654 4589999
Q ss_pred eCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 280 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
....+.+|.++..+ +...+.-... +..+.| +...++
T Consensus 225 gGp~lslwhLrsse--------------------------------------~t~vfpipa~---v~~v~F---~~d~vl 260 (325)
T KOG0649|consen 225 GGPKLSLWHLRSSE--------------------------------------STCVFPIPAR---VHLVDF---VDDCVL 260 (325)
T ss_pred CCCceeEEeccCCC--------------------------------------ceEEEecccc---eeEeee---ecceEE
Confidence 88899999998742 2233322111 556666 344788
Q ss_pred EeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCC-CCEEEEeecCCcEEEec
Q 012064 360 SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKILT 413 (471)
Q Consensus 360 ~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~ 413 (471)
++++...|.-|.+ +|.+....+......++..|+.. -+++-.++..+++.|+.
T Consensus 261 ~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 261 IGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred Eeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 8888889999987 56666666555556666666543 34566667777777753
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.9e-19 Score=144.88 Aligned_cols=210 Identities=21% Similarity=0.264 Sum_probs=163.1
Q ss_pred cccccEEEEEEcCCC-----CEEEEecCCCeEEEEECCCCceEEE---e-----ecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 59 KHRGCVNTVSFNTDG-----DILISGSDDRRVILWDWKTERVKLS---F-----HSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g-----~~l~s~~~d~~i~iwd~~~~~~~~~---~-----~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
.|.-+++.+-|.|+. ++|||.+. .+|+|.+...+.... . ...+..++++..|+.. +.+++.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence 588899999999986 46776543 699999874321111 1 1346678999999874 788999999
Q ss_pred CCCeEEEEeccccCc-ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeee
Q 012064 126 ADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (471)
-|-+..|||++.+.. .....+-.|..+|..++|..++..+|++.+.||.+|+||++..+-...+-..+. ...
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-------~~~ 243 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-------PST 243 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-------CCC
Confidence 999999999998732 223447889999999999998888999999999999999998765544432221 234
Q ss_pred eeEEEEEcCCCCceEEEEeCC-CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEeeCC
Q 012064 205 NLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE 282 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~ 282 (471)
+...++|++++.+++|+-..| ..|.+.|+|... .+...+.+|.+.|+.++|.|.. ..|++++|+
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------TPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------------cceehhhcCcccccceEecCCCCceeeecCCc
Confidence 678899999988998876654 469999999764 3455677899999999999975 578888877
Q ss_pred -cEEEEecCCC
Q 012064 283 -FIYLFTQDMG 292 (471)
Q Consensus 283 -~i~i~d~~~~ 292 (471)
.+.+||+...
T Consensus 310 ~qaliWDl~q~ 320 (364)
T KOG0290|consen 310 CQALIWDLQQM 320 (364)
T ss_pred ceEEEEecccc
Confidence 7999999764
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=6e-19 Score=162.31 Aligned_cols=287 Identities=13% Similarity=0.114 Sum_probs=202.9
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee----eEeeceeeeEEEEEE
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET----KLLGKHQGRAHKLAI 158 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~ 158 (471)
+.+.+|+++........ -.-...|.+++|+|+ +..+++.|..+|.|.+||++.+..... .....|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47899999876322222 245779999999996 788899999999999999988766321 223468889999999
Q ss_pred ccCCC-cEEEEEecCCeEEEEeccCCccceeeeecccCC--cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 159 EPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 159 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
..+.. .-|++++.||.|..|+++.-............. .........+++++|.|.+.+.|++|+++|.|.--+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 75431 347999999999999887655432222111111 111123456899999999899999999999988755444
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
.+... ...+.+......|.++|..+.++|=+ +++.+++|.+++||.-...
T Consensus 380 ~~~~~-------~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---------------------- 430 (555)
T KOG1587|consen 380 YTPAP-------EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---------------------- 430 (555)
T ss_pred Ccccc-------cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----------------------
Confidence 33111 01222333455678999999999965 4566666889999987631
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-cEEEEeeCCCeEEEEEccCC--eeeEEecCCCcceEEE
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGG--ELIRVIEADRHVVNCI 391 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~~ 391 (471)
..++..+..+... +++++| ||-. ..++++..||.+.+||+... .++...+-+....+.+
T Consensus 431 ---------------~~Pl~~~~~~~~~--v~~vaW-SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~ 492 (555)
T KOG1587|consen 431 ---------------ASPLLSLDSSPDY--VTDVAW-SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV 492 (555)
T ss_pred ---------------CCcchhhhhccce--eeeeEE-cCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence 2233344444443 899999 8865 46778888999999998643 4445555556677888
Q ss_pred EEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 392 EPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
.|++.|+.|+.|+..|++++|++...-
T Consensus 493 ~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred ecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 999999999999999999999997543
No 189
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.85 E-value=5.3e-18 Score=152.07 Aligned_cols=320 Identities=15% Similarity=0.131 Sum_probs=195.0
Q ss_pred EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 012064 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (471)
Q Consensus 12 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~ 91 (471)
.+++-..+|.|.+.|.++.+.+ .++......-..+.|+|||+++++++.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~---------------------~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVV---------------------ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEE---------------------EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEE---------------------EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC
Confidence 3567778999999999988776 5666544444457899999999999999999999999
Q ss_pred CCceEEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEEEeccccCcceeeEeec-----eeeeEEEEEEccCCCcE
Q 012064 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHV 165 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~ 165 (471)
+++.+.++..+ ....++++++ ||++++++. ..+.+.++|.++.+.+......+ ....+.++..+|..+.+
T Consensus 67 ~~~~v~~i~~G--~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 67 TGKVVATIKVG--GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp SSSEEEEEE-S--SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred cccEEEEEecC--CCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 99998888433 3567899999 999998765 58999999998888766532222 23467788888888655
Q ss_pred EEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCC
Q 012064 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (471)
+++.-+.+.|.+.|....+....-... .........|+|++..+++....+..+-++|.++.++......+
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~i~---------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTTIK---------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred EEEEccCCeEEEEEeccccccceeeec---------ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 555555688988898776543321111 22245678999994444455567779999999887654322211
Q ss_pred CCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEe----------eCCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 246 QPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSY----------NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~----------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
. ..|..+...+ .+|.. ...++. +.+.+.+|+...
T Consensus 214 ~-----------~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~----------------------- 258 (369)
T PF02239_consen 214 K-----------KPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA----------------------- 258 (369)
T ss_dssp S-----------SBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB-----------------------
T ss_pred c-----------cccccccccc-cCCCcceEEeeccccceecccccCCccccchhhc-----------------------
Confidence 1 1112222222 12221 112222 223333344332
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe----eCCCeEEEEEccCCeeeEEecCCC-cceE
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG----SDCGRIFIWKKKGGELIRVIEADR-HVVN 389 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g----~~dg~v~iwd~~~~~~~~~~~~h~-~~v~ 389 (471)
.+.++.+...... .-+.. +|+++++.+. .+.+.|.++|.++.+.+..+.... ..+.
T Consensus 259 ---------------wkvv~~I~~~G~g---lFi~t-hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 259 ---------------WKVVKTIPTQGGG---LFIKT-HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp ---------------TSEEEEEE-SSSS-----EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred ---------------CeEEEEEECCCCc---ceeec-CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence 3445555544433 23444 8999999987 445899999999998887775333 3599
Q ss_pred EEEEcCCCCEEEEeec--CCcEEEecCCCCCC
Q 012064 390 CIEPHPHSTVLASSGI--ESDIKILTPNAADR 419 (471)
Q Consensus 390 ~~~~s~~~~~l~s~~~--dg~i~iw~~~~~~~ 419 (471)
.+.|++||+.+..+.. ++.|.|||..+.+.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 9999999996655544 34699999998765
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-18 Score=135.28 Aligned_cols=246 Identities=15% Similarity=0.149 Sum_probs=171.6
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCe
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~ 84 (471)
+.+|.++++++|..+|.|.+..+++-. +++.....+. .+...++|.++|+.++|. ..+|++|+. |.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~----------s~sa~~~gk~-~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~ 82 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLD----------SGSAEPPGKL-KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GL 82 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhh----------ccccCCCCCc-ceeeccccCCCeeeeeee--hhheeeccC-ce
Confidence 578999999999999999999987311 1111111112 223458999999999998 457777765 99
Q ss_pred EEEEECCCCce------EEEe-ecCCC-----cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 85 VILWDWKTERV------KLSF-HSGHN-----DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 85 i~iwd~~~~~~------~~~~-~~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
|+=|.+..... +.+. ...|. ..|+++...| ..+.++.++.|+.++-||+++++.... +.+|++.
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~G~i~r~--~rGHtDY 158 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLEDGRIQRE--YRGHTDY 158 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEEEecCCeEEEEEEecCCEEEEE--EcCCcce
Confidence 99998754332 1111 11222 3688898998 666777777899999999999876655 9999999
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
+.++.-....+ .+++|++||++++||.++++.++.+...+.......-....|.+++.+.| ++++|+ ...+.+|.
T Consensus 159 vH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwh 233 (325)
T KOG0649|consen 159 VHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWH 233 (325)
T ss_pred eeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEe
Confidence 99998844442 48999999999999999999998887654433222113346778877754 777665 56799999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
++..+....+. -...+..+.|..+ .+++++ .+.+.-|.+..
T Consensus 234 Lrsse~t~vfp----------------ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 234 LRSSESTCVFP----------------IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ccCCCceEEEe----------------cccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 99876432211 1445667777654 455555 44788887754
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=2e-18 Score=141.05 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=169.8
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
++--..+|+|.+|++|+..+|.+..+..|.||.....+ ...++ +.|...|+.+.|+| ..+.|++|+.|..-++|
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap--~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAP--KSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecC--CCCceeEccCCCCcccc
Confidence 33345899999999999999999999999999876655 33444 78999999999999 99999999999999999
Q ss_pred ec-cccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 134 QI-LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 134 d~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
.. ..+...+...+..++...+++.|+|.+ +.|++|+....|.+|-++..+.-..-+.... .....|.++.|+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikk------PirStv~sldWh 155 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKK------PIRSTVTSLDWH 155 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCC------ccccceeeeecc
Confidence 98 666677777788899999999999999 5789999999999998876553211111100 144578999999
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCC---CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEe
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGST---DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d 288 (471)
|. +-+++.|+.|+..++|..--....... ..+....+-+.........+.+..+.|+|+|..|+-.+ +..+.+-|
T Consensus 156 pn-nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 PN-NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CC-cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 98 689999999999999986544332221 11111111111122224467899999999999998766 66888888
Q ss_pred cCCC
Q 012064 289 QDMG 292 (471)
Q Consensus 289 ~~~~ 292 (471)
....
T Consensus 235 a~~p 238 (361)
T KOG1523|consen 235 AAGP 238 (361)
T ss_pred cCCC
Confidence 7654
No 192
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.6e-19 Score=151.39 Aligned_cols=210 Identities=21% Similarity=0.271 Sum_probs=161.1
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-----eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeE
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-----ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 175 (471)
.+|+++|..++|+|+ ++..|++|++|.+|.||.+..+... ....+.+|...|.-++|+|...++|++++.|..|
T Consensus 78 ~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred cCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 689999999999997 7889999999999999999765442 2345889999999999999999999999999999
Q ss_pred EEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCc
Q 012064 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (471)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (471)
.+|++.+++....+. |...|.++.|+.+ |.+|++.+.|..|++||.++++....-
T Consensus 157 ~iWnv~tgeali~l~-----------hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~------------- 211 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-----------HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEG------------- 211 (472)
T ss_pred EEEeccCCceeeecC-----------CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeec-------------
Confidence 999999998877665 6668999999998 789999999999999999998865331
Q ss_pred ccCCCccceEEEEEcCCCCeEEEee----CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccccc
Q 012064 256 LIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (471)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (471)
..+....-..+.|-.+|.++.+|- +.++-+||..+-..+ .
T Consensus 212 -~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-----------------------------------~ 255 (472)
T KOG0303|consen 212 -VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-----------------------------------I 255 (472)
T ss_pred -ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-----------------------------------c
Confidence 112223445677888888665553 336999997663221 1
Q ss_pred CCeeeecCCceeEeeeeeeeCCCCcEEE-EeeCCCeEEEEEccCCe
Q 012064 332 APQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~~s~~g~~l~-~g~~dg~v~iwd~~~~~ 376 (471)
....+....+ |. +-|+++|.+.++ +|-.|+.||.|.+.+-.
T Consensus 256 ~~~elDtSnG---vl-~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 256 ALQELDTSNG---VL-LPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEeccCCc---eE-EeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 1223333332 22 345699998877 45569999999986543
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=3.3e-18 Score=157.51 Aligned_cols=277 Identities=16% Similarity=0.179 Sum_probs=189.2
Q ss_pred CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceE-
Q 012064 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVK- 96 (471)
Q Consensus 19 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~- 96 (471)
++.+.||++.....+. ..+. -...|.|+.|+|. ..++|.|..+|.|.+||+..+...
T Consensus 221 ~~~~~vW~~~~p~~Pe--------------------~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~ 279 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPE--------------------LVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP 279 (555)
T ss_pred CceEEEEecCCCCCce--------------------EEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC
Confidence 3478899988553221 2222 4678999999995 578888999999999999877651
Q ss_pred ----EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee-eEee---------ceeeeEEEEEEccCC
Q 012064 97 ----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLG---------KHQGRAHKLAIEPGS 162 (471)
Q Consensus 97 ----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~---------~~~~~v~~~~~~~~~ 162 (471)
......|..++..+.|.....+.-+++++.||.|..|+++.-..... ..+. .....+++++|.+..
T Consensus 280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 12235689999999998843445599999999999998865433111 0010 122457899999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccce--eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATE--LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
++.|+.|+++|.|.--+-...+... .++.+.. ...|.+.|+++.++|-....|++++ |-++++|......
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~----~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~--- 431 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST----FITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA--- 431 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCccccccccccccc----ccccCcceEeeecCCCccceeeeec-cceeEeccccCCC---
Confidence 9999999999999874433322221 1111111 1126778999999999666666666 9999999987321
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
.|......+...+++++|||--- .++++. +|.+.+||+.....
T Consensus 432 -----------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~------------------------ 476 (555)
T KOG1587|consen 432 -----------SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE------------------------ 476 (555)
T ss_pred -----------CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc------------------------
Confidence 23334444566699999999764 455555 77999999976421
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
.+.....-... ..+.+.| +++|+.|++|+..|.+++|++..
T Consensus 477 ------------~Pv~s~~~~~~--~l~~~~~-s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 477 ------------EPVLSQKVCSP--ALTRVRW-SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ------------CCccccccccc--ccceeec-CCCCcEEEEecCCCcEEEEEcCc
Confidence 11222221222 1445555 99999999999999999999853
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=5.4e-18 Score=139.04 Aligned_cols=322 Identities=15% Similarity=0.169 Sum_probs=217.0
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE-ecCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSDD 82 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s-~~~d 82 (471)
++|||+|+++|+.++- .+-|-|.+|-+..+ +-.--+.|.-+.|..|..+++. ...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----------------------lf~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----------------------LFLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHH----------------------HHHHHHHhhheeeeccceeeeeeeecc
Confidence 5799999999999866 78888988766552 1112466788899988876664 4668
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEE-EEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
+.|.+|++...+--..+ ..-..++..++|+| ||+.+ .+...+-.|.+|.+.+.+... ++.....+..++|+|+
T Consensus 71 ~~vqvwsl~Qpew~ckI-deg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~---~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKI-DEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL---LPHPKTNVKGYAFHPD 144 (447)
T ss_pred ceEEEEEeecceeEEEe-ccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE---ecccccCceeEEECCC
Confidence 89999999988877777 45567899999999 99554 566678899999998877654 3333445688999999
Q ss_pred CCcEEEEEec------------------------------------CCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 162 SPHVFYTCGE------------------------------------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 162 ~~~~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
|+ +.+.+++ +..+.+||---.-.+..+. ....
T Consensus 145 g~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-----------~~lG 212 (447)
T KOG4497|consen 145 GQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-----------RGLG 212 (447)
T ss_pred Cc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-----------eccc
Confidence 95 4443332 2234444422211111111 3346
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC-----------------------------CCCCC----------
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS-----------------------------TDFGQ---------- 246 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------------------~~~~~---------- 246 (471)
+..++|+|. ++++++|+.|+.+|+.+--+.+.... +++.+
T Consensus 213 ~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 213 LKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred eeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 889999998 68999999999988765322221100 00000
Q ss_pred ------------CCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC---cEEEEecCCCCCCCCCCCCCccccccccc
Q 012064 247 ------------PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE---FIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (471)
Q Consensus 247 ------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (471)
.+....|..-.....-.+.-++|++|..++++-.+. .+.+||+...+.-
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~---------------- 355 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH---------------- 355 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh----------------
Confidence 111122223333445667889999999999998876 5999999763211
Q ss_pred cCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEE
Q 012064 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCI 391 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~ 391 (471)
..+ .... .|....| +|....|+.+.....+++|.......+..- ...=.|..+
T Consensus 356 ----------------------avL-iQk~--piraf~W-dP~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l 408 (447)
T KOG4497|consen 356 ----------------------AVL-IQKH--PIRAFEW-DPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKL 408 (447)
T ss_pred ----------------------hhh-hhcc--ceeEEEe-CCCCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeE
Confidence 111 1112 2888888 998888887777788999998654444332 222469999
Q ss_pred EEcCCCCEEEEeecCCcEE
Q 012064 392 EPHPHSTVLASSGIESDIK 410 (471)
Q Consensus 392 ~~s~~~~~l~s~~~dg~i~ 410 (471)
.|.-+|..++-.+.|....
T Consensus 409 ~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 409 QWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred EecCCCcEEEEEcCCceEE
Confidence 9999999999999886533
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-18 Score=165.87 Aligned_cols=317 Identities=18% Similarity=0.187 Sum_probs=207.1
Q ss_pred eeeeeeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCc-------eEEEeecCCCcceeEEEEecCCCCe
Q 012064 48 VLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFTDDR 119 (471)
Q Consensus 48 ~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~ 119 (471)
..+..++..+..|+..|..++.+++. .+++|||.||+|++||...-. ...++ ......+.++...+ .++
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~--~~~ 1111 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCG--NGD 1111 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEecc--CCC
Confidence 34445668899999999999997765 999999999999999986421 12222 23467889999999 999
Q ss_pred EEEEEeCCCeEEEEeccccCccee-----e--EeeceeeeEEEEEEccCCCc-EEEEEecCCeEEEEeccCCccceeeee
Q 012064 120 SIVTCAADGQVRHAQILERGGVET-----K--LLGKHQGRAHKLAIEPGSPH-VFYTCGEDGLVQHFDLRTGAATELFTC 191 (471)
Q Consensus 120 ~l~s~~~dg~i~iwd~~~~~~~~~-----~--~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (471)
.+|.++.||.|++.+++..+.... . ........+..-+|...... .++.+...+.|..||++.......++.
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 999999999999999876321111 1 11112223444455444333 788889999999999999887776664
Q ss_pred cccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC
Q 012064 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (471)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (471)
.. ..+.|++++.+|. +++++.|+..|.+.+||+|-+....... ..+..++..+..+|
T Consensus 1192 ~~--------~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~--------------~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1192 QL--------RHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWE--------------HPARAPIRHVWLCP 1248 (1431)
T ss_pred Cc--------cccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeeccc--------------CcccCCcceEEeec
Confidence 43 3447999999998 7899999999999999999776443322 22345666666665
Q ss_pred C---CCeEEEee---CCcEEEEecCCCCCCCCCCCC-CccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeE
Q 012064 272 Q---SELLVSYN---DEFIYLFTQDMGLGPNPPPSS-PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (471)
Q Consensus 272 ~---~~~l~~~~---~~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (471)
- ....++++ .+.+.+|++.++.....+... ....-.... ++. . ... .....
T Consensus 1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~-----------Ps~---~-~~k-------p~~~~ 1306 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYAL-----------PSN---D-ARK-------PDSLA 1306 (1431)
T ss_pred cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhc-----------ccc---c-CCC-------CCccc
Confidence 3 34555554 346999999998655443322 000000000 000 0 000 11111
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee----------------------------------------------
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI---------------------------------------------- 378 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~---------------------------------------------- 378 (471)
.....+ ...+.++.+|+.|..||.||....+..
T Consensus 1307 ~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~ 1385 (1431)
T KOG1240|consen 1307 GISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALR 1385 (1431)
T ss_pred ceeeec-ccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcc
Confidence 222223 344568889999999999997321100
Q ss_pred --EEe--------cCCCcceEEEEEcCCC-CEEEEeecCCcEEEec
Q 012064 379 --RVI--------EADRHVVNCIEPHPHS-TVLASSGIESDIKILT 413 (471)
Q Consensus 379 --~~~--------~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~ 413 (471)
..+ ..|..+|+++++.... .+|++++.||.|+||.
T Consensus 1386 ~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1386 ENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1366788888887554 4899999999999994
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=1.6e-17 Score=138.53 Aligned_cols=239 Identities=11% Similarity=0.126 Sum_probs=178.4
Q ss_pred CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC--CeEEEEecc
Q 012064 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLR 181 (471)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~ 181 (471)
...+..+.|+. +...|..|+.|| .+++.......... .......|..+-|+.. +++..+.+ +.+++++++
T Consensus 5 ~~ti~~~~~Nq--d~~~lsvGs~~G-yk~~~~~~~~k~~~--~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQ--DSTLLSVGSKDG-YKIFSCSPFEKCFS--KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred Ccceeeeeecc--ceeEEEccCCCc-eeEEecCchHHhhc--ccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcc
Confidence 34566677888 888888888887 47777655443211 1222334555666653 45554444 459999998
Q ss_pred CCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCc
Q 012064 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (471)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (471)
.+..+..+. ....|.++.++.+ +|+++-++. |++||+++.++...... ...+.
T Consensus 77 k~~~ICe~~-----------fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t------------~~~n~ 129 (391)
T KOG2110|consen 77 KKTTICEIF-----------FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIET------------TPPNP 129 (391)
T ss_pred cCceEEEEe-----------cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhc------------cCCCc
Confidence 888777665 4457899999864 566555544 99999999987655322 22234
Q ss_pred cceEEEEEcCCCCeEEEee---CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec
Q 012064 262 VGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (471)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (471)
..+..+++++++.+|+.-+ .|.|.+||..+ ......+..
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--------------------------------------l~~v~~I~a 171 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--------------------------------------LQPVNTINA 171 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEccc--------------------------------------ceeeeEEEe
Confidence 5577777777788888654 56899999977 456778889
Q ss_pred CCceeEeeeeeeeCCCCcEEEEeeCCCe-EEEEEccCCeeeEEecCCC--cceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEADR--HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 339 ~~~~~~i~~~~~~s~~g~~l~~g~~dg~-v~iwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
|.+. +.+++| +++|.+||++++.|+ ||||.+.+|+.+.+++-.. ..|.+++|+||+++|++.|..++|+|+.++
T Consensus 172 H~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 172 HKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9987 999999 999999999999987 7899999999999886543 468999999999999999999999999998
Q ss_pred CCC
Q 012064 416 AAD 418 (471)
Q Consensus 416 ~~~ 418 (471)
...
T Consensus 249 ~~~ 251 (391)
T KOG2110|consen 249 KVS 251 (391)
T ss_pred ccc
Confidence 755
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.3e-17 Score=141.51 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=138.2
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (471)
.+++|+++ +..+++++.||++|+|+...... ......|...|.++.|+|||++|++.+.+..++
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t---------------~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLT---------------ILEEIAHHAEVKDLDFSPDGKFLASIGADSARV 211 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchh---------------hhhhHhhcCccccceeCCCCcEEEEecCCceEE
Confidence 78999998 68999999999999999765542 223445678899999999999999999779999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCC--ccCCCC---CCccc------------ccCCeeeecCCceeEeeeee
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS--AASPST---ANTDV------------RIAPQVYKGHRNCVTVKGVN 349 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~------------~~~~~~~~~~~~~~~i~~~~ 349 (471)
|+.+++..............-...-++.++.. +..... .+... ....+....+. .|.+++
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~---siSsl~ 288 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK---SISSLA 288 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC---cceeEE
Confidence 99999865544432222222222333333311 111110 00000 01111111222 388999
Q ss_pred eeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe-cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 350 ~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
. ++||+++|.|+.||.|-|++..+.+.+.-. +.|...|+.+.|+||.+++++.+.|....+..+.....
T Consensus 289 V-S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 289 V-SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKT 358 (398)
T ss_pred E-cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeeccc
Confidence 8 999999999999999999999888777555 56999999999999999999999999999998876433
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=7.8e-17 Score=134.43 Aligned_cols=237 Identities=14% Similarity=0.139 Sum_probs=170.9
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
..|+.+...|..|+.|| -++++.+.-... .......-.|..+-||.+---++....-+
T Consensus 11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---------------------~~~~~~~~~IvEmLFSSSLvaiV~~~qpr 68 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---------------------FSKDTEGVSIVEMLFSSSLVAIVSIKQPR 68 (391)
T ss_pred eeeccceeEEEccCCCc-eeEEecCchHHh---------------------hcccCCCeEEEEeecccceeEEEecCCCc
Confidence 44788888999999998 567777632221 11222344566777775433333333335
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEee-ceeeeEEEEEEccCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQGRAHKLAIEPGS 162 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 162 (471)
.+++.+++.+..+..+ ....+|.++.++ .+.|+++-.+. |.|||+++.+...+.... .+...+.++++++.+
T Consensus 69 ~Lkv~~~Kk~~~ICe~--~fpt~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEI--FFPTSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred eEEEEEcccCceEEEE--ecCCceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence 6999999988888877 356689999995 46777777654 999999998876653222 455667777777776
Q ss_pred CcEEEEEe-cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCe-EEEEEcCCCccCC
Q 012064 163 PHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-TRLYDIRKYKWDG 240 (471)
Q Consensus 163 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~ 240 (471)
.++.+-++ ..|.|.+||..+-+.+..+.. |.+.+.+++|+|+ |.+||++++.|+ ||+|.+.+++...
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a----------H~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTINLQPVNTINA----------HKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred ceEEecCCCCCceEEEEEcccceeeeEEEe----------cCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEee
Confidence 44444333 358999999999998888876 7778999999999 799999999997 6899998887543
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
++. ..-....|.+++|+|++++|++.+ .++|++|.++...
T Consensus 211 eFR-------------RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 211 EFR-------------RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eee-------------CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 211 111245689999999999998877 5699999998754
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=1.8e-18 Score=160.63 Aligned_cols=237 Identities=11% Similarity=0.130 Sum_probs=160.3
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
+..|.+||..... ...+ ..|...+.+++|+| ||+.|+.++.+ ..|++||+.+++......+.+ ....++|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeE
Confidence 4789999986554 3444 56788899999999 99999887654 369999998765433222333 3446899
Q ss_pred ccCCCcEEEEEecCCeEEEE--eccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 159 EPGSPHVFYTCGEDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
+|++..++++.+.+|.+.+| |+.+++... +.. +...+....|+||+..+++++..+|...+|++...
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~----------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS----------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc----------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99996555555677765554 666654332 221 22346789999995444555556788888887543
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
... .... .+.. ....|+|+|++|+..+.+.+.+||+.++...
T Consensus 325 ~~~--------------~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~--------------------- 366 (429)
T PRK01742 325 GGG--------------ASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTE--------------------- 366 (429)
T ss_pred CCC--------------eEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeE---------------------
Confidence 210 0111 1122 3568999999998887777888998765211
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc--CCeeeEEecCCCcceEEEEEc
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK--GGELIRVIEADRHVVNCIEPH 394 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~--~~~~~~~~~~h~~~v~~~~~s 394 (471)
.+..... .....| +|||++|+.++.+|.+.+|++. +|+.+..+..|.+.+..++|+
T Consensus 367 ------------------~lt~~~~---~~~~~~-sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 367 ------------------VLSSTFL---DESPSI-SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred ------------------EecCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 1111101 234566 9999999999999988888753 578888898888889999999
Q ss_pred CC
Q 012064 395 PH 396 (471)
Q Consensus 395 ~~ 396 (471)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=166.25 Aligned_cols=273 Identities=15% Similarity=0.191 Sum_probs=202.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.|+|...|.++++|++|..++||..+++.++ ....||.+.|+.++.+....++|+++.|
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~et~~~l---------------------As~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSMETARCL---------------------ASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred eeeeccccceEeecCccceeeeeeccchhhh---------------------ccCCCCccccchhccchhhhhhhhcccC
Confidence 3678899999999999999999999999988 6889999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc-ccCcceeeEee-ceeeeEEEEEEcc
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL-ERGGVETKLLG-KHQGRAHKLAIEP 160 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~~~v~~~~~~~ 160 (471)
..|++|-+.++.++..+ .+|++.|++++|+|. .+.+.||++++||.+ .........+. ...+-+.++.|..
T Consensus 254 ~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred ceEEEEecCCCchHHHH-hccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccc
Confidence 99999999999987666 899999999999992 377889999999987 11111101111 1224566677777
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
.+ .-+.+++.|+.-..|.+........ .+.-+.++.+-..+.+++-.+-.+.+|++.++++
T Consensus 327 ~~-~~f~Tgs~d~ea~n~e~~~l~~~~~----------------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-- 387 (1113)
T KOG0644|consen 327 NG-DRFLTGSRDGEARNHEFEQLAWRSN----------------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-- 387 (1113)
T ss_pred cc-cccccccCCcccccchhhHhhhhcc----------------ceEEEeccccccccceeeeeeeEeeeeecccchh--
Confidence 77 4579999999888887654322111 1111222223235677777888899999998864
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE-E-eeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV-S-YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
.+...+|...+..+.++|-+..++ + +.+|...|||+..+....
T Consensus 388 -------------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik---------------------- 432 (1113)
T KOG0644|consen 388 -------------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK---------------------- 432 (1113)
T ss_pred -------------hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce----------------------
Confidence 344566788899999999766554 3 348899999998763222
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
..+.+|.. +....| |+||..++....-|.++|.....++
T Consensus 433 ---------------~y~~gh~k---l~d~kF-Sqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 433 ---------------HYFIGHGK---LVDGKF-SQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ---------------eeecccce---eecccc-CCCCceEecCCCCCceEEeccCCCc
Confidence 12233332 666777 9999999998888999998765443
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=8.3e-18 Score=137.97 Aligned_cols=337 Identities=14% Similarity=0.173 Sum_probs=202.1
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEE-EeCCCeEEEEeccccCcceee
Q 012064 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQVRHAQILERGGVETK 144 (471)
Q Consensus 66 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~ 144 (471)
-+.|||+|+++|+++.- .+.|-|.++-+....+. .-..|..+.|.. |..+++. ...++.|.+|++...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~ck- 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYCK- 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeec--cceeeeeeeeccceEEEEEeecceeEEE-
Confidence 36799999999999875 78888988766543331 245677889988 7776665 46688999999988887665
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
+......+..++|+|+|.+++.+...+-.|.+|.+.+.+.....- ....+..++|+|| +++.+..+.
T Consensus 87 -Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-----------pK~~~kg~~f~~d-g~f~ai~sR 153 (447)
T KOG4497|consen 87 -IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-----------PKTNVKGYAFHPD-GQFCAILSR 153 (447)
T ss_pred -eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-----------cccCceeEEECCC-Cceeeeeec
Confidence 667778899999999998888999999999999998876543221 2224577788887 566655543
Q ss_pred CCe---EEE-----------EEcCCCccCCCCCCCCCCC-----cCCC-Ccc-cCCCccceEEEEEcCCCCeEEEee-CC
Q 012064 225 DEY---TRL-----------YDIRKYKWDGSTDFGQPAD-----YFCP-PNL-IGDEQVGITGLAFSDQSELLVSYN-DE 282 (471)
Q Consensus 225 dg~---i~i-----------~d~~~~~~~~~~~~~~~~~-----~~~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~~ 282 (471)
-.. +.+ +++.+..+.+ ..+.+... ..+. ..+ .-+..-.+..++|+|.+++|+.|+ |+
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~Dltg-ieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTG-IEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccC-ceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccch
Confidence 211 111 1111111000 00000000 0000 000 111134688899999999999998 55
Q ss_pred cEEEEecCCCCCCCCCCC-----------------CCccccccccccCCCCCCccCCCCC--Ccccc---cCCeeeec--
Q 012064 283 FIYLFTQDMGLGPNPPPS-----------------SPVSTRSEASEMGSDHTSAASPSTA--NTDVR---IAPQVYKG-- 338 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~-- 338 (471)
.+++.+--+-+....+-. .+........++.+.+......... ..+.. .....++.
T Consensus 233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t 312 (447)
T KOG4497|consen 233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT 312 (447)
T ss_pred hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence 677655433222211111 0011111111111111111110000 00000 01111110
Q ss_pred --CCceeEeeeeeeeCCCCcEEEEeeCC--CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 339 --HRNCVTVKGVNFFGPKCEYVVSGSDC--GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 339 --~~~~~~i~~~~~~s~~g~~l~~g~~d--g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
......+--++| ++|..|+++-.+. ..+.+||++..++...+. ...+|....|+|....|+.+....++++|.+
T Consensus 313 D~pnPk~g~g~laf-s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 313 DFPNPKCGAGKLAF-SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred CCCCcccccceeee-cCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 001122667888 9999999987654 789999998777655553 4568999999999998888887888999999
Q ss_pred CCCCCcccCc
Q 012064 415 NAADRATLPT 424 (471)
Q Consensus 415 ~~~~~~~~~~ 424 (471)
........+.
T Consensus 391 sg~~~V~vP~ 400 (447)
T KOG4497|consen 391 SGPRVVGVPK 400 (447)
T ss_pred CCceEEecCC
Confidence 8765544443
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-17 Score=156.97 Aligned_cols=296 Identities=14% Similarity=0.166 Sum_probs=198.9
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecc---ccccEEEEEEcC--CCCEEEE
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HRGCVNTVSFNT--DGDILIS 78 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~~~~s~--~g~~l~s 78 (471)
+.|+|=...++++.+...|++||.+.++++. .+.. ....|+.+.+-. |..+|++
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~---------------------~F~n~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLN---------------------GFDNGAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceec---------------------cccCCCCCCCccceeeeecccchhheee
Confidence 4567777889999888999999999888762 3332 246788888844 4578999
Q ss_pred ecCCCeEEEEEC-CCC----ceEEEe------ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEee
Q 012064 79 GSDDRRVILWDW-KTE----RVKLSF------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG 147 (471)
Q Consensus 79 ~~~d~~i~iwd~-~~~----~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 147 (471)
|+.||.|+||+- ..+ +.+... ..+..+.-.-+.|.. ...+|+++++-..|+|||.......... ..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r~IRIWDa~~E~~~~di-P~ 1205 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTGDVRSIRIWDAHKEQVVADI-PY 1205 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecCCeeEEEEEecccceeEeec-cc
Confidence 999999999963 222 222111 011111123456777 6667777776789999998765554432 23
Q ss_pred ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCe
Q 012064 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (471)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (471)
+....++++.-+..+.+++++|..||.+++||.+........... +.|....+|..+.+.+.|-..|++|+.+|.
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-----R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-----REHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-----cccCCcccceeEEeecCCCcceeeeccCCe
Confidence 355667777766544478999999999999999876553222211 111122348899999875456999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCC--ccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccc
Q 012064 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (471)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 305 (471)
|++||++....... .....+. .+..+++..+++...+|+|+...|+||++........ .
T Consensus 1281 I~~~DlR~~~~e~~------------~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~-k------ 1341 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETF------------LTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNII-K------ 1341 (1387)
T ss_pred EEEEecccCccccc------------ceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhccc-c------
Confidence 99999998532211 1111111 1248999999999999999999999999876432111 0
Q ss_pred cccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
.-..|.+... ..+.|++| +|..-++|+|+.|..|.||.....
T Consensus 1342 --------------------------~n~~F~~q~~-gs~scL~F-HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 --------------------------YNPGFMGQRI-GSVSCLAF-HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred --------------------------cCcccccCcC-CCcceeee-cchhHhhhhccCCceEEEeecCCc
Confidence 0111111111 12689998 999999999999999999987554
No 203
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=5e-18 Score=142.51 Aligned_cols=206 Identities=18% Similarity=0.223 Sum_probs=157.6
Q ss_pred CCCCCC-CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC-CEEEEec
Q 012064 3 DASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGS 80 (471)
Q Consensus 3 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~ 80 (471)
++.+.| +...||+|++|.+|.||++..+.+... -.+.+..|.||+..|--++|+|.. +.|++++
T Consensus 86 Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 86 DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred ccccCccCCceeecCCCCceEEEEECCCcccccC--------------cccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 345555 556799999999999999987665531 115567899999999999999965 7889999
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee-eEEEEEEc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-RAHKLAIE 159 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~ 159 (471)
.|.+|.+||+.+|+.+.++ .|...|+++.|+. ||.+|++.+.|..|||||.++++.+... .+|.+ .-....|.
T Consensus 152 ~Dn~v~iWnv~tgeali~l--~hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~--~~heG~k~~Raifl 225 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITL--DHPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEG--VAHEGAKPARAIFL 225 (472)
T ss_pred CCceEEEEeccCCceeeec--CCCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeec--ccccCCCcceeEEe
Confidence 9999999999999988887 4999999999999 9999999999999999999998887653 45654 33456677
Q ss_pred cCCCcEEEEE---ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 160 PGSPHVFYTC---GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 160 ~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
.++. ++-+| ..+..+-+||..+-+....+... . ....|.---|+|+.+-+.++|-.|+.|+.|.+...
T Consensus 226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el--D------tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL--D------TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccCc-eeeeccccccccceeccCcccccCcceeEEe--c------cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 7774 44443 24678999998765543222211 1 23345556678885555567778999999999875
Q ss_pred c
Q 012064 237 K 237 (471)
Q Consensus 237 ~ 237 (471)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 4
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.5e-18 Score=147.19 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=151.9
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
++|+.+|..+++|+.||++|||+....... .....|.+.|.++.|||||++|++-+.|
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------l~e~~~~~eV~DL~FS~dgk~lasig~d- 207 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------LEEIAHHAEVKDLDFSPDGKFLASIGAD- 207 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhh---------------------hhhHhhcCccccceeCCCCcEEEEecCC-
Confidence 678999999999999999999997755544 4567899999999999999999999999
Q ss_pred eEEEEECCCCceEEEee-cCCCcceeEEEEecCCCC---eEEE--EEeCCCeEEEEeccccCcc---eeeEeeceeeeEE
Q 012064 84 RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDD---RSIV--TCAADGQVRHAQILERGGV---ETKLLGKHQGRAH 154 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~---~~l~--s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~ 154 (471)
..+||+..+|..+.+.. ..-......+.|+. |+ .+++ ....-+.|+.|++...+.- +..........|.
T Consensus 208 ~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 208 SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence 89999999997766553 23344566788887 66 3332 3333456777776543331 1111222345799
Q ss_pred EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 155 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
+++++++| ++++.|+.||.|.+++..+.+..+..+.. |..-|+.+.|+|+ .+++++.+.+....+..+.
T Consensus 286 sl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~a---------H~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 286 SLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQYVKEA---------HLGFVTGLTFSPD-SRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eEEEcCCC-cEEEEeccCCcEEEEEeceeeeeEeehhh---------heeeeeeEEEcCC-cCcccccccCCceeEEEEe
Confidence 99999999 68999999999999999888877665432 6778999999999 7889888888888888876
Q ss_pred CC
Q 012064 235 KY 236 (471)
Q Consensus 235 ~~ 236 (471)
-.
T Consensus 355 vd 356 (398)
T KOG0771|consen 355 VD 356 (398)
T ss_pred ec
Confidence 53
No 205
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.80 E-value=3.9e-17 Score=134.85 Aligned_cols=272 Identities=15% Similarity=0.235 Sum_probs=182.2
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce----EEEeecCC------------CcceeEEEEecCCCCeEEEEE
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGH------------NDNVFQAKIMPFTDDRSIVTC 124 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~ 124 (471)
.+-|.++.|..+|.+||||..+|.|.++.-..... .....+.| ...|..+.|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46789999999999999999999999996543221 22222333 346888999985555677788
Q ss_pred eCCCeEEEEeccccCcce------------------e----------------eEeeceeeeEEEEEEccCCCcEEEEEe
Q 012064 125 AADGQVRHAQILERGGVE------------------T----------------KLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 125 ~~dg~i~iwd~~~~~~~~------------------~----------------~~~~~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
..|.+|++|.+....... . ..-..|+..|.+++++.|.. . +.+.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t-~lSA 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-T-FLSA 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-e-Eeec
Confidence 889999999986543221 0 00125788899999999985 3 4456
Q ss_pred cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC-C-CCCCC
Q 012064 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST-D-FGQPA 248 (471)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~ 248 (471)
.|-.|.+|+++-......+.-.++...+. -..-|++..|+|..-+.|+-.+..|+|++.|+|...+-... + +..|.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEe--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 78899999987554333222222211111 22357889999998889999999999999999965432211 1 11111
Q ss_pred CcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcc
Q 012064 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (471)
+ ......+..--..|..+.|+++|+++++-.--++++||+.....
T Consensus 261 d-p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~---------------------------------- 305 (433)
T KOG1354|consen 261 D-PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK---------------------------------- 305 (433)
T ss_pred C-CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC----------------------------------
Confidence 1 11122233334568899999999999998888999999965421
Q ss_pred cccCCeeeecCC-------------ceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 329 VRIAPQVYKGHR-------------NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 329 ~~~~~~~~~~~~-------------~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
++..++-|. ....-..++| +.++.++++|+.....++|++..|
T Consensus 306 ---pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~-sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 306 ---PVETYPVHEYLRSKLCSLYENDAIFDKFECSW-SGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ---cceEEeehHhHHHHHHHHhhccchhheeEEEE-cCCcceEecccccceEEEecCCCC
Confidence 122222221 1111345677 889999999999999999996554
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=1e-16 Score=153.01 Aligned_cols=267 Identities=13% Similarity=0.055 Sum_probs=168.5
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+..++.+.++++|+.||+||+||...-..- . ...+...++..-...+.++...+.++.+|.++.||
T Consensus 1055 a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------------~--~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1055 AVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------------G--GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eecCCCCceEEEecCCceEEEeeehhhhcC------------c--ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 456677799999999999999998732111 0 11222234444578899999999999999999999
Q ss_pred eEEEEECCCCceEE------EeecC-CCccee-EEEEecCCCCe-EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEE
Q 012064 84 RVILWDWKTERVKL------SFHSG-HNDNVF-QAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (471)
Q Consensus 84 ~i~iwd~~~~~~~~------~~~~~-~~~~v~-~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 154 (471)
.|++.+++..+... ..... ..+.+. .-+|.. ..+. .++.+...+.|..||++......+....-..+.|+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccc-cccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 99999987521100 11111 223333 334433 1334 67778888999999998877655544555568899
Q ss_pred EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC--ceEEEE-e-CCCeEEE
Q 012064 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVA-G-SDEYTRL 230 (471)
Q Consensus 155 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~-~-~dg~i~i 230 (471)
+++.+|.+ +.++.|+..|.+.+||++-+.++...... +..++..+..+|--+ ...+++ . ..+.|.+
T Consensus 1200 Si~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P---------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1200 SIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHP---------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred EEEecCCc-eEEEEecCCceEEEEEeecCceeecccCc---------ccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 99999999 59999999999999999998877665432 335667776666422 344444 3 5778999
Q ss_pred EEcCCCccCCCCCCC--C-CCCcCCCCc--ccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCC
Q 012064 231 YDIRKYKWDGSTDFG--Q-PADYFCPPN--LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~--~-~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~ 295 (471)
|++.++.....+-.+ . ..+...|.. .....-..+.+.--.+++-.+.++++..|+.||.......
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999987533222111 1 111111111 0011112223333334443444455779999998775443
No 207
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.1e-17 Score=140.92 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=135.3
Q ss_pred cccEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceE--------EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVK--------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 61 ~~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
..+|..+.|.+... .||||+.|..|++|-+..++.- ...+..|...|+++.|+| +|+.|++|+++|.+.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceEE
Confidence 47899999998776 9999999999999988654321 122478999999999999 999999999999999
Q ss_pred EEecc--------c------cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc
Q 012064 132 HAQIL--------E------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (471)
Q Consensus 132 iwd~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (471)
+|... + ...+..+.+.+|...|..++|+|++ .++++++-|..+++||+..++....+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~d------ 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDD------ 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccc------
Confidence 99876 1 1234445678899999999999999 5789999999999999999988777654
Q ss_pred CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
|...+..++|.|- .+++++-+.|...+.+++...+
T Consensus 164 ----h~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 164 ----HEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ----cccccceeecchh-hhhhhhhccCcccceeeeeeee
Confidence 5668999999998 6899999999877777776543
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=9.7e-18 Score=133.36 Aligned_cols=283 Identities=17% Similarity=0.184 Sum_probs=184.0
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec-cccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
.+|.+|..-|.+++|++++.+.. -.+. .|...|+.+.--|+ ..|.+-+.|+.+.+|+
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~---------------------~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDL---------------------PLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred hhhhcccccceEEEEEeecCccc---------------------hhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 34899999999999999977665 2455 57788999998887 5688889999999999
Q ss_pred CCCCceEEEeecCCCcceeEEEEecCC---CC----eEEEEEeCCC-eEEEEeccccCccee--eEeeceeeeEEEEEEc
Q 012064 90 WKTERVKLSFHSGHNDNVFQAKIMPFT---DD----RSIVTCAADG-QVRHAQILERGGVET--KLLGKHQGRAHKLAIE 159 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~----~~l~s~~~dg-~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~ 159 (471)
+..+..+ ..|.-.++++.|.+++ .+ ..++.-++.. .+.+-|......++. ..-....+.+.+..+.
T Consensus 84 ia~s~~i----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAFI----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcceE----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9865542 2344566666666521 11 1111111100 011111111111100 0011233456666643
Q ss_pred cC-C-CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 160 PG-S-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 160 ~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
.+ + ..++++|.++|.+.+||+.++..+-.+........+...+..++.++.+.+. -..=++|+.+..+..|++....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeecccc
Confidence 22 2 2356678889999999999984443332222222222336778999999876 4555678888889999887542
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
..- .......-.+-.+..+..-||++.+|+++ |+.|++|..++.
T Consensus 239 gsl-----------q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl------------------------ 283 (323)
T KOG0322|consen 239 GSL-----------QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL------------------------ 283 (323)
T ss_pred Ccc-----------cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC------------------------
Confidence 100 01111222244588899999999999999 668999998873
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
.++..+.-|... |++++| +|+...+|+++.|+.|.+|++
T Consensus 284 --------------~pLAVLkyHsag--vn~vAf-spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 --------------NPLAVLKYHSAG--VNAVAF-SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --------------Cchhhhhhhhcc--eeEEEe-CCCCchhhhccCCceEEeeec
Confidence 456667778765 999999 999999999999999999986
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=145.70 Aligned_cols=203 Identities=14% Similarity=0.234 Sum_probs=153.1
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~ 90 (471)
..++.++.||.+.|-+-. |+.- +....|.+.|.|-.|+|||.-|+++|.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE---------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS- 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVE---------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS- 132 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhh---------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-
Confidence 457788889999988865 5443 67889999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe
Q 012064 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
.+|-. +........+|+|++|.| +.+.++.|.. +.+.|=-+.-+..+.. ...|.+-|.++.|++.. .++++|+
T Consensus 133 rsGML-RStl~Q~~~~v~c~~W~p--~S~~vl~c~g-~h~~IKpL~~n~k~i~--WkAHDGiiL~~~W~~~s-~lI~sgG 205 (737)
T KOG1524|consen 133 RSGML-RSTVVQNEESIRCARWAP--NSNSIVFCQG-GHISIKPLAANSKIIR--WRAHDGLVLSLSWSTQS-NIIASGG 205 (737)
T ss_pred ccchH-HHHHhhcCceeEEEEECC--CCCceEEecC-CeEEEeecccccceeE--EeccCcEEEEeecCccc-cceeecC
Confidence 44544 333345677999999999 7777776654 3566655554444433 88999999999999998 6899999
Q ss_pred cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCc
Q 012064 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (471)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (471)
+|-..++||-...... .-.. +..+|++++|+|+ ..++.++.+ ++++ ..
T Consensus 206 ED~kfKvWD~~G~~Lf-~S~~----------~ey~ITSva~npd--~~~~v~S~n-t~R~---~~--------------- 253 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLF-TSAA----------EEYAITSVAFNPE--KDYLLWSYN-TARF---SS--------------- 253 (737)
T ss_pred CceeEEeecccCcccc-cCCh----------hccceeeeeeccc--cceeeeeee-eeee---cC---------------
Confidence 9999999996543322 1111 5668999999998 456666543 4442 11
Q ss_pred CCCCcccCCCccceEEEEEcCCCCeEEEee-CCc
Q 012064 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (471)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (471)
...+.|..++|++||..++++. .|.
T Consensus 254 --------p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 254 --------PRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred --------CCccceEEEEEcCCCceeeccccCce
Confidence 1246799999999999988876 444
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=144.03 Aligned_cols=306 Identities=18% Similarity=0.236 Sum_probs=215.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC--CCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~--g~~l~s~ 79 (471)
+-+.|+..|..|++|++|..|.+||...+.... .-..||...|....|-|. ...++++
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l--------------------~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL--------------------SFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhccCccc--------------------ccccccccchhhhhccCCCCCcCceec
Confidence 346789999999999999999999999777653 344689999999999884 4689999
Q ss_pred cCCCeEEEEECCC-CceE-EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee-e---eE
Q 012064 80 SDDRRVILWDWKT-ERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-G---RA 153 (471)
Q Consensus 80 ~~d~~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~---~v 153 (471)
+.||.+++=.+.. +.+. ...+..|.++|..++.-|. ....|.+++.|+.+.-+|++............+. . ..
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred cccCceeeeeeccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence 9999999876643 3322 2233679999999999983 4567899999999999999877665443332222 2 46
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCccc------eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCe
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT------ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (471)
.+++..|.+.+.+++++.|..+++||.+.-... ..+..... .. .....|++++|+.+++.++ ++..|-.
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl---~~-d~~v~ITgl~Ysh~~sElL-aSYnDe~ 359 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL---VE-DDPVNITGLVYSHDGSELL-ASYNDED 359 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc---cc-cCcccceeEEecCCcccee-eeecccc
Confidence 889999999889999999999999998754332 11111111 11 2456799999998855555 4567778
Q ss_pred EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCc--cceEEEEE-cCCCCeEEEeeC-CcEEEEecCCCCCCCCCCCCCc
Q 012064 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ--VGITGLAF-SDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPV 303 (471)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~-~~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~ 303 (471)
|+++.-..+. .....-..+.+. ..+....+|. ..|..+-| -|...|+++|+| |.|.+|+..++
T Consensus 360 IYLF~~~~~~-G~~p~~~s~~~~-~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~----------- 426 (559)
T KOG1334|consen 360 IYLFNKSMGD-GSEPDPSSPREQ-YVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG----------- 426 (559)
T ss_pred eEEecccccc-CCCCCCCcchhh-ccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-----------
Confidence 9999433322 111111111111 1222233443 34677765 578899999995 58999998774
Q ss_pred cccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
+.++.+.+.... |+|+.- +|---.||+.+-|..|+||--.+.+
T Consensus 427 ---------------------------eii~~MegDr~V--VNCLEp-HP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 427 ---------------------------EIIRFMEGDRHV--VNCLEP-HPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ---------------------------HHHHHhhcccce--EeccCC-CCCCchhhccCCccceeeecCCccc
Confidence 445555555553 899987 8999999999999999999864433
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=3.9e-17 Score=142.53 Aligned_cols=208 Identities=16% Similarity=0.242 Sum_probs=157.7
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeE
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 153 (471)
..|+.++.||.+.+-+ +.++....+ ..|.+.+.+-.|+| ||.-|+++++||.|++|.- ++-.. ..+.....+|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLR--Stl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLR--STVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHH--HHHhhcCcee
Confidence 5788889999999987 456655555 78999999999999 9999999999999999984 22222 2255677899
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (471)
.|++|.|+..+++++.+ +.+.+=.+.....+-..+. |.+-|.++.|+|. .+++++|++|-..++||-
T Consensus 149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA----------HDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA----------HDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA 215 (737)
T ss_pred EEEEECCCCCceEEecC--CeEEEeecccccceeEEec----------cCcEEEEeecCcc-ccceeecCCceeEEeecc
Confidence 99999999987766554 4555554444433333332 7778999999999 689999999999999998
Q ss_pred CCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccC
Q 012064 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (471)
....+ .....|.-+|++++|+|+ +.++.++-++.++=..+.
T Consensus 216 ~G~~L----------------f~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~---------------------- 256 (737)
T KOG1524|consen 216 QGANL----------------FTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV---------------------- 256 (737)
T ss_pred cCccc----------------ccCChhccceeeeeeccc-cceeeeeeeeeeecCCCc----------------------
Confidence 65432 223346788999999999 777777766666222211
Q ss_pred CCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
+ .|..++| |+||..+++|...|.+.+=
T Consensus 257 ---------------------------G--SifnlsW-S~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 257 ---------------------------G--SIFNLSW-SADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------------------c--ceEEEEE-cCCCceeeccccCceEEEe
Confidence 1 3889999 9999999999999987653
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.9e-17 Score=150.57 Aligned_cols=211 Identities=11% Similarity=0.087 Sum_probs=140.6
Q ss_pred CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC---CeEEEEECCCCce
Q 012064 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKTERV 95 (471)
Q Consensus 19 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~ 95 (471)
+..|.+||.+... . +.+..|...+.+.+|||||+.|+..+.+ ..|++||+.+++.
T Consensus 183 ~~~i~i~d~dg~~-~---------------------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~ 240 (429)
T PRK01742 183 PYEVRVADYDGFN-Q---------------------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR 240 (429)
T ss_pred eEEEEEECCCCCC-c---------------------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce
Confidence 4799999987333 3 4567788899999999999999987653 4799999988764
Q ss_pred EEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEEE--eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC
Q 012064 96 KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHA--QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172 (471)
Q Consensus 96 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 172 (471)
.. + ....+....++|+| ||+.|+.++ .+|.+.|| |+.++.. ..+..+...+....|+|+++.+++++..+
T Consensus 241 ~~-l-~~~~g~~~~~~wSP--DG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 241 KV-V-ASFRGHNGAPAFSP--DGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred EE-E-ecCCCccCceeECC--CCCEEEEEEecCCcEEEEEEECCCCCe---EeeccCCCCcCCEEECCCCCEEEEEECCC
Confidence 22 2 12223345789999 999888764 67876666 4444332 22555666788899999997666666678
Q ss_pred CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCC
Q 012064 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (471)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (471)
+...+|+++.......... +.. ....|+|+ +..++..+.++ +..||+.+++...
T Consensus 314 g~~~I~~~~~~~~~~~~l~----------~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~------------ 367 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVG----------GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEV------------ 367 (429)
T ss_pred CCceEEEEECCCCCeEEec----------CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEE------------
Confidence 8888888754322111110 111 34679999 56777766654 6669998764210
Q ss_pred CCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEec
Q 012064 253 PPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (471)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~ 289 (471)
+... .....+.|+|+|++|+.++ ++...+|++
T Consensus 368 ---lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 368 ---LSST--FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ---ecCC--CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 0000 0124578999999998877 556666654
No 213
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.6e-15 Score=133.52 Aligned_cols=317 Identities=11% Similarity=0.119 Sum_probs=206.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec--
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS-- 80 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~-- 80 (471)
..+++++|+++|.+. +..++|++..++..+. +.. ...+.++.|||.|.+|.+--
T Consensus 39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~l---------------------t~~--~~~~~~L~fSP~g~yL~T~e~~ 94 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSD-NQVVKVFEIATLKVVL---------------------CVE--LKKTYDLLFSPKGNYLLTWEPW 94 (566)
T ss_pred eEEEcCCCcEEEEEc-CCeEEEEEccCCcEEE---------------------Eec--cceeeeeeeccccccccccccc
Confidence 456788888777765 7789999988765331 111 12688999999999987521
Q ss_pred ---C-----CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 81 ---D-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 81 ---~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
. .-.+.+|+++++.....+....... ++..|++ |..+.+ --..+.+.+|+..+.+.+. -.-|...
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~--dEsl~a-rlv~nev~f~~~~~f~~~~---~kl~~~~ 167 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI--DESLAA-RLVSNEVQFYDLGSFKTIQ---HKLSVSG 167 (566)
T ss_pred ccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc--chhhhh-hhhcceEEEEecCCcccee---eeeeccc
Confidence 1 2357899999966554453333333 6889997 655443 2335679999987755443 2346788
Q ss_pred EEEEEEccCCC-cEEEE-----EecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC-
Q 012064 153 AHKLAIEPGSP-HVFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD- 225 (471)
Q Consensus 153 v~~~~~~~~~~-~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d- 225 (471)
|..+.++|... ..+++ .|.-+.+++|................ ....=..+.|++-+..+|+.++.|
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------Fkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------FKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-------cccceeEEEeccCCceEEEEEEEee
Confidence 99999999843 33332 35567899998774433322221111 111234678888755555544322
Q ss_pred ----------CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee---CCcEEEEecCCC
Q 012064 226 ----------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMG 292 (471)
Q Consensus 226 ----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~d~~~~ 292 (471)
.+++++++.... ........++|.++.|+|+++-++... --++.+||++..
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s----------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGES----------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred cCCCccccccceEEEEEecCce----------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 357777776322 111222368899999999998766554 237999998752
Q ss_pred CCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC---CCeEEE
Q 012064 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFI 369 (471)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~---dg~v~i 369 (471)
.+..+. .++ -+++-| +|.|++++.++- .|.|-|
T Consensus 305 ---------------------------------------~v~df~--egp--RN~~~f-np~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 305 ---------------------------------------PVFDFP--EGP--RNTAFF-NPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred ---------------------------------------EeEeCC--CCC--ccceEE-CCCCCEEEEeecCCCCCceEE
Confidence 122221 111 345555 999999987654 489999
Q ss_pred EEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec------CCcEEEecCCCCCC
Q 012064 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAADR 419 (471)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~~ 419 (471)
||+.+.+++..+.... -+-++|+|||++++|+.. |+.++||+......
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 9999988888887644 466899999999988864 78899999987544
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=2.2e-16 Score=129.30 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=176.9
Q ss_pred CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC-cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEec-
Q 012064 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL- 180 (471)
Q Consensus 103 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~- 180 (471)
...+|+|.+|++ |...++.+.....+.||...... ......+..|...|++++|+|..+ .|++|+.|..-++|..
T Consensus 9 ~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecC--CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccC
Confidence 457899999999 99999999999999999988777 566677899999999999999995 5899999999999998
Q ss_pred cCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCC
Q 012064 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (471)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (471)
..++-...+.... .....+++.|+|. ++.|++|+....|.+|-++... .....+++...+
T Consensus 86 ~~~~WkptlvLlR--------iNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~EN-----------dWWVsKhikkPi 145 (361)
T KOG1523|consen 86 SGGTWKPTLVLLR--------INRAATCVKWSPK-ENKFAVGSGARLISVCYYEQEN-----------DWWVSKHIKKPI 145 (361)
T ss_pred CCCeeccceeEEE--------eccceeeEeecCc-CceEEeccCccEEEEEEEeccc-----------ceehhhhhCCcc
Confidence 5555555544433 4446899999998 7999999999999999887543 111223445556
Q ss_pred ccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecC
Q 012064 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (471)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (471)
.+.|.++.|+|++-+|+.|+ |+..++|..--........ ...+.. ...-...+..+...
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa---p~pWgs-----------------k~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA---PTPWGS-----------------KMPFGQLMSEASSS 205 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCC---CCCCcc-----------------CCcHHHHHHhhccC
Confidence 78899999999999999988 7788887643211100000 000000 00001223333323
Q ss_pred CceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe-eeEEecCCCcceEEEEEcCC
Q 012064 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPH 396 (471)
Q Consensus 340 ~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~ 396 (471)
.+ .+..+.| +|.|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+
T Consensus 206 gg--wvh~v~f-s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 206 GG--WVHGVLF-SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred CC--ceeeeEe-CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 33 4999999 9999999999999999999976553 33333333355666666543
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-15 Score=127.01 Aligned_cols=306 Identities=11% Similarity=0.070 Sum_probs=191.7
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
+-.+..++|++.-..+|++..|-.|++||-.. .+...+.......|.|++|-|. .++.|+.++.. -|.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl-saselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL-SASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC-Ccceeeeeecc-eeEEEEcCcccc
Confidence 34577889999777788999999999999766 5445554556778999999995 44566666654 589997643211
Q ss_pred c------------eeeEeeceeeeEEEEEEccCCCcEEEEEe-cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 141 V------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 141 ~------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
. +....++| .+|+++.|.+||. .+++++ .|..|.+||..++..+..... ..+.+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~----------glgg~s 242 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPK----------GLGGFS 242 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccccc----------CCCcee
Confidence 1 11112344 6899999999995 556655 467899999999987665421 344688
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEE
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~ 287 (471)
-+.|+|| +.+|+.++-|+..++|......... +... ..+.|...+|+|+|++|.....+.-++|
T Consensus 243 lLkwSPd-gd~lfaAt~davfrlw~e~q~wt~e-------------rw~l--gsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 243 LLKWSPD-GDVLFAATCDAVFRLWQENQSWTKE-------------RWIL--GSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eEEEcCC-CCEEEEecccceeeeehhcccceec-------------ceec--cCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 9999999 6788889999999999665432111 1111 2448999999999999988887877777
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCC-ceeEeeeeeeeCCCCcEEEEeeCCC-
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-NCVTVKGVNFFGPKCEYVVSGSDCG- 365 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~g~~l~~g~~dg- 365 (471)
.+........+..... .+.+ ....+ ........+.. -.....+++| +|.|.+||+.-..+
T Consensus 307 sl~f~~~~~~~~~~~~------------~k~~-lliaD----L~e~ti~ag~~l~cgeaq~law-DpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQS------------IKRV-LLIAD----LQEVTICAGQRLCCGEAQCLAW-DPSGEYLAVIFKGQS 368 (445)
T ss_pred EEeecCCCccccCccc------------ceee-eeecc----chhhhhhcCcccccCccceeeE-CCCCCEEEEEEcCCc
Confidence 7654322221110000 0000 00000 00111111100 0112778998 99999999865433
Q ss_pred -------eEEEEEccCCeeeEEec-C--CCcceEEEEEcC---CCCEEEEeecCCcEEEecCC
Q 012064 366 -------RIFIWKKKGGELIRVIE-A--DRHVVNCIEPHP---HSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 366 -------~v~iwd~~~~~~~~~~~-~--h~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~ 415 (471)
.|.+||....-.+.... + .......++|+| ++.+|..+=..|.+.-|.+.
T Consensus 369 ~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 46677765432222211 1 112255667766 45566666556777777664
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.2e-16 Score=139.03 Aligned_cols=329 Identities=16% Similarity=0.209 Sum_probs=218.6
Q ss_pred CeEEEEEcccCccccccccc----eecccccceeeeeeeEEeccccccEEEEEEcCCCCEE-EEecCCCeEEEEECCCCc
Q 012064 20 ALVDVWLRELGQLSTRNFAL----RRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTER 94 (471)
Q Consensus 20 g~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~ 94 (471)
.-|+||++..|+-++..... ...-..+...++.+++.|. |...-+.+..+|||+|+ |+|.+-..|++||+.+-.
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS 85 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence 35889999877776543331 1222223334456666664 77888999999999875 577778899999998655
Q ss_pred eEEEeecCCCcceeEE-EEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC
Q 012064 95 VKLSFHSGHNDNVFQA-KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173 (471)
Q Consensus 95 ~~~~~~~~~~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 173 (471)
. .+.......+..+ -.+- |-..++.-..|.+|.+-.-........ + ...-.+++++.-... ++.++...
T Consensus 86 L--KFERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~G~hy~~R--I---P~~GRDm~y~~~scD-ly~~gsg~ 155 (703)
T KOG2321|consen 86 L--KFERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKYGRHYRTR--I---PKFGRDMKYHKPSCD-LYLVGSGS 155 (703)
T ss_pred e--eeeecccccceeEEEecc--chhhheEeecCceeeehhhcCeeeeee--c---CcCCccccccCCCcc-EEEeecCc
Confidence 4 3322233333332 2332 445555556676666543211111100 1 122345566543323 45566666
Q ss_pred eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCC
Q 012064 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (471)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (471)
.|+-++++.|..+..+.. ....++++..++- ..+|++|+.+|.|..||.+.......+.....+.
T Consensus 156 evYRlNLEqGrfL~P~~~----------~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~---- 220 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFET----------DSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN---- 220 (703)
T ss_pred ceEEEEcccccccccccc----------ccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccC----
Confidence 799999999998887764 3457899999998 4699999999999999999987766554432211
Q ss_pred CcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccC
Q 012064 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (471)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (471)
..........|+++.|+.+|-.+++|. .|.++|||++...
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--------------------------------------- 261 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--------------------------------------- 261 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC---------------------------------------
Confidence 111122234599999999998888887 7899999998742
Q ss_pred CeeeecCCceeEeeeeeeeCCC--CcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEE
Q 012064 333 PQVYKGHRNCVTVKGVNFFGPK--CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (471)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~--g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 410 (471)
......|....+|..+.| -+. ++.+++.. ...++|||-.+|+....+... ..++.+++-|++.++.++-+++.+.
T Consensus 262 pl~~kdh~~e~pi~~l~~-~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 262 PLLVKDHGYELPIKKLDW-QDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred ceeecccCCccceeeecc-cccCCCceEEecc-hHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcce
Confidence 233344555556888888 443 34555553 568999999999998887643 4599999999999999998888777
Q ss_pred EecCCC
Q 012064 411 ILTPNA 416 (471)
Q Consensus 411 iw~~~~ 416 (471)
.|=+..
T Consensus 339 ~yyiP~ 344 (703)
T KOG2321|consen 339 TYYIPS 344 (703)
T ss_pred eEEccc
Confidence 665543
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.2e-15 Score=141.53 Aligned_cols=235 Identities=12% Similarity=0.077 Sum_probs=153.3
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC---CCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
..|.+||.+..+. ..+ ..+...+...+|+| ||+.|+..+. +..+.+|++.+++... +...........|+
T Consensus 179 ~~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~---l~~~~~~~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCC-EEe-ecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEE---ccCCCCCcCCeEEC
Confidence 4799999875554 334 34667899999999 9999886542 3579999987765433 22233344568999
Q ss_pred cCCCcEEEEEecCC--eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCCe--EEEEEcC
Q 012064 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEY--TRLYDIR 234 (471)
Q Consensus 160 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--i~i~d~~ 234 (471)
|||+.++++.+.+| .|++||+++++..+... ....+....|+|+ ++.|+..+ .++. |+.+|+.
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-----------~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-----------CCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECC
Confidence 99976666655555 58999998876543322 1224578899999 45555444 4444 4444665
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C-C--cEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
+++.. . ............|+|||++|+..+ + + .+++||+.++..
T Consensus 320 ~g~~~---------------~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---------------- 367 (429)
T PRK03629 320 GGAPQ---------------R-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------- 367 (429)
T ss_pred CCCeE---------------E-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----------------
Confidence 44311 1 111122345688999999988765 2 2 488899876421
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCe---EEEEEccCCeeeEEecCCCcc
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR---IFIWKKKGGELIRVIEADRHV 387 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~---v~iwd~~~~~~~~~~~~h~~~ 387 (471)
..+..... .....| +|||++|+.++.++. ++++++ +|+....+.+|.+.
T Consensus 368 -----------------------~~Lt~~~~---~~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~ 419 (429)
T PRK03629 368 -----------------------QVLTDTFL---DETPSI-APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ 419 (429)
T ss_pred -----------------------EEeCCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence 11111110 224556 999999998887753 677777 56677788888888
Q ss_pred eEEEEEcCC
Q 012064 388 VNCIEPHPH 396 (471)
Q Consensus 388 v~~~~~s~~ 396 (471)
+...+|+|-
T Consensus 420 ~~~p~Wsp~ 428 (429)
T PRK03629 420 VKFPAWSPY 428 (429)
T ss_pred cCCcccCCC
Confidence 999999983
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.9e-16 Score=145.47 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=151.7
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
..|.+||....+. ..+ ..+...+.+.+|+| |++.|+..+.+ ..|.+||+.+++... +..+.+...+.+|+
T Consensus 184 ~~l~i~D~~g~~~-~~l-t~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNP-QTI-LRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCc-eEe-ecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceEC
Confidence 4699999864443 444 45677899999999 99999987643 469999997765433 33334445678999
Q ss_pred cCCCcEEEEEecCC--eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCCe--EEEEEcC
Q 012064 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEY--TRLYDIR 234 (471)
Q Consensus 160 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--i~i~d~~ 234 (471)
|++++++++.+.+| .|++||+.+++...... +.......+|+|| +..++..+ .+|. |+++|+.
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-----------~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-----------HFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-----------CCCCccceEECCC-CCEEEEEECCCCCceEEEEECC
Confidence 99977666766665 59999998876433221 1122356799999 45555444 4554 6666665
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C-C--cEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
+++.. .+. .+.......+|+|+|++|+..+ + + .|++||+.++...
T Consensus 325 ~g~~~---------------~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--------------- 373 (433)
T PRK04922 325 GGSAE---------------RLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--------------- 373 (433)
T ss_pred CCCeE---------------Eee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------------
Confidence 54311 011 1112334689999999988764 2 2 5899998764211
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC---CeEEEEEccCCeeeEEecCCCcc
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHV 387 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~h~~~ 387 (471)
.+.... . .....| +|||++++..+.+ +.|+++++. +.....+..+.+.
T Consensus 374 ------------------------~Lt~~~-~--~~~p~~-spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~ 424 (433)
T PRK04922 374 ------------------------TLTPGS-L--DESPSF-APNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGE 424 (433)
T ss_pred ------------------------ECCCCC-C--CCCceE-CCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCC
Confidence 111111 1 223466 9999988876653 468888884 5556667666677
Q ss_pred eEEEEEcC
Q 012064 388 VNCIEPHP 395 (471)
Q Consensus 388 v~~~~~s~ 395 (471)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 88888887
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=2.8e-16 Score=137.29 Aligned_cols=254 Identities=15% Similarity=0.164 Sum_probs=170.3
Q ss_pred CCeEEEEEeCCCeEEEEeccccCc----ceeeEeeceeeeEEEEEE-----ccCCCcEEEEEecCCeEEEEeccCCccce
Q 012064 117 DDRSIVTCAADGQVRHAQILERGG----VETKLLGKHQGRAHKLAI-----EPGSPHVFYTCGEDGLVQHFDLRTGAATE 187 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~-----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 187 (471)
.|++|+..-. ..+.+|+.+.... +....+.+. ...+-+| .|.+ .-++.|-.-|.+.+.|....+..+
T Consensus 134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred CCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCC-cceEEeeccCceEEecchhhHHHH
Confidence 5666655432 3578888763222 222222221 1223333 2344 346777788899999987744333
Q ss_pred eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCC-------------CCCcCCCC
Q 012064 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ-------------PADYFCPP 254 (471)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~~~~ 254 (471)
.+.. ..+.....++++.|-|-+...++++..+|.+++||.....-.....+.. ......|.
T Consensus 210 lfne------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 210 LFNE------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhhh------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 3321 1222456899999999878899999999999999875332211111100 00011222
Q ss_pred cccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCC
Q 012064 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (471)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (471)
....-..+.|..++|+|||++||+.+ |+.++|||..+. +..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------------------------------------eLl 325 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------------------------------------ELL 325 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH--------------------------------------HHH
Confidence 22223356899999999999999998 678999998763 223
Q ss_pred eeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCC-----------------
Q 012064 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH----------------- 396 (471)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~----------------- 396 (471)
..++..-+. ..|++| ||||+||++|++|--|.||.+...+.+..-++|...|..++|.|.
T Consensus 326 g~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~ 402 (636)
T KOG2394|consen 326 GVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTF 402 (636)
T ss_pred HHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccc
Confidence 333333333 889999 999999999999999999999999999999999999999999831
Q ss_pred ------------------C-------------CEEEEeecCCcEEEecCCCCCCcc
Q 012064 397 ------------------S-------------TVLASSGIESDIKILTPNAADRAT 421 (471)
Q Consensus 397 ------------------~-------------~~l~s~~~dg~i~iw~~~~~~~~~ 421 (471)
+ -.+.+.+.|..+.+||+....+..
T Consensus 403 ~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 403 SDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 1 147788899999999998765543
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-15 Score=125.68 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=155.3
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec-cccccEEEEEEcCCC-CEEEEecC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDG-DILISGSD 81 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~~g-~~l~s~~~ 81 (471)
+++++.-..+|++..|-+|++|+-+. ... ..++ .-+..|+|++|-|.+ +.|+.|+.
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~p---------------------t~Lks~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCP---------------------TKLKSVSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCC---------------------ceecchhhcceeEEEeccCCcceeeeeec
Confidence 45566555678888999999999885 333 2333 235789999999964 67888887
Q ss_pred CCeEEEEECCCCceEEE------------e-ecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcceeeEee
Q 012064 82 DRRVILWDWKTERVKLS------------F-HSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG 147 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~------------~-~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~ 147 (471)
.| |.+|.....-.... + ..+| ..|++++|.+ ||..+++++. |..|.|||..++..+... .
T Consensus 162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~ 235 (445)
T KOG2139|consen 162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLI--P 235 (445)
T ss_pred ce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccc--c
Confidence 65 99998653211000 1 1345 6899999999 9999998876 578999999998877642 3
Q ss_pred ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCe
Q 012064 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (471)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (471)
...+.+.-+.|+||+ ..+++++-|+..++|+....-......+ ..+.|...+|+|.|..+|++.+...
T Consensus 236 ~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~l----------gsgrvqtacWspcGsfLLf~~sgsp- 303 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWIL----------GSGRVQTACWSPCGSFLLFACSGSP- 303 (445)
T ss_pred cCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceec----------cCCceeeeeecCCCCEEEEEEcCCc-
Confidence 445678889999999 5788899999999996544322222222 3347999999999766666666554
Q ss_pred EEEEEcCCCccCCCCCCCCCCCc------CCCCccc---CCCccceEEEEEcCCCCeEEEeeCC
Q 012064 228 TRLYDIRKYKWDGSTDFGQPADY------FCPPNLI---GDEQVGITGLAFSDQSELLVSYNDE 282 (471)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (471)
++|.+...+......-.+.... ....... ..-.+++.+++|.|.|.+|++.-.+
T Consensus 304 -~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 304 -RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred -eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 4444432221111110000000 0000001 1114678899999999999987644
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.3e-14 Score=119.04 Aligned_cols=237 Identities=14% Similarity=0.185 Sum_probs=158.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCc--ceeEEEEecCCCCeEEEEEeC-C------CeEEEEe
Q 012064 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND--NVFQAKIMPFTDDRSIVTCAA-D------GQVRHAQ 134 (471)
Q Consensus 64 V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~-d------g~i~iwd 134 (471)
..+++|+.|...++.|..+| .+||+.+--+...+. ..+.+ .+..+-| ..++|+..+. + ..+.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhh----hhceEEEecCCCCCCCCCceEEEEe
Confidence 44599999999999998887 899998653321111 11222 2222333 3455554332 2 4799999
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEecc-CCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
=....++.. + ....+|.++.+.++. +++. .++.|.+|... +.+....+.... .+..+.+++-..
T Consensus 82 D~k~~~i~e--l-~f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~--------NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 82 DLKERCIIE--L-SFNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRS--------NPKGLCSLCPTS 146 (346)
T ss_pred cccCcEEEE--E-EeccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeeccc--------CCCceEeecCCC
Confidence 433344333 2 366889999999864 3333 46789999987 344444443211 122333443333
Q ss_pred CCCceEEE-EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCc-EEEEecC
Q 012064 214 RNANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLFTQD 290 (471)
Q Consensus 214 ~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~-i~i~d~~ 290 (471)
. ..+||. |..-|.|++-|+...+. .+......|.+.|.+++.+.+|.++|+++ .|+ |+|||..
T Consensus 147 ~-k~~LafPg~k~GqvQi~dL~~~~~-------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 147 N-KSLLAFPGFKTGQVQIVDLASTKP-------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred C-ceEEEcCCCccceEEEEEhhhcCc-------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 2 344443 45679999999987652 13467788999999999999999999999 554 9999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
++.. +..+........+.+++| ||++.+||++|+.|+++||
T Consensus 213 ~g~~--------------------------------------l~E~RRG~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 213 DGTL--------------------------------------LQELRRGVDRADIYCIAF-SPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred CCcE--------------------------------------eeeeecCCchheEEEEEe-CCCccEEEEEcCCCeEEEE
Confidence 8643 344443333445999999 9999999999999999999
Q ss_pred EccC
Q 012064 371 KKKG 374 (471)
Q Consensus 371 d~~~ 374 (471)
.+..
T Consensus 254 ~l~~ 257 (346)
T KOG2111|consen 254 SLRD 257 (346)
T ss_pred Eeec
Confidence 8865
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=7.9e-16 Score=129.43 Aligned_cols=277 Identities=16% Similarity=0.144 Sum_probs=194.7
Q ss_pred ccccEEEEEEcCCC--CEEEEecCCCeEEEEECCCCceEEEe-----ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE
Q 012064 60 HRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERVKLSF-----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (471)
Q Consensus 60 h~~~V~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 132 (471)
....|..++|.-++ ..|...+.+..+..+.+......... .....++|..++.. +..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEE
Confidence 45678888887665 45555556777777777766554332 23456677777764 457888888999999
Q ss_pred EeccccC--cceeeEeeceeeeEEEEEEccCCCcEEEEEecC--CeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 133 AQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 133 wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
|..+.+. ......+. ....+..+.-++..++++++|+.. ..+.+||+++.+.+..-+..+... -+..-+..+++
T Consensus 130 ~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~-L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR-LGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc-ccceeeeeecc
Confidence 9987443 11111133 235567777888888888889999 899999999986555444333222 22234556788
Q ss_pred EEEcCC-CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEE
Q 012064 209 IAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (471)
Q Consensus 209 ~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i 286 (471)
+.|-|. ..+.|++++.-+.+++||.+.++ .|...+.-...+++++...|++++++++. .+.+..
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~ 273 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR--------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAK 273 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccC--------------cceeEeccccCcceeeeecCCCcEEEEecccchhhe
Confidence 888774 14689999999999999999654 22333333467899999999999999888 678999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCe
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~ 366 (471)
||.+.++. ....+.+-.+. +.++.. +|.++++++++-|..
T Consensus 274 FD~r~~kl-------------------------------------~g~~~kg~tGs--irsih~-hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 274 FDLRGGKL-------------------------------------LGCGLKGITGS--IRSIHC-HPTHPVLASCGLDRY 313 (412)
T ss_pred ecccCcee-------------------------------------eccccCCccCC--cceEEE-cCCCceEEeecccee
Confidence 99988632 22335555555 888887 999999999999999
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCC
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (471)
|||+|+++.+++..... ....+++-+.++-
T Consensus 314 vRIhD~ktrkll~kvYv-Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 314 VRIHDIKTRKLLHKVYV-KSRLTFILLRDDV 343 (412)
T ss_pred EEEeecccchhhhhhhh-hccccEEEecCCc
Confidence 99999998776654432 3356666665543
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.4e-15 Score=138.47 Aligned_cols=233 Identities=14% Similarity=0.122 Sum_probs=148.6
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe--cCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
.|.+||........ +..+...+...+|+|||+.++++.. .+..|.+||+.+++....... ....
T Consensus 180 ~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----------~~~~ 245 (429)
T PRK03629 180 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----------PRHN 245 (429)
T ss_pred eEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----------CCCc
Confidence 68888876554332 4456678999999999965544432 235799999988764332221 1123
Q ss_pred EEEEEcCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--C
Q 012064 207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~ 282 (471)
...+|+||+..++++...+| .|++||+.+++.. . ...+...+....|+|||+.|+..++ +
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------------~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------Q-VTDGRSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------------E-ccCCCCCcCceEECCCCCEEEEEeCCCC
Confidence 46899999543444445455 5889999876421 1 1112335678899999998877663 2
Q ss_pred --cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 283 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
.|+++++.++. ...+...... .....| +|||++|+.
T Consensus 310 ~~~Iy~~d~~~g~---------------------------------------~~~lt~~~~~--~~~~~~-SpDG~~Ia~ 347 (429)
T PRK03629 310 RPQVYKVNINGGA---------------------------------------PQRITWEGSQ--NQDADV-SSDGKFMVM 347 (429)
T ss_pred CceEEEEECCCCC---------------------------------------eEEeecCCCC--ccCEEE-CCCCCEEEE
Confidence 35555665431 1112111111 345666 999999987
Q ss_pred eeCC---CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCc---EEEecCCCCCCcccCcchheeehhhH
Q 012064 361 GSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD---IKILTPNAADRATLPTNIEQAMMMTM 434 (471)
Q Consensus 361 g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
.+.+ ..|++||+.+++.. .+... .......|+|||++|+.++.++. +.+++++......+..+...+....|
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW 425 (429)
T ss_pred EEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCccc
Confidence 6543 46889999887643 34322 23457889999999998887764 78888877777777766666665555
Q ss_pred H
Q 012064 435 T 435 (471)
Q Consensus 435 ~ 435 (471)
.
T Consensus 426 s 426 (429)
T PRK03629 426 S 426 (429)
T ss_pred C
Confidence 4
No 224
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.5e-16 Score=135.46 Aligned_cols=253 Identities=16% Similarity=0.187 Sum_probs=158.1
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC-CCcEEEEEecCCeEEEEe
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYTCGEDGLVQHFD 179 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd 179 (471)
.+|++.|+++.|+. +|.+|++|++|-.+.|||.-..+... ..-.+|...|.++.|-|. ++.++++|..|..|+++|
T Consensus 47 ~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllh-sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLH-SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceecceeecC--CCCEEeecCCcceEEeecchhcceee-eeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 79999999999999 99999999999999999998655544 345789999999999985 336788999999999999
Q ss_pred ccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc--
Q 012064 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-- 257 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-- 257 (471)
+...+.-..-.........-..|...|..++-.|.+++.+.++++||+++-||++....-.. ...++....
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p-------~~~~~~~l~ny 196 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP-------DEDCPSILVNY 196 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc-------cccccHHHHHh
Confidence 98522111000000000001126667889999999889999999999999999997542111 000111111
Q ss_pred CCCccceEEEEEcCCC-CeEEEeeCC-cEEEEecCCCCCCCCCCC----CCccccccccccCCCCCCccCCCCCCccccc
Q 012064 258 GDEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDMGLGPNPPPS----SPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (471)
Q Consensus 258 ~~~~~~i~~~~~~~~~-~~l~~~~~~-~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (471)
....-...++..+|.. .+|+.|+.+ -.++||.+.......-.. .++........+.|++-
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-------------- 262 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-------------- 262 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc--------------
Confidence 1112346788999965 567777755 799999644322111100 01000001111122111
Q ss_pred CCeeeecCCc--eeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEE
Q 012064 332 APQVYKGHRN--CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (471)
Q Consensus 332 ~~~~~~~~~~--~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~ 380 (471)
....+... ...++-+.| +|+|.-|...-..-.|+++|+..++....
T Consensus 263 --kn~~gn~~~~~~~~t~vtf-npNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 263 --KNSQGNLDRYITCCTYVTF-NPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred --cCcccccccceeeeEEEEE-CCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 00111000 011455666 99998666554455899999987765543
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.4e-14 Score=118.77 Aligned_cols=241 Identities=14% Similarity=0.150 Sum_probs=163.5
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC------CeEEEEe
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFD 179 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd 179 (471)
...+++|+. |...++.+.++| .+||+.+--+...........-.+..+-|-. +.+.++||.+ ..+.|||
T Consensus 7 ~~lsvs~NQ--D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQ--DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEcc--CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEe
Confidence 345589998 888888888765 7999886543322211111111222222322 2445555544 5799999
Q ss_pred ccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC-ccCCCCCCCCCCCcCCCCcccC
Q 012064 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFGQPADYFCPPNLIG 258 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 258 (471)
=....++..+. ...+|.++.+.++ .+++.. .+.|++|..... ++... .....
T Consensus 82 D~k~~~i~el~-----------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~------------~et~~ 134 (346)
T KOG2111|consen 82 DLKERCIIELS-----------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHV------------IETRS 134 (346)
T ss_pred cccCcEEEEEE-----------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheee------------eeccc
Confidence 55556666655 4568999999986 454444 568999998743 32211 11111
Q ss_pred CCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee
Q 012064 259 DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (471)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
. .....+++-..+..+||.-+ -|.+.+-|+...+. ......
T Consensus 135 N-PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------------------------------~~p~~I 177 (346)
T KOG2111|consen 135 N-PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------------------------------------NAPSII 177 (346)
T ss_pred C-CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc------------------------------------CCceEE
Confidence 1 22244444444445666555 56899999876421 134677
Q ss_pred ecCCceeEeeeeeeeCCCCcEEEEeeCCCe-EEEEEccCCeeeEEecCC--CcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~-v~iwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
..|... |.|++. +-+|..+|++|..|+ |||||..+|+++.+++-. ...|.+++|||++.+||.+|+-|++.|+.
T Consensus 178 ~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 178 NAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 889887 889998 999999999999997 799999999999998643 34799999999999999999999999999
Q ss_pred CCCCC
Q 012064 414 PNAAD 418 (471)
Q Consensus 414 ~~~~~ 418 (471)
+....
T Consensus 255 l~~~~ 259 (346)
T KOG2111|consen 255 LRDTE 259 (346)
T ss_pred eecCC
Confidence 98744
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=1.3e-14 Score=130.38 Aligned_cols=292 Identities=13% Similarity=0.087 Sum_probs=171.9
Q ss_pred EEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
+++-..++.|.+.|..+.+.+.++..+. ..-..+.|+| |++++++++.||.|.++|+.+.+.+.. +.. .....+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~--i~~-G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVAT--IKV-GGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEE--EE--SSEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEE--Eec-CCCcce
Confidence 3456678999999999999988884433 3334577999 999999999999999999999887665 332 234578
Q ss_pred EEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
++++++|++++++...++.+.++|.++.+.++.+......... ...++.++..+|.+..+++..-+.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999766667778999999999999988877643221110 2335778888887544555555668888888766
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (471)
.+.. ...............|+|++++++.+. ++.+-++|..+++....+..
T Consensus 160 ~~~~--------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~------------- 212 (369)
T PF02239_consen 160 PKNL--------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT------------- 212 (369)
T ss_dssp SSCE--------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------------
T ss_pred cccc--------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec-------------
Confidence 4311 001111123456789999999877655 56899999876532111000
Q ss_pred CCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEE
Q 012064 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (471)
.. ........--.|.....++... ..+...++.-....+.+||..+.+.++++....++ ..+..
T Consensus 213 -----------g~-~p~~~~~~~~php~~g~vw~~~---~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 213 -----------GK-KPHPGPGANFPHPGFGPVWATS---GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp -----------SS-SBEETTEEEEEETTTEEEEEEE---BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred -----------cc-cccccccccccCCCcceEEeec---cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 00 0000000000122211222221 12222222222335667899999999999887666 78888
Q ss_pred cCCCCEEEEe----ecCCcEEEecCCCCCC
Q 012064 394 HPHSTVLASS----GIESDIKILTPNAADR 419 (471)
Q Consensus 394 s~~~~~l~s~----~~dg~i~iw~~~~~~~ 419 (471)
+|+++++... ...+.|.++|.++.+.
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 9999998887 4568999999998754
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.7e-15 Score=126.28 Aligned_cols=258 Identities=17% Similarity=0.204 Sum_probs=181.7
Q ss_pred CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceee----EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEe
Q 012064 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK----LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (471)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 179 (471)
...|..++|.--...+.+..++.+..+..+.+......... .......+|..++... + .+++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g--~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-G--TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC-C--EEEEEecCCcEEEEe
Confidence 44677777775112344555556666777766655544331 2344556666666543 3 478899999999999
Q ss_pred ccCCccc--eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC--CeEEEEEcCCCccCCCCCCCCCCCcCCCCc
Q 012064 180 LRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--EYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (471)
Q Consensus 180 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (471)
.+.+... ...... ....+..+.-+|..+.++++|+.. ..+.+||+...+.+.+.+.- |.+ .
T Consensus 132 ~k~~d~hss~l~~la---------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv-pnD-----~ 196 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA---------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV-PND-----R 196 (412)
T ss_pred ccCCccccccceeee---------cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC-CCc-----c
Confidence 9855421 111110 223466777777767888889988 88999999987543321110 100 0
Q ss_pred ccCCCccceEEEEEcCC--CCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccC
Q 012064 256 LIGDEQVGITGLAFSDQ--SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (471)
Q Consensus 256 ~~~~~~~~i~~~~~~~~--~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (471)
+--.-.-.++.+.|-+. ...|++++ .+.+++||.+.+ +.+
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-------------------------------------RRP 239 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-------------------------------------RRP 239 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc-------------------------------------Ccc
Confidence 11112345678899887 67788877 779999999876 344
Q ss_pred CeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEE-ecCCCcceEEEEEcCCCCEEEEeecCCcEEE
Q 012064 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKI 411 (471)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 411 (471)
+..+.-.... +.++.. .|+|+++++|..-|.+..||+..++.... +++-.+.|.++..+|.+++|+++|-|..+||
T Consensus 240 V~~fd~~E~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 240 VAQFDFLENP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred eeEeccccCc--ceeeee-cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 5555544554 888887 89999999999999999999999988866 8899999999999999999999999999999
Q ss_pred ecCCCCCC
Q 012064 412 LTPNAADR 419 (471)
Q Consensus 412 w~~~~~~~ 419 (471)
+|+++.++
T Consensus 317 hD~ktrkl 324 (412)
T KOG3881|consen 317 HDIKTRKL 324 (412)
T ss_pred eecccchh
Confidence 99998544
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.3e-14 Score=135.43 Aligned_cols=234 Identities=13% Similarity=0.136 Sum_probs=152.0
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC---CCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
..|.++|...... ..+ ..|...+.+.+|+| ||+.|+..+. +..|.+||+.+++... +..+.+.+...+|+
T Consensus 182 ~~l~~~d~dg~~~-~~l-t~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANV-RYL-TDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCc-EEE-ecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEEC
Confidence 4788999864443 444 56778999999999 9999887764 4689999997765432 44556677889999
Q ss_pred cCCCcEEEEEecCCe--EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCC--eEEEEEcC
Q 012064 160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE--YTRLYDIR 234 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~~ 234 (471)
|+|+.++++.+.++. |++||+++++...... +........|+|| +..++..+ .+| .|+++|+.
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-----------~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-----------SPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceEEccC-----------CCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECC
Confidence 999776667776665 7777988876533221 2223456899999 55555544 333 57888876
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--C--cEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
.++.. . ...+...+....|+|+|+.|+.... + .+.+||+..+..
T Consensus 323 g~~~~---------------~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---------------- 370 (435)
T PRK05137 323 GSNPR---------------R-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---------------- 370 (435)
T ss_pred CCCeE---------------E-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----------------
Confidence 54321 1 1111334566889999999887652 2 578888754311
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC------CeEEEEEccCCeeeEEecCC
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC------GRIFIWKKKGGELIRVIEAD 384 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d------g~v~iwd~~~~~~~~~~~~h 384 (471)
..+... . .+....| +|||++|+..+.+ ..++++|+..++. ..+. .
T Consensus 371 -----------------------~~lt~~-~--~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~ 421 (435)
T PRK05137 371 -----------------------RILTSG-F--LVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-T 421 (435)
T ss_pred -----------------------EeccCC-C--CCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-C
Confidence 111111 1 1445677 9999998765432 3688888865544 4454 3
Q ss_pred CcceEEEEEcCC
Q 012064 385 RHVVNCIEPHPH 396 (471)
Q Consensus 385 ~~~v~~~~~s~~ 396 (471)
.+.+...+|+|-
T Consensus 422 ~~~~~~p~Wsp~ 433 (435)
T PRK05137 422 PGDASDPAWSPL 433 (435)
T ss_pred CCCccCcccCCC
Confidence 445777888773
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=2.1e-16 Score=135.68 Aligned_cols=227 Identities=15% Similarity=0.212 Sum_probs=183.0
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+.|+.+|++++.|+..|-+..+|..++++. ..+. -...|..+.|-.+.+++|++-. .
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~ 191 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------FEIN-VMETVRDVTFLHNEQFFAVAQK-K 191 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceee---------------------eeee-hhhhhhhhhhhcchHHHHhhhh-c
Confidence 357889999999999999999999988876 2332 2467889999888889998866 5
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
.+.||| ..|..+..+ +.| ..|..+.|.| .--+|++++..|.++--|+..++.+.. +....+.+..++-+|-+
T Consensus 192 y~yvYD-~~GtElHCl-k~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~G~~~vm~qNP~N- 263 (545)
T KOG1272|consen 192 YVYVYD-NNGTELHCL-KRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVAS--IRTGAGRTDVMKQNPYN- 263 (545)
T ss_pred eEEEec-CCCcEEeeh-hhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHH--HHccCCccchhhcCCcc-
Confidence 799999 457777776 444 5789999999 777888999999999999999998876 55566788889999988
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (471)
-++-+|...|+|.+|.....+++..+.+ |.++|.+++++++ |+++++++.|..++|||+++......
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLc----------H~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t-- 330 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILC----------HRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHT-- 330 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHh----------cCCCcceEEECCC-CcEEeecccccceeEeeeccccccce--
Confidence 5788999999999999999888776665 7778999999998 79999999999999999998753211
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEec
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~ 289 (471)
... ..+...+++|..| +||.+..+.+.+|.-
T Consensus 331 ------------~~t--p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 331 ------------YRT--PHPASNLSLSQKG-LLALSYGDHVQIWKD 361 (545)
T ss_pred ------------eec--CCCcccccccccc-ceeeecCCeeeeehh
Confidence 111 2345677887766 566666778999953
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.1e-14 Score=134.14 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=142.4
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe--cCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
..|.++|....... .+..+...+...+|+|||+.++++.. .+..|++||+++++...... ....
T Consensus 182 ~~l~~~d~dg~~~~---~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-----------~~g~ 247 (435)
T PRK05137 182 KRLAIMDQDGANVR---YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-----------FPGM 247 (435)
T ss_pred eEEEEECCCCCCcE---EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-----------CCCc
Confidence 37888887544332 25667788999999999965544432 24689999998886543221 2224
Q ss_pred eEEEEEcCCCCceEEEEeCCCe--EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--
Q 012064 206 LNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 281 (471)
+...+|+||+..++++.+.++. |++||+.+++.. ....+........|+|||+.|+..++
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----------------RLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----------------EccCCCCccCceeEcCCCCEEEEEECCC
Confidence 5678999995445556666655 777788765421 11222334567899999998887663
Q ss_pred C--cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 282 E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 282 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
+ .|+++|+..+. ...+..+... +....| +|||++|+
T Consensus 312 g~~~Iy~~d~~g~~---------------------------------------~~~lt~~~~~--~~~~~~-SpdG~~ia 349 (435)
T PRK05137 312 GSPQLYVMNADGSN---------------------------------------PRRISFGGGR--YSTPVW-SPRGDLIA 349 (435)
T ss_pred CCCeEEEEECCCCC---------------------------------------eEEeecCCCc--ccCeEE-CCCCCEEE
Confidence 2 58888876531 1122211111 445667 99999998
Q ss_pred EeeCC---CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecC------CcEEEecCCCCCCcccC
Q 012064 360 SGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE------SDIKILTPNAADRATLP 423 (471)
Q Consensus 360 ~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~ 423 (471)
..+.+ ..|.+||+..+. ...+. ....+..+.|+|||+.|+..+.+ ..++++++.++....+.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 76543 368889985544 33343 23357789999999987765442 25888888876665554
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1e-14 Score=135.50 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=147.6
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
..|.++|.. +.....+ ..+...+.+.+|+| ||+.|+..+.+ ..|.+||+.+++... +....+.....+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEEC
Confidence 467888874 4443444 46777899999999 99999877643 359999998776533 33334556789999
Q ss_pred cCCCcEEEEEecCCeEEEEe--ccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE-EEeCCCeEEEEEcC--
Q 012064 160 PGSPHVFYTCGEDGLVQHFD--LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEYTRLYDIR-- 234 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~i~d~~-- 234 (471)
||++.++++.+.+|...+|. +.++.. ..+.. +........|+||+ ..++ ++..+|...+|.+.
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~----------~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ----------SSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCc-EECCC----------CCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEECC
Confidence 99976666777888766665 444432 22211 11234567899994 5555 44445666666553
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC---cEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
.++. ..+. ..........|+|||++|+..+ ++ .|++||+.++..
T Consensus 317 ~g~~---------------~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------------- 364 (427)
T PRK02889 317 GGAA---------------QRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---------------- 364 (427)
T ss_pred CCce---------------EEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------------
Confidence 3221 0011 0112234578999999988765 22 599999876421
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC---eEEEEEccCCeeeEEecCCCcc
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRHV 387 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg---~v~iwd~~~~~~~~~~~~h~~~ 387 (471)
..+..... .....| +|||++|+..+.++ .+++.++ +++....+..+.+.
T Consensus 365 -----------------------~~lt~~~~---~~~p~~-spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~ 416 (427)
T PRK02889 365 -----------------------TALTDTTR---DESPSF-APNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD 416 (427)
T ss_pred -----------------------EEccCCCC---ccCceE-CCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence 11111111 234567 99999998776543 4666666 56666677767778
Q ss_pred eEEEEEcCC
Q 012064 388 VNCIEPHPH 396 (471)
Q Consensus 388 v~~~~~s~~ 396 (471)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 888899874
No 232
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.68 E-value=7.1e-15 Score=121.69 Aligned_cols=251 Identities=15% Similarity=0.174 Sum_probs=182.0
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE-CCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD-WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
.+.+.++||.+.|+....-|-..-+.+.+.|.+++||- .+.++.-..+...-..+++++.+.+ +...|+.+-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceE
Confidence 45678899999999999989888899999999999994 4556655555444567889999999 99999999999999
Q ss_pred EEEecccc--CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 131 RHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 131 ~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.-+.+... +....+....|...+..+-|+... ..+++.+.|..+.---.+.+..+..+... ....+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----------~~~t~ 160 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFE-----------TPASA 160 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEee-----------ccCCC
Confidence 88876432 222334467799999999998766 57899999987765555666554433321 11122
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF 287 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~ 287 (471)
+.+.- .+...|...|.+....+..... .+.....+|...+.+++|.|..+.|.++..+ .+.+|
T Consensus 161 ~~~d~---~~~fvGd~~gqvt~lr~~~~~~-------------~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 161 LQFDA---LYAFVGDHSGQITMLKLEQNGC-------------QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred Cceee---EEEEecccccceEEEEEeecCC-------------ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 22221 1445566667776666543321 2344566788999999999999999999855 79999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeE
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v 367 (471)
|+..+ ......+.+|... +..+.+ -+--+.++++++||.|
T Consensus 225 digg~-------------------------------------~g~~~el~gh~~k--V~~l~~-~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 225 DIGGR-------------------------------------KGTAYELQGHNDK--VQALSY-AQHTRQLISCGEDGGI 264 (404)
T ss_pred eccCC-------------------------------------cceeeeeccchhh--hhhhhh-hhhheeeeeccCCCeE
Confidence 99764 2334566677766 777776 6777889999999999
Q ss_pred EEEEc
Q 012064 368 FIWKK 372 (471)
Q Consensus 368 ~iwd~ 372 (471)
.+||.
T Consensus 265 ~~w~m 269 (404)
T KOG1409|consen 265 VVWNM 269 (404)
T ss_pred EEEec
Confidence 99997
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=9.6e-15 Score=136.17 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=145.5
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEec--CCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
..|.+||....... .+..+...+.+.+|+|+++.++++... +..|++||+.+++...... ....
T Consensus 184 ~~l~i~D~~g~~~~---~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-----------~~g~ 249 (433)
T PRK04922 184 YALQVADSDGYNPQ---TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-----------FRGI 249 (433)
T ss_pred EEEEEECCCCCCce---EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-----------CCCC
Confidence 36888987543332 255567789999999999654444322 3469999998876533221 1112
Q ss_pred eEEEEEcCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--
Q 012064 206 LNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 281 (471)
..+..|+|++..++++.+.+| .|++||+.+++.. ....+.......+|+|||+.|+..++
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----------------~lt~~~~~~~~~~~spDG~~l~f~sd~~ 313 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----------------RLTNHFGIDTEPTWAPDGKSIYFTSDRG 313 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----------------ECccCCCCccceEECCCCCEEEEEECCC
Confidence 357899999544555555555 5999999876521 11122233456899999998887763
Q ss_pred C--cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 282 E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 282 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
+ .++++++.++. ...+..+... ....+| +|||++|+
T Consensus 314 g~~~iy~~dl~~g~---------------------------------------~~~lt~~g~~--~~~~~~-SpDG~~Ia 351 (433)
T PRK04922 314 GRPQIYRVAASGGS---------------------------------------AERLTFQGNY--NARASV-SPDGKKIA 351 (433)
T ss_pred CCceEEEEECCCCC---------------------------------------eEEeecCCCC--ccCEEE-CCCCCEEE
Confidence 3 37777765531 1111111111 335677 99999998
Q ss_pred EeeCCC---eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecC---CcEEEecCCCCCCcccCcchheeehhh
Q 012064 360 SGSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQAMMMT 433 (471)
Q Consensus 360 ~g~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~ 433 (471)
..+.++ .|++||+.+++.. .+. +........|+|||++++..+.+ +.|.++++..+....+..+...+..+.
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~ 429 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPA 429 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCc
Confidence 765432 6999999877654 443 33345678999999987766653 468888887766555554444444433
Q ss_pred H
Q 012064 434 M 434 (471)
Q Consensus 434 ~ 434 (471)
+
T Consensus 430 w 430 (433)
T PRK04922 430 W 430 (433)
T ss_pred c
Confidence 3
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.66 E-value=3.9e-13 Score=117.33 Aligned_cols=313 Identities=14% Similarity=0.167 Sum_probs=206.0
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.+.+||.|.+|++....| |.+|.-+....+ .++. ...|..+.|||.++||.+-+..
T Consensus 37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l---------------------~~~~--~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG-VECWGGPSKAKL---------------------VRFR--HPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred heeecCcchheehhhccc-eEEccccchhhe---------------------eeee--cCCceecccCcccceeeeeccC
Confidence 467899999999886554 889998755533 2333 3568999999999999986543
Q ss_pred C---------------eEEEEECCCCceEEEeecCCCcc--ee-EEEEecCCCCeEEEEEeCCCeEEEEeccccCcce--
Q 012064 83 R---------------RVILWDWKTERVKLSFHSGHNDN--VF-QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-- 142 (471)
Q Consensus 83 ~---------------~i~iwd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-- 142 (471)
+ .+.+||..+|..+..+ .....+ .+ -+.|+- ++++++-.. ...+.|+++ +.....
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~--~D~y~ARvv-~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSI--DDKYVARVV-GSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeee--cchhhhhhc-cCeEEEEec-CCccccCc
Confidence 3 4999999999998887 343333 44 678888 888877553 347899997 332211
Q ss_pred eeEeeceeeeEEEEEEccCCCc-EEEE-----EecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 143 TKLLGKHQGRAHKLAIEPGSPH-VFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
...+ ....+....|+|.+++ .|+. .+.++.+++|.+..+..+..-...+ ..=..+.|.+.|
T Consensus 168 ~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk----------~~~~qLkW~~~g- 234 (561)
T COG5354 168 FKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK----------VSGVQLKWQVLG- 234 (561)
T ss_pred hhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe----------ecccEEEEecCC-
Confidence 1111 1356788899987432 2222 3567889999998666555443322 123467788874
Q ss_pred ceEEE-Ee----------CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee---CC
Q 012064 217 NLFAV-AG----------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DE 282 (471)
Q Consensus 217 ~~l~~-~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~ 282 (471)
.++++ .- ....+++++++.... +.. ....++|...+|.|.++.+++.+ .-
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--------------~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa 298 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI--------------PVE--KDLKDPVHDFTWEPLSSRFAVISGYMPA 298 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeeccccc--------------cee--ccccccceeeeecccCCceeEEeccccc
Confidence 44432 11 124578888874431 111 13467899999999998776655 33
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
.+.++|++.+. ...+.... -..+.| +|.+++++.++
T Consensus 299 ~~s~~~lr~Nl---------------------------------------~~~~Pe~~----rNT~~f-sp~~r~il~ag 334 (561)
T COG5354 299 SVSVFDLRGNL---------------------------------------RFYFPEQK----RNTIFF-SPHERYILFAG 334 (561)
T ss_pred ceeecccccce---------------------------------------EEecCCcc----cccccc-cCcccEEEEec
Confidence 78899987631 11111111 234455 99999999876
Q ss_pred CC---CeEEEEEccCCeeeE-EecCCCcceEEEEEcCCCCEEEEee------cCCcEEEecCCCCCC
Q 012064 363 DC---GRIFIWKKKGGELIR-VIEADRHVVNCIEPHPHSTVLASSG------IESDIKILTPNAADR 419 (471)
Q Consensus 363 ~d---g~v~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~------~dg~i~iw~~~~~~~ 419 (471)
-| |.+-+||......+. .+.+.. ..-+.|+||++++.+.. .|..|.||++...+.
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 54 789999987654443 555443 56688999999876653 378899999987544
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.66 E-value=2.7e-12 Score=115.90 Aligned_cols=308 Identities=14% Similarity=0.145 Sum_probs=180.1
Q ss_pred EEEecCC----CeEEEEEc--ccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC----C
Q 012064 13 ARTSVDK----ALVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----D 82 (471)
Q Consensus 13 l~~~~~d----g~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~----d 82 (471)
+++|+.+ +.|.+|++ +++++. ...... -......++++|++++|.+... +
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~-------------------~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~ 61 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLT-------------------LVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDS 61 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEE-------------------EEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCce-------------------Eeeeec-CCCCCceEEEEeCCCEEEEEEccccCC
Confidence 3445544 79999998 333332 222222 2344567889999999988766 5
Q ss_pred CeEEEEECCCC--ce--EEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEEEeccccCcceee-Eeec--------
Q 012064 83 RRVILWDWKTE--RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK-LLGK-------- 148 (471)
Q Consensus 83 ~~i~iwd~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~~~-------- 148 (471)
+.|..|++... +. +.+.. .....-..++++| ++++|+++. .+|.+.++++.....+... ....
T Consensus 62 g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 62 GGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred CCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 78999988764 32 22221 1233456789999 999998886 4899999999875433221 1111
Q ss_pred ---eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 149 ---HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 149 ---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
......++.++|+++.++++.-....|.+|++..... +......... .....+.++|+|++....++.-.
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~------~G~GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP------PGSGPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS------TTSSEEEEEE-TTSSEEEEEETT
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc------cCCCCcEEEEcCCcCEEEEecCC
Confidence 1234678999999976555554556899999977652 2111111111 33356889999995555556667
Q ss_pred CCeEEEEEcC--CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCC
Q 012064 225 DEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPS 300 (471)
Q Consensus 225 dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~ 300 (471)
++.|.+|++. .+++...... ..... ..........++++|||++|.++. .+.|.+|+++....
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~------~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g------ 279 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTI------STLPE-GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG------ 279 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE------ESCET-TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT------
T ss_pred CCcEEEEeecccCCceeEEEEe------eeccc-cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC------
Confidence 8889999988 3221100000 00000 011123578899999999988877 45799999843100
Q ss_pred CCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-CCCeEEEEEc--cCCee
Q 012064 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGGEL 377 (471)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~--~~~~~ 377 (471)
....+..+..... ..+.+.+ +|+|++|+++. .++.|.+|++ ++|.+
T Consensus 280 ----------------------------~l~~~~~~~~~G~--~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 280 ----------------------------TLTLVQTVPTGGK--FPRHFAF-SPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp ----------------------------TEEEEEEEEESSS--SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred ----------------------------ceEEEEEEeCCCC--CccEEEE-eCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 0112222222112 1678888 99999999876 4578999976 46655
Q ss_pred eEEec-CCCcceEEEEE
Q 012064 378 IRVIE-ADRHVVNCIEP 393 (471)
Q Consensus 378 ~~~~~-~h~~~v~~~~~ 393 (471)
...-. ..-....|+.|
T Consensus 329 ~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSEEEEEE
T ss_pred EEecccccCCCCEEEeC
Confidence 43322 12234556654
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.8e-14 Score=132.60 Aligned_cols=234 Identities=12% Similarity=0.089 Sum_probs=138.3
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC--CeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
..|.++|... ..... +..+...+.+.+|+|+++.++++...+ ..|++||+.+++...... ....
T Consensus 176 ~~L~~~D~dG-~~~~~--l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----------~~g~ 241 (427)
T PRK02889 176 YQLQISDADG-QNAQS--ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----------FKGS 241 (427)
T ss_pred cEEEEECCCC-CCceE--eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------CCCC
Confidence 3566667633 22222 445777899999999996544443333 469999999886543321 1123
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcC--CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 281 (471)
....+|+||+..++++.+.+|...+|.+. .++. .....+........|+|||+.|+..++
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~----------------~~lt~~~~~~~~~~wSpDG~~l~f~s~~~ 305 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL----------------RRLTQSSGIDTEPFFSPDGRSIYFTSDRG 305 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCc----------------EECCCCCCCCcCeEEcCCCCEEEEEecCC
Confidence 46789999954444566778776666543 3221 111222334456789999998876663
Q ss_pred CcEEEEec--CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 282 EFIYLFTQ--DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 282 ~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
+...+|.+ .++.. ....+.+.. .....| +|||++|+
T Consensus 306 g~~~Iy~~~~~~g~~-------------------------------------~~lt~~g~~----~~~~~~-SpDG~~Ia 343 (427)
T PRK02889 306 GAPQIYRMPASGGAA-------------------------------------QRVTFTGSY----NTSPRI-SPDGKLLA 343 (427)
T ss_pred CCcEEEEEECCCCce-------------------------------------EEEecCCCC----cCceEE-CCCCCEEE
Confidence 34455543 33210 001111211 234566 99999998
Q ss_pred EeeCCC---eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCC---cEEEecCCCCCCcccCcchheeehhh
Q 012064 360 SGSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLPTNIEQAMMMT 433 (471)
Q Consensus 360 ~g~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~ 433 (471)
..+.++ .|++||+.+++.. .+..+ .......|+|||+.|+.++.++ .+.+.++.......+..+.+.+...+
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPS 421 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCc
Confidence 776554 6999999887654 33322 3456789999999887776543 35666665444444444444455444
Q ss_pred HH
Q 012064 434 MT 435 (471)
Q Consensus 434 ~~ 435 (471)
+.
T Consensus 422 ws 423 (427)
T PRK02889 422 WG 423 (427)
T ss_pred cC
Confidence 43
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=6.3e-15 Score=129.02 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=135.8
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC--CeEEEeeCCcEEEEec
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~d~ 289 (471)
.|. +.-++.|-.-|.+.+.|....+....+. ......+..++++.|-|.+ .+|++-.++.+++||.
T Consensus 182 ~~~-g~dllIGf~tGqvq~idp~~~~~sklfn-----------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 182 TPK-GLDLLIGFTTGQVQLIDPINFEVSKLFN-----------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred CCC-CcceEEeeccCceEEecchhhHHHHhhh-----------hcccccccceEEEEEEeCCCceEEEEEecCceEEeec
Confidence 344 5567788888999999987643211110 0111124779999999855 4666667999999987
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
........ .......++....+........+.++..+.-... .|...+| +|||++||+.+.||.+||
T Consensus 250 ~~~~~~t~----------p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRv 316 (636)
T KOG2394|consen 250 EIVCGATA----------PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRI 316 (636)
T ss_pred cccccCCC----------CcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEE
Confidence 33211110 0011111111111111111111223333332223 3889998 999999999999999999
Q ss_pred EEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC-cccCcchheeehhhHHHHH
Q 012064 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQAMMMTMTMMI 438 (471)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~ 438 (471)
||..+.+++..++.--+...|++|||||+++++|++|-.|.||.+...+. ..-.+|...+..++|.++.
T Consensus 317 F~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpyt 386 (636)
T KOG2394|consen 317 FDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYT 386 (636)
T ss_pred eeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccc
Confidence 99999988888888888999999999999999999999999999998776 4556777788888877543
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=2.6e-15 Score=129.06 Aligned_cols=271 Identities=14% Similarity=0.172 Sum_probs=196.2
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 141 (471)
-.-..+.++.+|++|+.|+..|.+-.+|+.+++....+ .-...|.++.|.. +.++++++- ...+.|||-. ..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LH--neq~~AVAQ-K~y~yvYD~~---Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLH--NEQFFAVAQ-KKYVYVYDNN---GT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhc--chHHHHhhh-hceEEEecCC---Cc
Confidence 34567899999999999999999999999999987777 3566899999987 666666654 5688999843 23
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
....+..| ..|..+.|.|.. .+|++++..|.++--|+.+|+.+..+.. ..+.+..++-+|- ...+-+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t----------~~G~~~vm~qNP~-NaVih~ 268 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRT----------GAGRTDVMKQNPY-NAVIHL 268 (545)
T ss_pred EEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHc----------cCCccchhhcCCc-cceEEE
Confidence 32334433 568899999988 8899999999999999999999887754 3446788888998 468889
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~ 300 (471)
|...|+|.+|.....+. ..-+..|.++|.++++.++|+|+++.+ |..++|||++.-..
T Consensus 269 GhsnGtVSlWSP~skeP---------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q------ 327 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEP---------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ------ 327 (545)
T ss_pred cCCCceEEecCCCCcch---------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc------
Confidence 99999999999987652 223445789999999999999999988 66899999987432
Q ss_pred CCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE-ccC--Cee
Q 012064 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK-KKG--GEL 377 (471)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd-~~~--~~~ 377 (471)
+..+.. +.....+++ |..| .||. +....|.||. ... +..
T Consensus 328 --------------------------------l~t~~t---p~~a~~ls~-Sqkg-lLA~-~~G~~v~iw~d~~~~s~~~ 369 (545)
T KOG1272|consen 328 --------------------------------LHTYRT---PHPASNLSL-SQKG-LLAL-SYGDHVQIWKDALKGSGHG 369 (545)
T ss_pred --------------------------------cceeec---CCCcccccc-cccc-ceee-ecCCeeeeehhhhcCCCCC
Confidence 222222 112445666 5554 3443 3445799995 222 122
Q ss_pred eEEecCC--CcceEEEEEcCCCCEEEEeecCCcEEEe
Q 012064 378 IRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKIL 412 (471)
Q Consensus 378 ~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (471)
...+-.| .+.|..+.|.|-...|-.|-..|--.|.
T Consensus 370 ~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 370 ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred CcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 2223233 3589999999977666555544443333
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=1.2e-12 Score=118.24 Aligned_cols=297 Identities=13% Similarity=0.167 Sum_probs=174.1
Q ss_pred EEEecCC----CeEEEEEC--CCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC----CCeEEEEecccc--Cccee
Q 012064 76 LISGSDD----RRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILER--GGVET 143 (471)
Q Consensus 76 l~s~~~d----~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~~ 143 (471)
++.|+.. +.|.+|++ ++++....-..........++++| ++++|+++.. ++.|..|++... .....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 3455554 68888888 444432211112334556688999 9999998876 478999998765 22222
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC-ccceeeeeccc---CCcCcceeeeeeEEEEEcCCCCceE
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPI---DDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
............++++|++..++++...+|.+.++++... ........... .............++.++|++..++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 2222233455679999999766666667999999999874 33322111100 0000011233567899999954444
Q ss_pred EEEeCCCeEEEEEcCCCc--cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCC-
Q 012064 220 AVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLG- 294 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~- 294 (471)
++.-....|++|++.... +... ...........+.+.|+|+++++.... ++.|.+|++.....
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~------------~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPV------------DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEE------------EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEecCCCEEEEEEEeCCCceEEEe------------eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 444455689999997654 2110 111122345678999999999887776 55799998872110
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeeeeCCCCcEEEEee-CCCeEEEEEc
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK 372 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~ 372 (471)
... ...+..+. +.........+.+ +|||++|++.. .++.|.+|++
T Consensus 228 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 228 LTE--------------------------------IQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEE--------------------------------EEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEE
T ss_pred eeE--------------------------------EEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEE
Confidence 000 00001110 0111112567777 99999988765 4578999999
Q ss_pred c--CC--eeeEEecCCCcceEEEEEcCCCCEEEEee-cCCcEEEecCC--CCCC
Q 012064 373 K--GG--ELIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN--AADR 419 (471)
Q Consensus 373 ~--~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~--~~~~ 419 (471)
. ++ +.+..+.........++++|+|++|+++. .++.|.+|+++ ++.+
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 3 23 33344444444589999999999888776 56789999774 4444
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.4e-13 Score=121.76 Aligned_cols=283 Identities=13% Similarity=0.129 Sum_probs=190.0
Q ss_pred CCCCCCCCcE-EEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc--cccEEEEEEcCCCCEEEEe
Q 012064 3 DASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH--RGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 3 ~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~~~~s~~g~~l~s~ 79 (471)
.+..+|||++ +|+|...-.|++||+..-.+ .+.-| ...|.-.-++-|-..++--
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------KFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------KFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEccccee-----------------------eeeecccccceeEEEeccchhhheEe
Confidence 3557899998 66788889999999983221 23333 3445444555555555555
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
..|.+|.+-. ..|.. ..+ .-...-.+++++. -..-|+.++....|+-++++.+..+.. +....+.++++..+
T Consensus 113 ~~DR~IefHa-k~G~h-y~~--RIP~~GRDm~y~~--~scDly~~gsg~evYRlNLEqGrfL~P--~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 113 QNDRTIEFHA-KYGRH-YRT--RIPKFGRDMKYHK--PSCDLYLVGSGSEVYRLNLEQGRFLNP--FETDSGELNVVSIN 184 (703)
T ss_pred ecCceeeehh-hcCee-eee--ecCcCCccccccC--CCccEEEeecCcceEEEEccccccccc--cccccccceeeeec
Confidence 6677776544 22322 111 1122334566665 233344444445688888888877665 66566889999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeeccc-CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
+-. .+|++|+.+|.+..||.++...+..+..... ...++......|+++.|+.+ |-.+++|+..|.+.+||++..+.
T Consensus 185 ~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 185 EEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred Ccc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCc
Confidence 988 5889999999999999999988877765433 22222223446999999988 78999999999999999998762
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC--CCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
. ..--.....+|..+.|.+. +..+++.....++|||-.+++....
T Consensus 263 l--------------~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~as------------------- 309 (703)
T KOG2321|consen 263 L--------------LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMAS------------------- 309 (703)
T ss_pred e--------------eecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceee-------------------
Confidence 1 1111223567889999876 4567777777899999888643322
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
..... .+..+|+ -|++.+++++.+++.+..|=+..
T Consensus 310 -------------------iEpt~---~lND~C~-~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 310 -------------------IEPTS---DLNDFCF-VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred -------------------ccccC---CcCceee-ecCCceEEEecCCCcceeEEccc
Confidence 11111 2777887 78889999999988887776543
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.3e-13 Score=112.56 Aligned_cols=155 Identities=12% Similarity=0.135 Sum_probs=105.9
Q ss_pred EEEEEcCCCCceEEEEeC---------CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE
Q 012064 207 NAIAIDPRNANLFAVAGS---------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (471)
..+.|+|+|..+++.... -|...+|.++..... ...+.....++|.+++|+|+|+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-------------~~~i~l~~~~~I~~~~WsP~g~~fa 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-------------VESIELKKEGPIHDVAWSPNGNEFA 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-------------cceeeccCCCceEEEEECcCCCEEE
Confidence 568899985444444431 234566666443210 1112222345699999999999876
Q ss_pred Eee---CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC
Q 012064 278 SYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (471)
Q Consensus 278 ~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 354 (471)
... ...+.+||++. ..+..+.. .. +..+.| +|+
T Consensus 76 vi~g~~~~~v~lyd~~~---------------------------------------~~i~~~~~--~~--~n~i~w-sP~ 111 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVKG---------------------------------------KKIFSFGT--QP--RNTISW-SPD 111 (194)
T ss_pred EEEccCCcccEEEcCcc---------------------------------------cEeEeecC--CC--ceEEEE-CCC
Confidence 543 34799999852 12233322 22 667888 999
Q ss_pred CcEEEEeeC---CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec------CCcEEEecCCCCCCc
Q 012064 355 CEYVVSGSD---CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAADRA 420 (471)
Q Consensus 355 g~~l~~g~~---dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~~~ 420 (471)
|++|++|+. .|.|.+||..+.+.+.... |. .++.++|+|||++|+++.. |+.++||+.......
T Consensus 112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 999998864 4779999999888887765 33 4789999999999998864 788999999865443
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=3.9e-13 Score=127.11 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=124.9
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeE
Q 012064 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (471)
Q Consensus 6 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i 85 (471)
++++.-++++|+.-+.|.+|+...-... ..+.||.+.|..+.++-||+++++.|.|+++
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsi 199 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKP---------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSI 199 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCc---------------------ceecccCCceEEEEEccCCcEEEEEecCcce
Confidence 5677788999999999999998822222 3688999999999999999999999999999
Q ss_pred EEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee-eeEEEEEEccCCCc
Q 012064 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPH 164 (471)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 164 (471)
++|++++.+......-+|...|+.++|.| + .+++++.|.+.++|+....... .+.+|. ..+..++..++. .
T Consensus 200 RlW~i~s~~~~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctcrvW~~~~~~l~---~y~~h~g~~iw~~~~~~~~-~ 271 (967)
T KOG0974|consen 200 RLWPIDSREVLGCTGFGHSARVWACCFLP--N--RIITVGEDCTCRVWGVNGTQLE---VYDEHSGKGIWKIAVPIGV-I 271 (967)
T ss_pred eeeecccccccCcccccccceeEEEEecc--c--eeEEeccceEEEEEecccceeh---hhhhhhhcceeEEEEcCCc-e
Confidence 99999998877644468999999999998 5 9999999999999976443332 255554 468889998887 6
Q ss_pred EEEEEecCCeEEEEeccCC
Q 012064 165 VFYTCGEDGLVQHFDLRTG 183 (471)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~ 183 (471)
+.++++.|+.+++||+...
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEeeccCcchhhhhhhcc
Confidence 8899999999999998654
No 243
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.7e-13 Score=116.04 Aligned_cols=318 Identities=13% Similarity=0.162 Sum_probs=196.4
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC--
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-- 81 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~-- 81 (471)
+.+||.|.+|++=-.-| |.+|--++-... +++. |. .|.-+.|||..+||+|-+.
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~---------------------~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p 271 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRI---------------------QRFY-HP-GVQFIDFSPNEKYLVTYSPEP 271 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHH---------------------Hhcc-CC-CceeeecCCccceEEEecCCc
Confidence 45899999999876555 789986643333 3443 43 4788999999999998653
Q ss_pred ---------CCeEEEEECCCCceEEEeec--CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee
Q 012064 82 ---------DRRVILWDWKTERVKLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 82 ---------d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
...++|||+.+|...+.+.. .....-.-..||. |++++|--..+ .|.|++..+......+.+ ..
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~~-sisIyEtpsf~lld~Ksl--ki 346 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTGN-SISIYETPSFMLLDKKSL--KI 346 (698)
T ss_pred cccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEeccc-eEEEEecCceeeeccccc--CC
Confidence 25799999999999888743 2222223468998 99999987764 789998766444333222 23
Q ss_pred eeEEEEEEccCCCcEEEEEec-----CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE---
Q 012064 151 GRAHKLAIEPGSPHVFYTCGE-----DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--- 222 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--- 222 (471)
..|....|+|.+ ++|+-=+. -..+.+..+.+++.++...... ..=..+-|-.+ |.+|..-
T Consensus 347 ~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn----------VsDckLhWQk~-gdyLcvkvdR 414 (698)
T KOG2314|consen 347 SGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN----------VSDCKLHWQKS-GDYLCVKVDR 414 (698)
T ss_pred ccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeecccee----------eeccEEEeccC-CcEEEEEEEe
Confidence 568889999987 45442111 1234444444444333322211 11122344444 4555431
Q ss_pred -------eCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC----CcEEEEecCC
Q 012064 223 -------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDM 291 (471)
Q Consensus 223 -------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~i~i~d~~~ 291 (471)
+.-..+.|+.++.... |.. .-.-...|...+|-|.|..++.-+. .++.+|.+++
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdI--------------pve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDI--------------PVE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred eccccccceEeeEEEEEeeccCC--------------Cce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 1122356666665442 111 1122567899999999987766542 2688888774
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe---eCCCeEE
Q 012064 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG---SDCGRIF 368 (471)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g---~~dg~v~ 368 (471)
.... ...+..+... ..+.+.| +|.|++++.+ |..|.+.
T Consensus 480 ~~~~----------------------------------~~lVk~~dk~----~~N~vfw-sPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 480 NIKK----------------------------------PSLVKELDKK----FANTVFW-SPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred CCCc----------------------------------hhhhhhhccc----ccceEEE-cCCCcEEEEEEecccccceE
Confidence 2100 1222333321 2566777 9999999875 4578999
Q ss_pred EEEccCCeeeEEe-cCCCcceEEEEEcCCCCEEEEeec------CCcEEEecCCCC
Q 012064 369 IWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAA 417 (471)
Q Consensus 369 iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~ 417 (471)
++|+.-......- ..|. ..+.+.|.|.|+|+++++. |.--+||++++.
T Consensus 521 F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 9998643322221 1232 5688999999999999875 556778887754
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=9.6e-13 Score=123.27 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=144.5
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
...|.++|...++. ..+ ..+...+...+|+| |+++|+.+..+ ..|++||+.+++... +..+...+.+++|
T Consensus 169 ~~~l~~~d~~g~~~-~~l-~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~ 241 (417)
T TIGR02800 169 RYELQVADYDGANP-QTI-TRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAF 241 (417)
T ss_pred cceEEEEcCCCCCC-EEe-ecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEE
Confidence 34688888764443 444 35666788999999 99999887643 479999998765433 3334556677899
Q ss_pred ccCCCcEEEEEecCC--eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCC--eEEEEEc
Q 012064 159 EPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE--YTRLYDI 233 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~ 233 (471)
+|+++.++++.+.++ .|++||+.++....... +........|+|+ +..|+..+ .++ .|+++|+
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-----------GPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-----------CCCCCCCEEECCC-CCEEEEEECCCCCceEEEEEC
Confidence 999976666666554 58889988775433221 1112345689998 45555443 343 5777787
Q ss_pred CCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC----cEEEEecCCCCCCCCCCCCCccccccc
Q 012064 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~~~~~ 309 (471)
.+.+.. ....+........|+|+|++++..+.+ .|.+||+.++..
T Consensus 310 ~~~~~~----------------~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--------------- 358 (417)
T TIGR02800 310 DGGEVR----------------RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--------------- 358 (417)
T ss_pred CCCCEE----------------EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---------------
Confidence 654311 111123345678899999998877633 588888765311
Q ss_pred cccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC---eEEEEEccCCeeeEEecCCCc
Q 012064 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRH 386 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg---~v~iwd~~~~~~~~~~~~h~~ 386 (471)
..+..... .....| +|||++|+..+.++ .+++.+. +++....+..+.+
T Consensus 359 ------------------------~~l~~~~~---~~~p~~-spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g 409 (417)
T TIGR02800 359 ------------------------RVLTDTGL---DESPSF-APNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNG 409 (417)
T ss_pred ------------------------EEccCCCC---CCCceE-CCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCC
Confidence 11111111 223456 99999888776653 4566664 4555555555555
Q ss_pred ceEEEEE
Q 012064 387 VVNCIEP 393 (471)
Q Consensus 387 ~v~~~~~ 393 (471)
.+..++|
T Consensus 410 ~~~~~~w 416 (417)
T TIGR02800 410 DVREPAW 416 (417)
T ss_pred CcCCCCC
Confidence 5555555
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=1.2e-13 Score=114.57 Aligned_cols=262 Identities=12% Similarity=0.197 Sum_probs=168.0
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc------------cccEEEEEEc
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH------------RGCVNTVSFN 70 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h------------~~~V~~~~~s 70 (471)
.+-|...|.+||+|..+|.|-++..+....- .+.....++.| ...|..+.|.
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~----------------ey~~~t~fqshepEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKG----------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeeccccccc----------------ceeeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence 3567889999999999999999987632210 11111223333 3568889998
Q ss_pred CCCC--EEEEecCCCeEEEEECCCCce-----------------------------------EEEeecCCCcceeEEEEe
Q 012064 71 TDGD--ILISGSDDRRVILWDWKTERV-----------------------------------KLSFHSGHNDNVFQAKIM 113 (471)
Q Consensus 71 ~~g~--~l~s~~~d~~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~ 113 (471)
+++. .++..+.|.+|++|.+..... .+.+..+|...|+++.++
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 8763 556667889999998753211 122234688899999999
Q ss_pred cCCCCeEEEEEeCCCeEEEEeccccCcce-eeEee-----ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc-
Q 012064 114 PFTDDRSIVTCAADGQVRHAQILERGGVE-TKLLG-----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT- 186 (471)
Q Consensus 114 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~- 186 (471)
. |...++++. |=.|.+|+++-...-. ...++ .-...|++..|+|...++|+-++..|+|++-|++....-
T Consensus 174 s--D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 174 S--DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred C--ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 8 999988876 6689999986443221 11111 223568899999988888999999999999999954321
Q ss_pred ---eeeeecccCCcCcc--eeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCC--
Q 012064 187 ---ELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-- 259 (471)
Q Consensus 187 ---~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 259 (471)
+.+..+..+..+.. .-...|..+.|+++ |+++++-.. -+|++||+..... |+..+........
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~--------pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAK--------PVETYPVHEYLRSKL 320 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCC--------cceEEeehHhHHHHH
Confidence 11211111111000 01246889999998 688876443 5899999965421 2211111110000
Q ss_pred ----Ccc---ceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 260 ----EQV---GITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 260 ----~~~---~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
... .-..++|+.++.++.+|+ .+-.++|+...+.
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 011 225688999999999999 5578999966553
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=128.93 Aligned_cols=281 Identities=14% Similarity=0.096 Sum_probs=191.0
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecC----CCCeEEEEEeCCCeEEEEec
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF----TDDRSIVTCAADGQVRHAQI 135 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~ 135 (471)
|-+++.+.++-. ++|+.|. ...|.+||+.++..+..+...+--.+. .+. -.+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecch
Confidence 334555555533 5666554 357999999988765544222211111 110 03345666655444433222
Q ss_pred cccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC
Q 012064 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (471)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (471)
.... .....+.+....+..+. ..++..+.++.+.+||...+.......+.+.. .-....-+-++++
T Consensus 79 ~~~~------~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------~l~~~~~~g~s~~- 144 (967)
T KOG0974|consen 79 SNQI------IERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------TLYSSLIIGDSAE- 144 (967)
T ss_pred hhhh------hhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceE------EEEeEEEEeccCc-
Confidence 1111 11223344445555555 45788888899999999888766655443211 1111222344565
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLG 294 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~ 294 (471)
.-++++|+.-+.|.+|+....+ ......+|.+.|.++.|+-||+++++.+++ .+++|++++.+.
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EEEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence 6789999999999999998332 122577899999999999999999999977 799999988532
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
.....-+|... +..++| .|+ .++++++|.+.++|+. .
T Consensus 210 -------------------------------------~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~-~ 246 (967)
T KOG0974|consen 210 -------------------------------------LGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGV-N 246 (967)
T ss_pred -------------------------------------cCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEec-c
Confidence 22355678776 889998 787 9999999999999976 5
Q ss_pred CeeeEEecCCCc-ceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 375 GELIRVIEADRH-VVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 375 ~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
++.+..+.+|.+ .|..++..++...++|++.|+.+++|++.....
T Consensus 247 ~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 247 GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 566668888875 799999999999999999999999999986543
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=9.7e-13 Score=122.63 Aligned_cols=235 Identities=14% Similarity=0.120 Sum_probs=143.9
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-C--eEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-G--QVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.|.++|....+. ..+ ..+...+.+..|+| ||+.|+..+.+ + .|.+||+.+++... +..........+|+|
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~---lt~~~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREK---VTSFPGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEE---ecCCCCCcCCeeECC
Confidence 677778765443 334 45677889999999 99998876543 3 58888887765433 222223345689999
Q ss_pred CCCcEEEEEecCCe--EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC--eEEEEEcCCC
Q 012064 161 GSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY 236 (471)
Q Consensus 161 ~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~ 236 (471)
+++.++++.+.++. |+++|+++++...... +.......+|+||+..++++...++ .|+++|+.++
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99777667777775 7888888776433221 1123466789999544444444444 4666677655
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CC--cEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
+.. .+. .........+|+|||++|+..+ .+ .|.++|+.++..
T Consensus 341 ~~~---------------~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------------ 386 (448)
T PRK04792 341 KVS---------------RLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------------ 386 (448)
T ss_pred CEE---------------EEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe------------------
Confidence 421 010 0111223468999999887765 23 466677665421
Q ss_pred CCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC-C--eEEEEEccCCeeeEEecCCCcceE
Q 012064 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-G--RIFIWKKKGGELIRVIEADRHVVN 389 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~ 389 (471)
..+..... .....| +|||++|+..+.+ | .+++++. +|+....+..+.+.+.
T Consensus 387 ---------------------~~lt~~~~---d~~ps~-spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~ 440 (448)
T PRK04792 387 ---------------------QVLTSTRL---DESPSV-APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK 440 (448)
T ss_pred ---------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 11111100 112346 9999988765543 3 4777887 6667777776667788
Q ss_pred EEEEcCC
Q 012064 390 CIEPHPH 396 (471)
Q Consensus 390 ~~~~s~~ 396 (471)
..+|+|-
T Consensus 441 ~p~Wsp~ 447 (448)
T PRK04792 441 SPAWSPF 447 (448)
T ss_pred CCccCCC
Confidence 8899873
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.57 E-value=3.5e-11 Score=105.64 Aligned_cols=275 Identities=12% Similarity=0.074 Sum_probs=166.6
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC----------CCeEEEEeccccCcceeeEeece---
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH--- 149 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~--- 149 (471)
++|.+.|..+++.+..+..+..... + ++| |++.++.+.. +..|.+||..+.+.+....+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 7899999999998888865544333 4 899 9998887665 68999999999887765333211
Q ss_pred --eeeEEEEEEccCCCcEEEEEec-CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC
Q 012064 150 --QGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (471)
Q Consensus 150 --~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (471)
......++++|+|+.++++--. +..+.+.|+.+++.+..+.... ...-...+++ ..+ .-+.||
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----------~~~vy~t~e~-~~~--~~~~Dg 167 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----------CYHIFPTAND-TFF--MHCRDG 167 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----------CcEEEEecCC-ccE--EEeecC
Confidence 1223478999999644444424 7899999999999888776421 1111112221 111 122333
Q ss_pred eEEEEEcCCCccCCCCCCCCCCCcCCC-CcccCCCccceEEEEEcC-CCCeEEEeeCCcEEEEecCCCCCCCCCCCCCcc
Q 012064 227 YTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVS 304 (471)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 304 (471)
......+......... ..++ +.. ..... ..+ .|.+ +|+++....+|+|++.|+........
T Consensus 168 ~~~~v~~d~~g~~~~~--~~~v--f~~~~~~v~--~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~------- 230 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIK--PTEV--FHPEDEYLI--NHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFL------- 230 (352)
T ss_pred ceEEEEecCCCceEEe--eeee--ecCCccccc--cCC----ceEcCCCcEEEEecCCeEEEEecCCCcceec-------
Confidence 3333222221100000 0000 000 00000 111 3455 88888887789999999755321111
Q ss_pred ccccccccCCCCCCccCCCCCCcccccCCeeeec-----CCceeEeeeeeeeCCCCcEEEEee----------CCCeEEE
Q 012064 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-----HRNCVTVKGVNFFGPKCEYVVSGS----------DCGRIFI 369 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~s~~g~~l~~g~----------~dg~v~i 369 (471)
.....+.. .-.+.....+++ +++++.++... ..+.|.+
T Consensus 231 --------------------------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 231 --------------------------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred --------------------------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEEE
Confidence 00111100 001111344777 99999888742 1258999
Q ss_pred EEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEee-cCCcEEEecCCCCCCcc
Q 012064 370 WKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRAT 421 (471)
Q Consensus 370 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~ 421 (471)
+|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+++...
T Consensus 284 iD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 284 VDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 99999999988864 34799999999999 777666 57889999999886643
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=1.8e-12 Score=121.43 Aligned_cols=222 Identities=15% Similarity=0.146 Sum_probs=136.4
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC--CeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
.|.++|...... . .+..+...+...+|+|+++.++++...+ ..|++||+.+++...... .....
T Consensus 171 ~l~~~d~~g~~~-~--~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-----------~~~~~ 236 (417)
T TIGR02800 171 ELQVADYDGANP-Q--TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-----------FPGMN 236 (417)
T ss_pred eEEEEcCCCCCC-E--EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-----------CCCCc
Confidence 577777653332 2 2445666788999999996554443332 479999998876543222 11234
Q ss_pred EEEEEcCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--C
Q 012064 207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~ 282 (471)
.+++|+|++..++++.+.++ .|++||+.+++... ...+........|+|+|+.|+..++ +
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----------------l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----------------LTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----------------CCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 56899999544445555544 58888987654211 1111222345689999998876653 2
Q ss_pred --cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 283 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
.|+++++.++. ...+..+... .....| +|+|++++.
T Consensus 301 ~~~iy~~d~~~~~---------------------------------------~~~l~~~~~~--~~~~~~-spdg~~i~~ 338 (417)
T TIGR02800 301 SPQIYMMDADGGE---------------------------------------VRRLTFRGGY--NASPSW-SPDGDLIAF 338 (417)
T ss_pred CceEEEEECCCCC---------------------------------------EEEeecCCCC--ccCeEE-CCCCCEEEE
Confidence 57777776531 1112211111 455677 999999998
Q ss_pred eeCCC---eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCC---cEEEecCCCCCCcccCc
Q 012064 361 GSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLPT 424 (471)
Q Consensus 361 g~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~ 424 (471)
++.++ .|.+||+.++.. ..+... .......|+||+++|+..+.++ .+++.+........+..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred EEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 87765 789999877543 333322 2345678999999888776653 46666766554444443
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.1e-12 Score=120.39 Aligned_cols=233 Identities=15% Similarity=0.115 Sum_probs=138.3
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC--eEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
.+.++|....... .+..+...+....|+|||+.++++...++ .|++||+.+++....... ....
T Consensus 199 ~l~i~d~dG~~~~---~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----------~g~~ 264 (448)
T PRK04792 199 QLMIADYDGYNEQ---MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----------PGIN 264 (448)
T ss_pred EEEEEeCCCCCce---EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----------CCCc
Confidence 5666676444332 24556678889999999976555544443 588999988765332211 1123
Q ss_pred EEEEEcCCCCceEEEEeCCCe--EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--C
Q 012064 207 NAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~ 282 (471)
...+|+||+..++++...+|. |+++|+.+++.. ....+.......+|+|||+.|+..++ +
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g 328 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----------------RITRHRAIDTEPSWHPDGKSLIFTSERGG 328 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----------------ECccCCCCccceEECCCCCEEEEEECCCC
Confidence 467999995445455666665 777788765421 11112334567899999998876653 3
Q ss_pred --cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 283 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
.++++|+.++... ...+.+.. .....| +|||++|+.
T Consensus 329 ~~~Iy~~dl~~g~~~-------------------------------------~Lt~~g~~----~~~~~~-SpDG~~l~~ 366 (448)
T PRK04792 329 KPQIYRVNLASGKVS-------------------------------------RLTFEGEQ----NLGGSI-TPDGRSMIM 366 (448)
T ss_pred CceEEEEECCCCCEE-------------------------------------EEecCCCC----CcCeeE-CCCCCEEEE
Confidence 4777777654210 01112211 223466 999999887
Q ss_pred eeCC-C--eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec-CC--cEEEecCCCCCCcccCcchheeehhhH
Q 012064 361 GSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI-ES--DIKILTPNAADRATLPTNIEQAMMMTM 434 (471)
Q Consensus 361 g~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
.+.+ + .|.++|+.+++.. .+... .......|+|||+.|+..+. ++ .+++++.+......++.+...+..+.|
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~W 444 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAW 444 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCcc
Confidence 6543 3 5666788777543 33322 12335689999997776554 33 377788876655555544444444444
Q ss_pred H
Q 012064 435 T 435 (471)
Q Consensus 435 ~ 435 (471)
.
T Consensus 445 s 445 (448)
T PRK04792 445 S 445 (448)
T ss_pred C
Confidence 3
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.1e-12 Score=120.99 Aligned_cols=235 Identities=9% Similarity=0.082 Sum_probs=145.9
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.|.++|.+.++. ..+ ..+...+...+|+| ||+.|+..+.+ ..|.+|++.+++... +....+......|+|
T Consensus 180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTL-LQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEE-ecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECC
Confidence 577888775543 444 35667889999999 99998876543 368899997765433 333334455789999
Q ss_pred CCCcEEEEEecCC--eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC--eEEEEEcCCC
Q 012064 161 GSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY 236 (471)
Q Consensus 161 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~ 236 (471)
+|++++++...+| .|++||+++++...... +........|+|++..++++...+| .|+++++.++
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-----------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEccc-----------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9976666666655 68888998876433221 1123456789999544444444444 5777777665
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--C--cEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
+... +.. .........|+|+|++|+..+. + .+.++|+.++..
T Consensus 322 ~~~~---------------lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------------ 367 (430)
T PRK00178 322 RAER---------------VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------------ 367 (430)
T ss_pred CEEE---------------eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------------
Confidence 4211 000 0112235689999999887652 2 488888876421
Q ss_pred CCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC---CeEEEEEccCCeeeEEecCCCcceE
Q 012064 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVN 389 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~ 389 (471)
..+..... .....| +|||++++..+.+ ..++++++. +.....+..+.+.+.
T Consensus 368 ---------------------~~lt~~~~---~~~p~~-spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 368 ---------------------RILTDTSL---DESPSV-APNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred ---------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 11111001 113356 9999999876543 357777774 444555665666778
Q ss_pred EEEEcCC
Q 012064 390 CIEPHPH 396 (471)
Q Consensus 390 ~~~~s~~ 396 (471)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 8888874
No 252
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=6.7e-13 Score=108.32 Aligned_cols=151 Identities=11% Similarity=0.197 Sum_probs=104.4
Q ss_pred EEEEEcCCCCEEEEecC----------CCeEEEEECCC-CceEEEeecCCCcceeEEEEecCCCCeEEEEE--eCCCeEE
Q 012064 65 NTVSFNTDGDILISGSD----------DRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC--AADGQVR 131 (471)
Q Consensus 65 ~~~~~s~~g~~l~s~~~----------d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~ 131 (471)
..+.|+|+|++|+.-.. -+...+|.+.. +.....+.....++|.+++|+| +++.|++. ..++.+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP--~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP--NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc--CCCEEEEEEccCCcccE
Confidence 46789999987764322 23455665532 2333444334556799999999 99887655 3567999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEec---CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
+||++ .+.+ ..-+...+..+.|+|+|+ ++++++. .|.|.+||.++.+.+.... + ..+..
T Consensus 87 lyd~~-~~~i----~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----------~-~~~t~ 148 (194)
T PF08662_consen 87 LYDVK-GKKI----FSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFE-----------H-SDATD 148 (194)
T ss_pred EEcCc-ccEe----EeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeeccc-----------c-CcEEE
Confidence 99995 2222 222456778999999995 5666653 4679999999777765543 2 24689
Q ss_pred EEEcCCCCceEEEEeC------CCeEEEEEcCCC
Q 012064 209 IAIDPRNANLFAVAGS------DEYTRLYDIRKY 236 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~------dg~i~i~d~~~~ 236 (471)
++|+|+ |++|+++.. |..++||+....
T Consensus 149 ~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 149 VEWSPD-GRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEcCC-CCEEEEEEeccceeccccEEEEEecCe
Confidence 999999 678877763 678999998644
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.1e-12 Score=119.87 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=140.4
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC--CeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
.|.++|....... .+..+...+....|+|+++.++++...+ ..|.+||+.+++...... .....
T Consensus 180 ~l~~~d~~g~~~~---~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-----------~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGARAV---TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-----------FEGLN 245 (430)
T ss_pred EEEEECCCCCCce---EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-----------CCCCc
Confidence 4777777544332 2445667889999999996555554333 369999998886543221 11124
Q ss_pred EEEEEcCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--C
Q 012064 207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~ 282 (471)
....|+|++..++++...+| .|++||+.+++.. ....+........|+|||+.|+..++ +
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----------------EcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 46899999544444555555 5888898876421 11112233456789999998776653 2
Q ss_pred --cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 283 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
.|+++++.++.... ..+.+.. .....| +|||++|+.
T Consensus 310 ~~~iy~~d~~~g~~~~-------------------------------------lt~~~~~----~~~~~~-Spdg~~i~~ 347 (430)
T PRK00178 310 KPQIYKVNVNGGRAER-------------------------------------VTFVGNY----NARPRL-SADGKTLVM 347 (430)
T ss_pred CceEEEEECCCCCEEE-------------------------------------eecCCCC----ccceEE-CCCCCEEEE
Confidence 47777876542100 0111111 223456 999999987
Q ss_pred eeCC-C--eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecC---CcEEEecCCCCCCcccCcchheeehhhH
Q 012064 361 GSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQAMMMTM 434 (471)
Q Consensus 361 g~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
.+.+ + .|.++|+.+++.. .+.. ........|+|||+.++.++.+ ..|.++++.......++.....+....|
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~w 425 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSW 425 (430)
T ss_pred EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCcc
Confidence 6543 3 5889999887643 3322 2233456899999988766543 3577888876555455544444444444
Q ss_pred H
Q 012064 435 T 435 (471)
Q Consensus 435 ~ 435 (471)
.
T Consensus 426 s 426 (430)
T PRK00178 426 S 426 (430)
T ss_pred C
Confidence 3
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.55 E-value=4.5e-12 Score=103.16 Aligned_cols=206 Identities=16% Similarity=0.202 Sum_probs=146.2
Q ss_pred cccEEEEEEcC---CCC-EEEEecCCCeEEEEECCCCceEEEeecCCC------cceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 61 RGCVNTVSFNT---DGD-ILISGSDDRRVILWDWKTERVKLSFHSGHN------DNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 61 ~~~V~~~~~s~---~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
+..+..+.|.. +|. .|+-+..+|.|.++.....+....+ .+-. ....++.|++ .+..++++..+|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeec--cCceEEEEcCCCcE
Confidence 45566677753 455 5667778899999987655443333 2211 1245778998 88889999999999
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
.+-+...........++.|+.+++...|+...++++++|+.|+.+..||+|..+ ...+... ..|...|.++.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~-------kvH~~GV~SI~ 217 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNS-------KVHTSGVVSIY 217 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecc-------eeeecceEEEe
Confidence 866655554444345889999999999999888999999999999999999433 1222211 11777899999
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC--CeEEEeeCCcEEEEe
Q 012064 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFT 288 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~d 288 (471)
-+|..+.++++|+.|..|++||.|+... |.. ...-.+.|+.+.++|.- ++|+++-.+..++.+
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl~-------~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGK--------PLF-------KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccC--------ccc-------cCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 9988789999999999999999996531 111 11224789999999954 455555566667776
Q ss_pred cCCC
Q 012064 289 QDMG 292 (471)
Q Consensus 289 ~~~~ 292 (471)
...+
T Consensus 283 ~~~~ 286 (339)
T KOG0280|consen 283 SSDK 286 (339)
T ss_pred eccc
Confidence 6553
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.54 E-value=8.9e-11 Score=103.15 Aligned_cols=279 Identities=12% Similarity=0.123 Sum_probs=162.9
Q ss_pred CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC----------CCeEEEEE
Q 012064 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----------DRRVILWD 89 (471)
Q Consensus 20 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~----------d~~i~iwd 89 (471)
++|.+.|.++++.+ ..+..-..+- .+ +||||+.|+.+.. +..|.+||
T Consensus 27 ~~v~ViD~~~~~v~---------------------g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 27 TQVYTIDGEAGRVL---------------------GMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred ceEEEEECCCCEEE---------------------EEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 89999999987766 3444322222 24 9999998887765 67899999
Q ss_pred CCCCceEEEeecCCC------cceeEEEEecCCCCeEEEEEeC--CCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 90 WKTERVKLSFHSGHN------DNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
..+.+.+.++..+-+ ..-..++++| ||++++.... +..+.+.|+.+++.+....... ...-...+++
T Consensus 84 ~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~---~~~vy~t~e~ 158 (352)
T TIGR02658 84 PQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD---CYHIFPTAND 158 (352)
T ss_pred CccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC---CcEEEEecCC
Confidence 999999888853322 1234778999 9999997763 6899999998888766532211 1111122222
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeeccc-CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
. +.+-+.||......+.+......-. .+. ..........+ .|.+.++.++.+..+ |.|.+.|+...+...
T Consensus 159 ~---~~~~~~Dg~~~~v~~d~~g~~~~~~-~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~ 229 (352)
T TIGR02658 159 T---FFMHCRDGSLAKVGYGTKGNPKIKP-TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF 229 (352)
T ss_pred c---cEEEeecCceEEEEecCCCceEEee-eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence 1 1223344444443333222211110 000 00000000111 445623566666665 999999976543221
Q ss_pred CCCCCCCCCcCCCCcc-cCCCccceEEEEEcCCCCeEEEee-----------CCcEEEEecCCCCCCCCCCCCCcccccc
Q 012064 241 STDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-----------~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 308 (471)
...+ ........ ..-..+...-++++|+++.+.... .+.|.++|..++
T Consensus 230 ~~~~----~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------------- 289 (352)
T TIGR02658 230 LPAI----EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------------- 289 (352)
T ss_pred ccee----eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----------------
Confidence 1110 00000000 001233344599999998877632 146899998774
Q ss_pred ccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc-EEEEee-CCCeEEEEEccCCeeeEEe
Q 012064 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIFIWKKKGGELIRVI 381 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~-~l~~g~-~dg~v~iwd~~~~~~~~~~ 381 (471)
+.+..+.-.. .+..+++ +||++ +|++.. .++.|.++|..+++.++.+
T Consensus 290 ----------------------kvi~~i~vG~---~~~~iav-S~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 290 ----------------------KRLRKIELGH---EIDSINV-SQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ----------------------eEEEEEeCCC---ceeeEEE-CCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2333333222 2778888 99999 777665 5788999999999999887
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2.2e-10 Score=96.72 Aligned_cols=302 Identities=14% Similarity=0.137 Sum_probs=182.9
Q ss_pred CCeEEEEEccc--CccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC---CeEEEEECCC-
Q 012064 19 KALVDVWLREL--GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD---RRVILWDWKT- 92 (471)
Q Consensus 19 dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d---~~i~iwd~~~- 92 (471)
+.-|.+|++++ |++.. ..+-.+.+..+-|+|+|++++|.++..+ |.|.-|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~--------------------~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~ 74 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL--------------------LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD 74 (346)
T ss_pred CCceEEEEEeCcccccch--------------------hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC
Confidence 56799999884 22221 1233567788999999999999887654 6777777664
Q ss_pred -CceEEEee-cCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcc-eeeEeeceeee----------EEEEEE
Q 012064 93 -ERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGV-ETKLLGKHQGR----------AHKLAI 158 (471)
Q Consensus 93 -~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~-~~~~~~~~~~~----------v~~~~~ 158 (471)
|+....-. .....+-..+++++ ++++++++.. .|.|.++-++....+ .......|.+. +....+
T Consensus 75 ~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~ 152 (346)
T COG2706 75 DGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF 152 (346)
T ss_pred CCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence 44321111 11222337889999 9999988765 578999998664332 22234445555 888999
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE-EeCCCeEEEEEcCCC-
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDEYTRLYDIRKY- 236 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~i~d~~~~- 236 (471)
.|+++.+++..-.--.|.+|++..+.....-...- ......+.|.|+|+ +++..+ .--+++|.+|.....
T Consensus 153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-------~~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-------KPGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred CCCCCEEEEeecCCceEEEEEcccCcccccccccc-------CCCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCC
Confidence 99996443333333479999999776543322211 13445688999999 455544 456889999998874
Q ss_pred -ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC--cEEEEecCCCCCCCCCCCCCccccccccccC
Q 012064 237 -KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (471)
Q Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (471)
++... ......+.-+. .......+..+|||++|.++..+ .|.+|.+......
T Consensus 225 g~~~~l------Q~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~------------------ 279 (346)
T COG2706 225 GKFEEL------QTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK------------------ 279 (346)
T ss_pred ceEEEe------eeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE------------------
Confidence 21100 00011111122 24567789999999999998844 6888877542100
Q ss_pred CCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC-CeEEEEEcc--CCeeeEEec-CCCcceE
Q 012064 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKK--GGELIRVIE-ADRHVVN 389 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d-g~v~iwd~~--~~~~~~~~~-~h~~~v~ 389 (471)
.........+.. ..+...+ ++.|++|+++.++ ..|.+|.+. +|++-.... .......
T Consensus 280 ----------------L~~~~~~~teg~--~PR~F~i-~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pv 340 (346)
T COG2706 280 ----------------LELVGITPTEGQ--FPRDFNI-NPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPV 340 (346)
T ss_pred ----------------EEEEEEeccCCc--CCcccee-CCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcE
Confidence 001111111111 1456677 9999999988876 468888664 454433222 2223445
Q ss_pred EEEEc
Q 012064 390 CIEPH 394 (471)
Q Consensus 390 ~~~~s 394 (471)
|+.|.
T Consensus 341 cv~f~ 345 (346)
T COG2706 341 CVKFL 345 (346)
T ss_pred EEEEc
Confidence 55553
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.6e-12 Score=117.82 Aligned_cols=238 Identities=12% Similarity=0.070 Sum_probs=137.6
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcE--EEEEecCC--eEEEEeccCCccceeeeecccCCcCcceeee
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV--FYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (471)
.|.+.|........ +.........-.|+|||+.+ +++...+| .|.+.++.+++..+.... ..
T Consensus 166 ~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-----------~g 231 (428)
T PRK01029 166 ELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-----------QG 231 (428)
T ss_pred eEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-----------CC
Confidence 56666765444322 44445566778999999653 33554443 588888888765443321 11
Q ss_pred eeEEEEEcCCCCceEEEEeCCC----eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee
Q 012064 205 NLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
.....+|+|||..++++...+| .+..|++..+... .+..+...........+|+|||+.|+..+
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG------------KPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC------------cceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 2346799999544444443333 3344666543100 01112212222345679999999888765
Q ss_pred --CCc--EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc
Q 012064 281 --DEF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (471)
Q Consensus 281 --~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~ 356 (471)
++. ++++++.... .....+..+... +....| +|||+
T Consensus 300 ~~~g~~~ly~~~~~~~g-------------------------------------~~~~~lt~~~~~--~~~p~w-SPDG~ 339 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEG-------------------------------------QSPRLLTKKYRN--SSCPAW-SPDGK 339 (428)
T ss_pred CCCCCceEEEEECcccc-------------------------------------cceEEeccCCCC--ccceeE-CCCCC
Confidence 343 5555543210 011222222221 456677 99999
Q ss_pred EEEEeeCC---CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec---CCcEEEecCCCCCCcccCcchheee
Q 012064 357 YVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---ESDIKILTPNAADRATLPTNIEQAM 430 (471)
Q Consensus 357 ~l~~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~ 430 (471)
+|+..+.+ ..|++||+.+++.. .+......+....|+|||+.|+.... ...|++|++.+++...+.....+..
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~ 418 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKR 418 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCccc
Confidence 98866543 47999999888664 34333446778999999997764432 3569999999887766665444433
Q ss_pred hhh
Q 012064 431 MMT 433 (471)
Q Consensus 431 ~~~ 433 (471)
..+
T Consensus 419 ~p~ 421 (428)
T PRK01029 419 FPS 421 (428)
T ss_pred Cce
Confidence 333
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.6e-10 Score=97.57 Aligned_cols=288 Identities=12% Similarity=0.196 Sum_probs=175.9
Q ss_pred CCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEecccc--CcceeeEeeceeeeEE
Q 012064 82 DRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILER--GGVETKLLGKHQGRAH 154 (471)
Q Consensus 82 d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~~~~~~~~v~ 154 (471)
+.-|.+|++.+.. ......-.+.+..+-++|+| +++.|.++..+ |.|.-|.++.. .............+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 3459999987433 21111235677888999999 99999887654 67877777653 3322111122223447
Q ss_pred EEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCc--ceeeeeeEEEEEcCCCCceEEEEe-CCCeEEE
Q 012064 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRN--YMTVVNLNAIAIDPRNANLFAVAG-SDEYTRL 230 (471)
Q Consensus 155 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i 230 (471)
-++++++++.++.+...-|.|.++-++. |................ ......+....+.|+ ++++++.+ .-..|.+
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEE
Confidence 8999999976555556678999999966 33322212111111100 001223778899999 55666544 4457999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCC-CCCCCCCCCccccc
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGL-GPNPPPSSPVSTRS 307 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~-~~~~~~~~~~~~~~ 307 (471)
|++..+++... .+... .....-+.+.|+|++++..... +++|.+|..+... ....++.
T Consensus 172 y~~~dg~L~~~----------~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~------- 232 (346)
T COG2706 172 YDLDDGKLTPA----------DPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT------- 232 (346)
T ss_pred EEcccCccccc----------ccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee-------
Confidence 99997765422 11111 2345678899999999877666 7899999987631 1111000
Q ss_pred cccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEccC--Cee--eEEec
Q 012064 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG--GEL--IRVIE 382 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~~--~~~--~~~~~ 382 (471)
.......|.+... ...+.. ++||++|.+... ...|.+|.+.. +++ +....
T Consensus 233 ---------------------i~tlP~dF~g~~~---~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 233 ---------------------IDTLPEDFTGTNW---AAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred ---------------------eccCccccCCCCc---eeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec
Confidence 0011222333333 456666 999999998754 24788887754 322 22233
Q ss_pred CCCcceEEEEEcCCCCEEEEeecC-CcEEEecCCC
Q 012064 383 ADRHVVNCIEPHPHSTVLASSGIE-SDIKILTPNA 416 (471)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~ 416 (471)
.+......+.++|++++|+.+..+ ..|.+|..+.
T Consensus 288 teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 288 TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 344557899999999998888765 4688887753
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.49 E-value=1.3e-10 Score=101.12 Aligned_cols=224 Identities=15% Similarity=0.112 Sum_probs=149.4
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeE--EeccccccEEEEE-EcC-CCCEEEEecCC
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYA--KLDKHRGCVNTVS-FNT-DGDILISGSDD 82 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~V~~~~-~s~-~g~~l~s~~~d 82 (471)
+.+|++++-. .-|.|.++|.++..+..- .+.+++.+ .......+..-+. |++ +|.+++..|.
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekl------------dI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR- 340 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKL------------DIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR- 340 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceee------------ecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-
Confidence 4577777654 367899999997554410 00001110 0111111222222 333 6888888876
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC-eEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG-QVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|...|.+...+-. .. -+|.+.|.-..+.. +++-++.|..|| .+-++|..+++... ....-+.|.++..+|+
T Consensus 341 GkaFi~~~~~~~~-iq--v~~~~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~e~kr---~e~~lg~I~av~vs~d 412 (668)
T COG4946 341 GKAFIMRPWDGYS-IQ--VGKKGGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGGEVKR---IEKDLGNIEAVKVSPD 412 (668)
T ss_pred CcEEEECCCCCee-EE--cCCCCceEEEEEcc--CCcceEEeccCCceEEEEecCCceEEE---eeCCccceEEEEEcCC
Confidence 6777777554443 23 37888899888888 888999999998 89999987776433 5556688999999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC----eEEEEEcCCCc
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYK 237 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~ 237 (471)
|+ .++++.....|.+.|+.+++....-+. ...-|..+.|+|+ +.++|-+--+| .|++||+..++
T Consensus 413 GK-~~vvaNdr~el~vididngnv~~idkS----------~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 413 GK-KVVVANDRFELWVIDIDNGNVRLIDKS----------EYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred Cc-EEEEEcCceEEEEEEecCCCeeEeccc----------ccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCe
Confidence 94 567777788999999999976543322 4456899999998 78999887666 48999999876
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
.-.. ....+.=.+-+|.|++++|..-+
T Consensus 481 iy~v----------------TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 481 IYDV----------------TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEe----------------cCCcccccCcccCCCCcEEEEEe
Confidence 3211 01112224557889999876544
No 260
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=3e-12 Score=105.03 Aligned_cols=230 Identities=13% Similarity=0.189 Sum_probs=150.4
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eEEEe---ecCCC------------cceeEEEEecCCCCeEEEE
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSF---HSGHN------------DNVFQAKIMPFTDDRSIVT 123 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~------------~~v~~~~~~~~~~~~~l~s 123 (471)
....|+++.|...|.||++|...|.|.+|.-+... +...+ .++|. ..|..+.|........++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999765432 11111 13342 4578888876333456777
Q ss_pred EeCCCeEEEEeccccCcc----------------------------------------eee-EeeceeeeEEEEEEccCC
Q 012064 124 CAADGQVRHAQILERGGV----------------------------------------ETK-LLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~~~~----------------------------------------~~~-~~~~~~~~v~~~~~~~~~ 162 (471)
.+.|.+|++|.+...... +.+ ....|...+.++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999988654110 000 013477788999999887
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
. .+.++.|-.|.+|+++-......+.-.++..... -..-|++..|+|...+.+.-.+..|.|++-|+|...+-...
T Consensus 185 e--t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmee--LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 185 E--TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEE--LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred h--eeeeccceeeeeccccccCCceEEEeccCccHHH--HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 4 3455678889999987654333222222211111 22357888999987788888899999999999965432110
Q ss_pred C-CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCC
Q 012064 243 D-FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (471)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~ 293 (471)
. +............+.+--..|..+.|+++|+++++-.--++++||.+..+
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 0 00000000011122233456889999999999999988899999998754
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=6.9e-11 Score=103.60 Aligned_cols=298 Identities=13% Similarity=0.110 Sum_probs=187.7
Q ss_pred CCCCCCCCcEEEEecCCCe---------------EEEEEcccCccccccccceecccccceeeeeeeEEecccccc--EE
Q 012064 3 DASNNNNNKRARTSVDKAL---------------VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC--VN 65 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~---------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~ 65 (471)
...|+|++++|++=++.+. +.+||..+|..+ ..+.+-..+ .+
T Consensus 76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv---------------------~sf~~~~q~~~~W 134 (561)
T COG5354 76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV---------------------FSFNGISQPYLGW 134 (561)
T ss_pred ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE---------------------eeccccCCccccc
Confidence 4678999999999776665 899999988877 344444333 44
Q ss_pred -EEEEcCCCCEEEEecCCCeEEEEECCCCceE-EEeecCCCcceeEEEEecCCCCeEEEE-----EeCCCeEEEEecccc
Q 012064 66 -TVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVT-----CAADGQVRHAQILER 138 (471)
Q Consensus 66 -~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~ 138 (471)
-+.|+-+.+++|--.. ..+.|+++ ++... ..+..-....|....|+|..++..|+. .+..+++++|.+..+
T Consensus 135 p~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 135 PVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred ceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence 6788888888775533 46999997 43321 111111235688889999434444553 356789999999866
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEe----------cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG----------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
..+..+.+.. -.=..+.|.+.|..+++-.- .+..+++++++...+..... ...+|..
T Consensus 213 s~l~tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~-----------~~~pVhd 279 (561)
T COG5354 213 SVLVTKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD-----------LKDPVHD 279 (561)
T ss_pred CeeeeeeeEe--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc-----------cccccee
Confidence 6655544432 22245788888865544321 12467888877443332211 3457999
Q ss_pred EEEcCCCCceEEE--EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee----CC
Q 012064 209 IAIDPRNANLFAV--AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DE 282 (471)
Q Consensus 209 ~~~~p~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~ 282 (471)
++|.|.+ ..+++ |...-.+.++|++..- . .......=..+.|+|.+++++.++ .+
T Consensus 280 f~W~p~S-~~F~vi~g~~pa~~s~~~lr~Nl-~-----------------~~~Pe~~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 280 FTWEPLS-SRFAVISGYMPASVSVFDLRGNL-R-----------------FYFPEQKRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred eeecccC-CceeEEecccccceeecccccce-E-----------------EecCCcccccccccCcccEEEEecCCcccc
Confidence 9999984 44443 3577889999998752 1 001122335577999999988866 34
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
.+.+||.... ......+.+.. ..-+.| +|||+++.+..
T Consensus 341 ni~i~~~~~r-------------------------------------f~~~~~~~~~n----~s~~~w-spd~qF~~~~~ 378 (561)
T COG5354 341 NIEIFDPAGR-------------------------------------FKVAGAFNGLN----TSYCDW-SPDGQFYDTDT 378 (561)
T ss_pred ceEEeccCCc-------------------------------------eEEEEEeecCC----ceEeec-cCCceEEEecC
Confidence 6999998653 22222344332 334456 99999988763
Q ss_pred ------CCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec
Q 012064 363 ------DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (471)
Q Consensus 363 ------~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (471)
.|..|.|||+...+ +. ..+.+.|.|.+++.-+.+.
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDPSGQYVTTSSS 419 (561)
T ss_pred CCcccccCcceEEEEecCch-hh-------hhhhccccCCcccceeecc
Confidence 37889999985432 22 3455666666665544443
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.8e-11 Score=110.46 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=139.9
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeE--E-EEEeCCC--eEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS--I-VTCAADG--QVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
+.|.+.|.+.++. ..+ ..........+|+| ||+. + ++...+| .|.+.++..++... +....+.....+
T Consensus 165 ~~l~~~d~dG~~~-~~l-t~~~~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~---lt~~~g~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNL-RPL-TQEHSLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK---ILALQGNQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCc-eEc-ccCCCCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceE---eecCCCCccceE
Confidence 4677788765544 444 34455677889999 9875 2 2444444 57777877665443 333444556789
Q ss_pred EccCCCcEEEEEecCC----eEEEEeccCCc--cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEE
Q 012064 158 IEPGSPHVFYTCGEDG----LVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (471)
|+|||++++++...+| .+..|++..+. ....+... ........+|+||+..++++...+|...+|
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~---------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE---------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC---------CCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 9999976666554433 34446766532 11111110 111235679999954344444456655555
Q ss_pred E--cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--C--cEEEEecCCCCCCCCCCCCCccc
Q 012064 232 D--IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVST 305 (471)
Q Consensus 232 d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~~~ 305 (471)
. +..... . ..........+....|+|||+.|+..+. + .|++||+.++..
T Consensus 309 ~~~~~~~g~-------------~-~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------- 363 (428)
T PRK01029 309 IMQIDPEGQ-------------S-PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------- 363 (428)
T ss_pred EEECccccc-------------c-eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-----------
Confidence 4 332110 0 1111222345667899999998887652 2 599999877521
Q ss_pred cccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC---CCeEEEEEccCCeeeEEec
Q 012064 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~---dg~v~iwd~~~~~~~~~~~ 382 (471)
..+..... .+....| +|||++|+.... ...|+++|+.+++.....
T Consensus 364 ----------------------------~~Lt~~~~--~~~~p~w-SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt- 411 (428)
T PRK01029 364 ----------------------------YQLTTSPE--NKESPSW-AIDSLHLVYSAGNSNESELYLISLITKKTRKIV- 411 (428)
T ss_pred ----------------------------EEccCCCC--CccceEE-CCCCCEEEEEECCCCCceEEEEECCCCCEEEee-
Confidence 11111111 1445677 999998875432 357899999777654433
Q ss_pred CCCcceEEEEEcCCC
Q 012064 383 ADRHVVNCIEPHPHS 397 (471)
Q Consensus 383 ~h~~~v~~~~~s~~~ 397 (471)
...+.+...+|+|-.
T Consensus 412 ~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGSGEKRFPSWGAFP 426 (428)
T ss_pred cCCCcccCceecCCC
Confidence 344567788888753
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1.1e-10 Score=107.69 Aligned_cols=307 Identities=14% Similarity=0.094 Sum_probs=177.5
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
.+.++++++.+|.+..+|.++|+.+- +.+-......... .++..++.++.++.+..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W---------------------~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~al 120 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLW---------------------RVDLDERLSGGVG--ADGGLVFVGTEKGEVIAL 120 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEee---------------------eecCCCCcccceE--EcCCEEEEEcCCCEEEEE
Confidence 35678888889999999999898762 1111111111122 246678888899999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeE---EEEEEccCCCcE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA---HKLAIEPGSPHV 165 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~ 165 (471)
|..+|+.+.+... .+.+.+.-.. .+..++.+..+|.+..||..+++.+-........... ...... ++ .
T Consensus 121 d~~tG~~~W~~~~--~~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~ 192 (377)
T TIGR03300 121 DAEDGKELWRAKL--SSEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--G 192 (377)
T ss_pred ECCCCcEeeeecc--CceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--E
Confidence 9999998777632 2233221111 3456777778999999999888765432111110000 011111 23 4
Q ss_pred EEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee-EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCC
Q 012064 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (471)
++.+..++.+..+|+++++.....................+ ....+. +..++.++.+|.++.||.++++.......
T Consensus 193 v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 193 VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 67788889999999999987654432111000000000000 011121 24677788899999999988764322110
Q ss_pred CCCCCcCCCCcccCCCccceEEEEEcCCCCeEE-EeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLV-SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
. ...... ..+..++ ...++.++.+|..+++......
T Consensus 270 -------------~----~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~------------------------ 306 (377)
T TIGR03300 270 -------------S----SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKND------------------------ 306 (377)
T ss_pred -------------C----CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccc------------------------
Confidence 0 011111 1233444 4447789999998764322210
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcce-EEEEEcCCCCEEEE
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV-NCIEPHPHSTVLAS 402 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~s 402 (471)
.+.+.. ..+.. ..+..+++++.+|.|+++|..+|+.+..++.+...+ ....+. + +.|+.
T Consensus 307 -----------~~~~~~----~ssp~---i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v 366 (377)
T TIGR03300 307 -----------ELKYRQ----LTAPA---VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLV 366 (377)
T ss_pred -----------cccCCc----cccCE---EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEE
Confidence 011100 11111 135688899999999999999999998887666433 222332 3 35778
Q ss_pred eecCCcEEEe
Q 012064 403 SGIESDIKIL 412 (471)
Q Consensus 403 ~~~dg~i~iw 412 (471)
++.||.|+.+
T Consensus 367 ~~~dG~l~~~ 376 (377)
T TIGR03300 367 QTRDGDLYAF 376 (377)
T ss_pred EeCCceEEEe
Confidence 8889999876
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.8e-11 Score=107.26 Aligned_cols=252 Identities=10% Similarity=0.086 Sum_probs=158.9
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEE-----EeCCCeEEEEeccccC
Q 012064 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-----CAADGQVRHAQILERG 139 (471)
Q Consensus 65 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~ 139 (471)
++..|++|..+.|-- ..+.+.+|+..+.+.+.. .-|...|..+.++|.+....+++ .+.-..+++|......
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 689999988654432 235799999887554333 34678899999999322334443 3445689999886322
Q ss_pred cce---eeEeeceeeeEEEEEEccCCCcEEEEEec-----------CCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 140 GVE---TKLLGKHQGRAHKLAIEPGSPHVFYTCGE-----------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 140 ~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.-. .+.+. ...=..+.|++-+.-+|+..+. +..+++.+++.......+. ..++
T Consensus 206 ~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-----------k~GP 272 (566)
T KOG2315|consen 206 QHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-----------KEGP 272 (566)
T ss_pred ccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-----------CCCC
Confidence 211 11111 1222347788877666655543 2468888877443333332 4568
Q ss_pred eEEEEEcCCCCceEE-EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee----
Q 012064 206 LNAIAIDPRNANLFA-VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---- 280 (471)
Q Consensus 206 v~~~~~~p~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---- 280 (471)
|.++.|+|++..+.+ -|-.-..+.+||++..-. ..-..++-+.+-|+|.|++++.++
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v------------------~df~egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV------------------FDFPEGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCCCCEe------------------EeCCCCCccceEECCCCCEEEEeecCCC
Confidence 999999999533333 345667899999986431 122245667899999999988776
Q ss_pred CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 281 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
.|.+.+||+.+.+ .+..+.... .+-+.| +|||+++++
T Consensus 335 ~G~mEvwDv~n~K--------------------------------------~i~~~~a~~----tt~~eW-~PdGe~flT 371 (566)
T KOG2315|consen 335 PGDMEVWDVPNRK--------------------------------------LIAKFKAAN----TTVFEW-SPDGEYFLT 371 (566)
T ss_pred CCceEEEeccchh--------------------------------------hccccccCC----ceEEEE-cCCCcEEEE
Confidence 4579999998743 233333222 334556 999999998
Q ss_pred eeC------CCeEEEEEccCCeeeEEecCCCcceEEEEEcC
Q 012064 361 GSD------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (471)
Q Consensus 361 g~~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (471)
++. |+.++||+. +|..+..-.-.+ ....+.|-|
T Consensus 372 ATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 372 ATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred EeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeee
Confidence 864 678999998 566554332211 456666654
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.8e-11 Score=110.32 Aligned_cols=288 Identities=11% Similarity=0.112 Sum_probs=191.1
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--------------EEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--------------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
......|++|+....++|.||.||.+++-.+.+... ..+.+.+|.+.|.-+.|+. +.+.|-++.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NNQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--ccccccccC
Confidence 456688999999999999999999999998765321 1122478999999999998 888999999
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccce-eeeecccCCcCcceeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~ 204 (471)
.+|-|.+|-+-.+.......-....+.|.+++|+.+|. .+.....||.|.+=.++..+.-. .++ ..
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLk------------g~ 157 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELK------------GQ 157 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcc------------hh
Confidence 99999999998887766554556677899999999995 57888889888877666543211 111 11
Q ss_pred eeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCc---ccCCCccceEEEEEc--------CCC
Q 012064 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN---LIGDEQVGITGLAFS--------DQS 273 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~--------~~~ 273 (471)
....+.|++| ...++.+-.+|.+.+||....=. ..+ ...|... ........|..+.|. |+-
T Consensus 158 ~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~-~Kl------~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 158 LLAHVLWSED-LEQALFKKANGETHLYDNQGNFE-RKL------EKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred eccceeeccc-HHHHHhhhcCCcEEEecccccHH-Hhh------hhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 3457889999 56677778889999999764310 000 0001000 011111224444443 344
Q ss_pred CeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeC
Q 012064 274 ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (471)
Q Consensus 274 ~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 352 (471)
..|+.+. .|.+.+..-.+.. .+...-.+ ..+....| +
T Consensus 230 P~lavcy~nGr~QiMR~eND~-------------------------------------~Pvv~dtg----m~~vgakW-n 267 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDP-------------------------------------EPVVVDTG----MKIVGAKW-N 267 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCC-------------------------------------CCeEEecc----cEeeccee-c
Confidence 4555554 5556555443321 11111112 23778888 9
Q ss_pred CCCcEEEEeeCC---------CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 353 PKCEYVVSGSDC---------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 353 ~~g~~l~~g~~d---------g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
++|..||.++.+ +.|.+|.. -|+.+..++.....|++++|-..|-.+|.+ .|+.|++=++
T Consensus 268 h~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 268 HNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred CCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEee
Confidence 999999988654 35677764 577888888888899999997776555544 2445544333
No 266
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=2.1e-12 Score=117.79 Aligned_cols=292 Identities=14% Similarity=0.167 Sum_probs=188.7
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
.+++..+.++|.|+-+|.++.-| +.+-|+... .+.+-+..-..-.|-...|+|.+...+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 56788899999999999999887 555676543 3333332222335778889986555555555555566789886443
Q ss_pred c-ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 140 G-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 140 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
. .....+.+|...|+++-|+|+.+.++++++.|-.+..||+++.......... -......++|+..+++.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~---------w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS---------WRSAASQVKWNYKDPNV 173 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec---------ccccCceeeecccCcch
Confidence 2 2234577899999999999999999999999999999999987543222111 11245678898876766
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC--CCCeEEEeeCCcEEEEecCCCCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYNDEFIYLFTQDMGLGPN 296 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~i~i~d~~~~~~~~ 296 (471)
+++ +....|++||++.+. .+.....+|-..|..+.|+. .+..+-+..+++++.||........
T Consensus 174 las-shg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 174 LAS-SHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred hhh-ccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 664 566779999999875 23334445677788888875 2344455558899999987642211
Q ss_pred CCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc--EEEEeeCCCeEEE-----
Q 012064 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFI----- 369 (471)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~--~l~~g~~dg~v~i----- 369 (471)
. +.. .... .+..-.| -|-|. ++.---.+..+.+
T Consensus 239 ~------------------------------------~~v-tt~~--piw~~r~-~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 239 K------------------------------------RTV-TTNF--PIWRGRY-LPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred c------------------------------------eec-cccC--cceeccc-cccCceeEeccccCCeeeeeccccc
Confidence 1 000 0011 1333333 33322 2221111223333
Q ss_pred ----EEccC-CeeeEEecCCCcceEEEEEcCCC--------C--EEEEeecCCcEEEecCCCC
Q 012064 370 ----WKKKG-GELIRVIEADRHVVNCIEPHPHS--------T--VLASSGIESDIKILTPNAA 417 (471)
Q Consensus 370 ----wd~~~-~~~~~~~~~h~~~v~~~~~s~~~--------~--~l~s~~~dg~i~iw~~~~~ 417 (471)
|+..+ .+++.++.||.+.|...-|-..+ + .|+|-+.|..+++|-+...
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 33333 36788999999998877774322 2 7999999999999999754
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=3e-11 Score=98.45 Aligned_cols=206 Identities=13% Similarity=0.037 Sum_probs=143.8
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceEE-EeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce
Q 012064 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (471)
Q Consensus 64 V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 142 (471)
-.++.|++.+..++++..+|.+.+-+........ +..++|.-+.+-..|+.. +.+.+.+|++|+.+..||++..+...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCccee
Confidence 4578899999999999999999865544443322 234889999999999874 56789999999999999998544332
Q ss_pred eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
-.....|...|.+|.-+|..+..+++|+.|-.|++||.|+ ++++..-. ..+.|..+.++|.....++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-----------v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-----------VGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-----------cccceEEEEecchhhhHHHH
Confidence 2334568889999999998888999999999999999985 34433322 34579999999974444444
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEE-EEecCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIY-LFTQDM 291 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~-i~d~~~ 291 (471)
++.-...++-+....... ..........|.+-...-.|.....+|++++ +..++ +|-.-+
T Consensus 272 ~CMh~G~ki~~~~~~~~e----------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLE----------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred HHHhcCceEEEecccccc----------hheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 454555778777665422 0111233445555566666655556788876 55544 775444
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.40 E-value=2.9e-09 Score=92.86 Aligned_cols=204 Identities=14% Similarity=0.143 Sum_probs=134.2
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCc-ceeeeeeEEEE-EcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN-YMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
.+.||+++++. ..|.|.+||.++....+.--..+...... .....+..-+. |++.+|.+++..+. |...+.+...
T Consensus 274 ~nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 35577655543 45679999998876543321112211100 00111111121 45555778887765 5666665544
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC-cEEEEecCCCCCCCCCCCCCccccccccccC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (471)
+- .+.-++...|....+.-+++-++.+. ++ .+-+||.++++
T Consensus 351 ~~-----------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------------------- 393 (668)
T COG4946 351 GY-----------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------------------- 393 (668)
T ss_pred Ce-----------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--------------------
Confidence 32 12234456688878877776666665 44 79999998752
Q ss_pred CCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEE
Q 012064 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (471)
...+.+.-+. |.++.. +++|++++.+.....+.+.|+.+|+....-+...+-|+.++|
T Consensus 394 -------------------~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~ 451 (668)
T COG4946 394 -------------------VKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW 451 (668)
T ss_pred -------------------EEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence 2334444443 888998 999999999999999999999999876655666788999999
Q ss_pred cCCCCEEEEeecC----CcEEEecCCCCCCcccC
Q 012064 394 HPHSTVLASSGIE----SDIKILTPNAADRATLP 423 (471)
Q Consensus 394 s~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~ 423 (471)
||+++++|-+--+ ..|+++|..+++.-..+
T Consensus 452 ~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 452 HPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred cCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 9999999977554 46999999987764443
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=1.5e-11 Score=102.30 Aligned_cols=276 Identities=15% Similarity=0.199 Sum_probs=183.3
Q ss_pred ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEe
Q 012064 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (471)
Q Consensus 100 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 179 (471)
..||...+++...-| ...-+++.+.|.++|+|--++....-.........+++++.+.++. ..|+.+-..|++.-+.
T Consensus 20 ~eG~~d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFA 96 (404)
T ss_pred hcCchhhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEE
Confidence 378889999988888 7888999999999999965444332222233355778999999988 5788898999998886
Q ss_pred ccCC----ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCc
Q 012064 180 LRTG----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (471)
Q Consensus 180 ~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (471)
+... ...+.+.. |...+..+-|+.. ..++++.+.|..+.---.+.+...+.+.+..+
T Consensus 97 ~sedfnkm~~~r~~~~----------h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-------- 157 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLA----------HQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-------- 157 (404)
T ss_pred hhhhhhhcchhhhhhh----------hhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeecc--------
Confidence 6432 22222221 6668888989877 67899999888776655665554433222110
Q ss_pred ccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCe
Q 012064 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (471)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (471)
-+.+.+.-. +...|. .+.+....+... ....+.
T Consensus 158 --------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~------------------------------------~~~~i~ 191 (404)
T KOG1409|consen 158 --------ASALQFDAL--YAFVGDHSGQITMLKLEQN------------------------------------GCQLIT 191 (404)
T ss_pred --------CCCCceeeE--EEEecccccceEEEEEeec------------------------------------CCceEE
Confidence 000000000 111121 233333332211 134567
Q ss_pred eeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee-EEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 335 ~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
.+.+|... +.++.| .+..+.|++|.+|..+.+||+...+-+ .++.+|...|..+..-+.-+.|.+++.||.|.+|+
T Consensus 192 ~~~~h~~~--~~~l~W-d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 192 TFNGHTGE--VTCLKW-DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred EEcCcccc--eEEEEE-cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 88889887 899998 999999999999999999999655433 57789999999998888888999999999999999
Q ss_pred CCCCCCccc---Cc-chheeehhhHHHHHHHHHHHHH
Q 012064 414 PNAADRATL---PT-NIEQAMMMTMTMMILMMTTMMM 446 (471)
Q Consensus 414 ~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 446 (471)
.+....... .. .-+..-.+.|-.+..|+.+..+
T Consensus 269 mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~ 305 (404)
T KOG1409|consen 269 MNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQL 305 (404)
T ss_pred ccceeecCccccccchhhhhCchHHHHHHHHHhhhhh
Confidence 986543221 11 1222334444455555555443
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6.8e-11 Score=107.88 Aligned_cols=247 Identities=14% Similarity=0.101 Sum_probs=164.4
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..++++.+..++|.|+.||.+++-.+.+...-. ...+ ......+..-+++.||.+.|.-+.|+...+.|-|...
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-~~~g-----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-NKSG-----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcc-cccc-----cccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 456788899999999999999999988533211 1111 1122344555889999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 82 DRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
+|.|.+|-+-.|.-.... ....++-|.+++|.. ||..+.....||.|.+=.++.+.. .-+.+.+ .....+.|++
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNRI-WGKELKG--QLLAHVLWSE 166 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeecccee-cchhcch--heccceeecc
Confidence 999999998777532222 133566789999999 999999999999887665543322 1111221 1234678999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCcccee-----eeecccCCcCcceeeeeeEEEEEc--------CCCCceEEEEeCCCe
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATEL-----FTCRPIDDRRNYMTVVNLNAIAID--------PRNANLFAVAGSDEY 227 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~--------p~~~~~l~~~~~dg~ 227 (471)
|. .+++.+-.+|.+.++|.+..-..+. ......... .+..+..+.|. |+ .-.|+++..+|.
T Consensus 167 D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~----~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr 240 (1189)
T KOG2041|consen 167 DL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN----FPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGR 240 (1189)
T ss_pred cH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC----CCccccceeeccCccccCCCC-CCEEEEEEcCce
Confidence 98 4667777889999999765322111 110000000 11234455553 45 567888999998
Q ss_pred EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC
Q 012064 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (471)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (471)
+.+-.-.+.. .|. .-...-.+..+.|+++|..|+.++.
T Consensus 241 ~QiMR~eND~--------------~Pv--v~dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 241 MQIMRSENDP--------------EPV--VVDTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred ehhhhhcCCC--------------CCe--EEecccEeecceecCCCcEEEEccC
Confidence 8876554432 111 1112356889999999999998773
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=2.1e-11 Score=108.85 Aligned_cols=210 Identities=15% Similarity=0.158 Sum_probs=150.7
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccc-eeeeeeeEEeccccccEEEEEE----cCCCCEEEEec
Q 012064 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDL-VLRLGIYAKLDKHRGCVNTVSF----NTDGDILISGS 80 (471)
Q Consensus 6 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~----s~~g~~l~s~~ 80 (471)
++|-..++|....||.+|+|+..++++.. .|.|.+..+.-. ...+.+..... .-...++.+ +-|-..++-|.
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~-e~~p~~~~s~t~~~~~w~L~~~~s--~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQ-EFAPIASLSGTCTYTKWGLSADYS--PMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeee-eeccchhccCcceeEEEEEEeccc--hHHHHhHHHHhhccCCceEEEeec
Confidence 35667889999999999999999877653 343333332221 11111110000 001111111 11335677888
Q ss_pred CCCeEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 81 DDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
..|.|.+|++..|+....+. ..|.+.|.++.++. +-..|.+++.|+.+..|+..+...+.. +......+.+++++
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~--~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRI--WKEQKPLVSSLCIS 153 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeee--eccCCCccceEEEc
Confidence 89999999999999877775 57999999999998 889999999999999999877766554 67777889999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC-----CCceEEEEeCCCeEEEEEcC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR-----NANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~i~i~d~~ 234 (471)
||+ ..+++++ +.|++||+++++.+..+.. |.++|+++.|--. |..+|.+...+..+.+|-..
T Consensus 154 ~D~-~~l~~as--~~ik~~~~~~kevv~~ftg----------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 154 PDG-KILLTAS--RQIKVLDIETKEVVITFTG----------HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCC-CEEEecc--ceEEEEEccCceEEEEecC----------CCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 998 4667665 5799999999999998875 6678899888765 33445555566668888776
Q ss_pred C
Q 012064 235 K 235 (471)
Q Consensus 235 ~ 235 (471)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.3e-09 Score=100.31 Aligned_cols=206 Identities=14% Similarity=0.125 Sum_probs=126.3
Q ss_pred eEEEEEEccCCCcEEEE-Eec--CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC--C
Q 012064 152 RAHKLAIEPGSPHVFYT-CGE--DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--E 226 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g 226 (471)
......|+|+++++++. ... +..|+++|+.+++...... .........|+||+..++++.+.+ .
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-----------~~g~~~~~~~SPDG~~la~~~~~~g~~ 257 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-----------SQGMLVVSDVSKDGSKLLLTMAPKGQP 257 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------CCCcEEeeEECCCCCEEEEEEccCCCc
Confidence 67789999999653443 332 3569999998887655433 112345677999965555555444 4
Q ss_pred eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC----cEEEEecCCCCCCCCCCCCC
Q 012064 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~ 302 (471)
.|+++|+..++... +..+........|+|||+.|+..++. .|+++|+.++....
T Consensus 258 ~Iy~~dl~~g~~~~----------------LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r------ 315 (419)
T PRK04043 258 DIYLYDTNTKTLTQ----------------ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ------ 315 (419)
T ss_pred EEEEEECCCCcEEE----------------cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe------
Confidence 67888887654211 11112122345799999988777633 58888887642211
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC---------CeEEEEEcc
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---------GRIFIWKKK 373 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d---------g~v~iwd~~ 373 (471)
..+.+.. ...| +|||++|+..... ..|++.|+.
T Consensus 316 -------------------------------lt~~g~~------~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 316 -------------------------------VVFHGKN------NSSV-STYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred -------------------------------CccCCCc------CceE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 0111111 1256 9999988865533 378888988
Q ss_pred CCeeeEEecCCCcceEEEEEcCCCCEEEEeecC---CcEEEecCCCCCCcccCcchheee
Q 012064 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQAM 430 (471)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~ 430 (471)
+++. ..+... +......|+|||+.++..+.+ ..+.+.+++......++....++.
T Consensus 358 ~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~ 415 (419)
T PRK04043 358 SDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQ 415 (419)
T ss_pred CCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccC
Confidence 7764 344433 234468999999977665533 247788888766666655444443
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.34 E-value=6.8e-09 Score=104.07 Aligned_cols=336 Identities=13% Similarity=0.044 Sum_probs=198.1
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecc-----------cccc-----------------eeeeee
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRA-----------SEDL-----------------VLRLGI 53 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----------~~~~-----------------~~~~~~ 53 (471)
..+++|||+..|+....++++.+-..+ -+.+.+........ ..+. ...-..
T Consensus 124 ~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 124 LAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred EEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence 457899999999999999998887643 22222211100000 0000 000000
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEecC------CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC-
Q 012064 54 YAKLDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA- 126 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~- 126 (471)
...+. +.+.-..++|-.||.++|+.+. -+.++||+-+ |...... ..-.+--.+++|.| .|+++++...
T Consensus 203 ~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrP--sG~lIA~~q~~ 277 (928)
T PF04762_consen 203 EGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRP--SGNLIASSQRL 277 (928)
T ss_pred cCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCC--CCCEEEEEEEc
Confidence 11233 4556678999999999998764 2589999965 6643332 33444456789999 9999998765
Q ss_pred --CCeEEEEeccccCcceeeEee--ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCccee
Q 012064 127 --DGQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 127 --dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
...|.+|.-+.-+. ....+. .....|..+.|++++ .+|+....|. |.+|-..+-..-......-. .
T Consensus 278 ~~~~~VvFfErNGLrh-geF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-------~ 347 (928)
T PF04762_consen 278 PDRHDVVFFERNGLRH-GEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-------S 347 (928)
T ss_pred CCCcEEEEEecCCcEe-eeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-------C
Confidence 34566665322111 111122 345678999999999 5777766554 99998877654322221100 1
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEeeC
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYND 281 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 281 (471)
...+..+.|+|..+..|...+.+|.+..+++.-.-. .+-...|+.. .++....
T Consensus 348 ~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~--------------------------~s~~~~~~D~g~vaVIDG 401 (928)
T PF04762_consen 348 SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS--------------------------RSPGSSPNDNGTVAVIDG 401 (928)
T ss_pred CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE--------------------------ecCCCCccCceEEEEEeC
Confidence 223455999998888898888888887777642110 0001122222 3333344
Q ss_pred CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe
Q 012064 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (471)
Q Consensus 282 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g 361 (471)
.++.+-.++....+.+ .....+.-. ..|.+++| ++++..+++-
T Consensus 402 ~~lllTpf~~a~VPPP---------------------------------Ms~~~l~~~---~~v~~vaf-~~~~~~~avl 444 (928)
T PF04762_consen 402 NKLLLTPFRRAVVPPP---------------------------------MSSYELELP---SPVNDVAF-SPSNSRFAVL 444 (928)
T ss_pred CeEEEecccccCCCch---------------------------------HhceEEcCC---CCcEEEEE-eCCCCeEEEE
Confidence 4677777665432222 111222222 23889998 8888888999
Q ss_pred eCCCeEEEEEccCCeee--------EEec----------CCCcceEEEEEcCCCCEEEEeecC---CcEEEecCCC
Q 012064 362 SDCGRIFIWKKKGGELI--------RVIE----------ADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNA 416 (471)
Q Consensus 362 ~~dg~v~iwd~~~~~~~--------~~~~----------~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~ 416 (471)
..||.|.+|........ ..+. .....+..++|..+..+++..+.+ ..+.+++...
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 99999999985432111 1111 123457888998887766665554 6788887743
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=122.84 Aligned_cols=189 Identities=17% Similarity=0.235 Sum_probs=148.0
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCe
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~ 84 (471)
.-+|...+-++|+.||.+++|....++.+. ..++ .|. ..|+.+.|+.+|+.+..+..||.
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~------------------~~rt-~g~-s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGHGQQVV------------------CFRT-AGN-SRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEeccCCCeEE------------------Eeec-cCc-chhhhhhhcccCCceeeeccCCc
Confidence 356777889999999999999999777652 1122 233 88999999999999999999999
Q ss_pred EEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe---CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
+.+|... .++.... +.|.....+++|.. ..+++++ .++.+.+||..-....... -..|.+.++++++-|.
T Consensus 2275 l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPK 2347 (2439)
T ss_pred eeecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCc
Confidence 9999976 3443333 67888899999863 5666654 4689999997544333222 3789999999999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
. .+|++|+.+|.+++||++..+....++. ++ . ..+|++|+..|.++||++....+...
T Consensus 2348 ~-qllisggr~G~v~l~D~rqrql~h~~~~-------------------~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2348 H-QLLISGGRKGEVCLFDIRQRQLRHTFQA-------------------LD-T-REYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred c-eEEEecCCcCcEEEeehHHHHHHHHhhh-------------------hh-h-hheeeccCcccceEEEEccccchhhc
Confidence 8 6899999999999999999887765541 33 2 56899999999999999998766554
Q ss_pred C
Q 012064 242 T 242 (471)
Q Consensus 242 ~ 242 (471)
.
T Consensus 2406 ~ 2406 (2439)
T KOG1064|consen 2406 F 2406 (2439)
T ss_pred C
Confidence 3
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.32 E-value=1.2e-08 Score=102.35 Aligned_cols=203 Identities=14% Similarity=0.206 Sum_probs=133.6
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEE----ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEec
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILW----DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 135 (471)
..+.|.++.+-++...++.+..+|.|.+. +..+... ..-..-...|.+++||| |+..|+....++++.+..-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEec
Confidence 35789999999999989999999999999 5444332 22234567899999999 9999999998888776532
Q ss_pred c----c---------c--Ccc-------ee------------------------eEeeceeeeEEEEEEccCCCcEEEEE
Q 012064 136 L----E---------R--GGV-------ET------------------------KLLGKHQGRAHKLAIEPGSPHVFYTC 169 (471)
Q Consensus 136 ~----~---------~--~~~-------~~------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~ 169 (471)
. . + +.+ .+ ..+. ..+.-..++|-.||. +|++.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVs 227 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE-YFAVS 227 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc-EEEEE
Confidence 1 0 0 000 00 0011 223446788999995 56665
Q ss_pred ec------CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCccCC
Q 012064 170 GE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---DEYTRLYDIRKYKWDG 240 (471)
Q Consensus 170 ~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 240 (471)
+. -..+++|+-+ |.....-. +. .+--.+++|-|. |+++|+.-. ...|.+|.-+..+..
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE--~v--------~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfErNGLrhg- 294 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSE--PV--------DGLEGALSWRPS-GNLIASSQRLPDRHDVVFFERNGLRHG- 294 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccc--cC--------CCccCCccCCCC-CCEEEEEEEcCCCcEEEEEecCCcEee-
Confidence 53 2579999865 44332222 11 112357899998 688887754 345777775543311
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
.+.+ . .......|..+.|++|+..||..-.+.|.+|-..+.
T Consensus 295 eF~l---------~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY 335 (928)
T PF04762_consen 295 EFTL---------R--FDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY 335 (928)
T ss_pred eEec---------C--CCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCC
Confidence 1111 1 123456789999999999999988888999988764
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.8e-09 Score=99.79 Aligned_cols=371 Identities=13% Similarity=0.093 Sum_probs=207.3
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC---CC-CEEEEecCCCe
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT---DG-DILISGSDDRR 84 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~---~g-~~l~s~~~d~~ 84 (471)
...+||++...|.|.+||...+... ..++.|.+++..++|-| +. ..|+.-....+
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~~---------------------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~ 136 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASVI---------------------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST 136 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhhh---------------------hhhcCCCcchhheeeeeccCcchheeEEecCCcE
Confidence 4556888888999999999977766 57888999999999966 33 45666566679
Q ss_pred EEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc----eeeE-eeceee--------
Q 012064 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV----ETKL-LGKHQG-------- 151 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~-~~~~~~-------- 151 (471)
+.+|+..+|+..... ........|+.+.|+ |.+.+...+..|.+.+-+.-..... .... -..|.+
T Consensus 137 lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWKY-DYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET 214 (1062)
T ss_pred EEEEEccCCceeecc-ccCCcceeeeeeCCC-CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence 999999999998887 344456778999997 6666666666676666654221110 0000 111111
Q ss_pred --------e---------EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 152 --------R---------AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 152 --------~---------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
. ...++|+|.-++. +-......+.++|++-...+...... .+.+.-+.+-|+
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~-lfi~~prellv~dle~~~~l~vvpie----------r~~akfv~vlP~ 283 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNI-LFITFPRELLVFDLEYECCLAVVPIE----------RGGAKFVDVLPD 283 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhce-EEEEeccceEEEcchhhceeEEEEec----------cCCcceeEeccC
Confidence 0 1124678876544 44456678999999988777666542 223445566665
Q ss_pred C-CceEEEEeCCCeEEEEEcCCCccCCCC-------CCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeE-EEeeCCcE
Q 012064 215 N-ANLFAVAGSDEYTRLYDIRKYKWDGST-------DFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELL-VSYNDEFI 284 (471)
Q Consensus 215 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l-~~~~~~~i 284 (471)
. ...|++...||.+.+|-.+........ +++....-.++. ....+......|.. ..+ +..+++..
T Consensus 284 ~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m-----~~~rp~~~~~cPs~~sa~avl~s~g~~ 358 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM-----EEFRPVIGASCPSTPSALAVLYSSGDS 358 (1062)
T ss_pred CCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeec-----hhcccceeecCCCChhhhhhhhhcchh
Confidence 2 356888999999999987653211110 001111000110 01111222223332 222 23356778
Q ss_pred EEEecCCCCCCCCCCCCC-ccccccccc---cCCCCCCccCCCCCCc-ccccCCeeeecCCceeEeeeeeeeCCCCc---
Q 012064 285 YLFTQDMGLGPNPPPSSP-VSTRSEASE---MGSDHTSAASPSTANT-DVRIAPQVYKGHRNCVTVKGVNFFGPKCE--- 356 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~s~~g~--- 356 (471)
.+|.+.+++......... +-..+..+. +.-....+...+.++. ..+........... ..-.. ..|.|+
T Consensus 359 ~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~---~t~~~-~~p~~n~~~ 434 (1062)
T KOG1912|consen 359 TFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPE---LTKVE-NDPGGNTPA 434 (1062)
T ss_pred HHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcc---cceee-cCCCCCccc
Confidence 889988765433222100 000000000 0000011111111110 00000011110000 00011 133332
Q ss_pred ----EEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEE---------eecCCcEEEecCCCCCCccc
Q 012064 357 ----YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLAS---------SGIESDIKILTPNAADRATL 422 (471)
Q Consensus 357 ----~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s---------~~~dg~i~iw~~~~~~~~~~ 422 (471)
++|.|...|+|.++|+.++..-+.+..|++.|.++.|-....++-. ++.-+.+.+-++++|....+
T Consensus 435 ~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 435 GTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred eeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccccc
Confidence 6788999999999999999888899999999999999765544322 22234677888888755433
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=3.2e-09 Score=97.88 Aligned_cols=279 Identities=10% Similarity=-0.003 Sum_probs=161.4
Q ss_pred CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee
Q 012064 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 72 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
.+..++.++.++.+..+|..+|+.+.+.. ........+. . ++..++.++.+|.+..+|..+++..-...+. .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~--v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVG--A--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---S 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceE--E--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---c
Confidence 35678888889999999999999887762 2221111222 2 6677888888999999999888765442222 2
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (471)
.+.+.-...++ .++.++.++.++.||.++++.+........... ... ..+.... + ..++.+..+|.+..+
T Consensus 136 ~~~~~p~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----~~~-~~sp~~~-~--~~v~~~~~~g~v~al 205 (377)
T TIGR03300 136 EVLSPPLVANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALT----LRG-SASPVIA-D--GGVLVGFAGGKLVAL 205 (377)
T ss_pred eeecCCEEECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCcee----ecC-CCCCEEE-C--CEEEEECCCCEEEEE
Confidence 22211111233 467778899999999999988776653221000 000 0111111 2 356778888999999
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccc
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (471)
|.++++.........+............ .....+ .++..++...++.++.||..+++....
T Consensus 206 d~~tG~~~W~~~~~~~~g~~~~~~~~~~----~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~-------------- 266 (377)
T TIGR03300 206 DLQTGQPLWEQRVALPKGRTELERLVDV----DGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWK-------------- 266 (377)
T ss_pred EccCCCEeeeeccccCCCCCchhhhhcc----CCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEe--------------
Confidence 9988875433221111000000000000 000111 134444444578999999987632211
Q ss_pred cCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCC-cceEE
Q 012064 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-HVVNC 390 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~ 390 (471)
.. ... .... ..++..++.++.||.++.+|..+|+.+....... .....
T Consensus 267 ------------------------~~-~~~---~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 267 ------------------------RD-ASS---YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred ------------------------ec-cCC---ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc
Confidence 00 000 1111 2245677788889999999999998775543211 11222
Q ss_pred EEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 391 IEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 391 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
... .+..++.++.+|.|+++|..+++..
T Consensus 316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 316 PAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 222 4668888999999999999887764
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=4.2e-11 Score=119.63 Aligned_cols=197 Identities=16% Similarity=0.205 Sum_probs=152.0
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
++.|-..|.++.=+|...+.+||+.||.+++|....++.+..+...-...|+.+.|+. .|+.+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH--QGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc--cCCceeeeccCCceeecccC
Confidence 4445677888888999999999999999999999999988887666668999999999 99999999999999999986
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe---cCCeEEEEeccCCccceee-eecccCCcCcceeeeeeEEEEEc
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
.+.. ...+.|.....++.|-.. ++++++ .++.+.+||.--......+ .+ |...++++++.
T Consensus 2282 -pk~~--~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----------H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2282 -PKPY--TSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----------HDGGATVLAYA 2345 (2439)
T ss_pred -Ccce--eccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeee----------cCCCceEEEEc
Confidence 3333 236778888888888763 456553 5688999996544332222 22 67789999999
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
|. .++|++|+.+|.|++||++..++...+ +. +. ...++++++ .|.++||++..
T Consensus 2346 P~-~qllisggr~G~v~l~D~rqrql~h~~--------------------~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2346 PK-HQLLISGGRKGEVCLFDIRQRQLRHTF--------------------QA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred Cc-ceEEEecCCcCcEEEeehHHHHHHHHh--------------------hh----hh-hhheeeccCcccceEEEEccc
Confidence 98 689999999999999999987754321 01 33 345677776 78999999987
Q ss_pred CCCCCC
Q 012064 292 GLGPNP 297 (471)
Q Consensus 292 ~~~~~~ 297 (471)
-.....
T Consensus 2400 ~~ll~~ 2405 (2439)
T KOG1064|consen 2400 FGLLHT 2405 (2439)
T ss_pred cchhhc
Confidence 544333
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.9e-11 Score=107.05 Aligned_cols=176 Identities=20% Similarity=0.294 Sum_probs=129.2
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCC-------ceEEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
...+.||+..|..++--.+.+-+++++.|.+|++|.++.. .+..++ ..|+.+|.++.|.. +.++++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~--~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLA--DLRSIASC-- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeee--ccceeeec--
Confidence 3567899999999887667788999999999999998642 233444 78999999999998 88888876
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccC-CCcEEEE-EecCCeEEEEeccCCccceeeeecccCCcCcceeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (471)
||.|.+||.--+............+.+..+...++ ...+++. ++...+++++|.+..+....++.-.... ...
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~-----Pna 877 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG-----PNA 877 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-----Cch
Confidence 68899999876665442212222233333333333 2234444 4788999999999998877776542211 334
Q ss_pred eeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
-+.+++..|. |++++.+-.+|.|.+.|.++++.+.
T Consensus 878 ~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 878 LTRAIAVADK-GNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred heeEEEeccC-cchhhHHhcCCcEEEEecCCCceec
Confidence 5789999998 7899999999999999999987543
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=3.3e-09 Score=108.35 Aligned_cols=285 Identities=11% Similarity=0.070 Sum_probs=160.2
Q ss_pred EEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec--------------eeeeEEEEEEccCCCcEEEEEecCCe
Q 012064 109 QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK--------------HQGRAHKLAIEPGSPHVFYTCGEDGL 174 (471)
Q Consensus 109 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~dg~ 174 (471)
.+++++. ++..+++-..++.|+++|.... .... ... .-.....+++++++..++++-...+.
T Consensus 572 gvavd~~-~g~lyVaDs~n~rI~v~d~~G~-~i~~--ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 572 KLAIDLL-NNRLFISDSNHNRIVVTDLDGN-FIVQ--IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred eEEEECC-CCeEEEEECCCCeEEEEeCCCC-EEEE--EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 5677761 3556667677889999997532 2211 111 11235789999987544455555678
Q ss_pred EEEEeccCCccceeeeecccCC--cCc-----ceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCC
Q 012064 175 VQHFDLRTGAATELFTCRPIDD--RRN-----YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~--~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (471)
|+.+|+.++.. ..+....... ..+ .........++++|+++.++++...++.|++||..++.......-+..
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999877643 2221110000 000 000123468999997677778888889999999876543110000000
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCC
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
.. ..-.......-.....++++|+++.|+.+. ++.|++||+.++.........+. .+.. .......+
T Consensus 727 ~~-~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~---------~~~~-l~~fG~~d 795 (1057)
T PLN02919 727 RN-LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT---------FSDN-LFKFGDHD 795 (1057)
T ss_pred cc-CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc---------cCcc-cccccCCC
Confidence 00 000000001123457799999998655544 45899999876431100000000 0000 00000000
Q ss_pred CcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec-------------CCCcceEEEE
Q 012064 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-------------ADRHVVNCIE 392 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~-------------~h~~~v~~~~ 392 (471)
. ......+ .+ ...+++ +++|+.+++-..++.|++||..++....... +.-.....++
T Consensus 796 G---~g~~~~l-~~-----P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 796 G---VGSEVLL-QH-----PLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred C---chhhhhc-cC-----CceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE
Confidence 0 0000000 01 346777 9999988888889999999998776543221 1123578899
Q ss_pred EcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 393 PHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 393 ~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
++++|+++++-+.+++|++|++.+++.
T Consensus 866 vd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 866 LGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 999999988888999999999988654
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.27 E-value=1.3e-09 Score=87.91 Aligned_cols=245 Identities=12% Similarity=-0.013 Sum_probs=160.3
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC-CCEEEEecCCCeEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILW 88 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~-g~~l~s~~~d~~i~iw 88 (471)
-..||.|+.-|...+|...+.+... +.-..|...|+-+.=.-| .-.+..++.|.++++.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~--------------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHL--------------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred ccEEEeccccceeeeecccCcccce--------------------eeecccccchhhhhhhcccccceeeccCCcceeEE
Confidence 3578999999999999999766542 222334333322211111 2235567888899998
Q ss_pred ECCCCceEEEeecCCCc--ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceee-EeeceeeeEEEEEEccCCCcE
Q 012064 89 DWKTERVKLSFHSGHND--NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQGRAHKLAIEPGSPHV 165 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 165 (471)
+++-+...... |.. .+.++.+++ |++++++.++...|-.|.+......... .....++.-.+..|+..+ ..
T Consensus 144 ~~~~~s~~~~~---h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~ 217 (344)
T KOG4532|consen 144 VVSGDSNKFAV---HNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQ 217 (344)
T ss_pred EEecCccccee---eccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ce
Confidence 88755543333 322 388999999 9999999999999999998766543322 344445556778899887 57
Q ss_pred EEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC-ceEEEEeCCCeEEEEEcCCCccCCCCCC
Q 012064 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (471)
++++..||++.|||++.............+. |.+.+..+.|+|.|. .+|+..-.-+.+.+.|+++.+..+....
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~-----hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPH-----HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCC-----CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 9999999999999999875543332222211 667899999997532 2455555667899999998764332111
Q ss_pred CCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCC
Q 012064 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
.+ .....+....|..-.|+.++.-+.+.++..+.-|++...
T Consensus 293 ~~-------d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 293 PD-------DVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred Cc-------cccccccccccccccccCCCcccccccchhhheeecccc
Confidence 10 111122223377788888887777777777777777653
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=8.9e-09 Score=91.63 Aligned_cols=236 Identities=13% Similarity=0.117 Sum_probs=142.7
Q ss_pred CCCCCCCcEEEEecC-----------CCeEEEEEcccCccccccccceecccccceeeeeeeEEecc---ccccEEEEEE
Q 012064 4 ASNNNNNKRARTSVD-----------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HRGCVNTVSF 69 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~~~~ 69 (471)
+.|||+.++|++-+. ...++|||+.+|.+.. .+.. ....-.-..|
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr---------------------sF~~~~~~~~~WP~frW 313 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR---------------------SFPVIKSPYLKWPIFRW 313 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc---------------------ceeccCCCccccceEEe
Confidence 579999999998653 2578999999999873 2222 1122234689
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-----CeEEEEeccccCcceee
Q 012064 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGVETK 144 (471)
Q Consensus 70 s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~ 144 (471)
|.|++++|--..+ .|.||+..+-.++-. ..-....|....|+| .++.||--... .++.+-.+.+.+.+...
T Consensus 314 S~DdKy~Arm~~~-sisIyEtpsf~lld~-Kslki~gIr~FswsP--~~~llAYwtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 314 SHDDKYFARMTGN-SISIYETPSFMLLDK-KSLKISGIRDFSWSP--TSNLLAYWTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred ccCCceeEEeccc-eEEEEecCceeeecc-cccCCccccCcccCC--CcceEEEEcccccCCcceEEEEecCccceeeec
Confidence 9999999977665 699999776433221 123456788999999 77777653321 34556666555554432
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEE---------ecCCeEEEEeccCCccce-eeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTC---------GEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
.+ |.-.-..+.|-.+|.++.+-. +.-..+.|+.++...... ... -...|..++|.|.
T Consensus 390 nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-----------lke~vi~FaWEP~ 456 (698)
T KOG2314|consen 390 NL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-----------LKESVIAFAWEPH 456 (698)
T ss_pred cc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-----------cchheeeeeeccC
Confidence 22 222223456666675433221 112235566665544322 222 2336889999999
Q ss_pred CCceEEEE-e--CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee----CCcEEEE
Q 012064 215 NANLFAVA-G--SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLF 287 (471)
Q Consensus 215 ~~~~l~~~-~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~ 287 (471)
| ..+++- + ...++.+|.+++... .+..+..-.....+.+.|+|.|++++.+. .+.+..+
T Consensus 457 g-dkF~vi~g~~~k~tvsfY~~e~~~~-------------~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 457 G-DKFAVISGNTVKNTVSFYAVETNIK-------------KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred C-CeEEEEEccccccceeEEEeecCCC-------------chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 5 455443 3 235688888874211 11111112235568899999999988765 4579999
Q ss_pred ecCC
Q 012064 288 TQDM 291 (471)
Q Consensus 288 d~~~ 291 (471)
|...
T Consensus 523 D~~~ 526 (698)
T KOG2314|consen 523 DTDY 526 (698)
T ss_pred ecch
Confidence 9864
No 283
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=9.4e-10 Score=98.49 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=127.8
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec--cccccEEEEEEcCCCCEEEEecCCCe
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD--KHRGCVNTVSFNTDGDILISGSDDRR 84 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~~g~~l~s~~~d~~ 84 (471)
+.+...++-|...|.|.+|+...|+.. ..+. .|.+.|.++.++.+-..|.+++.|+.
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it---------------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEIT---------------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEE---------------------EEEecCCCCCcceeeecccccCceEecCCcee
Confidence 345567899999999999999988776 3443 69999999999999999999999999
Q ss_pred EEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC---
Q 012064 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--- 161 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 161 (471)
+..|+..+++.++.. ......+.+++.+| |+..+++++ ++|++||+++.+.+.. +.+|.++|.++.|-..
T Consensus 126 v~~~~~~~~~~~~~~-~~~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~--ftgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIW-KEQKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVIT--FTGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred EEEEecccceeeeee-ccCCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEE--ecCCCcceEEEEEEEeccc
Confidence 999999988877666 77888899999999 999999987 5799999999988876 9999999999999877
Q ss_pred --CCcEEEEEecCCeEEEEeccCCc
Q 012064 162 --SPHVFYTCGEDGLVQHFDLRTGA 184 (471)
Q Consensus 162 --~~~~l~~~~~dg~i~iwd~~~~~ 184 (471)
|.++|.+...+..+.+|-++...
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cccceeeeccccccceeEEEEEccc
Confidence 65666666677788888776643
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=3.4e-09 Score=97.95 Aligned_cols=245 Identities=14% Similarity=0.091 Sum_probs=157.5
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC-----------
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG----------- 73 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g----------- 73 (471)
.++|.| ++|-|+ ...|.+-|..+-+.+ +.+.-|...|+.+.|.|..
T Consensus 22 Dw~~~G-LiAygs-hslV~VVDs~s~q~i---------------------qsie~h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGS-HSLVSVVDSRSLQLI---------------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred ccCccc-eEEEec-CceEEEEehhhhhhh---------------------hccccCccceeEEEeccCCCchhccCcccc
Confidence 344443 555555 556778887755555 6888999999999998731
Q ss_pred -CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCC--eEEEEEeCCCeEEEEeccccCcceeeEeecee
Q 012064 74 -DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD--RSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 74 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
-+||++.-.|.|.+||...+..+..+ ..|..++.+++|-|..+. ..|++-.....+.+|+..+++..-. .....
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~ 155 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSH 155 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCC
Confidence 26788888999999999988877776 778899999999885443 3566666678999999999887654 33334
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCC----ccceeeeecccCCc---------Ccce---------eeeeeEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG----AATELFTCRPIDDR---------RNYM---------TVVNLNA 208 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~---------~~~~---------~~~~v~~ 208 (471)
....|+.+.|-+.+.+...+..|.+.+-+.-.. ...+.++....... .+.. .......
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 566779999877666777777777766654221 11222222111100 0000 0011224
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC--eEEEee-CCcEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--LLVSYN-DEFIY 285 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~-~~~i~ 285 (471)
++|+|.-.+.++. .....+.++|++-..... ...-..+.+.-+.+-|+++ .|.+.. +|.+.
T Consensus 236 faf~p~~rn~lfi-~~prellv~dle~~~~l~---------------vvpier~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 236 FAFSPHWRNILFI-TFPRELLVFDLEYECCLA---------------VVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred hhcChhhhceEEE-EeccceEEEcchhhceeE---------------EEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 6778874444444 456679999998654322 2222345556677777764 455554 88888
Q ss_pred EEecCC
Q 012064 286 LFTQDM 291 (471)
Q Consensus 286 i~d~~~ 291 (471)
+|-.+.
T Consensus 300 irvrk~ 305 (1062)
T KOG1912|consen 300 IRVRKE 305 (1062)
T ss_pred EEEeec
Confidence 887654
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.22 E-value=1.8e-10 Score=92.32 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=124.3
Q ss_pred EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 012064 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (471)
Q Consensus 12 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~ 91 (471)
.|+++..++.+.....-++.+... -+...+....+.+..|+++=.+-+.+-.++.+++++.||.+.+++.+
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~---------~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~ 119 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISL---------WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD 119 (319)
T ss_pred eeecccchhheeeeccceEEEech---------hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence 456666666666665554443320 01111223334444566555555555667889999999999999976
Q ss_pred CCceE-EEeecCCCcceeEEEEecCCCCeEEEEEe-----CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcE
Q 012064 92 TERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCA-----ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (471)
Q Consensus 92 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (471)
.-..+ .++...|.+ -.+.++.. .++.+.++. .-+..+.|+++..+.... .......|.+++-+|..+++
T Consensus 120 ~~~~~~~~i~~~~~~-~as~~~~~--~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~--~~~~~~~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 120 KDLALMSRIPSIHSG-SASRKICR--HGNSILSGGCGNWNAQDNFYANTLDPIKTLIP--SKKALDAVTALCSHPAQQHL 194 (319)
T ss_pred HHHhhhhhccccccc-ccccceee--cccEEecCCcceEeeccceeeecccccccccc--cccccccchhhhCCcccccE
Confidence 52211 111111211 12223333 444444432 123556676654433222 11222449999999988889
Q ss_pred EEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
+++|+.||.+.+||.++......+-.. |..++..+-|+|.++..|+++++||.+..||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~a---------hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKA---------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHH---------hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999988544332111 6678999999999999999999999999999874
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.20 E-value=5.4e-10 Score=95.34 Aligned_cols=166 Identities=12% Similarity=0.126 Sum_probs=117.0
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
...+++.++++|++..+....+++....... .++-....+......+..+..+......-.++..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---------------~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKG---------------AKLLDVSCVPKRPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCc---------------ceeeeEeecccCcceeeeeeccceEEEEeecCCc
Confidence 4568899999999999888878876633221 0111111222223334444333333333345556
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
..+.+|....+.+... -+|-..+++++|+| |+++++++..|..|++-.......+.. ..-+|..-|..++.-++.
T Consensus 132 ~~~di~s~~~~~~~~~--lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~f~Ies-fclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPI--LGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPATFVIES-FCLGHKEFVSTISLTDNY 206 (390)
T ss_pred eeeeeecccccCcchh--hhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcccchhh-hccccHhheeeeeeccCc
Confidence 6777887776555333 59999999999999 999999999999999988765554443 355799999999999875
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeee
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFT 190 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 190 (471)
.|++++.|+++++||+++++....+.
T Consensus 207 --~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 207 --LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred --eeeecCCCCcEEEEecccCCcccccc
Confidence 58999999999999999998875543
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=3.3e-08 Score=101.20 Aligned_cols=277 Identities=12% Similarity=0.124 Sum_probs=158.9
Q ss_pred EEEEEcCC-CCEEEEecCCCeEEEEECCCCceEEEeec-CC------------CcceeEEEEecCCCCeEEEEEeC-CCe
Q 012064 65 NTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHS-GH------------NDNVFQAKIMPFTDDRSIVTCAA-DGQ 129 (471)
Q Consensus 65 ~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~------------~~~v~~~~~~~~~~~~~l~s~~~-dg~ 129 (471)
..++++++ +.++++-..++.|++||.. ++.+..+.. +. -..-..+++.+ +++.|+.+.. .+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence 45788875 5677777788899999975 554444421 11 12347889998 7776666544 567
Q ss_pred EEEEeccccCcceeeEeec-----------------eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeec
Q 012064 130 VRHAQILERGGVETKLLGK-----------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 192 (471)
|+.+|..++.. .. +.+ .-.....++++|++..++++.+.++.|++||..++.... +...
T Consensus 648 Ir~id~~~~~V-~t--lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~ 723 (1057)
T PLN02919 648 LREIDFVNETV-RT--LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGD 723 (1057)
T ss_pred EEEEecCCCEE-EE--EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecC
Confidence 99998765432 11 110 012346799999655777888888999999998765421 1110
Q ss_pred c-cCCcCc----ceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc-------CCC
Q 012064 193 P-IDDRRN----YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-------GDE 260 (471)
Q Consensus 193 ~-~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 260 (471)
. .....+ .........++++|+++.++++-..++.|++||+.++..... ..+.+.........- ...
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~-~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL-AGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecccccCcccccccCCCCchhhhh
Confidence 0 000000 001234578999999555666777789999999986542100 000000000000000 000
Q ss_pred ccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecC
Q 012064 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (471)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (471)
-.....++++++|.++++-. ++.|++||..++........ +. ....+ . ....+.
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~---------------G~---~G~~d----G---~~~~a~ 857 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT---------------GK---AGFKD----G---KALKAQ 857 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc---------------CC---cCCCC----C---cccccc
Confidence 11245889999998766665 56899999876532111000 00 00000 0 001111
Q ss_pred CceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee
Q 012064 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (471)
Q Consensus 340 ~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~ 377 (471)
-. ....+++ +++|+.+++-+.++.|++||+.+++.
T Consensus 858 l~--~P~GIav-d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LS--EPAGLAL-GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cC--CceEEEE-eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11 1567787 99999888888899999999988764
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.16 E-value=6e-08 Score=89.79 Aligned_cols=317 Identities=12% Similarity=0.096 Sum_probs=174.5
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc-cccEE-EEEEcCCCCEEEEecCCCeEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVN-TVSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~-~~~~s~~g~~l~s~~~d~~i~ 86 (471)
.+.++++++.+|.+.-+|.++|+.+-+..... .. ..+... ...+. .+.. ++..++.++.++.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~--------~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ 133 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSE----KD--------GWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVY 133 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCC----cc--------cccccccccccccccEE--ECCEEEEEcCCCEEE
Confidence 35677888889999999999998763110000 00 000000 00110 1111 355677788899999
Q ss_pred EEECCCCceEEEeecCCCcceeE-EEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee---EEEEEEccCC
Q 012064 87 LWDWKTERVKLSFHSGHNDNVFQ-AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGS 162 (471)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~ 162 (471)
-+|.++|+.+.+... .+.+.+ ... .+..++.+..++.+..+|..+++..-.......... ..+.... ++
T Consensus 134 ald~~tG~~~W~~~~--~~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~ 206 (394)
T PRK11138 134 ALNAEDGEVAWQTKV--AGEALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG 206 (394)
T ss_pred EEECCCCCCcccccC--CCceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC
Confidence 999999998877632 222222 122 344566677789999999988876544221110000 0011111 23
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC--CCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
.++.++.+|.+..+|.++++.............. .......+..+| . +..++.++.+|.+..+|..+++...
T Consensus 207 --~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~---~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W 280 (394)
T PRK11138 207 --GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT---EIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVW 280 (394)
T ss_pred --EEEEEcCCCEEEEEEccCChhhheeccccCCCcc---chhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEE
Confidence 3667788999999999999877655432111000 000001111112 1 2356667788999999999886433
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCcc
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
...++ ....+.. .+++.++...++.++.+|..+++......
T Consensus 281 ~~~~~-----------------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~--------------------- 321 (394)
T PRK11138 281 KREYG-----------------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQS--------------------- 321 (394)
T ss_pred eecCC-----------------CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccc---------------------
Confidence 21110 0011111 23444444557789999987764322100
Q ss_pred CCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceE-EEEEcCCCCE
Q 012064 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTV 399 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~ 399 (471)
.... .. ..+... .+.+|+.++.||.++..|..+|+.+...+-....+. ...+ .+..
T Consensus 322 --------------~~~~-~~---~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~ 378 (394)
T PRK11138 322 --------------DLLH-RL---LTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDK 378 (394)
T ss_pred --------------ccCC-Cc---ccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCE
Confidence 0000 00 111111 245678889999999999999998877654333332 2222 2457
Q ss_pred EEEeecCCcEEEecC
Q 012064 400 LASSGIESDIKILTP 414 (471)
Q Consensus 400 l~s~~~dg~i~iw~~ 414 (471)
|+.++.||.|+.+++
T Consensus 379 l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 379 LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCceEEEEeC
Confidence 788889999988764
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=3.8e-08 Score=90.64 Aligned_cols=173 Identities=9% Similarity=0.060 Sum_probs=102.9
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeE-EEEEeC---CCeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
..|.+=|.+..+ .+.+..+ +......|+| ||+. ++..+. +..|.++|+.+++... +....+......|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~---lt~~~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEK---IASSQGMLVVSDV 240 (419)
T ss_pred ceEEEECCCCCc-eeEEccC--CCeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEE---EecCCCcEEeeEE
Confidence 456665654333 3444333 3777899999 9985 554333 3468888887765543 3334455566789
Q ss_pred ccCCCcEEEEEecC--CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC--eEEEEEcC
Q 012064 159 EPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIR 234 (471)
Q Consensus 159 ~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~ 234 (471)
+|||.+++++.+.+ ..|.++|+.+++..+.... ........|+||+..++++....+ .|++.|+.
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~-----------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNY-----------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccC-----------CCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99998777766555 4688888877764332211 111234579999544555544444 57777877
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C-------C--cEEEEecCCC
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-------E--FIYLFTQDMG 292 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-------~--~i~i~d~~~~ 292 (471)
+++... +..... ....|+|||++|+... . + .|++.|+.++
T Consensus 310 ~g~~~r---------------lt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 310 SGSVEQ---------------VVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCeEe---------------CccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 654211 111101 1248999999887655 2 2 4677777654
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.13 E-value=4.4e-08 Score=80.55 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=93.0
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCc----eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc
Q 012064 66 TVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (471)
Q Consensus 66 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 141 (471)
.++.+.+|+.||.- .|..|.|-..++.- ....+.+.....-..++|+| |+..|+.+...|+|+++|+...+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccceeE
Confidence 46778899988875 56678887654421 12233344445667899999 9999999999999999998654332
Q ss_pred eee----EeeceeeeEEEEEEccCC-----CcEEEEEecCCeEEEEeccCCc--c---ceeeeecccCCcCcceeeeeeE
Q 012064 142 ETK----LLGKHQGRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 142 ~~~----~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
... ....-...|.++.|.+.. ...|++-..+|.++-|-+..+. . ...+..... ....|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~-------yp~Gi~ 151 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH-------YPHGIN 151 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-------CCCcee
Confidence 110 011123556677775432 2357777888888877763322 1 112221110 344799
Q ss_pred EEEEcCCCCceEEEEeCC
Q 012064 208 AIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~d 225 (471)
++.++|. .++|++|+..
T Consensus 152 ~~vy~p~-h~LLlVgG~~ 168 (282)
T PF15492_consen 152 SAVYHPK-HRLLLVGGCE 168 (282)
T ss_pred EEEEcCC-CCEEEEeccC
Confidence 9999998 4666666543
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=9.8e-10 Score=90.54 Aligned_cols=259 Identities=14% Similarity=0.171 Sum_probs=156.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc------------cccEEEEEE
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH------------RGCVNTVSF 69 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h------------~~~V~~~~~ 69 (471)
..+-|...|.+|++|...|.|.++..+...-- ..+....+++| ...|..+.|
T Consensus 30 taVefd~tg~YlatGDkgGRVvlfer~~s~~c----------------eykf~teFQshe~EFDYLkSleieEKin~I~w 93 (460)
T COG5170 30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGC----------------EYKFFTEFQSHELEFDYLKSLEIEEKINAIEW 93 (460)
T ss_pred eEEEeccccceEeecCCCceEEEeeccccccc----------------chhhhhhhcccccchhhhhhccHHHHhhheee
Confidence 45667788999999988899999987743300 01112234444 345788888
Q ss_pred cCCC--CEEEEecCCCeEEEEECCCCce-------------------------------------E-----EEeecCCCc
Q 012064 70 NTDG--DILISGSDDRRVILWDWKTERV-------------------------------------K-----LSFHSGHND 105 (471)
Q Consensus 70 s~~g--~~l~s~~~d~~i~iwd~~~~~~-------------------------------------~-----~~~~~~~~~ 105 (471)
-.++ ..++..+.|.+|++|.+..... + +.....|..
T Consensus 94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 6654 3455567889999998743200 0 011145777
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee-eEeece-----eeeEEEEEEccCCCcEEEEEecCCeEEEEe
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKH-----QGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 179 (471)
.|.++.|.. |.+.++++. |=.|.+|++.-...... ..+..| ...|++..|+|....++.-++..|.|++-|
T Consensus 174 hiNSiS~Ns--D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 174 HINSISFNS--DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred EeeeeeecC--chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 888999987 888887765 66899999865433211 112222 356889999998878888889999999999
Q ss_pred ccCCccc----eee--eecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCC
Q 012064 180 LRTGAAT----ELF--TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (471)
Q Consensus 180 ~~~~~~~----~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (471)
++....- ..+ ...+....--..-...|..+.|+|. ++++++-+ --++++||.+..+. |......
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvkiwDvnm~k~--------pikTi~~ 320 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVKIWDVNMAKN--------PIKTIPM 320 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEEEEecccccC--------Cceeech
Confidence 9854321 111 1110000000002346888999998 67777544 45899999987652 1111100
Q ss_pred Cccc------CCCccce---EEEEEcCCCCeEEEee-CCcEEEEec
Q 012064 254 PNLI------GDEQVGI---TGLAFSDQSELLVSYN-DEFIYLFTQ 289 (471)
Q Consensus 254 ~~~~------~~~~~~i---~~~~~~~~~~~l~~~~-~~~i~i~d~ 289 (471)
.... .-....| ..+.|+.|.+.+.+|+ .+..-+|..
T Consensus 321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 0000 0011222 4578888888888887 445555553
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.8e-09 Score=92.28 Aligned_cols=282 Identities=12% Similarity=0.095 Sum_probs=185.1
Q ss_pred CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-eeeEeeceeeeEEEEEEccCCCcEEEEEec-CCeEEEEe
Q 012064 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFD 179 (471)
Q Consensus 102 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd 179 (471)
-|...|+.+.-. -.+++++++.||.++.|.-..-..+ ..+.+..|...|.+++.+-++ .++.+.+. |..++++|
T Consensus 7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEE
Confidence 477778776554 5789999999999999986442222 223356788889999999998 67788677 99999999
Q ss_pred ccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc
Q 012064 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (471)
+++-..+..++....+. ..+...+|.+. .+-++...+|.+.++|-..... .+....
T Consensus 83 vEn~DminmiKL~~lPg---------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------------q~~~fk 140 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPG---------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------------QDGYFK 140 (558)
T ss_pred eeccchhhhcccccCCC---------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------------ccceec
Confidence 99877765554432211 11222222111 2333445778899999775431 112334
Q ss_pred CCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee
Q 012064 258 GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (471)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
.-|..+|..+.++|-+..+++.. .|.|.-|..+... +++....... .....-+..+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~---qfPr~~l~~~--------------------~K~eTdLy~f 197 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF---QFPRTNLNFE--------------------LKHETDLYGF 197 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcc---cCcccccccc--------------------ccccchhhcc
Confidence 55788999999999998888887 6789999876411 0000000000 0000111112
Q ss_pred ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec--------------------------------CC
Q 012064 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--------------------------------AD 384 (471)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~--------------------------------~h 384 (471)
..... ...++.| +|+|..+.+-+.|..|++++.++|++++.+. .|
T Consensus 198 ~K~Kt--~pts~Ef-sp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 198 PKAKT--EPTSFEF-SPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred ccccc--CccceEE-ccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 22222 2678888 9999999999999999999999887665432 11
Q ss_pred C-cceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccCcchheeehhhHHH
Q 012064 385 R-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQAMMMTMTM 436 (471)
Q Consensus 385 ~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 436 (471)
. ..-+.+.|...|++|.-++-=| |++.++.++++.+..+..+.+..++...
T Consensus 275 ~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl 326 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSL 326 (558)
T ss_pred cCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHH
Confidence 1 1235678888899988886544 9999999999988888877655554443
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.10 E-value=8.9e-07 Score=76.28 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=133.9
Q ss_pred EEEEcC-CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEe-cCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 66 TVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIM-PFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 66 ~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
++.|.+ ++.++++.-..+.|..|+..+++... + ... . ...+++. + ++. ++.+... .+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~-~~~-~-~~G~~~~~~--~g~-l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-I-DLP-G-PNGMAFDRP--DGR-LYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-E-ESS-S-EEEEEEECT--TSE-EEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-E-ecC-C-CceEEEEcc--CCE-EEEEEcC-ceEEEecCCCcEEEE
Confidence 567888 77788887788999999998776533 2 111 1 6677777 5 554 4555544 456668877654433
Q ss_pred eEee--c-eeeeEEEEEEccCCCcEEEEEecC--------CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 144 KLLG--K-HQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 144 ~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
.... . .....+.+++.|+| ++.++.... |.+..++.. ++...... .....+.++|+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----------~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----------GLGFPNGIAFS 142 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------EESSEEEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEec-----------CcccccceEEC
Confidence 2221 1 34668899999999 455554432 456666665 33332222 22245778888
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCC
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
|++..++++-+..+.|..|++..... .+... -.+++...
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~------------------------~~~~~----------------~~~~~~~~- 181 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGG------------------------ELSNR----------------RVFIDFPG- 181 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTC------------------------CEEEE----------------EEEEE-SS-
T ss_pred CcchheeecccccceeEEEecccccc------------------------ceeee----------------eeEEEcCC-
Confidence 88433444556666677777653210 00000 00011110
Q ss_pred CCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
... ..-.+++ +.+|++.++....+.|.++|.
T Consensus 182 ----------------------------------------------~~g--~pDG~~v-D~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 182 ----------------------------------------------GPG--YPDGLAV-DSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ----------------------------------------------SSC--EEEEEEE-BTTS-EEEEEETTTEEEEEET
T ss_pred ----------------------------------------------CCc--CCCcceE-cCCCCEEEEEcCCCEEEEECC
Confidence 001 1456777 899998888778899999998
Q ss_pred cCCeeeEEecCCCcceEEEEEc-CCCCEEEE
Q 012064 373 KGGELIRVIEADRHVVNCIEPH-PHSTVLAS 402 (471)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s 402 (471)
+ |+.+..+......+++++|. ++.+.|+.
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 6 88888877665689999994 66564443
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=3.2e-07 Score=75.57 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=127.6
Q ss_pred EEEecCCCCeEEEEEeCCCeEEEEeccccCc--ceeeEeec-eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc
Q 012064 110 AKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (471)
Q Consensus 110 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 186 (471)
++.+. +|+.||..- |..|.|=..++.-. +.+..... ..-.-..++|+||+ .+++.+...|+|++||+...+..
T Consensus 3 ~~~~~--~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 3 LALSS--DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eeecC--CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE
Confidence 34455 777766654 44554443332211 11111111 11224679999999 68899999999999999864432
Q ss_pred eeeeecccCCcCcceeeeeeEEEEEcCCC-----CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCc
Q 012064 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (471)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (471)
.+.... ...+ .....|..+.|-+-. ...|++-..+|.++-|-+..+.... ........+.....
T Consensus 79 -~I~p~~--~~~~-d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-------y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 79 -VIPPAM--SFPG-DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-------YQENHSFSFSSHYP 147 (282)
T ss_pred -EcCccc--ccCC-ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-------ceeeEEEEecccCC
Confidence 222111 0111 123356666665431 2246666778888877764321100 00000011223346
Q ss_pred cceEEEEEcCCCCeEEEeeCC-c-----------EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccc
Q 012064 262 VGITGLAFSDQSELLVSYNDE-F-----------IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (471)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~~~-~-----------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (471)
..|.++.++|..++|+.++.. . +..|.+-+
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-------------------------------------- 189 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-------------------------------------- 189 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC--------------------------------------
Confidence 689999999998887776522 1 11221111
Q ss_pred ccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC------eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEe
Q 012064 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg------~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (471)
+ +|..+.+. ..+|+ +--+|.+-+.+...........|..|..||||+.||+.
T Consensus 190 --------~-------------~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i 247 (282)
T PF15492_consen 190 --------D-------------SPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI 247 (282)
T ss_pred --------C-------------CCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence 1 22222211 11111 11233333322222222345689999999999999999
Q ss_pred ecCCcEEEecCCCCCCc
Q 012064 404 GIESDIKILTPNAADRA 420 (471)
Q Consensus 404 ~~dg~i~iw~~~~~~~~ 420 (471)
..+|.|.+|++.+-.+.
T Consensus 248 h~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 248 HFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred EcCCeEEEEecCcchhh
Confidence 99999999999876543
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=6.2e-08 Score=78.50 Aligned_cols=197 Identities=14% Similarity=0.030 Sum_probs=130.3
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee--
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-- 151 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 151 (471)
.+||.||..|...+|...+.+....+...|...|.-+.=.. ...--+..++.|.++++.++..+..... .|..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c-d~~~~~~i~sndht~k~~~~~~~s~~~~----~h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC-DLKFPLNIASNDHTGKTMVVSGDSNKFA----VHNQNL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhc-ccccceeeccCCcceeEEEEecCcccce----eecccc
Confidence 58999999999999999877765555455555443222111 0122356677888899888865544322 2332
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
...++++++++ .+.++.+....|-.|.+..... .......+ ....-.+..|+.. ...+|++..||++.+
T Consensus 160 ~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~--------t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 160 TQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAP--------TSDHGFYNSFSEN-DLQFAVVFQDGTCAI 229 (344)
T ss_pred ceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecc--------cCCCceeeeeccC-cceEEEEecCCcEEE
Confidence 37889999999 5788888888999998865432 22212211 1112356788887 678999999999999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe---EEEeeCCcEEEEecCCCCCC
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL---LVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---l~~~~~~~i~i~d~~~~~~~ 295 (471)
||++....... ........|.+.++.+.|++.|.+ +.+-.-+.+.+.|+++....
T Consensus 230 ~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 230 YDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred EEecccccchh----------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99998652111 112234568899999999987642 33333567999999886543
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=3.6e-07 Score=77.72 Aligned_cols=241 Identities=18% Similarity=0.156 Sum_probs=154.0
Q ss_pred CCCCCC-CCcEEEEecCCC-eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 3 DASNNN-NNKRARTSVDKA-LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 3 ~~~~~~-~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
.++.+| .+..++.+..-| -..+||..+|+.+... .-..-+.|.|| -.||+||++|++.-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------~a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------WAPPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------cCCCCCEEecC------EEEcCCCCEEEEec
Confidence 456677 455677777766 5678999999877411 11223566666 47999999999753
Q ss_pred -----CCCeEEEEECC-CCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC------------------CCeEEEEecc
Q 012064 81 -----DDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA------------------DGQVRHAQIL 136 (471)
Q Consensus 81 -----~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------------dg~i~iwd~~ 136 (471)
..|.|-|||.. .-+.+.++ ..|.-.-..+.+.| |++.|+.+.. +-.+...|..
T Consensus 70 nd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~p--DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMP--DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred cccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcC--CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 35899999998 44556666 55655667788999 9988877632 1245556667
Q ss_pred ccCcceeeEe--eceeeeEEEEEEccCCCcEEEEEecCC-------eEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 137 ERGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGEDG-------LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 137 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
+++.+....+ ..|...|..+++.++| .+++..-..| -+-+++ .++....+..... ........+-
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~---~~~~l~~Y~g 220 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEE---QWRRLNGYIG 220 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChH---HHHhhCCceE
Confidence 7776666556 4477889999999998 3433332221 122332 2222222221110 0111345789
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEE
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~ 287 (471)
++++++++....+++=..+.+.+||..++++..... -..+..++..+++ ++++.+.|.+...
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----------------l~D~cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----------------LPDACGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----------------cCceeeeeecCCc-eEEeCCCccEEEc
Confidence 999999954455666678889999999988654322 2346777777777 7777777765544
Q ss_pred ec
Q 012064 288 TQ 289 (471)
Q Consensus 288 d~ 289 (471)
+.
T Consensus 283 ~~ 284 (305)
T PF07433_consen 283 SP 284 (305)
T ss_pred cC
Confidence 43
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.5e-09 Score=90.10 Aligned_cols=267 Identities=11% Similarity=0.015 Sum_probs=172.3
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC-CCeE
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-DRRV 85 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~-d~~i 85 (471)
....+++.+++-||.++.|....-.- .+.+..+..|-+.|.+++.+-+|.++.|.+. |..+
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs~isG------------------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKSRISG------------------VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred eehhheEEeeecchhhhhcCCCCccc------------------eeehhhhHHHHHHHHhhhccccceeEeeccCcccce
Confidence 34567899999999999998762111 1334567789999999999999999999777 9999
Q ss_pred EEEECCCCceEEEee-cCCCcceeEEEEecCCCCe-EEE-EEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 86 ILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDR-SIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 86 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
+++|+++-..+.-+. ....+.+ +...+|. |.. .++ +...+|.+.++|-....+.....-.-|..+|..+.+++.+
T Consensus 79 KvfDvEn~DminmiKL~~lPg~a-~wv~skG-d~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKLVDLPGFA-EWVTSKG-DKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eEEEeeccchhhhcccccCCCce-EEecCCC-CeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 999998755432111 1111111 2223330 111 233 3345788999997665544433345689999999999998
Q ss_pred CcEEEEEecCCeEEEEeccC------CccceeeeecccCCc-CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRT------GAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
..+++....|.|.-|..+. .+....++. .... .-........++.|+|+ +..+.+-..|..|+++++++
T Consensus 157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~--eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKH--ETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred -cceeeccccceeEeecCCCcccCccccccccccc--cchhhcccccccCccceEEccc-cCcccccCcccEEEEEEecc
Confidence 4678888899999998773 111111110 0000 00013345789999999 68888888999999999999
Q ss_pred CccCCCCCCCCC------CCcCCCCc------------ccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCC
Q 012064 236 YKWDGSTDFGQP------ADYFCPPN------------LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP 297 (471)
Q Consensus 236 ~~~~~~~~~~~~------~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~ 297 (471)
+++.+.++-... ...+.+.. +.......-+.+.|...|++|+.++-=.|++.++.++.....
T Consensus 233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri 312 (558)
T KOG0882|consen 233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRI 312 (558)
T ss_pred chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEE
Confidence 987654332111 11111110 111122345678899999999988877789999888764433
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.1e-09 Score=95.57 Aligned_cols=248 Identities=12% Similarity=0.146 Sum_probs=163.2
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc-----ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeE
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 175 (471)
.+|...|..+.-.. +.+.+++++.|+++++|.++.... .....+..|..+|.++.|..+.. .+ .+-||.|
T Consensus 732 ~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~ScD~gi 806 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--ASCDGGI 806 (1034)
T ss_pred cCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--eeccCcc
Confidence 68999998887766 788999999999999999864321 12345778999999999998873 33 4568899
Q ss_pred EEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE-EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCC
Q 012064 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (471)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (471)
.+||.--++........+. +.....|.++.-- + ..++.. ++...+++++|.+..++.......
T Consensus 807 HlWDPFigr~Laq~~dapk-----~~a~~~ikcl~nv-~-~~iliAgcsaeSTVKl~DaRsce~~~E~kVc--------- 870 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPK-----EGAGGNIKCLENV-D-RHILIAGCSAESTVKLFDARSCEWTCELKVC--------- 870 (1034)
T ss_pred eeecccccchhHhhhcCcc-----cCCCceeEecccC-c-chheeeeccchhhheeeecccccceeeEEec---------
Confidence 9999877776554332221 1123344444321 2 334444 478889999999987755432210
Q ss_pred cccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCC
Q 012064 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (471)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (471)
...+.+..+++++..+.|+.++.+- +|.|.+.|.++++.++....
T Consensus 871 -na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp--------------------------------- 916 (1034)
T KOG4190|consen 871 -NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP--------------------------------- 916 (1034)
T ss_pred -cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc---------------------------------
Confidence 1133456789999999999988765 78999999999865544220
Q ss_pred eeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE-EEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEe
Q 012064 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI-WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (471)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i-wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (471)
.... ...++ .|..+.|+....|.++.+ |...+|....+.+....+..-+ -.-|..|+++.....+.+|
T Consensus 917 -----mecd--llqla--apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 917 -----MECD--LLQLA--APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred -----ccch--hhhhc--CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEE
Confidence 0000 22232 466677887778888888 8887776665555443332211 1235667777766677777
Q ss_pred cC
Q 012064 413 TP 414 (471)
Q Consensus 413 ~~ 414 (471)
.-
T Consensus 986 ad 987 (1034)
T KOG4190|consen 986 AD 987 (1034)
T ss_pred ec
Confidence 43
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=2.9e-09 Score=61.85 Aligned_cols=38 Identities=29% Similarity=0.653 Sum_probs=35.7
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
++.+++++|.+.|++++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35589999999999999999999999999999999997
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=1.7e-08 Score=86.33 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=112.0
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEee--cCCCcceeEEEEecCCCCeEEEEEeC---CCeEEEEecccc
Q 012064 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILER 138 (471)
Q Consensus 64 V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~ 138 (471)
...+..++++++||.+..+....++++........+. ..-...-+.+.|.. +......+.. ...+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~--~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR--EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee--ccceEEEEeecCCceeeeeeccccc
Confidence 3445567888999988887776677665433211111 11222334555555 5555544443 445556665543
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
.+.. .-+|-..++.++|+||+ ..++++..|..|++-.......+..+-.. |..-|..++.-++ +.
T Consensus 143 ~~~~---~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclG---------H~eFVS~isl~~~--~~ 207 (390)
T KOG3914|consen 143 RCEP---ILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLG---------HKEFVSTISLTDN--YL 207 (390)
T ss_pred Ccch---hhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccc---------cHhheeeeeeccC--ce
Confidence 3332 66899999999999999 58899999999999887766655555431 5557889998885 57
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDF 244 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (471)
|++++.|+++++||+++++......+
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccch
Confidence 89999999999999999987655443
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=3.6e-09 Score=61.44 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=37.0
Q ss_pred CeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
|+++..+++|.+.|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=1.7e-08 Score=81.32 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=97.1
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecc-ccccEEEEEEcCCCCEEEEecC-----C
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGSD-----D 82 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~~~-----d 82 (471)
.+..++++..||.+.+.+.+.-..+ .+++.. |.+. .+.+....++++.+++- -
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~--------------------~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLAL--------------------MSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhh--------------------hhhcccccccc-cccceeecccEEecCCcceEeec
Confidence 4577999999999999998841111 111111 1111 11222234455544332 2
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
+..+.|+++..+......+. ...|.+++-+|. ..+.+++|+.||.+.+||.+...... ..+..|..+++.+-|+|.+
T Consensus 159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~-S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPV-SLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeecccccccccccccc-cccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchH-HHHHHhhhhhhheeccCCC
Confidence 34566666543322222122 234899999992 34556677889999999998874432 3478899999999999998
Q ss_pred CcEEEEEecCCeEEEEeccC
Q 012064 163 PHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~ 182 (471)
+..|+++++||.+..||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 88899999999999999774
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=8.7e-06 Score=70.17 Aligned_cols=219 Identities=16% Similarity=0.180 Sum_probs=135.2
Q ss_pred CCCC-CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEc-CCCCEEEEecCC
Q 012064 5 SNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN-TDGDILISGSDD 82 (471)
Q Consensus 5 ~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s-~~g~~l~s~~~d 82 (471)
.+.+ ++.++++-...+.|..|+..+++.. .+... . ...+++. +++.++++ ..+
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----------------------~~~~~-~-~~G~~~~~~~g~l~v~-~~~ 60 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----------------------VIDLP-G-PNGMAFDRPDGRLYVA-DSG 60 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------EEESS-S-EEEEEEECTTSEEEEE-ETT
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEE----------------------EEecC-C-CceEEEEccCCEEEEE-EcC
Confidence 4455 7788888888999999999976643 12211 2 6677777 67655554 444
Q ss_pred CeEEEEECCCCceEEEeec---C-CCcceeEEEEecCCCCeEEEEEeCC--------CeEEEEeccccCcceeeEeecee
Q 012064 83 RRVILWDWKTERVKLSFHS---G-HNDNVFQAKIMPFTDDRSIVTCAAD--------GQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
+ +.++|..+++....... . .....+++++.| +|+..++.... |.+..++.. ..... ....-
T Consensus 61 ~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~--~~~~~ 133 (246)
T PF08450_consen 61 G-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTV--VADGL 133 (246)
T ss_dssp C-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEE--EEEEE
T ss_pred c-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEE--EecCc
Confidence 4 56669888865333321 1 345788999999 99977776543 445555554 22221 33344
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc-ceeee-ecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFT-CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (471)
...+.++|+|+++.++++-+..+.|..+++..... ..... ...... .......++++.+ +++.++....+.|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~g~pDG~~vD~~-G~l~va~~~~~~I 207 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-----GPGYPDGLAVDSD-GNLWVADWGGGRI 207 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-----SSCEEEEEEEBTT-S-EEEEEETTTEE
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-----CCcCCCcceEcCC-CCEEEEEcCCCEE
Confidence 56789999999976667778889999999875433 11111 111110 1124678999998 6777777788999
Q ss_pred EEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc-CCCCeEE
Q 012064 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLV 277 (471)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 277 (471)
.+++.+ +++..... .. ...+++++|. ++.+.|.
T Consensus 208 ~~~~p~-G~~~~~i~--------------~p-~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 208 VVFDPD-GKLLREIE--------------LP-VPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEETT-SCEEEEEE---------------S-SSSEEEEEEESTTSSEEE
T ss_pred EEECCC-ccEEEEEc--------------CC-CCCEEEEEEECCCCCEEE
Confidence 999987 54332211 11 2368899994 5655444
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=2.5e-08 Score=91.87 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=145.3
Q ss_pred EEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 55 AKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
..+.||...|+.+.|+|.. ..|++++.|-.+..||+.+..........-......++|+- ....+.+.+....|++|
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny--k~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY--KDPNVLASSHGNDIFVW 185 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc--cCcchhhhccCCceEEE
Confidence 5688999999999999976 68899999999999999876643333244455677899987 44444555556789999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
|.+.+.... ..+++|...++.++|+.-....+.+++.|++++.||............. ...++..-++-|
T Consensus 186 d~r~gs~pl-~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---------t~~piw~~r~~P 255 (1081)
T KOG0309|consen 186 DLRKGSTPL-CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT---------TNFPIWRGRYLP 255 (1081)
T ss_pred eccCCCcce-EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc---------ccCcceeccccc
Confidence 998776544 3477899999999998755457899999999999998765433222111 233455556666
Q ss_pred CCCceEEEEeC-CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC----------eEEEee-C
Q 012064 214 RNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE----------LLVSYN-D 281 (471)
Q Consensus 214 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~l~~~~-~ 281 (471)
-+..+.+--.. +..+.+++-++...... ......+.+.+.+|...|....|-..+. .|++-+ |
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n-----~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD 330 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWN-----VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD 330 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhc-----cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC
Confidence 54333332222 22344554444322211 1122345667778888777766654221 477777 4
Q ss_pred CcEEEEecCC
Q 012064 282 EFIYLFTQDM 291 (471)
Q Consensus 282 ~~i~i~d~~~ 291 (471)
-.+++|.+..
T Consensus 331 ~~lrlWpI~~ 340 (1081)
T KOG0309|consen 331 QTLRLWPIDS 340 (1081)
T ss_pred CceEeeeccH
Confidence 4899998865
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=8.2e-09 Score=86.47 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=115.2
Q ss_pred EEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCC
Q 012064 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (471)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (471)
++.+.+..+-+-|++++..... . ....|.++.|... ++++..|+.+|.|..+|++.+..-.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf-~-----------sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~------ 288 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF-Q-----------SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGN------ 288 (425)
T ss_pred ecccccceeEEEEeeccccccc-c-----------cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCC------
Confidence 5566677788889888854322 2 4457888999886 6899999999999999999863211
Q ss_pred CCCcCCCCcccCCCccceEEEEEcC-CCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCC
Q 012064 247 PADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (471)
..+ ...--|.+.|+++..-. ++++|.+.+ +++|.+||.+.-+.
T Consensus 289 ---~~~--a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------------------------------ 333 (425)
T KOG2695|consen 289 ---GWC--AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------------------------------ 333 (425)
T ss_pred ---Ccc--eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------------------------------
Confidence 111 12223567788888766 666666555 88999999986422
Q ss_pred CCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCC
Q 012064 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~ 385 (471)
...+..++||.+...-.-+-. .+....++++++|...|||.+.+|.++.+++...
T Consensus 334 -----~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 334 -----KKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred -----ccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 234788999987644444444 7778899999999999999999999998886543
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4e-07 Score=85.16 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=128.9
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
++.++-|..+|.+++.+.+ |... +...|+.. ..+|.+++||+.||+|.|-.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~~----------------------~~~~~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNPK----------------------TNFDHSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred cceeeeccccceEEEEecC-Cccc----------------------cccccccc------ccCCceEEEecCCCcEEEee
Confidence 5678999999999999987 3321 12234433 66899999999999999999
Q ss_pred CCCCceEEEeecCCCcceeEEEEecCCC-----CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCc
Q 012064 90 WKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (471)
+.+.+...++ ....++.+++++| + .+.+++|+..| +.++.-.--+......+....++|.++.|.- +
T Consensus 100 l~~~~~~~~~--df~rpiksial~P--d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~ 171 (846)
T KOG2066|consen 100 LFTDDEITQY--DFKRPIKSIALHP--DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---N 171 (846)
T ss_pred ccCCccceeE--ecCCcceeEEecc--chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---c
Confidence 9888876665 4567999999999 6 57899999888 7776543222222223666778999999974 4
Q ss_pred EEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
+++-+..+| |++||+.+++.+..++......+ .......+.|.++ ..++.|-.| +|++..++.+
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~~--~~LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQDE--DRLVIGWGD-SVKICSIKKR 235 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecCC--CeEEEecCC-eEEEEEEecc
Confidence 666666554 99999999887766554332111 2233456888876 466666554 7999998843
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=1.1e-06 Score=75.45 Aligned_cols=229 Identities=17% Similarity=0.115 Sum_probs=129.6
Q ss_pred CCCeEEEEEcccCccccccccceecccccceeeeeeeEEec-cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceE
Q 012064 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96 (471)
Q Consensus 18 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~ 96 (471)
++|+|..||..+|+.+-+ ..+. +....+ +. ..+++..+++++.++.+..||..+|+.+
T Consensus 1 ~~g~l~~~d~~tG~~~W~-------------------~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~ 59 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWS-------------------YDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVL 59 (238)
T ss_dssp -TSEEEEEETTTTEEEEE-------------------EECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEE
T ss_pred CCCEEEEEECCCCCEEEE-------------------EECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 478999999998987731 1111 122222 11 2235667777789999999999999998
Q ss_pred EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece-e-eeEEEEEEccCCCcEEEEEecCCe
Q 012064 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-Q-GRAHKLAIEPGSPHVFYTCGEDGL 174 (471)
Q Consensus 97 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~~~~~dg~ 174 (471)
.++.. .+.+...... ++..++.+..++.+..+|..+++..-....... . ...........+ ..++.+..++.
T Consensus 60 W~~~~--~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~ 133 (238)
T PF13360_consen 60 WRFDL--PGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGK 133 (238)
T ss_dssp EEEEC--SSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSE
T ss_pred EEeec--cccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCc
Confidence 88743 2222222222 455666666788999999888877654211110 0 011112222224 35777888999
Q ss_pred EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCC
Q 012064 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (471)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (471)
|..+|+++|+.+...................+..-....+ + .++.+..++.+..+|+.+++....
T Consensus 134 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~~g~~~~~d~~tg~~~w~------------- 198 (238)
T PF13360_consen 134 LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD-G-RVYVSSGDGRVVAVDLATGEKLWS------------- 198 (238)
T ss_dssp EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT-T-EEEEECCTSSEEEEETTTTEEEEE-------------
T ss_pred EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC-C-EEEEEcCCCeEEEEECCCCCEEEE-------------
Confidence 9999999999987776532211110000111122222223 4 566667677544449988762211
Q ss_pred cccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
.....+..+ ...++..|+..+ ++.+..||+.+++
T Consensus 199 ----~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 199 ----KPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ----ECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ----ecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 001112221 345566666665 7899999999874
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=6.1e-06 Score=76.53 Aligned_cols=279 Identities=10% Similarity=0.004 Sum_probs=157.4
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeE------EEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEe
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ------AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL 146 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 146 (471)
+..++.++.++.+.-+|.++|+.+.+........... +.-.|..++..++.++.+|.+..+|.++++..-....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 5577777888999999999999887763222111100 0001111456677788899999999988887654333
Q ss_pred eceeeeEEE-EEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 147 GKHQGRAHK-LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 147 ~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
.+ .+.+ .... ++ .++.++.++.+..+|.++++........... ... . ...+-... + ..++.++.+
T Consensus 149 ~~---~~~ssP~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~--~--~~~sP~v~-~--~~v~~~~~~ 214 (394)
T PRK11138 149 AG---EALSRPVVS-DG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPS-LTL--R--GESAPATA-F--GGAIVGGDN 214 (394)
T ss_pred CC---ceecCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecCCCCc-ccc--c--CCCCCEEE-C--CEEEEEcCC
Confidence 22 2211 1121 33 4667888999999999999988776532110 000 0 00011111 1 246667788
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC---CCCeEEEeeCCcEEEEecCCCCCCCCCCCCC
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~ 302 (471)
|.+..+|..+++.........+...... .....+.-+| ++..++...++.++.+|..+++......
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~--------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~--- 283 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEI--------DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE--- 283 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccch--------hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec---
Confidence 9999999988875443322211100000 0000111112 4444455557789999988764322100
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
+ +. ...+. .++..++.++.+|.++.+|..+|+.+-...
T Consensus 284 ---------------------------------~-~~-----~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 284 ---------------------------------Y-GS-----VNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred ---------------------------------C-CC-----ccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEccc
Confidence 0 00 11111 235567778889999999999987764332
Q ss_pred CCC-cceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 383 ADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 383 ~h~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
.-. ....+... .+.+|+.++.||.+++.|..+++..
T Consensus 322 ~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 322 DLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred ccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 111 11122222 2457778889999999999888763
No 309
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.82 E-value=5e-06 Score=69.95 Aligned_cols=221 Identities=14% Similarity=0.202 Sum_probs=120.5
Q ss_pred eEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE
Q 012064 54 YAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 132 (471)
.+.+.+-...+..++|+|+. .++++....+.|...+. +|+.+.++.-.-.+....+++.. ++.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence 35666767779999999975 56777778889988886 47887777433345678889987 7877777667899999
Q ss_pred EeccccCc-ceee-----Eee---ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC---CccceeeeecccCCcCcc
Q 012064 133 AQILERGG-VETK-----LLG---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNY 200 (471)
Q Consensus 133 wd~~~~~~-~~~~-----~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~ 200 (471)
+++..... .... .+. .++..+..++|+|.+..+ +.+-+.....++.++. ............... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L-~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~--~ 167 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRL-FVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD--K 167 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEE-EEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H--T
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEE-EEEeCCCChhhEEEccccCccceeeccccccccc--c
Confidence 98844322 1111 111 244568999999988554 5566666667776654 222211111111100 0
Q ss_pred eeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee
Q 012064 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
.....+.+++++|..+++++.+..+..|..+| ..++......+.... .-....-.+...++|.++|++.+++-
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~------~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF------HGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG------GG-SS---SEEEEEE-TT--EEEEET
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc------cCcccccCCccEEEECCCCCEEEEcC
Confidence 12335789999999888999999999999999 444433322221100 00001123467899999998777765
Q ss_pred CCcEEEE
Q 012064 281 DEFIYLF 287 (471)
Q Consensus 281 ~~~i~i~ 287 (471)
-+..++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555554
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.82 E-value=1e-05 Score=69.47 Aligned_cols=234 Identities=16% Similarity=0.126 Sum_probs=132.1
Q ss_pred CCeEEEEECCCCceEEEeecCC-CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 82 DRRVILWDWKTERVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
+|+|..||..+|+.+.+...+. .....+. ..+ ++..+++++.++.+..||..+++..-...+....... ....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEE--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeec
Confidence 6899999999999988873321 1122211 333 5667777788999999999888776554332221111 1222
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
++ .++.++.++.++.+|.++++............... . ......+. +..++.+..++.|..+|.++++...
T Consensus 76 ~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~--~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 76 GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV--R--SSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST--B----SEEEEE---TTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cc--ccccccceeeeEecccCCcceeeeecccccccccc--c--cccCceEe---cCEEEEEeccCcEEEEecCCCcEEE
Confidence 33 45667788899999999999887742211111100 0 11222222 3577778889999999999988654
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCcc
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
......+... .... ....+..-....++..+++..++.+..+|..+++.
T Consensus 147 ~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~-------------------------- 195 (238)
T PF13360_consen 147 KYPVGEPRGS----SPIS-SFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK-------------------------- 195 (238)
T ss_dssp EEESSTT-SS------EE-EETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE--------------------------
T ss_pred EeecCCCCCC----ccee-eecccccceEEECCEEEEEcCCCeEEEEECCCCCE--------------------------
Confidence 4332111000 0000 00112222233345444444466544448877521
Q ss_pred CCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeE
Q 012064 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~ 379 (471)
. ....... .... . ..++..|+.++.++.|..||+++|+.+-
T Consensus 196 ------------~--w~~~~~~--~~~~-~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 196 ------------L--WSKPISG--IYSL-P-SVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ------------E--EEECSS---ECEC-E-ECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ------------E--EEecCCC--ccCC-c-eeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 0 1111111 1221 2 4567788888799999999999998764
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.1e-07 Score=77.58 Aligned_cols=269 Identities=14% Similarity=0.143 Sum_probs=150.1
Q ss_pred EEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCc
Q 012064 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (471)
++..+-.+-+... ++.+|...|.+++|+|+ +..++..++.+..|+|.|+++...+.. +..+ ..+++++|.-+..+
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~-~~GLl~~asl~nkiki~dlet~~~vss--y~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPF-NEGLLGLASLGNKIKIMDLETSCVVSS--YIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCcc-ccceeeeeccCceEEEEecccceeeeh--eecc-CCceeeeeccCCcc
Confidence 4444444434433 45678889999999993 333788899999999999998877765 5555 78999999999889
Q ss_pred EEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE------cCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI------DPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
.++.|..+|.|.+||++..+........+. ...+|..++. .+. +.+++....+ +..|.+.....
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~-------t~~pv~~i~~~~~n~~f~~-gglLv~~lt~--l~f~ei~~s~~ 319 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANV-------TINPVHKIAPVQPNKIFTS-GGLLVFALTV--LQFYEIVFSAE 319 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhh-------ccCcceeecccCccccccc-cceEEeeehh--hhhhhhhcccc
Confidence 999999999999999997654322111111 1112333322 233 2344444433 55666543221
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe-EEEeeCC----cEEEE----ecCCCCCCCCCCCCCccccccc
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LVSYNDE----FIYLF----TQDMGLGPNPPPSSPVSTRSEA 309 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~----~i~i~----d~~~~~~~~~~~~~~~~~~~~~ 309 (471)
. .+.....+..+...++++.+-.+. |++...+ +++.. |-..+...
T Consensus 320 ~------------~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pV-------------- 373 (463)
T KOG1645|consen 320 C------------LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPV-------------- 373 (463)
T ss_pred C------------CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCcee--------------
Confidence 0 111122223455666666664444 4444322 11110 00000000
Q ss_pred cccCCCCCCccCCCCCCcccccCCeeeecCCc-eeEeeeeeeeCCCCcEEE-EeeCCCeEEEEEccCCeeeEEecCCCcc
Q 012064 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGELIRVIEADRHV 387 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~g~~l~-~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 387 (471)
......+.|... +..-....+-.++.++++ +|++...+.+||..+.+.++++.-. .+
T Consensus 374 --------------------c~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-ep 432 (463)
T KOG1645|consen 374 --------------------CGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EP 432 (463)
T ss_pred --------------------eeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cc
Confidence 000000001000 000000111145556665 4556689999999999999888644 67
Q ss_pred eEEEEEcCC-C-CEEEEeecCCcEEEecCCC
Q 012064 388 VNCIEPHPH-S-TVLASSGIESDIKILTPNA 416 (471)
Q Consensus 388 v~~~~~s~~-~-~~l~s~~~dg~i~iw~~~~ 416 (471)
|..++...- + .+|+.-. |..++|+..+.
T Consensus 433 v~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 433 VLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eeecceeecCCcchhhhee-cceEEEEecCC
Confidence 887776542 3 3666654 66788887654
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=9.7e-09 Score=96.51 Aligned_cols=204 Identities=12% Similarity=0.125 Sum_probs=141.4
Q ss_pred eeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC
Q 012064 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (471)
Q Consensus 49 ~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 128 (471)
.+++..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|...... ..|...|+.+.-+. ||..+++.+.-.
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~--dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSV--DGSTQLTSSSSS 1165 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccC--Ccceeeeecccc
Confidence 355777889999999999999999999999999999999999999987777 78999999998887 898887765533
Q ss_pred --eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 129 --QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 129 --~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
-..+|++.+-... ...+ ..-.++.|+.... .-+.|+......+||++++.....+-..... ....-
T Consensus 1166 ~PlsaLW~~~s~~~~-~Hsf----~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~------~~y~~ 1233 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGP-RHSF----DEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVT------SSYSN 1233 (1516)
T ss_pred CchHHHhccccccCc-cccc----cccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchh------hhhhc
Confidence 3678998652221 1111 2346778887653 3355555567899999999887664321111 11122
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (471)
++..|+|+ ..+++ .|| .+||.+..+.+..+ .... .-..-.|+|+|.-++..+ .|
T Consensus 1234 n~a~FsP~-D~LIl---ndG--vLWDvR~~~aIh~F---------------D~ft-~~~~G~FHP~g~eVIINS----EI 1287 (1516)
T KOG1832|consen 1234 NLAHFSPC-DTLIL---NDG--VLWDVRIPEAIHRF---------------DQFT-DYGGGGFHPSGNEVIINS----EI 1287 (1516)
T ss_pred cccccCCC-cceEe---eCc--eeeeeccHHHHhhh---------------hhhe-ecccccccCCCceEEeec----hh
Confidence 67889998 45554 565 48999976533221 1101 112335889988777654 58
Q ss_pred EecCCCC
Q 012064 287 FTQDMGL 293 (471)
Q Consensus 287 ~d~~~~~ 293 (471)
||+++-+
T Consensus 1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred hhhHHHH
Confidence 9988754
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=2.2e-05 Score=63.96 Aligned_cols=144 Identities=17% Similarity=0.063 Sum_probs=92.1
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
..+++.|+..+.+.--|..+|.+.- ..+- ..+|-+-+.- -|++++.|.+.|.+.+-+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~W--------------------e~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIW--------------------EAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEe--------------------ehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 4667888888888888888887663 1111 1222222221 477899999999999999
Q ss_pred CCCCceEEEeecCCCcceeE-EEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEE
Q 012064 90 WKTERVKLSFHSGHNDNVFQ-AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 168 (471)
.++|+....+... +.|.+ ....+ ++..+..++.|++.+..|..+...+.. .+...+...+-+..|.... ++.
T Consensus 80 ~~tGs~~w~f~~~--~~vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVyk--skcgG~~f~sP~i~~g~~s-ly~ 152 (354)
T KOG4649|consen 80 VKTGSQIWNFVIL--ETVKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYK--SKCGGGTFVSPVIAPGDGS-LYA 152 (354)
T ss_pred ecchhheeeeeeh--hhhccceEEcC--CCceEEEecCCCcEEEecccccceEEe--cccCCceeccceecCCCce-EEE
Confidence 9999877776322 22222 23345 899999999999999999988887765 2222223334455553323 455
Q ss_pred EecCCeEEEEeccCC
Q 012064 169 CGEDGLVQHFDLRTG 183 (471)
Q Consensus 169 ~~~dg~i~iwd~~~~ 183 (471)
+...|.+.--..+..
T Consensus 153 a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 153 AITAGAVLAVTKNPY 167 (354)
T ss_pred EeccceEEEEccCCC
Confidence 555555554444443
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=1.4e-05 Score=68.31 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=127.9
Q ss_pred EEEEEcC-CCCEEEEecCCC-eEEEEECCCCceEEEeecCCCccee-EEEEecCCCCeEEEEEeC-----CCeEEEEecc
Q 012064 65 NTVSFNT-DGDILISGSDDR-RVILWDWKTERVKLSFHSGHNDNVF-QAKIMPFTDDRSIVTCAA-----DGQVRHAQIL 136 (471)
Q Consensus 65 ~~~~~s~-~g~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~ 136 (471)
..++.+| .+..++.+-.-| ...+||..+++....+........+ .-.|+| ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEECc
Confidence 4567788 455666666555 4678999999987766322111111 357999 9999998644 4899999997
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe-----------------cCCeEEEEeccCCccceeeeecccCCcCc
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----------------EDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (471)
. .......+..|.-....+.+.||++.+++.-+ .+..+...|.++++.+......+..
T Consensus 86 ~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~---- 160 (305)
T PF07433_consen 86 R-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL---- 160 (305)
T ss_pred C-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc----
Confidence 2 22232336666656677889999965544321 2345666677777766654432211
Q ss_pred ceeeeeeEEEEEcCCCCceEEEEeCCCe-------EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC
Q 012064 200 YMTVVNLNAIAIDPRNANLFAVAGSDEY-------TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (471)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (471)
+...+..+++.++ +..++..-..|. +.+++.... .... ..+......-...+-+|+++++
T Consensus 161 --~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~--------~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 161 --HQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLL--------PAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred --cccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCCCc--ceec--------cCChHHHHhhCCceEEEEEeCC
Confidence 4557899999998 443333222221 233332221 0000 0111122333578999999999
Q ss_pred CCeEEEee--CCcEEEEecCCCC
Q 012064 273 SELLVSYN--DEFIYLFTQDMGL 293 (471)
Q Consensus 273 ~~~l~~~~--~~~i~i~d~~~~~ 293 (471)
+.+++..+ .+.+.+||..++.
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCC
Confidence 99888777 5589999998864
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=4.5e-08 Score=82.13 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=115.5
Q ss_pred EEcC--CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC---cce
Q 012064 68 SFNT--DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG---GVE 142 (471)
Q Consensus 68 ~~s~--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~ 142 (471)
+|+- .|-. ++.+.+..+-+-|+++|.. ..+ ..++.|.++.|.. .++.++.|..+|.|...|++... ...
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-ccc--ccchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 5543 2334 4455666788999988765 444 3677899999998 88999999999999999998762 112
Q ss_pred eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc---ceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
.. .--|...|+++......+..+++.+.+|.|++||++--++ +..+.. |.......-+-.+|. ...+
T Consensus 292 a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG--------HvN~~a~l~~~v~~e-eg~I 361 (425)
T KOG2695|consen 292 AQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG--------HVNLSAYLPAHVKEE-EGSI 361 (425)
T ss_pred eE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec--------ccccccccccccccc-cceE
Confidence 12 3348899999988773335688899999999999987776 444442 223333344455666 4577
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDF 244 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (471)
++++.|-..++|.++.+.+.....+
T Consensus 362 ~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEccCeeEEEEEecccCceeeccCC
Confidence 7799999999999999987766544
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.5e-07 Score=85.51 Aligned_cols=192 Identities=13% Similarity=0.146 Sum_probs=131.0
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
.+.++|++++ +++|+-|..+|.|++.+.. +.. ... ..|... .. +|.++++|+.||.+.|-.+.+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~-~~~s~~------~~--~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTN-FDHSSS------IL--EGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccc-cccccc------cc--CCceEEEecCCCcEEEeeccCCcc
Confidence 4667777775 6799999999999999965 443 222 245443 44 899999999999999999887776
Q ss_pred ceeeEeeceeeeEEEEEEccC----CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 141 VETKLLGKHQGRAHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
... .....++.+++++|+ ..+.+++||..| +.++.-+=-....... .+...++|.++.|. +
T Consensus 106 ~~~---~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~--------l~~~eG~I~~i~W~---g 170 (846)
T KOG2066|consen 106 ITQ---YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV--------LSEGEGPIHSIKWR---G 170 (846)
T ss_pred cee---EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee--------eecCccceEEEEec---C
Confidence 553 234578999999998 224689999888 7776532111111111 11256689999997 5
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
+++|-+..+| |++||...++......... ........-..+.|.++. .|+.|=.++|++..++.
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~---------~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPS---------QSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIKK 234 (846)
T ss_pred cEEEEecCCC-cEEEeccccceeeccCCCC---------CCCCcccCCCceEecCCC-eEEEecCCeEEEEEEec
Confidence 6898888776 9999999988665543322 111112223457787765 55666667888888873
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=2.3e-05 Score=77.26 Aligned_cols=246 Identities=13% Similarity=0.104 Sum_probs=140.1
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
..+.|.++.|..++..++.+..+|.|.+-|.++... .+...-...|.+++|+| |++.++..+..+++.+-. .+-.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~--Dee~l~liT~~~tll~mT-~~f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSP--DEELLALITGRQTLLFMT-KDFE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecC--CCcEEEEEeCCcEEEEEe-cccc
Confidence 347899999999999888899999999998876654 22234567899999999 999999998887776543 2223
Q ss_pred cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
++..+.+. ..-.+.+ -++.++....=.-+.-..++....-...+....+...-...=..+.|--| |.++
T Consensus 142 ~i~E~~L~--------~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~f 210 (1265)
T KOG1920|consen 142 PIAEKPLD--------ADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYF 210 (1265)
T ss_pred chhccccc--------ccccccc--ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEE
Confidence 33222121 1111222 12333332211111111111100000000000000001112256889888 6788
Q ss_pred EEE-----eCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee----CCcEEEEecC
Q 012064 220 AVA-----GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQD 290 (471)
Q Consensus 220 ~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~d~~ 290 (471)
++. .....|++||.+ +.+... .....+.-.+++|-|.|..+++.. ++.|.+|..+
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~---------------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNST---------------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcc---------------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 873 233789999987 443211 111123346799999999998754 4468888865
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE---eeCCCeE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS---GSDCGRI 367 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~---g~~dg~v 367 (471)
.-..- .....+..... .+..++| +.++..||. ..+...|
T Consensus 275 GL~hg-----------------------------------~f~l~~p~de~--~ve~L~W-ns~sdiLAv~~~~~e~~~v 316 (1265)
T KOG1920|consen 275 GLRHG-----------------------------------EFVLPFPLDEK--EVEELAW-NSNSDILAVVTSNLENSLV 316 (1265)
T ss_pred Ccccc-----------------------------------ccccCCccccc--chheeee-cCCCCceeeeecccccceE
Confidence 42211 01111111111 2788998 999999987 5555669
Q ss_pred EEEEccCC
Q 012064 368 FIWKKKGG 375 (471)
Q Consensus 368 ~iwd~~~~ 375 (471)
++|-+.+.
T Consensus 317 ~lwt~~Ny 324 (1265)
T KOG1920|consen 317 QLWTTGNY 324 (1265)
T ss_pred EEEEecCe
Confidence 99998764
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.3e-06 Score=75.25 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=139.1
Q ss_pred CCCCCCCCCCc-EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC-CEEEE
Q 012064 1 MDDASNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILIS 78 (471)
Q Consensus 1 ~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s 78 (471)
|.+++|+|.+. ++..++.+.+|+|.|+++.-.+ ..+..| ..+++++|.-|. .++..
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---------------------ssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---------------------SSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceee---------------------eheecc-CCceeeeeccCCcceeEE
Confidence 45788999876 7899999999999999977666 456666 889999998876 56667
Q ss_pred ecCCCeEEEEECCCCceEEEeecC--CCcceeEEEEecC----CCCeEEEEEeCCCeEEEEeccccCcceeeEee-ceee
Q 012064 79 GSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPF----TDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQG 151 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 151 (471)
|..+|.|.+||+...+.....+.+ ...+|..++..+. ..+..++....+ +..|++.-...-....+. +..+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 778999999999765432211111 2334444443330 134455554443 566766433221111111 2345
Q ss_pred eEEEEEEccCCCcEEEEEecCC------eEEE-EeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDG------LVQH-FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg------~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
...++...+-.++++++.-.+. .+-. -|-.+|..+..-+......... ....-..+.-.+++..++.++..
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~--kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQT--KLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccc--ccccccceeccccccEEEEecCC
Confidence 5666667665556666544321 0100 1122222221111000000000 00001122234554444556667
Q ss_pred CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC--CCCeEEEeeCCcEEEEecC
Q 012064 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYNDEFIYLFTQD 290 (471)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~i~i~d~~ 290 (471)
.+.+.+||..+.+..+.+.+..| |..++... .+.+|+.-.++.++||..+
T Consensus 410 tn~lil~D~~s~evvQ~l~~~ep----------------v~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALSEP----------------VLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cceeEEeccchhheeeecccCcc----------------eeecceeecCCcchhhheecceEEEEecC
Confidence 78899999999987776655433 44444332 3458888899998888754
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.4e-06 Score=77.59 Aligned_cols=219 Identities=13% Similarity=0.129 Sum_probs=130.8
Q ss_pred EEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC-----eEEEEeccCCcc
Q 012064 111 KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAA 185 (471)
Q Consensus 111 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 185 (471)
+|++ .+..++.|+.+|.|.+.+- +- .....+..+...+...-+.-++..++++.+.|+ .+++||++..+.
T Consensus 30 c~~s--~~~~vvigt~~G~V~~Ln~--s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSS--STGSVVIGTADGRVVILNS--SF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcC--CCceEEEeeccccEEEecc--cc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3677 8899999999998888763 21 111225555555333334444445777776664 599999875422
Q ss_pred ce---eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc
Q 012064 186 TE---LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (471)
Q Consensus 186 ~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (471)
.. .+..+............++.+++.+.+ -..+|+|-.+|.|..+.-.-.+-.. ...........
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrg-----------sr~~~~~~~~~ 172 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRG-----------SRQDYSHRGKE 172 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccc-----------cceeeeccCCC
Confidence 11 110011111111113557889999988 6899999999999988532111000 01122334478
Q ss_pred ceEEEEEcCCCCe-EEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc
Q 012064 263 GITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (471)
Q Consensus 263 ~i~~~~~~~~~~~-l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (471)
+|+++++..+++. +..+....|.+|.+... .+....+..|..
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr-------------------------------------~p~~~~ld~~G~ 215 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGR-------------------------------------TPSLKVLDNNGI 215 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCC-------------------------------------CcceeeeccCCc
Confidence 8999999999887 55666788999998742 111233444443
Q ss_pred eeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec-CCCcc
Q 012064 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHV 387 (471)
Q Consensus 342 ~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~-~h~~~ 387 (471)
. ..|..+ ++....+++++ +..+.+|+.....+-..+. +|...
T Consensus 216 ~--lnCss~-~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 216 S--LNCSSF-SDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred c--ceeeec-CCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence 3 777777 54444344444 3479999987655556665 55533
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.2e-06 Score=80.82 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=121.1
Q ss_pred CCCCCCCcEEEEec----CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 4 ASNNNNNKRARTSV----DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 4 ~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
.+++|..+++|+++ +.|++.||- ++|+.-.. -+.. -.+++++|+|..-.|+.|
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------------Vt~P---~hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------------VTYP---VHATSLCWHPEEFVLAQG 77 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------------cccc---eehhhhccChHHHHHhhc
Confidence 56889999988876 568888886 44663210 1122 225669999999899999
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee--eeE--EE
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ--GRA--HK 155 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v--~~ 155 (471)
-.-|.+.+|...+.+. .+....|..+|..+.|+| +|..++++..-|.+.+|.......++...+..|. ..+ .+
T Consensus 78 we~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~c 154 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWC 154 (1416)
T ss_pred cccceeEEEecCCcee-eeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEE
Confidence 9999999999776554 556578999999999999 9999999999999999998755554443333343 222 34
Q ss_pred EEEccCCCcE-----EEEEecCCeEE-EEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEE
Q 012064 156 LAIEPGSPHV-----FYTCGEDGLVQ-HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (471)
Q Consensus 156 ~~~~~~~~~~-----l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (471)
...++++... .++.+.+..+- .++.+......... + .=.|+ +..++.++.+|+|+
T Consensus 155 fRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-----------k-------sgv~~-g~~F~~~~~~GtVy 215 (1416)
T KOG3617|consen 155 FRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-----------K-------SGVPK-GTEFLFAGKSGTVY 215 (1416)
T ss_pred EecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-----------c-------cCCCC-CcEEEEEcCCceEE
Confidence 4445553211 23334443332 22222111110000 0 11355 67888889999998
Q ss_pred EEEcCCC
Q 012064 230 LYDIRKY 236 (471)
Q Consensus 230 i~d~~~~ 236 (471)
-.|-...
T Consensus 216 yvdq~g~ 222 (1416)
T KOG3617|consen 216 YVDQNGR 222 (1416)
T ss_pred EEcCCCc
Confidence 8885543
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.65 E-value=4.4e-05 Score=69.47 Aligned_cols=305 Identities=13% Similarity=0.089 Sum_probs=153.9
Q ss_pred CCCCcEEEEe---------cCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE
Q 012064 7 NNNNKRARTS---------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (471)
Q Consensus 7 ~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 77 (471)
|||+++++.. +..+.+.|+|+++++.. .+......+....|||+|+.+|
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~----------------------~l~~~~~~~~~~~~sP~g~~~~ 58 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT----------------------PLTPPPPKLQDAKWSPDGKYIA 58 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE----------------------ESS-EETTBSEEEE-SSSTEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE----------------------ECcCCccccccceeecCCCeeE
Confidence 5788887762 33578899999987655 2222267788999999999999
Q ss_pred EecCCCeEEEEECCCCceEEEeecCC----------------CcceeEEEEecCCCCeEEEEEeCC-CeEEEEeccccCc
Q 012064 78 SGSDDRRVILWDWKTERVKLSFHSGH----------------NDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGG 140 (471)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~ 140 (471)
... ++.|.+++..+++..+-...+- -+.-..+-|+| |+++|+....| ..++.+.+.....
T Consensus 59 ~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 59 FVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp EEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred EEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEEEECCcCCceEEeeccCC
Confidence 875 4689999988775432221220 11224678999 99999877654 3344443321111
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (471)
... ---.+..+.+-.-|... . .-.+.++|+++++....-...... .....+..+.|.+++..+++
T Consensus 136 ~~~-----~yp~~~~~~YPk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~-----~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 136 PDS-----QYPEVESIRYPKAGDPN-P----RVSLFVVDLASGKTTELDPPNSLN-----PQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp STE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHH-----TSSEEEEEEEEEETTEEEEE
T ss_pred ccc-----cCCcccccccCCCCCcC-C----ceEEEEEECCCCcEEEeeeccccC-----CCccCcccceecCCCcEEEE
Confidence 100 00123344443222211 1 114777899888764221110000 03446889999998431333
Q ss_pred E-EeCCC---eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc-CCCCeEEEee--CC--cEEEEecCC
Q 012064 221 V-AGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN--DE--FIYLFTQDM 291 (471)
Q Consensus 221 ~-~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~--~~--~i~i~d~~~ 291 (471)
. ...+. .+.++|..+++..... ......--.......+. +++..++-.+ +| .+++++...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~-----------~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVL-----------EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEE-----------EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEE-----------EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 2 22222 3666777654321100 00000000111234443 6665444333 45 477777765
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE-EeeCC----Ce
Q 012064 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDC----GR 366 (471)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~-~g~~d----g~ 366 (471)
+. ...+....- .|..+..++++++.|+ ++..+ ..
T Consensus 270 ~~---------------------------------------~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 270 GK---------------------------------------PRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SE---------------------------------------EEESS-SSS---EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cc---------------------------------------eeccccCce--eecccceEcCCCCEEEEEecCCCCCceE
Confidence 31 122222222 2545444477776554 45442 35
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEe
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 403 (471)
|+.-++..+..+..+....+.-..+.|||++++++-.
T Consensus 309 lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 309 LYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 6666666234445555444333699999999977644
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.65 E-value=4.6e-05 Score=72.48 Aligned_cols=212 Identities=14% Similarity=0.106 Sum_probs=112.5
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEE--EEEEcCCCCEEEEecCCCeEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN--TVSFNTDGDILISGSDDRRVIL 87 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~--~~~~s~~g~~l~s~~~d~~i~i 87 (471)
+..+..++.++.+.-.|.++|+.+-+.-.. .....+...+. .+... ++..++.++.++.|.-
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~---------------~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~A 124 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPK---------------LPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVA 124 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCC---------------CCccccccccccCCcEEc-cCCeEEEecCCCeEEE
Confidence 455677777899999999888876311000 00000000000 01111 2257777888999999
Q ss_pred EECCCCceEEEeecCCCc-ceeEEEEecCCCCeEEEEEe---------CCCeEEEEeccccCcceeeEeecee-------
Q 012064 88 WDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCA---------ADGQVRHAQILERGGVETKLLGKHQ------- 150 (471)
Q Consensus 88 wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~------- 150 (471)
+|.++|+.+.++...... .-..+.-+|.-.+..++.++ .+|.+..+|..+++..-........
T Consensus 125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 999999998887322110 00111112211223444443 3578888888887765442221110
Q ss_pred -----------eeE-EEEEEccCCCcEEEEEecCC------------------eEEEEeccCCccceeeeecccCCc--C
Q 012064 151 -----------GRA-HKLAIEPGSPHVFYTCGEDG------------------LVQHFDLRTGAATELFTCRPIDDR--R 198 (471)
Q Consensus 151 -----------~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~--~ 198 (471)
..+ ...++.+.+ .+++.++.++ .+.-+|.++++....++....... .
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD 283 (488)
T ss_pred CCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence 001 123444444 3566666554 799999999999887754321100 0
Q ss_pred cceeeeeeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCCccCC
Q 012064 199 NYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
.. ....+..+. .-++. ..++.++.+|.+..+|.++++..-
T Consensus 284 ~~-s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 284 GP-NQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred cC-CCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 00 000111111 01111 267788899999999999987554
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=7.8e-07 Score=84.39 Aligned_cols=185 Identities=18% Similarity=0.265 Sum_probs=134.8
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
+..++.|+....+..+|+.+.+..+.. .-..+.|.-++. +++++.+|...|+|.+-|..+.+.+.. +..|.+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht--~~aHs~s 219 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHT--FDAHSGS 219 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeee--eeccccc
Confidence 456777777778888999887775554 223334666665 779999999999999999988887766 8999999
Q ss_pred EEEEEEccCCCcEEEEEec---------CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 153 AHKLAIEPGSPHVFYTCGE---------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
|.++... | ++|+++|. |..|++||+|..+.+..+.... ...-+.|+|.-...+++++
T Consensus 220 iSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-----------~P~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 220 ISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-----------GPQFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCccccc-----------CchhhhhcccccceEEEEe
Confidence 9877664 5 46788765 5678999999887766555322 2355678887677899999
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEec
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~ 289 (471)
..|...+-|..+... |. .-..........+..+.+++++..++.+. +|.|.+|.-
T Consensus 286 ~sGq~q~vd~~~lsN--------P~---~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSN--------PP---AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccceeeccccccCC--------Cc---cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 999999988443220 00 00112222345599999999999999998 779999983
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=1.2e-06 Score=83.25 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=134.7
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
++..++.|+-...+..+|+.+++.. +...-..+.|+-++. ++++|.+|...|+|.+-
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---------------------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---------------------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLR 202 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---------------------eeeeccCCceEEEEe--cCcEEEeecccceEEee
Confidence 3445666666667777787765554 333333444655554 57899999999999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC---------CCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
|..+.+.+.++ ..|.+.|.++.. .|+.|++|+. |.-|++||++..+.+.. +.-+.++ .-+.|+
T Consensus 203 D~~s~~~iht~-~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~P-~flrf~ 274 (1118)
T KOG1275|consen 203 DPNSFETIHTF-DAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYGP-QFLRFH 274 (1118)
T ss_pred cCCcCceeeee-eccccceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccCc-hhhhhc
Confidence 99999999998 899999988766 6889999875 44688999988776654 3323333 557888
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCc-c-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGA-A-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
|.-...+++++..|...+-|..+-. + ...+...+ ....+..+++++. +..++.|..+|.|.+|.-+
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p--------~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP--------NGSGISAFDISSN-GDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEcc--------CCCcceeEEecCC-CceEEEecccCcEeeecCC
Confidence 8877788999999999999843221 1 11221111 3335889999998 7899999999999999833
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=6.4e-06 Score=76.32 Aligned_cols=153 Identities=10% Similarity=0.103 Sum_probs=108.3
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeE
Q 012064 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (471)
Q Consensus 6 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i 85 (471)
+..++++++.|++-|.+++|+..+|+... ....+..+.+..+..|++..++|.|+..|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V 100 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------LKNEGATGITCVRSVSSVEYLVAAGTASGRV 100 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhc--------------------ccccCccceEEEEEecchhHhhhhhcCCceE
Confidence 45678899999999999999999877663 3333456777788889999999999999999
Q ss_pred EEEECCCCce-----EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc--ceeeEeeceeeeEEEEEE
Q 012064 86 ILWDWKTERV-----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 86 ~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~ 158 (471)
.++.+..+.+ +....+.|...|++++|++ |+..+++|...|.|..-.+..... -....+-...+.|-.+..
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 9998876443 1222345788999999999 999999999999999988876211 011123335567777776
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCc
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGA 184 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (471)
... ++|++.... -.+++++.+.
T Consensus 179 ~q~--~LLVStl~r--~~Lc~tE~et 200 (726)
T KOG3621|consen 179 LQS--YLLVSTLTR--CILCQTEAET 200 (726)
T ss_pred ccc--eehHhhhhh--hheeecchhH
Confidence 642 344443332 3345555443
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.60 E-value=1.3e-05 Score=74.96 Aligned_cols=299 Identities=10% Similarity=-0.008 Sum_probs=161.7
Q ss_pred EEEecCCCeEEEEEcccCcccccc--ccc-eecc---cccceeeeeee---EEe---ccccccEEEEEEcCCCCEEEEec
Q 012064 13 ARTSVDKALVDVWLRELGQLSTRN--FAL-RRRA---SEDLVLRLGIY---AKL---DKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 13 l~~~~~dg~i~iw~~~~~~~~~~~--~~~-~~~~---~~~~~~~~~~~---~~l---~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
+.+|+..|.++|+-+.+++.+.+. |.+ ...+ .++...-+... ..+ ..|.-.+..-.=..||++|..-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 778999999999999998887652 211 0000 00000000000 000 01111111111112678887766
Q ss_pred C-CCeEEEEECCCCceEEEeecCCCcceeEEEEe--cCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 81 D-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIM--PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 81 ~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
. +..|-.-+++..++..-+.......+..++|. | +..|++.+++.. +=
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p--~t~yv~~~~e~~---------------------------~P 199 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP--RTGYVFCNGEFR---------------------------IP 199 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccC--CccEEEeCcccc---------------------------cc
Confidence 4 45565566665554333333445566666665 5 666766655321 11
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC---CC-eEEEEEc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---DE-YTRLYDI 233 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg-~i~i~d~ 233 (471)
+.|+|..+....-..+.+.+.|.++.+....+... .....+.++|+ +.++++.+. .| .+..-+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-----------gnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a 267 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-----------GNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMA 267 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-----------CCcccceECCC-CCEEEEeccCcccCcceeeecc
Confidence 23344222222333456677788877666555532 23467788998 456655542 22 2222222
Q ss_pred CCCccCCCCCCCCCCCcCCCCcccCCCccceEEE------EEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccc
Q 012064 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL------AFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 307 (471)
... ..+..+ ++.++|++... .+++|.+.|..+.....
T Consensus 268 ~e~-------------------------d~~vvfni~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~----------- 310 (635)
T PRK02888 268 AER-------------------------DWVVVFNIARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAG----------- 310 (635)
T ss_pred ccC-------------------------ceEEEEchHHHHHhhhCCCEEEE-CCCEEEEEECCccccCC-----------
Confidence 111 111111 23457776554 45679999977510000
Q ss_pred cccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-CCCeEEEEEccCCee---------
Q 012064 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL--------- 377 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~~~~~~--------- 377 (471)
......+.-... ...+.+ +|||+++++++ .+.+|.|.|+.+.+.
T Consensus 311 ----------------------~~v~~yIPVGKs---PHGV~v-SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 311 ----------------------SALTRYVPVPKN---PHGVNT-SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred ----------------------cceEEEEECCCC---ccceEE-CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 111222222222 567787 99999988665 478999999977542
Q ss_pred ---eEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 378 ---IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 378 ---~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+.+..- .......+|.++|+...|.-.|..|..|++..
T Consensus 365 ~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333322 23456789999999888888899999999876
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=2.6e-06 Score=73.48 Aligned_cols=280 Identities=10% Similarity=0.074 Sum_probs=154.4
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe----------CCCeEEEEeccccCcceeeEeece-ee
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGGVETKLLGKH-QG 151 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~~ 151 (471)
+++.++|.++++.+-.+..+..+ .+..+| +++.++++. ..-.|.+||..+-.......++.- ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~---~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG---NVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---EEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecccCC---ceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 47999999999987777555443 356789 999888753 234689999988766554444421 11
Q ss_pred ----eEEEEEEccCCCcEEEEE--ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 152 ----RAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 152 ----~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
....+.++.+++. ++.. +--..|.+.|+..++.+..+... -|...-|.++..|.+-+.|
T Consensus 92 ~~~~~~~~~~ls~dgk~-~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--------------GC~~iyP~~~~~F~~lC~D 156 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKF-LYVQNFTPATSVTVVDLAAKKVVGEIDTP--------------GCWLIYPSGNRGFSMLCGD 156 (342)
T ss_dssp -BS--GGGEEE-TTSSE-EEEEEESSSEEEEEEETTTTEEEEEEEGT--------------SEEEEEEEETTEEEEEETT
T ss_pred eecccccceEEccCCcE-EEEEccCCCCeEEEEECCCCceeeeecCC--------------CEEEEEecCCCceEEEecC
Confidence 1234577888854 4433 33456889999988887766532 1222234434568888899
Q ss_pred CeEEEEEcCCC-ccCCCCCCCCCCCcCCCCcccCCCccc-eEEEEEcCC-CCeEEEeeCCcEEEEecCCCCCCCCCCCCC
Q 012064 226 EYTRLYDIRKY-KWDGSTDFGQPADYFCPPNLIGDEQVG-ITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 226 g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~-~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~ 302 (471)
|.+.-..+... +.... ....+.....+ +..-++... +.++...-+|.|+-.|+.........+
T Consensus 157 Gsl~~v~Ld~~Gk~~~~-----------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~--- 222 (342)
T PF06433_consen 157 GSLLTVTLDADGKEAQK-----------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP--- 222 (342)
T ss_dssp SCEEEEEETSTSSEEEE-----------EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE---
T ss_pred CceEEEEECCCCCEeEe-----------eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc---
Confidence 99998888743 22110 00111111111 222333333 345555557888888776532100000
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce--eEeeeeeeeCCCCcEEEEe---eCCC-------eEEEE
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC--VTVKGVNFFGPKCEYVVSG---SDCG-------RIFIW 370 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~s~~g~~l~~g---~~dg-------~v~iw 370 (471)
......-.....+ ..-.-+++ ++..+.|+.- +.+| .|.++
T Consensus 223 ---------------------------~~~~t~~e~~~~WrPGG~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 223 ---------------------------WSLLTDAEKADGWRPGGWQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp ---------------------------EESS-HHHHHTTEEE-SSS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred ---------------------------ccccCccccccCcCCcceeeeee-ccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 0000000000000 01223444 4433333321 1122 58999
Q ss_pred EccCCeeeEEecCCCcceEEEEEcCCCC-EEEEe-ecCCcEEEecCCCCCCcccCcc
Q 012064 371 KKKGGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRATLPTN 425 (471)
Q Consensus 371 d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~~~~~~~ 425 (471)
|+.+++.+.++.. ..++.+++.+.|.+ +|++. ..++.+.+||..+++.....+.
T Consensus 275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999999998874 34688999998876 66554 4579999999999887554433
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.58 E-value=0.0004 Score=61.56 Aligned_cols=276 Identities=16% Similarity=0.183 Sum_probs=127.9
Q ss_pred EEEcCCCCEEEEecC-C--CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 67 VSFNTDGDILISGSD-D--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 67 ~~~s~~g~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
=+|.+||+.|+.++. | ..+.+-|+.+++..+-. .+.........++| +++.++-......++-.|+.+.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSP--DDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-T--TSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEec--CCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 356789976665544 4 46777788888764333 33223344566778 788877665566888888888765433
Q ss_pred eEeeceeeeEEEEEE--ccCCCcEEEEEec-----------------------CCeEEEEeccCCccceeeeecccCCcC
Q 012064 144 KLLGKHQGRAHKLAI--EPGSPHVFYTCGE-----------------------DGLVQHFDLRTGAATELFTCRPIDDRR 198 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~--~~~~~~~l~~~~~-----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (471)
+......+-...| +.++ .. +++.. ...|.-.|+++++....+.
T Consensus 118 --y~~p~~~~g~gt~v~n~d~-t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-------- 185 (386)
T PF14583_consen 118 --YEVPDDWKGYGTWVANSDC-TK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-------- 185 (386)
T ss_dssp --EE--TTEEEEEEEEE-TTS-SE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--------
T ss_pred --EECCcccccccceeeCCCc-cE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--------
Confidence 3333333433444 3444 33 32211 2456667788877665555
Q ss_pred cceeeeeeEEEEEcCCCCceEEEEeCC---C-eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC
Q 012064 199 NYMTVVNLNAIAIDPRNANLFAVAGSD---E-YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (471)
....+..+.|+|.++.+|+-|-+. . .-|+|-+++..-.. .+.... .....+..=-|.|||.
T Consensus 186 ---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-----------~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 186 ---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-----------KKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp ---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------EESS----TTEEEEEEEE-TTSS
T ss_pred ---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-----------eeeecC-CCCcccccccccCCCC
Confidence 444678889999877777776532 1 13566655432100 001101 1123344556899998
Q ss_pred eEEEee---CC---cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeee
Q 012064 275 LLVSYN---DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348 (471)
Q Consensus 275 ~l~~~~---~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (471)
.|..-+ .+ .|.-+|..++. .. ..... . . ....
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~------------------------------------~~--~~~~~-p-~--~~H~ 288 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGE------------------------------------RR--RLMEM-P-W--CSHF 288 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--------------------------------------EE--EEEEE---S--EEEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCC------------------------------------ce--EEEeC-C-c--eeee
Confidence 665422 22 25555655431 00 11111 0 1 2222
Q ss_pred eeeCCCCcEEEEeeCC----------------CeEEEEEccCCeeeEE---------ecCCCc-ceEEEEEcCCCCEEE-
Q 012064 349 NFFGPKCEYVVSGSDC----------------GRIFIWKKKGGELIRV---------IEADRH-VVNCIEPHPHSTVLA- 401 (471)
Q Consensus 349 ~~~s~~g~~l~~g~~d----------------g~v~iwd~~~~~~~~~---------~~~h~~-~v~~~~~s~~~~~l~- 401 (471)
.. ++||++++-=+.| --|++++++.++.... +.++.. .=-...|+||+++++
T Consensus 289 ~s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF 367 (386)
T PF14583_consen 289 MS-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLF 367 (386)
T ss_dssp EE--TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEE
T ss_pred EE-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEE
Confidence 22 7888887642222 1567788877654321 122211 135689999999654
Q ss_pred EeecCCcEEEecCC
Q 012064 402 SSGIESDIKILTPN 415 (471)
Q Consensus 402 s~~~dg~i~iw~~~ 415 (471)
++...|...||-++
T Consensus 368 ~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 368 RSDMEGPPAVYLVE 381 (386)
T ss_dssp EE-TTSS-EEEEEE
T ss_pred ECCCCCCccEEEEe
Confidence 55567777766543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3e-05 Score=73.69 Aligned_cols=198 Identities=14% Similarity=0.220 Sum_probs=127.0
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcc-eeEEEEecCCCCeEEEEEeCCC-----eEEEEecc
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-VFQAKIMPFTDDRSIVTCAADG-----QVRHAQIL 136 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~ 136 (471)
.|.| |++.+..+|.|+.+|.|.+.+- .-+.+..+ ..+... |..+.... +..+|++.+.|+ .+++|+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEeccc
Confidence 4544 5788889999999998888773 23333455 556655 44443332 346888887765 48999987
Q ss_pred ccCcce-ee-----Eeec-----eeeeEEEEEEccCCCcEEEEEecCCeEEEEecc---CCccceeeeecccCCcCccee
Q 012064 137 ERGGVE-TK-----LLGK-----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 137 ~~~~~~-~~-----~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~ 202 (471)
..+... .. .... ...++.+++++.+- ..++.|-.+|.|..+.-. .......+ .+..
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~---------~~~~ 170 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDY---------SHRG 170 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceee---------eccC
Confidence 542211 11 1111 34678899999886 578999999999988521 11111111 1125
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (471)
..+|+.+++..++...+.+++. ..|.+|.+.... ........+.....|.++++...-+++++..
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~--------------p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATT-EQVMLYSLSGRT--------------PSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred CCCceeeEEecCCceeEEEEec-ceeEEEEecCCC--------------cceeeeccCCccceeeecCCCCccEEEecCc
Confidence 5689999999885442333333 468999987432 0122345566778888998877668888888
Q ss_pred cEEEEecCC
Q 012064 283 FIYLFTQDM 291 (471)
Q Consensus 283 ~i~i~d~~~ 291 (471)
.+++|+...
T Consensus 236 ~l~fY~sd~ 244 (933)
T KOG2114|consen 236 FLYFYDSDG 244 (933)
T ss_pred eEEEEcCCC
Confidence 899999875
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=8.3e-08 Score=90.47 Aligned_cols=218 Identities=12% Similarity=0.138 Sum_probs=141.3
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC-eEEEEe
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFD 179 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd 179 (471)
..|....+|++|+. +.+.|+.|+..|.|+++++.++..... ..+|...|+-+.-+.+|..++.+++... -..+|+
T Consensus 1098 rd~~~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hccccceeeEEeec--CCceEEeeeccceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 56888999999999 999999999999999999999887765 8899999999999999975555555544 567898
Q ss_pred ccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccC
Q 012064 180 LRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (471)
Q Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (471)
+..- .....+. .-.++.|+.. ...-+.|+......+||+.+......+-. . ..
T Consensus 1174 ~~s~~~~~Hsf~--------------ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt---------~-~~- 1227 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD--------------EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLT---------D-TV- 1227 (1516)
T ss_pred cccccCcccccc--------------ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcC---------c-ch-
Confidence 8652 2222222 3467888876 34445566666789999998764322110 0 00
Q ss_pred CCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec
Q 012064 259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (471)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (471)
..+-.-++..|+|+..++.- + -.+||++... .++.|..
T Consensus 1228 ~~~y~~n~a~FsP~D~LIln--d--GvLWDvR~~~--------------------------------------aIh~FD~ 1265 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILN--D--GVLWDVRIPE--------------------------------------AIHRFDQ 1265 (1516)
T ss_pred hhhhhccccccCCCcceEee--C--ceeeeeccHH--------------------------------------HHhhhhh
Confidence 11112267789998877652 2 2578887632 2222222
Q ss_pred CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEE
Q 012064 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (471)
Q Consensus 339 ~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (471)
... -..-.| +|.|.-++.-++ |||+.+-++++....-. -..+.|+..|..++
T Consensus 1266 ft~---~~~G~F-HP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1266 FTD---YGGGGF-HPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred hee---cccccc-cCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccCccchh
Confidence 111 111124 899998887764 89998877665443222 23455666665433
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.50 E-value=5.8e-05 Score=68.67 Aligned_cols=289 Identities=13% Similarity=0.073 Sum_probs=141.1
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc---C
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER---G 139 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~ 139 (471)
.|+++.|+++..-|+.|...|.|.||.+...+.-.. .....-....+.++. ..++.-.+-|+... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCccccccc--------ccCCCcceEEehhhCCcc
Confidence 588999999988999999999999998765443210 011111222222210 01112223333321 1
Q ss_pred ----cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc---
Q 012064 140 ----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID--- 212 (471)
Q Consensus 140 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 212 (471)
......+....++|++++.+.-| +++.|..+|.+.+.|+|....+..-...+. .........++++.|.
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~--~~~~~~~~~vt~ieF~vm~ 147 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES--FLSKSSSSYVTSIEFSVMT 147 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE
T ss_pred cccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc--ccccccccCeeEEEEEEEe
Confidence 11222244557899999999777 678999999999999998877766443330 0111133456677775
Q ss_pred --CC--CCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEE-EcCC--------------
Q 012064 213 --PR--NANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA-FSDQ-------------- 272 (471)
Q Consensus 213 --p~--~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~-------------- 272 (471)
.| ..-++++|+..|.+.+|.+.- ........ .......+.++|..+. ++.+
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~---------~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQ---------FAGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEE---------EEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEE---------EeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 22 124788999999999998752 11000000 0001112234444333 2211
Q ss_pred -------CCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEe
Q 012064 273 -------SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (471)
Q Consensus 273 -------~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (471)
..+++.+++..++++...+.+ ...+.. ......
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k--------------------------------------~~~K~~--~~~~~~ 258 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSK--------------------------------------GAHKSF--DDPFLC 258 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT-----------------------------------------EEEEE---SS-EEE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCc--------------------------------------ccceee--cccccc
Confidence 126667777788888776532 111111 111112
Q ss_pred eeeeee----CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCC----cceEEEEEcCCCCEEEEeecC--CcEEEecCC
Q 012064 346 KGVNFF----GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR----HVVNCIEPHPHSTVLASSGIE--SDIKILTPN 415 (471)
Q Consensus 346 ~~~~~~----s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~d--g~i~iw~~~ 415 (471)
..+.+. ...+..|++-..+|.|++|.+...+.+..++-+. ..+....++++|..++-.+.. ..+.+|.-.
T Consensus 259 ~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~ 338 (395)
T PF08596_consen 259 SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGEG 338 (395)
T ss_dssp EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES--
T ss_pred ceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEccC
Confidence 233331 2356678888899999999999888887766532 345667788999977655433 234455443
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=7e-05 Score=74.02 Aligned_cols=209 Identities=11% Similarity=0.123 Sum_probs=127.3
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
+.|.++.|..+. +-++.+...|.|.+-|.++......-. -...|.+++|+|| +..++..+..+++.+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~-----------vd~GI~aaswS~D-ee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGN-----------VDNGISAASWSPD-EELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeee-----------ccCceEEEeecCC-CcEEEEEeCCcEEEE
Confidence 579999999888 457888889999999888765433222 3347999999999 688888888777765
Q ss_pred EEcCCCccCCCC---------------CCCCCCCcCC-------------CCcccC--CCccceEEEEEcCCCCeEEEee
Q 012064 231 YDIRKYKWDGST---------------DFGQPADYFC-------------PPNLIG--DEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 231 ~d~~~~~~~~~~---------------~~~~~~~~~~-------------~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
-+- +...+... .++.....+. ...... .....=+++.|--||+++++..
T Consensus 136 mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 136 MTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred Eec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 432 11111100 0111000000 000000 0112235689999999998743
Q ss_pred -----C-CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC
Q 012064 281 -----D-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (471)
Q Consensus 281 -----~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 354 (471)
+ .++++||.+....... ..... .-.+++| -|.
T Consensus 215 ~~~~~~~RkirV~drEg~Lns~s----------------------------------e~~~~-------l~~~LsW-kPs 252 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDREGALNSTS----------------------------------EPVEG-------LQHSLSW-KPS 252 (1265)
T ss_pred EeccCCceeEEEecccchhhccc----------------------------------Ccccc-------cccceee-cCC
Confidence 3 4799999873111000 00111 1346777 899
Q ss_pred CcEEEEe---eCCCeEEEEEccCCeeeE----EecCCCcceEEEEEcCCCCEEEE---eecCCcEEEecCCC
Q 012064 355 CEYVVSG---SDCGRIFIWKKKGGELIR----VIEADRHVVNCIEPHPHSTVLAS---SGIESDIKILTPNA 416 (471)
Q Consensus 355 g~~l~~g---~~dg~v~iwd~~~~~~~~----~~~~h~~~v~~~~~s~~~~~l~s---~~~dg~i~iw~~~~ 416 (471)
|..+++- ..|+.|.+|.- +|-... .+......+..++|+.++..||. ......|++|-+.+
T Consensus 253 gs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 253 GSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 9999875 34568999985 343322 22333345999999999999887 44455599998765
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.46 E-value=1.4e-05 Score=73.31 Aligned_cols=189 Identities=19% Similarity=0.177 Sum_probs=114.5
Q ss_pred eeceeeeEEEEEEccCCCcEEEEEecC---CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 146 LGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
+......+..-+|+|++..+.+..-.. ..+.++|+++++........ ..-...+|+||+..++++.
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-----------g~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-----------GNNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-----------CccCCccCCCCCCEEEEEE
Confidence 444455677788999997655553333 35999999999877666522 2335668999977777777
Q ss_pred eCCCe--EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC----cEEEEecCCCCCCC
Q 012064 223 GSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPN 296 (471)
Q Consensus 223 ~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~d~~~~~~~~ 296 (471)
..||. |+++|+...+... +....+.-..-.|+|||+.++..++. .|++++.+....
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~----------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-- 318 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPR----------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-- 318 (425)
T ss_pred CCCCCccEEEEcCCCCccee----------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--
Confidence 77776 5566776654211 11112222366799999999887743 477777765421
Q ss_pred CCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCe--EEEEEcc
Q 012064 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGR--IFIWKKK 373 (471)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~--v~iwd~~ 373 (471)
...+..+... ..-.+ +|||++++..+. +|. |.+.|+.
T Consensus 319 -----------------------------------~riT~~~~~~----~~p~~-SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 319 -----------------------------------TRLTFSGGGN----SNPVW-SPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -----------------------------------eEeeccCCCC----cCccC-CCCCCEEEEEeccCCceeeEEeccC
Confidence 1111111111 12334 999999987664 344 6667776
Q ss_pred CCeeeEEecCCCcceEEEEEcCCCCEEEEee
Q 012064 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSG 404 (471)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 404 (471)
++...+.+. +........|.|++..+...+
T Consensus 359 ~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 359 SGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 665444332 333455667778887665444
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.46 E-value=0.00026 Score=61.46 Aligned_cols=281 Identities=14% Similarity=0.101 Sum_probs=148.0
Q ss_pred CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC----------CCeEEEEE
Q 012064 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----------DRRVILWD 89 (471)
Q Consensus 20 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~----------d~~i~iwd 89 (471)
+.+.+.|.++++.+. .+. .+..-.+..|||++.+++++. .-.|.+||
T Consensus 17 ~rv~viD~d~~k~lG---------------------mi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D 73 (342)
T PF06433_consen 17 SRVYVIDADSGKLLG---------------------MID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWD 73 (342)
T ss_dssp EEEEEEETTTTEEEE---------------------EEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ceEEEEECCCCcEEE---------------------Eee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEe
Confidence 578888888777652 222 233344678999999887542 33699999
Q ss_pred CCCCceEEEeecCC--Cc----ceeEEEEecCCCCeEEEEEeC--CCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 90 WKTERVKLSFHSGH--ND----NVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 90 ~~~~~~~~~~~~~~--~~----~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
..+-.....+.-.. .. ....++++. |+++++.... -..|.+.|+..++.+.....++ |...-|.
T Consensus 74 ~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~ 145 (342)
T PF06433_consen 74 TQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPS 145 (342)
T ss_dssp TTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEE
T ss_pred cCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEec
Confidence 99988777653222 11 223456777 8888777544 3568888887766654422222 2222344
Q ss_pred CCcEEEEEecCCeEEEEecc-CCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
++.-|.+-+.||.+.-..+. .|+...... +..... ...-+..-++... +..++--+.+|.|+-.|+......-
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t--~~F~~~---~dp~f~~~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKST--KVFDPD---DDPLFEHPAYSRD-GGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEE--EESSTT---TS-B-S--EEETT-TTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeec--cccCCC---CcccccccceECC-CCeEEEEecCCEEEEEeccCCcccc
Confidence 44457888999999999987 444432211 111100 1111122233333 3344446788999888887654211
Q ss_pred CCCCCCCCCcCCCCcc-cCCCccceEEEEEcCCCCeEEEe-e---CC-------cEEEEecCCCCCCCCCCCCCcccccc
Q 012064 241 STDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSY-N---DE-------FIYLFTQDMGLGPNPPPSSPVSTRSE 308 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~-~---~~-------~i~i~d~~~~~~~~~~~~~~~~~~~~ 308 (471)
. .+......... ..-..+.-.-+++++....|... . ++ .|.++|+.++
T Consensus 220 ~----~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------------- 279 (342)
T PF06433_consen 220 G----KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------------- 279 (342)
T ss_dssp E----EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----------------
T ss_pred c----CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----------------
Confidence 0 00000000000 00011223346666654443321 1 11 2666666653
Q ss_pred ccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc-EEEEe-eCCCeEEEEEccCCeeeEEecC
Q 012064 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-SDCGRIFIWKKKGGELIRVIEA 383 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~-~l~~g-~~dg~v~iwd~~~~~~~~~~~~ 383 (471)
+.+..+... ..+.++.. +.+.+ +|++. ..++.+.+||..+|+.++.+..
T Consensus 280 ----------------------krv~Ri~l~---~~~~Si~V-sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 280 ----------------------KRVARIPLE---HPIDSIAV-SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ----------------------EEEEEEEEE---EEESEEEE-ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ----------------------eEEEEEeCC---CccceEEE-ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 333333321 12667777 77766 55443 4579999999999999988864
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.46 E-value=9.4e-05 Score=67.35 Aligned_cols=267 Identities=12% Similarity=0.083 Sum_probs=139.4
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCcccc-ccccc---------------------eecccccceeeeeeeEEecc
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLST-RNFAL---------------------RRRASEDLVLRLGIYAKLDK 59 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~---------------------~~~~~~~~~~~~~~~~~l~~ 59 (471)
+.+++.++...|++|...|.|-||.....+.-. +...+ ...........+.+..-++.
T Consensus 5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~ 84 (395)
T PF08596_consen 5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA 84 (395)
T ss_dssp EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence 456788888999999999999999987654432 10000 00111111223456666777
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEee-c------CCCcceeEEEEecC---CCC---eEEEEEeC
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-S------GHNDNVFQAKIMPF---TDD---RSIVTCAA 126 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~------~~~~~v~~~~~~~~---~~~---~~l~s~~~ 126 (471)
..++|++++.| |=-++|.|..+|.+.|.|+.....+..-. . .....++++.|... .|+ -.+++|..
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 79999999998 44599999999999999997666555421 1 13346778888731 122 46888899
Q ss_pred CCeEEEEeccc-cCcceeeEe----eceeeeEEEEE-EccCC-C------------------cEEEEEecCCeEEEEecc
Q 012064 127 DGQVRHAQILE-RGGVETKLL----GKHQGRAHKLA-IEPGS-P------------------HVFYTCGEDGLVQHFDLR 181 (471)
Q Consensus 127 dg~i~iwd~~~-~~~~~~~~~----~~~~~~v~~~~-~~~~~-~------------------~~l~~~~~dg~i~iwd~~ 181 (471)
.|.+.+|.+.- ........+ ..+.++|..+. ++.+. . .-++....+..++++.+.
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 99999998752 222111111 13445555554 32211 0 113444456789999888
Q ss_pred CCccceeeeecccCCcCcceeeeeeEEEEEc----CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc
Q 012064 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID----PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (471)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (471)
+.+....... .......+.+- ..++..|++-..+|.+++|.+...+.+....+. .
T Consensus 244 ~~k~~~K~~~----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~-----------~ 302 (395)
T PF08596_consen 244 KSKGAHKSFD----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP-----------P 302 (395)
T ss_dssp ---EEEEE-S----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S-----------S
T ss_pred CCcccceeec----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC-----------C
Confidence 7665433221 11122333332 123567888899999999999887654432221 0
Q ss_pred CCCccceEEEEEcCCCCeEEEeeCCcEEEEecC
Q 012064 258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (471)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~ 290 (471)
......+....++++|..++-.+...+.++.+-
T Consensus 303 ~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 303 PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp ---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred ccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 111233456677999998887776665555443
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.44 E-value=1.6e-07 Score=85.52 Aligned_cols=201 Identities=16% Similarity=0.165 Sum_probs=128.8
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEec---
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS--- 80 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~--- 80 (471)
.++.+...+++|..+|.|-+-......-. -.....+|....++++|++ |...||.|-
T Consensus 65 ~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 65 FYGNDRCILAVGSATGNISLLSVRHPHDS-------------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred hcCCchhhhhhccccCceEEeecCCcccc-------------------cceecccccccccccccccccHHHHHhhhhhh
Confidence 34555677899999999988876632211 1134567889999999998 456677653
Q ss_pred -CCCeEEEEECCCC--ce--EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 81 -DDRRVILWDWKTE--RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 81 -~d~~i~iwd~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
.|..+.|||+.++ .+ ...+..+......+++|.. +.+.+.+|.....+.++|++...... ..-.+..+..
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG 200 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQG 200 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhhhhhh---hhhhhhhccc
Confidence 2567999999876 22 1222222344566888987 89999999998899999987443221 1112335667
Q ss_pred EEEccCCCcEEEEEecCCeEEEEe-ccCCc-cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCCeEEEEE
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFD-LRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYD 232 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d 232 (471)
+.+.|-.... ++...||.|.+|| .++-+ +...+...+. . ....+..++|+|.....+++.. ..++|++||
T Consensus 201 ~tVdp~~~nY-~cs~~dg~iAiwD~~rnienpl~~i~~~~N-~-----~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 201 ITVDPFSPNY-FCSNSDGDIAIWDTYRNIENPLQIILRNEN-K-----KPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ceecCCCCCc-eeccccCceeeccchhhhccHHHHHhhCCC-C-----cccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 7788844344 4555699999999 33322 2222211110 0 2235889999998555666655 457899999
Q ss_pred cCCC
Q 012064 233 IRKY 236 (471)
Q Consensus 233 ~~~~ 236 (471)
+...
T Consensus 274 i~~v 277 (783)
T KOG1008|consen 274 ICVV 277 (783)
T ss_pred cccc
Confidence 8754
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=8.5e-08 Score=87.23 Aligned_cols=207 Identities=16% Similarity=0.150 Sum_probs=133.4
Q ss_pred cccEEEEEEcCCC--CEEEEecCCCeEEEEECCCCceE-EEeecCCCcceeEEEEecCCCCeEEEEEeC----CCeEEEE
Q 012064 61 RGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHA 133 (471)
Q Consensus 61 ~~~V~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iw 133 (471)
...+.|++++-+. ..++.|..+|.|.+-.+....-- ..+..+|....++++|++. |.+.|++|-. |..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCccce
Confidence 3557788876543 57889999999999877544322 4555788899999999985 6677777643 5679999
Q ss_pred ecccc--CcceeeEeec-eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 134 QILER--GGVETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 134 d~~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
|+.+. .+.....+.+ ......+++|..+. +++++|.....+.++|++......... ....+..+.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv-----------nTk~vqG~t 202 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV-----------NTKYVQGIT 202 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh-----------hhhhcccce
Confidence 99876 3322222332 33455688898766 688889888899999998442211111 223467778
Q ss_pred EcCCCCceEEEEeCCCeEEEEE-cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee--CCcEEE
Q 012064 211 IDPRNANLFAVAGSDEYTRLYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN--DEFIYL 286 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~~~i~i 286 (471)
.+|-.++++++- .||.|.+|| .++-+. |+.. ...........+..++|+|... .+++.. .++|++
T Consensus 203 Vdp~~~nY~cs~-~dg~iAiwD~~rnien--------pl~~--i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 203 VDPFSPNYFCSN-SDGDIAIWDTYRNIEN--------PLQI--ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred ecCCCCCceecc-ccCceeeccchhhhcc--------HHHH--HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 888556777654 499999999 433221 0000 0000111123588999999543 455555 447999
Q ss_pred EecCC
Q 012064 287 FTQDM 291 (471)
Q Consensus 287 ~d~~~ 291 (471)
||+..
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 98754
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.43 E-value=2.8e-05 Score=72.87 Aligned_cols=198 Identities=12% Similarity=0.032 Sum_probs=113.5
Q ss_pred CCCCCCCcEEE-EecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 4 ASNNNNNKRAR-TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 4 ~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
+..+|+|+.+. +.-..+.+.+.|.++.+.. .++.- .+....++++|+|+++++.+.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~---------------------~qV~V-dgnpd~v~~spdGk~afvTsyN 255 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVA---------------------WQVMV-DGNLDNVDTDYDGKYAFSTCYN 255 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEE---------------------EEEEe-CCCcccceECCCCCEEEEeccC
Confidence 44566776553 3344567777777755443 22221 1234567899999999887643
Q ss_pred C----eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc----cCcceeeEeeceeeeEE
Q 012064 83 R----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE----RGGVETKLLGKHQGRAH 154 (471)
Q Consensus 83 ~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~ 154 (471)
. ++..-+..+...+..+ .-..+ -++.+ +|++...+ ++.|.+.|..+ +..... .-.-.....
T Consensus 256 sE~G~tl~em~a~e~d~~vvf---ni~~i--ea~vk--dGK~~~V~--gn~V~VID~~t~~~~~~~v~~--yIPVGKsPH 324 (635)
T PRK02888 256 SEEGVTLAEMMAAERDWVVVF---NIARI--EEAVK--AGKFKTIG--GSKVPVVDGRKAANAGSALTR--YVPVPKNPH 324 (635)
T ss_pred cccCcceeeeccccCceEEEE---chHHH--HHhhh--CCCEEEEC--CCEEEEEECCccccCCcceEE--EEECCCCcc
Confidence 2 2222222211111111 00000 02344 67766653 56899999877 222221 222445678
Q ss_pred EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc-CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 012064 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (471)
Q Consensus 155 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (471)
.+.++|||+++++++..+.++.++|+++.+....-+....... ....-.......+|+++ ++...+-.-|..|..|++
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeecceeEEEeh
Confidence 8999999988888888899999999988653110000000000 00001123456788998 577888889999999998
Q ss_pred CC
Q 012064 234 RK 235 (471)
Q Consensus 234 ~~ 235 (471)
..
T Consensus 404 ~~ 405 (635)
T PRK02888 404 EA 405 (635)
T ss_pred HH
Confidence 76
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.37 E-value=5.7e-05 Score=69.49 Aligned_cols=175 Identities=12% Similarity=0.135 Sum_probs=104.5
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe---CC-CeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---AD-GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
.+.+=|.+ +.....+ ..-...+...+|+| ++..++... .. ..+.++++.+++...... ..+.-...+|+
T Consensus 174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~g~~~~P~fs 246 (425)
T COG0823 174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FNGNNGAPAFS 246 (425)
T ss_pred eEEEEccC-CcceeEe-cccCcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCccceeec---cCCccCCccCC
Confidence 34444433 4433333 33445677788999 888766542 22 468899998887665433 33444557899
Q ss_pred cCCCcEEEEEecCCe--EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEE--EcCC
Q 012064 160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY--DIRK 235 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~--d~~~ 235 (471)
|||++++++...||. |++.|+.+++..+ +.. ..+.-..-.|+|||..++++.+..|.-.+| +...
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCccee-ccc----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 999988888888875 5666777776333 221 111122567999976666676777765444 5544
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCc--EEEEecCCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEF--IYLFTQDMG 292 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~--i~i~d~~~~ 292 (471)
.+.. .+... ...-..-.|+|||++++..+ ++. |.+.++.++
T Consensus 316 ~~~~---------------riT~~-~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 316 SQVT---------------RLTFS-GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred Ccee---------------Eeecc-CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 4311 01111 11112667999999998776 444 666666543
No 340
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.35 E-value=0.003 Score=60.50 Aligned_cols=215 Identities=15% Similarity=0.097 Sum_probs=113.5
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
+.+++.++.++.|.-.|.++|+.+-+...... ... .....+...-..+++ .+..++.++.|+.+.-.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~----~~~------~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP----DDV------IPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC----ccc------ccccccccccccceE--ECCEEEEEcCCCEEEEEE
Confidence 45677777788899999999987731110000 000 000000000001122 234566778899999999
Q ss_pred CCCCceEEEeecCCCcceeEEEEecC-CCCeEEEEEe------CCCeEEEEeccccCcceeeEee-ce------------
Q 012064 90 WKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTCA------ADGQVRHAQILERGGVETKLLG-KH------------ 149 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~-~~------------ 149 (471)
.++|+.+.+........-..+.-+|. .++. ++.+. .+|.|..+|.++++.+-..... ..
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~ 215 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVG 215 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccc
Confidence 99999987763221111011111111 0444 44433 2678888888887754321111 00
Q ss_pred ----------------eeeE-EEEEEccCCCcEEEEEe-c----CC-----------eEEEEeccCCccceeeeecccCC
Q 012064 150 ----------------QGRA-HKLAIEPGSPHVFYTCG-E----DG-----------LVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 150 ----------------~~~v-~~~~~~~~~~~~l~~~~-~----dg-----------~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
...+ ..+++.|... +++.+. . ++ .|.-.|+++++....++......
T Consensus 216 ~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~ 294 (527)
T TIGR03075 216 GEPGAKTWPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDE 294 (527)
T ss_pred cccccCCCCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCC
Confidence 0111 1235666553 445443 1 12 67888999999988877643322
Q ss_pred cCcceeeeeeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCCccC
Q 012064 197 RRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
... .......-+....++. ..++.+..+|.+++.|.++++.+
T Consensus 295 wD~-d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 295 WDY-DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccc-cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111 0111112222323432 37889999999999999998875
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.00021 Score=66.68 Aligned_cols=120 Identities=16% Similarity=0.170 Sum_probs=90.2
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
|...|.--+++..+++++.|+.-|.+.+|+-..++....-..+-.+.+.....++ +..+++.|+..|.|.++.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhccC
Confidence 4455555566778899999999999999998766653333233455666677887 88888889999999999887643
Q ss_pred cceeeE----eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 140 GVETKL----LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 140 ~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
+..... -..|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 322111 12367889999999999 4689999999999988877
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.33 E-value=0.00015 Score=61.08 Aligned_cols=223 Identities=12% Similarity=0.096 Sum_probs=113.9
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
+.+.+-...+.+++|+|+...++++....+.|..++.+ ++.++.+.... ....-.+++..+ +.++++.-
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---------~~D~EgI~y~g~-~~~vl~~E 83 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---------FGDYEGITYLGN-GRYVLSEE 83 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------SSEEEEEE-ST-TEEEEEET
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---------CCCceeEEEECC-CEEEEEEc
Confidence 33556666799999999877888888999999999974 67777766532 235678888765 56666555
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCC
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~ 302 (471)
.++.+.++++......-... ....+. ......++..+..++|+|.++.|..+. ..-..+|.+........+.
T Consensus 84 r~~~L~~~~~~~~~~~~~~~---~~~~~~-l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~--- 156 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRA---DVQKIS-LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF--- 156 (248)
T ss_dssp TTTEEEEEEE----TT--EE---EEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E---
T ss_pred CCCcEEEEEEeccccccchh---hceEEe-cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee---
Confidence 68999999985432110000 000000 011123456789999999877666665 3345666654311000000
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
... ............ .+.++.+....+.+++...++..|..+| .+|+.+..+.
T Consensus 157 ------------------~~~------~~~~~~~~~~~~--d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 157 ------------------VSD------DQDLDDDKLFVR--DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp ------------------EEE-------HHHH-HT--SS-----EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred ------------------ecc------ccccccccceec--cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 000 000000000111 1567777334566777788888999999 5777766543
Q ss_pred CCC---------cceEEEEEcCCCCEEEEeecCCcEEEe
Q 012064 383 ADR---------HVVNCIEPHPHSTVLASSGIESDIKIL 412 (471)
Q Consensus 383 ~h~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (471)
-.. .....++|.++|++.++. +-+..+++
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 221 257899999999765544 56666554
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.32 E-value=0.00025 Score=64.57 Aligned_cols=281 Identities=14% Similarity=0.186 Sum_probs=142.1
Q ss_pred cCCCCEEEEe---------cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 70 NTDGDILISG---------SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 70 s~~g~~l~s~---------~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
|||+++++.. +..+.+.|||+++++. ..+.. ....+....|+| +|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~-~~l~~-~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI-TPLTP-PPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE-EESS--EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce-EECcC-Cccccccceeec--CCCeeEEEe-cCceEEEECCCCCe
Confidence 6888887763 2346799999998775 33322 256788999999 999999887 57899998766633
Q ss_pred ceeeEeec-------e---------eeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeee
Q 012064 141 VETKLLGK-------H---------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 141 ~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (471)
.+. ...+ - -+.-.++.|+||++++++.--.+..+..+.+........ ...
T Consensus 76 ~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------------~yp 141 (353)
T PF00930_consen 76 TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------------QYP 141 (353)
T ss_dssp EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------------SS-
T ss_pred EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------------cCC
Confidence 221 1111 0 012356889999976665555555555544322111100 000
Q ss_pred eeEEEEEcCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee-
Q 012064 205 NLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN- 280 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~- 280 (471)
.+..+.+-.- |..+. .+.++|+.+++... ..+..........+..+.|.++++ +++.-.
T Consensus 142 ~~~~~~YPk~-------G~~np~v~l~v~~~~~~~~~~----------~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 142 EVESIRYPKA-------GDPNPRVSLFVVDLASGKTTE----------LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp EEEEEE--BT-------TS---EEEEEEEESSSTCCCE----------E---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred cccccccCCC-------CCcCCceEEEEEECCCCcEEE----------eeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 2333333211 11222 36678887765320 011111123367789999999998 444332
Q ss_pred C--C--cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeE-eeeeeeeCCCC
Q 012064 281 D--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT-VKGVNFFGPKC 355 (471)
Q Consensus 281 ~--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~g 355 (471)
. + .+.++|..++..... . ......... -....++.+++
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~------------------------------------~-~e~~~~Wv~~~~~~~~~~~~~ 247 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVV------------------------------------L-EETSDGWVDVYDPPHFLGPDG 247 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEE------------------------------------E-EEESSSSSSSSSEEEE-TTTS
T ss_pred cCCCEEEEEEEECCCCceeEE------------------------------------E-EecCCcceeeecccccccCCC
Confidence 2 2 366777765421110 0 011111100 12233322444
Q ss_pred -cEEEEeeCCCe--EEEEEccCCeeeEEecCCCcceEE-EEEcCCCCEEE-EeecC----CcEEEecCC-CCCCcccCc
Q 012064 356 -EYVVSGSDCGR--IFIWKKKGGELIRVIEADRHVVNC-IEPHPHSTVLA-SSGIE----SDIKILTPN-AADRATLPT 424 (471)
Q Consensus 356 -~~l~~g~~dg~--v~iwd~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~-s~~~d----g~i~iw~~~-~~~~~~~~~ 424 (471)
.++.....+|. |++++...+. ...+....-.|.. +.|+++++.|. ++..+ ..|+.-++. .++...+..
T Consensus 248 ~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 248 NEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp SEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 45555556664 5566665555 4455555556644 78888877543 45442 245555666 555544443
No 344
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.32 E-value=0.0042 Score=60.74 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=52.0
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+.++.. -+|+++|.-+ ..|++|+..+.+.++.-..|..++..+...-.|..++.|+.-+.+.+-....
T Consensus 832 v~aL~~--fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 832 VYALVE--FNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred eeehhh--hCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 555543 3788887654 5899999988867766667788899999988999999998888877655544
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.30 E-value=0.00076 Score=62.42 Aligned_cols=150 Identities=10% Similarity=0.084 Sum_probs=82.4
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
+.+....-....+.++|+|++++.+ .||...|+.....+. .. .+.-....|.+ +++ +++-...++|.++.
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-k~-----~G~g~~~vw~~--~n~-yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-KA-----FGSGLSFVWSS--RNR-YAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-EE-----EEE-SEEEE-T--SSE-EEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-cc-----cCceeEEEEec--Ccc-EEEEECCCeEEEEE
Confidence 3444455668899999999999985 457788888443333 22 23456778987 665 55555578899963
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
--+.+......+......|.. | .+|...+. +.|.+||.++++.+..+.. .+|..+.|+++
T Consensus 96 n~~~~~~k~i~~~~~~~~If~------G-~LL~~~~~-~~i~~yDw~~~~~i~~i~v------------~~vk~V~Ws~~ 155 (443)
T PF04053_consen 96 NFKNEVVKSIKLPFSVEKIFG------G-NLLGVKSS-DFICFYDWETGKLIRRIDV------------SAVKYVIWSDD 155 (443)
T ss_dssp TTEE-TT-----SS-EEEEE-------S-SSEEEEET-TEEEEE-TTT--EEEEESS-------------E-EEEEE-TT
T ss_pred cCccccceEEcCCcccceEEc------C-cEEEEECC-CCEEEEEhhHcceeeEEec------------CCCcEEEEECC
Confidence 223222222112221222322 6 45555544 4899999999998888753 24789999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCC
Q 012064 215 NANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
+.+++..+.+ .+.+++....
T Consensus 156 -g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 156 -GELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -SSEEEEE-S--SEEEEEE-HH
T ss_pred -CCEEEEEeCC-eEEEEEecch
Confidence 6788777655 5777776543
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.28 E-value=0.0017 Score=57.03 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=89.5
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeE-----
Q 012064 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL----- 145 (471)
Q Consensus 71 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 145 (471)
..++.|+.|..+| +.+++.......... .+...|..+...| +-+.+++-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899999998 899998433333333 2334499999998 777777665 5999999987655443110
Q ss_pred -------eeceeeeEEEEE--EccCCCcEEEEEecCCeEEEEeccCCc-----cceeeeecccCCcCcceeeeeeEEEEE
Q 012064 146 -------LGKHQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTGA-----ATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 146 -------~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
.......+...+ -...+ ...+.......|.+|...... ..+.+. -...+.+++|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-----------lp~~~~~i~~ 146 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-----------LPDPPSSIAF 146 (275)
T ss_pred ccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEE-----------cCCCcEEEEE
Confidence 001122333333 11233 334455556689998887642 223333 2346788999
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
.++ .++.|..++ ..+.|+.++..
T Consensus 147 ~~~---~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 147 LGN---KICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred eCC---EEEEEeCCc-eEEEecCCCCc
Confidence 853 566676554 78889986653
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.27 E-value=0.00071 Score=62.63 Aligned_cols=234 Identities=14% Similarity=0.152 Sum_probs=115.3
Q ss_pred CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC
Q 012064 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (471)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (471)
.-....+.++| ++++++.++ ||.-.++..... . ....+.-...+|.+.+ .+++-...+.|.++.--+.
T Consensus 32 ~~~p~~ls~np--ngr~v~V~g-~geY~iyt~~~~---r----~k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 32 EIYPQSLSHNP--NGRFVLVCG-DGEYEIYTALAW---R----NKAFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp SS--SEEEE-T--TSSEEEEEE-TTEEEEEETTTT---E----EEEEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE
T ss_pred CcCCeeEEECC--CCCEEEEEc-CCEEEEEEccCC---c----ccccCceeEEEEecCc--cEEEEECCCeEEEEEcCcc
Confidence 34567899999 999988855 777777762111 1 1123455668888855 3677777888999632222
Q ss_pred ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccc
Q 012064 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (471)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
+....+... ..+..+-. |.+|...+.+ .|.+||..+++...... -.+
T Consensus 100 ~~~k~i~~~-----------~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~-----------------v~~ 146 (443)
T PF04053_consen 100 EVVKSIKLP-----------FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID-----------------VSA 146 (443)
T ss_dssp -TT-----S-----------S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES-----------------S-E
T ss_pred ccceEEcCC-----------cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe-----------------cCC
Confidence 222233321 12333322 4566665544 89999999887543321 123
Q ss_pred eEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCcee
Q 012064 264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (471)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (471)
|..+.|+++|.+++..+++.+++++.+...... ...............-. .
T Consensus 147 vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~---------------------------~~~~g~e~~f~~~~E~~--~ 197 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKDSIYILKYNLEAVAA---------------------------IPEEGVEDAFELIHEIS--E 197 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH---------------------------BTTTB-GGGEEEEEEE---S
T ss_pred CcEEEEECCCCEEEEEeCCeEEEEEecchhccc---------------------------ccccCchhceEEEEEec--c
Confidence 889999999999999999998888764310000 00000000112222211 1
Q ss_pred EeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 344 ~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
.|.+.+| ..| .++..+.. .++. +-.|+. ..+..-..++.=+...|..+.+.....|+.+..+.++..+
T Consensus 198 ~IkSg~W-~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 198 RIKSGCW-VED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp --SEEEE-ETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred eeEEEEE-EcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 3777887 444 33333333 6665 333432 2232224467777788877888888899999988887543
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.20 E-value=6.2e-05 Score=68.92 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=77.8
Q ss_pred eeeEEEEEEccCCCcEEEEE----ecCCe----EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 150 QGRAHKLAIEPGSPHVFYTC----GEDGL----VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~~~----~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
+....++.|+...++.+.+. +.+|. -.+|++..++.. ....... .....+.+.+++|+ ...++.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsvtsi------pL~s~v~~ca~sp~-E~kLvl 276 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSVTSI------PLPSQVICCARSPS-EDKLVL 276 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEEEEE------ecCCcceEEecCcc-cceEEE
Confidence 34446677776555666554 22332 345665544322 2111111 14557899999999 689999
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
|+.||.|.+||...+.- ......-..+.++|+|+|.++++++ .|.+.+||+.-.
T Consensus 277 GC~DgSiiLyD~~~~~t-----------------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVT-----------------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EecCCeEEEEEcCCCee-----------------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99999999999876531 1112234468899999999999888 579999998654
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.18 E-value=0.0056 Score=56.72 Aligned_cols=177 Identities=10% Similarity=0.063 Sum_probs=91.0
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee-----eEeeceeeeEEEEEE
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-----KLLGKHQGRAHKLAI 158 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v~~~~~ 158 (471)
.|.||+. .|+.+.++.-.+ +.+.++.|.. ...|+....||.++++|+.... ... ....-....+....+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTD---DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECC---CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccccc
Confidence 5999995 577777764444 8999999985 5566677789999999985333 100 000111122223333
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCc-cceeeeecccCCcCc--ceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRN--YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
..+| ++.-..++.+.+..--... ..+.+. ..+.... +..........++.+ ....+....++.+.+.+-..
T Consensus 136 ~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~--~~p~~~~~~~~~~~~~~i~~l~~~-~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 136 YKNG---IVVLTGNNRFYVVNNIDEPVKLRRLP--EIPGLWTKFHWWPSWTVIPLLSSD-RVVEILLANGETIYIIDENS 209 (410)
T ss_pred CCCC---EEEECCCCeEEEEeCccccchhhccc--cCCCcccccccccccccceEeecC-cceEEEEecCCEEEEEEccc
Confidence 4445 3333445555444322211 111111 1110000 000000001234444 33444445556666444332
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
.+. . ...+++..++.||+|+++|... +|.+.+...+-
T Consensus 210 ~~~------------------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 210 FKQ------------------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ccc------------------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 110 1 1245799999999999999887 46777776543
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.16 E-value=0.0079 Score=57.71 Aligned_cols=210 Identities=15% Similarity=0.078 Sum_probs=111.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCccee----------EEEEecCCCCeEEEEEeCCCeEEEEeccccCcce
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF----------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 142 (471)
+..++.++.++.|.-.|..+|+.+.++...-...+. .+++ .+..++.++.|+.+.-.|..+++.+-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456666777888999999999988876322111111 1222 23467777889999999998888765
Q ss_pred eeEeeceee--eEEEEEEccCCCcEEEEEe------cCCeEEEEeccCCccceeeeecccCCc------------C---c
Q 012064 143 TKLLGKHQG--RAHKLAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDR------------R---N 199 (471)
Q Consensus 143 ~~~~~~~~~--~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~------------~---~ 199 (471)
......+.. .+.+--.-.++ . ++.+. .+|.|..+|.++++.+..+........ . .
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g-~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKG-K-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred ecccccccccccccCCcEEECC-E-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 432221111 11111111133 3 44443 268999999999998876554322100 0 0
Q ss_pred c-----e-eeeeeE-EEEEcCCCCceEEEEeCC-----C-----------eEEEEEcCCCccCCCCCCCCCCCcCCCCcc
Q 012064 200 Y-----M-TVVNLN-AIAIDPRNANLFAVAGSD-----E-----------YTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (471)
Q Consensus 200 ~-----~-~~~~v~-~~~~~p~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (471)
. . ....+. .++++|. ..+++.+..+ + .|.-.|++++++.-.++..+ ...
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~-~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-------~D~ 294 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPE-TNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-------HDE 294 (527)
T ss_pred CCCCccccCCCCccCceeEcCC-CCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-------CCC
Confidence 0 0 011111 3467776 3455555422 2 46666777776543322210 000
Q ss_pred cCC-CccceEEEEEcCCCC---eEEEee-CCcEEEEecCCCCCCC
Q 012064 257 IGD-EQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPN 296 (471)
Q Consensus 257 ~~~-~~~~i~~~~~~~~~~---~l~~~~-~~~i~i~d~~~~~~~~ 296 (471)
..- ......-+....+|+ .++.+. +|.+++.|..+++.+.
T Consensus 295 wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 295 WDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 000 001112222334665 455555 6789999999987653
No 351
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=0.0019 Score=54.38 Aligned_cols=177 Identities=11% Similarity=0.100 Sum_probs=118.5
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
+.|-...|.++.|+|+.+.|.+......-.||=..+|+.+.++.-..-..-..+.|.. ++++.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--CCEEEEEehhcceEEEEEEc
Confidence 4455566999999999988888777777778877789998887533334456678887 78887777778888888776
Q ss_pred ccCccee-----eEee---ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 137 ERGGVET-----KLLG---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 137 ~~~~~~~-----~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.+..... ..+. ..+.....++|.|.+. .|+.+-+..-+.||........-...............-..+.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 5532211 1111 1245678899999984 56777777778888766433111111111111111112346788
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
+.|++..+++++.+.+++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 9999887888999999998888887654
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.15 E-value=4.5e-05 Score=69.77 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=62.7
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 137 (471)
.....|.|++++|+.+.|+.|+.||.|.+||...+..... ...-..+.++|+| +|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp--~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHP--DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcC--CCcEEEEEcCCceEEEEEeec
Confidence 4678899999999999999999999999999876643222 3345678899999 999999999999999999853
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.14 E-value=0.0039 Score=59.52 Aligned_cols=162 Identities=14% Similarity=0.045 Sum_probs=92.2
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCC-----ccee--EEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeE
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHN-----DNVF--QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 145 (471)
+..+..++.++.+.-.|..+|+.+.++..... ..+. .+... ++..++.++.+|.+.-+|.++++.+-...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 44566677789999999999998877632221 0010 11111 22678888889999999999888765432
Q ss_pred eecee---eeEE-EEEEccCCCcEEEEEe---------cCCeEEEEeccCCccceeeeecccCC--cCccee--------
Q 012064 146 LGKHQ---GRAH-KLAIEPGSPHVFYTCG---------EDGLVQHFDLRTGAATELFTCRPIDD--RRNYMT-------- 202 (471)
Q Consensus 146 ~~~~~---~~v~-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~-------- 202 (471)
...+. ..+. ...+. ++ +++.++ .++.+..+|.++++....+....... .+....
T Consensus 138 ~~~~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred CCCCcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 32221 0011 11222 22 344443 46889999999999887766532110 000000
Q ss_pred eeee-EEEEEcCCCCceEEEEeCCC------------------eEEEEEcCCCccCCC
Q 012064 203 VVNL-NAIAIDPRNANLFAVAGSDE------------------YTRLYDIRKYKWDGS 241 (471)
Q Consensus 203 ~~~v-~~~~~~p~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~ 241 (471)
...+ ...++++. +.+++.++.++ .+.-+|..+++..-.
T Consensus 215 g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 215 GGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF 271 (488)
T ss_pred CCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence 0001 13445554 34666776554 688889988876544
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=6.1e-05 Score=71.55 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=85.6
Q ss_pred EEEEEcCCCCEEEEecC----CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 65 NTVSFNTDGDILISGSD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 65 ~~~~~s~~g~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
+-.+|+|...+||.++. .|.|.||- ++|++.... ...-.+.+++|+| ..-.|+.+-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh--HHHHHhhccccceeEEEecCCcee
Confidence 34579999999998764 57898884 677764433 1223456799999 777888888889999999755443
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (471)
- .....|..+|..+.|+++| ..++++..-|.+.+|......
T Consensus 94 h--tv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 94 H--TVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred e--eeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeecc
Confidence 2 2355699999999999999 588999999999999876443
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=0.0036 Score=51.53 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=80.5
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
..+++.|+..+.+.--|..+|+...+.. -...+.+-+.- -|++++.|...|.+++.+..++........ . +.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~--~-~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI--L-ET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeee--h-hh
Confidence 4677888888999999999999877653 33445544443 366799999999999999999876554221 1 22
Q ss_pred E-EEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeee
Q 012064 153 A-HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (471)
Q Consensus 153 v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (471)
| ......+++ .++..++.|+..+..|.++...+...++
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEecccccceEEeccc
Confidence 2 223455667 5899999999999999999888877665
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=0.0013 Score=54.78 Aligned_cols=204 Identities=16% Similarity=0.193 Sum_probs=116.2
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecC-----CCeEEEEECCCCc-eEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSD-----DRRVILWDWKTER-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD- 127 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d- 127 (471)
+.+-||. .|||||.+|...-. .|.|-|||...+- .+.++ ..|.-.-..+.|.+ ||+.++.+...
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~--DGrtlvvanGGI 183 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMA--DGRTLVVANGGI 183 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEec--CCcEEEEeCCce
Confidence 4455554 68999999875433 3789999987543 33444 56766778899999 99999887531
Q ss_pred -----------------CeEEEEeccccCcceeeEee--ceeeeEEEEEEccCCCcEEEEEecCC-----eEEEEeccCC
Q 012064 128 -----------------GQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTG 183 (471)
Q Consensus 128 -----------------g~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 183 (471)
-++.+.|..+++.+++..+. .+.-.|..++..+++ .+++.+-..| .-.+=-...+
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g 262 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKG 262 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCC
Confidence 12344554555555555555 455678888888888 4444332222 1111111223
Q ss_pred ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccc
Q 012064 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (471)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
+..+.+...+.. .......+-+++.+-+.+...+++-..+...+||..++.......+ ..
T Consensus 263 ~~l~~~~~pee~---~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-----------------~d 322 (366)
T COG3490 263 EPLEFLDLPEEQ---TAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-----------------PD 322 (366)
T ss_pred CcCcccCCCHHH---HHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-----------------cc
Confidence 333222221110 0012345778888877554445555566678999999875432111 11
Q ss_pred eEEEEEcCCCCeEEEeeCCcEEEEec
Q 012064 264 ITGLAFSDQSELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~~i~i~d~ 289 (471)
...++-.. +-+.++..+|.+..+.-
T Consensus 323 aaGva~~~-~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 323 AAGVAAAK-GGFAVSSGQGRIIFYSR 347 (366)
T ss_pred cccceecc-CceEEecCCceEEeccc
Confidence 12222222 34777777888888753
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.07 E-value=0.00045 Score=49.17 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=67.2
Q ss_pred EEEEEEcC---CC-CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 64 VNTVSFNT---DG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 64 V~~~~~s~---~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
|++|++.. || +.|+.|+.|..|++|+- .+.+.++ .-...|.++.-.. +..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei--~e~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEI--TETDKVTSLCSLG---GGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEE--ecccceEEEEEcC---CCEEEEEecCCEEEEEeCccee
Confidence 55666543 44 68999999999999983 4666666 3456788887775 4778999999999999753332
Q ss_pred cceeeEeeceeeeEEEEEE---ccCCCcEEEEEecCCeEE
Q 012064 140 GVETKLLGKHQGRAHKLAI---EPGSPHVFYTCGEDGLVQ 176 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~ 176 (471)
.. .+ ....+.++.+ .-+|...|++|-.+|.|-
T Consensus 75 WR----iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WR----IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee----ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 11 1222444433 445555688888888774
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.04 E-value=0.0068 Score=56.87 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=72.9
Q ss_pred ccEEEEEEcCCCCEEEEe-cC----CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC--------
Q 012064 62 GCVNTVSFNTDGDILISG-SD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG-------- 128 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~-~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------- 128 (471)
-.+....+||||+++|.+ +. ...++++|+++|+.+...... .....+.|.+ +++.|+....+.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~--d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD--DGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT--TSSEEEEEECSTTTSS-CCG
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC--CCCEEEEEEeCcccccccCC
Confidence 344567899999998854 22 246999999999876543222 1222389999 877776554332
Q ss_pred ---eEEEEeccccCcceeeEeeceeee--EEEEEEccCCCcEEEEEecC---CeEEEEeccCC
Q 012064 129 ---QVRHAQILERGGVETKLLGKHQGR--AHKLAIEPGSPHVFYTCGED---GLVQHFDLRTG 183 (471)
Q Consensus 129 ---~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 183 (471)
.|+.|++.+........+...... ...+..+++++.+++..... ..+.+.|+..+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 377777766544422334433332 56788899997666555443 34788888775
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.99 E-value=0.0071 Score=50.93 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=121.9
Q ss_pred eeeeeeEEeccc-cccEEEEEEcCCCCEEEEecCCC--eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 49 LRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 49 ~~~~~~~~l~~h-~~~V~~~~~s~~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
...++++++... ......+.|..+|.++-+.|.-| .|+.+|+.+++......-...---..++.. +++.....=
T Consensus 31 ~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTW 107 (264)
T PF05096_consen 31 YSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEES
T ss_pred eeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEe
Confidence 355666666532 34566788877888888887766 799999999997666533332223344444 445555555
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.++...+||..+.+.+....+. +.=+.++ .++.. |+.+.....|+.+|.++-+....+...... .....
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g-----~pv~~ 176 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNG-----RPVSN 176 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETT-----EE---
T ss_pred cCCeEEEEccccceEEEEEecC---CcceEEE--cCCCE-EEEECCccceEEECCcccceEEEEEEEECC-----EECCC
Confidence 6788999999877666553333 3445666 45544 455555678999999988777766553211 12335
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
++-+.+.. +.+.|-.-....|...|..+++.....++..................-.+.+++.|....|...+
T Consensus 177 LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 177 LNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66677763 56666666667788888888876654433211110000000111134578999998776555444
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.0046 Score=54.34 Aligned_cols=226 Identities=16% Similarity=0.105 Sum_probs=119.2
Q ss_pred EEEecCCCCeEEEEE-eCCCeEEEEeccccCcceeeEeeceeeeEEEE-EEccCCCcEEEEEecCCeEEEEeccCCccce
Q 012064 110 AKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKL-AIEPGSPHVFYTCGEDGLVQHFDLRTGAATE 187 (471)
Q Consensus 110 ~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 187 (471)
..|.| +...|+-+ -..+.|.-|+..+++... +. +.+.+.++ .+...+ .|+++.. .+.+++.+++....
T Consensus 30 P~w~~--~~~~L~w~DI~~~~i~r~~~~~g~~~~---~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t 99 (307)
T COG3386 30 PVWDP--DRGALLWVDILGGRIHRLDPETGKKRV---FP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKIT 99 (307)
T ss_pred ccCcC--CCCEEEEEeCCCCeEEEecCCcCceEE---EE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeE
Confidence 34666 66644444 346678888876544322 22 22333333 344444 3454433 36667776555432
Q ss_pred eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC------------CeEEEEEcCCCccCCCCCCCCCCCcCCCCc
Q 012064 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------------EYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (471)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (471)
.+....... .....+.....|+| .+.+ ++.. |.++.+|.. +. ...
T Consensus 100 ~~~~~~~~~-----~~~r~ND~~v~pdG-~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~-g~---------------~~~ 156 (307)
T COG3386 100 LLAEPEDGL-----PLNRPNDGVVDPDG-RIWF-GDMGYFDLGKSEERPTGSLYRVDPD-GG---------------VVR 156 (307)
T ss_pred EeccccCCC-----CcCCCCceeEcCCC-CEEE-eCCCccccCccccCCcceEEEEcCC-CC---------------EEE
Confidence 222111111 22356788889984 3333 3322 223444431 11 112
Q ss_pred ccCCCccceEEEEEcCCCCeEEEeeC--CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCC
Q 012064 256 LIGDEQVGITGLAFSDQSELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (471)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (471)
+...+-..-+.++||||++.|..+.. +.|+.|++.... ... . ....
T Consensus 157 l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~-g~~------------------------------~-~~~~ 204 (307)
T COG3386 157 LLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT-GPI------------------------------G-GRRG 204 (307)
T ss_pred eecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc-Ccc------------------------------C-Ccce
Confidence 22233344578999999998877764 567777765300 000 0 0000
Q ss_pred eeeecCCceeEeeeeeeeCCCCcEEEEeeCCC-eEEEEEccCCeeeEEecCCCcceEEEEEc-CCCCEEEEe
Q 012064 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASS 403 (471)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg-~v~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~ 403 (471)
...... .....-.++. +.+|.+-+++-.+| .|.+|+.. |+++..+.-+...+++++|- |+.+.|...
T Consensus 205 ~~~~~~-~~G~PDG~~v-DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 205 FVDFDE-EPGLPDGMAV-DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred EEEccC-CCCCCCceEE-eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 111111 1111334555 78888776555554 89999987 99998888776788899986 455544433
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.017 Score=53.20 Aligned_cols=267 Identities=12% Similarity=0.125 Sum_probs=160.0
Q ss_pred EEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
+.+++..+......+ ..+ .....+...| ++..+.... ....+...+.. ...... ........-..+++++.+.
T Consensus 13 ~~v~~~~~~~~~~~~-~~~-~~~~~v~~~~--~g~~~~v~~~~~~~~~~~~~~-~n~~~~-~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAI-SLG-RGPGGVAVNP--DGTQVYVANSGSNDVSVIDAT-SNTVTQ-SLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEe-ecC-CCCceeEEcC--ccCEEEEEeecCceeeecccc-cceeee-eccCCCccccceeeCCCCC
Confidence 666666555544444 222 2455667777 664444333 22245555443 111111 0111113345788899887
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe--CCCeEEEEEcCCCccCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~ 241 (471)
+.++....++.|.+.|.++.......... .....++++|+++...++-. .++.+.+.|..+.+....
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeec-----------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 77777777899999998877766655532 14578999999544444444 368899999888765432
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
. ..+ ..+ ..++++|+|..+.... ++.+.++|.........
T Consensus 156 ~--------------~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~---------------------- 197 (381)
T COG3391 156 I--------------PVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRG---------------------- 197 (381)
T ss_pred E--------------ecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecc----------------------
Confidence 1 111 122 7899999999777666 66899999655321100
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC---CeEEEEEccCCeeeEEecCCCc-ceEEEEEcC
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRH-VVNCIEPHP 395 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~h~~-~v~~~~~s~ 395 (471)
.......-... ...+.+ +|+|+++...... +.+...|..++.....-..-.. ....+..+|
T Consensus 198 -----------~~~~~~~~~~~---P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 198 -----------SVGSLVGVGTG---PAGIAV-DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred -----------ccccccccCCC---CceEEE-CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 00000111111 234555 9999977655433 5899999988877654211111 566789999
Q ss_pred CCCEEEEeec-CCcEEEecCCCCCCcc
Q 012064 396 HSTVLASSGI-ESDIKILTPNAADRAT 421 (471)
Q Consensus 396 ~~~~l~s~~~-dg~i~iw~~~~~~~~~ 421 (471)
+|..+..... .+.+.+-|..+.....
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceee
Confidence 9998877744 4788888888765533
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.90 E-value=0.02 Score=53.13 Aligned_cols=52 Identities=10% Similarity=0.198 Sum_probs=37.4
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCC-CcceEEEEEcCCC
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHS 397 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~ 397 (471)
+..++. ||+|+++|.-..+|.+.+....-.+....+... ......+.|.-+.
T Consensus 219 i~~iav-Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 219 IIKIAV-SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred eEEEEE-CCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 888998 999999999999999999876555555555433 2355566665543
No 363
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=5.9e-05 Score=42.98 Aligned_cols=36 Identities=44% Similarity=0.755 Sum_probs=32.8
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778999999999999999999999999999996
No 364
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.83 E-value=0.024 Score=51.95 Aligned_cols=293 Identities=14% Similarity=0.190 Sum_probs=148.5
Q ss_pred CCEEEEecCCCeEEEEECCCCceE---EEeecCCCcceeEEEEecC---CCCeEEEEEeCCCeEEEEeccccCcc-----
Q 012064 73 GDILISGSDDRRVILWDWKTERVK---LSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGGV----- 141 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~----- 141 (471)
...+++||..|.++||+...++.. .-+...-..+|..+..-++ .+...|+. -.-..+.+|.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998554311 1111345568888876543 12334444 44567888887433221
Q ss_pred --eeeEeeceeee--EEEEEEcc----CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 142 --ETKLLGKHQGR--AHKLAIEP----GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 142 --~~~~~~~~~~~--v~~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
.......|.-. ...+++-| .+...+.+-+-||.+.+|+-+.-.....+.. ..-...++|.|
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-----------~llPgPl~Y~~ 184 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-----------FLLPGPLCYCP 184 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----------CCCCcCeEEee
Confidence 11223333322 22233222 3246788899999999998655432222221 11124577888
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCccCCCCCC--------CCCCCcCCCCcc--cCCCccceEEEEEcCCCCeEEEeeCCc
Q 012064 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDF--------GQPADYFCPPNL--IGDEQVGITGLAFSDQSELLVSYNDEF 283 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (471)
. ...|++++.+..+.-|............. ....+...+.-. ....--.|..+.++.....++.-++..
T Consensus 185 ~-tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~ 263 (418)
T PF14727_consen 185 R-TDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERS 263 (418)
T ss_pred c-CCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecce
Confidence 7 56888888888899887643221100000 000001111111 111112233344443444555555556
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee-eCCC-CcEEEEe
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPK-CEYVVSG 361 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~-g~~l~~g 361 (471)
+...+-... ....+.+...........+.. ..++ +..++.+
T Consensus 264 Lf~l~~~G~-------------------------------------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~ 306 (418)
T PF14727_consen 264 LFCLKDNGS-------------------------------------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVG 306 (418)
T ss_pred EEEEcCCCe-------------------------------------EEEEEecCCceeeEEEEEeecccCCCCceEEEEE
Confidence 666654321 111222222221111111211 0222 2257888
Q ss_pred eCCCeEEEEEccCCeeeEEecCCCcce--EEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 362 SDCGRIFIWKKKGGELIRVIEADRHVV--NCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 362 ~~dg~v~iwd~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
+.++.+.||. ..+++..-+....+| .-..|..-...+++-+.+|.+.+-=+-+.
T Consensus 307 t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 307 THTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred ecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 8999999996 344443333322232 22233333458889999999998776553
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.83 E-value=6.9e-05 Score=42.68 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=34.4
Q ss_pred CeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
++....+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.80 E-value=0.0077 Score=53.65 Aligned_cols=262 Identities=12% Similarity=0.104 Sum_probs=115.1
Q ss_pred ECCCCceEEEeecCCCc-----ceeEEEEecCCCCeEEEEEeC-CC--eEEEEeccccCcceeeEeecee-eeEEEEEEc
Q 012064 89 DWKTERVKLSFHSGHND-----NVFQAKIMPFTDDRSIVTCAA-DG--QVRHAQILERGGVETKLLGKHQ-GRAHKLAIE 159 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~ 159 (471)
|..+|..+.++. .... -.+.=+|.+ ||+.|+.++. || .+.+.|+.+++..+. .... .......++
T Consensus 16 D~~TG~~VtrLT-~~~~~~h~~YF~~~~ft~--dG~kllF~s~~dg~~nly~lDL~t~~i~QL---Tdg~g~~~~g~~~s 89 (386)
T PF14583_consen 16 DPDTGHRVTRLT-PPDGHSHRLYFYQNCFTD--DGRKLLFASDFDGNRNLYLLDLATGEITQL---TDGPGDNTFGGFLS 89 (386)
T ss_dssp -TTT--EEEE-S--TTS-EE---TTS--B-T--TS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-
T ss_pred CCCCCceEEEec-CCCCcccceeecCCCcCC--CCCEEEEEeccCCCcceEEEEcccCEEEEC---ccCCCCCccceEEe
Confidence 566777766662 2221 223346777 8877666554 54 566677777665543 2222 223346677
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE--cCCCCceEEEEe---CC---------
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNANLFAVAG---SD--------- 225 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~---~d--------- 225 (471)
|+++.+ +-...+..++-.|+++.+....+...+. .+....| +.+ +..++-.- .|
T Consensus 90 ~~~~~~-~Yv~~~~~l~~vdL~T~e~~~vy~~p~~----------~~g~gt~v~n~d-~t~~~g~e~~~~d~~~l~~~~~ 157 (386)
T PF14583_consen 90 PDDRAL-YYVKNGRSLRRVDLDTLEERVVYEVPDD----------WKGYGTWVANSD-CTKLVGIEISREDWKPLTKWKG 157 (386)
T ss_dssp TTSSEE-EEEETTTEEEEEETTT--EEEEEE--TT----------EEEEEEEEE-TT-SSEEEEEEEEGGG-----SHHH
T ss_pred cCCCeE-EEEECCCeEEEEECCcCcEEEEEECCcc----------cccccceeeCCC-ccEEEEEEEeehhccCccccHH
Confidence 887544 4344556889999999877666654321 2222333 333 33333211 00
Q ss_pred ----------CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEeeCC---c--EEEEec
Q 012064 226 ----------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE---F--IYLFTQ 289 (471)
Q Consensus 226 ----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~---~--i~i~d~ 289 (471)
..|.-.|+.+++. .........+..+.|+|.. .+|+.|.+| . -++|-+
T Consensus 158 f~e~~~a~p~~~i~~idl~tG~~----------------~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i 221 (386)
T PF14583_consen 158 FREFYEARPHCRIFTIDLKTGER----------------KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI 221 (386)
T ss_dssp HHHHHHC---EEEEEEETTT--E----------------EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE
T ss_pred HHHHHhhCCCceEEEEECCCCce----------------eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEE
Confidence 1233334444331 1222234567788899865 455555554 2 367766
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE-----eeCC
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-----GSDC 364 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~-----g~~d 364 (471)
+... .....+..+... .+..=.||.|||..|.. ++.+
T Consensus 222 ~~dg-------------------------------------~~~~~v~~~~~~-e~~gHEfw~~DG~~i~y~~~~~~~~~ 263 (386)
T PF14583_consen 222 NTDG-------------------------------------SNVKKVHRRMEG-ESVGHEFWVPDGSTIWYDSYTPGGQD 263 (386)
T ss_dssp ETTS----------------------------------------EESS---TT-EEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred EcCC-------------------------------------CcceeeecCCCC-cccccccccCCCCEEEEEeecCCCCc
Confidence 5431 111111112111 13333346999987764 2334
Q ss_pred CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCC----------------cEEEecCCCCCCcccCc
Q 012064 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES----------------DIKILTPNAADRATLPT 424 (471)
Q Consensus 365 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg----------------~i~iw~~~~~~~~~~~~ 424 (471)
..|.-+|+.+++....... .....+--++||++++-=+.|. -|++++++.+....+..
T Consensus 264 ~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 264 FWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR 337 (386)
T ss_dssp EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE
T ss_pred eEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee
Confidence 5677788888765432221 2345666688998886444432 45667777655544433
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.03 Score=51.61 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=156.0
Q ss_pred cEEEEEEcCCCCEEEEec-CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeE-EEEEeCCCeEEEEeccccCc
Q 012064 63 CVNTVSFNTDGDILISGS-DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~ 140 (471)
....+...|++..+.... ....+..-+.. ..........-...-..++.++ .+.. ++....++.|.+.|......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~--~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNP--AGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCC--CCCeEEEecCCCCeEEEEcCcccce
Confidence 456677888885444333 22245555544 2222221111112334667777 6664 44555568999999766655
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEe--cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
....... .....++++|+++++.++-. .++.+.+.|..+++........ ..+ ..++++|++...
T Consensus 109 ~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG----------~~P-~~~a~~p~g~~v 174 (381)
T COG3391 109 LGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG----------NTP-TGVAVDPDGNKV 174 (381)
T ss_pred eeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC----------CCc-ceEEECCCCCeE
Confidence 4432222 25678999999976666555 4789999999988877764321 112 789999995445
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC----CcEEEEecCCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLG 294 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~i~i~d~~~~~~ 294 (471)
.++-..++.+.+.|........ ... .. ..........+.++|+|.++....+ +.+...|..++..
T Consensus 175 yv~~~~~~~v~vi~~~~~~v~~-~~~---------~~-~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSVVR-GSV---------GS-LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEEecCCCeEEEEeCCCcceec-ccc---------cc-ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 5555588999999977665331 000 00 0011223467889999987665542 3677777765421
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEcc
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK 373 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~ 373 (471)
... ....... ....+.. +|+|+++..... .+.+.+.|..
T Consensus 244 ~~~-------------------------------------~~~~~~~--~~~~v~~-~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 244 TAT-------------------------------------DLPVGSG--APRGVAV-DPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEe-------------------------------------ccccccC--CCCceeE-CCCCCEEEEEecCCCeEEEEeCC
Confidence 110 0011110 1334555 999998888744 4889999988
Q ss_pred CCeeeEEecCCCc---ceEEEEEcCC
Q 012064 374 GGELIRVIEADRH---VVNCIEPHPH 396 (471)
Q Consensus 374 ~~~~~~~~~~h~~---~v~~~~~s~~ 396 (471)
+............ .+..+++.+.
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 284 TDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCceeeeecccccccccceeccceee
Confidence 8777665543332 3555555544
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.75 E-value=0.029 Score=50.48 Aligned_cols=136 Identities=15% Similarity=0.093 Sum_probs=80.7
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCC-----CeEEEEEeC----------CCeEEEEecccc----Cccee
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAA----------DGQVRHAQILER----GGVET 143 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~----------dg~i~iwd~~~~----~~~~~ 143 (471)
..|++.|..+.+.+..+.-.....+.+++...+.+ ..+++.|.. .|.|.++++... .....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46889998888877666444455666665544322 467777643 289999999874 12222
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc-cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
..-....++|++++-. ++ +++ .+.++.|.+|++...+ ....-... ....+.++... ++++++|
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv--~~~g~~l~v~~l~~~~~l~~~~~~~---------~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLV--VAVGNKLYVYDLDNSKTLLKKAFYD---------SPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEE--EEETTEEEEEEEETTSSEEEEEEE----------BSSSEEEEEEE---TTEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEE--EeecCEEEEEEccCcccchhhheec---------ceEEEEEEecc---ccEEEEE
Confidence 2223456788888777 33 433 3345789999999887 33322211 11234555544 3477777
Q ss_pred eCCCeEEEEEcC
Q 012064 223 GSDEYTRLYDIR 234 (471)
Q Consensus 223 ~~dg~i~i~d~~ 234 (471)
.....+.++..+
T Consensus 146 D~~~sv~~~~~~ 157 (321)
T PF03178_consen 146 DAMKSVSLLRYD 157 (321)
T ss_dssp ESSSSEEEEEEE
T ss_pred EcccCEEEEEEE
Confidence 776667766443
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.74 E-value=0.04 Score=51.70 Aligned_cols=238 Identities=15% Similarity=0.155 Sum_probs=124.4
Q ss_pred CCCCCCCcEEEEec-CC----CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE
Q 012064 4 ASNNNNNKRARTSV-DK----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 4 ~~~~~~~~~l~~~~-~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s 78 (471)
..++|+++++|.+- .. ..+++.|+++|+.+. ..+..- .-..+.|.+|++.|+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--------------------d~i~~~--~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--------------------DGIENP--KFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--------------------EEEEEE--ESEEEEECTTSSEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--------------------Cccccc--ccceEEEeCCCCEEEE
Confidence 45789999988652 22 469999999997763 122211 1123999999887765
Q ss_pred ecC-----------CCeEEEEECCCCceE-EEeecCCCc-c-eeEEEEecCCCCeEEEEEeCC----CeEEEEecccc--
Q 012064 79 GSD-----------DRRVILWDWKTERVK-LSFHSGHND-N-VFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER-- 138 (471)
Q Consensus 79 ~~~-----------d~~i~iwd~~~~~~~-~~~~~~~~~-~-v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~-- 138 (471)
... ...|+.|.+.+.... ..+...... . ...+..++ |+++++..... ..+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCC
Confidence 543 234888888776532 122233222 2 56788888 99988754332 34677777654
Q ss_pred -CcceeeEeeceeeeE-EEEEEccCCCcEEEEEe---cCCeEEEEeccCCccc--e-eeeecccCCcCcceeeeeeEEEE
Q 012064 139 -GGVETKLLGKHQGRA-HKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAAT--E-LFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 139 -~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
...... +......+ ..+... .+ .+++... ..+.|.-.++...... . .+.... ....+..+.
T Consensus 265 ~~~~~~~-l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~--------~~~~l~~~~ 333 (414)
T PF02897_consen 265 PDAKPKL-LSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED--------EDVSLEDVS 333 (414)
T ss_dssp SS-SEEE-EEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S--------SSEEEEEEE
T ss_pred CcCCcEE-EeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCC--------CceeEEEEE
Confidence 122222 33233333 333333 33 4444442 2467777788776641 1 111100 112455555
Q ss_pred EcCCCCceEEEEeCCC--eEEEEEcC-CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE-E-ee---CC
Q 012064 211 IDPRNANLFAVAGSDE--YTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV-S-YN---DE 282 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg--~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~-~~---~~ 282 (471)
... +.+++....++ .|+++++. ..... .......+.|..+...+++..+. . .+ -.
T Consensus 334 ~~~--~~Lvl~~~~~~~~~l~v~~~~~~~~~~---------------~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~ 396 (414)
T PF02897_consen 334 LFK--DYLVLSYRENGSSRLRVYDLDDGKESR---------------EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPP 396 (414)
T ss_dssp EET--TEEEEEEEETTEEEEEEEETT-TEEEE---------------EEESSSSSEEEEEES-TT-SEEEEEEEETTEEE
T ss_pred EEC--CEEEEEEEECCccEEEEEECCCCcEEe---------------eecCCcceEEeccCCCCCCCEEEEEEeCCCCCC
Confidence 543 35666666665 47788887 33211 11111234456666666665433 2 22 23
Q ss_pred cEEEEecCCCC
Q 012064 283 FIYLFTQDMGL 293 (471)
Q Consensus 283 ~i~i~d~~~~~ 293 (471)
+++.||+.+++
T Consensus 397 ~~y~~d~~t~~ 407 (414)
T PF02897_consen 397 TVYRYDLATGE 407 (414)
T ss_dssp EEEEEETTTTC
T ss_pred EEEEEECCCCC
Confidence 68888888753
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.73 E-value=0.021 Score=51.48 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=90.1
Q ss_pred CCEEEEecC----------CCeEEEEECCCC-----ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc
Q 012064 73 GDILISGSD----------DRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (471)
Q Consensus 73 g~~l~s~~~----------d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 137 (471)
..+|+.|.. .|.|.++++... +..........++|++++-. ++. |+.+. .+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~---~~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF---NGR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE---TTE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh---CCE-EEEee-cCEEEEEEccC
Confidence 467777643 289999999884 22222224567889998776 455 44443 47899999988
Q ss_pred cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
.+.............+.++... + .+++.|.....+.++..+.... ...+... . ....+.++.|-+++
T Consensus 117 ~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~-------~~~~v~~~~~l~d~- 184 (321)
T PF03178_consen 117 SKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNKLILVARD-Y-------QPRWVTAAEFLVDE- 184 (321)
T ss_dssp TSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-EEEEEEE-S-------S-BEEEEEEEE-SS-
T ss_pred cccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCEEEEEEec-C-------CCccEEEEEEecCC-
Confidence 8722222222223356666555 3 3678888888888886554221 2222211 1 23468888888774
Q ss_pred ceEEEEeCCCeEEEEEcCC
Q 012064 217 NLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~ 235 (471)
..++.+..+|.+.++....
T Consensus 185 ~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 185 DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SEEEEEETTSEEEEEEE-S
T ss_pred cEEEEEcCCCeEEEEEECC
Confidence 5899999999999998863
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0023 Score=62.80 Aligned_cols=148 Identities=9% Similarity=0.143 Sum_probs=90.6
Q ss_pred CceEEE-EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC------CCCeEEEeeCCcEEEEe
Q 012064 216 ANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD------QSELLVSYNDEFIYLFT 288 (471)
Q Consensus 216 ~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~~~i~i~d 288 (471)
.++|+. ......|+-.|+..++.+....... ..+|..++-.. +.+.++..+++.+..||
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~--------------~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHD--------------DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCC--------------CcceeEecccccccccCCCceEEEECCCceEEec
Confidence 344443 3356779999999998765544321 22233333211 23456777788999999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
.+-...... ......+... . ...|++- +.+| +||.|+.+|.||
T Consensus 559 pR~~~~k~v--------------------------------~~~~k~Y~~~-~--~Fs~~aT-t~~G-~iavgs~~G~IR 601 (794)
T PF08553_consen 559 PRLSGNKLV--------------------------------DSQSKQYSSK-N--NFSCFAT-TEDG-YIAVGSNKGDIR 601 (794)
T ss_pred cCCCCCcee--------------------------------eccccccccC-C--CceEEEe-cCCc-eEEEEeCCCcEE
Confidence 875310000 0001112111 1 2566665 5555 799999999999
Q ss_pred EEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+||-...+....+.+-..+|.++..+.||++++..+ +..+.+++..
T Consensus 602 Lyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 602 LYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred eecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 999543344455667778999999999999877665 4567777753
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.72 E-value=0.027 Score=49.49 Aligned_cols=250 Identities=11% Similarity=0.064 Sum_probs=127.2
Q ss_pred CCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC
Q 012064 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
.++.|+.|..+| +.+++......... . .+...|..+...|+-+ .+++- .|+.++++++..-.............
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~--i-~~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTR--I-LKLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcccee--E-eecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccccccccc
Confidence 678899998888 88998832222211 1 1233499999999874 33433 35999999988765544211000000
Q ss_pred ----cCcceeeeeeEEEE--EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc
Q 012064 197 ----RRNYMTVVNLNAIA--IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (471)
Q Consensus 197 ----~~~~~~~~~v~~~~--~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (471)
.........+..++ -.+.+...+++ .....|.+|.......... ...... .-...+..++|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~----------~~~ke~-~lp~~~~~i~~~ 147 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFS----------KLLKEI-SLPDPPSSIAFL 147 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCccccc----------ceeEEE-EcCCCcEEEEEe
Confidence 00000222344444 12333344444 4455899888876321100 001111 113567888888
Q ss_pred CCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee
Q 012064 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (471)
Q Consensus 271 ~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (471)
+..++.+..+...+.|+.++....-...... ............ ++..+.
T Consensus 148 --~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~--------------------------~~~~~~~~~~~~--~~~~~~- 196 (275)
T PF00780_consen 148 --GNKICVGTSKGFYLIDLNTGSPSELLDPSDS--------------------------SSSFKSRNSSSK--PLGIFQ- 196 (275)
T ss_pred --CCEEEEEeCCceEEEecCCCCceEEeCccCC--------------------------cchhhhcccCCC--ceEEEE-
Confidence 5578888788899999986532211100000 000000000111 122222
Q ss_pred eCCCCcEEEEeeCCCeEEEEEccCCeeeE--EecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccC
Q 012064 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP 423 (471)
Q Consensus 351 ~s~~g~~l~~g~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 423 (471)
-+++.+|++-. ..-.+.|. .|+..+ .++- ...+.++++ ...+|+..+. +.|-||++.+++..+..
T Consensus 197 -~~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 197 -LSDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred -eCCceEEEEec--ceEEEEcC-CCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEE
Confidence 24456776542 33334444 444332 2222 224556666 3457777765 55999999999875443
No 373
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.72 E-value=0.018 Score=48.64 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=110.0
Q ss_pred CCCcEEEEecCCC--eEEEEEcccCccccccccceecccccceeeeeeeEEeccc--cccEEEEEEcCCCCEEEEecCCC
Q 012064 8 NNNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH--RGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 8 ~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
.++.++-+.+.-| .|+.+|+++|+...+ ..+... ...| ....| +...-.-.++
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-------------------~~l~~~~FgEGi---t~~~d-~l~qLTWk~~ 110 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-------------------VPLPPRYFGEGI---TILGD-KLYQLTWKEG 110 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEE-------------------EE-TTT--EEEE---EEETT-EEEEEESSSS
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-------------------EECCccccceeE---EEECC-EEEEEEecCC
Confidence 4566666666555 899999999887631 112111 1222 22222 3333334678
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee---eeEEEEEEcc
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEP 160 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~ 160 (471)
...+||..+.+.+.++. ..+.=+.++. |++.|+.+.....+.++|..+.+........... ..++-+.+-
T Consensus 111 ~~f~yd~~tl~~~~~~~--y~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFP--YPGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEEEETTTTEEEEEEE---SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred eEEEEccccceEEEEEe--cCCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 99999999998888873 3345566663 7888888888889999998877665543333222 235556665
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc-----CcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
+| .+.+=.-....|...|..+|+....+........ .......-.+.++++|..+.++++|-.
T Consensus 184 ~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NG-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 45 4555555667888999999998877755433211 011123457899999997777777643
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=9.4e-05 Score=68.02 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEE-EEEEcCCCCEEEEecCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN-TVSFNTDGDILISGSDD 82 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~~g~~l~s~~~d 82 (471)
+.++|.-.++|.+..+|.+.+...+ -+.+ .++.-|...++ +++|.|||++||.|-.|
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRl---------------------wtip~p~~~v~~sL~W~~DGkllaVg~kd 83 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRL---------------------WTIPIPGENVTASLCWRPDGKLLAVGFKD 83 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-ccee---------------------EeccCCCCccceeeeecCCCCEEEEEecC
Confidence 5578888899999999999888877 3333 45665676777 99999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEec
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 114 (471)
|+|++-|++++..+..+...-...|.++-|.|
T Consensus 84 G~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 84 GTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999999988875445667888888864
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00022 Score=65.69 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=77.7
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCccee-EEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF-QAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
.-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++ .-|...++ +++|.| ||+.|+.|-.||+|++.|++.+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecC--CCCEEEEEecCCeEEEEEccCCC
Confidence 3457889999999999999999999999987 7777888 44666666 999999 99999999999999999999887
Q ss_pred cceeeEeeceeeeEEEEEEcc
Q 012064 140 GVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.+... .......|.++-|.+
T Consensus 96 ~l~~~-~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSF-LFSVETDISKGIWDR 115 (665)
T ss_pred ceecc-ccccccchheeeccc
Confidence 76542 233455677777764
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.70 E-value=0.037 Score=50.00 Aligned_cols=251 Identities=14% Similarity=0.077 Sum_probs=109.6
Q ss_pred CCcEEEEec-CCCeEEEEEcccCccccccccceecccccceeeeeeeEEecc---cc----ccEEEEEEcCCCCEEEEec
Q 012064 9 NNKRARTSV-DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HR----GCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 9 ~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---h~----~~V~~~~~s~~g~~l~s~~ 80 (471)
+.++|++.+ ..+.|.|.|+.+.-..+ ++.+.+.. +. ..-..+..-|+|+.++|+=
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-----------------~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-----------------RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS------------------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-----------------ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEec
Confidence 456666555 88999999988433221 11122221 11 2223344457888888752
Q ss_pred ------CCCeEEEEECCCCceEEEeecC--CCcceeEEEEecCCCCeEEEEEeC--------------------CCeEEE
Q 012064 81 ------DDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAA--------------------DGQVRH 132 (471)
Q Consensus 81 ------~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~--------------------dg~i~i 132 (471)
.-|-+.+.|-++.+........ ...--+.+-|.| ..+.++|... ..++.+
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~v 226 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHV 226 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEE
Confidence 2256888888877776655332 233456778888 7777777642 247999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEEc--cCCCcEEEEEecCCeEEEEec-cCCccc--eeeeecccCCcCcc-------
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDL-RTGAAT--ELFTCRPIDDRRNY------- 200 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~iwd~-~~~~~~--~~~~~~~~~~~~~~------- 200 (471)
||+.+.+.++...+.........+.|. |+...-|+.+.-...|..|-- +.++.. +.+....... ++.
T Consensus 227 WD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v-~~~~lp~ml~ 305 (461)
T PF05694_consen 227 WDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV-EGWILPEMLK 305 (461)
T ss_dssp EETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE---SS---GGGG
T ss_pred EECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc-Cccccccccc
Confidence 999999888876665444456667765 555455565555566666644 333321 1121111100 000
Q ss_pred ---eeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc---cCCCCCCCCCCCcCCCCccc-CCCccceEEEEEcCCC
Q 012064 201 ---MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK---WDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSDQS 273 (471)
Q Consensus 201 ---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 273 (471)
....-++.+..|.|+..+.++.-..|.++.||+.... +..+..++..+....+.... ..-.+...-+..|-||
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DG 385 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDG 385 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTS
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCC
Confidence 0134578999999965555666689999999997643 22222222211111000000 1112345677888898
Q ss_pred CeEEEe
Q 012064 274 ELLVSY 279 (471)
Q Consensus 274 ~~l~~~ 279 (471)
+.|...
T Consensus 386 kRlYvT 391 (461)
T PF05694_consen 386 KRLYVT 391 (461)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 877654
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.69 E-value=0.041 Score=50.36 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=60.1
Q ss_pred EEEEcCCCCEEEEecCCCeEEE---EECCC-C----ceEEEee--cCCC--cceeEEEEecC---------CCCeEEEEE
Q 012064 66 TVSFNTDGDILISGSDDRRVIL---WDWKT-E----RVKLSFH--SGHN--DNVFQAKIMPF---------TDDRSIVTC 124 (471)
Q Consensus 66 ~~~~s~~g~~l~s~~~d~~i~i---wd~~~-~----~~~~~~~--~~~~--~~v~~~~~~~~---------~~~~~l~s~ 124 (471)
.++.+|++++||.|..+..+.+ |+... + ....... ..+. ..|+++.+.|. .|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678999999999988776655 64311 1 1111111 1122 57888888775 356889999
Q ss_pred eCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 125 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
..+|.+++|.. ++..+.. -.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~--Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLS--QLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHH--HhcCccceEEEEec
Confidence 99999999986 4444433 23377788777765
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.033 Score=49.05 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=104.4
Q ss_pred EEcCCCC-EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEe
Q 012064 68 SFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL 146 (471)
Q Consensus 68 ~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 146 (471)
.|.++.. ++.+--..+.|.-|+..+++. ..+ .+.+.+.++.... .+..|+++.. .+.+++.+++..+.....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~--~~p~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVF--PSPGGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEE--ECCCCcccceeec--CCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 4667766 445555678899999887764 333 2333445554443 5556666643 356667644444211101
Q ss_pred e---ceeeeEEEEEEccCCCcEEEEEecC------------CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 147 G---KHQGRAHKLAIEPGSPHVFYTCGED------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 147 ~---~~~~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
. ......+...+.|+|. + ..++.. |.++.+|. .+...+.... +-..-+.++|
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~-~-wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~----------~~~~~NGla~ 170 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGR-I-WFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD----------DLTIPNGLAF 170 (307)
T ss_pred ccCCCCcCCCCceeEcCCCC-E-EEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC----------cEEecCceEE
Confidence 1 1123456788889984 3 333332 33444443 2333332221 2334689999
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC-cEEEEec
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQ 289 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~d~ 289 (471)
|||+..+.++=+..+.|.-|++...... . .............+..-.++...+|.+.+++. .+ .|..|+.
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~-~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGP-------I-GGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCc-------c-CCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 9995444444455688888887641100 0 00011111222345556677788888775444 33 7999987
Q ss_pred C
Q 012064 290 D 290 (471)
Q Consensus 290 ~ 290 (471)
+
T Consensus 243 d 243 (307)
T COG3386 243 D 243 (307)
T ss_pred C
Confidence 6
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.58 E-value=0.0083 Score=42.88 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=66.2
Q ss_pred eeEEEEecCCCC--eEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc
Q 012064 107 VFQAKIMPFTDD--RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (471)
Q Consensus 107 v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (471)
|+++++..+... +.|++|+.|..||+|+-. +.+.. . ...+.|.++.-...+ .|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i-~e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--I-TETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--E-ecccceEEEEEcCCC--EEEEEecCCEEEEEeCcc--
Confidence 667777765222 689999999999999842 22222 2 244667777777665 478899999999997532
Q ss_pred cceeeeecccCCcCcceeeeeeEEEEEc---CCCCceEEEEeCCCeEE
Q 012064 185 ATELFTCRPIDDRRNYMTVVNLNAIAID---PRNANLFAVAGSDEYTR 229 (471)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~ 229 (471)
.....+ ....+.++++. -|+-.-|++|-.+|.|-
T Consensus 73 RlWRiK-----------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIK-----------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeec-----------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222222 22234555443 33444688899998874
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0023 Score=58.05 Aligned_cols=144 Identities=12% Similarity=0.138 Sum_probs=92.0
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC--------eEEEeeCCcEEEEe
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--------LLVSYNDEFIYLFT 288 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~~~~~~~i~i~d 288 (471)
-++..+.....++-.|++.++.+...++.. .|+-+.+.|+.+ .|+.-++..+.-||
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFED----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccC----------------CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 345556666778888999988766544421 155556666543 46666788899999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc--eeEeeeeeeeCCCCcEEEEeeCCCe
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN--CVTVKGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~s~~g~~l~~g~~dg~ 366 (471)
.+-... ..+...++|.- .....|.+- . ...++++|+.+|.
T Consensus 411 pRv~~~------------------------------------~kl~~~q~kqy~~k~nFsc~aT-T-~sG~IvvgS~~Gd 452 (644)
T KOG2395|consen 411 PRVQGK------------------------------------NKLAVVQSKQYSTKNNFSCFAT-T-ESGYIVVGSLKGD 452 (644)
T ss_pred ccccCc------------------------------------ceeeeeeccccccccccceeee-c-CCceEEEeecCCc
Confidence 873211 01111122211 111444443 3 3448999999999
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
||+||.........+++-..+|..+..+.||++++..+ +..+.+-++.
T Consensus 453 IRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 453 IRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 99999844445566788888999999999999776655 4556665554
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.55 E-value=0.003 Score=62.10 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=98.3
Q ss_pred CeEEEEE-eCCCeEEEEeccccCcceeeEeeceeee-EEEEEEccC----CCcEEEEEecCCeEEEEeccCCccceeeee
Q 012064 118 DRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGR-AHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (471)
Q Consensus 118 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (471)
.++|+.- .....++-.|++.++.+.. +..+... |..++-... .+.-.+.|-.+..+..||+|-.... ...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~e--W~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~- 568 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEE--WKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVD- 568 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEE--eecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eee-
Confidence 3444433 3456788888888887766 5545433 444432210 1123467888889999999865311 111
Q ss_pred cccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC
Q 012064 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (471)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (471)
. ....+.......|++-..+| +||+|+.+|.||+||-- ++ .....+.+-..+|..+..+.
T Consensus 569 ~---~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~--------------~AKT~lp~lG~pI~~iDvt~ 628 (794)
T PF08553_consen 569 S---QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK--------------RAKTALPGLGDPIIGIDVTA 628 (794)
T ss_pred c---cccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch--------------hhhhcCCCCCCCeeEEEecC
Confidence 0 01122345567888888763 89999999999999942 22 12344455568899999999
Q ss_pred CCCeEEEeeCCcEEEEecC
Q 012064 272 QSELLVSYNDEFIYLFTQD 290 (471)
Q Consensus 272 ~~~~l~~~~~~~i~i~d~~ 290 (471)
||+++++.++..+.+++..
T Consensus 629 DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 629 DGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CCcEEEEeecceEEEEEEe
Confidence 9999999999999999864
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.042 Score=53.31 Aligned_cols=152 Identities=12% Similarity=0.135 Sum_probs=85.2
Q ss_pred ccEEEEEEcCCCCEEEEec------CCC--eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC------
Q 012064 62 GCVNTVSFNTDGDILISGS------DDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------ 127 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------ 127 (471)
..+...++||||+.+|..- .|+ .|.+++.. +.. ..+..+. ......|+| +|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWsp--DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSL--DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECC--CCCceEEEecCcceEEE
Confidence 4678999999999887554 233 55555642 332 3443333 378899999 98877776532
Q ss_pred ------CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEE---EeccCCccceeeee-cccCCc
Q 012064 128 ------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH---FDLRTGAATELFTC-RPIDDR 197 (471)
Q Consensus 128 ------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~-~~~~~~ 197 (471)
+.+.+.++..++... .....|..+.|+|||.++++.. ++.|++ -....+. ..+.. .....
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~--~~l~~~~~l~~- 493 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ--YALTNPREVGP- 493 (591)
T ss_pred eccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc--eeecccEEeec-
Confidence 223322333222211 2345799999999997655544 467776 4434443 11110 00000
Q ss_pred CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
. ....+.++.|.++ +. |+++..++.-.+|.+.
T Consensus 494 -~--l~~~~~~l~W~~~-~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 494 -G--LGDTAVSLDWRTG-DS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred -c--cCCccccceEecC-CE-EEEEecCCCCceEEEe
Confidence 0 1123577899998 44 4455555555555543
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.077 Score=45.05 Aligned_cols=220 Identities=12% Similarity=0.109 Sum_probs=118.8
Q ss_pred eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
..+-...+.++.|+|+... +++......-.++=-.+|+.+..+..... .....+.+... +.+.++--.+
T Consensus 81 i~g~~~nvS~LTynp~~rt-LFav~n~p~~iVElt~~GdlirtiPL~g~---------~DpE~Ieyig~-n~fvi~dER~ 149 (316)
T COG3204 81 ILGETANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDLIRTIPLTGF---------SDPETIEYIGG-NQFVIVDERD 149 (316)
T ss_pred cccccccccceeeCCCcce-EEEecCCCceEEEEecCCceEEEeccccc---------CChhHeEEecC-CEEEEEehhc
Confidence 4455566999999999954 55555555555665567777777765432 23456667665 5666666678
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCCCCcc
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVS 304 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~ 304 (471)
+.+.++.+........... .. .+.......+.....++|+|....|..+-+. -+.||............
T Consensus 150 ~~l~~~~vd~~t~~~~~~~----~~-i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----- 219 (316)
T COG3204 150 RALYLFTVDADTTVISAKV----QK-IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----- 219 (316)
T ss_pred ceEEEEEEcCCccEEeccc----eE-EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc-----
Confidence 8888887765431111000 00 0111122225678899999998888777744 46666554321000000
Q ss_pred ccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCC
Q 012064 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h 384 (471)
... + ......+.- ..+.++.|-.+.+.+++-+.+++.+.-.|. .|+.+..+.-+
T Consensus 220 ----------------~~~--~---~~~~~~~f~----~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~ 273 (316)
T COG3204 220 ----------------ASL--D---PTADRDLFV----LDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLT 273 (316)
T ss_pred ----------------ccc--C---cccccceEe----eccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEec
Confidence 000 0 000000000 115666762345667777888888888886 44444443221
Q ss_pred C---------cceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 385 R---------HVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 385 ~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
. .....++..++|.+.+ .|+-+..+.+.
T Consensus 274 ~g~~gL~~dipqaEGiamDd~g~lYI-vSEPnlfy~F~ 310 (316)
T COG3204 274 KGNHGLSSDIPQAEGIAMDDDGNLYI-VSEPNLFYRFT 310 (316)
T ss_pred cCCCCCcccCCCcceeEECCCCCEEE-EecCCcceecc
Confidence 1 1345677766665433 33444444443
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.29 E-value=0.025 Score=54.32 Aligned_cols=128 Identities=12% Similarity=0.107 Sum_probs=85.3
Q ss_pred eeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
.+....++...-....-+.-|.-++.-++-+....+.|||...+....+-.-...+.|.++.|...++++.+++.+....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 44444555544455666666666665555555668999999888754443224578999999988779999999999999
Q ss_pred EEEEecc-----ccC----cceeeEeecee-eeEEEEEEccCCCcEEEEEecCCeEEEEec
Q 012064 130 VRHAQIL-----ERG----GVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (471)
Q Consensus 130 i~iwd~~-----~~~----~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 180 (471)
|.++.-. ... .+....+..++ .+|.+..|.++| .+++ |+ ++.+.++|-
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVV-GS-GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEE-Ee-CCEEEEECC
Confidence 9988531 111 12222234444 689999999999 3433 32 456888874
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.26 E-value=0.029 Score=54.42 Aligned_cols=186 Identities=14% Similarity=0.140 Sum_probs=97.5
Q ss_pred CCCCCCCCCcEEEEec------CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCE
Q 012064 2 DDASNNNNNKRARTSV------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI 75 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~ 75 (471)
.+++.+|+++.+|.-. .|+.-.||-...+.... ....+. ..+.-.|+|||+.
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~--------------------~lt~g~--~~t~PsWspDG~~ 410 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV--------------------QVLEGH--SLTRPSWSLDADA 410 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce--------------------eeecCC--CCCCceECCCCCc
Confidence 3566789998876655 24444445433222111 122332 3788899999988
Q ss_pred EEEecCC------------CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE---EeccccCc
Q 012064 76 LISGSDD------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH---AQILERGG 140 (471)
Q Consensus 76 l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~ 140 (471)
|++.... +.+.+.++..++... ...+.|..+.|+| ||..++... +|.|.+ -....+..
T Consensus 411 lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va~Vvr~~~G~~ 483 (591)
T PRK13616 411 VWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSR--DGVRAAMII-GGKVYLAVVEQTEDGQY 483 (591)
T ss_pred eEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECC--CCCEEEEEE-CCEEEEEEEEeCCCCce
Confidence 8776432 223333333333211 2356799999999 999988766 477776 33223321
Q ss_pred ce--eeEee-ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceee-eecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 141 VE--TKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 141 ~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
.. ...+. .-...+.++.|..++. + +++..++.-.+|.+.-.-..... .... ....+..++-++.
T Consensus 484 ~l~~~~~l~~~l~~~~~~l~W~~~~~-L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n--------~~~~v~~vaa~~~-- 551 (591)
T PRK13616 484 ALTNPREVGPGLGDTAVSLDWRTGDS-L-VVGRSDPEHPVWYVNLDGSNSDALPSRN--------LSAPVVAVAASPS-- 551 (591)
T ss_pred eecccEEeecccCCccccceEecCCE-E-EEEecCCCCceEEEecCCccccccCCCC--------ccCceEEEecCCc--
Confidence 11 01122 2233468899999984 4 45555544444543322111111 1100 1335667776663
Q ss_pred ceEEEEeCCCeEE
Q 012064 217 NLFAVAGSDEYTR 229 (471)
Q Consensus 217 ~~l~~~~~dg~i~ 229 (471)
-++....+|.+.
T Consensus 552 -~iyv~~~~g~~~ 563 (591)
T PRK13616 552 -TVYVTDARAVLQ 563 (591)
T ss_pred -eEEEEcCCceEE
Confidence 344556666443
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.26 E-value=0.096 Score=50.87 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=88.7
Q ss_pred cCCCCEEEEecCC------CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-C-----eEEEEeccc
Q 012064 70 NTDGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-G-----QVRHAQILE 137 (471)
Q Consensus 70 s~~g~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g-----~i~iwd~~~ 137 (471)
+..+.+++.||.+ ..+..+|..+++-...........-.+++.. ++...++|+.| | ++..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE---CCEEEEEccccCCCcccceEEEecCCC
Confidence 3346677788776 3688899887754332222333444556665 67888888888 3 577888877
Q ss_pred cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC-----eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
+++.....+........ ++. -+| .+.++||.|| ++-.||.++.+....-.... .........+
T Consensus 359 ~~W~~~a~M~~~R~~~~-v~~-l~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--------~r~~~gv~~~- 426 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFG-VAV-LDG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--------RRSGHGVAVL- 426 (571)
T ss_pred CceeccCCccCccccce-eEE-ECC-EEEEEeccccccccccEEEecCCCCcccccCCCCc--------ceeeeEEEEE-
Confidence 77654322222222111 111 134 6888999886 47778877765433221110 1111122222
Q ss_pred CCCCceEEEEeCCC------eEEEEEcCCCccCCC
Q 012064 213 PRNANLFAVAGSDE------YTRLYDIRKYKWDGS 241 (471)
Q Consensus 213 p~~~~~l~~~~~dg------~i~i~d~~~~~~~~~ 241 (471)
++.+.++|+.++ .+..||..+.++...
T Consensus 427 --~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 427 --GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred --CCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 367778887554 578899888876543
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0056 Score=55.70 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=96.5
Q ss_pred EEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCc------EEEEEecCCeEEEEeccCCccceeeeecccCC
Q 012064 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH------VFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 123 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
++.....++-.|++.++.+.. +.-+.+ |.-+.+.|+.+. .-+.|-.|..|.-||++-.... .+...+.
T Consensus 351 ~~~~~~~l~klDIE~GKIVeE--Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~-- 424 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEE--WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQS-- 424 (644)
T ss_pred CCCCcCcceeeecccceeeeE--eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeec--
Confidence 444455677788888887766 554444 666777776421 1245677889999999844321 1111111
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeE
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (471)
..+.......|++-..+ -++++|+.+|.|++||. .+.. ....+++-..+|..+..+.+|++|
T Consensus 425 -kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdr-i~~~--------------AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 425 -KQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDR-IGRR--------------AKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred -cccccccccceeeecCC--ceEEEeecCCcEEeehh-hhhh--------------hhhcccccCCceeeEEeeccCcEE
Confidence 11224445677777665 38999999999999997 3321 233445557789999999999999
Q ss_pred EEeeCCcEEEEecCC
Q 012064 277 VSYNDEFIYLFTQDM 291 (471)
Q Consensus 277 ~~~~~~~i~i~d~~~ 291 (471)
++.++..+.+.+..-
T Consensus 487 l~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 487 LATCKTYLLLIDTLI 501 (644)
T ss_pred EEecccEEEEEEEec
Confidence 999999888887643
No 388
>PHA02713 hypothetical protein; Provisional
Probab=97.20 E-value=0.032 Score=54.16 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=45.3
Q ss_pred CCcEEEEeeCC------CeEEEEEccC---CeeeEEecCCCcceEEEEEcCCCCEEEEeecCC--cEEEecCCCCCCccc
Q 012064 354 KCEYVVSGSDC------GRIFIWKKKG---GELIRVIEADRHVVNCIEPHPHSTVLASSGIES--DIKILTPNAADRATL 422 (471)
Q Consensus 354 ~g~~l~~g~~d------g~v~iwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~i~iw~~~~~~~~~~ 422 (471)
+|+..+.|+.+ ..+..||..+ .+.+..+.........+.+ ++++.+.|+.|+ .+-.||+.+.+-..+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 56666677654 2467899875 3444444433333333333 778889999888 788899988877555
Q ss_pred Ccch
Q 012064 423 PTNI 426 (471)
Q Consensus 423 ~~~~ 426 (471)
...+
T Consensus 541 ~~~~ 544 (557)
T PHA02713 541 CHQH 544 (557)
T ss_pred hhhc
Confidence 4433
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.18 E-value=0.17 Score=45.71 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=47.9
Q ss_pred CCeeeecCCceeEeeeeeeeCC------CCcEEEEeeCCCeEEEEEccCCeeeE---E-ecCCCcceEEEEEcCCCCEEE
Q 012064 332 APQVYKGHRNCVTVKGVNFFGP------KCEYVVSGSDCGRIFIWKKKGGELIR---V-IEADRHVVNCIEPHPHSTVLA 401 (471)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~~s~------~g~~l~~g~~dg~v~iwd~~~~~~~~---~-~~~h~~~v~~~~~s~~~~~l~ 401 (471)
+...+..|.. +..+.|+.. .|+++++.-..+.|...++..+..+. . +......+..+++.|||.+++
T Consensus 245 P~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 245 PVFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp -SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred cceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 3445555544 556666322 46677777667888888887553321 2 233445899999999999999
Q ss_pred EeecCCcEE
Q 012064 402 SSGIESDIK 410 (471)
Q Consensus 402 s~~~dg~i~ 410 (471)
+.+.+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 888888875
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.16 E-value=0.31 Score=48.51 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=69.5
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCe----EEEEEeCCCeEEEEeccc
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR----SIVTCAADGQVRHAQILE 137 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iwd~~~ 137 (471)
+.++....+.+...++.++.++.+...++..+.............|.|+.++|..|++ .++.|..+..+.+.-...
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 4455555555666777787777777777776664333334456789999999854333 567777665555443322
Q ss_pred cCcceeeE-eec--eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 138 RGGVETKL-LGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 138 ~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
........ +.. -+..|.-..|-.+. ++|+++..||.+.-|-+..
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEc
Confidence 22211111 111 12234444555545 6788999999987665543
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.00093 Score=53.87 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCC-cceEEEEEcCCCCEEEEe--ecCCcEEEecCCCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTVLASS--GIESDIKILTPNAA 417 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~ 417 (471)
..++.+..++..||.||-|+++.++.+.....|. .++.....+..++.++.+ |.|..++.|++..-
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 3455678899999999999999998888877787 677777777777888888 88888999998753
No 392
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.09 E-value=0.21 Score=49.59 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=75.5
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccc-cceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASE-DLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
+.|+... |+.+.+||-+...+............. +...+.........-.-.|..+.+||+|++||..|..|...+ .
T Consensus 34 rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~-~ 111 (717)
T PF10168_consen 34 RNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVL-E 111 (717)
T ss_pred eeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEE-E
Confidence 3455444 789999998855543322222221111 111122211111223457999999999999999988774433 3
Q ss_pred CCC----------Cce--E-EEe-------ecCCCcceeEEEEecCC-CCeEEEEEeCCCeEEEEeccccC
Q 012064 90 WKT----------ERV--K-LSF-------HSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 90 ~~~----------~~~--~-~~~-------~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
+.. |+. . +.+ ...+...|..+.|+|.+ ++..|+.-..|+++|+||+....
T Consensus 112 LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 112 LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 321 111 1 111 12345689999999953 36888888899999999997544
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.08 E-value=0.0019 Score=38.29 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=30.2
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 95 (471)
...|.+++|+|..++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5554
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.16 Score=42.99 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=59.4
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCe-EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEec-----CCeEEEEe
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQ-VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-----DGLVQHFD 179 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd 179 (471)
.-..+.|+|. -..-++.+-.-|+ ..++|.................---.=.|+|||. +|+..-. .|.|-+||
T Consensus 69 R~Hgi~~~p~-~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 69 RGHGIAFHPA-LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccCCeecCCC-CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEe
Confidence 3446778872 3455666666664 4678887776655422211111122246899994 5565433 37899999
Q ss_pred ccCCc-cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 180 LRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 180 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
.+.+- .+..+.. +......+.+.+| +..++.+
T Consensus 147 ~r~~fqrvgE~~t----------~GiGpHev~lm~D-Grtlvva 179 (366)
T COG3490 147 AREGFQRVGEFST----------HGIGPHEVTLMAD-GRTLVVA 179 (366)
T ss_pred cccccceeccccc----------CCcCcceeEEecC-CcEEEEe
Confidence 88442 1222221 3345567888998 5666654
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.97 E-value=0.17 Score=49.28 Aligned_cols=191 Identities=18% Similarity=0.237 Sum_probs=106.2
Q ss_pred CCcEEEEecCCC------eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 9 NNKRARTSVDKA------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 9 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.+.+++.|+.++ .+..+|..+++... ...+. +...-.+++.. ++...++||.|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-------------------~a~m~-~~r~~~~~~~~-~~~lYv~GG~~ 342 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-------------------LAPMP-SPRCRVGVAVL-NGKLYVVGGYD 342 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-------------------cCCCC-cccccccEEEE-CCEEEEEcccc
Confidence 356677888774 77888888765442 11111 11122233333 56788889988
Q ss_pred ------CeEEEEECCCCceEEEeecCCC-cceeEEEEecCCCCeEEEEEeCCC-----eEEEEeccccCcceeeEeecee
Q 012064 83 ------RRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADG-----QVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 83 ------~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
.++..||..+++-.. ...-.. ..-..++.. +|...++|+.|| ++..||..+.+.........
T Consensus 343 ~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-- 416 (571)
T KOG4441|consen 343 SGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-- 416 (571)
T ss_pred CCCcccceEEEecCCCCceec-cCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccCCCCc--
Confidence 357788877666321 111111 111222222 788899999886 47788888777654321221
Q ss_pred eeEEEEEEc-cCCCcEEEEEecCC------eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 151 GRAHKLAIE-PGSPHVFYTCGEDG------LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 151 ~~v~~~~~~-~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
........ -++ ++.++||.++ .+..||..++........... ... ..++.- ++.+.+.|+
T Consensus 417 -~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~--------R~~-~g~a~~--~~~iYvvGG 483 (571)
T KOG4441|consen 417 -RRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR--------RSG-FGVAVL--NGKIYVVGG 483 (571)
T ss_pred -ceeeeEEEEECC-EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc--------ccc-ceEEEE--CCEEEEECC
Confidence 22222222 234 6788888553 577888888765443322111 111 123332 257888888
Q ss_pred CCCe-----EEEEEcCCCccC
Q 012064 224 SDEY-----TRLYDIRKYKWD 239 (471)
Q Consensus 224 ~dg~-----i~i~d~~~~~~~ 239 (471)
.|+. +..||..+.++.
T Consensus 484 ~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 484 FDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred ccCCCccceEEEEcCCCCcee
Confidence 7763 778888887653
No 396
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.045 Score=53.17 Aligned_cols=150 Identities=9% Similarity=0.130 Sum_probs=78.7
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC------------------
Q 012064 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG------------------ 128 (471)
Q Consensus 72 ~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------------------ 128 (471)
+|+..+.||.++ ++..||..+.+-...-...+...-.+++ .- ++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EE--CCEEEEEeCCCccccccccccccccccccc
Confidence 677778888754 4788998765421110001111111222 22 777778777542
Q ss_pred -----eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC------CeEEEEeccC-CccceeeeecccCC
Q 012064 129 -----QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRT-GAATELFTCRPIDD 196 (471)
Q Consensus 129 -----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~ 196 (471)
.+..||..+++......+...... .+++. -++ ++.+.||.+ ..+..||.++ .+.........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--- 501 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--- 501 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc---
Confidence 467788877665432212111111 11222 234 577777754 2467899887 55432221110
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEEEeCCC--eEEEEEcCCCcc
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKW 238 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~ 238 (471)
........++ ++.+.++|+.+| .+..||..+.++
T Consensus 502 -----~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 502 -----RLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred -----ccccceeEEE---CCEEEEEeeecceeehhhcCcccccc
Confidence 1111222233 267888999888 678888887764
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.84 E-value=0.33 Score=44.17 Aligned_cols=209 Identities=12% Similarity=0.071 Sum_probs=88.2
Q ss_pred CCcEEEEEecCCeEEEEeccCCc----cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe------CCCeEEEE
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGA----ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG------SDEYTRLY 231 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~i~i~ 231 (471)
..++++-|-..+.|+++|+.+.. ..+.+...+.....+... ...+-.-|+ +.+++++- .-|.+.++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~---PHT~Hclp~-G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR---PHTVHCLPD-GRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE---EEEEEE-SS---EEEEEEEETTS-S--EEEEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC---CceeeecCC-ccEEEEeccCCCCCCCCcEEEE
Confidence 33455555578899999998543 222322211111112222 233344466 56666643 22457788
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC--------------------C-cEEEEecC
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--------------------E-FIYLFTQD 290 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------------------~-~i~i~d~~ 290 (471)
|-++.+........ ......-..+-|.|..+.+++... | ++.+||..
T Consensus 163 D~~tf~v~g~We~~------------~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 163 DGETFEVKGRWEKD------------RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp -TTT--EEEE--SB-------------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred cCccccccceeccC------------CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 87765543322110 011222345566676666665431 2 58999987
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee-eCCCCcEEEEee-CCCeEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYVVSGS-DCGRIF 368 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~g~~l~~g~-~dg~v~ 368 (471)
.. +..+++.-.........+.| +.|+..+=++|. -.++|.
T Consensus 231 ~r--------------------------------------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~ 272 (461)
T PF05694_consen 231 TR--------------------------------------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIW 272 (461)
T ss_dssp TT--------------------------------------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEE
T ss_pred CC--------------------------------------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEE
Confidence 74 33444433222222444555 356555544432 234454
Q ss_pred EEEc-cCCe----eeEEecCC-----------------CcceEEEEEcCCCCEEEEeec-CCcEEEecCCCCCCcccCc
Q 012064 369 IWKK-KGGE----LIRVIEAD-----------------RHVVNCIEPHPHSTVLASSGI-ESDIKILTPNAADRATLPT 424 (471)
Q Consensus 369 iwd~-~~~~----~~~~~~~h-----------------~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~ 424 (471)
.|-- ..++ .+..+..- ..-|+.+..|.|.++|..+.. +|.|+.||+.......+.+
T Consensus 273 ~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 273 RFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp EEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred EEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence 4433 3332 12222110 245899999999998877664 8999999999876655543
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.82 E-value=0.005 Score=36.54 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=29.4
Q ss_pred CcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
...|..++|+|...+||.+..+|.|.+++++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 456999999999999999999999999999543
No 399
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.3 Score=41.56 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=90.8
Q ss_pred CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 103 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
-.+-+..+.++ +++...+..+.-+++.|+.+.............+--.++.. .| +...++..|.-+.+.|+.+
T Consensus 85 ~~~l~~Dv~vs----e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVS----EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEec----ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCC
Confidence 34566777885 46777777888899999988765443222212233344444 45 4567777677778889887
Q ss_pred CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCC-c
Q 012064 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-Q 261 (471)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 261 (471)
.+.......... ....-..++.+ |++-..+..|+.+.+-|+.+... |.....-. .
T Consensus 158 pssP~lagrya~-------~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~s--------------Pvli~~~n~g 213 (370)
T COG5276 158 PSSPQLAGRYAL-------PGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHS--------------PVLIGSYNTG 213 (370)
T ss_pred CCCceeeeeecc-------CCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCC--------------CeEEEEEecC
Confidence 765443322111 11122455555 56777778899999999987531 11111111 1
Q ss_pred cceEEEEEcCCCCeEEEeeCCcEEEEecCCCC
Q 012064 262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (471)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~ 293 (471)
..+.++..+++-.+++.... .+.+-|.....
T Consensus 214 ~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~s 244 (370)
T COG5276 214 PGTYSVSVSDNRAYLVVYDE-GVLIVDVSGPS 244 (370)
T ss_pred CceEEEEecCCeeEEEEccc-ceEEEecCCCC
Confidence 24666666666555544433 35555555443
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.73 E-value=0.008 Score=48.67 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=63.0
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEE-EcCCCCEEEEecCCCeEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS-FNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~-~s~~g~~l~s~~~d~~i~iw 88 (471)
+..++.|+.+|.|.+|+.+.-.... .....-...|-++- --.++.+..+++.||.|+.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~--------------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS--------------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRAC 129 (238)
T ss_pred CceEEeecccceEEEecCCccchHH--------------------HhhhcccccceeccccccccceeEEeccCCceeee
Confidence 5668899999999999988211110 11111223333332 22345678899999999999
Q ss_pred ECCCCceEEEeecCCC-cceeEEEEecCCCCeEEEEE--eCCCeEEEEeccc
Q 012064 89 DWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTC--AADGQVRHAQILE 137 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~ 137 (471)
+++-++.+... ..|. .++.....+. .++.++.+ +.|..++.|++..
T Consensus 130 n~~p~k~~g~~-g~h~~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 130 NIKPNKVLGYV-GQHNFESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCceeeee-ccccCCCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence 99877765554 4565 3444444443 45555555 5555666666543
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.72 E-value=0.33 Score=41.82 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=86.4
Q ss_pred cEEEEEEcCCCCEEEEec---CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe-cccc
Q 012064 63 CVNTVSFNTDGDILISGS---DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ-ILER 138 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~ 138 (471)
.+.+.+++++|+.+|... ....+.++. .+........+ ..+....|.+ ++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccC--CCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999877655 233455554 33433333222 3788889999 877777766666667764 2233
Q ss_pred Ccceee-EeeceeeeEEEEEEccCCCcEEEEEe--cCCeEEEEeccCCccc--eeee-ecccCCcCcceeeeeeEEEEEc
Q 012064 139 GGVETK-LLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAAT--ELFT-CRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 139 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
...... ........|..+.++|||.++.+... .++.|.+--+.....- ..+. ..... ......+..+.|.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~----~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA----PPLLSDVTDVAWS 174 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec----ccccCcceeeeec
Confidence 322211 11111128999999999977655552 3466766654322211 1111 00000 0023468899999
Q ss_pred CCCCceEEEEeCC
Q 012064 213 PRNANLFAVAGSD 225 (471)
Q Consensus 213 p~~~~~l~~~~~d 225 (471)
++ ..+++.+...
T Consensus 175 ~~-~~L~V~~~~~ 186 (253)
T PF10647_consen 175 DD-STLVVLGRSA 186 (253)
T ss_pred CC-CEEEEEeCCC
Confidence 98 4555554433
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.70 E-value=0.5 Score=43.53 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=53.5
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcc-eEEEEEcCC-----------------CC-EEEEeec
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV-VNCIEPHPH-----------------ST-VLASSGI 405 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~-----------------~~-~l~s~~~ 405 (471)
+.+++. +|++++.|+.+.=|.|.++|+.++..++.++|-.+. +.-+..... .. +++-+-.
T Consensus 310 ~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 310 GESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 778887 999999888877799999999999988888876532 111111111 11 3445566
Q ss_pred CCcEEEecCCCCCCc
Q 012064 406 ESDIKILTPNAADRA 420 (471)
Q Consensus 406 dg~i~iw~~~~~~~~ 420 (471)
-|.|-||.++.+.+.
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 899999999887653
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.70 E-value=0.56 Score=44.14 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=85.6
Q ss_pred ccEEEEEEcCCCCEEE-Eec--CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCC--CCeEEEEEeCCCeEEEEecc
Q 012064 62 GCVNTVSFNTDGDILI-SGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT--DDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~-s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~ 136 (471)
.+|..++|. ||+.++ |.- .+|.++.=| ...+ +.-..|..+.|.|.. +-..+++......|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 578889996 665544 321 122222211 1222 334568999999941 23356666778899999986
Q ss_pred ccCcceeeEeeceee------e--EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 137 ERGGVETKLLGKHQG------R--AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~------~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.......+.+..... + -.++.|+|... ++++-+....-.+++++........... ..+.|.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~---------~~G~IhC 160 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIK---------TSGLIHC 160 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEecc---------CCceEEE
Confidence 322111111111111 1 24578999885 5555444434345565544332222211 4557999
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
.+|.+||.++++..+..=.-++||-...
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 9999995555554455556788986554
No 404
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.0092 Score=59.09 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=70.4
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
+..++.|++.|.+...|....-. ....=..-.++|++++|+.+|++++.|-.+|.|.+||
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~--------------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLG--------------------PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccc--------------------hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEE
Confidence 44577778888887777663211 0011122368999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCcceeEEEEecCC-CCeEEEEEeCCCeEEEEecc
Q 012064 90 WKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 136 (471)
...++..+.+ ..|..+...+-+.-.. ++..++++...|. +|.+.
T Consensus 159 ~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 159 MHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 9998887666 4455544443332211 5556778777775 56653
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.45 E-value=0.4 Score=39.39 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=41.1
Q ss_pred eeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcC
Q 012064 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (471)
Q Consensus 347 ~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (471)
.++. +.+|++.++.-..|+|.-.|..+|+.+.+++-....|++++|--
T Consensus 216 Gm~I-D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTI-DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceE-ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 4444 67888888888889999999999999999998889999999963
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.36 E-value=0.45 Score=39.08 Aligned_cols=142 Identities=20% Similarity=0.217 Sum_probs=82.8
Q ss_pred cceeEEEEecCCCCeEEEEEeCC---------CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeE
Q 012064 105 DNVFQAKIMPFTDDRSIVTCAAD---------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (471)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 175 (471)
...++-..+| +|++++-.-.| |.++.|-... .+.. +...-.--+.++|+.+.+.+.++-+.+-.|
T Consensus 109 nR~NDgkvdP--~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~--i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 109 NRLNDGKVDP--DGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVEL--IWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred cccccCccCC--CCceeeeeeccccccccccccEEEEeccCC--Ccee--eehhccCCccccccccCcEEEEEccCceEE
Confidence 3556667788 99985432222 4455554321 1111 222223346789998887777777888888
Q ss_pred EEEe--ccCCccce---eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCc
Q 012064 176 QHFD--LRTGAATE---LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (471)
Q Consensus 176 ~iwd--~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (471)
.-|| ..++.... .+...+..... ....-.++.+-+ |++.++.-..++|...|..++++.....+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e----~~~PDGm~ID~e-G~L~Va~~ng~~V~~~dp~tGK~L~eikl------ 251 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFE----SLEPDGMTIDTE-GNLYVATFNGGTVQKVDPTTGKILLEIKL------ 251 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcC----CCCCCcceEccC-CcEEEEEecCcEEEEECCCCCcEEEEEEc------
Confidence 7787 66665432 22222111110 011233445555 67888888999999999999986654333
Q ss_pred CCCCcccCCCccceEEEEEcCC
Q 012064 251 FCPPNLIGDEQVGITGLAFSDQ 272 (471)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~ 272 (471)
....|++++|--.
T Consensus 252 ---------Pt~qitsccFgGk 264 (310)
T KOG4499|consen 252 ---------PTPQITSCCFGGK 264 (310)
T ss_pred ---------CCCceEEEEecCC
Confidence 1456889998643
No 407
>PRK10115 protease 2; Provisional
Probab=96.28 E-value=1.5 Score=44.13 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=67.3
Q ss_pred ccEEEEEEcCCCCEEEEecC-----CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC------CeE
Q 012064 62 GCVNTVSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQV 130 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i 130 (471)
-.+..+.+||||++|+.+.. ...|++-|+.+|+.+.....+- -..++|.+ |++.|+....+ ..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~--D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWAN--DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence 45777899999998886532 3468899998887433332221 15689999 88776655432 357
Q ss_pred EEEeccccCcceeeEeeceeeeEE-EEEEccCCCcEEEEEe--cCCeEEEEecc
Q 012064 131 RHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCG--EDGLVQHFDLR 181 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 181 (471)
..+++.++.......+........ ....+.++..+++.+. .++.+.+++..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 777777663222222332222222 3333446655544332 23578888853
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.23 E-value=1.1 Score=42.29 Aligned_cols=120 Identities=11% Similarity=0.090 Sum_probs=75.6
Q ss_pred ccccEEEEEEcCCC-----CEEEEecCCCeEEEEECCC-----CceEEEeecCCCc--c--eeEEEEecCCCCeEEEEEe
Q 012064 60 HRGCVNTVSFNTDG-----DILISGSDDRRVILWDWKT-----ERVKLSFHSGHND--N--VFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 60 h~~~V~~~~~s~~g-----~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~--~--v~~~~~~~~~~~~~l~s~~ 125 (471)
.-..|..+.|.|-+ .+||. .....|.||.+.. ++.+......... + -..+.|+| ....|+.-.
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT 131 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLT 131 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEe
Confidence 34568999999953 35554 5567899998852 2222221111111 1 12457999 777777665
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (471)
....-.+.++..........+ ...+.|.|.+|.+||++++++.+..=.-++||-...
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 554445566655443332223 456789999999999888887787778889986544
No 409
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.22 E-value=0.66 Score=40.79 Aligned_cols=199 Identities=17% Similarity=0.159 Sum_probs=97.7
Q ss_pred eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC----ceEE-EEeCCCeEEEEEcCCCccCCCC---CCC
Q 012064 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFA-VAGSDEYTRLYDIRKYKWDGST---DFG 245 (471)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~-~~~~dg~i~i~d~~~~~~~~~~---~~~ 245 (471)
.|.+||+++++.++.+........ ..+.+..+.+....+ .++. +=...+.|.+||+.+++.-... ...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~----~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP----PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT
T ss_pred EEEEEECCCCcEEEEEECChHHcc----cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce
Confidence 577899999998888776543322 344678888877422 2333 3344568999999987532110 000
Q ss_pred CCC-CcCCCCcccCCCccceEEEEEcC---CCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 246 QPA-DYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
.|. ..+............+..++.+| +++.|....-...++|.+.+......
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~------------------------ 166 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP------------------------ 166 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST------------------------
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc------------------------
Confidence 010 00000000111123377777766 67777766633334444433211110
Q ss_pred CCCCCcc-cccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC---eeeEEe-cCC--CcceEEEEEc
Q 012064 322 PSTANTD-VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVI-EAD--RHVVNCIEPH 394 (471)
Q Consensus 322 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~---~~~~~~-~~h--~~~v~~~~~s 394 (471)
...... .....+.+ |.... ....+++ +++|.++++--+.+.|..|+.... +....+ +.. -..+..+.+.
T Consensus 167 -~~~~~~~~~~~v~~l-G~k~~-~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 167 -SLSDAQALASQVQDL-GDKGS-QSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp -T--HHH-HHHT-EEE-EE----SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred -cccccccccccceec-cccCC-CCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 000000 01112222 22111 1445666 899999988888999999998651 111222 111 2467889998
Q ss_pred C--CCCEEEEee
Q 012064 395 P--HSTVLASSG 404 (471)
Q Consensus 395 ~--~~~~l~s~~ 404 (471)
+ +|.+.+.+.
T Consensus 243 ~~~~g~L~v~sn 254 (287)
T PF03022_consen 243 PEGDGYLWVLSN 254 (287)
T ss_dssp T--TS-EEEEE-
T ss_pred cccCceEEEEEC
Confidence 8 777666554
No 410
>PHA03098 kelch-like protein; Provisional
Probab=96.17 E-value=0.34 Score=47.32 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=75.4
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC------CeEEEEeccccCc
Q 012064 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGG 140 (471)
Q Consensus 72 ~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~ 140 (471)
+++..+.||.+ ..+..||..+++-...-...+...-.+++. - +++.++.|+.+ ..+..||..+++.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 57777778765 357778877654311110011111112222 2 67777777632 3578888877655
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecC--------CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
......+..... .++. ..++ ++++.||.+ ..+.+||.++++....-... . .......+.+
T Consensus 419 ~~~~~~p~~r~~-~~~~-~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~-------~r~~~~~~~~- 486 (534)
T PHA03098 419 SKGSPLPISHYG-GCAI-YHDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-F-------PRINASLCIF- 486 (534)
T ss_pred eecCCCCccccC-ceEE-EECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-c-------ccccceEEEE-
Confidence 432111111111 1122 2234 577777653 23888998887654322110 0 0001112222
Q ss_pred CCCCceEEEEeCC-----CeEEEEEcCCCcc
Q 012064 213 PRNANLFAVAGSD-----EYTRLYDIRKYKW 238 (471)
Q Consensus 213 p~~~~~l~~~~~d-----g~i~i~d~~~~~~ 238 (471)
+ +.+++.|+.+ ..+..||..+.++
T Consensus 487 -~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 -N-NKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred -C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 3 5677777654 4688898887764
No 411
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.16 E-value=1.7 Score=43.83 Aligned_cols=228 Identities=11% Similarity=0.001 Sum_probs=114.5
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEE---EEEcCCCCEEEEecCCCeEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNT---VSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~---~~~s~~g~~l~s~~~d~~i~ 86 (471)
+..+..++.++.|.-.|..||+.+-+.-........-.....+-..-+.+....... .+-..++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567778888999999999999977432111000000000000000000000000000 00011345788888999999
Q ss_pred EEECCCCceEEEeecCCCccee-------------EEEEecCCCCeEEEEEeC----------CCeEEEEeccccCccee
Q 012064 87 LWDWKTERVKLSFHSGHNDNVF-------------QAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVET 143 (471)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~ 143 (471)
-.|.++|+.+..+- ..+.|. .+.-.|.-.+..++.++. +|.|+-+|.++++..-.
T Consensus 274 ALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999999887762 222221 111111112344555532 58899999988876543
Q ss_pred eEee----------c-----eeeeE-EEEEEccCCCcEEEEEe------------------cCCeEEEEeccCCccceee
Q 012064 144 KLLG----------K-----HQGRA-HKLAIEPGSPHVFYTCG------------------EDGLVQHFDLRTGAATELF 189 (471)
Q Consensus 144 ~~~~----------~-----~~~~v-~~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~ 189 (471)
.... + -...+ ...++.++.. +++.+. ..+.|.-.|.++++....+
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 2110 0 00011 2234444442 223211 2356778888999888777
Q ss_pred eecccCCcCcceeeeeeEEEEEcCCCC---ceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 190 TCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
+........ +.......-+.+...++ ..++.++.+|.++++|.++++.+..
T Consensus 431 Q~~~hD~WD-~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 431 QTVHHDLWD-MDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cccCCcccc-ccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 643211110 00111111122222123 2788899999999999999876544
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.04 E-value=0.86 Score=39.28 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=64.4
Q ss_pred eEEEEEEccCCCcEEEEEecC--CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (471)
.+.+.++++++..+.+....+ ..++++. .+....... ....+..-.|+++ +...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-----------~g~~l~~PS~d~~-g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-----------TGGSLTRPSWDPD-GWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-----------cCCccccccccCC-CCEEEEEcCCCceE
Confidence 678899999996554444233 3455554 333332221 1125677889998 55666555566666
Q ss_pred EEE-cCCCccCCCCCCCCCCCcCCCCcccCCC-ccceEEEEEcCCCCeEEEee----CCcEEEEecCC
Q 012064 230 LYD-IRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELLVSYN----DEFIYLFTQDM 291 (471)
Q Consensus 230 i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~----~~~i~i~d~~~ 291 (471)
++. ...++.. +....... ...|..+.++|||..++... ++.+++--+..
T Consensus 91 ~~~~~~~g~~~-------------~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 91 VVRDSASGTGE-------------PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred EEEecCCCcce-------------eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 664 2222211 00011111 11799999999999887665 45677766543
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.19 Score=50.67 Aligned_cols=200 Identities=8% Similarity=-0.035 Sum_probs=111.1
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc-cccEEEEEEcCCCCEEEEe--c
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVSFNTDGDILISG--S 80 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~~g~~l~s~--~ 80 (471)
++.++.-..+.+++..+.+.++-... .++.... .......+.-.....++-| .-+|..+..++|++..+.- +
T Consensus 47 la~sn~ysl~Fa~~nsk~L~vfgtkn-lLi~~it----~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~ts 121 (1405)
T KOG3630|consen 47 LAISNSYSLFFAASNSKSLAVFGTKN-LLIDHIT----SDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTS 121 (1405)
T ss_pred hhcccccceEEEecCCcceeeecccc-ceeeccc----ccccccccccccccceeeeccccceEEEeccCCceEEEEEec
Confidence 34455556677777777777776552 2211000 0000001111111233333 3566777778887655433 3
Q ss_pred CCCeEEEEECCCCceEE----Eeec------CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee
Q 012064 81 DDRRVILWDWKTERVKL----SFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~----~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
.+-.|..||+.+-..-. ..+. .......++.|+|. -....+.+..|+.|++..+........ -....
T Consensus 122 ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl~V~~~~~~~~~v~--s~p~t 198 (1405)
T KOG3630|consen 122 NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSLRVKSTKQLAQNVT--SFPVT 198 (1405)
T ss_pred CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccchhhhhhhhhhhhhc--ccCcc
Confidence 34478889986533211 1111 12234557889883 233456677789999887755444332 12245
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (471)
...++++|+|.| +.++.|-..|++.-|... .+....+.+.+.. ....|.+++|-.. ..+++
T Consensus 199 ~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~------e~yrvl~v~Wl~t-~eflv 259 (1405)
T KOG3630|consen 199 NSQTAVLWSPRG-KQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE------ENYRVLSVTWLST-QEFLV 259 (1405)
T ss_pred cceeeEEecccc-ceeeEecCCCeEEEeecc-cceeecccCCCcC------CCcceeEEEEecc-eeEEE
Confidence 678999999999 567999999999888643 3333333333222 2347899999875 33443
No 414
>PRK10115 protease 2; Provisional
Probab=95.97 E-value=2.1 Score=43.10 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=47.6
Q ss_pred cceeEEEEecCCCCeEEEEEeCC-----CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC-----Ce
Q 012064 105 DNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GL 174 (471)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~ 174 (471)
-.+..+.|+| |+++|+.+... ..|++.|+.++..+... +..- -..++|.++++.++++...+ ..
T Consensus 127 ~~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCc---ceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 3466788999 99988865432 36888898877533221 2211 14589999987666655432 36
Q ss_pred EEEEeccCC
Q 012064 175 VQHFDLRTG 183 (471)
Q Consensus 175 i~iwd~~~~ 183 (471)
|+.+++.++
T Consensus 201 v~~h~lgt~ 209 (686)
T PRK10115 201 VWRHTIGTP 209 (686)
T ss_pred EEEEECCCC
Confidence 788888877
No 415
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.7 Score=37.29 Aligned_cols=135 Identities=12% Similarity=0.122 Sum_probs=80.2
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee---EEEEE
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLA 157 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~ 157 (471)
.+|.-..+|..+.+++.++ ...+.=+.++. |+..|+.++...+++.-|.++.....+........+ ++.+.
T Consensus 109 ~egvaf~~d~~t~~~lg~~--~y~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE 182 (262)
T COG3823 109 KEGVAFKYDADTLEELGRF--SYEGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELE 182 (262)
T ss_pred ccceeEEEChHHhhhhccc--ccCCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeeccccccee
Confidence 4677788888888877766 34455555554 667788777777888777776655443222222222 33344
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCc--ceeeeeeEEEEEcCCCCceEEEEe
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN--YMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
|- +| .+.+-.-.+..|...|.++|+.+.-+........-. ..+..-.+.+++.|++++++++|-
T Consensus 183 ~V-dG-~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 183 WV-DG-ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ee-cc-EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 43 33 344444455567777888887776665443332211 113345788999999667777654
No 416
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.043 Score=54.69 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=54.9
Q ss_pred EeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceE---EEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN---CIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 344 ~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~---~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+|.+++| +.+|+.++.|-.+|.|.+||+..++..+.+..|..+.+ .+.+..++..+.++..-|. +|++.
T Consensus 132 ~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 132 PVTSVAF-NQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceeeEe-cCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4999999 99999999999999999999999999988877665544 4445556667888877776 55553
No 417
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.81 E-value=1.1 Score=44.13 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=92.5
Q ss_pred CCEEEEecCCCeEEEEECCCCceEE------Eee-c--------------CCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 73 GDILISGSDDRRVILWDWKTERVKL------SFH-S--------------GHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~------~~~-~--------------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
+.+|+.|. .+.|.||+...-.... .+. . .....|+.+...-+.+...|+.|.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 5789999975432211 110 0 011235555555455778899999999999
Q ss_pred EEeccccC-----------c------ceeeEeeceeeeEEEEEEc--cCCCcEEEEEecCCeEEEEeccCCccceeeeec
Q 012064 132 HAQILERG-----------G------VETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (471)
Q Consensus 132 iwd~~~~~-----------~------~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 192 (471)
+|.++.-- . +.......-...+++++++ ... +++++++....|.+|-...........
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~-- 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFAFALVDERFYHV-- 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEEEEEeccccccccc--
Confidence 99763200 0 0001111234578899998 655 688888888888888665431111000
Q ss_pred ccCCcCcceeeeeeEEEEEcCCC----Cc-eEEEEeCCCeEEEEEc
Q 012064 193 PIDDRRNYMTVVNLNAIAIDPRN----AN-LFAVAGSDEYTRLYDI 233 (471)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~----~~-~l~~~~~dg~i~i~d~ 233 (471)
+.+.+...|.+++|-++. |. .+++++-.|.+.+|++
T Consensus 205 -----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 -----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -----cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 011245578899998763 22 7888999999999888
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.76 E-value=0.31 Score=47.13 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=70.4
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc--CCCCceEEEEeCCCeEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID--PRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~i 230 (471)
..-+.-+.-+ +..++-+....+.|||.+.+......... ....|.++.|. |+ ++.+++.+-.+.|.+
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~---------~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFS---------EDDPIRDLDWTSTPD-GQSILAVGFPHHVLL 100 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeec---------CCCceeeceeeecCC-CCEEEEEEcCcEEEE
Confidence 3344444444 34444455568999999988743332211 34568888875 56 556666667788888
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
|.-..........--.+.+. ..+......+|....|.++| .|+.++++.+.++|-.-
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~---i~i~~~T~h~Igds~Wl~~G-~LvV~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRK---IDISSHTPHPIGDSIWLKDG-TLVVGSGNQLFVFDKWL 157 (631)
T ss_pred EEccchhhhcCCcccceeEE---EEeecCCCCCccceeEecCC-eEEEEeCCEEEEECCCc
Confidence 86543221111000001111 11122223568899999998 55666677888887644
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=95.68 E-value=1.3 Score=42.41 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=72.6
Q ss_pred CCCCEEEEecCC--CeEEEEECCCCceEEEeec-CCCcceeEEEEecCCCCeEEEEEeCCC---eEEEEeccccCcceee
Q 012064 71 TDGDILISGSDD--RRVILWDWKTERVKLSFHS-GHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETK 144 (471)
Q Consensus 71 ~~g~~l~s~~~d--~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~ 144 (471)
-+|...+.||.+ ..+..||..+++-. .... .....-.+++. - +++..+.|+.++ .+..||..++......
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~r~~~~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKPRCNPAVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCCCcccEEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEEEeCC
Confidence 367777788764 35778887654321 1111 11111112222 2 778888877653 4677887766554321
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
......... +++ .-++ ++.+.|+ ...+||.++++........ . ..... +++.. + +.+.+.|+.
T Consensus 393 ~m~~~r~~~-~~~-~~~~-~IYv~GG---~~e~ydp~~~~W~~~~~m~---~-----~r~~~-~~~v~-~-~~IYviGG~ 455 (480)
T PHA02790 393 STYYPHYKS-CAL-VFGR-RLFLVGR---NAEFYCESSNTWTLIDDPI---Y-----PRDNP-ELIIV-D-NKLLLIGGF 455 (480)
T ss_pred CCCCccccc-eEE-EECC-EEEEECC---ceEEecCCCCcEeEcCCCC---C-----Ccccc-EEEEE-C-CEEEEECCc
Confidence 121111111 222 2244 5666664 4678998877554322111 0 01111 22222 2 567777775
Q ss_pred C-----CeEEEEEcCCCc
Q 012064 225 D-----EYTRLYDIRKYK 237 (471)
Q Consensus 225 d-----g~i~i~d~~~~~ 237 (471)
+ ..+..||..+.+
T Consensus 456 ~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 456 YRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCcccceEEEEECCCCe
Confidence 4 357788877665
No 420
>PHA03098 kelch-like protein; Provisional
Probab=95.66 E-value=1 Score=44.02 Aligned_cols=151 Identities=14% Similarity=0.067 Sum_probs=75.2
Q ss_pred CCCCEEEEecCCC------eEEEEECCCCceEEEeecCC-CcceeEEEEecCCCCeEEEEEeCC-----CeEEEEecccc
Q 012064 71 TDGDILISGSDDR------RVILWDWKTERVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILER 138 (471)
Q Consensus 71 ~~g~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 138 (471)
.++..++.||.++ .+..||..+++- .....-. ...-.+++. - ++..++.|+.+ ..+..||..++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTV-F--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEE-E--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 3556677776542 567788776554 2221111 111112222 2 67777788765 34677887776
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecC------CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
.......+...... .+.+. -++ ++++.||.+ ..+..||+.+++....-... .. . .-.+++..
T Consensus 369 ~W~~~~~lp~~r~~-~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~-----r--~~~~~~~~ 436 (534)
T PHA03098 369 KWREEPPLIFPRYN-PCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS-----H--YGGCAIYH 436 (534)
T ss_pred ceeeCCCcCcCCcc-ceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cc-----c--cCceEEEE
Confidence 55432212211111 11222 234 677777732 45888998876543321110 00 0 01122222
Q ss_pred CCCCceEEEEeCC--------CeEEEEEcCCCccC
Q 012064 213 PRNANLFAVAGSD--------EYTRLYDIRKYKWD 239 (471)
Q Consensus 213 p~~~~~l~~~~~d--------g~i~i~d~~~~~~~ 239 (471)
+ +.+++.|+.+ ..+..||..+.++.
T Consensus 437 -~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 437 -D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred -C-CEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 2 4566666643 23888999887654
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.56 E-value=1.5 Score=38.57 Aligned_cols=277 Identities=12% Similarity=0.087 Sum_probs=120.0
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEee--cCC---CcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
-...+..+.|..+..-+++|.. +.| +...+|-...... ... .-...++.|.. ...+++ +..+. ++.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~-g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~---~~g~iv-G~~g~--ll~ 85 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAY-GTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG---NEGWIV-GEPGL--LLH 85 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETT-TEE--EEESSTTSS-EE-----S-----EEEEEEEET---TEEEEE-EETTE--EEE
T ss_pred CCCceEEEEEecCCEEEEEecC-CEE--EEECCCCccccccccCCCccceeeEEEEEecC---CceEEE-cCCce--EEE
Confidence 3568899999866666666654 543 3333332111110 111 22456777753 444444 44553 233
Q ss_pred ccccCc-ceeeEee-ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 135 ILERGG-VETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 135 ~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
..++.. -....+. .-......+....++ .. ...+..|.| |....+-......... ....+..+.-+
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~-~l~~~~G~i--y~T~DgG~tW~~~~~~--------~~gs~~~~~r~ 153 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALGDG-SA-ELAGDRGAI--YRTTDGGKTWQAVVSE--------TSGSINDITRS 153 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEETT-EE-EEEETT--E--EEESSTTSSEEEEE-S------------EEEEEE-
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cE-EEEcCCCcE--EEeCCCCCCeeEcccC--------CcceeEeEEEC
Confidence 333222 1111111 112223334444444 33 333444543 3333332222211111 33467888888
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCC
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
++ +.+++++.......-||.-..... .........|.++.|.|++.+.+.+..+.++.=+....
T Consensus 154 ~d-G~~vavs~~G~~~~s~~~G~~~w~---------------~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 154 SD-GRYVAVSSRGNFYSSWDPGQTTWQ---------------PHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp TT-S-EEEEETTSSEEEEE-TT-SS-E---------------EEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE
T ss_pred CC-CcEEEEECcccEEEEecCCCccce---------------EEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC
Confidence 88 678888766666667776532211 11112356799999999998877776677777662110
Q ss_pred CCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
.. ...............+..++| .+++...++|+ .|.+. ...
T Consensus 218 ~~-----------------------------------~w~~~~~~~~~~~~~~ld~a~-~~~~~~wa~gg-~G~l~-~S~ 259 (302)
T PF14870_consen 218 GE-----------------------------------TWSEPIIPIKTNGYGILDLAY-RPPNEIWAVGG-SGTLL-VST 259 (302)
T ss_dssp EE-----------------------------------EE---B-TTSS--S-EEEEEE-SSSS-EEEEES-TT-EE-EES
T ss_pred cc-----------------------------------ccccccCCcccCceeeEEEEe-cCCCCEEEEeC-CccEE-EeC
Confidence 00 000000111111122788998 88877777666 45443 333
Q ss_pred cCCeeeEEec---CCCcceEEEEEcCCCCEEEEeecCCcEEEe
Q 012064 373 KGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (471)
Q Consensus 373 ~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 412 (471)
..|+.-+..+ .-....+.+.|.++.+-++.| .+|.|.-|
T Consensus 260 DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 260 DGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp STTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 4454443332 234568888887665555554 67776654
No 422
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.51 E-value=1.6 Score=38.47 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=79.3
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEec
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 180 (471)
..-.+.+..+.-++ |+++++++..-....-||.-....... -......|..+.|.|++ .+ ......|.|+.=+.
T Consensus 141 ~~~~gs~~~~~r~~--dG~~vavs~~G~~~~s~~~G~~~w~~~--~r~~~~riq~~gf~~~~-~l-w~~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 141 SETSGSINDITRSS--DGRYVAVSSRGNFYSSWDPGQTTWQPH--NRNSSRRIQSMGFSPDG-NL-WMLARGGQIQFSDD 214 (302)
T ss_dssp -S----EEEEEE-T--TS-EEEEETTSSEEEEE-TT-SS-EEE--E--SSS-EEEEEE-TTS--E-EEEETTTEEEEEE-
T ss_pred cCCcceeEeEEECC--CCcEEEEECcccEEEEecCCCccceEE--ccCccceehhceecCCC-CE-EEEeCCcEEEEccC
Confidence 45567788888888 999888887665666777533333322 23345789999999997 34 44558888888762
Q ss_pred cCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCC
Q 012064 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (471)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (471)
... .........+. ....-.+..++|.++ +...++|+ .|.+ +.....++-=. .......-
T Consensus 215 ~~~--~~~w~~~~~~~---~~~~~~~ld~a~~~~-~~~wa~gg-~G~l-~~S~DgGktW~------------~~~~~~~~ 274 (302)
T PF14870_consen 215 PDD--GETWSEPIIPI---KTNGYGILDLAYRPP-NEIWAVGG-SGTL-LVSTDGGKTWQ------------KDRVGENV 274 (302)
T ss_dssp TTE--EEEE---B-TT---SS--S-EEEEEESSS-S-EEEEES-TT-E-EEESSTTSS-E------------E-GGGTTS
T ss_pred CCC--ccccccccCCc---ccCceeeEEEEecCC-CCEEEEeC-CccE-EEeCCCCccce------------ECccccCC
Confidence 111 11111100000 013335789999987 45666554 4544 33444333100 01111122
Q ss_pred ccceEEEEEcCCCCeEEEeeCCcEEEE
Q 012064 261 QVGITGLAFSDQSELLVSYNDEFIYLF 287 (471)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~ 287 (471)
...+..+.|.++.+-++.+.+|.+.-|
T Consensus 275 ~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 275 PSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCceEEEEEcCCCceEEECCCcEEEEe
Confidence 445788888887888888888876555
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=2.7 Score=40.98 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=55.2
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce-eeEeeceeeeEEEEEEc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~ 159 (471)
.-..|+||+. +|+.+.++.-.|. .+-.+.|+ +...|+....+|++.++++....... ..........|..+.+.
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs---~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHG-ELIGMGWS---DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCC-Ceeeeccc---CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence 3456999996 4777777644454 77789998 56778888999999999984332211 01112223345555555
Q ss_pred cCCCcEEEEEecCCeEEEE
Q 012064 160 PGSPHVFYTCGEDGLVQHF 178 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iw 178 (471)
.+| ++.-..+|.+.+.
T Consensus 137 ~~G---Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 137 HNG---VAVLTVSGQVILI 152 (829)
T ss_pred cCc---eEEEecCCcEEEE
Confidence 566 3444555555544
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.41 Score=48.52 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=91.9
Q ss_pred ceeEEEEecCCCCeEEEE--EeCCCeEEEEeccccCcce---eeEeece------eeeEEEEEEccCCCcEEEEEecCCe
Q 012064 106 NVFQAKIMPFTDDRSIVT--CAADGQVRHAQILERGGVE---TKLLGKH------QGRAHKLAIEPGSPHVFYTCGEDGL 174 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~---~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~ 174 (471)
.+..+...+ |+...++ .+.+-.|..+|+++-.... ...+..| ..-..++.|+|.=+...+.+..|+.
T Consensus 102 pi~~~v~~~--D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFH--DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cceEEEecc--CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 344444555 7554443 3344478899987543321 1112222 1234677888876656788888999
Q ss_pred EEEEeccCCccc-eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCC
Q 012064 175 VQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (471)
Q Consensus 175 i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (471)
|++..+...... ..+. .....++++|+|. |..++.|...|++.-|...-.... ...++
T Consensus 180 l~V~~~~~~~~~v~s~p-----------~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik~---------~ip~P 238 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-----------VTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIKS---------EIPEP 238 (1405)
T ss_pred hhhhhhhhhhhhhcccC-----------cccceeeEEeccc-cceeeEecCCCeEEEeecccceee---------cccCC
Confidence 988876543222 1111 3446899999999 688999999999988876533110 11122
Q ss_pred CcccCCCccceEEEEEcCCCCeEEEee
Q 012064 254 PNLIGDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
... ....|.+++|-....+++..+
T Consensus 239 p~~---e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 239 PVE---ENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CcC---CCcceeEEEEecceeEEEEec
Confidence 211 156799999998888887765
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.34 E-value=2.3 Score=39.17 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred ccEEEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--Cce--EEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 62 GCVNTVSFNTDGDILISGS-----------DDR-RVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~-----------~d~-~i~iwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+ .........+++.+ ++ .++ +.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~--~G-lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAV--GG-VYV-AT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEec--CC-EEE-eC
Confidence 3456899999999877642 223 777776443 332 2233 22233567889988 77 444 44
Q ss_pred CCCeEEEEeccccC-c--ceeeE---eec----eeeeEEEEEEccCCCcEEEEEe
Q 012064 126 ADGQVRHAQILERG-G--VETKL---LGK----HQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 126 ~dg~i~iwd~~~~~-~--~~~~~---~~~----~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
.....++.+..... . ..... +.. +......++|.|+| .+.++.+
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 44333333443211 0 11111 111 23447789999998 4555444
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.33 E-value=0.79 Score=42.31 Aligned_cols=62 Identities=10% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 353 ~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
....|+|+|+..|.|++||.-.-.....+.+-...|..+..+.+|.++.+.+. ..+.+-++.
T Consensus 571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 34569999999999999997665666677788889999999999997665553 466666665
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.25 E-value=2.4 Score=38.98 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=53.5
Q ss_pred cceeEEEEecCCCCeEEEEEe-----------CCC-eEEEEeccccC--cceeeEeeceeeeEEEEEEccCCCcEEEEEe
Q 012064 105 DNVFQAKIMPFTDDRSIVTCA-----------ADG-QVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
.....++|.+ +|+.+++-. ..+ .|.+++-.++. ......+.........+++.+++ +++ +.
T Consensus 14 ~~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-AT 88 (367)
T ss_pred CCCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eC
Confidence 3456788888 888777643 223 67777644332 22222233333456889998877 444 44
Q ss_pred cCCeEEEEeccCC-----ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 171 EDGLVQHFDLRTG-----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 171 ~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
.....++.|.... +....+....... . ........++|.||+ .+.++
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~--~-~~~~~~~~l~~gpDG-~LYv~ 140 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQI--N-NHHHSLNSLAWGPDG-WLYFN 140 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCC--C-cccccccCceECCCC-CEEEe
Confidence 4433334454322 1111111111100 0 012346789999994 44443
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.17 E-value=0.1 Score=46.96 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=93.5
Q ss_pred cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee----eEE-EEEEccCCCcEEEEEecCCeE
Q 012064 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG----RAH-KLAIEPGSPHVFYTCGEDGLV 175 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~i 175 (471)
......+..+-..| |++.+..-+. .++.++++.+.....++......+ .|+ .+.....+ .-++++..||.|
T Consensus 217 ~~~~~~v~qllL~P--dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v 292 (733)
T COG4590 217 SVPFSDVSQLLLTP--DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLV 292 (733)
T ss_pred CCCccchHhhEECC--CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence 44556777888899 9999887765 578888886654433222221111 111 11122334 456778888888
Q ss_pred EEE-eccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCC
Q 012064 176 QHF-DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (471)
Q Consensus 176 ~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (471)
.-| |.+.+.. ..+........ ...++..+.-.. +.+-+++-+.+|++..+.....+..
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l----~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l--------------- 351 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKL----APAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL--------------- 351 (733)
T ss_pred eeeeeeecCCC-Ccceeeecccc----Ccccceeecccc-ccceEEEEcCCCceeeeecccCcce---------------
Confidence 766 5554432 11110000000 111222222111 2345666677777777665443211
Q ss_pred cccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCC
Q 012064 255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (471)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~ 294 (471)
+...--..+.-++++|++.++++-..++++++.+++..+
T Consensus 352 -L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 352 -LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred -ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence 111112345678999999999999999999999987654
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.12 E-value=1.9 Score=39.89 Aligned_cols=163 Identities=10% Similarity=0.088 Sum_probs=92.6
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc---C--CCCeEEEeeCCcEEE
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---D--QSELLVSYNDEFIYL 286 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~--~~~~l~~~~~~~i~i 286 (471)
++++...+++|+..|.+++|+......... ..-+...-..+|..+..- + +...||.-.-.++.+
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-----------~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-----------DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-----------cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 344567899999999999999965432111 011122234566666543 2 335677777788888
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee---eCCC-CcEEEEee
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF---FGPK-CEYVVSGS 362 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~-g~~l~~g~ 362 (471)
|.+........ ......+.....|.-......+++ -... ..++..-+
T Consensus 102 Y~v~~~~g~~~-----------------------------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS 152 (418)
T PF14727_consen 102 YSVSLVDGTVE-----------------------------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQS 152 (418)
T ss_pred EEEEecCCCcc-----------------------------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEe
Confidence 88733210000 000111222223322222333333 1122 24677789
Q ss_pred CCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
-||.+.+|+-+.--....+.. .--..-+.+.+.-..+++++.+..+..|+..
T Consensus 153 ~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 153 MDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 999999999755443344433 2233446777788888899888888888874
No 430
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.06 E-value=1.2 Score=41.78 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=33.3
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec--CC---CcceEEEEEcCCCCEEE
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--AD---RHVVNCIEPHPHSTVLA 401 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~--~h---~~~v~~~~~s~~~~~l~ 401 (471)
+..+.- .|+++ |..|+.+|.++. +.+.++....+. .| .+.+..+...|+|++-+
T Consensus 421 V~aive-d~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 421 VSAIVE-DPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred eeeeee-cCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEE
Confidence 666665 88888 778888887664 333433333222 11 23477888889988543
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.87 E-value=0.18 Score=28.95 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=26.7
Q ss_pred ccEEEEEEcCCC---CEEEEecCCCeEEEEECCCC
Q 012064 62 GCVNTVSFNTDG---DILISGSDDRRVILWDWKTE 93 (471)
Q Consensus 62 ~~V~~~~~s~~g---~~l~s~~~d~~i~iwd~~~~ 93 (471)
+.|.++.|||+. .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.84 E-value=0.72 Score=45.99 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=51.3
Q ss_pred eEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc----------CCee--e-EEe--------cCCCcceEEEEEcCCC---C
Q 012064 343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK----------GGEL--I-RVI--------EADRHVVNCIEPHPHS---T 398 (471)
Q Consensus 343 ~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~----------~~~~--~-~~~--------~~h~~~v~~~~~s~~~---~ 398 (471)
..|..+.. +|+|++|+..|..|. .|-.+. .|+. . +.+ ..+...|..+.|+|.+ .
T Consensus 85 f~v~~i~~-n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISL-NPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEE-CCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34888888 999999998887664 333331 1111 1 111 1234579999999975 6
Q ss_pred EEEEeecCCcEEEecCCCCC
Q 012064 399 VLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 399 ~l~s~~~dg~i~iw~~~~~~ 418 (471)
.|+.-..|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888889999999997543
No 433
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.70 E-value=5.7 Score=40.47 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=48.6
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe----cC---------------CCcceEEEEEcCCCCEEEEeec
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI----EA---------------DRHVVNCIEPHPHSTVLASSGI 405 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~----~~---------------h~~~v~~~~~s~~~~~l~s~~~ 405 (471)
|.++.. ..-+.+++..-+||+|.++|..+.+.+... .. +-..+..++|||.+..++.-..
T Consensus 262 V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 262 VVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred EEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 777776 667779999999999999998776544332 10 1123456899999999999999
Q ss_pred CCcEE
Q 012064 406 ESDIK 410 (471)
Q Consensus 406 dg~i~ 410 (471)
+|.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 99866
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.65 E-value=0.16 Score=29.25 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=26.8
Q ss_pred eeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCC
Q 012064 205 NLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 205 ~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~ 235 (471)
.+.++.|+|.++ .+|+.+-..|.+.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999998755 6899888999999999995
No 435
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.57 E-value=2.8 Score=36.33 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=121.8
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEecccc-----CcceeeEeec-----eeeeEEEEEEccCC-----------Cc
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-----GGVETKLLGK-----HQGRAHKLAIEPGS-----------PH 164 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~-----------~~ 164 (471)
.-+.++++| .+...++....+...+||.... .......+.. .....+.+.|+... ..
T Consensus 24 N~WGia~~p--~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRP--GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecC--CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999 8888888888889999998611 1111111221 12346677776432 12
Q ss_pred EEEEEecCCeEEEEeccCCcc---ceeeeecccCCcCcceeeeeeEEEEEcCC--CCceEEEEeCCCeEEEEEcCCCccC
Q 012064 165 VFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
.++.+++||+|.-|...-+.. ...+...... ...-...+++... +..+.++--..++|.+||-.-.+..
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCC------CcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 367789999999998644332 1111111100 1223345555532 2234444457888999987654322
Q ss_pred CCCCCCCCC--CcCCCCcccC-CCccceEEEEEcCCCCe-EEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCC
Q 012064 240 GSTDFGQPA--DYFCPPNLIG-DEQVGITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (471)
Q Consensus 240 ~~~~~~~~~--~~~~~~~~~~-~~~~~i~~~~~~~~~~~-l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (471)
..-.+..|. ..+.|-.+.. +..-.|+...-.++.+. ++..+-+.|-+||....
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------------------- 232 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------------------- 232 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----------------------
Confidence 111111110 0011111100 01111222222222211 11122345777776542
Q ss_pred CCCccCCCCCCcccccCCeeeecCCceeEeeeeee-----eCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCc----
Q 012064 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-----FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH---- 386 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~---- 386 (471)
.++.+.....-...+.|+. =...|.+|+---.||+|-.||..+++.+..+....+
T Consensus 233 ----------------l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~ 296 (336)
T TIGR03118 233 ----------------LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVK 296 (336)
T ss_pred ----------------EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEE
Confidence 2222221111111333333 122466777666699999999999998888876443
Q ss_pred --ceEEEEEcC
Q 012064 387 --VVNCIEPHP 395 (471)
Q Consensus 387 --~v~~~~~s~ 395 (471)
..+.++|..
T Consensus 297 i~GLWgL~fGn 307 (336)
T TIGR03118 297 VDGLWSLTFGN 307 (336)
T ss_pred ecCeEEeeeCC
Confidence 467788865
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.50 E-value=3.6 Score=37.22 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=55.4
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC----CCEEEEe
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GDILISG 79 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~----g~~l~s~ 79 (471)
+++.|+++++++ ...|.|++++ ..+.... . +.... ............++++|+ +.+.++.
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~-~-----------v~~~~--~v~~~~~~gllgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKT-P-----------VADLP--EVFADGERGLLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECE-E-----------EEE-T--TTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcc-e-----------ecccc--cccccccCCcccceeccccCCCCEEEEEE
Confidence 567788877665 4599999999 3344310 0 00000 112344567899999995 4333333
Q ss_pred cCC--------CeEEEEECCCC-------ceEEEeecC---CCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 80 SDD--------RRVILWDWKTE-------RVKLSFHSG---HNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 80 ~~d--------~~i~iwd~~~~-------~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
+.. ..|.-|....+ +.+...... ....-..+.|.| |+.+.++.+..+.
T Consensus 71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp--DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP--DGKLYVSVGDGGN 136 (331)
T ss_dssp EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T--TSEEEEEEB-TTT
T ss_pred EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC--CCcEEEEeCCCCC
Confidence 311 24544554433 111111111 223446699999 9988777776554
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.39 E-value=2.2 Score=42.07 Aligned_cols=162 Identities=13% Similarity=0.083 Sum_probs=93.6
Q ss_pred CcEEEEecCCCeEEEEEcccCccccc-------cccceecccccceeeeeeeEEeccccccEEEEEEcC--CCCEEEEec
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTR-------NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGS 80 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--~g~~l~s~~ 80 (471)
+.+++.|. .+.|.||+...-..... ...+......|..... ....| .|+.|.... ....|+.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~----~p~PH--tIN~i~v~~lg~~EVLl~c~ 121 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLIST----WPFPH--TINFIKVGDLGGEEVLLLCT 121 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccC----CCCCc--eeeEEEecccCCeeEEEEEe
Confidence 45566655 78999999874332211 0111111111111100 00223 345554433 456889999
Q ss_pred CCCeEEEEECCC-------C----ce-------EEEeecCCCcceeEEEEe--cCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 81 DDRRVILWDWKT-------E----RV-------KLSFHSGHNDNVFQAKIM--PFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 81 ~d~~i~iwd~~~-------~----~~-------~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
.||.|.+|.+++ . .. ...+...-...+++++++ . ..++||+++....|.||-......
T Consensus 122 DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~--~~rlIAVSsNs~~VTVFaf~l~~~ 199 (717)
T PF08728_consen 122 DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK--KSRLIAVSSNSQEVTVFAFALVDE 199 (717)
T ss_pred cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC--cceEEEEecCCceEEEEEEecccc
Confidence 999999997621 1 00 001112234578899998 6 778888888888888887654211
Q ss_pred -ceeeEeeceeeeEEEEEEccCC--Cc---EEEEEecCCeEEEEec
Q 012064 141 -VETKLLGKHQGRAHKLAIEPGS--PH---VFYTCGEDGLVQHFDL 180 (471)
Q Consensus 141 -~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~i~iwd~ 180 (471)
.....-..+...|-+++|.++. +. .+++++-.|.+.+|++
T Consensus 200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1111122366788899997754 22 5677888999999887
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=94.36 E-value=3.8 Score=37.06 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=83.1
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEE-EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRL-YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (471)
..+.++.+.|+ +.++++ +..|.+.. +|-...... .........+..+.+.++++.++.+..+
T Consensus 173 g~~~~i~~~~~-g~~v~~-g~~G~i~~s~~~gg~tW~---------------~~~~~~~~~l~~i~~~~~g~~~~vg~~G 235 (334)
T PRK13684 173 GVVRNLRRSPD-GKYVAV-SSRGNFYSTWEPGQTAWT---------------PHQRNSSRRLQSMGFQPDGNLWMLARGG 235 (334)
T ss_pred ceEEEEEECCC-CeEEEE-eCCceEEEEcCCCCCeEE---------------EeeCCCcccceeeeEcCCCCEEEEecCC
Confidence 35788999997 455554 44555443 221111110 0111234578899999999988887777
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
.+++=..+.+..-.. + ..........+..+.+ .+++..+++|
T Consensus 236 ~~~~~s~d~G~sW~~-----------------------------------~-~~~~~~~~~~l~~v~~-~~~~~~~~~G- 277 (334)
T PRK13684 236 QIRFNDPDDLESWSK-----------------------------------P-IIPEITNGYGYLDLAY-RTPGEIWAGG- 277 (334)
T ss_pred EEEEccCCCCCcccc-----------------------------------c-cCCccccccceeeEEE-cCCCCEEEEc-
Confidence 654322333211100 0 0000001112667777 8887766555
Q ss_pred CCCeEEEEEccCCeeeEEec---CCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 363 DCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
.+|.+.. ....|+.-.... .-....+.+.|..+++.+++ +..|.|.-|+-.
T Consensus 278 ~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~ 331 (334)
T PRK13684 278 GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS 331 (334)
T ss_pred CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence 5676553 344444433332 22235778888777766664 467888877643
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.32 E-value=0.35 Score=40.48 Aligned_cols=64 Identities=11% Similarity=0.268 Sum_probs=49.8
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEe-------c-------CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVI-------E-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~-------~-------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
..++++|++-+.+|.+++||+.+++.+..- . .....|..+..+.+|.-+++-+ +|..+.|+.+=
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 567889999999999999999988765321 2 2446789999999998777765 57788888763
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.26 E-value=7 Score=39.67 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=69.7
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCc-------ceeEEEEec--------------CCCCeEEEEEeCCCeEE
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND-------NVFQAKIMP--------------FTDDRSIVTCAADGQVR 131 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~--------------~~~~~~l~s~~~dg~i~ 131 (471)
+..|..++.++.|.-.|..+|+.+.++...... ....+.+.. ...+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788899999999999998887322110 012233321 01345788888899999
Q ss_pred EEeccccCcceeeEeeceeeeE-------------EEEEEcc---CCCcEEEEEec----------CCeEEEEeccCCcc
Q 012064 132 HAQILERGGVETKLLGKHQGRA-------------HKLAIEP---GSPHVFYTCGE----------DGLVQHFDLRTGAA 185 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v-------------~~~~~~~---~~~~~l~~~~~----------dg~i~iwd~~~~~~ 185 (471)
-.|.++++.... +. ..+.+ ..+.-.| ++ .+++++. +|.|+-+|.++++.
T Consensus 274 ALDA~TGk~~W~--fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLCED--FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEEEE--ec-CCCceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 999888876543 11 11111 0001111 23 3555542 68899999999999
Q ss_pred ceeeee
Q 012064 186 TELFTC 191 (471)
Q Consensus 186 ~~~~~~ 191 (471)
...+..
T Consensus 349 ~W~~~~ 354 (764)
T TIGR03074 349 VWAWDP 354 (764)
T ss_pred eeEEec
Confidence 887764
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=94.04 E-value=3.3 Score=39.71 Aligned_cols=148 Identities=10% Similarity=-0.010 Sum_probs=72.0
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC--CeEEEEeccccCcceee
Q 012064 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILERGGVETK 144 (471)
Q Consensus 72 ~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~ 144 (471)
++..++.||.++ .+..||..+++-...-.......-.+++. - ++...+.|+.+ ..+..||..++......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A--NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E--CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 56778877654321110011111122222 3 77777787754 35777887655443322
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecCC---eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
.+....... +++ .-++ ++.+.||.++ .+..||.++++........ . .......+++ + +.+.+.
T Consensus 348 ~l~~~r~~~-~~~-~~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~----~----~r~~~~~~~~--~-~~IYv~ 413 (480)
T PHA02790 348 SLLKPRCNP-AVA-SINN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY----Y----PHYKSCALVF--G-RRLFLV 413 (480)
T ss_pred CCCCCCccc-EEE-EECC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCC----C----ccccceEEEE--C-CEEEEE
Confidence 222111111 122 2244 6777777653 4677888776543321110 0 0001112222 2 456666
Q ss_pred EeCCCeEEEEEcCCCccC
Q 012064 222 AGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~ 239 (471)
| |.+..||.++.++.
T Consensus 414 G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 414 G---RNAEFYCESSNTWT 428 (480)
T ss_pred C---CceEEecCCCCcEe
Confidence 5 35778998877654
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.03 E-value=0.43 Score=39.91 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=51.7
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCC-CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
+.++++-+.+|.+++||+.+.+..-.. ++.+...... .........|..+.++.+|.-+++-+++..+.|+.+-+
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~--~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP--VSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc--cccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 568888999999999999998754332 1100000000 00003456789999999999999999999999998764
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=2.3 Score=38.86 Aligned_cols=122 Identities=16% Similarity=0.307 Sum_probs=79.6
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEee---cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
..++|.++.||+|.+.||.--.+.+|.+++....+...... +.....|....|+. ..-++.....| +.+|...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEc
Confidence 45799999999999999999999999999985444322221 23344688899984 46666666554 6666654
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe-cCCeEEEEeccCCccc
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAAT 186 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 186 (471)
..+... +....|.-.|.-..|.++..-.+++.+ ..+.+.=+.++++...
T Consensus 141 pekrsl-RlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 141 PEKRSL-RLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhh-hhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 333222 225567788888899988743344444 3445555555555433
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=93.79 E-value=5 Score=36.31 Aligned_cols=160 Identities=11% Similarity=0.052 Sum_probs=85.1
Q ss_pred CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 103 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
-...+.++.+.| ++.+++++. .|.+..- ...+...-..........++++.+.++++ ++ ..+..|.+++=....
T Consensus 171 ~~g~~~~i~~~~--~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~-~vg~~G~~~~~s~d~ 244 (334)
T PRK13684 171 AAGVVRNLRRSP--DGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LW-MLARGGQIRFNDPDD 244 (334)
T ss_pred CcceEEEEEECC--CCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EE-EEecCCEEEEccCCC
Confidence 355788999998 877665554 5544321 11221111111223446788999999884 44 445667665322333
Q ss_pred CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc
Q 012064 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (471)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (471)
+..-........ .....+.++.+.|+ +..++ ++.+|.+.. ....++-- ........-..
T Consensus 245 G~sW~~~~~~~~------~~~~~l~~v~~~~~-~~~~~-~G~~G~v~~-S~d~G~tW------------~~~~~~~~~~~ 303 (334)
T PRK13684 245 LESWSKPIIPEI------TNGYGYLDLAYRTP-GEIWA-GGGNGTLLV-SKDGGKTW------------EKDPVGEEVPS 303 (334)
T ss_pred CCccccccCCcc------ccccceeeEEEcCC-CCEEE-EcCCCeEEE-eCCCCCCC------------eECCcCCCCCc
Confidence 332221111100 01124678889886 45544 556675543 33332210 00000011124
Q ss_pred ceEEEEEcCCCCeEEEeeCCcEEEEec
Q 012064 263 GITGLAFSDQSELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 263 ~i~~~~~~~~~~~l~~~~~~~i~i~d~ 289 (471)
....+.|..+++.++.+..|.|..++-
T Consensus 304 ~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 304 NFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred ceEEEEEeCCCceEEECCCceEEEecC
Confidence 577888888888999999998887764
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=2.3 Score=39.62 Aligned_cols=74 Identities=8% Similarity=-0.037 Sum_probs=41.0
Q ss_pred EEEecCCCeEEEEEcccCccccccccceecccccc--eeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDL--VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 13 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
++.+-.| .+..||.+..-+....... -.++... ...++...-...-.-.|..+..|+.|..++-+|.+|.+..+
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~-~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRG-PSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEecc-CCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 4455556 8999998855544322221 1111111 11111111111224568888999999999999999855443
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=9 Score=37.69 Aligned_cols=193 Identities=8% Similarity=0.089 Sum_probs=92.7
Q ss_pred CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCC
Q 012064 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (471)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (471)
..|+||++.. +....+.. ...++-.+.|+.+ .-|++-..+|++++|++........ +.+.+
T Consensus 64 ~~I~If~~sG-~lL~~~~w----------~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e----- 124 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILW----------KHGELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIESN-SVGFE----- 124 (829)
T ss_pred eeEEEEeccc-cchHHHHh----------cCCCeeeecccCC--ceEEEEeccceEEEeecchhhhccc-ccccc-----
Confidence 4577777643 33333322 1226788999987 4677778999999999875542211 11111
Q ss_pred CCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccc-cccccCCCCCCccCC-CCC-----
Q 012064 253 PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS-EASEMGSDHTSAASP-STA----- 325 (471)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~----- 325 (471)
.....|..+.+..+|-.+.+.++.-+.+.+..... ....+..|....+ .+....+++...... ..+
T Consensus 125 ------~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~ 197 (829)
T KOG2280|consen 125 ------SQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL 197 (829)
T ss_pred ------cccCceeEEEEecCceEEEecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh
Confidence 11233555555556644444433333443333211 1111111111111 122222221111100 000
Q ss_pred ----CcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec--CCCcceEEEEEcC
Q 012064 326 ----NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--ADRHVVNCIEPHP 395 (471)
Q Consensus 326 ----~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~s~ 395 (471)
..........+.... ..+..+.. ||+.++|+--...|.|++-+....+....+. .|. +...++|.-
T Consensus 198 ~~~q~~~~~~q~~~~~~~~--~~~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcg 269 (829)
T KOG2280|consen 198 HICQVEESRVQLHALSWPN--SSVVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCG 269 (829)
T ss_pred cccceecccccccccCCCC--ceEEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeec
Confidence 000011111111111 22677777 9999999999999999998877666555554 222 223555543
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.21 E-value=3.3 Score=38.53 Aligned_cols=62 Identities=13% Similarity=0.252 Sum_probs=46.8
Q ss_pred CCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
...+++.++..|.|++||--...... .+++....|..+..+.+|+.++++| ...+.+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKt--alP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKT--ALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhh--cCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 56799999999999999964443332 3777888999999999997655554 34677777653
No 448
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.81 E-value=13 Score=38.09 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=106.0
Q ss_pred EEEecCCCeEEEEECCCCceEEEee-------cCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEeccccC------
Q 012064 76 LISGSDDRRVILWDWKTERVKLSFH-------SGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERG------ 139 (471)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~------ 139 (471)
++.-...|.+++|=.+......... ..-...++..++.+..+|+.++.+..+ +.|++|.+.-.-
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 4445677899998763222222211 123456676666644367666555544 788887653110
Q ss_pred ----cceeeEee--------c-------------eeeeEEEEEEcc------CCCcEEEEEec----CCeEEEEeccCCc
Q 012064 140 ----GVETKLLG--------K-------------HQGRAHKLAIEP------GSPHVFYTCGE----DGLVQHFDLRTGA 184 (471)
Q Consensus 140 ----~~~~~~~~--------~-------------~~~~v~~~~~~~------~~~~~l~~~~~----dg~i~iwd~~~~~ 184 (471)
......+. . .-..++.+.|-+ ..+.++++.+. ...|.-|.++...
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence 00111111 0 112456666654 23344444432 3469999987643
Q ss_pred cceeeeecccC----------------CcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC-CCCCC
Q 012064 185 ATELFTCRPID----------------DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQP 247 (471)
Q Consensus 185 ~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~ 247 (471)
..-.....+.. ..........|.++....- +..++....||+|.++|..+.+..... ..+.+
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 21100000000 0001112345667776666 568899999999999999988765544 11111
Q ss_pred CC---cCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEE
Q 012064 248 AD---YFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (471)
Q Consensus 248 ~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~ 285 (471)
.. ........-.....+..++|||.+-.++.-. ++.+.
T Consensus 304 ~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 10 0000000111112456789999987777665 55544
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.55 E-value=3.3 Score=37.91 Aligned_cols=117 Identities=10% Similarity=0.118 Sum_probs=69.9
Q ss_pred CeEEEEECCC--CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee--eEeeceeeeEEEEEE
Q 012064 83 RRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET--KLLGKHQGRAHKLAI 158 (471)
Q Consensus 83 ~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~ 158 (471)
|.+.=|-++. ......+....+++|.++.|++ |.+.++.-..+++|.+++....+.... ...+..+..|.+..|
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCCceeEEEecc--CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 3344554432 2334455456778999999999 999999999999999999844433221 112333456888899
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCc-cceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
.... . ++..+..| +-+|.....+ .++..+. +...|+-..|+|+
T Consensus 121 ~~s~-e-~A~i~~~G-~e~y~v~pekrslRlVks----------~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 121 TSST-E-IAFITDQG-IEFYQVLPEKRSLRLVKS----------HNLNVNWYMYCPE 164 (657)
T ss_pred ecCe-e-EEEEecCC-eEEEEEchhhhhhhhhhh----------cccCccEEEEccc
Confidence 8765 3 34333332 4555433221 1111111 4446778888887
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.26 E-value=0.89 Score=26.01 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=27.7
Q ss_pred CCCcEEEEee-CCCeEEEEEccCCeeeEEecCCCcceEEEEE
Q 012064 353 PKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 353 ~~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (471)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677676654 5789999999988888777652 33444444
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.20 E-value=0.45 Score=47.00 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=45.2
Q ss_pred eCCCCcEEEEeeCCCeEEEEEcc-----CCeeeEEecCCCcc-eEEEEEcCCC---------CEEEEeec-CCcEEEecC
Q 012064 351 FGPKCEYVVSGSDCGRIFIWKKK-----GGELIRVIEADRHV-VNCIEPHPHS---------TVLASSGI-ESDIKILTP 414 (471)
Q Consensus 351 ~s~~g~~l~~g~~dg~v~iwd~~-----~~~~~~~~~~h~~~-v~~~~~s~~~---------~~l~s~~~-dg~i~iw~~ 414 (471)
.+|||..++++..||.+++|.+. ...++..++.|.+. -.|.-|+... .+++++++ +..+++|.-
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 49999999999999999888753 22445566777642 2222233221 24455544 556999998
Q ss_pred CCCCCc
Q 012064 415 NAADRA 420 (471)
Q Consensus 415 ~~~~~~ 420 (471)
..-++.
T Consensus 323 a~w~Cl 328 (1283)
T KOG1916|consen 323 APWQCL 328 (1283)
T ss_pred cchhhh
Confidence 776654
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.05 E-value=9 Score=34.59 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=85.6
Q ss_pred CcceeEEEEecCCCCeEEEEEeCCCe------EEEEeccccC-c---c---eeeEeeceee--------eEEEEEEccCC
Q 012064 104 NDNVFQAKIMPFTDDRSIVTCAADGQ------VRHAQILERG-G---V---ETKLLGKHQG--------RAHKLAIEPGS 162 (471)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~~-~---~---~~~~~~~~~~--------~v~~~~~~~~~ 162 (471)
-+.+..+.+.| ++..+++.+++|. +...++.... . + ....+....+ ...+|++.+++
T Consensus 19 ~GGlSgl~~~~--~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDP--DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeC--CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 35677888886 5556666666666 5555544311 0 0 0011111111 34578886666
Q ss_pred CcEEEEEecC------CeEEEEeccCCccceeeeecccCCc-----CcceeeeeeEEEEEcCCCCceEEEEeCCC-----
Q 012064 163 PHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAGSDE----- 226 (471)
Q Consensus 163 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----- 226 (471)
.++++.-.+ ..|+.++.. ++....+..+..... ..........+++++|+ +..|+++.+..
T Consensus 97 -~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 97 -SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFAAMESPLKQDG 173 (326)
T ss_pred -CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEEEECccccCCC
Confidence 565655555 678888876 666555533222100 23335667899999999 55455443222
Q ss_pred ---------eEEEEEcCCCc---cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe
Q 012064 227 ---------YTRLYDIRKYK---WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 227 ---------~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
.++++...... ....+.+. .+. .........+..+.+-+++++|+.-
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~--ld~----~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYP--LDP----PPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEe--CCc----cccccCCCCceeEEEECCCcEEEEE
Confidence 14444443221 11111110 000 0000035678889999999887754
No 453
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.03 E-value=7.1 Score=33.36 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=135.2
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA 185 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 185 (471)
.-+.++-.| ||..-+++...+.|--.|..+++.... --+....-..+..-||+... ++-+ ...|.-+|.++.+.
T Consensus 63 ap~dvapap--dG~VWft~qg~gaiGhLdP~tGev~~y--pLg~Ga~Phgiv~gpdg~~W-itd~-~~aI~R~dpkt~ev 136 (353)
T COG4257 63 APFDVAPAP--DGAVWFTAQGTGAIGHLDPATGEVETY--PLGSGASPHGIVVGPDGSAW-ITDT-GLAIGRLDPKTLEV 136 (353)
T ss_pred CccccccCC--CCceEEecCccccceecCCCCCceEEE--ecCCCCCCceEEECCCCCee-EecC-cceeEEecCcccce
Confidence 445566777 888888888888888888877765442 22334455677888888533 3222 22566667666543
Q ss_pred ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC---------CeEEEEEcCCCccCCCCCCCCCCCcCCCCcc
Q 012064 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (471)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (471)
. .+..... ..........|++. +++-+++... +.|++|+...
T Consensus 137 t-~f~lp~~------~a~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------------------- 187 (353)
T COG4257 137 T-RFPLPLE------HADANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQ--------------------- 187 (353)
T ss_pred E-Eeecccc------cCCCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCC---------------------
Confidence 2 2322211 13446788899998 5666665421 2344444432
Q ss_pred cCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCee
Q 012064 257 IGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (471)
Q Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (471)
...-..++-.|+|...++.- .+.|-..|...+..... . ....
T Consensus 188 ----G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~-p--------------------------------~P~~ 230 (353)
T COG4257 188 ----GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVV-P--------------------------------QPNA 230 (353)
T ss_pred ----CCCCcceEECCCCcEEEEeccccceEEcccccCCccee-c--------------------------------CCCc
Confidence 22346788899998665544 55677777655421100 0 0000
Q ss_pred eecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee-EEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 336 ~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
+ +.. ...+- .+|-|+.-++-...+.++-||-....-. ..|.+....-.++.....++...+--..|.|.-+|.
T Consensus 231 ~--~~g---sRriw-sdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdp 304 (353)
T COG4257 231 L--KAG---SRRIW-SDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDP 304 (353)
T ss_pred c--ccc---ccccc-cCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCc
Confidence 0 111 12222 2677777777666778888876543311 233444445566666666665554445566777777
Q ss_pred CCCCCcccC
Q 012064 415 NAADRATLP 423 (471)
Q Consensus 415 ~~~~~~~~~ 423 (471)
++.+...++
T Consensus 305 eta~ftv~p 313 (353)
T COG4257 305 ETARFTVLP 313 (353)
T ss_pred ccceEEEec
Confidence 665554443
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.99 E-value=6.1 Score=32.51 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=87.4
Q ss_pred CEEEEecCCCeEEEEECCC--CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC------eEEEEe-ccccCcceee
Q 012064 74 DILISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG------QVRHAQ-ILERGGVETK 144 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iwd-~~~~~~~~~~ 144 (471)
+.|..+.....|.+|++.. .+...++ .--+.|..+.++. .|+++++--.+. .+|+|- .+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~---- 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE---- 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhhhcc----
Confidence 3443335557899999983 3344555 3448899999999 999999864432 455542 111100
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
...++.. ..- | + -+.++..+.. +.....++.+ ....+.+++..|-.|++++ |+
T Consensus 101 ----~~~~v~v-Ria--G-~-~v~~~~~~~~-------~~qleiiElP---------l~~~p~ciaCC~~tG~LlV-g~- 153 (215)
T PF14761_consen 101 ----ENSPVRV-RIA--G-H-RVTPSFNESS-------KDQLEIIELP---------LSEPPLCIACCPVTGNLLV-GC- 153 (215)
T ss_pred ----cCCcEEE-EEc--c-c-ccccCCCCcc-------ccceEEEEec---------CCCCCCEEEecCCCCCEEE-Ec-
Confidence 0111110 000 1 0 0111111100 1111111111 2225688999998776665 33
Q ss_pred CCeEEEEEcCCCccC-CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecC
Q 012064 225 DEYTRLYDIRKYKWD-GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (471)
Q Consensus 225 dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~ 290 (471)
++.+.+|.+...... ....+ -.+..........-....+++. +.|+|..++..++++.+.
T Consensus 154 ~~~l~lf~l~~~~~~~~~~~~----lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 154 GNKLVLFTLKYQTIQSEKFSF----LDFERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred CCEEEEEEEEEEEEecccccE----EechhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 567999988765431 11110 0011111111112234555554 458898888888887653
No 455
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.77 E-value=11 Score=34.99 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceE-EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
.+....+..++||.+++.+.....++-|| .|+.. ..........+..+.|.+ ++..++++..-+.+.--|-....
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~--dg~l~l~g~~G~l~~S~d~G~~~ 313 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA--DGGLWLLTRGGGLYVSKGTGLTE 313 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC--CCCEEEEeCCceEEEecCCCCcc
Q ss_pred ---cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 140 ---GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 140 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
.............+.++.|.+++. ++.++..|.+....-............. -....+.+.|.++
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s~D~G~tW~~~~~~~~--------~~~~ly~v~f~~~-- 381 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRSTDGGKSWKRDKGADN--------IAANLYSVKFFDD-- 381 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEeCCCCcceeEccccCC--------CCcceeEEEEcCC--
Q ss_pred ceEEEEeCCCeEEEE
Q 012064 217 NLFAVAGSDEYTRLY 231 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~ 231 (471)
......+.+|.|.-|
T Consensus 382 ~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 KKGFVLGNDGVLLRY 396 (398)
T ss_pred CceEEEeCCcEEEEe
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.25 E-value=3.4 Score=33.18 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=23.6
Q ss_pred EeeeeeeeCCCC------cEEEEeeCCCeEEEEEcc
Q 012064 344 TVKGVNFFGPKC------EYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 344 ~i~~~~~~s~~g------~~l~~g~~dg~v~iwd~~ 373 (471)
.+..++| ||-| -+||+-+.+|.|.||.-.
T Consensus 87 ~vv~~aW-SP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAW-SPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEE-CCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 3888998 8854 478888999999999865
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.74 E-value=22 Score=36.59 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=57.2
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc-c-CCCccceEEEEEcCCCCeEEEee
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-I-GDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
..+...++|+|.....||+....|...+|++..........+... ...+ ..+ . ......-..+.|.++-..|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~-~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLS-RNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeec-cCCC-ccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 345678999998778999999999999999932221111111000 0000 001 0 11123456889999988999999
Q ss_pred CCcEEEEecCCC
Q 012064 281 DEFIYLFTQDMG 292 (471)
Q Consensus 281 ~~~i~i~d~~~~ 292 (471)
...+.++|+++.
T Consensus 223 r~~l~~~d~~~~ 234 (765)
T PF10214_consen 223 RSKLMLIDFESN 234 (765)
T ss_pred CCceEEEECCCC
Confidence 999999999875
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.60 E-value=0.038 Score=50.15 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=95.9
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccC
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERG 139 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~ 139 (471)
-..-....|-|.+.-++.++.+..+..||- .++..... ..++....++|.. ++..++ .+-..+.+.+||+.+..
T Consensus 34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~--n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILEL--NPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ccccceeeEecCCCceehhhhhhHHHhhhh-hcceeccc--CCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhh
Confidence 333445667787777888888888999994 45544443 4556777888987 666554 45567899999997654
Q ss_pred cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
..+...-..|.... +.|++..+ .++.+...|.+.+++..+.+....... |..++.++++.+. .+.
T Consensus 109 tqqLE~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gk----------h~RRgtq~av~lE--d~v 173 (615)
T KOG2247|consen 109 TQQLESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGK----------HQRRGTQIAVTLE--DYV 173 (615)
T ss_pred HHHHhccCcchHHH--HhhccCCc-cccccccccceEEEeccchhhhhhhcc----------cccceeEEEeccc--cee
Confidence 43321111222333 77888875 567888899999999877665443321 4446788999886 355
Q ss_pred EEEeCCC
Q 012064 220 AVAGSDE 226 (471)
Q Consensus 220 ~~~~~dg 226 (471)
+.++.|.
T Consensus 174 il~dcd~ 180 (615)
T KOG2247|consen 174 ILCDCDN 180 (615)
T ss_pred eecCcHH
Confidence 5555443
No 459
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.40 E-value=19 Score=35.43 Aligned_cols=173 Identities=11% Similarity=0.092 Sum_probs=90.4
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--EEEeecCCCcceeEEEEecCC----CCeEEEEEeC-C---CeE
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFT----DDRSIVTCAA-D---GQV 130 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~~~l~s~~~-d---g~i 130 (471)
.+.|-.+.|.++++.+++.-.+|.|.+||...+.. +......+...+.--+|-+.. ...++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 57788999999999999999999999999933322 112222233322211333311 1344444443 2 246
Q ss_pred EEEec--cccCcceeeEeeceeeeEEEEEEcc-CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 131 RHAQI--LERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 131 ~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
+++.+ .............+........|.- +| .+ +-- .++.|.+|++..-+....+......... . ..+.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G-~L-Y~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~---~-~~~v 281 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFG-KL-YQL-SKKTISSYSIPNFQIQKTISLPSIIDKE---S-DDLV 281 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCC-EE-EEE-eCCEEEEEEcCCceEEEEEEechhhccc---c-ccce
Confidence 67776 2222111100011111222222322 34 22 222 7789999999888877777665332211 0 1223
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCC
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (471)
++.- |. .++++.+ .+..|++.|+.-........
T Consensus 282 Sl~~-~s-~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 282 SLKP-PS-PNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred Eeec-CC-CCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 3321 22 3344443 46689999998776555443
No 460
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.35 E-value=17 Score=34.81 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=58.6
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCC--CcceeEEEEecCCCCeEEEEEe--------------CCC--
Q 012064 67 VSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGH--NDNVFQAKIMPFTDDRSIVTCA--------------ADG-- 128 (471)
Q Consensus 67 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~--------------~dg-- 128 (471)
+...++|.+++..+ ..+..+|+. |+.+....... ...=..+...| +|++|+.+. .|.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~--nGn~L~l~~~~~~~~~~~~~~~~~D~Iv 227 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP--NGNLLILASETKYVDEDKDVDTVEDVIV 227 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T--TS-EEEEEEETTEE-TS-EE---S-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC--CCCEEEEEeecccccCCCCccEecCEEE
Confidence 66678998887655 678888875 66554442111 01124566777 888888777 121
Q ss_pred -------eEEEEeccccCcceee------E---e---ecee--eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccce
Q 012064 129 -------QVRHAQILERGGVETK------L---L---GKHQ--GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE 187 (471)
Q Consensus 129 -------~i~iwd~~~~~~~~~~------~---~---~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 187 (471)
.+..||+.+--..... . . .... -.++++.+.+.+..+++++-.-..|...|.++++...
T Consensus 228 evd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 228 EVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp EE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 2334444321100000 0 0 0000 2478899998554666666556689999988888776
Q ss_pred eeee
Q 012064 188 LFTC 191 (471)
Q Consensus 188 ~~~~ 191 (471)
.+..
T Consensus 308 ilg~ 311 (477)
T PF05935_consen 308 ILGP 311 (477)
T ss_dssp EES-
T ss_pred EeCC
Confidence 6653
No 461
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.20 E-value=24 Score=36.26 Aligned_cols=175 Identities=10% Similarity=-0.003 Sum_probs=95.2
Q ss_pred CCCcceeEEEEe---cCCC-CeEEEEEeCCCeEEEEeccccCc----------c---eeeEeec---eeeeEEEEEEccC
Q 012064 102 GHNDNVFQAKIM---PFTD-DRSIVTCAADGQVRHAQILERGG----------V---ETKLLGK---HQGRAHKLAIEPG 161 (471)
Q Consensus 102 ~~~~~v~~~~~~---~~~~-~~~l~s~~~dg~i~iwd~~~~~~----------~---~~~~~~~---~~~~v~~~~~~~~ 161 (471)
....+|..++|. ...+ ...++..-....+.|+...-.+. + ....+.. ...+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456688888887 2101 21234444455677777221111 0 0001111 1235678999998
Q ss_pred CCcEEEEEecCCeEEEEeccCCccc--eeeee--cccCCc-CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAAT--ELFTC--RPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~--~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
....|+.....|...+||+...... ..+.. ...... ........-..+.|.++ .+.|++++ ...+.++|+++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~-~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD-SNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC-CCEEEEEc-CCceEEEECCCC
Confidence 8788999999999999999222111 11111 110000 00001123457888887 45565554 456899999876
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEeeCCcEEEEecCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~d~~~ 291 (471)
..... -........|..+.-+|+. .++..-....|...++..
T Consensus 235 ~~~~~-------------l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEY-------------LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred Cccch-------------hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 52110 1122335678888888862 344444556777777766
No 462
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.00 E-value=12 Score=32.41 Aligned_cols=189 Identities=10% Similarity=0.045 Sum_probs=107.2
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
+.++..+..+.-++|.|+.+...+. ++..+.- .+--.++.. .|++...+..|.-+.+.|
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~------------------~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivd 154 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPT------------------LIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVD 154 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcc------------------eeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEE
Confidence 4456666777889999998776552 1112221 133344444 588888888555577888
Q ss_pred CCCCce---EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEE
Q 012064 90 WKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (471)
Q Consensus 90 ~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (471)
+.+.+. ..+. ......-..++. .|++-..+..|+-+.+-|+..........-......+.++..+++- .+
T Consensus 155 vsdpssP~lagry-a~~~~d~~~v~I----SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr--~y 227 (370)
T COG5276 155 VSDPSSPQLAGRY-ALPGGDTHDVAI----SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR--AY 227 (370)
T ss_pred CCCCCCceeeeee-ccCCCCceeEEE----ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe--eE
Confidence 876543 2222 223333456666 4567777778889999999776554321111122256777777654 22
Q ss_pred EEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
++ -.+--+.+-|..+.+....+...+.. ....+..+..+ +++......+..+.+-|+.+.
T Consensus 228 ~v-vy~egvlivd~s~~ssp~~~gsyet~------~p~~~s~v~Vs---~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 228 LV-VYDEGVLIVDVSGPSSPTVFGSYETS------NPVSISTVPVS---GEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EE-EcccceEEEecCCCCCceEeeccccC------Ccccccceecc---cceeeeeccccCceeEeccCC
Confidence 33 33444677777776655554433211 11122223333 456666666777777777654
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.90 E-value=0.028 Score=50.99 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=89.6
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE-EecCCCeEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI-SGSDDRRVIL 87 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~-s~~~d~~i~i 87 (471)
++.-++.++.+-.+..||-. |+... .+ .-.+....++|..+|..++ .+-..+.+.+
T Consensus 45 e~~nlavaca~tiv~~YD~a-gq~~l---------------------e~-n~tg~aldm~wDkegdvlavlAek~~piyl 101 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKA-GQVIL---------------------EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYL 101 (615)
T ss_pred CCCceehhhhhhHHHhhhhh-cceec---------------------cc-CCchhHhhhhhccccchhhhhhhcCCCeee
Confidence 33346666667777777755 43331 11 1245566788888886554 4556788999
Q ss_pred EECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEE
Q 012064 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (471)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (471)
||+.+... .++..+-+..-.-+.|++ ....++.+...|.+.+++..+.+.... ...|...+.++++.+.+ . .+
T Consensus 102 wd~n~eyt-qqLE~gg~~s~sll~wsK--g~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~RRgtq~av~lEd-~-vi 174 (615)
T KOG2247|consen 102 WDVNSEYT-QQLESGGTSSKSLLAWSK--GTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQRRGTQIAVTLED-Y-VI 174 (615)
T ss_pred chhhhhhH-HHHhccCcchHHHHhhcc--CCccccccccccceEEEeccchhhhhh--hcccccceeEEEecccc-e-ee
Confidence 99976442 222122222222277998 888888888899999999877766554 55599999999999987 3 45
Q ss_pred EEecCCeEE
Q 012064 168 TCGEDGLVQ 176 (471)
Q Consensus 168 ~~~~dg~i~ 176 (471)
.++.|..+.
T Consensus 175 l~dcd~~L~ 183 (615)
T KOG2247|consen 175 LCDCDNTLS 183 (615)
T ss_pred ecCcHHHHH
Confidence 555554433
No 464
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.83 E-value=16 Score=34.37 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.7
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
..+.+++..+. .+++++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~-r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPS-RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETT-TTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCC-cCEEEEEeCCCcEEEEEEeC
Confidence 34889999998 58999999999999999975
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=21 Score=37.76 Aligned_cols=151 Identities=11% Similarity=0.192 Sum_probs=84.2
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEE--------EecCCCCeEEEEEeCCCeEEEEeccccCccee-------e
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAK--------IMPFTDDRSIVTCAADGQVRHAQILERGGVET-------K 144 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~ 144 (471)
+-|+.+.+|+.+++.....+ .+-...|..+. |.| .=++++..+.--.|.++-+.-.+.... .
T Consensus 96 TiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~--~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVP--EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchh--hhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 35678999999997665555 45555555554 333 344555555555666665533222110 1
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc------ccee--------eeecccCCcCcceeeeeeEEEE
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA------ATEL--------FTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~--------~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
.+......|.++....+| ++ +-+|.||.|+=.-..... +.+. .-.+...... ..+..+|..++
T Consensus 173 ~i~~dg~~V~~I~~t~nG-RI-F~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENG-RI-FFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCC-cE-EEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeE
Confidence 122234568888877777 45 555666644322221111 0000 0000001111 11455799999
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 211 IDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
.+.. ..++.+-++.|.|..||+....
T Consensus 250 ID~S-R~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 250 IDNS-RNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eccc-cceeeeeccCceEEEEEccCCC
Confidence 9987 6789999999999999998743
No 466
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.58 E-value=13 Score=32.39 Aligned_cols=230 Identities=13% Similarity=0.115 Sum_probs=116.8
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCC----cc-ceeeeecccCCcCcceeeeeeEEEEEcCC-----------C
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG----AA-TELFTCRPIDDRRNYMTVVNLNAIAIDPR-----------N 215 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----------~ 215 (471)
.-+.++++|.+. +.++...-+...+||.... .. ........... .......+.+.|+.. +
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~---~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP---LAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCC---CCCCCCccEEEEeCCCceEEcCCCccc
Confidence 357899999984 6676677788999998611 11 11111111111 001223556666532 1
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccC-CC-ccceEEEEEcC--CCCeEEEee--CCcEEEEec
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DE-QVGITGLAFSD--QSELLVSYN--DEFIYLFTQ 289 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~--~~~~l~~~~--~~~i~i~d~ 289 (471)
...++.+++||+|.-|...-....-. ....... .. ..-...+++.. .+.+|..+. +++|.+||-
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~----------~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT----------RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc----------ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 23467788999999998543321000 0000111 11 12234455553 356666665 678999986
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
.-.+....-.+..... ...-...-++.-.....|+-..- .++++.=+.|-.-|.|-+
T Consensus 170 ~f~~~~~~g~F~DP~i----------------------PagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 170 SFRPPPLPGSFIDPAL----------------------PAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNV 226 (336)
T ss_pred ccccccCCCCccCCCC----------------------CCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEE
Confidence 5432111100000000 00000000011111112222222 444444445555689999
Q ss_pred EEccCCeeeEEec--CCCcceEEEEEcC------CCCEEEEeecCCcEEEecCCCCCC
Q 012064 370 WKKKGGELIRVIE--ADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 370 wd~~~~~~~~~~~--~h~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
||+ .|++++++. +.-...+.|+..| .+.+|+--=-||+|..+|..+++.
T Consensus 227 Fd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 227 FTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred EcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 998 678887773 2234566777755 355666555699999999987764
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.53 E-value=16 Score=33.32 Aligned_cols=196 Identities=14% Similarity=0.189 Sum_probs=104.2
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEec--CCCCeE--EEEEe-CC---CeEEEEeccccCcce
Q 012064 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMP--FTDDRS--IVTCA-AD---GQVRHAQILERGGVE 142 (471)
Q Consensus 71 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~iwd~~~~~~~~ 142 (471)
|...+++...+++-+.+||++ |+.+..+..+ ..+.+..-. .-+++. |+.++ .+ .+|++|.+.......
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 345677777888889999986 6666666333 333332211 003433 34443 22 479999886432221
Q ss_pred eeE------eeceeeeEEEEEEc--c-CCCcEEEEEecCCeEEEEeccC---Cc----cceeeeecccCCcCcceeeeee
Q 012064 143 TKL------LGKHQGRAHKLAIE--P-GSPHVFYTCGEDGLVQHFDLRT---GA----ATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 143 ~~~------~~~~~~~v~~~~~~--~-~~~~~l~~~~~dg~i~iwd~~~---~~----~~~~~~~~~~~~~~~~~~~~~v 206 (471)
... +......+..+|+- + ++...++....+|.+.-|.+.. +. .++.+. -...+
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-----------~~sQ~ 210 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-----------VGSQP 210 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE------------SS-E
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-----------CCCcc
Confidence 110 11112346777763 3 4555677788899888887752 22 233333 23357
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc-cCCCccceEEEEEc--CCC-CeEEEee--
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFS--DQS-ELLVSYN-- 280 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~--~~~-~~l~~~~-- 280 (471)
..+..+.. ...|+.+-++.-|.-|+.+-..-... ...... -.+....+..+++- +++ .||+.++
T Consensus 211 EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~---------~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 211 EGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDR---------TLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EEEEEETT-TTEEEEEETTTEEEEEESSCCC-S-----------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred eEEEEecc-cCCEEEecCccEEEEEecCCCCCCcc---------eeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 78888877 56888899998888888763321100 000000 11223567777764 344 3666666
Q ss_pred CCcEEEEecCC
Q 012064 281 DEFIYLFTQDM 291 (471)
Q Consensus 281 ~~~i~i~d~~~ 291 (471)
+++..+|+.+.
T Consensus 281 ~~sf~Vy~r~~ 291 (381)
T PF02333_consen 281 DNSFAVYDREG 291 (381)
T ss_dssp GTEEEEEESST
T ss_pred CCeEEEEecCC
Confidence 45799999865
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.46 E-value=1.4 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=23.2
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeee
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFT 190 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 190 (471)
|++++++++...++.|.++|..+++....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4665666666678999999998887666554
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=12 Score=39.39 Aligned_cols=181 Identities=10% Similarity=0.116 Sum_probs=89.2
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE--------EEcCCCCceEEEEeCC
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI--------AIDPRNANLFAVAGSD 225 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~p~~~~~l~~~~~d 225 (471)
..+-+.|.=.+ +-.+.|+.+.+|+.+++.....+.... ..|..+ .|.|.=.++|+.++ -
T Consensus 82 ~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~~s----------htIl~V~LvkPkpgvFv~~IqhlLvvaT-~ 148 (1311)
T KOG1900|consen 82 TDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDGLS----------HTILKVGLVKPKPGVFVPEIQHLLVVAT-P 148 (1311)
T ss_pred eeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccchh----------hhheeeeeecCCCCcchhhhheeEEecc-c
Confidence 33444444323 334568889999999966554443211 112222 23333123344443 3
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC--CCCCCCCCCCCc
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM--GLGPNPPPSSPV 303 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~--~~~~~~~~~~~~ 303 (471)
-.|.++-+...+....... +.......-....|+++....+|+.+.+|.+|.++-.-... +-..........
T Consensus 149 ~ei~ilgV~~~~~~~~~~~------f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 149 VEIVILGVSFDEFTGELSI------FNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred ceEEEEEEEeccccCcccc------cccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccC
Confidence 3466665543322111100 00001111224568999989999999999999654332222 100000000000
Q ss_pred cccccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
....... -... +..+. .+.. +|..+.. +...+.+.+-++.|+|++||+..
T Consensus 223 t~s~ls~-----------------lvPs-~~~~~~~~~d--pI~qi~I-D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 223 TKSVLSS-----------------LVPS-LLSVPGSSKD--PIRQITI-DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred chhHHHH-----------------hhhh-hhcCCCCCCC--cceeeEe-ccccceeeeeccCceEEEEEccC
Confidence 0000000 0001 11222 3333 3888887 77778889999999999999965
No 470
>PLN02153 epithiospecifier protein
Probab=88.96 E-value=18 Score=32.95 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=53.2
Q ss_pred CCCEEEEecCC-----------CeEEEEECCCCceEEEeecCC-----CcceeEEEEecCCCCeEEEEEeCC--------
Q 012064 72 DGDILISGSDD-----------RRVILWDWKTERVKLSFHSGH-----NDNVFQAKIMPFTDDRSIVTCAAD-------- 127 (471)
Q Consensus 72 ~g~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d-------- 127 (471)
++++.+.|+.+ ..+.+||..+.+-. .+ ... ...-.+++. - +++.++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l-~~~~~~~~~r~~~~~~~-~--~~~iyv~GG~~~~~~~gG~ 211 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV-QL-PDPGENFEKRGGAGFAV-V--QGKIWVVYGFATSILPGGK 211 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe-eC-CCCCCCCCCCCcceEEE-E--CCeEEEEeccccccccCCc
Confidence 56666777653 25778888765421 11 111 111112222 2 56666655432
Q ss_pred -----CeEEEEeccccCcceeeEe---eceeeeEEEEEEccCCCcEEEEEecC--------------CeEEEEeccCCcc
Q 012064 128 -----GQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPGSPHVFYTCGED--------------GLVQHFDLRTGAA 185 (471)
Q Consensus 128 -----g~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~ 185 (471)
..+.+||+.+.+....... +.... ..++. ..++ ++++.|+.. ..+..+|+++.+-
T Consensus 212 ~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~-~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 212 SDYESNAVQFFDPASGKWTEVETTGAKPSARS-VFAHA-VVGK-YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred cceecCceEEEEcCCCcEEeccccCCCCCCcc-eeeeE-EECC-EEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 3578888887766543211 10111 11222 2234 677888752 2577888876654
Q ss_pred c
Q 012064 186 T 186 (471)
Q Consensus 186 ~ 186 (471)
.
T Consensus 289 ~ 289 (341)
T PLN02153 289 E 289 (341)
T ss_pred E
Confidence 3
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.85 E-value=14 Score=32.39 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=55.7
Q ss_pred CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec------CCCeEEEEECCCC
Q 012064 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------DDRRVILWDWKTE 93 (471)
Q Consensus 20 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~------~d~~i~iwd~~~~ 93 (471)
..|++||.++.+... --.+-.+.|+.+.|..+.++++.|. ....+..||+++.
T Consensus 16 ~~lC~yd~~~~qW~~---------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS---------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCCCEeec---------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 468999998766551 1223468899999986667777664 3457888998766
Q ss_pred ceEEEeec----CCCcceeEEEEecCCCCe-EEEEEe-CCC--eEEEEe
Q 012064 94 RVKLSFHS----GHNDNVFQAKIMPFTDDR-SIVTCA-ADG--QVRHAQ 134 (471)
Q Consensus 94 ~~~~~~~~----~~~~~v~~~~~~~~~~~~-~l~s~~-~dg--~i~iwd 134 (471)
.- ..+.. .-.++|..+.+... |+. ..+.|. .+| .|..||
T Consensus 75 ~w-~~~~~~~s~~ipgpv~a~~~~~~-d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 75 TW-SSLGGGSSNSIPGPVTALTFISN-DGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred ee-eecCCcccccCCCcEEEEEeecc-CCceEEEeceecCCCceEEEEc
Confidence 53 23312 12467888877542 333 343433 233 355554
No 472
>PLN02153 epithiospecifier protein
Probab=88.41 E-value=19 Score=32.70 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=72.4
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceEEEeec------CCCcceeEEEEecCCCCeEEEEEeCC-----------Ce
Q 012064 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAAD-----------GQ 129 (471)
Q Consensus 72 ~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~d-----------g~ 129 (471)
++++++.|+.+ ..+.+||..+.+-. .+.. .....-.+++. - +++.++.|+.+ ..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~p~~R~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT-FLTKLDEEGGPEARTFHSMAS-D--ENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE-EeccCCCCCCCCCceeeEEEE-E--CCEEEEECCccCCCccCCCcccce
Confidence 46677777753 35778888765431 1110 01111112222 2 66777777653 24
Q ss_pred EEEEeccccCcceeeEeec--eeeeEEEEEEccCCCcEEEEEecC-------------CeEEEEeccCCccceeeeeccc
Q 012064 130 VRHAQILERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGED-------------GLVQHFDLRTGAATELFTCRPI 194 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~ 194 (471)
+.+||..+........... ....-.+++. -++ ++++.++.+ ..+.+||+++.+-...-.....
T Consensus 161 v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~ 238 (341)
T PLN02153 161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK 238 (341)
T ss_pred EEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECC-eEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCC
Confidence 6778887665543211100 0000011222 234 455555432 4588889887765433211100
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCC--------------CeEEEEEcCCCccC
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------------EYTRLYDIRKYKWD 239 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------------g~i~i~d~~~~~~~ 239 (471)
+. ......++.+ + +.+++.|+.. ..+..||+.+.+..
T Consensus 239 P~-----~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 239 PS-----ARSVFAHAVV--G-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CC-----CcceeeeEEE--C-CEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 10 0011122222 2 4677777742 25788888877643
No 473
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.37 E-value=1.4 Score=43.17 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=28.9
Q ss_pred ccEEEEEEcC----CCCEEEEecCCCeEEEEECCCCceEEEe
Q 012064 62 GCVNTVSFNT----DGDILISGSDDRRVILWDWKTERVKLSF 99 (471)
Q Consensus 62 ~~V~~~~~s~----~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (471)
+.+..+++++ +..+|++-+.|+++|+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455666666 6789999999999999999999997665
No 474
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.32 E-value=19 Score=32.46 Aligned_cols=110 Identities=8% Similarity=0.009 Sum_probs=55.7
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceE---EEeec-CCCcceeEEEEecCCCCeEEEEEeCC-----CeEEEEeccc
Q 012064 72 DGDILISGSDD-----RRVILWDWKTERVK---LSFHS-GHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILE 137 (471)
Q Consensus 72 ~g~~l~s~~~d-----~~i~iwd~~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 137 (471)
++.+++.|+.+ ..+..+|+.+.+-. ..... .....-.+++.. +++..+.|+.. ..+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCC
Confidence 55666777754 35667777665421 11110 111111222222 66777777642 3578888877
Q ss_pred cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC----eEEEEeccCCccc
Q 012064 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAAT 186 (471)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~ 186 (471)
.+......+... ......+...++ ++++.|+.++ .+..||+++.+..
T Consensus 149 ~~W~~~~~~p~~-~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 149 QEWFELPDFPGE-PRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCeeECCCCCCC-CCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCeeE
Confidence 766443212211 111112222344 6778887664 3567888876543
No 475
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.20 E-value=25 Score=33.76 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=75.2
Q ss_pred CCEEEEe---cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece
Q 012064 73 GDILISG---SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149 (471)
Q Consensus 73 g~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 149 (471)
|-++++. ...+...+.|. +|.....+. ........+...+ +|.+++... ..++.+|+. ++......+...
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~-~~~~~~~~~~~l~--nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~ 187 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDN-NGDVRWYLP-LDSGSDNSFKQLP--NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGG 187 (477)
T ss_dssp -EEEEEETT--BEEEEEEEET-TS-EEEEE--GGGT--SSEEE-T--TS-EEEEEB--TEEEEE-TT---EEEEEE--TT
T ss_pred cEEEEeCCCCCCCceEEEECC-CccEEEEEc-cCccccceeeEcC--CCCEEEecC--CceEEEcCC-CCEEEeeecCCc
Confidence 3355555 23456677774 366544442 1111111155666 888877655 678888874 333332223321
Q ss_pred e-eeEEEEEEccCCCcEEEEEec-------------CCeEEEEeccCCccceeeeecccCCc-----------------C
Q 012064 150 Q-GRAHKLAIEPGSPHVFYTCGE-------------DGLVQHFDLRTGAATELFTCRPIDDR-----------------R 198 (471)
Q Consensus 150 ~-~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~ 198 (471)
. .-=..+...|+| ++|+.+.. +-.|..+| ++|+.+........... .
T Consensus 188 ~~~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 188 YYDFHHDIDELPNG-NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp EE-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred ccccccccEECCCC-CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 1 111346677888 45555551 22466667 77777766554433210 0
Q ss_pred cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
....-..++++.+.|.++.+++++-.-..|...|.+++++.
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 11122348899999965677777776778989997777654
No 476
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.19 E-value=3.1 Score=38.07 Aligned_cols=165 Identities=14% Similarity=0.141 Sum_probs=92.5
Q ss_pred EeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceE-EEeecCCCc----cee-EEEEecCCCCeEEEEEeCCCe
Q 012064 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFHSGHND----NVF-QAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 56 ~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~----~v~-~~~~~~~~~~~~l~s~~~dg~ 129 (471)
.+..-...|..+-..|||+.|..-+. ..+.++++.+.... +++.....+ .|+ .+.... .+..+..++.||-
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~~dG~ 291 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVHEDGL 291 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEcCCCc
Confidence 34444567778889999998876555 57889988764431 122111111 222 222233 6778889999999
Q ss_pred EEEEe-ccccCccee---eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 130 VRHAQ-ILERGGVET---KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 130 i~iwd-~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
|.-|- .+....... +.++-...++..+.-. +..+-+++-+..|++.++.-...+..-.-. ....
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-----------~~~~ 359 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFER-----------AYQA 359 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhh-----------hhcC
Confidence 98884 333322111 1111111222222211 223457777888888887654443322111 1114
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
..-++++|. +.++++ -..|.++++.+++..
T Consensus 360 ~~~~~~Sp~-~~~Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 360 PQLVAMSPN-QAYLLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred cceeeeCcc-cchhee-ecCCceEEEEecCCC
Confidence 567889998 566664 456789999988764
No 477
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.19 E-value=9.3 Score=28.75 Aligned_cols=112 Identities=8% Similarity=0.051 Sum_probs=68.0
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCc--------eEEEeecCCCcceeEEEEecC---CCCeEEEEEeCCCeEEEEec
Q 012064 67 VSFNTDGDILISGSDDRRVILWDWKTER--------VKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQI 135 (471)
Q Consensus 67 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~ 135 (471)
-.|......|+.++.-|+|.|.+..... .+..+ .-...|++++-.|. .+...|+.|+ ...+..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 4565556678888888999999865332 22222 34556777765543 2345666666 458999999
Q ss_pred cccCcceeeEeeceeeeEEEEEEc---cCCCcEEEEEecCCeEEEEeccCCcc
Q 012064 136 LERGGVETKLLGKHQGRAHKLAIE---PGSPHVFYTCGEDGLVQHFDLRTGAA 185 (471)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~ 185 (471)
..+..+.. +.-.+.+.++.+- .....+ +..+-+-.|.-||.+..+.
T Consensus 81 ~~N~d~Fy---ke~~DGvn~i~~g~~~~~~~~l-~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 81 ENNSDLFY---KEVPDGVNAIVIGKLGDIPSPL-VIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred ccCchhhh---hhCccceeEEEEEecCCCCCcE-EEECceEEEEEeCCCCcEE
Confidence 88877653 3334566666652 212234 4444456777777665543
No 478
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.93 E-value=19 Score=32.06 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=40.8
Q ss_pred CCCEEEEecCCCeEEEEECCCC-ceEEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccc
Q 012064 72 DGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILE 137 (471)
Q Consensus 72 ~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 137 (471)
++++|+.|..+| +.+-++... .....+ .+...|.++...+ ..+.|++-++ ...++.+++..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLE--ENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEh--hhCEEEEEeCCcceEEEEEHHH
Confidence 346899999999 445555542 222333 4677899999998 7776666553 34599999854
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.76 E-value=12 Score=39.38 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=40.3
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+.+..+++++.. ..+...+.+-+|+.........+. +....+++++..++++-.||.+..||...+..
T Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKI--LIGFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCc--ceeeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 444444344433 223345666666654433322222 22222288899999999999999999998755
No 480
>PLN02193 nitrile-specifier protein
Probab=87.65 E-value=27 Score=33.50 Aligned_cols=109 Identities=10% Similarity=0.058 Sum_probs=55.0
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceEEEeec----CCCcceeEEEEecCCCCeEEEEEeCC----CeEEEEecccc
Q 012064 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHS----GHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER 138 (471)
Q Consensus 72 ~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~ 138 (471)
++++.+.|+.++ .+..||+.+.+-...-.. ..... ..+.. - +++.++.++.+ ..+.++|+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~--~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-V--QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-E--CCcEEEEECCCCCccCceEEEECCCC
Confidence 456677776543 467788776543111000 01111 12222 2 56677776654 45888998877
Q ss_pred CcceeeEeec--eeeeEEEEEEccCCCcEEEEEecC--------------CeEEEEeccCCccc
Q 012064 139 GGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGED--------------GLVQHFDLRTGAAT 186 (471)
Q Consensus 139 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~ 186 (471)
+......... ......+.+ .-++ ++++.|+.. ..+.++|+.+.+..
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASA-AVGK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEEEeccCCCCCCCcceeEEE-EECC-EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 6543211100 011111222 2234 677888753 24788888877654
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.63 E-value=22 Score=33.53 Aligned_cols=54 Identities=7% Similarity=0.193 Sum_probs=36.9
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--EEEe---ec-CCCcceeEEEEec
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSF---HS-GHNDNVFQAKIMP 114 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~---~~-~~~~~v~~~~~~~ 114 (471)
-..-+.|+|.|||++|++--..|.|++++-.++.. +..+ .. .-.+....++++|
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 34568999999998887765469999998655432 1111 11 1356788999998
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.42 E-value=22 Score=32.15 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=64.6
Q ss_pred eeEEEEEEccCCCcEEEEEecCCe------EEEEeccCC----ccceeeeecccCCcCc---ceeeeeeEEEEEcCCCCc
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGL------VQHFDLRTG----AATELFTCRPIDDRRN---YMTVVNLNAIAIDPRNAN 217 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~----~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~ 217 (471)
+.+.++.+.+++. .+++.+.+|. +..+++... ..+............+ ........++++.++ +.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~-g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD-GS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-CC
Confidence 4567888886553 4677777777 666665541 1111111111111100 001124567888555 66
Q ss_pred eEEEEeCC------CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe
Q 012064 218 LFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 218 ~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
++++.-.+ ..|+.++.. ++.......................+....+++++|+|+.|.+.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 77666566 678888866 44433322211100000000222346778999999999965544
No 483
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.41 E-value=3.4 Score=23.16 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=20.4
Q ss_pred ecCCCcceEEEEEcCCCCEEEEee-cC--CcEEEe
Q 012064 381 IEADRHVVNCIEPHPHSTVLASSG-IE--SDIKIL 412 (471)
Q Consensus 381 ~~~h~~~v~~~~~s~~~~~l~s~~-~d--g~i~iw 412 (471)
+....+.-....|||||+.|+-++ .+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455678899999999776554 34 555555
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.20 E-value=11 Score=32.03 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=70.1
Q ss_pred EEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---CeEEEEecccc----CcceeeEeeceeeeEEEEE
Q 012064 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILER----GGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~ 157 (471)
-.+||+.+++. +.+.....--..+-.+.| ||+.+.+|+.. ..+++++.... ........-.....--...
T Consensus 48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~--dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLP--DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcE-EeccCCCCCcccCcCCCC--CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 45899988775 233122222223335777 99999988752 35788876441 1111000001112223345
Q ss_pred EccCCCcEEEEEecCC-eEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 158 IEPGSPHVFYTCGEDG-LVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
..||| ++++.|+.+. ....|.-+.. .....+...... .......-..-+...|+ |++|+.+..+. .+||..+
T Consensus 125 ~L~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~--~~~~~~nlYP~~~llPd-G~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 125 TLPDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQT--SDTLPNNLYPFVHLLPD-GNLFIFANRGS--IIYDYKT 198 (243)
T ss_pred ECCCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhh--hccCccccCceEEEcCC-CCEEEEEcCCc--EEEeCCC
Confidence 56788 4677776664 3444443221 111111111000 00001112335566788 68888777654 4667776
Q ss_pred Ccc
Q 012064 236 YKW 238 (471)
Q Consensus 236 ~~~ 238 (471)
.+.
T Consensus 199 n~v 201 (243)
T PF07250_consen 199 NTV 201 (243)
T ss_pred CeE
Confidence 643
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=27 Score=36.96 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=26.1
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~ 91 (471)
.....++|+|...++|.+...|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 456678999999999999999999999754
No 486
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.82 E-value=0.32 Score=47.94 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=47.1
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEE-----------EcCCCCEEEEeecCCcEEEecCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE-----------PHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~-----------~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
-++.-++.++-.++.|++.+...... ..+.+|...+..++ .||||..+|.++.||.+++|.+.
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 55667888888889998877654332 44556776665544 58999999999999998888764
No 487
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.46 E-value=17 Score=29.99 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=63.9
Q ss_pred EEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC------eEEEE-EcCCC--
Q 012064 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE------YTRLY-DIRKY-- 236 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~i~i~-d~~~~-- 236 (471)
++.+.....|.+|++.+.......... .-+.|..+.++.. |.++++--++. .+|+| +-+..
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~-GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEA-GDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccc-cceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 444466778999999844433332222 3357889999998 68888754322 55665 22221
Q ss_pred --ccCC----CCCCCCCCCcC-C--CCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCC
Q 012064 237 --KWDG----STDFGQPADYF-C--PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 237 --~~~~----~~~~~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
+... ......+.... . ..-+.-.-..++.+++..|-.--|+.++++.+.+|.+...
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 1000 00000000000 0 0001111245677888888766778888899999987653
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.15 E-value=27 Score=31.99 Aligned_cols=197 Identities=15% Similarity=0.188 Sum_probs=103.1
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEc----CCCCE--EEEec
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----TDGDI--LISGS 80 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s----~~g~~--l~s~~ 80 (471)
+|...+++....++-+.+||++ |+.++ .+. .+.++.+..- -.|+. ||.++
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq---------------------~~~--~Gr~NNVDvrygf~l~g~~vDlavas 120 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-GKELQ---------------------SLP--VGRPNNVDVRYGFPLNGKTVDLAVAS 120 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-S-EEE---------------------EE---SS-EEEEEEEEEEEETTEEEEEEEEE
T ss_pred CcccceEEEEeCCCCEEEEcCC-CcEEE---------------------eec--CCCcceeeeecceecCCceEEEEEEe
Confidence 3556778888888999999999 77663 221 1222222221 12322 34443
Q ss_pred C-C---CeEEEEECC--CCceEEEeec------CCCcceeEEEEecC-CCCe-EEEEEeCCCeEEEEecccc-Cc-ce--
Q 012064 81 D-D---RRVILWDWK--TERVKLSFHS------GHNDNVFQAKIMPF-TDDR-SIVTCAADGQVRHAQILER-GG-VE-- 142 (471)
Q Consensus 81 ~-d---~~i~iwd~~--~~~~~~~~~~------~~~~~v~~~~~~~~-~~~~-~l~s~~~dg~i~iwd~~~~-~~-~~-- 142 (471)
. + .+|++|.+. ++. +..+.. .....++.+|.-.. .++. +.+....+|.+..|.+... .. +.
T Consensus 121 ~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~ 199 (381)
T PF02333_consen 121 DRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSAT 199 (381)
T ss_dssp E-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEE
T ss_pred cCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeE
Confidence 2 2 479999775 333 333311 11234667776421 1343 5667788999999988643 22 11
Q ss_pred -eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc--eeeeecccCCcCcceeeeeeEEEEEc--CCC-C
Q 012064 143 -TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAID--PRN-A 216 (471)
Q Consensus 143 -~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~-~ 216 (471)
.+.+. -...+..+...... ..|+.+-++.-|.-|+.+..... ..+...... . ....+..++.- +++ +
T Consensus 200 lVR~f~-~~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~---~--l~aDvEGlaly~~~~g~g 272 (381)
T PF02333_consen 200 LVREFK-VGSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD---G--LVADVEGLALYYGSDGKG 272 (381)
T ss_dssp EEEEEE--SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS---S--B-S-EEEEEEEE-CCC-E
T ss_pred EEEEec-CCCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeeccccc---c--cccCccceEEEecCCCCe
Confidence 11122 23467788888766 46788999988888887633221 222111111 0 22356666653 332 3
Q ss_pred ceEEEEeCCCeEEEEEcCC
Q 012064 217 NLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~ 235 (471)
.+|++.-.+++..+|+.+.
T Consensus 273 YLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 273 YLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEEGGGTEEEEEESST
T ss_pred EEEEEcCCCCeEEEEecCC
Confidence 4555655777899999874
No 489
>PLN02193 nitrile-specifier protein
Probab=85.93 E-value=34 Score=32.87 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=74.6
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceEEEeec---CCCcceeEEEEecCCCCeEEEEEeCCC-----eEEEEecccc
Q 012064 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHS---GHNDNVFQAKIMPFTDDRSIVTCAADG-----QVRHAQILER 138 (471)
Q Consensus 72 ~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 138 (471)
++++.+.|+.+ ..+..||+.+.+-...-.. .....-.++.. - +++.++.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~--~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-D--EENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-E--CCEEEEECCCCCCCCcceEEEEECCCC
Confidence 45666777654 3578888876543211100 01111112222 2 667777776543 4667777665
Q ss_pred CcceeeEe---eceeeeEEEEEEccCCCcEEEEEecC----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 139 GGVETKLL---GKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 139 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+....... ...... ..++. -++ ++++.++.+ ..+.+||+.+.+..........+. ......++.+
T Consensus 305 ~W~~~~~~~~~~~~R~~-~~~~~-~~g-kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~-----~R~~~~~~~~ 376 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGG-AGLEV-VQG-KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS-----ERSVFASAAV 376 (470)
T ss_pred EEEeCCCCCCCCCCCCC-cEEEE-ECC-cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC-----CcceeEEEEE
Confidence 54321100 000111 11222 244 466666655 458899998876543321111110 0011122222
Q ss_pred cCCCCceEEEEeCC--------------CeEEEEEcCCCccC
Q 012064 212 DPRNANLFAVAGSD--------------EYTRLYDIRKYKWD 239 (471)
Q Consensus 212 ~p~~~~~l~~~~~d--------------g~i~i~d~~~~~~~ 239 (471)
++++++.|+.. ..+.+||+.+.++.
T Consensus 377 ---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 377 ---GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ---CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 24677777753 24788999887754
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=18 Score=29.65 Aligned_cols=191 Identities=17% Similarity=0.089 Sum_probs=90.4
Q ss_pred CCCEEEEecCC--CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece
Q 012064 72 DGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149 (471)
Q Consensus 72 ~g~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 149 (471)
+|.++.+.+.- ..|++||+.+|+.+....-. ...+..=-.... .+....-.-.+|.-..+|..+-+......+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~-gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKL-GDYFYQLTWKEGVAFKYDADTLEELGRFSYE-- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-Cccccccceeec-cceEEEEEeccceeEEEChHHhhhhcccccC--
Confidence 56667766653 47999999999887665222 112211111110 1112222334677778888777665543333
Q ss_pred eeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEE
Q 012064 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (471)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (471)
+.-+.+ ..++.+ ++.+....+++.-|.++-............. ....++-+.|-. |.+.|-.-....|.
T Consensus 131 -GeGWgL--t~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~-----pv~~LNELE~Vd--G~lyANVw~t~~I~ 199 (262)
T COG3823 131 -GEGWGL--TSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGV-----PVSKLNELEWVD--GELYANVWQTTRIA 199 (262)
T ss_pred -Ccceee--ecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCe-----ecccccceeeec--cEEEEeeeeecceE
Confidence 223333 335544 4555555577777777655444333211000 111223333332 33333333333344
Q ss_pred EEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEee
Q 012064 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN 280 (471)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~ 280 (471)
..|..+++...-......... ......+..-.+.+++.|++ +++++|-
T Consensus 200 rI~p~sGrV~~widlS~L~~~---~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 200 RIDPDSGRVVAWIDLSGLLKE---LNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEcCCCCcEEEEEEccCCchh---cCccccccccccceeecCcCCeEEEecC
Confidence 444444443332222211111 11222334567889999987 4555553
No 491
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.51 E-value=25 Score=31.02 Aligned_cols=145 Identities=15% Similarity=0.223 Sum_probs=75.9
Q ss_pred eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCC-----CE-EEEecCCCeEEEEECCCCc
Q 012064 21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-----DI-LISGSDDRRVILWDWKTER 94 (471)
Q Consensus 21 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g-----~~-l~s~~~d~~i~iwd~~~~~ 94 (471)
+|-+||+.++++++ ++.+-...-...+.+..+.+.... .+ .++-+..+-|.|+|+.+++
T Consensus 35 KLv~~Dl~t~~li~---------------~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~ 99 (287)
T PF03022_consen 35 KLVAFDLKTNQLIR---------------RYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGK 99 (287)
T ss_dssp EEEEEETTTTCEEE---------------EEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTE
T ss_pred EEEEEECCCCcEEE---------------EEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCc
Confidence 67778888877664 222222222235667778776522 22 2334445679999999887
Q ss_pred eEEEeecCC-------------------CcceeEEEEecC-CCCeEEEEEeCCCeEEEEeccccC-----c---c----e
Q 012064 95 VKLSFHSGH-------------------NDNVFQAKIMPF-TDDRSIVTCAADGQVRHAQILERG-----G---V----E 142 (471)
Q Consensus 95 ~~~~~~~~~-------------------~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~-----~---~----~ 142 (471)
.-+.. ..+ ...+..++.+|. .+++.|+-..-.+ -++|.+.+.. . . .
T Consensus 100 s~Rv~-~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~ 177 (287)
T PF03022_consen 100 SWRVL-HNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQ 177 (287)
T ss_dssp EEEEE-TCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT
T ss_pred EEEEe-cCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCcccccccccccc
Confidence 63332 211 122445555441 1445555544332 1334332210 0 0 0
Q ss_pred eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC
Q 012064 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (471)
...+.........++++++| .++++--..+.|..|+..+.
T Consensus 178 v~~lG~k~~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 178 VQDLGDKGSQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp -EEEEE---SECEEEEETTT-EEEEEECCCTEEEEEETTTS
T ss_pred ceeccccCCCCceEEECCCC-cEEEecCCCCeEEEEeCCCC
Confidence 01121112355678888988 68888888899999998863
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.37 E-value=4.6 Score=39.64 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCeEEEEEeCCCeEEEEeccc---cCc-ceeeEeec--------------------eeeeEEEEEEcc---CCCcEEEEE
Q 012064 117 DDRSIVTCAADGQVRHAQILE---RGG-VETKLLGK--------------------HQGRAHKLAIEP---GSPHVFYTC 169 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~---~~~-~~~~~~~~--------------------~~~~v~~~~~~~---~~~~~l~~~ 169 (471)
+...++.+..||.+....... ... .....+.. .......+++++ ++..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556777777888887777654 111 11110110 123345555555 233688999
Q ss_pred ecCCeEEEEeccCCccceeeee
Q 012064 170 GEDGLVQHFDLRTGAATELFTC 191 (471)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~ 191 (471)
+.|+.+|+||+++++++.....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999998665543
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.16 E-value=3.8 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=21.4
Q ss_pred eeeeEEEEEEccCCCcEEEEEecC--CeEEEE
Q 012064 149 HQGRAHKLAIEPGSPHVFYTCGED--GLVQHF 178 (471)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw 178 (471)
....-....|+|||+.+++++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999998888887777 666665
No 494
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.89 E-value=29 Score=31.25 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=36.1
Q ss_pred CCCEEEEecC-----CCeEEEEECCCCceEEEeec-CCCcceeEEEEecCCCCeEEEEEeCCC----eEEEEeccccCcc
Q 012064 72 DGDILISGSD-----DRRVILWDWKTERVKLSFHS-GHNDNVFQAKIMPFTDDRSIVTCAADG----QVRHAQILERGGV 141 (471)
Q Consensus 72 ~g~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~ 141 (471)
++++.+.|+. ...+..||..+.+-. .+.. .........+... +++..+.|+.++ .+..||+.+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWF-ELPDFPGEPRVQPVCVKL--QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCee-ECCCCCCCCCCcceEEEE--CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 5666666664 236888888765431 1111 1111112222233 677888887654 3457888776654
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.27 E-value=9.9 Score=30.51 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=25.7
Q ss_pred ccEEEEEEcCCC------CEEEEecCCCeEEEEECCC
Q 012064 62 GCVNTVSFNTDG------DILISGSDDRRVILWDWKT 92 (471)
Q Consensus 62 ~~V~~~~~s~~g------~~l~s~~~d~~i~iwd~~~ 92 (471)
..|..++|||.| .+||+-..++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 4788889999999998653
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.92 E-value=39 Score=31.96 Aligned_cols=56 Identities=7% Similarity=0.159 Sum_probs=37.5
Q ss_pred CCcEEEEeeCCCeEEEEEccCCe--e----eEEecCCCcceEEEEEcCCC-CEEEEeecCCcEE
Q 012064 354 KCEYVVSGSDCGRIFIWKKKGGE--L----IRVIEADRHVVNCIEPHPHS-TVLASSGIESDIK 410 (471)
Q Consensus 354 ~g~~l~~g~~dg~v~iwd~~~~~--~----~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~ 410 (471)
+|.+|+.+=..+.|+...+.... . ...+.. .++|..+...||| .+.+..+..|.+.
T Consensus 368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~ 430 (454)
T TIGR03606 368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQ 430 (454)
T ss_pred CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCccc
Confidence 36777777777788888875441 2 222333 5799999999997 6566666666543
No 497
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.81 E-value=27 Score=30.04 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=89.7
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEee---cCCCcceeEEEEecCCCCeEEEEEeCC---------Ce
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAAD---------GQ 129 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~ 129 (471)
..-..+..-|||..-++-+.. -|.-.|-++.+. .++. ..-........|.+ .|+.-+++... +.
T Consensus 104 a~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~--~G~lWFt~q~G~yGrLdPa~~~ 179 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPLPLEHADANLETAVFDP--WGNLWFTGQIGAYGRLDPARNV 179 (353)
T ss_pred CCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeecccccCCCcccceeeCC--CccEEEeeccccceecCcccCc
Confidence 344556677888766655444 455566655554 2221 22344677888998 88888887531 34
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
|++|+...+ ..-+.++..|+| .+.++.-.+..|-..|..++... .+..... .......+
T Consensus 180 i~vfpaPqG------------~gpyGi~atpdG-svwyaslagnaiaridp~~~~ae-v~p~P~~-------~~~gsRri 238 (353)
T COG4257 180 ISVFPAPQG------------GGPYGICATPDG-SVWYASLAGNAIARIDPFAGHAE-VVPQPNA-------LKAGSRRI 238 (353)
T ss_pred eeeeccCCC------------CCCcceEECCCC-cEEEEeccccceEEcccccCCcc-eecCCCc-------cccccccc
Confidence 555543221 234678899999 46777777788888888777332 2221111 01123445
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
--+|. +..-++....+.+..||.....
T Consensus 239 wsdpi-g~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 239 WSDPI-GRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred ccCcc-CcEEEeccCCceeeEeCccccc
Confidence 55676 5666666677788888876654
No 498
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=83.71 E-value=64 Score=34.20 Aligned_cols=145 Identities=8% Similarity=0.071 Sum_probs=78.8
Q ss_pred CEEEEecC---------CCeEEEEECCC-----Cce-----EEE-eecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 74 DILISGSD---------DRRVILWDWKT-----ERV-----KLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 74 ~~l~s~~~---------d~~i~iwd~~~-----~~~-----~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
.+||.|.. .|.+.|+|+-. |++ ++. +....++.|..++=. +|. |+++. ...|.+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~-l~~~~-GqKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGH-LLSSQ-GQKIIVR 1121 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccE-EEEcc-CcEEEEE
Confidence 47777642 47899999743 221 222 234567788777654 454 44443 3479999
Q ss_pred eccc-cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 134 QILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 134 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
+++. .+.+... +.. -++.-....--. ++++.|.--..|.+.-....-..-.+-.... ..-.+.++.|-
T Consensus 1122 ~l~r~~~ligVa-FiD--~~~yv~s~~~vk-nlIl~gDV~ksisfl~fqeep~rlsL~srd~-------~~l~v~s~EFL 1190 (1366)
T KOG1896|consen 1122 KLDRDSELIGVA-FID--LPLYVHSMKVVK-NLILAGDVMKSISFLGFQEEPYRLSLLSRDF-------EPLNVYSTEFL 1190 (1366)
T ss_pred EeccCCcceeeE-Eec--cceeEEehhhhh-hheehhhhhhceEEEEEccCceEEEEeecCC-------chhhceeeeeE
Confidence 9944 4433322 211 122222222223 4566676666676665543322111111111 22356777777
Q ss_pred CCCCc-eEEEEeCCCeEEEEEcC
Q 012064 213 PRNAN-LFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 213 p~~~~-~l~~~~~dg~i~i~d~~ 234 (471)
-+|++ .++++..++.|++|-..
T Consensus 1191 Vdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1191 VDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EcCCeeEEEEEcCCCcEEEEEeC
Confidence 66544 57888899999888654
No 499
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.46 E-value=27 Score=29.76 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=24.3
Q ss_pred eeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCC
Q 012064 350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (471)
Q Consensus 350 ~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h 384 (471)
|.-|+|++++.+..++ .|||..+.+.++.+..-
T Consensus 176 ~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 176 HLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 3489999999988654 46688888776766543
No 500
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.41 E-value=37 Score=31.30 Aligned_cols=198 Identities=11% Similarity=0.002 Sum_probs=95.4
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~ 90 (471)
..+.++..||.|.-.|.+++..+-.. .+.+....+.+-.+..+|+ ++.++.++.+..+|.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~-------------------~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~ 128 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSY-------------------PLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDA 128 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecc-------------------cCcCcceeccCceEEeCCe-EEEecccceEEEEEC
Confidence 34555577888888888877744100 0000112222222333676 666788888999998
Q ss_pred CCCceEEEeecCCCc-ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec-eeeeEEEEEEccCCCcEEEE
Q 012064 91 KTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQGRAHKLAIEPGSPHVFYT 168 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~ 168 (471)
.+|+.+.... .... .+...... .+..+..++.++.+...+..++...-...... -...+..-....++ .++.
T Consensus 129 ~~G~~~W~~~-~~~~~~~~~~~v~---~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~vy~ 202 (370)
T COG1520 129 STGTLVWSRN-VGGSPYYASPPVV---GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG--TVYV 202 (370)
T ss_pred CCCcEEEEEe-cCCCeEEecCcEE---cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc--eEEE
Confidence 8899887773 2221 11111111 22333333356777666666555432211110 01111111112233 3455
Q ss_pred Eec--CCeEEEEeccCCccceeeeecccCCcCcc--eeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 169 CGE--DGLVQHFDLRTGAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 169 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
+.. ++.+.-.|.+++......+.......... ........+-. + + -+..++.++.+...|..+++.
T Consensus 203 ~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v--~-~-~~~~~~~~g~~~~l~~~~G~~ 272 (370)
T COG1520 203 GSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV--D-G-GVYAGSYGGKLLCLDADTGEL 272 (370)
T ss_pred ecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEE--C-C-cEEEEecCCeEEEEEcCCCce
Confidence 555 66788888888887766433222111100 00000111111 1 1 235566777788888877653
Done!