Query 012064
Match_columns 471
No_of_seqs 645 out of 2375
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 20:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.9E-51 9.9E-56 400.8 35.5 398 2-434 63-589 (611)
2 1nr0_A Actin interacting prote 100.0 5.9E-50 2E-54 391.5 37.7 335 3-415 152-610 (611)
3 1vyh_C Platelet-activating fac 100.0 7.2E-49 2.5E-53 365.0 36.4 290 53-415 100-410 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 7.2E-48 2.5E-52 349.5 40.4 294 50-413 44-340 (340)
5 3ow8_A WD repeat-containing pr 100.0 4.9E-48 1.7E-52 347.0 37.1 292 52-415 23-320 (321)
6 2ynn_A Coatomer subunit beta'; 100.0 1.4E-47 4.7E-52 342.0 38.7 294 51-416 3-302 (304)
7 3iz6_a 40S ribosomal protein R 100.0 8.3E-49 2.8E-53 361.2 30.7 312 51-418 56-377 (380)
8 2pbi_B Guanine nucleotide-bind 100.0 5.9E-47 2E-51 345.0 40.4 294 52-413 55-354 (354)
9 2ymu_A WD-40 repeat protein; u 100.0 3.9E-47 1.3E-51 370.8 40.6 310 3-413 267-577 (577)
10 4g56_B MGC81050 protein; prote 100.0 1.2E-47 4.2E-52 349.7 34.1 292 57-417 38-344 (357)
11 2ymu_A WD-40 repeat protein; u 100.0 4.1E-47 1.4E-51 370.6 39.1 332 3-435 226-558 (577)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.1E-47 2.8E-51 343.2 38.2 320 51-420 5-339 (345)
13 4ery_A WD repeat-containing pr 100.0 3.4E-46 1.2E-50 334.9 39.3 297 50-415 12-311 (312)
14 2pm9_A Protein WEB1, protein t 100.0 1.8E-47 6.3E-52 357.7 30.3 335 2-417 16-415 (416)
15 4gqb_B Methylosome protein 50; 100.0 4.5E-47 1.5E-51 343.1 31.7 296 2-419 34-334 (344)
16 1vyh_C Platelet-activating fac 100.0 1.4E-46 4.8E-51 349.6 33.4 277 3-372 113-409 (410)
17 1r5m_A SIR4-interacting protei 100.0 1.2E-45 4.1E-50 346.3 37.4 327 2-415 49-424 (425)
18 3frx_A Guanine nucleotide-bind 100.0 3.8E-45 1.3E-49 328.4 37.9 293 50-417 6-318 (319)
19 1erj_A Transcriptional repress 100.0 3.5E-45 1.2E-49 338.6 38.6 309 53-417 57-390 (393)
20 3ow8_A WD repeat-containing pr 100.0 2.5E-45 8.7E-50 329.3 34.0 278 3-372 37-319 (321)
21 2xzm_R RACK1; ribosome, transl 100.0 1.3E-44 4.4E-49 328.6 37.0 296 50-417 10-341 (343)
22 1got_B GT-beta; complex (GTP-b 100.0 9.8E-45 3.4E-49 328.9 35.0 277 3-371 60-340 (340)
23 1gxr_A ESG1, transducin-like e 100.0 7.6E-45 2.6E-49 329.9 34.1 318 2-414 13-335 (337)
24 3frx_A Guanine nucleotide-bind 100.0 1.1E-44 3.7E-49 325.4 32.2 291 3-375 22-318 (319)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-44 1.1E-48 326.1 35.1 316 3-381 21-342 (345)
26 3vl1_A 26S proteasome regulato 100.0 2.5E-44 8.4E-49 336.9 35.2 331 3-416 61-419 (420)
27 4g56_B MGC81050 protein; prote 100.0 5.6E-45 1.9E-49 332.2 29.0 287 2-375 46-344 (357)
28 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-44 9.6E-49 363.5 36.8 399 2-435 21-631 (902)
29 2hes_X YDR267CP; beta-propelle 100.0 1.1E-43 3.7E-48 320.5 36.6 306 51-416 4-328 (330)
30 2ynn_A Coatomer subunit beta'; 100.0 6.8E-44 2.3E-48 318.1 34.5 282 2-374 17-302 (304)
31 1pgu_A Actin interacting prote 100.0 8.2E-44 2.8E-48 350.0 37.7 376 2-435 22-593 (615)
32 4aow_A Guanine nucleotide-bind 100.0 9E-43 3.1E-47 316.7 39.3 297 50-418 27-339 (340)
33 2xzm_R RACK1; ribosome, transl 100.0 3.2E-43 1.1E-47 319.5 35.1 295 8-376 37-342 (343)
34 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-43 4.7E-48 375.3 37.8 384 3-434 620-1052(1249)
35 2pbi_B Guanine nucleotide-bind 100.0 2E-43 7E-48 321.7 33.5 279 2-371 68-354 (354)
36 1pgu_A Actin interacting prote 100.0 2.6E-42 8.9E-47 339.4 39.6 351 3-416 69-614 (615)
37 3sfz_A APAF-1, apoptotic pepti 100.0 2.6E-43 8.8E-48 373.1 33.8 356 3-421 662-1163(1249)
38 3iz6_a 40S ribosomal protein R 100.0 7.3E-44 2.5E-48 328.2 25.5 296 2-376 70-377 (380)
39 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-43 7.4E-48 334.4 28.4 322 7-417 170-518 (524)
40 1sq9_A Antiviral protein SKI8; 100.0 4.9E-42 1.7E-46 318.8 36.4 299 51-418 6-397 (397)
41 2oaj_A Protein SNI1; WD40 repe 100.0 6.1E-43 2.1E-47 353.8 32.4 384 3-419 63-667 (902)
42 3zwl_B Eukaryotic translation 100.0 3.1E-41 1.1E-45 310.1 39.5 303 52-419 23-349 (369)
43 4ery_A WD repeat-containing pr 100.0 1.1E-41 3.8E-46 305.5 35.0 279 2-373 27-311 (312)
44 1erj_A Transcriptional repress 100.0 9.8E-42 3.3E-46 315.5 34.8 315 2-375 68-390 (393)
45 3i2n_A WD repeat-containing pr 100.0 1.2E-41 4.1E-46 311.5 34.2 300 55-418 12-355 (357)
46 4e54_B DNA damage-binding prot 100.0 3.6E-42 1.2E-46 323.0 29.9 319 52-420 110-434 (435)
47 3ei3_B DNA damage-binding prot 100.0 4.3E-41 1.5E-45 310.8 36.6 315 50-416 62-382 (383)
48 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6E-41 2.1E-45 316.0 38.0 306 6-417 125-443 (445)
49 3dm0_A Maltose-binding peripla 100.0 3.5E-41 1.2E-45 335.0 37.8 294 52-415 373-692 (694)
50 4aow_A Guanine nucleotide-bind 100.0 2.5E-41 8.5E-46 307.2 32.6 296 2-376 42-339 (340)
51 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-40 3.6E-45 299.4 35.9 294 50-421 7-301 (313)
52 4gqb_B Methylosome protein 50; 100.0 2E-41 6.9E-46 306.1 30.3 243 3-292 87-332 (344)
53 2hes_X YDR267CP; beta-propelle 100.0 3.4E-41 1.2E-45 304.2 31.6 290 4-374 20-328 (330)
54 1k8k_C P40, ARP2/3 complex 41 100.0 3.4E-41 1.2E-45 310.3 31.9 309 57-418 4-363 (372)
55 3v7d_B Cell division control p 100.0 2E-40 6.7E-45 314.5 37.6 309 7-413 129-460 (464)
56 3gre_A Serine/threonine-protei 100.0 4.8E-42 1.6E-46 323.0 26.0 334 4-413 33-437 (437)
57 4a11_B DNA excision repair pro 100.0 7.8E-41 2.7E-45 311.8 33.9 332 19-421 22-370 (408)
58 1r5m_A SIR4-interacting protei 100.0 1E-40 3.5E-45 312.7 32.5 296 58-418 42-363 (425)
59 4gga_A P55CDC, cell division c 100.0 1.1E-39 3.7E-44 304.8 38.8 284 4-419 111-398 (420)
60 3k26_A Polycomb protein EED; W 100.0 1.1E-40 3.7E-45 306.1 30.6 318 56-415 13-365 (366)
61 2pm9_A Protein WEB1, protein t 100.0 2E-41 6.9E-46 316.7 26.0 301 60-420 11-341 (416)
62 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-40 9.4E-45 335.5 36.4 321 2-416 17-386 (814)
63 3dm0_A Maltose-binding peripla 100.0 2.3E-40 8E-45 329.1 35.0 303 3-373 387-692 (694)
64 3dwl_C Actin-related protein 2 100.0 1.2E-41 4E-46 314.0 23.3 249 1-291 14-281 (377)
65 4ggc_A P55CDC, cell division c 100.0 7.2E-39 2.5E-43 288.1 38.1 283 4-418 31-317 (318)
66 1k8k_C P40, ARP2/3 complex 41 100.0 5.6E-40 1.9E-44 302.2 31.4 320 1-377 11-364 (372)
67 2pm7_B Protein transport prote 100.0 2.2E-39 7.7E-44 287.8 33.5 270 55-416 3-285 (297)
68 1gxr_A ESG1, transducin-like e 100.0 5.9E-39 2E-43 291.1 36.8 276 2-372 55-335 (337)
69 4h5i_A Guanine nucleotide-exch 100.0 2.6E-40 8.9E-45 302.1 27.1 290 61-417 14-344 (365)
70 3zwl_B Eukaryotic translation 100.0 3.2E-39 1.1E-43 296.7 33.9 284 2-379 36-351 (369)
71 3mkq_A Coatomer beta'-subunit; 100.0 4.6E-39 1.6E-43 326.5 37.4 298 51-419 3-305 (814)
72 3dw8_B Serine/threonine-protei 100.0 1.4E-38 4.9E-43 300.3 37.4 297 59-415 26-445 (447)
73 4e54_B DNA damage-binding prot 100.0 3.9E-40 1.3E-44 309.1 25.4 302 2-378 123-434 (435)
74 4a11_B DNA excision repair pro 100.0 1.3E-38 4.3E-43 296.9 35.0 349 2-416 47-405 (408)
75 1yfq_A Cell cycle arrest prote 100.0 1.2E-38 4.1E-43 289.8 33.5 290 55-414 5-322 (342)
76 4aez_A CDC20, WD repeat-contai 100.0 1.1E-38 3.8E-43 296.1 33.8 280 10-382 103-388 (401)
77 1sq9_A Antiviral protein SKI8; 100.0 3.8E-39 1.3E-43 299.4 30.5 322 3-376 21-397 (397)
78 4aez_A CDC20, WD repeat-contai 100.0 1.1E-38 3.7E-43 296.2 33.5 288 57-421 87-385 (401)
79 3mmy_A MRNA export factor; mRN 100.0 1.1E-38 3.6E-43 293.1 33.0 298 50-416 28-346 (368)
80 3i2n_A WD repeat-containing pr 100.0 5.1E-39 1.7E-43 294.0 30.5 306 2-377 22-356 (357)
81 3ei3_B DNA damage-binding prot 100.0 9.3E-39 3.2E-43 295.1 32.5 294 3-374 78-382 (383)
82 3bg1_A Protein SEC13 homolog; 100.0 4.6E-39 1.6E-43 288.4 25.2 275 55-416 7-293 (316)
83 3v7d_B Cell division control p 100.0 1.2E-37 4.1E-42 295.4 35.1 308 53-434 113-441 (464)
84 3vl1_A 26S proteasome regulato 100.0 2.2E-38 7.6E-43 296.5 29.5 288 5-374 104-419 (420)
85 2pm7_B Protein transport prote 100.0 6E-38 2.1E-42 278.6 30.1 250 2-291 13-285 (297)
86 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-37 1.3E-41 280.6 31.8 309 55-419 5-340 (351)
87 3k26_A Polycomb protein EED; W 100.0 5.6E-38 1.9E-42 288.1 25.2 311 3-373 23-365 (366)
88 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-36 3.6E-41 286.0 32.9 281 57-421 129-419 (435)
89 3odt_A Protein DOA1; ubiquitin 100.0 6.8E-37 2.3E-41 274.6 30.2 277 3-381 23-303 (313)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-36 7.3E-41 285.0 34.1 283 52-420 109-395 (445)
91 3jrp_A Fusion protein of prote 100.0 7.7E-37 2.6E-41 281.9 30.1 261 54-417 4-288 (379)
92 4h5i_A Guanine nucleotide-exch 100.0 9.5E-38 3.2E-42 285.2 22.9 291 3-374 19-343 (365)
93 3dw8_B Serine/threonine-protei 100.0 1.5E-36 5.1E-41 286.5 30.7 331 2-372 32-444 (447)
94 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-37 1.1E-41 284.4 24.8 296 2-405 19-350 (588)
95 2j04_B YDR362CP, TAU91; beta p 100.0 2.8E-37 9.5E-42 292.7 24.9 290 3-373 212-516 (524)
96 3gre_A Serine/threonine-protei 100.0 4.1E-37 1.4E-41 289.3 25.7 333 2-371 67-437 (437)
97 1l0q_A Surface layer protein; 100.0 1.6E-34 5.3E-39 267.7 39.1 312 10-419 2-345 (391)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 2.8E-36 9.4E-41 280.3 27.3 288 4-377 40-345 (402)
99 3bg1_A Protein SEC13 homolog; 100.0 4.2E-37 1.5E-41 275.6 21.0 250 2-291 17-293 (316)
100 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-35 3.9E-40 278.9 30.5 293 6-394 139-433 (435)
101 3f3f_A Nucleoporin SEH1; struc 100.0 1.6E-35 5.4E-40 269.8 28.1 296 2-381 15-344 (351)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 4E-36 1.4E-40 279.2 23.7 291 63-419 36-345 (402)
103 3bws_A Protein LP49; two-domai 100.0 1.3E-34 4.4E-39 272.1 34.1 286 55-416 117-432 (433)
104 3vu4_A KMHSV2; beta-propeller 100.0 8.5E-35 2.9E-39 264.9 31.6 294 55-418 13-338 (355)
105 2xyi_A Probable histone-bindin 100.0 3.2E-34 1.1E-38 268.4 34.4 260 101-418 125-412 (430)
106 3dwl_C Actin-related protein 2 100.0 3.5E-36 1.2E-40 277.4 20.8 265 56-415 6-280 (377)
107 1yfq_A Cell cycle arrest prote 100.0 1.1E-34 3.9E-39 263.5 30.2 278 2-371 15-321 (342)
108 3jro_A Fusion protein of prote 100.0 3.4E-35 1.1E-39 293.4 27.2 260 55-419 3-288 (753)
109 3mmy_A MRNA export factor; mRN 100.0 9.7E-35 3.3E-39 266.7 27.9 280 2-372 43-344 (368)
110 3jrp_A Fusion protein of prote 100.0 1.4E-34 4.7E-39 266.8 28.1 252 2-292 15-288 (379)
111 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-34 6.6E-39 261.8 28.5 275 68-416 43-333 (343)
112 2j04_A TAU60, YPL007P, hypothe 100.0 3.9E-35 1.3E-39 270.7 24.0 277 59-415 13-296 (588)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-33 3.8E-38 266.5 34.3 310 61-416 4-391 (450)
114 4gq1_A NUP37; propeller, trans 100.0 1.9E-34 6.6E-39 266.3 27.4 328 6-415 26-388 (393)
115 3jro_A Fusion protein of prote 100.0 3.4E-34 1.2E-38 286.2 26.9 253 2-293 13-287 (753)
116 2xyi_A Probable histone-bindin 100.0 3E-33 1E-37 261.8 29.5 267 55-375 122-411 (430)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.3E-33 2.5E-37 261.0 31.6 318 2-373 8-390 (450)
118 4gga_A P55CDC, cell division c 100.0 5.9E-33 2E-37 259.2 30.4 255 2-390 151-411 (420)
119 3lrv_A PRE-mRNA-splicing facto 100.0 8.6E-33 2.9E-37 250.9 28.7 272 5-372 43-331 (343)
120 3bws_A Protein LP49; two-domai 100.0 4.8E-32 1.6E-36 254.5 33.9 280 3-374 127-432 (433)
121 1l0q_A Surface layer protein; 100.0 1.2E-31 4.1E-36 248.3 34.8 269 74-419 3-278 (391)
122 1nir_A Nitrite reductase; hemo 100.0 1.2E-31 4.1E-36 256.2 35.7 339 5-422 144-520 (543)
123 4gq1_A NUP37; propeller, trans 100.0 2.2E-33 7.5E-38 259.2 22.2 253 4-291 95-389 (393)
124 2w18_A PALB2, fancn, partner a 100.0 7E-32 2.4E-36 233.8 27.6 278 12-414 56-355 (356)
125 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-31 6.2E-36 242.9 30.6 291 1-375 22-337 (355)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.9E-30 6.4E-35 240.9 31.0 294 7-398 71-410 (415)
127 4ggc_A P55CDC, cell division c 100.0 3.6E-30 1.2E-34 231.2 29.5 239 2-292 71-316 (318)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.7E-30 5.8E-35 241.2 27.5 300 60-435 61-406 (415)
129 1nir_A Nitrite reductase; hemo 100.0 1.4E-28 4.8E-33 235.1 31.2 289 68-420 144-462 (543)
130 2ecf_A Dipeptidyl peptidase IV 100.0 4.2E-29 1.4E-33 250.6 27.3 340 3-418 41-461 (741)
131 1k32_A Tricorn protease; prote 100.0 3.5E-28 1.2E-32 251.8 31.8 337 3-431 57-476 (1045)
132 2w18_A PALB2, fancn, partner a 100.0 8.3E-28 2.8E-32 208.5 22.3 209 3-233 116-355 (356)
133 1xfd_A DIP, dipeptidyl aminope 100.0 1E-27 3.5E-32 239.9 26.0 314 3-404 21-428 (723)
134 1k32_A Tricorn protease; prote 100.0 6.2E-27 2.1E-31 242.5 30.0 327 5-423 21-416 (1045)
135 3u4y_A Uncharacterized protein 100.0 8.1E-26 2.8E-30 204.1 32.8 308 4-396 3-325 (331)
136 2z3z_A Dipeptidyl aminopeptida 100.0 1.4E-26 4.7E-31 231.0 29.2 332 10-418 35-437 (706)
137 1ri6_A Putative isomerase YBHE 100.0 1E-25 3.4E-30 204.5 32.1 311 11-398 6-335 (343)
138 3u4y_A Uncharacterized protein 100.0 2.7E-25 9.1E-30 200.7 33.1 287 68-421 4-309 (331)
139 2ecf_A Dipeptidyl peptidase IV 100.0 2.8E-26 9.5E-31 230.1 28.1 293 61-416 36-413 (741)
140 2ojh_A Uncharacterized protein 100.0 4.3E-26 1.5E-30 202.3 25.9 257 15-407 17-293 (297)
141 1ri6_A Putative isomerase YBHE 99.9 4.9E-26 1.7E-30 206.5 25.9 286 75-415 7-307 (343)
142 1pby_B Quinohemoprotein amine 99.9 1.8E-25 6E-30 202.4 24.1 278 11-385 2-321 (337)
143 1pby_B Quinohemoprotein amine 99.9 4.8E-25 1.6E-29 199.5 25.1 270 74-419 2-313 (337)
144 3vgz_A Uncharacterized protein 99.9 5.6E-24 1.9E-28 193.8 31.9 276 60-407 39-335 (353)
145 3o4h_A Acylamino-acid-releasin 99.9 8.5E-25 2.9E-29 212.9 27.5 272 60-416 20-315 (582)
146 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-24 4.2E-29 216.9 28.0 296 3-393 86-452 (706)
147 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-25 4.9E-30 224.4 21.3 299 63-416 18-393 (723)
148 1jmx_B Amine dehydrogenase; ox 99.9 1.3E-23 4.4E-28 191.1 30.9 288 3-384 4-335 (349)
149 3hfq_A Uncharacterized protein 99.9 1.5E-23 5.1E-28 190.5 31.1 287 82-420 15-323 (347)
150 1z68_A Fibroblast activation p 99.9 1.7E-24 5.7E-29 216.4 26.1 328 3-420 20-447 (719)
151 3hfq_A Uncharacterized protein 99.9 7.5E-23 2.6E-27 185.9 31.2 263 59-378 37-323 (347)
152 3vgz_A Uncharacterized protein 99.9 2.9E-23 9.9E-28 189.1 26.7 270 4-365 46-335 (353)
153 1jmx_B Amine dehydrogenase; ox 99.9 7.8E-23 2.7E-27 185.9 26.1 296 66-419 4-328 (349)
154 3pe7_A Oligogalacturonate lyas 99.9 7.4E-23 2.5E-27 189.0 26.0 290 55-415 24-381 (388)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 9.7E-23 3.3E-27 189.6 25.9 268 3-290 41-332 (434)
156 3scy_A Hypothetical bacterial 99.9 2.9E-21 1E-25 176.4 32.1 302 73-422 13-345 (361)
157 3scy_A Hypothetical bacterial 99.9 2.5E-21 8.7E-26 176.8 31.4 306 8-394 11-360 (361)
158 4a5s_A Dipeptidyl peptidase 4 99.9 2.3E-21 7.8E-26 193.7 31.5 330 3-419 21-452 (740)
159 3o4h_A Acylamino-acid-releasin 99.9 8.8E-23 3E-27 198.7 20.4 262 3-374 26-315 (582)
160 2oiz_A Aromatic amine dehydrog 99.9 3.4E-21 1.2E-25 175.0 28.9 308 8-398 13-360 (361)
161 2ojh_A Uncharacterized protein 99.9 1.4E-21 4.6E-26 173.2 23.4 226 124-421 18-263 (297)
162 1z68_A Fibroblast activation p 99.9 5.2E-22 1.8E-26 198.3 21.3 291 66-416 20-391 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.1E-20 2.4E-24 167.2 30.3 262 60-417 38-342 (365)
164 2oit_A Nucleoporin 214KDA; NH2 99.9 2.1E-20 7.3E-25 173.8 26.3 166 3-184 97-280 (434)
165 3pe7_A Oligogalacturonate lyas 99.9 3.8E-20 1.3E-24 170.8 27.8 240 3-292 40-330 (388)
166 3c5m_A Oligogalacturonate lyas 99.9 2.1E-20 7.1E-25 173.0 23.1 281 63-420 37-388 (396)
167 1qks_A Cytochrome CD1 nitrite 99.9 3E-18 1E-22 163.2 37.2 332 8-420 165-542 (567)
168 4a5s_A Dipeptidyl peptidase 4 99.8 6.6E-20 2.3E-24 183.1 22.6 299 63-426 18-363 (740)
169 3azo_A Aminopeptidase; POP fam 99.8 6E-19 2E-23 174.5 26.5 301 56-422 18-375 (662)
170 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.6E-19 9E-24 163.4 21.3 249 3-291 44-341 (365)
171 2oiz_A Aromatic amine dehydrog 99.8 1.8E-18 6.2E-23 157.0 25.8 280 72-419 14-339 (361)
172 3azo_A Aminopeptidase; POP fam 99.8 1.1E-18 3.6E-23 172.7 25.7 239 4-289 29-321 (662)
173 3c5m_A Oligogalacturonate lyas 99.8 6.1E-19 2.1E-23 163.1 22.4 234 2-292 39-330 (396)
174 2dg1_A DRP35, lactonase; beta 99.8 2.6E-17 8.7E-22 148.4 32.0 277 1-406 8-300 (333)
175 3fvz_A Peptidyl-glycine alpha- 99.8 1E-17 3.4E-22 150.5 28.8 262 61-417 23-323 (329)
176 2gop_A Trilobed protease; beta 99.8 1.2E-17 4.2E-22 151.4 27.6 269 62-427 15-341 (347)
177 1q7f_A NHL, brain tumor CG1071 99.8 3.4E-16 1.2E-20 137.7 30.1 246 58-375 26-281 (286)
178 1q7f_A NHL, brain tumor CG1071 99.8 1.7E-16 6E-21 139.6 28.0 243 4-291 35-280 (286)
179 2z2n_A Virginiamycin B lyase; 99.8 3.8E-15 1.3E-19 131.9 36.5 286 57-418 10-297 (299)
180 1qks_A Cytochrome CD1 nitrite 99.8 6E-16 2E-20 147.4 32.7 288 71-417 165-478 (567)
181 2xdw_A Prolyl endopeptidase; a 99.8 2.7E-16 9.3E-21 156.4 30.8 252 59-418 122-416 (710)
182 3dsm_A Uncharacterized protein 99.8 1.4E-15 5E-20 136.1 29.9 286 18-393 15-319 (328)
183 2bkl_A Prolyl endopeptidase; m 99.8 1.6E-16 5.3E-21 157.7 25.8 251 59-422 118-403 (695)
184 2mad_H Methylamine dehydrogena 99.8 5.7E-15 2E-19 134.0 33.8 292 6-421 28-355 (373)
185 2gop_A Trilobed protease; beta 99.8 9.1E-16 3.1E-20 139.1 28.4 260 9-386 23-341 (347)
186 3fvz_A Peptidyl-glycine alpha- 99.8 2.9E-16 9.8E-21 141.0 24.1 241 3-291 28-322 (329)
187 3sjl_D Methylamine dehydrogena 99.7 7.7E-15 2.6E-19 131.0 30.8 304 5-396 39-384 (386)
188 3e5z_A Putative gluconolactona 99.7 3.7E-15 1.3E-19 131.7 28.2 246 101-420 24-290 (296)
189 3no2_A Uncharacterized protein 99.7 1.6E-15 5.5E-20 131.7 25.2 224 8-281 3-232 (276)
190 3dsm_A Uncharacterized protein 99.7 1.3E-15 4.5E-20 136.4 23.7 266 81-419 15-304 (328)
191 3sjl_D Methylamine dehydrogena 99.7 1.6E-15 5.3E-20 135.5 22.8 286 67-420 38-367 (386)
192 2qc5_A Streptogramin B lactona 99.7 2.3E-13 7.8E-18 120.4 35.8 281 59-415 17-299 (300)
193 2dg1_A DRP35, lactonase; beta 99.7 1.8E-14 6.1E-19 129.7 28.4 238 3-280 49-298 (333)
194 3e5z_A Putative gluconolactona 99.7 2.9E-15 9.9E-20 132.4 22.6 232 3-292 32-287 (296)
195 2z2n_A Virginiamycin B lyase; 99.7 1.5E-13 5.2E-18 121.4 33.4 232 4-289 20-253 (299)
196 3c75_H MADH, methylamine dehyd 99.7 2.4E-14 8.2E-19 130.3 27.2 290 7-381 81-409 (426)
197 1rwi_B Serine/threonine-protei 99.7 1.3E-14 4.6E-19 126.3 24.0 242 106-420 25-268 (270)
198 2xdw_A Prolyl endopeptidase; a 99.7 7.2E-15 2.5E-19 146.1 24.9 241 3-293 129-416 (710)
199 1rwi_B Serine/threonine-protei 99.7 3.8E-14 1.3E-18 123.4 25.2 240 63-376 25-266 (270)
200 1yr2_A Prolyl oligopeptidase; 99.6 6.9E-14 2.4E-18 139.6 27.6 251 59-422 160-447 (741)
201 2qc5_A Streptogramin B lactona 99.6 1.1E-12 3.9E-17 115.9 32.5 234 4-290 25-259 (300)
202 2bkl_A Prolyl endopeptidase; m 99.6 5.7E-15 2E-19 146.4 18.8 237 3-292 125-398 (695)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6.1E-13 2.1E-17 118.5 29.0 251 58-417 14-300 (314)
204 3no2_A Uncharacterized protein 99.6 8.1E-13 2.8E-17 114.7 26.0 190 72-293 4-197 (276)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1E-12 3.5E-17 117.1 26.9 242 3-291 22-299 (314)
206 3c75_H MADH, methylamine dehyd 99.6 4.2E-13 1.4E-17 122.2 24.0 290 71-420 82-406 (426)
207 2qe8_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 121.8 19.2 279 62-413 17-318 (343)
208 1mda_H Methylamine dehydrogena 99.5 1.4E-12 4.7E-17 116.9 21.1 290 12-395 34-366 (368)
209 3g4e_A Regucalcin; six bladed 99.5 1.3E-11 4.6E-16 108.7 27.1 226 5-280 19-260 (297)
210 1yr2_A Prolyl oligopeptidase; 99.5 8.9E-13 3E-17 131.7 21.7 240 3-293 167-443 (741)
211 3hrp_A Uncharacterized protein 99.5 1.1E-11 3.9E-16 114.0 27.4 271 62-372 131-408 (409)
212 1xip_A Nucleoporin NUP159; bet 99.5 2.7E-13 9.2E-18 121.7 15.5 181 63-280 39-232 (388)
213 3g4e_A Regucalcin; six bladed 99.5 9.1E-11 3.1E-15 103.4 31.6 238 58-404 9-260 (297)
214 2mad_H Methylamine dehydrogena 99.5 2.1E-11 7.2E-16 110.5 27.7 252 3-295 70-354 (373)
215 3iuj_A Prolyl endopeptidase; h 99.5 5.6E-12 1.9E-16 124.7 25.6 121 59-184 126-270 (693)
216 1xip_A Nucleoporin NUP159; bet 99.5 1.7E-12 5.8E-17 116.5 17.3 186 4-221 43-230 (388)
217 2ghs_A AGR_C_1268P; regucalcin 99.5 4.2E-10 1.4E-14 100.5 33.0 228 63-404 50-290 (326)
218 3hrp_A Uncharacterized protein 99.5 3.3E-11 1.1E-15 110.9 26.3 256 105-414 131-408 (409)
219 1yiq_A Quinohemoprotein alcoho 99.5 1E-11 3.6E-16 121.9 24.0 367 10-403 70-536 (689)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.5 1.3E-10 4.5E-15 106.2 29.1 318 9-413 52-375 (376)
221 3dr2_A Exported gluconolactona 99.4 5.8E-11 2E-15 105.1 24.8 233 102-409 42-300 (305)
222 1mda_H Methylamine dehydrogena 99.4 4.8E-12 1.6E-16 113.4 17.6 267 84-420 47-350 (368)
223 1kb0_A Quinohemoprotein alcoho 99.4 3.8E-11 1.3E-15 117.6 25.2 383 10-416 77-567 (677)
224 2ghs_A AGR_C_1268P; regucalcin 99.4 1.2E-10 4.3E-15 103.9 26.5 223 4-280 54-290 (326)
225 3iuj_A Prolyl endopeptidase; h 99.4 7.3E-12 2.5E-16 123.9 20.3 236 3-292 133-406 (693)
226 3dr2_A Exported gluconolactona 99.4 1.2E-10 4.2E-15 103.0 24.7 236 55-366 38-299 (305)
227 3hxj_A Pyrrolo-quinoline quino 99.4 1.1E-11 3.8E-16 111.1 16.7 297 10-418 30-326 (330)
228 2ece_A 462AA long hypothetical 99.3 7.6E-09 2.6E-13 93.1 29.3 240 117-404 94-399 (462)
229 2hz6_A Endoplasmic reticulum t 99.3 1.1E-12 3.6E-17 119.3 4.0 185 9-239 8-196 (369)
230 1npe_A Nidogen, entactin; glyc 99.3 1.5E-08 5.2E-13 87.5 29.7 253 73-398 1-263 (267)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.3 5.6E-09 1.9E-13 95.4 27.0 281 72-420 52-341 (376)
232 4a2l_A BT_4663, two-component 99.2 2.9E-08 1E-12 100.0 34.2 300 64-420 175-484 (795)
233 1fwx_A Nitrous oxide reductase 99.2 6.9E-11 2.3E-15 110.1 13.0 324 13-419 18-434 (595)
234 1yiq_A Quinohemoprotein alcoho 99.2 1.4E-09 4.9E-14 106.8 23.0 331 73-420 70-509 (689)
235 2ece_A 462AA long hypothetical 99.2 3.7E-09 1.3E-13 95.1 23.0 252 8-280 93-399 (462)
236 2qe8_A Uncharacterized protein 99.2 1.7E-09 5.8E-14 97.3 20.8 235 3-281 21-310 (343)
237 1kb0_A Quinohemoprotein alcoho 99.2 1.4E-09 4.8E-14 106.6 20.8 325 73-420 77-511 (677)
238 2iwa_A Glutamine cyclotransfer 99.2 1E-08 3.6E-13 86.6 23.0 205 4-236 26-238 (266)
239 4a2l_A BT_4663, two-component 99.2 7.4E-07 2.5E-11 89.8 39.0 296 61-420 262-575 (795)
240 2hz6_A Endoplasmic reticulum t 99.1 8.9E-11 3E-15 106.6 9.0 142 72-237 8-151 (369)
241 1kv9_A Type II quinohemoprotei 99.1 1.6E-08 5.6E-13 99.0 25.2 212 10-239 66-337 (668)
242 1npe_A Nidogen, entactin; glyc 99.1 4.3E-07 1.5E-11 78.4 29.5 231 119-419 2-241 (267)
243 3nol_A Glutamine cyclotransfer 99.1 6.8E-08 2.3E-12 80.6 23.0 219 48-288 28-251 (262)
244 2iwa_A Glutamine cyclotransfer 99.1 1.6E-07 5.4E-12 79.5 25.2 225 50-292 8-238 (266)
245 1fwx_A Nitrous oxide reductase 99.1 3.5E-09 1.2E-13 98.8 16.1 194 8-235 99-361 (595)
246 3nol_A Glutamine cyclotransfer 99.1 1.4E-08 4.6E-13 84.8 17.4 189 5-224 49-245 (262)
247 3nok_A Glutaminyl cyclase; bet 99.0 1.8E-08 6.2E-13 83.9 17.4 186 9-224 64-255 (268)
248 3v9f_A Two-component system se 99.0 2.1E-06 7.1E-11 86.3 35.4 293 61-421 257-573 (781)
249 2ad6_A Methanol dehydrogenase 99.0 6E-08 2.1E-12 93.0 22.8 211 10-243 62-343 (571)
250 3hxj_A Pyrrolo-quinoline quino 99.0 2.4E-08 8.2E-13 89.3 18.8 218 73-374 107-324 (330)
251 1w6s_A Methanol dehydrogenase 99.0 1.2E-07 4.2E-12 90.7 24.5 216 10-242 62-349 (599)
252 2fp8_A Strictosidine synthase; 99.0 6.4E-07 2.2E-11 79.6 26.4 103 62-168 19-143 (322)
253 3v9f_A Two-component system se 99.0 1.1E-05 3.7E-10 81.1 37.6 294 61-419 210-527 (781)
254 3qqz_A Putative uncharacterize 98.9 1.3E-06 4.4E-11 73.5 25.0 222 55-290 20-252 (255)
255 1flg_A Protein (quinoprotein e 98.9 8.6E-07 2.9E-11 85.1 26.9 169 73-243 117-363 (582)
256 3mbr_X Glutamine cyclotransfer 98.9 2.8E-07 9.7E-12 76.2 19.7 191 6-226 28-226 (243)
257 3mbr_X Glutamine cyclotransfer 98.9 2.5E-06 8.7E-11 70.5 24.9 213 50-282 8-224 (243)
258 2p4o_A Hypothetical protein; p 98.9 1.6E-05 5.5E-10 69.9 31.9 124 52-183 23-148 (306)
259 3nok_A Glutaminyl cyclase; bet 98.9 9.3E-07 3.2E-11 73.7 21.5 208 51-281 43-254 (268)
260 1kv9_A Type II quinohemoprotei 98.9 3E-07 1E-11 90.1 21.5 327 73-420 66-492 (668)
261 3v64_C Agrin; beta propeller, 98.8 2.4E-05 8.3E-10 70.0 30.8 197 62-291 34-234 (349)
262 1ijq_A LDL receptor, low-densi 98.8 2.8E-05 9.5E-10 68.6 30.2 236 75-382 3-246 (316)
263 2p4o_A Hypothetical protein; p 98.8 3.4E-06 1.2E-10 74.2 23.4 224 4-280 37-276 (306)
264 2xe4_A Oligopeptidase B; hydro 98.8 1E-06 3.5E-11 87.7 21.8 193 4-233 179-398 (751)
265 3v65_B Low-density lipoprotein 98.8 1.4E-05 4.6E-10 72.8 27.5 254 65-393 80-337 (386)
266 2ad6_A Methanol dehydrogenase 98.7 8.6E-07 3E-11 85.0 19.8 331 73-420 62-498 (571)
267 3qqz_A Putative uncharacterize 98.7 1E-05 3.4E-10 68.0 22.9 216 145-415 21-252 (255)
268 3p5b_L Low density lipoprotein 98.7 0.00012 4.2E-09 66.8 31.9 248 75-393 85-339 (400)
269 3v64_C Agrin; beta propeller, 98.7 4E-05 1.4E-09 68.6 28.0 221 128-418 53-277 (349)
270 3v65_B Low-density lipoprotein 98.7 1.4E-05 4.8E-10 72.7 25.3 227 120-418 89-320 (386)
271 1w6s_A Methanol dehydrogenase 98.7 3.8E-06 1.3E-10 80.5 22.4 213 73-297 62-348 (599)
272 1k3i_A Galactose oxidase precu 98.7 1.1E-06 3.7E-11 86.3 19.2 117 66-186 190-327 (656)
273 2fp8_A Strictosidine synthase; 98.6 1.2E-05 4.2E-10 71.3 22.9 254 3-291 23-313 (322)
274 3s94_A LRP-6, low-density lipo 98.6 0.00053 1.8E-08 66.2 37.3 159 62-237 84-245 (619)
275 1k3i_A Galactose oxidase precu 98.6 5.1E-06 1.7E-10 81.6 21.3 109 9-139 197-325 (656)
276 3sov_A LRP-6, low-density lipo 98.6 9.2E-05 3.1E-09 65.2 26.9 237 75-383 6-247 (318)
277 1flg_A Protein (quinoprotein e 98.6 2.1E-05 7.1E-10 75.5 24.5 114 72-190 68-201 (582)
278 3sov_A LRP-6, low-density lipo 98.6 0.00016 5.5E-09 63.6 28.1 225 127-419 12-241 (318)
279 1ijq_A LDL receptor, low-densi 98.5 0.00024 8.3E-09 62.6 28.8 230 12-294 3-241 (316)
280 2xe4_A Oligopeptidase B; hydro 98.5 9E-05 3.1E-09 73.8 27.6 117 106-236 175-305 (751)
281 3p5b_L Low density lipoprotein 98.4 0.00049 1.7E-08 62.8 28.7 229 120-419 85-323 (400)
282 4hw6_A Hypothetical protein, I 98.4 0.00021 7.3E-09 65.8 26.4 158 63-234 140-303 (433)
283 3tc9_A Hypothetical hydrolase; 98.4 0.00036 1.2E-08 64.3 27.8 159 63-235 138-301 (430)
284 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0016 5.4E-08 63.0 37.0 199 62-293 37-239 (628)
285 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0009 3.1E-08 64.8 31.1 187 74-291 7-197 (628)
286 3m0c_C LDL receptor, low-densi 98.4 0.00047 1.6E-08 68.3 29.6 187 75-291 397-589 (791)
287 2xzh_A Clathrin heavy chain 1; 98.4 0.00074 2.5E-08 57.8 28.5 271 81-419 47-335 (365)
288 3kya_A Putative phosphatase; s 98.4 0.00036 1.2E-08 64.6 25.8 274 107-420 141-479 (496)
289 1n7d_A LDL receptor, low-densi 98.3 5.6E-06 1.9E-10 81.3 13.8 240 83-394 386-634 (699)
290 3s94_A LRP-6, low-density lipo 98.3 0.0028 9.7E-08 61.2 34.6 224 127-419 325-554 (619)
291 4hw6_A Hypothetical protein, I 98.3 0.00041 1.4E-08 64.0 24.7 249 12-290 154-432 (433)
292 3ei3_A DNA damage-binding prot 98.3 0.0039 1.3E-07 64.6 33.9 76 61-136 553-635 (1158)
293 2xbg_A YCF48-like protein; pho 98.2 0.0022 7.4E-08 56.8 33.1 275 61-414 35-320 (327)
294 3tc9_A Hypothetical hydrolase; 98.2 0.00038 1.3E-08 64.2 22.0 149 6-182 144-301 (430)
295 2xbg_A YCF48-like protein; pho 98.1 0.00068 2.3E-08 60.0 22.0 200 61-289 121-320 (327)
296 3kya_A Putative phosphatase; s 98.1 0.0049 1.7E-07 57.1 27.7 161 63-234 140-340 (496)
297 2p9w_A MAL S 1 allergenic prot 98.1 0.00064 2.2E-08 58.8 19.6 170 57-235 8-215 (334)
298 3m0c_C LDL receptor, low-densi 98.1 0.0059 2E-07 60.5 29.1 163 60-236 422-590 (791)
299 3amr_A 3-phytase; beta-propell 98.0 0.0013 4.6E-08 57.4 20.9 193 72-290 39-262 (355)
300 1bpo_A Protein (clathrin); cla 98.0 0.0074 2.5E-07 54.0 31.3 272 81-420 46-335 (494)
301 2ism_A Putative oxidoreductase 98.0 0.0044 1.5E-07 55.4 24.4 261 106-404 32-333 (352)
302 2g8s_A Glucose/sorbosone dehyd 98.0 0.0078 2.7E-07 53.8 27.0 280 106-409 19-347 (353)
303 1n7d_A LDL receptor, low-densi 97.8 0.0001 3.5E-09 72.5 11.9 222 127-419 385-617 (699)
304 3amr_A 3-phytase; beta-propell 97.8 0.0039 1.3E-07 54.5 20.3 194 8-234 38-262 (355)
305 2p9w_A MAL S 1 allergenic prot 97.8 0.0012 4E-08 57.2 15.6 172 206-416 15-215 (334)
306 3sre_A PON1, serum paraoxonase 97.7 0.013 4.4E-07 51.9 22.0 159 3-182 54-252 (355)
307 3a9g_A Putative uncharacterize 97.7 0.029 9.8E-07 50.1 27.1 254 105-404 29-330 (354)
308 2vpj_A Kelch-like protein 12; 97.5 0.017 5.8E-07 50.2 20.1 151 72-239 62-235 (301)
309 2g8s_A Glucose/sorbosone dehyd 97.4 0.061 2.1E-06 47.9 22.8 72 205-288 272-349 (353)
310 1xi4_A Clathrin heavy chain; a 97.3 0.037 1.3E-06 57.3 22.0 271 81-419 46-334 (1630)
311 2xn4_A Kelch-like protein 2; s 97.3 0.033 1.1E-06 48.4 19.6 66 354-421 204-281 (302)
312 3ii7_A Kelch-like protein 7; p 97.3 0.054 1.9E-06 47.1 21.1 230 10-292 12-273 (306)
313 3ei3_A DNA damage-binding prot 97.3 0.21 7.3E-06 51.9 36.2 178 174-416 808-999 (1158)
314 2ism_A Putative oxidoreductase 97.3 0.089 3.1E-06 46.8 28.9 103 62-170 31-153 (352)
315 3pbp_A Nucleoporin NUP82; beta 97.3 0.061 2.1E-06 48.2 19.9 156 70-231 29-208 (452)
316 1zgk_A Kelch-like ECH-associat 97.2 0.078 2.7E-06 46.2 20.9 150 72-239 70-244 (308)
317 1cru_A Protein (soluble quinop 97.2 0.14 4.7E-06 47.4 32.3 110 105-223 27-162 (454)
318 2vpj_A Kelch-like protein 12; 97.2 0.056 1.9E-06 46.9 19.5 149 72-237 112-280 (301)
319 3das_A Putative oxidoreductase 97.2 0.11 3.7E-06 45.8 28.0 112 56-170 26-158 (347)
320 1tl2_A L10, protein (tachylect 97.2 0.065 2.2E-06 43.2 17.6 155 205-410 42-204 (236)
321 3pbp_A Nucleoporin NUP82; beta 97.1 0.069 2.3E-06 47.9 19.0 114 63-179 67-209 (452)
322 4asc_A Kelch repeat and BTB do 97.1 0.096 3.3E-06 45.8 20.5 189 11-239 6-225 (315)
323 3ii7_A Kelch-like protein 7; p 97.1 0.063 2.2E-06 46.7 19.1 150 72-238 101-275 (306)
324 4asc_A Kelch repeat and BTB do 97.1 0.061 2.1E-06 47.0 19.0 105 120-239 7-130 (315)
325 3das_A Putative oxidoreductase 97.1 0.13 4.5E-06 45.2 29.5 260 104-404 31-326 (347)
326 1tl2_A L10, protein (tachylect 97.1 0.047 1.6E-06 44.1 15.8 118 151-286 41-158 (236)
327 3a9g_A Putative uncharacterize 97.1 0.15 5.2E-06 45.3 29.3 104 62-170 29-153 (354)
328 2xn4_A Kelch-like protein 2; s 97.1 0.029 1E-06 48.7 16.3 150 72-238 108-279 (302)
329 3sre_A PON1, serum paraoxonase 97.0 0.16 5.4E-06 44.9 24.3 197 63-288 51-295 (355)
330 1zgk_A Kelch-like ECH-associat 97.0 0.15 5.1E-06 44.3 22.3 151 71-239 23-197 (308)
331 2woz_A Kelch repeat and BTB do 96.8 0.16 5.4E-06 44.4 19.0 153 69-239 53-235 (318)
332 2woz_A Kelch repeat and BTB do 96.8 0.23 7.9E-06 43.4 21.5 147 75-239 18-188 (318)
333 3ott_A Two-component system se 96.8 0.51 1.7E-05 47.1 35.1 296 62-420 191-506 (758)
334 1xi4_A Clathrin heavy chain; a 96.5 0.18 6.3E-06 52.4 18.8 223 127-419 47-292 (1630)
335 2be1_A Serine/threonine-protei 96.3 0.35 1.2E-05 42.4 17.5 202 10-240 10-236 (339)
336 2xzh_A Clathrin heavy chain 1; 96.2 0.51 1.7E-05 40.7 29.7 202 68-292 73-291 (365)
337 3s25_A Hypothetical 7-bladed b 96.2 0.56 1.9E-05 40.5 24.2 173 70-291 22-216 (302)
338 2uvk_A YJHT; unknown function, 95.9 0.85 2.9E-05 40.4 19.1 95 72-172 19-128 (357)
339 1cru_A Protein (soluble quinop 95.9 1.1 3.7E-05 41.3 31.6 106 62-170 27-162 (454)
340 2zwa_A Leucine carboxyl methyl 95.9 0.59 2E-05 45.9 18.5 158 72-239 451-639 (695)
341 2uvk_A YJHT; unknown function, 95.8 0.25 8.5E-06 44.0 14.8 142 83-239 168-346 (357)
342 2be1_A Serine/threonine-protei 95.8 0.19 6.4E-06 44.1 13.1 116 74-191 11-139 (339)
343 3sbq_A Nitrous-oxide reductase 95.7 1 3.5E-05 42.0 17.6 111 13-126 73-196 (638)
344 3sbq_A Nitrous-oxide reductase 95.5 1.6 5.5E-05 40.7 26.7 94 75-170 72-195 (638)
345 2zwa_A Leucine carboxyl methyl 95.2 1.6 5.4E-05 42.9 19.0 154 117-292 397-578 (695)
346 1bpo_A Protein (clathrin); cla 95.2 1.7 5.7E-05 39.3 32.0 203 67-292 71-290 (494)
347 3q6k_A 43.2 kDa salivary prote 95.2 1.6 5.4E-05 38.9 17.9 192 174-404 124-342 (381)
348 3ott_A Two-component system se 95.1 3 0.0001 41.5 41.1 291 62-415 146-447 (758)
349 3s25_A Hypothetical 7-bladed b 94.8 1.8 6.2E-05 37.3 26.2 178 67-291 58-255 (302)
350 4gq2_M Nucleoporin NUP120; bet 90.4 4.3 0.00015 41.5 13.9 38 62-99 236-273 (950)
351 3b7f_A Glycosyl hydrolase, BNR 90.0 10 0.00035 33.9 30.4 164 61-232 54-259 (394)
352 4hvt_A Ritya.17583.B, post-pro 89.1 18 0.00062 35.5 21.0 207 63-292 130-382 (711)
353 3qhy_B Beta-lactamase inhibito 86.0 15 0.00051 31.1 23.7 230 105-423 24-253 (282)
354 2wg3_C Hedgehog-interacting pr 85.8 21 0.00073 32.8 29.0 54 106-161 15-79 (463)
355 2wg3_C Hedgehog-interacting pr 83.5 27 0.00093 32.1 27.1 108 62-172 14-159 (463)
356 3b7f_A Glycosyl hydrolase, BNR 80.9 30 0.001 30.8 28.6 209 74-288 23-259 (394)
357 4gq2_M Nucleoporin NUP120; bet 80.7 29 0.00099 35.5 14.1 39 152-191 237-275 (950)
358 4fhn_B Nucleoporin NUP120; pro 80.0 3.6 0.00012 43.1 7.5 38 62-99 238-275 (1139)
359 4hvt_A Ritya.17583.B, post-pro 79.6 49 0.0017 32.4 21.9 241 6-290 137-429 (711)
360 3qhy_B Beta-lactamase inhibito 71.4 45 0.0016 28.1 20.8 183 63-291 64-246 (282)
361 3q6k_A 43.2 kDa salivary prote 70.1 59 0.002 28.9 21.8 118 61-182 151-306 (381)
362 3zwu_A Alkaline phosphatase PH 67.8 20 0.00068 34.1 8.5 58 345-403 478-548 (592)
363 3f7f_A Nucleoporin NUP120; nuc 66.5 14 0.00049 35.8 7.2 36 62-99 222-257 (729)
364 1sqj_A OXG-RCBH, oligoxylogluc 65.1 1.1E+02 0.0039 30.3 21.8 118 104-227 14-144 (789)
365 4a9v_A PHOX; hydrolase, beta-p 60.8 37 0.0013 32.0 8.6 58 345-403 478-548 (592)
366 1sqj_A OXG-RCBH, oligoxylogluc 60.6 1.4E+02 0.0047 29.7 16.1 156 61-225 14-190 (789)
367 3zwu_A Alkaline phosphatase PH 59.8 39 0.0013 32.1 8.9 59 63-124 477-548 (592)
368 4a9v_A PHOX; hydrolase, beta-p 56.2 65 0.0022 30.4 9.4 61 62-125 476-549 (592)
369 3kci_A Probable E3 ubiquitin-p 53.7 1.2E+02 0.0041 26.9 28.0 213 63-291 106-345 (389)
370 3mvd_K Regulator of chromosome 48.7 1.5E+02 0.0051 26.6 30.2 115 106-236 76-208 (423)
371 4fhn_B Nucleoporin NUP120; pro 47.4 18 0.00062 37.9 4.9 36 345-381 240-275 (1139)
372 3uc1_A DNA gyrase subunit A; D 39.4 1.9E+02 0.0064 25.0 25.1 170 62-237 42-230 (327)
373 3f7f_A Nucleoporin NUP120; nuc 36.2 3.2E+02 0.011 26.7 18.6 35 345-382 224-258 (729)
374 3kci_A Probable E3 ubiquitin-p 32.5 2.6E+02 0.0089 24.6 29.8 172 106-291 106-293 (389)
375 1zi0_A DNA gyrase subunit A; b 32.1 2.4E+02 0.0081 24.0 26.4 253 117-416 2-277 (307)
376 3a0f_A Xyloglucanase; beta-pro 28.2 4.4E+02 0.015 26.0 17.5 162 59-226 18-203 (763)
377 2cn3_A Xyloglucanase, beta-1,4 28.2 4.3E+02 0.015 25.9 26.0 114 106-225 24-153 (737)
378 3mez_B Mannose-specific lectin 24.4 1.8E+02 0.0061 20.1 10.2 26 265-291 59-84 (113)
379 2cn3_A Xyloglucanase, beta-1,4 23.3 5.3E+02 0.018 25.2 19.1 109 62-172 23-153 (737)
380 1q47_A Semaphorin 3A; beta pro 20.6 2.8E+02 0.0095 25.7 7.4 55 357-411 423-487 (495)
381 1q47_A Semaphorin 3A; beta pro 20.5 2E+02 0.007 26.6 6.5 70 152-230 405-487 (495)
382 3j1r_A Archaeal adhesion filam 20.0 88 0.003 14.9 2.1 14 444-458 9-22 (26)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-51 Score=400.76 Aligned_cols=398 Identities=15% Similarity=0.206 Sum_probs=295.6
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..++|+|++++||+|+.||+|+|||+++++.. ....+.+|.++|.+++|+|+|++|++++.
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-------------------~~~~~~~~~~~v~~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------LKTTIPVFSGPVKDISWDSESKRIAAVGE 123 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------EEEEEECSSSCEEEEEECTTSCEEEEEEC
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcce-------------------eeEeecccCCceEEEEECCCCCEEEEEEC
Confidence 35789999999999999999999999765433 12567899999999999999999999886
Q ss_pred C----CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCe-EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 82 D----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 82 d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
+ +.|++|| .++....+ .+|...|.+++|+| ++. .|++++.|++|++||....+... .+.+|...|.++
T Consensus 124 ~~~~~~~v~~wd--~~~~~~~l-~gh~~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~--~l~~H~~~V~~v 196 (611)
T 1nr0_A 124 GRERFGHVFLFD--TGTSNGNL-TGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKS--TFGEHTKFVHSV 196 (611)
T ss_dssp CSSCSEEEEETT--TCCBCBCC-CCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEE--EECCCSSCEEEE
T ss_pred CCCceeEEEEee--CCCCccee-cCCCCCceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEee--eeccccCceEEE
Confidence 5 4788887 45555555 79999999999999 876 59999999999999987665544 488999999999
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
+|+|++ .+|++++.|+.|++||+++++....+..... ....|...|.+++|+|+ +.+|++++.|++|++||++++
T Consensus 197 ~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~---~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 197 RYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSL---KNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTS---SSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTT
T ss_pred EECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccc---cccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCC
Confidence 999999 5899999999999999999887665531110 01126668999999998 789999999999999999987
Q ss_pred ccCCCCCCCCCCC----------------------------cCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEE
Q 012064 237 KWDGSTDFGQPAD----------------------------YFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (471)
Q Consensus 237 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~ 287 (471)
+............ .........+|...|.+++|+|+|++|++++ ++.|++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 6543322110000 0001123456888999999999999999998 6689999
Q ss_pred ecCCCCCCCCCCC-CCc---------------------------------------------------------------
Q 012064 288 TQDMGLGPNPPPS-SPV--------------------------------------------------------------- 303 (471)
Q Consensus 288 d~~~~~~~~~~~~-~~~--------------------------------------------------------------- 303 (471)
|+.++.....+.. +..
T Consensus 352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence 9987653222100 000
Q ss_pred ----------------cccccccccCCCCCCccCCCCCCccccc--------CCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 304 ----------------STRSEASEMGSDHTSAASPSTANTDVRI--------APQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 304 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
........++|+++.+++.+.+...... .... .+|... |.+++| +|||++|+
T Consensus 432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~--v~~v~f-spdg~~la 507 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE--ITSVAF-SNNGAFLV 507 (611)
T ss_dssp SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC--EEEEEE-CTTSSEEE
T ss_pred ceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc--eEEEEE-CCCCCEEE
Confidence 0001122345555555555444321111 1122 456665 999999 99999999
Q ss_pred EeeCCCeEEEEEccC-CeeeEE--ecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC---cccCcc-hheeehh
Q 012064 360 SGSDCGRIFIWKKKG-GELIRV--IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR---ATLPTN-IEQAMMM 432 (471)
Q Consensus 360 ~g~~dg~v~iwd~~~-~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~-~~~~~~~ 432 (471)
+++.|+.|++||+.+ ++.... +.+|...|.+++|+||+++|++++.|++|++|+++.++. ..+..| ...+..+
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v 587 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 587 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEE
Confidence 999999999999987 666543 345999999999999999999999999999999987653 234455 4555555
Q ss_pred hH
Q 012064 433 TM 434 (471)
Q Consensus 433 ~~ 434 (471)
.|
T Consensus 588 ~f 589 (611)
T 1nr0_A 588 IW 589 (611)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.9e-50 Score=391.50 Aligned_cols=335 Identities=18% Similarity=0.270 Sum_probs=268.8
Q ss_pred CCCCCCCCc-EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 3 DASNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 3 ~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+++|+|+++ +|++|+.|++|++||..++++. ..+.+|.+.|.+++|+|+|++||+|+.
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~---------------------~~l~~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK---------------------STFGEHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEE---------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCeEe---------------------eeeccccCceEEEEECCCCCEEEEEEC
Confidence 467899986 5999999999999998866555 678999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeec------CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee------------
Q 012064 82 DRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET------------ 143 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------ 143 (471)
|++|++||+.+++.+..+.. +|.+.|.+++|+| ++++|++++.|++|++||+.+++....
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 99999999999998777633 7999999999999 999999999999999999976543221
Q ss_pred -----------------------------eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeee-c-
Q 012064 144 -----------------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC-R- 192 (471)
Q Consensus 144 -----------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~- 192 (471)
..+.+|...|.+++|+|++ ..+++++.|+.|++||+++++....+.. +
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 2345788999999999999 5789999999999999987754332100 0
Q ss_pred --------------------------ccCC------------c--------------------------------Cccee
Q 012064 193 --------------------------PIDD------------R--------------------------------RNYMT 202 (471)
Q Consensus 193 --------------------------~~~~------------~--------------------------------~~~~~ 202 (471)
.... . ....+
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 0000 0 00001
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 281 (471)
...+.+++|+|+ +.+|++|+.|+.|++||+...+... ... ..|...|.+++|+|+|++|++++ +
T Consensus 448 ~~~v~~va~spd-g~~lasgs~D~~v~lwd~~~~~~~~-------------~~~-~~h~~~v~~v~fspdg~~las~s~d 512 (611)
T 1nr0_A 448 SYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSE-------------VKT-IVHPAEITSVAFSNNGAFLVATDQS 512 (611)
T ss_dssp SSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEE-------------EEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEeCC-CCEEEEeCCCCeEEEEEccCCceee-------------eec-cCCCCceEEEEECCCCCEEEEEcCC
Confidence 234688999999 7899999999999999997653210 111 35678899999999999999998 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe
Q 012064 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (471)
Q Consensus 282 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g 361 (471)
+++++|++.+.... .....+.+|... |.+++| +|||++|++|
T Consensus 513 ~~v~~w~~~~~~~~-----------------------------------~~~~~~~~H~~~--V~~v~f-spdg~~lasg 554 (611)
T 1nr0_A 513 RKVIPYSVANNFEL-----------------------------------AHTNSWTFHTAK--VACVSW-SPDNVRLATG 554 (611)
T ss_dssp SCEEEEEGGGTTEE-----------------------------------SCCCCCCCCSSC--EEEEEE-CTTSSEEEEE
T ss_pred CCEEEEEcCCCCce-----------------------------------eeeeeeeecccc--eeEEEE-CCCCCEEEEE
Confidence 68999998752100 000122347665 999999 9999999999
Q ss_pred eCCCeEEEEEccCCe-ee-EEecCC-CcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 362 SDCGRIFIWKKKGGE-LI-RVIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 362 ~~dg~v~iwd~~~~~-~~-~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+.|++|++||+.+++ .. ..+.+| ...|.+++|+|+++ |++++.|++|++|++.
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999998765 33 677889 89999999999998 9999999999999973
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.2e-49 Score=365.03 Aligned_cols=290 Identities=18% Similarity=0.351 Sum_probs=258.8
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE
Q 012064 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (471)
Q Consensus 53 ~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 132 (471)
....+.+|.++|++++|+|++.+|++|+.||+|++||+.+++....+ .+|.+.|.+++|+| ++++|++|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~--~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH--SGKLLASCSADMTIKL 176 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCCCE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence 35678899999999999999999999999999999999999987777 79999999999999 9999999999999999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
||+.+.+.... +.+|...|.+++|+|++ ..+++++.|+.|++||++++.....+.. +...+.++.++
T Consensus 177 wd~~~~~~~~~--~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------h~~~v~~~~~~ 243 (410)
T 1vyh_C 177 WDFQGFECIRT--MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTG----------HREWVRMVRPN 243 (410)
T ss_dssp EETTSSCEEEC--CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEEC
T ss_pred EeCCCCceeEE--EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeC----------CCccEEEEEEC
Confidence 99988776554 78899999999999998 5789999999999999999988777654 55579999999
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC--------------------
Q 012064 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-------------------- 272 (471)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------- 272 (471)
|+ +.++++|+.|+.|++||+++.+.. .....|...|.+++|+|+
T Consensus 244 ~~-g~~l~s~s~D~~v~vwd~~~~~~~---------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 244 QD-GTLIASCSNDQTVRVWVVATKECK---------------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp TT-SSEEEEEETTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CC-CCEEEEEcCCCeEEEEECCCCcee---------------eEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 98 789999999999999999876532 234567788999999996
Q ss_pred CCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 273 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
+.+|++++ ++.|++||+.++ .....+.+|... |.+++|
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~--------------------------------------~~~~~~~~h~~~--v~~v~~- 346 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTG--------------------------------------MCLMTLVGHDNW--VRGVLF- 346 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTT--------------------------------------EEEEEEECCSSC--EEEEEE-
T ss_pred CCEEEEEeCCCeEEEEECCCC--------------------------------------ceEEEEECCCCc--EEEEEE-
Confidence 66888888 668999999873 456778888876 999999
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.||+|++|+++
T Consensus 347 ~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999863
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.2e-48 Score=349.50 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=254.2
Q ss_pred eeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
..+..+.+.+|.+.|++++|+|++++|++|+.||+|++||..+++.+..+ ..|...|.+++|+| ++++|++++.|+.
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~s~~~d~~ 120 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAP--SGNYVACGGLDNI 120 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTCE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECC--CCCEEEEEeCCCe
Confidence 34566889999999999999999999999999999999999999988777 78999999999999 9999999999999
Q ss_pred EEEEeccccCc--ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 130 VRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 130 i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
+++|++.+.+. .....+.+|...|.++.|++++ .+++++.|+.|++||+++++....+.. |...|.
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~----------h~~~v~ 188 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTG----------HTGDVM 188 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcC----------CCCceE
Confidence 99999977543 2334577899999999999987 379999999999999999987766643 556799
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEE
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i 286 (471)
+++|+|+ +.++++|+.|+.|++||+++++. ......|...|.+++|+|++++|++++ ++.|++
T Consensus 189 ~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~i 252 (340)
T 1got_B 189 SLSLAPD-TRLFVSGACDASAKLWDVREGMC---------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252 (340)
T ss_dssp EEEECTT-SSEEEEEETTSCEEEEETTTCSE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCC-CCEEEEEeCCCcEEEEECCCCee---------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 9999998 68999999999999999987652 233456788999999999999999998 668999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCe
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~ 366 (471)
||++.+. ....+..+.....+.+++| +|+|++|++|+.||.
T Consensus 253 wd~~~~~--------------------------------------~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 253 FDLRADQ--------------------------------------ELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFN 293 (340)
T ss_dssp EETTTTE--------------------------------------EEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSE
T ss_pred EECCCCc--------------------------------------EEEEEccCCcccceEEEEE-CCCCCEEEEECCCCe
Confidence 9997641 1222222221123889998 999999999999999
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|+.|+|||
T Consensus 294 i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999999999997
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-48 Score=346.98 Aligned_cols=292 Identities=21% Similarity=0.309 Sum_probs=253.3
Q ss_pred eeeEEeccccccEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceEEE-eecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 52 GIYAKLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~----g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
.+.+.+++|.+.|++++|+|+ +.+|++|+.|++|+|||+..++.... .+.+|...|.+++|+| ++.++++++.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~~l~s~s~ 100 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSL 100 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSSEEEEEET
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCCEEEEEeC
Confidence 344677899999999999985 57999999999999999987764322 3479999999999999 9999999999
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
|++|++||+.+++.... +..|...+.+++|+|++ ..+++++.|+.|++||+++++....+.. +...+
T Consensus 101 D~~i~lWd~~~~~~~~~--~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~----------~~~~v 167 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKS--IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDT----------RGKFI 167 (321)
T ss_dssp TSEEEEEETTTTEEEEE--EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEEC----------SSSCE
T ss_pred CCcEEEEECCCCCEEEE--EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecC----------CCceE
Confidence 99999999988776554 67788889999999999 5789999999999999999887666543 34468
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~ 285 (471)
.+++|+|+ +.+|++|+.||.|++||+++++.. .....|...|.+++|+|++++|++++ ++.|+
T Consensus 168 ~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~---------------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 168 LSIAYSPD-GKYLASGAIDGIINIFDIATGKLL---------------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp EEEEECTT-SSEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred EEEEECCC-CCEEEEEcCCCeEEEEECCCCcEE---------------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 99999999 789999999999999999887632 23456778899999999999999998 56899
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
+||++.+ .....+.+|... |.+++| +|++++|++|+.|+
T Consensus 232 iwd~~~~--------------------------------------~~~~~~~~h~~~--v~~~~~-sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 232 IYDVQHA--------------------------------------NLAGTLSGHASW--VLNVAF-CPDDTHFVSSSSDK 270 (321)
T ss_dssp EEETTTC--------------------------------------CEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTS
T ss_pred EEECCCc--------------------------------------ceeEEEcCCCCc--eEEEEE-CCCCCEEEEEeCCC
Confidence 9999763 345677788876 999999 99999999999999
Q ss_pred eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
.|++||+.+++++..+.+|.+.|.+++|+|++++|++++.||.|++||..
T Consensus 271 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 271 SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999964
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-47 Score=341.96 Aligned_cols=294 Identities=17% Similarity=0.262 Sum_probs=252.7
Q ss_pred eeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
+++.+++.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+ ..|..+|.+++|+| ++++|++++.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFRI 79 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeC--CCCEEEEECCCCEE
Confidence 4556889999999999999999999999999999999999999988777 78999999999999 99999999999999
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc-eeeeecccCCcCcceeeeeeEEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
++||+.+++.+.. +.+|...|.+++|+|++ .++++++.|+.|++||++++... ..+.. |...|.++
T Consensus 80 ~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~----------h~~~v~~v 146 (304)
T 2ynn_A 80 RVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMCV 146 (304)
T ss_dssp EEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECC----------CCSCEEEE
T ss_pred EEEECCCCcEEEE--EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcc----------cCCcEEEE
Confidence 9999988877654 88999999999999999 57899999999999999887433 23322 55679999
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC--CCCeEEEee-CCcEEE
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIYL 286 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~~~i~i 286 (471)
+|+|+++.+|++|+.|+.|++||++.... ......++...+..+.|+| ++.+|++++ ++.|++
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSC--------------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 99996678999999999999999976542 1223345567788999987 678999888 668999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCe
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~ 366 (471)
||++++ ..+..+.+|... +.+++| +|++++|++|+.||.
T Consensus 213 Wd~~~~--------------------------------------~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 213 WDYQTK--------------------------------------SCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDGT 251 (304)
T ss_dssp EETTTT--------------------------------------EEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSC
T ss_pred EeCCCC--------------------------------------ccceeeCCCCCC--EEEEEE-CCCCCEEEEEcCCCe
Confidence 999873 456788899887 899998 999999999999999
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCC--EEEEeecCCcEEEecCCC
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNA 416 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~ 416 (471)
|++||+.+++.+..+..|...+.+++|+|++. ++++++ |..+.+|++..
T Consensus 252 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp EEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred EEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 99999999999999999999999999999886 577776 45577887765
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.3e-49 Score=361.17 Aligned_cols=312 Identities=18% Similarity=0.283 Sum_probs=257.1
Q ss_pred eeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
+...+.+++|.+.|++++|+|++++|++|+.|++|+|||+.+++....+ ..|...|.+++|+| ++++|++++.|+.+
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~--~g~~las~~~d~~v 132 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP--NGQSVACGGLDSAC 132 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECT--TSSEEEECCSSSCC
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCcE
Confidence 3456889999999999999999999999999999999999999987777 78999999999999 99999999999999
Q ss_pred EEEeccccC-----cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 131 RHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 131 ~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
++|++.+.. ......+.+|.+.+.++.|.|+++..+++++.|+.|++||+++++....+...... + |...
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~---~--h~~~ 207 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS---G--HTAD 207 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS---S--CCSC
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC---C--CccC
Confidence 999986532 12223477899999999999987677999999999999999999877665322111 1 5568
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcE
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i 284 (471)
+.+++|+|.++.+|++|+.|+.|++||++... .......+|...|.+++|+|++++|++++ |++|
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITS--------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTC--------------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCC--------------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 99999988658899999999999999998532 12344567889999999999999999998 6689
Q ss_pred EEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC
Q 012064 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d 364 (471)
++||++++.....+...+ .....+.. .+.+++| +|+|++|++|+.|
T Consensus 274 ~lwd~~~~~~~~~~~~~~-------------------------------~~~~~~~~--~v~~~~~-s~~g~~l~~g~~d 319 (380)
T 3iz6_a 274 RLFDMRTGHQLQVYNREP-------------------------------DRNDNELP--IVTSVAF-SISGRLLFAGYSN 319 (380)
T ss_dssp EEEETTTTEEEEEECCCC-------------------------------SSSCCSSC--SCSEEEE-CSSSSEEEEECTT
T ss_pred EEEECCCCcEEEEecccc-------------------------------cccccccC--ceEEEEE-CCCCCEEEEEECC
Confidence 999998753221110000 00001111 2788998 9999999999999
Q ss_pred CeEEEEEccCCeeeEEe----cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 365 GRIFIWKKKGGELIRVI----EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 365 g~v~iwd~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
|.|++||+..++.+..+ .+|.+.|.+++|+|++++|++|+.|++|+||++...+
T Consensus 320 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999998888777 6899999999999999999999999999999998654
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.9e-47 Score=344.99 Aligned_cols=294 Identities=15% Similarity=0.244 Sum_probs=252.8
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
+..+.+++|.+.|++++|+|++++|++|+.||+|++||..+++....+ ..|...|.+++|+| ++.++++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAP--SGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECT--TSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCCEE
Confidence 566889999999999999999999999999999999999998887776 67889999999999 999999999999999
Q ss_pred EEeccccC----cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 132 HAQILERG----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 132 iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
+|++.... ......+..|...|.+++|+|++ ..+++++.|++|++||+++++....+.. |...+.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~----------h~~~v~ 200 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHG----------HGADVL 200 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcC----------CCCCeE
Confidence 99986432 12234477899999999999998 5789999999999999999988777754 555789
Q ss_pred EEEEcCC-CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEE
Q 012064 208 AIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (471)
Q Consensus 208 ~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~ 285 (471)
+++|+|+ ++.+|++|+.||.|++||+++++. ......|...|.+++|+|++.+|++++ |+.++
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---------------VQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 9999885 257999999999999999988653 223456788999999999999999998 66899
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
+||++.+. ....+..+.....+.+++| +|+|++|++|+.|+
T Consensus 266 lwd~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~-s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 266 LYDLRADR--------------------------------------EVAIYSKESIIFGASSVDF-SLSGRLLFAGYNDY 306 (354)
T ss_dssp EEETTTTE--------------------------------------EEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTS
T ss_pred EEECCCCc--------------------------------------EEEEEcCCCcccceeEEEE-eCCCCEEEEEECCC
Confidence 99997631 1222322222223788998 99999999999999
Q ss_pred eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|++|+
T Consensus 307 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 307 TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999999999999996
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-47 Score=370.76 Aligned_cols=310 Identities=22% Similarity=0.402 Sum_probs=267.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.++|+|+++++++++.|++|++|+.+ ++.. +.+.+|.+.|.+++|+|++++|++++.|
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~t~~~d 324 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRN-GQLL---------------------QTLTGHSSSVWGVAFSPDGQTIASASDD 324 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT-SCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCC-CcEE---------------------EEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence 46789999999999999999999976 5544 5788999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
+.|++||.... .+..+ .+|...+.+++|+| +++++++++.||.+++|+. +++... .+..|...|.+++|+|++
T Consensus 325 ~~i~~w~~~~~-~~~~~-~~~~~~v~~~~~s~--~g~~l~~~~~dg~v~~~~~-~~~~~~--~~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 325 KTVKLWNRNGQ-HLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQ--TLTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp SCEEEEETTSC-EEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEET-TCCEEE--EEECCSSCEEEEEECTTS
T ss_pred CeEEEEeCCCC-eeEEE-eCCCCCEEEEEECC--CCCEEEEEeCCCEEEEEcC-CCCEEE--EecCCCCCeEEEEECCCC
Confidence 99999997654 44555 78999999999999 9999999999999999995 334333 377899999999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
+.+++++.|+.|++||. +++....+.. +...|.+++|+|+ +.+|++++.|+.|++||.....
T Consensus 398 -~~l~~~~~d~~v~~~~~-~~~~~~~~~~----------~~~~v~~~~~s~d-~~~l~~~~~d~~v~~w~~~~~~----- 459 (577)
T 2ymu_A 398 -QTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVWGVAFSPD-DQTIASASDDKTVKLWNRNGQL----- 459 (577)
T ss_dssp -SCEEEEETTSEEEEECT-TCCEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTSCE-----
T ss_pred -CEEEEEeCCCEEEEEeC-CCCEEEEecC----------CCCCeEEEEECCC-CCEEEEEcCCCEEEEEECCCCE-----
Confidence 57899999999999995 4455444432 5567999999998 6899999999999999975432
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
......|...|.+++|+|++++|++++ ++.|++||...
T Consensus 460 -----------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------------------------------ 498 (577)
T 2ymu_A 460 -----------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------------------------------ 498 (577)
T ss_dssp -----------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS------------------------------
T ss_pred -----------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC------------------------------
Confidence 223456788899999999999999988 56899999642
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (471)
.....+.+|... |.+++| +|+|++|++++.||.|++||. +++.+..+.+|.+.|++++|+||+++|+
T Consensus 499 ---------~~~~~~~~h~~~--v~~l~~-s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 499 ---------QLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp ---------CEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred ---------CEEEEEeCCCCC--EEEEEE-cCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 345678888876 999999 999999999999999999996 7889999999999999999999999999
Q ss_pred EeecCCcEEEec
Q 012064 402 SSGIESDIKILT 413 (471)
Q Consensus 402 s~~~dg~i~iw~ 413 (471)
|++.|++|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999999999997
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-47 Score=349.74 Aligned_cols=292 Identities=15% Similarity=0.175 Sum_probs=233.5
Q ss_pred eccccccEEEEEEcCCCCEEEEecC------CCeEEEEECCCCceEEEe---ecCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~------d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
..+|.+.|++++|||||++||+|+. |+.|++|+..++.....+ ..+|...|.+++|+| ++.+ ++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~~-l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKGI-LVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTEE-EEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCCE-EEEECC
Confidence 3479999999999999999999997 788999998776542221 246888999999999 8764 567789
Q ss_pred CeEEEEeccccCccee--eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 128 GQVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
|+|++||+.+++.... ....+|...|.+++|+|++ +.|++++.|+.|++||+++++....+.. +...
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~----------h~~~ 183 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNA----------HSSE 183 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSC
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCC
Confidence 9999999988765432 2345789999999999999 5789999999999999999988777654 5568
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEee-CCc
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEF 283 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~ 283 (471)
|.+++|+|++..++++++.||.|++||+++++.... .....+...+.+++|+|++ .+|++++ ++.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-------------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-------------IDFCASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-------------CCCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeee-------------eeeccccccccchhhhhcccceEEEeecccc
Confidence 999999999667899999999999999988763322 1123456779999999975 5777777 668
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-cEEEEee
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGS 362 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~ 362 (471)
|++||+++ ......+.+|... |.+++| +|++ ++|++|+
T Consensus 251 i~~wd~~~--------------------------------------~~~~~~~~~~~~~--v~~l~~-sp~~~~~lasgs 289 (357)
T 4g56_B 251 VSLVNIKN--------------------------------------PDSAQTSAVHSQN--ITGLAY-SYHSSPFLASIS 289 (357)
T ss_dssp EEEEESSC--------------------------------------GGGCEEECCCSSC--EEEEEE-CSSSSCCEEEEE
T ss_pred eeEEECCC--------------------------------------CcEeEEEecccee--EEEEEE-cCCCCCEEEEEe
Confidence 99999977 3456778888876 999999 9987 6899999
Q ss_pred CCCeEEEEEccCCeeeEEecCCCcceEEEEEcC-CCCEEEEeecCCcEEEecCCCC
Q 012064 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
.||+|+|||+++++.+..+ +|.+.|++++|+| ++++|+|++.||+|++|++...
T Consensus 290 ~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 290 EDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999887655 7999999999998 7899999999999999999764
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-47 Score=370.57 Aligned_cols=332 Identities=22% Similarity=0.393 Sum_probs=283.2
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.++|+|++++|++++.|+.|++||.+ ++.+ ..+.+|...|.+++|+|++++|++++.|
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~---------------------~~~~~~~~~v~~v~~~~d~~~l~~~~~d 283 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNRN-GQLL---------------------QTLTGHSSSVNGVAFRPDGQTIASASDD 283 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTT-SCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCC-CCEE---------------------EEEecCCCCEEEEEEcCCCCEEEEEeCC
Confidence 46789999999999999999999976 5544 5788999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
+.|++||.. ++....+ .+|...|.+++|+| +++++++++.|+.|++||..... . ..+.+|...+.+++|+|++
T Consensus 284 ~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~~~d~~i~~w~~~~~~-~--~~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 284 KTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQH-L--QTLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp SCEEEEETT-SCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSCE-E--EEECCCSSCEEEEEECTTS
T ss_pred CEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCe-e--EEEeCCCCCEEEEEECCCC
Confidence 999999964 5665555 79999999999999 99999999999999999975433 2 3377899999999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
..+++++.|+.+++||. +++....+.. +...|.+++|+|+ +.+|++++.|+.|++||.....
T Consensus 357 -~~l~~~~~dg~v~~~~~-~~~~~~~~~~----------~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~~~~~----- 418 (577)
T 2ymu_A 357 -QTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQL----- 418 (577)
T ss_dssp -SEEEEEETTSEEEEEET-TCCEEEEEEC----------CSSCEEEEEECTT-SSCEEEEETTSEEEEECTTCCE-----
T ss_pred -CEEEEEeCCCEEEEEcC-CCCEEEEecC----------CCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCE-----
Confidence 57899999999999995 4455544442 5567999999999 6899999999999999964321
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
......|...|.+++|+|++++|++++ ++.+++||...
T Consensus 419 -----------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------------------------------ 457 (577)
T 2ymu_A 419 -----------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------------------------------ 457 (577)
T ss_dssp -----------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS------------------------------
T ss_pred -----------EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC------------------------------
Confidence 223456788899999999999999988 56899999643
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (471)
.....+.+|... +.+++| +|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 458 ---------~~~~~~~~~~~~--v~~~~~-spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 458 ---------QLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp ---------CEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred ---------CEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence 345677788876 999999 999999999999999999995 7888999999999999999999999999
Q ss_pred EeecCCcEEEecCCCCCCcccCcchheeehhhHH
Q 012064 402 SSGIESDIKILTPNAADRATLPTNIEQAMMMTMT 435 (471)
Q Consensus 402 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
+++.||.|++||........+.+|...+..++|.
T Consensus 525 s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 525 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 558 (577)
T ss_dssp EEETTSEEEEECTTSCEEEEEECCSSCEEEEEEC
T ss_pred EEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEc
Confidence 9999999999998665557777888877776664
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.1e-47 Score=343.17 Aligned_cols=320 Identities=16% Similarity=0.234 Sum_probs=250.3
Q ss_pred eeeeEEeccccc-cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceE--EEeecCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 51 LGIYAKLDKHRG-CVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 51 ~~~~~~l~~h~~-~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
+.+.+++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++... ..+..+|...|.+++|+| ++++|++++.|
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEECC
Confidence 456688999988 9999999999999999999999999999887643 233468999999999999 99999999999
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
+++++|++..+.......+.+|...|.+++|+|++ ++|++++.|+.|++||++++........... +...|.
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------h~~~v~ 154 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNS-------HTQDVK 154 (345)
T ss_dssp SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECC-------CCSCEE
T ss_pred CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecC-------cCCCeE
Confidence 99999999776554445588999999999999999 5899999999999999988754433222111 556799
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEE
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i 286 (471)
+++|+|+ +.+|++++.|+.|++||.+..+.. ......+|...|.+++|+|+|++|++++ |++|++
T Consensus 155 ~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~i 220 (345)
T 3fm0_A 155 HVVWHPS-QELLASASYDDTVKLYREEEDDWV-------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220 (345)
T ss_dssp EEEECSS-SSCEEEEETTSCEEEEEEETTEEE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999998 689999999999999999865421 1123456788999999999999999998 668999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
|+............. .......++..+.+ |... |.+++| +|++..|++++.|+
T Consensus 221 W~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~h~~~--v~~v~~-~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 221 WRQYLPGNEQGVACS-----------------------GSDPSWKCICTLSGFHSRT--IYDIAW-CQLTGALATACGDD 274 (345)
T ss_dssp EEEECTTCTTCCCCC--------------------------CEEEEEEEECSSCSSC--EEEEEE-CTTTCCEEEEETTS
T ss_pred eccccCCCCccceee-----------------------ccCCccceeEEecCCCCCc--EEEEEE-ecCCCEEEEEeCCC
Confidence 997543221111100 00001122334444 5554 899999 99999999999999
Q ss_pred eEEEEEccCCe---------eeEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEEecCCCCCCc
Q 012064 366 RIFIWKKKGGE---------LIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 366 ~v~iwd~~~~~---------~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
.|++|+...+. ......+|...|++++|+|++. +||+++.||+|++|++.+++..
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 99999986542 1123468999999999999985 9999999999999999887653
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.4e-46 Score=334.87 Aligned_cols=297 Identities=21% Similarity=0.345 Sum_probs=254.6
Q ss_pred eeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
...+...+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+ .+|...|.+++|+| ++++|++++.|+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~ 88 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSNLLVSASDDKT 88 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcC--CCCEEEEECCCCE
Confidence 34566789999999999999999999999999999999999999887776 78999999999999 9999999999999
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
|++||+.+++.... +.+|...|.+++|+|++ .++++++.|+.|++||+++++....+.. +...+.++
T Consensus 89 i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~v~~~ 155 (312)
T 4ery_A 89 LKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPA----------HSDPVSAV 155 (312)
T ss_dssp EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEE
T ss_pred EEEEECCCCcEEEE--EcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcEEEE
Confidence 99999988876654 78899999999999998 5789999999999999999887766543 45579999
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEe
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d 288 (471)
+|+|+ +.++++++.||.|++||+++.+.. ......+...+..++|+|++++|++++ ++.|++||
T Consensus 156 ~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 156 HFNRD-GSLIVSSSYDGLCRIWDTASGQCL--------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp EECTT-SSEEEEEETTSCEEEEETTTCCEE--------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEcCC-CCEEEEEeCCCcEEEEECCCCcee--------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99998 689999999999999999876532 122334566799999999999999888 66899999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
+.++ .....+.+|..........+..+++++|++|+.||.|+
T Consensus 221 ~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 221 YSKG--------------------------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp TTTT--------------------------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred CCCC--------------------------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 9764 33455556654322233344357899999999999999
Q ss_pred EEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEee--cCCcEEEecCC
Q 012064 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 415 (471)
+||+.+++.+..+.+|.+.|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 263 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999999999999999987 69999999865
No 14
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-47 Score=357.68 Aligned_cols=335 Identities=14% Similarity=0.155 Sum_probs=273.5
Q ss_pred CCCCCCCCCc-EEEEe----------cCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEc
Q 012064 2 DDASNNNNNK-RARTS----------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN 70 (471)
Q Consensus 2 ~~~~~~~~~~-~l~~~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s 70 (471)
..++|+|+++ ++++| +.||.|++||+++++... .... ..|...|.+++|+
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~------------------~~~~-~~~~~~v~~~~~s 76 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK------------------PIAS-LQVDSKFNDLDWS 76 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS------------------CSCC-CCCSSCEEEEEEC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc------------------EEEE-EecCCceEEEEEC
Confidence 4688999987 89999 899999999999776321 1122 2588999999999
Q ss_pred CCCCEEEEecCCCeEEEEECCC----CceEEEeecCCCcceeEEEEecCCC-CeEEEEEeCCCeEEEEeccccC------
Q 012064 71 TDGDILISGSDDRRVILWDWKT----ERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERG------ 139 (471)
Q Consensus 71 ~~g~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~------ 139 (471)
|++++|++|+.||.|++||+.+ .+.+..+ .+|...|.+++|+| + +++|++++.||.|++||+.+.+
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNA--KQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECS--SSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcC--CCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 9999999999999999999987 3354555 78999999999999 8 8999999999999999998876
Q ss_pred ccee-eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 140 GVET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 140 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
.... .....|...|.+++|+|++..++++++.|+.|++||+++++....+...... . .+...+.+++|+|++..+
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--S--GIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--S--CCCCCEEEEEECSSCTTE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc--c--ccCCceEEEEECCCCCCE
Confidence 2221 1245788999999999995578999999999999999998877666542110 0 025679999999996689
Q ss_pred EEEEeCCC---eEEEEEcCCCccCCCCCCCCCCCcCCCCcccC-CCccceEEEEEcC-CCCeEEEee-CCcEEEEecCCC
Q 012064 219 FAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 219 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
+++++.|+ .|++||+++.+. +..... .|...|.+++|+| ++++|++++ ++.|++||+.++
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANT--------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTS--------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred EEEEECCCCCceEEEEeCCCCCC--------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 99999998 999999987531 123334 6788999999999 899999888 678999998773
Q ss_pred CCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-cEEEEeeCCCeEEEEE
Q 012064 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWK 371 (471)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~~dg~v~iwd 371 (471)
..+..+.+|... +.+++| +|++ ++|++++.||.|++||
T Consensus 296 --------------------------------------~~~~~~~~~~~~--v~~~~~-s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 296 --------------------------------------EQLSQFPARGNW--CFKTKF-APEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp --------------------------------------CEEEEEECSSSC--CCCEEE-CTTCTTEEEECCSSSEEEEEE
T ss_pred --------------------------------------ccceeecCCCCc--eEEEEE-CCCCCCEEEEEecCCcEEEEE
Confidence 345677788776 899999 9999 8999999999999999
Q ss_pred ccCCeeeEEec-----------------------------------CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 372 KKGGELIRVIE-----------------------------------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 372 ~~~~~~~~~~~-----------------------------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+.+++...... .|..++.+++|+|+|++|++++.|+.|+||++.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 335 LQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 98765432211 1567788999999999999999999999999986
Q ss_pred C
Q 012064 417 A 417 (471)
Q Consensus 417 ~ 417 (471)
.
T Consensus 415 ~ 415 (416)
T 2pm9_A 415 S 415 (416)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.5e-47 Score=343.06 Aligned_cols=296 Identities=16% Similarity=0.231 Sum_probs=232.9
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..+.|+|+|++|++++ |+++|+||......... ..+. ..........|...|.+++|+|++ .|++|+.
T Consensus 34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~ 101 (344)
T 4gqb_B 34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDP-----CAAP-----NEGFCSAGVQTEAGVADLTWVGER-GILVASD 101 (344)
T ss_dssp EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSG-----GGTT-----CGGGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred EEEEECCCCCEEEEEe-CCceEEeeceeeeeccc-----cccC-----CcceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence 4578999999999887 77888887542111000 0000 000112223467889999999986 6789999
Q ss_pred CCeEEEEECCCCceEEEe---ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 82 DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
||+|+|||+.+++.+... ..+|.+.|++++|+| ++++|++++.|++|++||+.+++.+.. +.+|...|.+++|
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSS--YRAHAAQVTCVAA 177 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEE
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCcCCceEEEEe
Confidence 999999999988754332 358999999999999 999999999999999999988776654 8899999999999
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
+|++..++++++.|+.|++||+++++....+.... +...+.+++|+|+++++|++|+.||.|++||+++++
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~- 248 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS- 248 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred cCCCCCceeeeccccccccccccccceeeeeecce--------eeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-
Confidence 99997789999999999999999998776654321 344688999999877889999999999999987643
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
T Consensus 249 -------------------------------------------------------------------------------- 248 (344)
T 4gqb_B 249 -------------------------------------------------------------------------------- 248 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-cEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCC
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 397 (471)
.+..+.+|... |.+++| +|++ ++|++|+.|++|+|||+.++++. .+.+|.+.|++++|+|++
T Consensus 249 -------------~~~~~~~h~~~--v~~v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 249 -------------CVLSSAVHSQC--VTGLVF-SPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLN 311 (344)
T ss_dssp -------------CCEEEECCSSC--EEEEEE-CSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSS
T ss_pred -------------EEEEEcCCCCC--EEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCC
Confidence 12344556555 889998 9988 58999999999999999888765 578999999999999998
Q ss_pred C-EEEEeecCCcEEEecCCCCCC
Q 012064 398 T-VLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 398 ~-~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+ +|++++.|++|++|++.+...
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC---
T ss_pred CeEEEEEcCCCeEEEEECCCCCC
Confidence 7 677999999999999987544
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-46 Score=349.61 Aligned_cols=277 Identities=19% Similarity=0.316 Sum_probs=246.0
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.+.|+|+++++++|+.||+|+|||+++++.. +.+.+|.+.|.+++|+|++++|++|+.|
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------~~l~~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTLKGHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------EEEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence 5678999999999999999999999988876 6889999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
++|++||+.+++++..+ .+|...|.+++|+| ++++|++++.|++|++||+.++..... +.+|...|.++.++|++
T Consensus 172 ~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTM-HGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDG 246 (410)
T ss_dssp SCCCEEETTSSCEEECC-CCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTS
T ss_pred CeEEEEeCCCCceeEEE-cCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCC
Confidence 99999999998887776 79999999999999 999999999999999999988876654 78899999999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC-------------------CceEEEEe
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-------------------ANLFAVAG 223 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~l~~~~ 223 (471)
.++++++.|+.|++||+++++....+.. +...|.+++|+|++ +.+|++|+
T Consensus 247 -~~l~s~s~D~~v~vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 247 -TLIASCSNDQTVRVWVVATKECKAELRE----------HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp -SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred -CEEEEEcCCCeEEEEECCCCceeeEecC----------CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 5899999999999999999887766543 55579999999962 46899999
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCC
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~ 302 (471)
.|+.|++||+++++.. ....+|...|.+++|+|++++|++++ |+.|++||+.++
T Consensus 316 ~D~~i~iwd~~~~~~~---------------~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------- 370 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCL---------------MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---------- 370 (410)
T ss_dssp TTSEEEEEETTTTEEE---------------EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS----------
T ss_pred CCCeEEEEECCCCceE---------------EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------
Confidence 9999999999887532 23456788999999999999999988 568999998763
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
.....+.+|... |.+++| +|++.+|++|+.||.|++|++
T Consensus 371 ----------------------------~~~~~~~~h~~~--v~~l~~-~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 371 ----------------------------RCMKTLNAHEHF--VTSLDF-HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----------------------------CCCEEEECCSSC--EEEEEE-CSSSSCEEEEETTSEEEEEC-
T ss_pred ----------------------------ceEEEEcCCCCc--EEEEEE-cCCCCEEEEEeCCCcEEEEeC
Confidence 456778888876 999999 999999999999999999986
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-45 Score=346.29 Aligned_cols=327 Identities=9% Similarity=0.086 Sum_probs=266.1
Q ss_pred CCCCCCCCCc-EEEEecCCCeEEEEEc----ccCccccccccceecccccceeeeeeeE------EeccccccEEEEEEc
Q 012064 2 DDASNNNNNK-RARTSVDKALVDVWLR----ELGQLSTRNFALRRRASEDLVLRLGIYA------KLDKHRGCVNTVSFN 70 (471)
Q Consensus 2 ~~~~~~~~~~-~l~~~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~h~~~V~~~~~s 70 (471)
.+++|+|+++ +||+|+.||.|++|++ ++++...... ....+.. ...+|.+.|++++|+
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-----------IIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-----------EEEEEECCCCCC------CBCEEEEEEC
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-----------ccccccccccccccccCCCCceEEEEEc
Confidence 4678999999 9999999999999999 8777321000 0001111 123378899999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee
Q 012064 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 71 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
|++++|++|+.||.|++|| .+++.+..+ ..|...|.+++|+| ++++|++++.||.|++||+.+++.... +..+.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~ 191 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQH--FELKE 191 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEE--ECCC-
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEE--eeccc
Confidence 9999999999999999999 667776766 78999999999999 999999999999999999987766544 55555
Q ss_pred ee---------------EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC
Q 012064 151 GR---------------AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (471)
Q Consensus 151 ~~---------------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (471)
.. +.+++|+|++ .+++++.++.|++||+++++....+.. +...+.+++|+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~- 258 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIG----------HHGPISVLEFNDT- 258 (425)
T ss_dssp --------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECC----------CSSCEEEEEEETT-
T ss_pred cCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeecc----------CCCceEEEEECCC-
Confidence 55 8899999986 479999999999999999877766643 5557999999998
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~ 294 (471)
+.+|++++.||.|++||+++.+. ......|...|.+++|+|++ ++++++ ++.+++||+.++
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-- 320 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNGNS---------------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-- 320 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSBSC---------------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT--
T ss_pred CCEEEEEcCCCEEEEEECCCCcc---------------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC--
Confidence 67999999999999999987652 23344567889999999999 777766 779999999763
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
.....+..|... +.+++| +|++++|++++.||.|++||+.+
T Consensus 321 ------------------------------------~~~~~~~~~~~~--i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 321 ------------------------------------TLLALSIVDGVP--IFAGRI-SQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp ------------------------------------EEEEEEECTTCC--EEEEEE-CTTSSEEEEEETTSCEEEEECHH
T ss_pred ------------------------------------cEeEecccCCcc--EEEEEE-cCCCCEEEEEECCCeEEEEECCC
Confidence 345566677665 899998 99999999999999999999998
Q ss_pred Ce--------------------eeEEecCCCc--ceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 375 GE--------------------LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 375 ~~--------------------~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
++ .+..+.+|.. .|.+++|+|++++|++++.||.|++|+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 362 LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 88 8899999976 99999999999999999999999999986
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.8e-45 Score=328.39 Aligned_cols=293 Identities=15% Similarity=0.220 Sum_probs=243.0
Q ss_pred eeeeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCC-----ceEEEeecCCCcceeEEEEecCCCCeEEEE
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVT 123 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 123 (471)
.+.+..++.+|.++|++++|+|++ ++|++|+.|++|++|++... .++..+ .+|...|.+++|+| ++++|++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~--dg~~l~s 82 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTA--DGAYALS 82 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECC--CCCEEEE
Confidence 455668899999999999999965 89999999999999998643 234444 79999999999999 9999999
Q ss_pred EeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceee
Q 012064 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (471)
++.|++|++||+.+++.... +.+|...|.+++|+|++ .++++++.|+.|++||++.. ....+.. +.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~----------h~ 148 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLG----------HN 148 (319)
T ss_dssp EETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECC----------CS
T ss_pred EeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEec----------cC
Confidence 99999999999988876654 88999999999999998 58899999999999999754 3333321 55
Q ss_pred eeeEEEEEcCCC-----CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE
Q 012064 204 VNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (471)
Q Consensus 204 ~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (471)
..+.+++|+|.. +..+++++.|+.|++||+++.+. .....+|...|.+++|+|++++|++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---------------EADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---------------EEEECCCCSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---------------heeecCCCCcEEEEEEcCCCCEEEE
Confidence 578999999852 45899999999999999987653 2234567889999999999999999
Q ss_pred ee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcE
Q 012064 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (471)
Q Consensus 279 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~ 357 (471)
++ ++.|++||+.++ ..+..+..+. .+.+++| +|++.+
T Consensus 214 ~~~dg~i~iwd~~~~--------------------------------------~~~~~~~~~~---~v~~~~~-sp~~~~ 251 (319)
T 3frx_A 214 AGKDGEIMLWNLAAK--------------------------------------KAMYTLSAQD---EVFSLAF-SPNRYW 251 (319)
T ss_dssp EETTCEEEEEETTTT--------------------------------------EEEEEEECCS---CEEEEEE-CSSSSE
T ss_pred EeCCCeEEEEECCCC--------------------------------------cEEEEecCCC---cEEEEEE-cCCCCE
Confidence 88 668999999763 3344555443 2889999 999999
Q ss_pred EEEeeCCCeEEEEEccCCeeeEEecC--------CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 358 VVSGSDCGRIFIWKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 358 l~~g~~dg~v~iwd~~~~~~~~~~~~--------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
|++++. +.+++|++..+..+..+.. |...+.+++|+|||++|++++.||.|++|++.++
T Consensus 252 la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 998875 4599999988877766543 4567899999999999999999999999998764
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-45 Score=338.60 Aligned_cols=309 Identities=20% Similarity=0.278 Sum_probs=247.2
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCC------------------cceeEEEEec
Q 012064 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN------------------DNVFQAKIMP 114 (471)
Q Consensus 53 ~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~v~~~~~~~ 114 (471)
+.+.+ +|.+.|.+++|+|||++||+|+ ++.+++|++.+++.+..+ ..|. ..|.+++|+|
T Consensus 57 ~~~~~-~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECT
T ss_pred eEEec-CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECC
Confidence 33444 6999999999999999999987 678999999999887766 3332 2489999999
Q ss_pred CCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeeccc
Q 012064 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (471)
Q Consensus 115 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (471)
++++|++++.|+.|++||+.+++.... +.+|...|.+++|+|++ ..+++++.|+.|++||+++++....+.
T Consensus 134 --dg~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~---- 204 (393)
T 1erj_A 134 --DGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS---- 204 (393)
T ss_dssp --TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred --CCCEEEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE----
Confidence 999999999999999999987765544 88899999999999999 578999999999999999988766654
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (471)
+...+.+++|+|.++.++++|+.|+.|++||+++++....... ......+|...|.+++|+|+++
T Consensus 205 -------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 205 -------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS--------ENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp -------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSS
T ss_pred -------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc--------cccCCCCCCCCEEEEEECCCCC
Confidence 3346899999995488999999999999999988754322110 0112245788999999999999
Q ss_pred eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC
Q 012064 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (471)
Q Consensus 275 ~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (471)
+|++++ ++.|++||+........... .........+.+|... |.+++| +|
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~--------------------------~~~~~~~~~~~~h~~~--v~~~~~-~~ 320 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKT--------------------------PNSGTCEVTYIGHKDF--VLSVAT-TQ 320 (393)
T ss_dssp EEEEEETTSEEEEEEC-----------------------------------------CEEEEEECCSSC--EEEEEE-CG
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccC--------------------------CCCCcceEEEecccCc--EEEEEE-CC
Confidence 999998 66899999976432211000 0002234567788876 899998 99
Q ss_pred CCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcC------CCCEEEEeecCCcEEEecCCCC
Q 012064 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 354 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++++|++++.||+|+||++...
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999999999999999999999999999886 6889999999999999998653
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-45 Score=329.32 Aligned_cols=278 Identities=19% Similarity=0.286 Sum_probs=240.3
Q ss_pred CCCCCC----CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE
Q 012064 3 DASNNN----NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 3 ~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s 78 (471)
+++|+| ++.+|++|+.|++|+||++.+++.. ....+.+|...|.+++|+|++.++++
T Consensus 37 ~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-------------------~~~~l~gh~~~v~~~~~~~~~~~l~s 97 (321)
T 3ow8_A 37 SVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-------------------LQWSLEGHQLGVVSVDISHTLPIAAS 97 (321)
T ss_dssp EEEEC-------CEEEEEETTSCEEEEEEETTEEE-------------------EEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-------------------eeeeeccCCCCEEEEEECCCCCEEEE
Confidence 345655 4678999999999999999855432 33578999999999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
++.|++|++||+.+++.+..+ ..|...+.+++|+| ++++|++++.||.+++|++.+++.... +..|...+.+++|
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYS--LDTRGKFILSIAY 172 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEE--EECSSSCEEEEEE
T ss_pred EeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCCceEEEEEE
Confidence 999999999999999988777 67888999999999 999999999999999999988776554 7778889999999
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
+|++ +++++++.|+.|++||+++++....+.. +...|.+++|+|+ +.+|++++.|+.|++||++..+.
T Consensus 173 spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~----------h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 173 SPDG-KYLASGAIDGIINIFDIATGKLLHTLEG----------HAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANL 240 (321)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCE
T ss_pred CCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcc----------cCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcce
Confidence 9999 5789999999999999999987766653 4557999999998 68999999999999999987653
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
.....+|...|.+++|+|++++|++++ |+.|++||+.++
T Consensus 241 ---------------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~------------------------- 280 (321)
T 3ow8_A 241 ---------------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR------------------------- 280 (321)
T ss_dssp ---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------------
T ss_pred ---------------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------------------
Confidence 233456788999999999999999988 668999999773
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
..+..+.+|... |.+++| +|++++|++++.||.|++||.
T Consensus 281 -------------~~~~~~~~h~~~--v~~v~~-s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 281 -------------TCVHTFFDHQDQ--VWGVKY-NGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTCCEEEEEC
T ss_pred -------------EEEEEEcCCCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEeC
Confidence 456777888876 999999 999999999999999999996
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-44 Score=328.65 Aligned_cols=296 Identities=15% Similarity=0.208 Sum_probs=237.6
Q ss_pred eeeeeEEeccccccEEEEEE-----cC-CCCEEEEecCCCeEEEEECCCCc-------eEEEeecCCCcceeEEEEecCC
Q 012064 50 RLGIYAKLDKHRGCVNTVSF-----NT-DGDILISGSDDRRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFT 116 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~-----s~-~g~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~ 116 (471)
.+.....+++|.+.|++++| ++ ++++|++|+.|++|++||+.+++ +...+ .+|...|.+++|+|
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~-- 86 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQ-- 86 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECS--
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECC--
Confidence 45566889999999999999 77 89999999999999999987542 33334 79999999999999
Q ss_pred CCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC
Q 012064 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
++.++++++.|++|++||+.+++.... +.+|...|.+++|+|++ ..+++++.|+.|++||+...... ... ..
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~-~~~--~~-- 158 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF-SSA--EK-- 158 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE-ECC--TT--
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee-eee--cc--
Confidence 999999999999999999988876654 78899999999999999 57899999999999999743221 111 00
Q ss_pred cCcceeeeeeEEEEEcCCC---------CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEE
Q 012064 197 RRNYMTVVNLNAIAIDPRN---------ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (471)
. .+...+.+++|+|++ +.++++++.||.|++||..... ......|...|.++
T Consensus 159 -~--~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 159 -E--NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI----------------RYTFKAHESNVNHL 219 (343)
T ss_dssp -T--SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE----------------EEEEECCSSCEEEE
T ss_pred -c--CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce----------------eEEEcCccccceEE
Confidence 0 155579999999984 1689999999999999953321 22345678899999
Q ss_pred EEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEee
Q 012064 268 AFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK 346 (471)
Q Consensus 268 ~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (471)
+|+|+|++|++++ ++.|++||+.... .....+. +... +.
T Consensus 220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~-------------------------------------~~~~~~~-~~~~--v~ 259 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKKLLIWDILNLT-------------------------------------YPQREFD-AGST--IN 259 (343)
T ss_dssp EECTTSSEEEEEETTCEEEEEESSCCS-------------------------------------SCSEEEE-CSSC--EE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCc-------------------------------------ccceeec-CCCc--EE
Confidence 9999999999998 6689999985421 1122222 2222 88
Q ss_pred eeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeE--Eec-----------CCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIE-----------ADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 347 ~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~--~~~-----------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
+++| +|++++++++ .|+.|++||+.+++... .+. +|...|.+++|+|++++|++|+.||.|++|+
T Consensus 260 ~v~~-sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 260 QIAF-NPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EEEE-CSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred EEEE-CCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 9999 9999988765 47789999998776543 333 6788899999999999999999999999999
Q ss_pred CCCC
Q 012064 414 PNAA 417 (471)
Q Consensus 414 ~~~~ 417 (471)
++++
T Consensus 338 ~~~g 341 (343)
T 2xzm_R 338 FETS 341 (343)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8754
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.8e-45 Score=328.88 Aligned_cols=277 Identities=21% Similarity=0.269 Sum_probs=236.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
++.|+|++++|++|+.||+|++||..+++.+ ..+..|...|.+++|+|++++|++|+.|
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---------------------HAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------EEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCcc---------------------eEeecCCccEEEEEECCCCCEEEEEeCC
Confidence 4678999999999999999999999988766 5778899999999999999999999999
Q ss_pred CeEEEEECCCCc---eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+.|++||+.+++ .......+|.+.|.++.|+| ++. +++++.|+.|++||+.+++.... +.+|...|.+++|+
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~-l~s~s~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~ 193 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQ-IVTSSGDTTCALWDIETGQQTTT--FTGHTGDVMSLSLA 193 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE--TTE-EEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEC
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECC--CCc-EEEEECCCcEEEEECCCCcEEEE--EcCCCCceEEEEEC
Confidence 999999998754 22333478999999999998 765 88999999999999988776544 78899999999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
|++ .++++++.|+.|++||++++.....+.. |...|.+++|+|+ +.+|++|+.||.|++||++..+..
T Consensus 194 ~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~----------h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 194 PDT-RLFVSGACDASAKLWDVREGMCRQTFTG----------HESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp TTS-SEEEEEETTSCEEEEETTTCSEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCC-CEEEEEeCCCcEEEEECCCCeeEEEEcC----------CcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEE
Confidence 998 5889999999999999999887766653 5567999999998 789999999999999999876532
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
... ....+...|.+++|+|+|++|++++ ++.|++||+.++
T Consensus 262 ~~~-------------~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-------------------------- 302 (340)
T 1got_B 262 MTY-------------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-------------------------- 302 (340)
T ss_dssp EEE-------------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------------------------
T ss_pred EEE-------------ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC--------------------------
Confidence 110 0112234699999999999999988 568999998763
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
.....+.+|... |.+++| +|+|++|++|+.||.|+|||
T Consensus 303 ------------~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 ------------DRAGVLAGHDNR--VSCLGV-TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------------CEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSCEEEEC
T ss_pred ------------cEeeEeecCCCc--EEEEEE-cCCCCEEEEEcCCccEEecC
Confidence 345678889887 999999 99999999999999999996
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.6e-45 Score=329.94 Aligned_cols=318 Identities=14% Similarity=0.145 Sum_probs=264.1
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
..++++|+|++++++..++.+.+|....... . ....+|.+.|++++|+|++++|++++
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~h~~~v~~~~~~~~~~~l~~~~- 70 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHAR--------------------Q-INTLNHGEVVCAVTISNPTRHVYTGG- 70 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEE--------------------E-EEEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccc--------------------c-ceeccCCCceEEEEEecCCcEEEEcC-
Confidence 4578999999999998887776665442221 1 23347999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEee----cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 82 DRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
||.|++||+.+++....+. .+|...|.+++|+| ++++|++++.||.|++||+.+++......+..|...+.+++
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 9999999998775322221 27899999999999 99999999999999999998887555556788999999999
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
|+|++ ..+++++.||.|++||+++++....+.. +...+.+++|+|+ +.++++++.||.|++||+++.+
T Consensus 149 ~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 149 ISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE
T ss_pred ECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeec----------ccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCc
Confidence 99998 5789999999999999999887766543 4557999999998 6899999999999999998876
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
.... ..+...+.+++|+|+++++++++ ++.+++||+..+.
T Consensus 217 ~~~~----------------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----------------------- 257 (337)
T 1gxr_A 217 QLQQ----------------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------------------- 257 (337)
T ss_dssp EEEE----------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-----------------------
T ss_pred eEee----------------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-----------------------
Confidence 3211 12456799999999999999888 6689999997631
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCC
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 396 (471)
...+..|... +.+++| +|++++|++++.||.|++||+.+++.+... .|...|.+++|+|+
T Consensus 258 ----------------~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 258 ----------------KYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD 317 (337)
T ss_dssp ----------------EEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred ----------------eEEEcCCccc--eeEEEE-CCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCC
Confidence 2345566665 899999 999999999999999999999998887554 57889999999999
Q ss_pred CCEEEEeecCCcEEEecC
Q 012064 397 STVLASSGIESDIKILTP 414 (471)
Q Consensus 397 ~~~l~s~~~dg~i~iw~~ 414 (471)
+++|++++.||.|++|++
T Consensus 318 ~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCeEEEEEE
Confidence 999999999999999986
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-44 Score=325.41 Aligned_cols=291 Identities=18% Similarity=0.202 Sum_probs=233.8
Q ss_pred CCCCCCC-CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 3 DASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 3 ~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+++++|+ +++|++|+.|++|++|++...... .....+.+++|...|.+++|+|+|++|++|+.
T Consensus 22 ~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 4567775 489999999999999998743321 12345788999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|++|++||+.+++.+..+ .+|...|.+++|+| ++.+|++++.|++|++||+.. +.. ..+.+|...|.++.|.|.
T Consensus 86 D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~--~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRF-VGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCL--ATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEE--EEECCCSSCEEEEEECCC
T ss_pred CCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeE--EEEeccCCcEEEEEEccC
Confidence 999999999999988777 79999999999999 999999999999999999854 333 347789999999999985
Q ss_pred CC-----cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 162 SP-----HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 162 ~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
.. ..+++++.|+.|++||+++.+....+.. |...|.+++|+|+ +.+|++++.||.|++||+++.
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG----------HNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECC----------CCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTT
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecC----------CCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Confidence 32 3789999999999999998876655543 5668999999998 789999999999999999987
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
+.... .. +...|.+++|+|++.+|+++.++.+++|+++.......+.
T Consensus 229 ~~~~~---------------~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~----------------- 275 (319)
T 3frx_A 229 KAMYT---------------LS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR----------------- 275 (319)
T ss_dssp EEEEE---------------EE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEEC-----------------
T ss_pred cEEEE---------------ec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccC-----------------
Confidence 63221 11 2457999999999999999999999999987632111100
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
.........+... +.+++| +|||++|++|+.||.|++||+.++
T Consensus 276 -------------~~~~~~~~~~~~~--v~~~~~-spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 276 -------------PEFAGYSKAAEPH--AVSLAW-SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -------------CCCTTCCGGGCCC--EEEEEE-CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred -------------ccccccccCcCcc--eeEEEE-CCCCCEEEEeecCceEEEEEEeec
Confidence 0000011122333 789999 999999999999999999998764
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=326.07 Aligned_cols=316 Identities=18% Similarity=0.244 Sum_probs=235.5
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.++|+|++++||+|+.||+|+|||.+++.... ......+|.+.|.+++|+|+|++|++|+.|
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC------------------KSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEE------------------EEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCccee------------------eeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 46799999999999999999999998665331 112346899999999999999999999999
Q ss_pred CeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-eeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~ 159 (471)
+++++||+..+. .+..+ .+|...|.+++|+| ++++|++++.|++|++||+.+.... ....+..|...|.+++|+
T Consensus 83 ~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp SCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred CcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 999999988764 34444 79999999999999 9999999999999999999876543 234477899999999999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 160 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
|++ .+|++++.|+.|++||+++++........ + |...|.+++|+|+ +.+|++++.|+.|++||.......
T Consensus 160 p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~------~--h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 160 PSQ-ELLASASYDDTVKLYREEEDDWVCCATLE------G--HESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SSS-SCEEEEETTSCEEEEEEETTEEEEEEEEC------C--CSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCC-CEEEEEeCCCcEEEEEecCCCEEEEEEec------C--CCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCC
Confidence 999 57899999999999999887543322221 1 5568999999998 789999999999999997543321
Q ss_pred CCCCCCC-CCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 240 GSTDFGQ-PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
....... .....+.......|...|.+++|+|++..|++++ ++.|++|+...........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------------------ 291 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT------------------ 291 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC------------------
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee------------------
Confidence 1110000 0000011122234678899999999999999888 6689999987643211100
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC-cEEEEeeCCCeEEEEEccCCeeeEEe
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVI 381 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-~~l~~g~~dg~v~iwd~~~~~~~~~~ 381 (471)
.........+|... |.+++| +|++ .+|++|+.||.|++|++.+++....+
T Consensus 292 -----------~~~~~~~~~~h~~~--V~~v~~-~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 292 -----------FSLTAHLHQAHSQD--VNCVAW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp -----------EEEEEEETTSSSSC--EEEEEE-CSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred -----------EEEEeeecccccCc--EeEeEE-eCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 00011223467766 999999 9988 59999999999999999887765443
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-44 Score=336.92 Aligned_cols=331 Identities=9% Similarity=0.058 Sum_probs=266.4
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.++|+|++++|++|+.||.|++||..+++.. ..+..| ..+....|+|++++|++|+.|
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~l~~~~~d 118 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------KMLKRA-DYTAVDTAKLQMRRFILGTTE 118 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------TTSCSC-CEEEEEEECSSSCEEEEEETT
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------eEEecC-CceEEEEEecCCCEEEEEECC
Confidence 5789999999999999999999999977665 244455 455666789999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
|.|++||+.+++....+ .+|...|.+++|+| ++++|++++.|+.|++||+.+++.... +.+|...|.+++|+|++
T Consensus 119 g~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREID-QAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRT--LIGHRATVTDIAIIDRG 193 (420)
T ss_dssp SCEEEECTTSCEEEEET-TSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEE--EECCSSCEEEEEEETTT
T ss_pred CCEEEEeCCCcceeeec-ccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceE--EcCCCCcEEEEEEcCCC
Confidence 99999999988876554 79999999999999 999999999999999999988877655 78899999999999998
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcC--------------cceeeeeeEEEEEcCCCCceEEEEeCCCeE
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------------NYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (471)
..+++++.|+.|++||+++++....+......... ...+...+.+++|+|+ +.++++++.||.|
T Consensus 194 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i 271 (420)
T 3vl1_A 194 -RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSGVI 271 (420)
T ss_dssp -TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTSCE
T ss_pred -CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC-CCEEEEEcCCCeE
Confidence 57899999999999999999887776543211100 0001234556677888 7899999999999
Q ss_pred EEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee-CCcEEEEecCCCCCCCCCCCCCcccc
Q 012064 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (471)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~ 306 (471)
++||+++.+.. ......|...|.+++|+|+++ +|++++ ++.|++||++++.
T Consensus 272 ~i~d~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~------------- 324 (420)
T 3vl1_A 272 TVHNVFSKEQT--------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE------------- 324 (420)
T ss_dssp EEEETTTCCEE--------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------
T ss_pred EEEECCCCcee--------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-------------
Confidence 99999886532 223345678899999999998 888888 6799999998752
Q ss_pred ccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC---------ee
Q 012064 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---------EL 377 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~---------~~ 377 (471)
.....+.+|... .+.++.+ +++++|++++.||.|++||+... ..
T Consensus 325 ------------------------~~~~~~~~~~~~-~v~~~~~--~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 377 (420)
T 3vl1_A 325 ------------------------CPVGEFLINEGT-PINNVYF--AAGALFVSSGFDTSIKLDIISDPESERPAIEFET 377 (420)
T ss_dssp ------------------------SCSEEEEESTTS-CEEEEEE--ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTS
T ss_pred ------------------------CchhhhhccCCC-CceEEEe--CCCCEEEEecCCccEEEEeccCCCCCccceeccC
Confidence 234556653322 2777754 57889999999999999998763 22
Q ss_pred eEEecCCCcceEEEEEcCCCC---EEEEeecCCcEEEecCCC
Q 012064 378 IRVIEADRHVVNCIEPHPHST---VLASSGIESDIKILTPNA 416 (471)
Q Consensus 378 ~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~ 416 (471)
...+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 234567888999999999999 788888899999999875
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.6e-45 Score=332.16 Aligned_cols=287 Identities=18% Similarity=0.240 Sum_probs=227.8
Q ss_pred CCCCCCCCCcEEEEecC------CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCE
Q 012064 2 DDASNNNNNKRARTSVD------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI 75 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~ 75 (471)
.+++|+|||++||+|+. |++|++|+..++.... .+.....+|...|.+++|+|++++
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----------------~~~~~~~~~~~~V~~~~~s~d~~~ 108 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----------------SLCTAGVQTEAGVTDVAWVSEKGI 108 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----------------GGCSEEEECSSCEEEEEEETTTEE
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----------------eEecccCCCCCCEEEEEEcCCCCE
Confidence 46789999999999998 7889999988766442 112345578999999999999865
Q ss_pred EEEecCCCeEEEEECCCCceEEE---eecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 76 LISGSDDRRVILWDWKTERVKLS---FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
| +++.||+|+|||+.+++.... ...+|...|.+++|+| ++++|++++.|+.|++||+.+++.... +.+|...
T Consensus 109 l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~ 183 (357)
T 4g56_B 109 L-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSE 183 (357)
T ss_dssp E-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSC
T ss_pred E-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCC
Confidence 5 577899999999988765322 1247999999999999 999999999999999999988776654 7889999
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
|.+++|+|+++.++++++.|+.|++||+++++....+.... +...+.+++|+|+++.+|++|+.|+.|++||
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~--------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA--------SDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT--------CCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc--------ccccccchhhhhcccceEEEeecccceeEEE
Confidence 99999999987788999999999999999988765544321 4457899999999788999999999999999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeEEEee-CCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
+++.+.. .....|...|.+++|+|++ ++|++++ |++|++||++++
T Consensus 256 ~~~~~~~---------------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~------------------ 302 (357)
T 4g56_B 256 IKNPDSA---------------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS------------------ 302 (357)
T ss_dssp SSCGGGC---------------EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC------------------
T ss_pred CCCCcEe---------------EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC------------------
Confidence 9987632 3345677889999999987 5788887 668999998764
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC-CCcEEEEeeCCCeEEEEEccCC
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
+ .....+|... |++++| +| ++++|++|+.||+|++|++.+.
T Consensus 303 --------------------~-~~~~~~H~~~--V~~vaf-sP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 --------------------E-VFRDLSHRDF--VTGVAW-SPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp --------------------E-EEEECCCSSC--EEEEEE-CSSSTTEEEEEETTSCEEEEECC--
T ss_pred --------------------c-EeEECCCCCC--EEEEEE-eCCCCCEEEEEcCCCeEEEEECCCC
Confidence 1 2233467776 999999 98 8999999999999999999654
No 28
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-44 Score=363.53 Aligned_cols=399 Identities=8% Similarity=0.019 Sum_probs=274.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++||+|+.||+|+||+..+++.. .. ..|..+|.+++|+| |++|++++.
T Consensus 21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------~~-~~~~~~V~~l~fsp-g~~L~S~s~ 77 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------IK-LEDRSAIKEMRFVK-GIYLVVINA 77 (902)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEECSTTCEEE---------------------EE-CSSCCCEEEEEEET-TTEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE---------------------EE-cCCCCCEEEEEEcC-CCEEEEEEC
Confidence 35789999999999999999999998865543 22 34788999999999 889999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee---------eEeeceeee
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---------KLLGKHQGR 152 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~ 152 (471)
|++|++||+.+++.+..+ .|.+.|++++|+| +++++++|+.||.|++||+.+++.... ..+.+|.+.
T Consensus 78 D~~v~lWd~~~~~~~~~~--~~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 78 KDTVYVLSLYSQKVLTTV--FVPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TCEEEEEETTTCSEEEEE--ECSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred cCeEEEEECCCCcEEEEE--cCCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence 999999999999988777 3778999999999 999999999999999999987654211 124568899
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcC--------cceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------NYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
|.+++|+|++...+++++.||.| +||+++++....+..+...... ...+...|.+++|+|+ +.+|++++.
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~ 231 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHE 231 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEET
T ss_pred eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEEC
Confidence 99999999765688999999999 9999998877666533100000 0013457999999999 789999999
Q ss_pred CCeEEEEEcCCCccCCCCCC-----CCCCCcCCCCcccCCCccceEEEEEc----CCC-CeEEEeeCC------cEEEEe
Q 012064 225 DEYTRLYDIRKYKWDGSTDF-----GQPADYFCPPNLIGDEQVGITGLAFS----DQS-ELLVSYNDE------FIYLFT 288 (471)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~-~~l~~~~~~------~i~i~d 288 (471)
||.|++||+++++......+ ..+.. ........+...|.+++|+ |++ .+|++++.+ .+.+|+
T Consensus 232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~--~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMARTVFETEINVPQP--DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp TCCEEEEETTTCCEEEEECSSCSCTTSCCT--TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeecccccCCCCC--cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 99999999988764321000 00000 0000000123456666663 332 344444321 344444
Q ss_pred -----------------------------------------------------------------------cCCCCCCCC
Q 012064 289 -----------------------------------------------------------------------QDMGLGPNP 297 (471)
Q Consensus 289 -----------------------------------------------------------------------~~~~~~~~~ 297 (471)
+.++.....
T Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~ 389 (902)
T 2oaj_A 310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK 389 (902)
T ss_dssp EEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECC
T ss_pred cCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccc
Confidence 322211000
Q ss_pred -------CCCCCc--------------------------------cccccccccCCCCCCccCCCCCCcccccC-----C
Q 012064 298 -------PPSSPV--------------------------------STRSEASEMGSDHTSAASPSTANTDVRIA-----P 333 (471)
Q Consensus 298 -------~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 333 (471)
+..... ........+++++..+++.+.+...+.+. .
T Consensus 390 ~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~ 469 (902)
T 2oaj_A 390 ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI 469 (902)
T ss_dssp GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT
T ss_pred cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc
Confidence 000000 00000011233444444433333211110 1
Q ss_pred ---eeee---------cCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe-------------------------
Q 012064 334 ---QVYK---------GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE------------------------- 376 (471)
Q Consensus 334 ---~~~~---------~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~------------------------- 376 (471)
..+. +|... |.+++| +|||++||+|+.||+|+|||+.+++
T Consensus 470 ~~~~~~~~~l~~~~~~~h~~~--V~svaf-spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (902)
T 2oaj_A 470 QDNASFEVNLSRTLNKAKELA--VDKISF-AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNT 546 (902)
T ss_dssp TTTBCEEEEHHHHTTCSSSCC--EEEEEE-ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGS
T ss_pred cCCceEEeechhhcCCCCCCc--eeEEEe-cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCC
Confidence 1111 55555 999999 9999999999999999999998762
Q ss_pred --------------------eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc------ccC-cchhee
Q 012064 377 --------------------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA------TLP-TNIEQA 429 (471)
Q Consensus 377 --------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~------~~~-~~~~~~ 429 (471)
++..+.+|.+.|++++||||| +||+|+.|++|++||++++... .+. +|...+
T Consensus 547 ~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 547 NGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp SCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred ccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 367788999999999999999 9999999999999999876542 333 666667
Q ss_pred ehhhHH
Q 012064 430 MMMTMT 435 (471)
Q Consensus 430 ~~~~~~ 435 (471)
..++|.
T Consensus 626 ~sv~Fs 631 (902)
T 2oaj_A 626 TCIEFV 631 (902)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777765
No 29
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-43 Score=320.54 Aligned_cols=306 Identities=15% Similarity=0.183 Sum_probs=228.6
Q ss_pred eeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eEEEeecC-CCcceeEEEEecCCCCeEEEEEeCC
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
+++.+.+++|.++|.+++|+|+ +||+|+.|++|++||+..+. ....+..+ |...|.+++|+| ++++|++++.|
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s~D 79 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TSSEEEEEETT
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CCCEEEEEeCC
Confidence 3456789999999999999988 99999999999999998753 33334234 999999999999 99999999999
Q ss_pred CeEEEEeccccC-----cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcce
Q 012064 128 GQVRHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYM 201 (471)
Q Consensus 128 g~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 201 (471)
++|++||+.... ......+.+|...|.+++|+|++ ++|++++.|+.|++||++.. .....+.... +
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-----~-- 151 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQ-----E-- 151 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEEC-----C--
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEec-----c--
Confidence 999999985432 12234478899999999999999 58899999999999999543 2222111111 1
Q ss_pred eeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC--CCeEEEe
Q 012064 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSY 279 (471)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~ 279 (471)
|...|.+++|+|+ +.+|++++.|+.|++||.+.... .......+|...|.+++|+|+ +.+|+++
T Consensus 152 h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 152 HSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp CSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-------------eEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 5568999999998 78999999999999999876421 012345678889999999998 6788888
Q ss_pred e-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcE
Q 012064 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEY 357 (471)
Q Consensus 280 ~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~ 357 (471)
+ |++|++||+..+..... ........+.+ |... |.+++| ++++ +
T Consensus 218 s~D~~v~iw~~~~~~~~~~------------------------------~~~~~~~~~~~~h~~~--v~~v~~-s~~~-~ 263 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQ------------------------------QEWVCEAILPDVHKRQ--VYNVAW-GFNG-L 263 (330)
T ss_dssp ETTSCEEEEEEEEECTTSC------------------------------EEEEEEEECCSCCSSC--EEEEEE-CTTS-C
T ss_pred eCCCeEEEEEecCCCcccc------------------------------ceeEEeeecccccccc--eEEEEE-cCCC-E
Confidence 8 66899999875321100 00112233333 6555 999999 8665 8
Q ss_pred EEEeeCCCeEEEEEccCCe--eeE-EecCCCc-ceEEEEEcC--CCCEEEEeecCCcEEEecCCC
Q 012064 358 VVSGSDCGRIFIWKKKGGE--LIR-VIEADRH-VVNCIEPHP--HSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 358 l~~g~~dg~v~iwd~~~~~--~~~-~~~~h~~-~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~ 416 (471)
|++++.||.|++||..+++ ... .+.+|.. .|.+++|+| ++++|++++.||+|++|+++.
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999999999999998774 333 3467887 899999999 789999999999999999864
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.8e-44 Score=318.09 Aligned_cols=282 Identities=15% Similarity=0.189 Sum_probs=236.4
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++|++|+.||+|++||+++++.+ +.+.+|..+|.+++|+|++++|++|+.
T Consensus 17 ~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 17 KGIDFHPTEPWVLTTLYSGRVELWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcee---------------------EEeeccCCcEEEEEEeCCCCEEEEECC
Confidence 35789999999999999999999999988766 678899999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|++|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.|++|++||+.++.... ..+.+|...|.+++|+|+
T Consensus 76 d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~-~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEE-EEECCCCSCEEEEEECTT
T ss_pred CCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchh-hhhcccCCcEEEEEECCC
Confidence 999999999999998887 79999999999999 99999999999999999998764432 347889999999999996
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC-CCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
+..++++++.|+.|++||++++.....+... +...+..+.|+|. ++.+|++++.|+.|++||+++++..
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~- 221 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV- 221 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceeccC---------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-
Confidence 5578999999999999999887765554321 3346788888873 2579999999999999999887532
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
....+|...|.+++|+|++.+|++++ |+.|++||..++
T Consensus 222 --------------~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~--------------------------- 260 (304)
T 2ynn_A 222 --------------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--------------------------- 260 (304)
T ss_dssp --------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---------------------------
T ss_pred --------------eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------------------------
Confidence 33456788999999999999999998 668999999874
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc--EEEEeeCCCeEEEEEccC
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~--~l~~g~~dg~v~iwd~~~ 374 (471)
.....+..|... +.+++| +|+++ ++++|+.|| +.+|++.+
T Consensus 261 -----------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 261 -----------KVEKTLNVGLER--SWCIAT-HPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp -----------CEEEEECCSSSS--EEEEEE-CTTCGGGCEEEEETTE-EEEEECC-
T ss_pred -----------ceeeeccCCCcc--EEEEEE-CCCCCceEEEEecCCc-eEEEEecc
Confidence 345566667665 889998 77764 577777555 67777643
No 31
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.2e-44 Score=350.04 Aligned_cols=376 Identities=16% Similarity=0.176 Sum_probs=290.6
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccC----ccccccccceecccccceeeeeeeEEecccccc-EEEEEEcC--CCC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELG----QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNT--DGD 74 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~~~~s~--~g~ 74 (471)
..++|+|++++|++++ ++.|++|+++++ +.. ..+.+|.+. |++++|+| +++
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---------------------~~~~~h~~~~v~~~~~sp~~~~~ 79 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---------------------VQFTGHGSSVVTTVKFSPIKGSQ 79 (615)
T ss_dssp CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---------------------EEECTTTTSCEEEEEECSSTTCC
T ss_pred eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---------------------eEEecCCCceEEEEEECcCCCCC
Confidence 4678999999999998 889999999987 544 688999999 99999999 999
Q ss_pred EEEEecCCCeEEEEECCCC--------ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC----CeEEEEeccccCcce
Q 012064 75 ILISGSDDRRVILWDWKTE--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVE 142 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~ 142 (471)
+|++|+.||.|++||+.++ +....+ ..|...|.+++|+| ++++|++++.+ +.|++|| .++..
T Consensus 80 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~- 153 (615)
T 1pgu_A 80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSL- 153 (615)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEE-
T ss_pred EEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcc-
Confidence 9999999999999999755 444444 68999999999999 99999999987 7899998 33333
Q ss_pred eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeee---eeEEEEEcCCCCceE
Q 012064 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV---NLNAIAIDPRNANLF 219 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l 219 (471)
..+.+|...|.+++|+|+++.++++++.|+.|++||+++++....+.. +.. .|.+++|+|+++.++
T Consensus 154 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 154 -GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------HHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp -EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------SSCTTCCEEEEEECSTTCCEE
T ss_pred -eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------cCCCCceEEEEEECCCCCCEE
Confidence 337889999999999999966899999999999999998887766543 444 799999999846899
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccC---CCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~ 295 (471)
++++.||.|++||+++++.... ... .|...|.+++|+ ++++|++++ ++.+++||+.++...
T Consensus 223 ~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGEFLKY--------------IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEETTCCEEEEETTTCCEEEE--------------CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEeCCCeEEEEECCCCCEeEE--------------ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 9999999999999988763321 112 577889999999 999999888 668999999876533
Q ss_pred CCCCCCCc--cc--------------------------------------------------------------------
Q 012064 296 NPPPSSPV--ST-------------------------------------------------------------------- 305 (471)
Q Consensus 296 ~~~~~~~~--~~-------------------------------------------------------------------- 305 (471)
..+..... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~ 367 (615)
T 1pgu_A 288 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSM 367 (615)
T ss_dssp EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEE
T ss_pred EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhh
Confidence 22211100 00
Q ss_pred ------cccccccCCCCCCccCCCCCC-----------------------------------------------------
Q 012064 306 ------RSEASEMGSDHTSAASPSTAN----------------------------------------------------- 326 (471)
Q Consensus 306 ------~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 326 (471)
......+ +++..++....+.
T Consensus 368 ~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (615)
T 1pgu_A 368 HQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 446 (615)
T ss_dssp ECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred cCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccC
Confidence 0000000 0011111111000
Q ss_pred ---------------------cc------cccCC-eeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeee
Q 012064 327 ---------------------TD------VRIAP-QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (471)
Q Consensus 327 ---------------------~~------~~~~~-~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~ 378 (471)
.. ..... ..+.+|... +.+++| +|++++|++|+.||.|++||+.+++.+
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--v~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK--PSYISI-SPSETYIAAGDVMGKILLYDLQSREVK 523 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc--eEEEEE-CCCCCEEEEcCCCCeEEEeeCCCCcce
Confidence 00 00000 233345554 889999 999999999999999999999999999
Q ss_pred EEecC-CCcceEEEEEcC----------CCCEEEEeecCCcEEEecCCCC-CC-cccCcchheeehhhHH
Q 012064 379 RVIEA-DRHVVNCIEPHP----------HSTVLASSGIESDIKILTPNAA-DR-ATLPTNIEQAMMMTMT 435 (471)
Q Consensus 379 ~~~~~-h~~~v~~~~~s~----------~~~~l~s~~~dg~i~iw~~~~~-~~-~~~~~~~~~~~~~~~~ 435 (471)
..+.+ |...|++++|+| ++++|++++.||.|++|++.++ +. ..+..|...+..+.|.
T Consensus 524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEc
Confidence 99988 999999999999 9999999999999999999986 33 5566777777666554
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9e-43 Score=316.75 Aligned_cols=297 Identities=13% Similarity=0.220 Sum_probs=240.2
Q ss_pred eeeeeEEeccccccEEEEEEcCC-CCEEEEecCCCeEEEEECCCCce----EEEeecCCCcceeEEEEecCCCCeEEEEE
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 124 (471)
++.+..+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+++. ....+.+|...|.+++|+| ++++|+++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~ 104 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSG 104 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEE
Confidence 34556789999999999999998 68999999999999999976542 2223378999999999999 99999999
Q ss_pred eCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeee
Q 012064 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 125 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (471)
+.|+.|++|+......... ...+...+....+++++ ..+++++.|+.+++||+........... + +..
T Consensus 105 ~~d~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~-------~--~~~ 172 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDE-------S--HSE 172 (340)
T ss_dssp ETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSS-------S--CSS
T ss_pred cccccceEEeecccceeee--ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEec-------c--ccC
Confidence 9999999999877655543 56677888899999998 5789999999999999876643322111 1 455
Q ss_pred eeEEEEEcCCC-CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC
Q 012064 205 NLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE 282 (471)
Q Consensus 205 ~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~ 282 (471)
.+..++|++++ ..++++++.|+.|++||+++.+.. .....|...|.+++|+|++++|++++ |+
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~---------------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK---------------TNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee---------------eEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 78899998874 346788999999999999987632 23456788999999999999999988 67
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~ 362 (471)
.|++||+.+. ..+..+..+.. +.++.| +|++.++ +++
T Consensus 238 ~i~iwd~~~~--------------------------------------~~~~~~~~~~~---v~~~~~-~~~~~~~-~~~ 274 (340)
T 4aow_A 238 QAMLWDLNEG--------------------------------------KHLYTLDGGDI---INALCF-SPNRYWL-CAA 274 (340)
T ss_dssp EEEEEETTTT--------------------------------------EEEEEEECSSC---EEEEEE-CSSSSEE-EEE
T ss_pred eEEEEEeccC--------------------------------------ceeeeecCCce---EEeeec-CCCCcee-ecc
Confidence 8999999763 33445555443 888888 9987655 555
Q ss_pred CCCeEEEEEccCCeeeEEec---------CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 363 DCGRIFIWKKKGGELIRVIE---------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
.|+.|++||++++..+..+. +|...|++++|+|++++|++|+.||.|+|||+++|.
T Consensus 275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 69999999998887766553 678899999999999999999999999999999875
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-43 Score=319.47 Aligned_cols=295 Identities=18% Similarity=0.236 Sum_probs=228.6
Q ss_pred CCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEE
Q 012064 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (471)
Q Consensus 8 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~i 87 (471)
+++++|++|+.|++|++||+.+++... ........+.+|...|.+++|+|++.+|++|+.|++|++
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNG--------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSS--------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCccc--------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 489999999999999999998654321 011234678999999999999999999999999999999
Q ss_pred EECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC----
Q 012064 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP---- 163 (471)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 163 (471)
||+.+++.+..+ .+|...|.+++|+| ++++|++++.|++|++||+.............|...|.+++|+|++.
T Consensus 103 wd~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (343)
T 2xzm_R 103 WDLRTGTTYKRF-VGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179 (343)
T ss_dssp EETTSSCEEEEE-ECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred EECCCCcEEEEE-cCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccc
Confidence 999999988777 78999999999999 99999999999999999986332221111236888999999999862
Q ss_pred -----cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 164 -----HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 164 -----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
.++++++.|+.|++||.+ .+....+.. |...|.+++|+|+ +.+|++|+.||.|++||++....
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~----------h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKA----------HESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEETT-TEEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCSS
T ss_pred cCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcC----------ccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCcc
Confidence 478999999999999943 333333332 5568999999998 78999999999999999954321
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCC--CCCCCCccccccccccCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN--PPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 316 (471)
. .... .+...|.+++|+|++++++++.++.+++|++.++.... .+...+
T Consensus 248 ~--------------~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~-------------- 298 (343)
T 2xzm_R 248 P--------------QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP-------------- 298 (343)
T ss_dssp C--------------SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS--------------
T ss_pred c--------------ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc--------------
Confidence 1 1111 12346999999999999998889999999998754322 110000
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
........+|... +.+++| +|+|++|++|+.||.|++|+++++.
T Consensus 299 -------------~~~~~~~~~~~~~--v~~~~~-sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 299 -------------ITKAEGQKGKNPQ--CTSLAW-NALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp -------------GGGBTTBCCSCCC--EEEEEE-CSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred -------------chhhhhhcCCCCc--eEEEEE-CCCCCeEEEecCCceEEEEEEEccC
Confidence 0001112355554 899999 9999999999999999999987653
No 34
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-43 Score=375.26 Aligned_cols=384 Identities=15% Similarity=0.176 Sum_probs=294.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.++|+|+++++++|+.||+|++||..+++.+ ..+.+|.+.|.+++|+|+|++|++|+.|
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~d 678 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGEKL---------------------LDIKAHEDEVLCCAFSSDDSYIATCSAD 678 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCEE---------------------EEeccCCCCEEEEEEecCCCEEEEEeCC
Confidence 4679999999999999999999999988876 6788999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
++|++||+.+++.+..+ .+|...|.+++|+|..++.++++++.||.|++||+.+++.... +.+|...|.+++|+|++
T Consensus 679 ~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~sp~~ 755 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT--MFGHTNSVNHCRFSPDD 755 (1249)
T ss_dssp SEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE--ECCCSSCEEEEEECSST
T ss_pred CeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe--ecCCCCCEEEEEEecCC
Confidence 99999999999998887 7899999999999944456899999999999999988876654 78899999999999999
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCc---------------------------------------------
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------------------------------------------- 197 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------------------- 197 (471)
..+++++.||.|++||+++++....+........
T Consensus 756 -~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 756 -ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp -TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred -CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 5889999999999999998866554432110000
Q ss_pred CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE
Q 012064 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (471)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (471)
....+...+.+++|+|+ +.++++++.||.|++||+.+++. .....+|...|.+++|+|++++|+
T Consensus 835 ~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLK---------------VADCRGHLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp EECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEE
T ss_pred EcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCce---------------eeecCCCccceEEEEECCCCCEEE
Confidence 00024557888999998 68999999999999999987653 233456788999999999999999
Q ss_pred Eee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCc---ccccCCeeeecCCceeEeeeeeeeCC
Q 012064 278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT---DVRIAPQVYKGHRNCVTVKGVNFFGP 353 (471)
Q Consensus 278 ~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (471)
+++ ++.+++|++............. .......++...+........ ...........+.. .+.+++| +|
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~-sp 971 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQ----EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA--QVSCCCL-SP 971 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEE----EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS--CEEEEEE-CT
T ss_pred EEeCCCeEEEEEccccceeeeecccc----eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC--cEEEEEE-cC
Confidence 888 6689999986532221111000 000000000000000000000 00000011111122 2888998 99
Q ss_pred CCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccCcchheeehhh
Q 012064 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQAMMMT 433 (471)
Q Consensus 354 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 433 (471)
+++++++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++|++.+++......+...+..+.
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1051 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988776666666555544
Q ss_pred H
Q 012064 434 M 434 (471)
Q Consensus 434 ~ 434 (471)
+
T Consensus 1052 ~ 1052 (1249)
T 3sfz_A 1052 L 1052 (1249)
T ss_dssp E
T ss_pred E
Confidence 3
No 35
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-43 Score=321.65 Aligned_cols=279 Identities=19% Similarity=0.240 Sum_probs=236.0
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++|++|+.||+|++||..+++.. +.+..|...|.+++|+|+|.+|++|+.
T Consensus 68 ~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~---------------------~~~~~~~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE---------------------HAVTMPCTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------------------EEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCCcc---------------------eEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 35678999999999999999999999877765 567789999999999999999999999
Q ss_pred CCeEEEEECCCC------ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 82 DRRVILWDWKTE------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 82 d~~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
|+.+++|++... .....+ .+|...|.+++|+| ++..|++++.|++|++||+.+++.... +.+|...|.+
T Consensus 127 d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~ 201 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQS--FHGHGADVLC 201 (354)
T ss_dssp TSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEE
T ss_pred CCCEEEEEEeccccccccccceee-eccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEE--EcCCCCCeEE
Confidence 999999998643 222333 67999999999999 999999999999999999988876654 8889999999
Q ss_pred EEEccCC-CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 156 LAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 156 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
++|+|+. ...|++++.||.|++||+++++....+.. |...|.+++|+|+ +.+|++++.|+.|++||++
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~----------h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET----------HESDVNSVRYYPS-GDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETT
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECC
Confidence 9998852 26899999999999999999987776643 5568999999998 6899999999999999998
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccC
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (471)
..+..... ....+...+.+++|+|++++|++++ ++.|++||+.++
T Consensus 271 ~~~~~~~~-------------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--------------------- 316 (354)
T 2pbi_B 271 ADREVAIY-------------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG--------------------- 316 (354)
T ss_dssp TTEEEEEE-------------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------------------
T ss_pred CCcEEEEE-------------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---------------------
Confidence 76432110 0111234688999999999999988 568999998763
Q ss_pred CCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
..+..+.+|... |.+++| +|+|++|++|+.||.|++|+
T Consensus 317 -----------------~~~~~l~~h~~~--v~~l~~-spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 -----------------SRVSILFGHENR--VSTLRV-SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------SEEEEECCCSSC--EEEEEE-CTTSSCEEEEETTSEEEEEC
T ss_pred -----------------ceEEEEECCCCc--EEEEEE-CCCCCEEEEEcCCCCEEecC
Confidence 345667788876 999999 99999999999999999996
No 36
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-42 Score=339.38 Aligned_cols=351 Identities=16% Similarity=0.156 Sum_probs=268.9
Q ss_pred CCCCCC--CCcEEEEecCCCeEEEEEcccC--------cccccccc---------------ceeccccc----ceeee--
Q 012064 3 DASNNN--NNKRARTSVDKALVDVWLRELG--------QLSTRNFA---------------LRRRASED----LVLRL-- 51 (471)
Q Consensus 3 ~~~~~~--~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~---------------~~~~~~~~----~~~~~-- 51 (471)
+++|+| ++++|++|+.||+|++||++++ +....... .++.++.+ ..+.+
T Consensus 69 ~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred EEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 567899 9999999999999999999755 22221110 02222222 11111
Q ss_pred --eeeEEeccccccEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceEEEeecCCCc---ceeEEEEecCCC-CeEEEEE
Q 012064 52 --GIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTD-DRSIVTC 124 (471)
Q Consensus 52 --~~~~~l~~h~~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~-~~~l~s~ 124 (471)
+....+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+ .+|.. .|.+++|+| + +++|+++
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~--~~~~~l~~~ 225 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSP--DSGEFVITV 225 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECS--TTCCEEEEE
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECC--CCCCEEEEE
Confidence 45677889999999999999998 8999999999999999999988777 78988 999999999 9 9999999
Q ss_pred eCCCeEEEEeccccCcceeeEe-e---ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccC-----
Q 012064 125 AADGQVRHAQILERGGVETKLL-G---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID----- 195 (471)
Q Consensus 125 ~~dg~i~iwd~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----- 195 (471)
+.||.|++||+.+++.... + . .|...|.+++|+ ++ ..+++++.|+.|++||+++++....+......
T Consensus 226 ~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp ETTCCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred eCCCeEEEEECCCCCEeEE--ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 9999999999988776654 5 4 799999999999 77 68899999999999999987765544432000
Q ss_pred --------------------------------CcCc-------------------------------ceeeeeeEEEEE-
Q 012064 196 --------------------------------DRRN-------------------------------YMTVVNLNAIAI- 211 (471)
Q Consensus 196 --------------------------------~~~~-------------------------------~~~~~~v~~~~~- 211 (471)
...+ ..+...|.+++|
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence 0000 001122333333
Q ss_pred ---------------------------------cCCC-------------------------------------CceEEE
Q 012064 212 ---------------------------------DPRN-------------------------------------ANLFAV 221 (471)
Q Consensus 212 ---------------------------------~p~~-------------------------------------~~~l~~ 221 (471)
+|++ +.++++
T Consensus 382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence 1110 234555
Q ss_pred EeC-CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCC
Q 012064 222 AGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 222 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~ 299 (471)
++. |+.|++||+...+.. ......|...|.+++|+|++++|++++ ++.|++||+.++
T Consensus 462 ~~~~d~~i~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~------- 520 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVS--------------FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR------- 520 (615)
T ss_dssp EETTTSCEEEEETTEEEEE--------------EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred eecCCCeEEEEECCCcccc--------------ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-------
Confidence 555 667777776654321 023445778999999999999999998 668999999874
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCC----------CCcEEEEeeCCCeEE
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGP----------KCEYVVSGSDCGRIF 368 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~----------~g~~l~~g~~dg~v~ 368 (471)
.....+.+ |... |.+++| +| ++++|++|+.||.|+
T Consensus 521 -------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 521 -------------------------------EVKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp -------------------------------EEEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEE
T ss_pred -------------------------------cceeEeecCCCCc--eeEEEE-cCccccccccccCCCEEEEEcCCCcEE
Confidence 23344455 6665 999999 99 999999999999999
Q ss_pred EEEccCC-eeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 369 IWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 369 iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+||+.++ +.+..+.+|...|++++|+|+++ |++++.||.|++|+++.
T Consensus 567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999988 78899999999999999999999 99999999999999875
No 37
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.6e-43 Score=373.15 Aligned_cols=356 Identities=17% Similarity=0.215 Sum_probs=290.2
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccc-----------c------ceecccccceeee------eeeEEecc
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNF-----------A------LRRRASEDLVLRL------GIYAKLDK 59 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~------~~~~~l~~ 59 (471)
+++|+|+++++++|+.||+|++||+.+++.+.... . .+++++.|+.+.+ .....+.+
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence 46799999999999999999999999988765421 1 1445555655444 45678889
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe----------------------------------------
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF---------------------------------------- 99 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------------- 99 (471)
|.+.|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 9999999999999999999999999999998776543322
Q ss_pred --------------ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcE
Q 012064 100 --------------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (471)
Q Consensus 100 --------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (471)
..+|...|.+++|+| ++.++++++.||.|++|++.++..... +.+|...|.+++|+|++ ..
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg-~~ 896 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSP--YDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVMFSPDG-SS 896 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECS--STTEEEEECSSSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeee--cCCCccceEEEEECCCC-CE
Confidence 236788999999999 999999999999999999988766544 78899999999999999 57
Q ss_pred EEEEecCCeEEEEeccCCccc-----------------------------------------------------------
Q 012064 166 FYTCGEDGLVQHFDLRTGAAT----------------------------------------------------------- 186 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~----------------------------------------------------------- 186 (471)
+++++.||.|++||+++....
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 899999999999997531100
Q ss_pred ---------eeeeecccCC-cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc
Q 012064 187 ---------ELFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (471)
Q Consensus 187 ---------~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (471)
..+....... .....|...|.+++|+|+ +.++++++.||.|++||+.+++.. .
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~----------------~ 1039 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYV----------------F 1039 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEE----------------C
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceE----------------E
Confidence 0000000000 001125567899999998 689999999999999999887632 2
Q ss_pred cCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee
Q 012064 257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (471)
Q Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
...|...+.+++|+|++.+++.+.++.+++||+.++ .....+
T Consensus 1040 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~--------------------------------------~~~~~~ 1081 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG--------------------------------------RIERDF 1081 (1249)
T ss_dssp CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT--------------------------------------CCCEEE
T ss_pred EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC--------------------------------------ceeEEE
Confidence 335678899999999887777677889999999874 445677
Q ss_pred ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
.+|... +.+++| +|+++++++++.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+
T Consensus 1082 ~~~~~~--v~~~~~-s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1082 TCHQGT--VLSCAI-SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp ECCSSC--CCCEEE-CSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred cccCCc--EEEEEE-CCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 888876 899999 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcc
Q 012064 417 ADRAT 421 (471)
Q Consensus 417 ~~~~~ 421 (471)
++...
T Consensus 1159 ~~~~~ 1163 (1249)
T 3sfz_A 1159 GQLLH 1163 (1249)
T ss_dssp SCCCC
T ss_pred CceEE
Confidence 87643
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.3e-44 Score=328.17 Aligned_cols=296 Identities=16% Similarity=0.208 Sum_probs=234.8
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.++.|+|++++|++|+.||+|+|||..+++.. ..+.+|...|.+++|+|+|++|++|+.
T Consensus 70 ~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---------------------~~~~~h~~~v~~~~~s~~g~~las~~~ 128 (380)
T 3iz6_a 70 YSLDWTPEKNWIVSASQDGRLIVWNALTSQKT---------------------HAIKLHCPWVMECAFAPNGQSVACGGL 128 (380)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEEETTTTEEE---------------------EEEECCCTTCCCCEECTTSSEEEECCS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------------------eEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 35679999999999999999999999988766 678899999999999999999999999
Q ss_pred CCeEEEEECCCCc------eEEEeecCCCcceeEEEEecCCC-CeEEEEEeCCCeEEEEeccccCcceee---Eeeceee
Q 012064 82 DRRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETK---LLGKHQG 151 (471)
Q Consensus 82 d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~ 151 (471)
|+.+++||+.+.. .....+.+|.+.|.++.|.| + +..|++++.|++|++||+.+++..... ...+|..
T Consensus 129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS--SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec--CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 9999999987532 12233478999999999999 5 557999999999999999888765431 1157889
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
.|.+++|++.+..++++|+.|+.|++||++. ++....+.. |...|.+++|+|+ +.+|++|+.||.|++
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~----------h~~~v~~v~~~p~-~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG----------HEGDINSVKFFPD-GQRFGTGSDDGTCRL 275 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC----------CSSCCCEEEECTT-SSEEEEECSSSCEEE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC----------cCCCeEEEEEecC-CCeEEEEcCCCeEEE
Confidence 9999999885447899999999999999984 344444432 5568999999998 789999999999999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccc
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 309 (471)
||+++++....+... ......+...+.+++|+|+|++|++++ ++.|++||...+.....
T Consensus 276 wd~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~------------ 335 (380)
T 3iz6_a 276 FDMRTGHQLQVYNRE--------PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN------------ 335 (380)
T ss_dssp EETTTTEEEEEECCC--------CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE------------
T ss_pred EECCCCcEEEEeccc--------ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE------------
Confidence 999987643221110 001112234588999999999999988 66899999876421100
Q ss_pred cccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
......+|... |.+++| +|+|++|++|+.||.|++|++...+
T Consensus 336 ----------------------~~~~~~~h~~~--v~~l~~-s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 336 ----------------------LGTLQNSHEGR--ISCLGL-SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ----------------------ECCSCSSCCCC--CCEEEE-CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ----------------------EecccCCCCCc--eEEEEE-CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 00112467665 999999 9999999999999999999987653
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-43 Score=334.43 Aligned_cols=322 Identities=12% Similarity=0.061 Sum_probs=229.0
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC------CCEEEEec
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD------GDILISGS 80 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~------g~~l~s~~ 80 (471)
+|+++.+++++.|++|+||+++++++.. .....+.+|.+.|.+++|+|+ +.+||+++
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~-----------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHC-----------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp ------------CEEEEEEEEETTTCCE-----------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCc-----------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 3445556667789999999998776431 122456778899999999997 57999999
Q ss_pred CCCeEEEEECCCCceE-----------EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece
Q 012064 81 DDRRVILWDWKTERVK-----------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 149 (471)
.||+|++||+.+++.. ..+ .+|...|.+++|+| ++ .|++|+.||+|++||+.++... ...+.+|
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~--~~-~lasgs~DgtV~lWD~~~~~~~-~~~~~~H 307 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLS--PT-TVVCGFKNGFVAEFDLTDPEVP-SFYDQVH 307 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESS--SS-EEEEEETTSEEEEEETTBCSSC-SEEEECS
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecC--CC-eEEEEeCCCEEEEEECCCCCCc-eEEeecc
Confidence 9999999999876421 233 68999999999998 64 7999999999999999876432 2337889
Q ss_pred eeeEEEE--EEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCe
Q 012064 150 QGRAHKL--AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (471)
Q Consensus 150 ~~~v~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (471)
...|.++ +|+|+++++|++++.|++|++||+++++....+..+. ....+.+++|+|+ +..+++++.|++
T Consensus 308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------~~~~v~~v~fsp~-~~~l~s~~~d~t 378 (524)
T 2j04_B 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------RGSNLVPVVYCPQ-IYSYIYSDGASS 378 (524)
T ss_dssp SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------SCCSCCCEEEETT-TTEEEEECSSSE
T ss_pred cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------ccCcccceEeCCC-cCeEEEeCCCCc
Confidence 9999999 5677764689999999999999999987766554321 1124788999998 678999999999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCcccc
Q 012064 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (471)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~ 306 (471)
|++||+++... ...+.+|...|.+++|+|+|++|++++ |++|++||+..+.
T Consensus 379 v~lwd~~~~~~---------------~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~------------- 430 (524)
T 2j04_B 379 LRAVPSRAAFA---------------VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL------------- 430 (524)
T ss_dssp EEEEETTCTTC---------------CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-------------
T ss_pred EEEEECccccc---------------ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-------------
Confidence 99999987642 123446889999999999999999988 6689999975421
Q ss_pred ccccccCCCCCCccCCCCCCcccccCCeeeecC---CceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc-CCeeeEEec
Q 012064 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGH---RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIE 382 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~-~~~~~~~~~ 382 (471)
...+..+ .....+.+++| +|+|+.+.. ..+ ..+|+.. ++..+..+.
T Consensus 431 --------------------------~~~~~~~~~~~~~~~v~~v~~-sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 431 --------------------------LHGIKNSSATQKSLRLWKWDY-SIKDDKYRI-DSS--YEVYPLTVNDVSKAKID 480 (524)
T ss_dssp --------------------------TTCC------CCCCEEEECBC-CSSSCEEEE-CCC--CCCCC------------
T ss_pred --------------------------ccccccCccceeeeEEEEecc-CCCCCeEEc-cCC--ceecccccCCcceeeec
Confidence 0110000 01113678898 999985532 222 3344332 567788899
Q ss_pred CCCcceEEEEEcCCCC---EEEEeecCCcEEEecCCCC
Q 012064 383 ADRHVVNCIEPHPHST---VLASSGIESDIKILTPNAA 417 (471)
Q Consensus 383 ~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~ 417 (471)
+|...|.+++|+|+++ .+|+|+.||.|+||++...
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 9999999999999965 9999999999999998753
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.9e-42 Score=318.81 Aligned_cols=299 Identities=15% Similarity=0.137 Sum_probs=246.2
Q ss_pred eeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc------eEEEeecCCCcceeEEEEecCCC----C--
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD----D-- 118 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~----~-- 118 (471)
....+.+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+ .+|...|.+++|+| + +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~g~~ 80 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQ--AIERDAFE 80 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEE--EEETTTEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEec--ccccCCcc
Confidence 345678899999999999998 799999999999999999887 56666 68999999999999 8 9
Q ss_pred -eEEEEEeCCCeEEEEeccccCc-----ceeeEeece-----eeeEEEEEEc----cCCCcE-EEEEecCCeEEEEeccC
Q 012064 119 -RSIVTCAADGQVRHAQILERGG-----VETKLLGKH-----QGRAHKLAIE----PGSPHV-FYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 119 -~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~ 182 (471)
++|++++.||.|++|++.+++. ... +..| ...|.+++|+ |+++ . +++++.||.|++||+++
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEES
T ss_pred ccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCc
Confidence 9999999999999999988775 333 6677 5899999999 9984 6 89999999999999998
Q ss_pred ------Cccce-----eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcC
Q 012064 183 ------GAATE-----LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 183 ------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (471)
++... .+..... ....+...+.+++|+|+ + ++++++.||.|++||+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~------------ 220 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVE---SPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPL------------ 220 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEEC---CSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEE------------
T ss_pred cccccccceeeccCcceeeeeec---cccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCcee------------
Confidence 65554 3321000 00114567999999998 5 9999999999999999876532
Q ss_pred CCCcccCC---C---ccceEEEEEcCCCCeEEEee-C---CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 252 CPPNLIGD---E---QVGITGLAFSDQSELLVSYN-D---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 252 ~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
..... | ...|.+++|+|++++|++++ + +.|++||+.++.
T Consensus 221 ---~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---------------------------- 269 (397)
T 1sq9_A 221 ---YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---------------------------- 269 (397)
T ss_dssp ---EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----------------------------
T ss_pred ---EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----------------------------
Confidence 22233 5 77899999999999999888 5 689999998742
Q ss_pred CCCCCcccccCCeeeec-------------CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec------
Q 012064 322 PSTANTDVRIAPQVYKG-------------HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE------ 382 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~------ 382 (471)
.+..+.+ |... +.+++| +|++++|++++.||.|++||+.+++.+..+.
T Consensus 270 ----------~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 336 (397)
T 1sq9_A 270 ----------RIGSLSVPTHSSQASLGEFAHSSW--VMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336 (397)
T ss_dssp ----------EEEEECBC--------CCBSBSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred ----------ccceeccCcccccccccccccCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc
Confidence 2333444 5555 899999 9999999999999999999999999999998
Q ss_pred CC---------------CcceEEEEEcCCC----------CEEEEeecCCcEEEecCCCCC
Q 012064 383 AD---------------RHVVNCIEPHPHS----------TVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 383 ~h---------------~~~v~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~~ 418 (471)
+| ...|.+++|+|++ ++|++++.||.|++|++++++
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 88 8999999999998 799999999999999998753
No 41
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-43 Score=353.81 Aligned_cols=384 Identities=10% Similarity=0.091 Sum_probs=267.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
.++|+| +++|++++.|++|++||+++++++ ..+. |.+.|++++|+|++++|++|+.|
T Consensus 63 ~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~---------------------~~~~-~~~~V~~v~~sp~g~~l~sgs~d 119 (902)
T 2oaj_A 63 EMRFVK-GIYLVVINAKDTVYVLSLYSQKVL---------------------TTVF-VPGKITSIDTDASLDWMLIGLQN 119 (902)
T ss_dssp EEEEET-TTEEEEEETTCEEEEEETTTCSEE---------------------EEEE-CSSCEEEEECCTTCSEEEEEETT
T ss_pred EEEEcC-CCEEEEEECcCeEEEEECCCCcEE---------------------EEEc-CCCCEEEEEECCCCCEEEEEcCC
Confidence 467888 779999999999999999988766 3444 67899999999999999999999
Q ss_pred CeEEEEECCCCceEE----------EeecCCCcceeEEEEecCCC-CeEEEEEeCCCeEEEEeccccCcceeeEeec---
Q 012064 83 RRVILWDWKTERVKL----------SFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGK--- 148 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 148 (471)
|+|++||+.+++... ....+|.+.|.+++|+| + +..+++++.||.| +||+++++.... +..
T Consensus 120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp--~~~~~l~~g~~dg~v-lWd~~~~~~~~~--~~~~~~ 194 (902)
T 2oaj_A 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP--RDIGTVLISYEYVTL-TYSLVENEIKQS--FIYELP 194 (902)
T ss_dssp SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET--TEEEEEEEECSSCEE-EEETTTTEEEEE--ECCCBC
T ss_pred CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc--CCCCEEEEEeCCCcE-EEECCCCceEEE--EecccC
Confidence 999999999887531 11257899999999999 6 4789999999999 999988765543 333
Q ss_pred ---------------eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc--------Ccceeeee
Q 012064 149 ---------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------RNYMTVVN 205 (471)
Q Consensus 149 ---------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 205 (471)
|...|.+++|+|++ ..|++++.||.|++||+++++.+........... ....+...
T Consensus 195 ~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~ 273 (902)
T 2oaj_A 195 PFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAK 273 (902)
T ss_dssp TTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCE
T ss_pred CcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCC
Confidence 35789999999999 5899999999999999999876543111000000 00012335
Q ss_pred eEEEEEc----CCCCceEEEEeCC-----CeEEEEEc-------------------------------------------
Q 012064 206 LNAIAID----PRNANLFAVAGSD-----EYTRLYDI------------------------------------------- 233 (471)
Q Consensus 206 v~~~~~~----p~~~~~l~~~~~d-----g~i~i~d~------------------------------------------- 233 (471)
|.+++|+ |+++.++++|+.+ ..+.+|++
T Consensus 274 V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 353 (902)
T 2oaj_A 274 ISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPR 353 (902)
T ss_dssp EEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCS
T ss_pred eeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCC
Confidence 7777774 3323456666444 25666653
Q ss_pred ----------------------------CCCccCCCC-CCCCCCCc-------------------------CCCCcccCC
Q 012064 234 ----------------------------RKYKWDGST-DFGQPADY-------------------------FCPPNLIGD 259 (471)
Q Consensus 234 ----------------------------~~~~~~~~~-~~~~~~~~-------------------------~~~~~~~~~ 259 (471)
.++...... ........ ......+.+
T Consensus 354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G 433 (902)
T 2oaj_A 354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKG 433 (902)
T ss_dssp SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCC
T ss_pred CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccC
Confidence 211100000 00000000 000001223
Q ss_pred CccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCC--CC-------CCCccccccccccCCCCCCccCCCCCCccc
Q 012064 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP--PP-------SSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (471)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (471)
|...+..++|+|++++|++++ |++|++||+..+..... +. ............++++++.+++.+.+....
T Consensus 434 ~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~ 513 (902)
T 2oaj_A 434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVV 513 (902)
T ss_dssp SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEE
Confidence 334445566789999999998 66999999988742211 00 002233455667888888887766544211
Q ss_pred ------c---------------------------------------------cCCeeeecCCceeEeeeeeeeCCCCcEE
Q 012064 330 ------R---------------------------------------------IAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (471)
Q Consensus 330 ------~---------------------------------------------~~~~~~~~~~~~~~i~~~~~~s~~g~~l 358 (471)
. .+...+.+|... |++++| +||| +|
T Consensus 514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svaf-SpdG-~l 589 (902)
T 2oaj_A 514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINN-SNIG-FV 589 (902)
T ss_dssp EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEE-CBTS-EE
T ss_pred EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEe-cCCc-EE
Confidence 1 124566778776 999998 9999 99
Q ss_pred EEeeCCCeEEEEEccCCeeeE-----Eec-CCCcceEEEEEc-----CCC---CEEEEeecCCcEEEecC---CCCCC
Q 012064 359 VSGSDCGRIFIWKKKGGELIR-----VIE-ADRHVVNCIEPH-----PHS---TVLASSGIESDIKILTP---NAADR 419 (471)
Q Consensus 359 ~~g~~dg~v~iwd~~~~~~~~-----~~~-~h~~~v~~~~~s-----~~~---~~l~s~~~dg~i~iw~~---~~~~~ 419 (471)
|+|+.|++|++||+.++..+. .+. +|.+.|++++|+ ||| ++|++++.|++|++|++ .+++.
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 999999999999998876653 233 899999999999 886 79999999999999999 55554
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=310.08 Aligned_cols=303 Identities=16% Similarity=0.195 Sum_probs=253.8
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDC--FTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcC--CCCEEEEEeCCCeEE
Confidence 444678999999999999999999999999999999999999988777 78999999999999 999999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC-----CeEEEEeccCCccceeeeecccCC---cCcceee
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDD---RRNYMTV 203 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~ 203 (471)
+||+.+++.... +. +...+.+++|+|++ ..+++++.+ +.|++||++.......+....... ...+...
T Consensus 100 iwd~~~~~~~~~--~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 100 LWDVSNGQCVAT--WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEETTTCCEEEE--EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEECCCCcEEEE--ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 999988876654 44 88899999999999 578888888 999999998876554443221111 1111122
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC-ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D 281 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 281 (471)
..+.+++|+|+ +.++++++.||.|++||+++. +. ......|...|.+++|+|++++|++++ +
T Consensus 176 ~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 176 DAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEY---------------VDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp CCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEE---------------EEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEe---------------EEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 27999999998 689999999999999999873 31 233445678899999999999999888 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe
Q 012064 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (471)
Q Consensus 282 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g 361 (471)
+.|++||+.++ .....+. +... +.+++| +|++++++++
T Consensus 240 ~~i~v~d~~~~--------------------------------------~~~~~~~-~~~~--~~~~~~-~~~~~~l~~~ 277 (369)
T 3zwl_B 240 TNSFLVDVSTL--------------------------------------QVLKKYE-TDCP--LNTAVI-TPLKEFIILG 277 (369)
T ss_dssp SEEEEEETTTC--------------------------------------CEEEEEE-CSSC--EEEEEE-CSSSSEEEEE
T ss_pred ceEEEEECCCC--------------------------------------ceeeeec-CCCC--ceeEEe-cCCCceEEEe
Confidence 68999999774 2233344 3333 888998 9999999999
Q ss_pred eCCC--------------eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 362 SDCG--------------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 362 ~~dg--------------~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+.++ .+++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|+++.+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 9888 899999999999999999999999999999999999999999999999987543
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-41 Score=305.49 Aligned_cols=279 Identities=19% Similarity=0.317 Sum_probs=235.0
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++|++|+.||.|++|+..+++.. ..+.+|...|.+++|+|++++|++|+.
T Consensus 27 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 27 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFE---------------------KTISGHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCcccc---------------------hhhccCCCceEEEEEcCCCCEEEEECC
Confidence 35679999999999999999999999987766 578899999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
|+.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.|+.|++||+.+++.... +..|..+|.+++|+|+
T Consensus 86 d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRD 160 (312)
T ss_dssp TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTT
T ss_pred CCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCC
Confidence 999999999999988777 78999999999999 999999999999999999988776554 7789999999999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
+ .++++++.||.|++||+++++....+... +...+..++|+|+ +.++++++.||.|++||+++.+....
T Consensus 161 ~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 161 G-SLIVSSSYDGLCRIWDTASGQCLKTLIDD---------DNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp S-SEEEEEETTSCEEEEETTTCCEEEEECCS---------SCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred C-CEEEEEeCCCcEEEEECCCCceeeEEecc---------CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 8 57899999999999999998776554321 3446899999998 68999999999999999988764322
Q ss_pred CCCCCCCCcCCCCcccCCCcc---ceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 242 TDFGQPADYFCPPNLIGDEQV---GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
...|.. .+......+++++|++++ ++.|++||+.++
T Consensus 230 ---------------~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------------------------- 269 (312)
T 4ery_A 230 ---------------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK------------------------- 269 (312)
T ss_dssp ---------------ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-------------------------
T ss_pred ---------------EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-------------------------
Confidence 111111 122233346788899888 668999999763
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee--CCCeEEEEEcc
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKK 373 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~--~dg~v~iwd~~ 373 (471)
..+..+.+|... +.+++| +|+++++++++ .|+.|++|+..
T Consensus 270 -------------~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 -------------EIVQKLQGHTDV--VISTAC-HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -------------CEEEEECCCSSC--EEEEEE-CSSSSEEEEEECTTTCCEEEEECC
T ss_pred -------------hhhhhhhccCCc--EEEEee-cCcCCceEEEEccCCccEEEecCC
Confidence 445677888876 899999 99999999986 69999999863
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.8e-42 Score=315.47 Aligned_cols=315 Identities=18% Similarity=0.241 Sum_probs=232.6
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++||+|+ |+++++|++.+|+.+........... + ...+ .......+...|.+++|+|+|++|++|+.
T Consensus 68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~-~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 68 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-D-PENL-NTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc-c-cccc-cccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 4578999999999987 78999999998887632111000000 0 0000 00111123456999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc-
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP- 160 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~- 160 (471)
|+.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.|++|++||+.+++.... + .+...+.+++|+|
T Consensus 144 d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~--~-~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLT--L-SIEDGVTTVAVSPG 217 (393)
T ss_dssp TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECST
T ss_pred CCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEE--E-EcCCCcEEEEEECC
Confidence 999999999999887776 79999999999999 999999999999999999988765443 3 3567899999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (471)
++ .++++++.|+.|++||+++++....+..... ....|...|.+++|+|+ +.+|++++.|+.|++||+++.....
T Consensus 218 ~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~---~~~~h~~~v~~v~~~~~-g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 218 DG-KYIAAGSLDRAVRVWDSETGFLVERLDSENE---SGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp TC-CEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC-------
T ss_pred CC-CEEEEEcCCCcEEEEECCCCcEEEeeccccc---CCCCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCCcc
Confidence 55 6899999999999999999887665532111 01115568999999998 6899999999999999998754221
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
.... +.. ........+|...|.+++|+|++++|++++ ++.|++||..++
T Consensus 293 ~~~~--~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~--------------------------- 342 (393)
T 1erj_A 293 DSKT--PNS-GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--------------------------- 342 (393)
T ss_dssp -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------------------------
T ss_pred cccC--CCC-CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------------------------
Confidence 1100 000 011123446778899999999999999998 668999998774
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeC------CCCcEEEEeeCCCeEEEEEccCC
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s------~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
.....+.+|... |.+++| + |++++|++|+.||.|++|++...
T Consensus 343 -----------~~~~~l~~h~~~--v~~v~~-~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 343 -----------NPLLMLQGHRNS--VISVAV-ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp -----------CEEEEEECCSSC--EEEEEE-CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred -----------eEEEEECCCCCC--EEEEEe-cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 345678888886 888887 5 47899999999999999998643
No 45
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=311.46 Aligned_cols=300 Identities=14% Similarity=0.167 Sum_probs=240.0
Q ss_pred EEeccccccEEEEEEcCCCCEE-EEecC---CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCC---CeEEEEEeCC
Q 012064 55 AKLDKHRGCVNTVSFNTDGDIL-ISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAAD 127 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l-~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~s~~~d 127 (471)
+.+++|.+.|.+++|+|++..+ ++|+. |+.|++||+.+++.......+|...|.+++|+| + +++|++++.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCCCceEEEecCC
Confidence 5567899999999999999654 56665 899999999998876665558999999999999 7 6999999999
Q ss_pred CeEEEEeccccC-cceeeEeeceeeeEEEEEE------ccCCCcEEEEEecCCeEEEEeccCCc-cceeeeecccCCcCc
Q 012064 128 GQVRHAQILERG-GVETKLLGKHQGRAHKLAI------EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRN 199 (471)
Q Consensus 128 g~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~ 199 (471)
|.|++||+.+++ .... +.+|...|.+++| +|++ ..+++++.||.|++||+++++ ....+......
T Consensus 90 g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---- 162 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYS--VKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE---- 162 (357)
T ss_dssp SCEEEECTTSCSSCSEE--ECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTS----
T ss_pred CeEEEEeCCCCCccEEE--EEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCC----
Confidence 999999998877 4433 7889999999955 6777 578999999999999999887 55555432211
Q ss_pred ceeeeeeEEEE----EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC---C
Q 012064 200 YMTVVNLNAIA----IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---Q 272 (471)
Q Consensus 200 ~~~~~~v~~~~----~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~ 272 (471)
....+.+++ |+|+ +.++++++.||.|++||+++.+.. ....+...|.+++|+| +
T Consensus 163 --~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----------------~~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 163 --NKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALR----------------WETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp --CCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEE----------------EEEECSSCEEEEEESCSSSS
T ss_pred --CCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCcee----------------eecCCCCceEEEEcCCCCCC
Confidence 233678887 6787 789999999999999999987631 2234567899999999 8
Q ss_pred CCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 273 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
+.+|++++ ++.|++||++++..... .....+.+|... +.+++|
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------------------~~~~~~~~~~~~--v~~~~~- 267 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKG---------------------------------FASVSEKAHKST--VWQVRH- 267 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTE---------------------------------EEEEEEECCSSC--EEEEEE-
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccc---------------------------------eeeeccCCCcCC--EEEEEE-
Confidence 99998888 67899999976422111 001133477776 999999
Q ss_pred CCCCc-EEEEeeCCCeEEEEEccCC-------------------eeeEEecCCCcceEEEEEcCCCCEEE-EeecCCcEE
Q 012064 352 GPKCE-YVVSGSDCGRIFIWKKKGG-------------------ELIRVIEADRHVVNCIEPHPHSTVLA-SSGIESDIK 410 (471)
Q Consensus 352 s~~g~-~l~~g~~dg~v~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~ 410 (471)
+|+++ +|++|+.||.|++||+..+ +.+..+.+|.+.|.+++|+|++++|+ +++.||.|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 99998 8999999999999999753 46677889999999999999999988 899999999
Q ss_pred EecCCCCC
Q 012064 411 ILTPNAAD 418 (471)
Q Consensus 411 iw~~~~~~ 418 (471)
+|++.+.+
T Consensus 348 iw~~~~~~ 355 (357)
T 3i2n_A 348 VLIVTKLN 355 (357)
T ss_dssp EEEECC--
T ss_pred EEECCCcc
Confidence 99998654
No 46
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.6e-42 Score=322.97 Aligned_cols=319 Identities=13% Similarity=0.134 Sum_probs=226.2
Q ss_pred eeeEEeccccccEEEEEEcC-CCCEEEEecCCCeEEEEECCCCceEEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
.+.+...+|...|+|++|+| ++++||+|+.||+|+|||+.+++....+ ..+|.+.|++++|+|. ++++|++++.||+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~ 188 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGT 188 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCE
Confidence 44566778999999999999 5679999999999999999877643332 3689999999999983 5789999999999
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
|++||++............+...+.+++|+|++ .++++|+.||.|++||++... +..+.. |...|.++
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~~~----------h~~~v~~v 256 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNLRM----------HKKKVTHV 256 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCSBC----------CSSCEEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEEec----------ccceEEee
Confidence 999999765332221122334467889999999 588999999999999997543 322221 56689999
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEe
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d 288 (471)
+|+|++..++++++.|+.|++||+++.+.... ......|...|.+++|+|+|++|++++ |+.|++||
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKAS------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSC------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccce------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence 99999777899999999999999987653221 122345788999999999999999988 67899999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe-eCCCeE
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRI 367 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g-~~dg~v 367 (471)
+.++.....+.......... ............. +..+.+ ++++..++++ ..++.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~--~~~~~~-~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQH---------------------LTPIKAAWHPRYN--LIVVGR-YPDPNFKSCTPYELRTI 380 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSS---------------------SCCCBCEECSSSS--CEEEEC-CCCTTSCCSSTTCCCCE
T ss_pred CCCCccceEEeccccccccc---------------------ceeEEEEEcCCCC--EEEEEE-cCCCCeEEEEecCCCEE
Confidence 98754322211100000000 0000000000000 222333 4444444333 344689
Q ss_pred EEEEccCCeeeEEec-CCCcceEEE-EEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 368 FIWKKKGGELIRVIE-ADRHVVNCI-EPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 368 ~iwd~~~~~~~~~~~-~h~~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++++++.+
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 999999999988765 677888887 6999999999886 889999999987653
No 47
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.3e-41 Score=310.81 Aligned_cols=315 Identities=14% Similarity=0.143 Sum_probs=239.5
Q ss_pred eeeeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
.+.+.+.+.+|.+.|.+++|+|++ ++|++|+.||.|++||+.+++....+. .+|...|.+++|+|. ++++|++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCC
Confidence 346677899999999999999999 999999999999999999888766663 379999999999992 35899999999
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
+.|++||+.............|...|.+++|+|++ ..+++++.|+.|++||++ ++....+.. +...|.
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~----------h~~~v~ 208 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKL----------HKAKVT 208 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEEC----------SSSCEE
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEecc----------CCCcEE
Confidence 99999999853222211122344789999999999 588999999999999994 555555443 556899
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeEEEee-CCcEE
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIY 285 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~ 285 (471)
+++|+|++..++++++.|+.|++||+++.+.... ..... .|...|.+++|+| ++++|++++ ++.|+
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS-----------YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC-----------EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc-----------eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 9999999544999999999999999997542111 11112 4678999999999 999999888 67999
Q ss_pred EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 286 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
+||+.++.....+.......... .......+.... .+..++| +|++++ +|+.||
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~p~~---~~~~~~~-s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQH--------------------LTPIKATWHPMY---DLIVAGR-YPDDQL--LLNDKR 330 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTT--------------------SCCCCCEECSSS---SEEEEEC-BCCTTT--CTTCCC
T ss_pred EEECCCCcccccccccccccccc--------------------ccceEEeccCCC---CceEEEe-cCCccc--ccCCCC
Confidence 99998765433321111000000 000000111111 1455777 888888 888999
Q ss_pred eEEEEEccCCeeeEEecC--CCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 366 RIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 366 ~v~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
.|++||+.+++.+..+.+ |.+.+..++|+|++++|++++ |+.|++|++++
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999999999999987 456788889999999999997 99999999875
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6e-41 Score=316.03 Aligned_cols=306 Identities=21% Similarity=0.291 Sum_probs=258.6
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeE
Q 012064 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (471)
Q Consensus 6 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i 85 (471)
+.++++++++|+.||+|++||+++++.+ ..+.+|.+.|.+++|+ +++|++|+.||+|
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCL---------------------RTLVGHTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEE---------------------EECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEE---------------------EEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence 4557899999999999999999988876 6788999999999997 6699999999999
Q ss_pred EEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcE
Q 012064 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (471)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (471)
++||+.+++.+..+ .+|...|.++.|++ +.+++++.||.|++||+.+++.... +.+|...+.+++| ++ ..
T Consensus 182 ~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~--~~-~~ 251 (445)
T 2ovr_B 182 KVWNAETGECIHTL-YGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQY--DG-RR 251 (445)
T ss_dssp EEEETTTTEEEEEE-CCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEE--CS-SC
T ss_pred EEEECCcCcEEEEE-CCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEE--EcCCcccEEEEEE--CC-CE
Confidence 99999999988777 78999999999954 6799999999999999988776654 7889999999999 45 46
Q ss_pred EEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCC
Q 012064 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (471)
+++++.||.|++||+++++....+.. +...+.+++| + +.++++++.||.|++||+++++..
T Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~------ 312 (445)
T 2ovr_B 252 VVSGAYDFMVKVWDPETETCLHTLQG----------HTNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCI------ 312 (445)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECC----------CSSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEE------
T ss_pred EEEEcCCCEEEEEECCCCcEeEEecC----------CCCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEE------
Confidence 89999999999999999887766653 4557899999 4 578999999999999999887532
Q ss_pred CCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCC
Q 012064 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (471)
.....|...+.++.++ ++++++++ ++.|++||+.++
T Consensus 313 ---------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~-------------------------------- 349 (445)
T 2ovr_B 313 ---------HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG-------------------------------- 349 (445)
T ss_dssp ---------EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------------------------------
T ss_pred ---------EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC--------------------------------
Confidence 2334566778887774 56888887 678999999764
Q ss_pred CCcccccCCeeeec---CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe-----cCCCcceEEEEEcCC
Q 012064 325 ANTDVRIAPQVYKG---HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPH 396 (471)
Q Consensus 325 ~~~~~~~~~~~~~~---~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~~ 396 (471)
.....+.+ |... +.+++| + +++|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|+
T Consensus 350 ------~~~~~~~~~~~~~~~--v~~~~~-~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 350 ------QCLQTLQGPNKHQSA--VTCLQF-N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp ------CEEEEECSTTSCSSC--EEEEEE-C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred ------cEEEEEccCCCCCCC--EEEEEE-C--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 23344444 4444 888888 5 579999999999999999999998888 468889999999999
Q ss_pred CCEEEEeecCCc----EEEecCCCC
Q 012064 397 STVLASSGIESD----IKILTPNAA 417 (471)
Q Consensus 397 ~~~l~s~~~dg~----i~iw~~~~~ 417 (471)
+.++++++.||+ |.+||+...
T Consensus 419 ~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999998 999999864
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-41 Score=335.00 Aligned_cols=294 Identities=14% Similarity=0.217 Sum_probs=237.6
Q ss_pred eeeEEeccccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCc----eEEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
.....+++|.+.|++++|+|++ ++|+||+.|++|++||+.+.. .....+.+|...|.+++|+| ++++|++++.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSW 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEET
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeC
Confidence 4556789999999999999875 799999999999999997643 12233479999999999999 9999999999
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
||+|++||+.++..... +.+|...|.+++|+|++ ..+++++.|+.|++||+........... ...|...|
T Consensus 451 Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~-------~~~h~~~v 520 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEG-------GEGHRDWV 520 (694)
T ss_dssp TSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSS-------TTSCSSCE
T ss_pred CCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccC-------CCCCCCcE
Confidence 99999999988766544 78999999999999999 5789999999999999865432221111 11155679
Q ss_pred EEEEEcCCC-CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcE
Q 012064 207 NAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (471)
Q Consensus 207 ~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i 284 (471)
.+++|+|++ ...+++++.|+.|++||+++.+. .....+|...|.+++|+|++++|++++ ++.|
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL---------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE---------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 999999984 25899999999999999987653 234556788999999999999999998 6689
Q ss_pred EEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC
Q 012064 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d 364 (471)
++||+.+++ .+..+..+. .+.+++| +|++.++++++ +
T Consensus 586 ~iwd~~~~~--------------------------------------~~~~~~~~~---~v~~~~~-sp~~~~l~~~~-~ 622 (694)
T 3dm0_A 586 LLWDLAEGK--------------------------------------KLYSLEANS---VIHALCF-SPNRYWLCAAT-E 622 (694)
T ss_dssp EEEETTTTE--------------------------------------EEECCBCSS---CEEEEEE-CSSSSEEEEEE-T
T ss_pred EEEECCCCc--------------------------------------eEEEecCCC---cEEEEEE-cCCCcEEEEEc-C
Confidence 999998742 222222222 2889998 99999888776 5
Q ss_pred CeEEEEEccCCeeeEEecCCC-------------------cceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 365 GRIFIWKKKGGELIRVIEADR-------------------HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 365 g~v~iwd~~~~~~~~~~~~h~-------------------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+.|++||+.+++.+..+..+. ..+++++|+|+|++|++++.||.|+||++.
T Consensus 623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 669999999998887765332 137899999999999999999999999985
No 50
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-41 Score=307.21 Aligned_cols=296 Identities=19% Similarity=0.247 Sum_probs=236.8
Q ss_pred CCCCCCCC-CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 2 DDASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 2 ~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
.+++|+|+ +++||+|+.||+|+|||+++++.. .....+.+.+|.+.|.+++|+|+|++|++++
T Consensus 42 ~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 42 TQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp EEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 45778987 689999999999999999876543 2234467899999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.|+.|++|+.......... ..+...+....++| ++.+|++++.|+.+++||+...... .....+|...+..++|++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEE-EECSSSCSSCEEEEEECS
T ss_pred ccccceEEeecccceeeee-cCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceE-EEEeccccCcccceEEcc
Confidence 9999999999988876665 67888899999999 9999999999999999998655432 233567899999999998
Q ss_pred CCC-cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 161 GSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 161 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
++. .++++++.|+.|++||+++++....+.. +...|.+++|+|+ +.+|++|+.||.|++||+++.+..
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~----------h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG----------HTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCceeeEecC----------CCCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCcee
Confidence 753 3678899999999999999887766643 5568999999998 789999999999999999987632
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
.. . .+...+.++.|+|++.+++++.++.|++||++.+.....+..
T Consensus 251 ~~---------------~-~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------------------- 295 (340)
T 4aow_A 251 YT---------------L-DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ------------------- 295 (340)
T ss_dssp EE---------------E-ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC-------------------
T ss_pred ee---------------e-cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc-------------------
Confidence 11 1 124579999999999988888899999999976432211110
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
........+|... |.+++| +|+|++|++|+.||.|+|||+++|+
T Consensus 296 ----------~~~~~~~~~h~~~--v~~l~~-s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 296 ----------EVISTSSKAEPPQ--CTSLAW-SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ----------C-------CCCCC--EEEEEE-CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ----------cceeeeccCCCCC--EEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 1112233456655 999999 9999999999999999999999885
No 51
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=299.36 Aligned_cols=294 Identities=18% Similarity=0.218 Sum_probs=244.6
Q ss_pred eeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 129 (471)
..++.+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+ ..|...|.+++|+| +++++++++.||.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 82 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDS--EKELLLFGGKDTM 82 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEET--TTTEEEEEETTSC
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECC--CCCEEEEecCCCe
Confidence 34566889999999999999 99999999999999999999888876666 68999999999999 9999999999999
Q ss_pred EEEEeccccCc-ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 130 VRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 130 i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
+++|++..... .....+..|...|.+++|. + ..+++++.|+.|++|| .++....+.. +...+.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~----------~~~~v~~ 147 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQA----------HNASVWD 147 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEEC----------CSSCEEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEeccc----------CCCceeE
Confidence 99999876532 2223477899999999993 4 4789999999999999 4444444443 5557899
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEe
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d 288 (471)
++|.|.++.++++++.||.|++||..... ......+...+.+++|+|++.+++.+.++.+++||
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d 211 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKVI----------------KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEEE----------------EEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCceE----------------EEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEE
Confidence 99998447899999999999999944322 12223367889999999999844444477999999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
++++ .....+.+|... +.+++| +|++ .|++++.||.|+
T Consensus 212 ~~~~--------------------------------------~~~~~~~~~~~~--i~~~~~-~~~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 212 MHTG--------------------------------------DVLRTYEGHESF--VYCIKL-LPNG-DIVSCGEDRTVR 249 (313)
T ss_dssp TTTC--------------------------------------CEEEEEECCSSC--EEEEEE-CTTS-CEEEEETTSEEE
T ss_pred CCch--------------------------------------hhhhhhhcCCce--EEEEEE-ecCC-CEEEEecCCEEE
Confidence 9763 345667778776 999999 9999 588999999999
Q ss_pred EEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcc
Q 012064 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (471)
+||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|++++++...
T Consensus 250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 250 IWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 999999999999999999999999999998 5678999999999999876644
No 52
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-41 Score=306.07 Aligned_cols=243 Identities=16% Similarity=0.154 Sum_probs=203.4
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
+++|+|++ .+++|+.||+|+|||+++++.+. .....+.+|.+.|++++|+|+|++|++|+.|
T Consensus 87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~-----------------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d 148 (344)
T 4gqb_B 87 DLTWVGER-GILVASDSGAVELWELDENETLI-----------------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD 148 (344)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------------EEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------------EeeccccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 46788875 67899999999999999888652 1123466899999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
++|++||+.+++.+..+ .+|.+.|.+++|+| ++ ..|++++.|++|++||+++++.........+...+.+++|+|+
T Consensus 149 ~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 149 ICIKVWDLAQQVVLSSY-RAHAAQVTCVAASP--HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp SCEEEEETTTTEEEEEE-CCCSSCEEEEEECS--SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred CeEEEEECCCCcEEEEE-cCcCCceEEEEecC--CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence 99999999999998877 79999999999999 77 4789999999999999998887665434556678999999998
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
+.+++++|+.||.|++||+++++.+..+.. |...|++++|+|++..+|++|+.|+.|++||+++++..
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~----------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-- 293 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAV----------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-- 293 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEEC----------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE--
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcC----------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--
Confidence 778899999999999999999988877764 55689999999996678999999999999999887531
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee-CCcEEEEecCCC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~d~~~~ 292 (471)
...+|...|.+++|+|+++ +|++++ |++|++|++.+.
T Consensus 294 --------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 294 --------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp --------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred --------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 2356888999999999986 566777 779999999764
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-41 Score=304.19 Aligned_cols=290 Identities=14% Similarity=0.191 Sum_probs=211.7
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEe-cc-ccccEEEEEEcCCCCEEEEecC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DK-HRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+.++++ +||+|+.||+|++||++++... ....+ .+ |.+.|.+++|+|++++|++|+.
T Consensus 20 ~~~s~~--~las~~~D~~i~lw~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 20 FDFSQG--ILATGSTDRKIKLVSVKYDDFT-------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp EEEETT--EEEEEESSSCEEEEECSSSCCE-------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred eccCCC--EEEEEcCCCEEEEEEecCCCeE-------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 456665 9999999999999999865321 12344 34 9999999999999999999999
Q ss_pred CCeEEEEECCC-------CceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC--cceeeEeeceeee
Q 012064 82 DRRVILWDWKT-------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGR 152 (471)
Q Consensus 82 d~~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~ 152 (471)
|++|++||+.. .+.+..+ .+|...|.+++|+| ++++|++++.|++|++||+.... ......+.+|...
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEE-C----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred CCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 99999999853 2333444 79999999999999 99999999999999999995432 1223447889999
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCc--cceeeeecccCCcCcceeeeeeEEEEEcCCC-CceEEEEeCCCeEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTR 229 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~ 229 (471)
|.+++|+|++ .+|++++.|+.|++||.+++. ....+.. |...|.+++|+|++ +.+|++++.|+.|+
T Consensus 156 v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 156 VKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNG----------HEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp EEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECC----------CSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred eEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccC----------CCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 9999999998 589999999999999988763 3333322 55689999999973 35799999999999
Q ss_pred EEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCcccccc
Q 012064 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (471)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 308 (471)
+||++........ ...+...+...|...|.+++|++++ +|++++ ++.|++|+...+.
T Consensus 225 iw~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~--------------- 282 (330)
T 2hes_X 225 VWKYMGDDEDDQQ------EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE--------------- 282 (330)
T ss_dssp EEEEEEECTTSCE------EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE---------------
T ss_pred EEEecCCCccccc------eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc---------------
Confidence 9999765311000 0001111223377889999999877 566555 7799999986531
Q ss_pred ccccCCCCCCccCCCCCCcccccCC-eeeecCCc-eeEeeeeeeeCC--CCcEEEEeeCCCeEEEEEccC
Q 012064 309 ASEMGSDHTSAASPSTANTDVRIAP-QVYKGHRN-CVTVKGVNFFGP--KCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~~~~~~s~--~g~~l~~g~~dg~v~iwd~~~ 374 (471)
.... ....+|.. . +.+++| +| ++++|++|+.||.|++||++.
T Consensus 283 ---------------------~~~~~~~~~~h~~~~--v~~v~~-~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 ---------------------WKVFAKRALCHGVYE--INVVKW-LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---------------------EEEEEEESCTTTTSC--EEEEEE-C-----CCEEEEETTSEEEEEEC--
T ss_pred ---------------------eEEEeccccccccce--EEEEEE-ecCCCceEEEEecCCCcEEEEEecc
Confidence 0111 12245554 4 889998 88 789999999999999999864
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.4e-41 Score=310.31 Aligned_cols=309 Identities=13% Similarity=0.121 Sum_probs=246.3
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+ .+|...|.+++|+| ++++|++++.||.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeC--CCCEEEEEcCCCeEEEEE
Confidence 45699999999999999999999999999999999887 66666 78999999999999 999999999999999999
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
+.+++......+..|...|.+++|+|++ ..+++++.|+.|++||++.+........... .+...+.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKK------PIRSTVLSLDWHPN 153 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECT------TCCSCEEEEEECTT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeec------ccCCCeeEEEEcCC
Confidence 9887655554567799999999999999 5789999999999999998874332221110 14567999999998
Q ss_pred CCceEEEEeCCCeEEEEEcCCCccCCCCCC---CCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecC
Q 012064 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDF---GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~ 290 (471)
+.+|++++.||.|++||++.......... ...............|...|.+++|+|++++|++++ ++.|++||+.
T Consensus 154 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 154 -SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp -SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred -CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 68999999999999999865432211000 000001112233446788999999999999999888 6689999997
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
++ ..+..+..|... +.+++| +|+++++++| .|+.|++|
T Consensus 233 ~~--------------------------------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~-~d~~i~i~ 270 (372)
T 1k8k_C 233 KK--------------------------------------MAVATLASETLP--LLAVTF-ITESSLVAAG-HDCFPVLF 270 (372)
T ss_dssp GT--------------------------------------TEEEEEECSSCC--EEEEEE-EETTEEEEEE-TTSSCEEE
T ss_pred CC--------------------------------------ceeEEEccCCCC--eEEEEE-ecCCCEEEEE-eCCeEEEE
Confidence 63 345667777665 899999 9999999888 89999999
Q ss_pred EccC--Cee--------------------------------e------EEe-cCCCcceEEEEEc-CCC---CEEEEeec
Q 012064 371 KKKG--GEL--------------------------------I------RVI-EADRHVVNCIEPH-PHS---TVLASSGI 405 (471)
Q Consensus 371 d~~~--~~~--------------------------------~------~~~-~~h~~~v~~~~~s-~~~---~~l~s~~~ 405 (471)
++.+ ++. . ..+ .+|.+.|++++|+ ++| ++|++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~ 350 (372)
T 1k8k_C 271 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 350 (372)
T ss_dssp EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred EccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecC
Confidence 9987 421 0 223 4899999999976 676 99999999
Q ss_pred CCcEEEecCCCCC
Q 012064 406 ESDIKILTPNAAD 418 (471)
Q Consensus 406 dg~i~iw~~~~~~ 418 (471)
||.|++|++.+++
T Consensus 351 Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 351 DGGMSIWDVRSLE 363 (372)
T ss_dssp TSEEEEEEHHHHH
T ss_pred CCceEEEEecChh
Confidence 9999999997644
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-40 Score=314.49 Aligned_cols=309 Identities=20% Similarity=0.238 Sum_probs=252.4
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEE
Q 012064 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 7 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~ 86 (471)
..+++++++|+.||+|++||+++++.+ ..+.+|.+.|.+++|+|++ +|++|+.||+|+
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~---------------------~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFL---------------------LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEE---------------------EEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEE---------------------EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 346789999999999999999988766 6788999999999999988 999999999999
Q ss_pred EEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce---------------------eeE
Q 012064 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE---------------------TKL 145 (471)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~ 145 (471)
+||+.+++.+..+ .+|...|.+++|+|..++.++++++.||.|++||+.+..... ...
T Consensus 187 vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 187 VWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 9999999987777 789999999999964488999999999999999998765431 234
Q ss_pred eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
+.+|...+.++ ++++ ..+++++.|+.|++||+++++....+.. +...+.+++|+|+ +.++++|+.|
T Consensus 266 ~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~sg~~d 331 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSG----------HTDRIYSTIYDHE-RKRCISASMD 331 (464)
T ss_dssp ECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEETT-TTEEEEEETT
T ss_pred ccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCCEEEEEEcCC-CCEEEEEeCC
Confidence 66788888877 4566 5789999999999999999887766643 5557999999998 6899999999
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCcc
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVS 304 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~ 304 (471)
|.|++||+++++.. .....|...|.+++|+ +++|++++ ++.|++||+.++.
T Consensus 332 g~i~vwd~~~~~~~---------------~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~----------- 383 (464)
T 3v7d_B 332 TTIRIWDLENGELM---------------YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS----------- 383 (464)
T ss_dssp SCEEEEETTTTEEE---------------EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-----------
T ss_pred CcEEEEECCCCcEE---------------EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc-----------
Confidence 99999999887632 2345678889999997 46888877 6799999997631
Q ss_pred ccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEE-ecC
Q 012064 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEA 383 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~ 383 (471)
..... .+... +..++| +++++++++|+ ||.|++||+.+++.+.. +..
T Consensus 384 ---------------------------~~~~~-~~~~~--~~~~~~-~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 384 ---------------------------RKFSY-HHTNL--SAITTF-YVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp ---------------------------EEEEE-ECTTC--CCEEEE-EECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred ---------------------------eeeee-cCCCC--ccEEEE-EeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 11111 12222 556677 99999999998 89999999999999876 677
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 384 DRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
|.+.|.+++|+ +..++++++.||.+.+|-
T Consensus 432 ~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 432 DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 89999999997 445666667777766654
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-42 Score=323.00 Aligned_cols=334 Identities=15% Similarity=0.206 Sum_probs=248.9
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEe-ccccccEEEEEEcC-CCCEEEEecC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNT-DGDILISGSD 81 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~-~g~~l~s~~~ 81 (471)
..|+|+++.+++++ .|+.+ ++++ ..+ .+|.+.|++++|+| ++++|++|+.
T Consensus 33 ~~f~~~~~~~~~~~------~w~~~-g~~~---------------------~~~~~~h~~~V~~~~~s~~~~~~l~s~s~ 84 (437)
T 3gre_A 33 KEFGPIQEIVRSPN------MGNLR-GKLI---------------------ATLMENEPNSITSSAVSPGETPYLITGSD 84 (437)
T ss_dssp GGGCCCCCCCCCCC------GGGCC-CCEE---------------------EEECTTTTSCEEEEEEECSSSCEEEEEET
T ss_pred hhcCCccccccccc------ccccc-ceEE---------------------eeeccCCCCceEEEEECCCCCCEEEEecC
Confidence 34677777777665 37744 5544 567 89999999999999 9999999999
Q ss_pred CCeEEEEECCC---Cc---eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc---ccCcceeeEeec----
Q 012064 82 DRRVILWDWKT---ER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL---ERGGVETKLLGK---- 148 (471)
Q Consensus 82 d~~i~iwd~~~---~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~---- 148 (471)
||+|++||+.+ +. ....+ +|...|.+++|+| ++++|++++.||.|++||+. .++.... ...
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~i~ 158 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKF--LNCECIR 158 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEE--EEEEEEE
T ss_pred CceEEEeECcccccCcccceeeec--cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeec--cccceeE
Confidence 99999999876 43 22232 5999999999999 99999999999999999995 3333221 221
Q ss_pred --------eeeeEEEEE--EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 149 --------HQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 149 --------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
+...+.++. +++++ .++++++.|+.|++||+++++....+.... +...|.+++|+|+ +.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------h~~~v~~~~~s~~-~~~ 228 (437)
T 3gre_A 159 KINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSP--------RHGAVSSICIDEE-CCV 228 (437)
T ss_dssp EEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCG--------GGCCEEEEEECTT-SCE
T ss_pred EEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCC--------CCCceEEEEECCC-CCE
Confidence 334455555 44666 689999999999999999998887776421 3457999999999 789
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc----CCCCeEEEee-CCcEEEEecCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS----DQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
|++|+.||.|++||+++++... .....+...|.+++|+ |++++|++++ ++.|++||+.++.
T Consensus 229 l~s~~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 229 LILGTTRGIIDIWDIRFNVLIR--------------SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEEEETTSCEEEEETTTTEEEE--------------EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEEEcCCCeEEEEEcCCccEEE--------------EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 9999999999999999865321 1222456789999665 4677899888 5589999998765
Q ss_pred CCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec--CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE
Q 012064 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (471)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd 371 (471)
....+...... .....+.++++.+ ....+.+ |... |.+++| + ++++|++|+.||.|++||
T Consensus 295 ~~~~~~~~~~~--~~~~~~~~~~~~l------------~~~~~~~~~~~~~--v~~l~~-~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 295 CQYAFINSDEQ--PSMEHFLPIEKGL------------EELNFCGIRSLNA--LSTISV-S-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEESSSSC--CCGGGGSCBCSSG------------GGCCCCCCCSGGG--GCCEEE-E-TTEEEEEEGGGTEEEEEE
T ss_pred EEEEEEcCCCC--Cccceeccccccc------------ccceecccccCCc--eEEEEE-C-CceEEEecCCCCeEEEEE
Confidence 44332221111 1111122222221 1112334 5554 899999 7 789999999999999999
Q ss_pred ccCCeeeEEecC-------------------------------------CCcceEEEEEcCC--CCEEEEeecCCcEEEe
Q 012064 372 KKGGELIRVIEA-------------------------------------DRHVVNCIEPHPH--STVLASSGIESDIKIL 412 (471)
Q Consensus 372 ~~~~~~~~~~~~-------------------------------------h~~~v~~~~~s~~--~~~l~s~~~dg~i~iw 412 (471)
+.+++....+.+ |...|++++|+++ +.+|++++.||.|+||
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 999887776665 7889999999998 7799999999999999
Q ss_pred c
Q 012064 413 T 413 (471)
Q Consensus 413 ~ 413 (471)
+
T Consensus 437 ~ 437 (437)
T 3gre_A 437 Q 437 (437)
T ss_dssp C
T ss_pred C
Confidence 6
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.8e-41 Score=311.83 Aligned_cols=332 Identities=16% Similarity=0.186 Sum_probs=251.2
Q ss_pred CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEecCCCeEEEEECCCCceEE
Q 012064 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKL 97 (471)
Q Consensus 19 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~ 97 (471)
++.+++|+.++++.. ..+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++...
T Consensus 22 ~~~~~v~~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 80 (408)
T 4a11_B 22 ESTRRVLGLELNKDR---------------------DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS 80 (408)
T ss_dssp HHHHHHHTEEECTTE---------------------EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS
T ss_pred cCcceeeccccCcce---------------------eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 455677777765554 67889999999999999 99999999999999999999876544
Q ss_pred Eee------------cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC--
Q 012064 98 SFH------------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP-- 163 (471)
Q Consensus 98 ~~~------------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 163 (471)
.+. .+|...|.+++|+|. ++.+|++++.||.|++||+.+++.... + .+...+.++.++|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 81 YYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADV--F-NFEETVYSHHMSPVSTKH 156 (408)
T ss_dssp CEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECSSCSSC
T ss_pred eEeccccccccccccccCCCcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCcccee--c-cCCCceeeeEeecCCCCC
Confidence 432 259999999999982 456899999999999999988766543 3 3678899999998643
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC-CCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD-GST 242 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~ 242 (471)
.++++++.|+.|++||+++++....+.. +...|.+++|+|++..++++++.||.|++||++..... ...
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQG----------HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL 226 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEECC----------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeecC----------CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccc
Confidence 3889999999999999999887766653 55689999999996557999999999999999876421 111
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
.................|...|.+++|+|++++|++++ ++.+++||+.++..........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------------- 287 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV------------------- 287 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC-------------------
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc-------------------
Confidence 11111111222334456788999999999999999888 6689999998865433211000
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 401 (471)
....... +..... ...+..+++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|+
T Consensus 288 --------------~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 288 --------------CNNSKKG--LKFTVS-CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp --------------CCCCSSC--CCCEEC-CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred --------------ccccccc--ceeEEe-cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 0000000 111111 33455666777899999999999999999999999999999999999999
Q ss_pred EeecCCcEEEecCCCCCCcc
Q 012064 402 SSGIESDIKILTPNAADRAT 421 (471)
Q Consensus 402 s~~~dg~i~iw~~~~~~~~~ 421 (471)
+++.||.|++|++.+.+...
T Consensus 351 s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEETTSCEEEEEECC-----
T ss_pred EECCCCeEEEEeCCCCCccC
Confidence 99999999999999877643
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-40 Score=312.73 Aligned_cols=296 Identities=14% Similarity=0.159 Sum_probs=240.0
Q ss_pred ccccccEEEEEEcCCCC-EEEEecCCCeEEEEEC----CCCc------eEEEeec---------CCCcceeEEEEecCCC
Q 012064 58 DKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW----KTER------VKLSFHS---------GHNDNVFQAKIMPFTD 117 (471)
Q Consensus 58 ~~h~~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~----~~~~------~~~~~~~---------~~~~~v~~~~~~~~~~ 117 (471)
..|.+.|.+++|+|+|+ +||+|+.||.|++||+ .+++ ....+.. +|.+.|.+++|+| +
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--D 119 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT--T
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC--C
Confidence 45669999999999999 9999999999999999 8887 3444421 1678999999999 9
Q ss_pred CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc
Q 012064 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (471)
Q Consensus 118 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (471)
+++|++++.||.|++|| .+++... .+..|...|.+++|+|++ ..+++++.|+.|++||+++++....+........
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLN--VLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEE--EECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeee--eccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999999 3444433 377899999999999999 5789999999999999999887776654221100
Q ss_pred -----CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC
Q 012064 198 -----RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (471)
Q Consensus 198 -----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (471)
........+.+++|+|+ ..+++++.+|.|++||+++.+. ......|...|.+++|+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTP---------------TGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp ----------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSC---------------SEEECCCSSCEEEEEEETT
T ss_pred ceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCce---------------eeeeccCCCceEEEEECCC
Confidence 00001112888999997 4688999999999999987642 2334457788999999999
Q ss_pred CCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 273 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
+++|++++ ++.|++||+..+ .....+.+|... +.+++|
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~--------------------------------------~~~~~~~~~~~~--i~~~~~- 297 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNG--------------------------------------NSQNCFYGHSQS--IVSASW- 297 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSB--------------------------------------SCSEEECCCSSC--EEEEEE-
T ss_pred CCEEEEEcCCCEEEEEECCCC--------------------------------------ccceEecCCCcc--EEEEEE-
Confidence 99999988 668999998763 345666677765 899999
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|++.+++
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999 99999999999999999999999999999999999999999999999999999999998765
No 59
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-39 Score=304.75 Aligned_cols=284 Identities=16% Similarity=0.253 Sum_probs=229.5
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
++++++ +.||+|. |++|+|||.++|++.. ...+.+|.+.|++++|+|+|++||+|+.||
T Consensus 111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-------------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-------------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp EEECTT-SEEEEEE-TTEEEEEETTTCCEEE-------------------EEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCC-CEEEEEe-CCEEEEEECCCCCEEE-------------------EEEecCCCCcEEEEEECCCCCEEEEEECCC
Confidence 456665 4777776 9999999999998762 124557889999999999999999999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
+|+|||+.+++.+..+ .+|...+.++.| ++..+++++.|+.+++||........ ..+.+|...+..+.++|++
T Consensus 170 ~v~iWd~~~~~~~~~~-~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~-~~~~~h~~~~~~~~~~~~g- 242 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG- 242 (420)
T ss_dssp CEEEEETTTTEEEEEE-CCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-
T ss_pred eEEEEEcCCCcEEEEE-eCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceee-EEecccccceeeeeecCCC-
Confidence 9999999999998877 799999998877 45799999999999999987765433 3478899999999999999
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE--eCCCeEEEEEcCCCccCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--GSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i~d~~~~~~~~~ 241 (471)
..+++++.|+.+++||..+++........ ...+...|.+++|+|.++.+++++ +.|+.|++||+++++..
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-- 314 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQT------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-- 314 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCCSEE------ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE--
T ss_pred CeeeeeeccccceEEeeccccccceeeee------ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc--
Confidence 57899999999999999887643211100 011556789999999877777664 47899999998765310
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
T Consensus 315 -------------------------------------------------------------------------------- 314 (420)
T 4gga_A 315 -------------------------------------------------------------------------------- 314 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee--CCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 399 (471)
..+..+.. +.++.| +|+++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+|||++
T Consensus 315 ------------~~~~~~~~---v~~~~~-~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~ 378 (420)
T 4gga_A 315 ------------SAVDAHSQ---VCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378 (420)
T ss_dssp ------------EEEECSSC---EEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred ------------eeeccccc---eeeeee-cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 11111111 667777 88888887654 7899999999999999999999999999999999999
Q ss_pred EEEeecCCcEEEecCCCCCC
Q 012064 400 LASSGIESDIKILTPNAADR 419 (471)
Q Consensus 400 l~s~~~dg~i~iw~~~~~~~ 419 (471)
|+||+.|++|+|||+....+
T Consensus 379 l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 379 VASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEEEETTTEEEEECCSCSSC
T ss_pred EEEEecCCeEEEEECCCCCc
Confidence 99999999999999976554
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-40 Score=306.14 Aligned_cols=318 Identities=10% Similarity=0.128 Sum_probs=243.9
Q ss_pred EeccccccEEEEEEcCC----CCEEEEecCCCeEEEEECCCCceEEEee----cCCCcceeEEEEecCCC----CeEEEE
Q 012064 56 KLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTD----DRSIVT 123 (471)
Q Consensus 56 ~l~~h~~~V~~~~~s~~----g~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~----~~~l~s 123 (471)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+. ..|...|.+++|+| + +.+|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEEE
Confidence 44589999999999984 4556666667799999999887765552 13668899999999 7 789999
Q ss_pred EeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc-CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCccee
Q 012064 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
++.||.|++||+.+++.... +.+|...|.+++|+| ++ .++++++.||.|++||+++++....+..... +
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 160 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-------H 160 (366)
T ss_dssp EETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEECSTTS-------C
T ss_pred ecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEeccccc-------c
Confidence 99999999999988776654 778999999999999 66 6899999999999999999887666532111 5
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCC----C---------CCCCcCCCCcccCCCccceEEEEE
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF----G---------QPADYFCPPNLIGDEQVGITGLAF 269 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~~~~~i~~~~~ 269 (471)
...|.+++|+|+ +.+|++++.||.|++||+++.+....... . ..............|...|.+++|
T Consensus 161 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 161 RDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred cCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 568999999998 78999999999999999997653321100 0 000000111122347888999999
Q ss_pred cCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeee
Q 012064 270 SDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348 (471)
Q Consensus 270 ~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (471)
+ ++++++++ ++.|++||+.+......... ...........+.+|... +.++
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~--v~~~ 291 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIK------------------------PSESNVTILGRFDYSQCD--IWYM 291 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCC------------------------TTCCCEEEEEEEECSSCC--SSCC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccc------------------------cCCcchheeccccccCCc--EEEE
Confidence 9 66888877 67999999987543211000 000112335667777766 8899
Q ss_pred eeeCCC--CcEEEEeeCCCeEEEEEccCCee----eEEecCC--CcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 349 NFFGPK--CEYVVSGSDCGRIFIWKKKGGEL----IRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 349 ~~~s~~--g~~l~~g~~dg~v~iwd~~~~~~----~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+| +|+ +++|++|+.||.|++||+.+++. ...+.+| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 292 ~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 292 RF-SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CC-EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EE-cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 98 999 99999999999999999988753 3477777 7899999999999999999999999999985
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-41 Score=316.73 Aligned_cols=301 Identities=13% Similarity=0.204 Sum_probs=244.1
Q ss_pred ccccEEEEEEcCCCC-EEEEe----------cCCCeEEEEECCCCc---eEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 60 HRGCVNTVSFNTDGD-ILISG----------SDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 60 h~~~V~~~~~s~~g~-~l~s~----------~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
+...|.+++|+|+|+ +|++| +.|+.|++||+.+++ .+.. ..|...|.+++|+| ++++|++++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~--~~~~l~~~~ 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSH--NNKIIAGAL 86 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECS--SSSCEEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECC--CCCeEEEEc
Confidence 345688999999997 99999 889999999999876 3233 36889999999999 999999999
Q ss_pred CCCeEEEEecccc--CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc------cceeeeecccCCc
Q 012064 126 ADGQVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA------ATELFTCRPIDDR 197 (471)
Q Consensus 126 ~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~ 197 (471)
.||.|++|++... .......+.+|...|.+++|+|++..++++++.|+.|++||+++++ ....+..
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------ 160 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ------ 160 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC------
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc------
Confidence 9999999999872 1123344778999999999999844789999999999999999876 2222110
Q ss_pred CcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC-CeE
Q 012064 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELL 276 (471)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 276 (471)
...+...+.+++|+|+++.++++++.||.|++||+++.+....... .....+|...+.+++|+|++ .++
T Consensus 161 -~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 161 -SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY---------TSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp -SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC---------CCCSSCCCCCEEEEEECSSCTTEE
T ss_pred -ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec---------cccccccCCceEEEEECCCCCCEE
Confidence 0115568999999998778999999999999999998764322111 11112336789999999997 578
Q ss_pred EEee-CC---cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeeee
Q 012064 277 VSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFF 351 (471)
Q Consensus 277 ~~~~-~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 351 (471)
++++ ++ .|++||++++. .....+. +|... +.+++|
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~-------------------------------------~~~~~~~~~~~~~--v~~~~~- 270 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNAN-------------------------------------TPLQTLNQGHQKG--ILSLDW- 270 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTT-------------------------------------SCSBCCCSCCSSC--EEEEEE-
T ss_pred EEEECCCCCceEEEEeCCCCC-------------------------------------CCcEEeecCccCc--eeEEEe-
Confidence 8877 44 89999998742 2334455 67665 999999
Q ss_pred CC-CCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCC-CEEEEeecCCcEEEecCCCCCCc
Q 012064 352 GP-KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 352 s~-~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
+| ++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++|++++.|+.|++|++......
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 98 99999999999999999999999999999999999999999999 79999999999999999887653
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-40 Score=335.50 Aligned_cols=321 Identities=14% Similarity=0.177 Sum_probs=261.3
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++||+|+.||.|+|||.++++.+ ..+.+|.++|.+++|+|++++|++|+.
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 75 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSD 75 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceE---------------------EEEecCCCcEEEEEEeCCCCEEEEEeC
Confidence 35789999999999999999999999988766 678899999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc-
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP- 160 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~- 160 (471)
||.|++||+.+++.+..+ .+|.+.|.+++|+| ++++|++++.||.|++||+.++.... ..+.+|...|.+++|+|
T Consensus 76 dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEE-EEEECCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEE-EEEcCCCCcEEEEEEEcC
Confidence 999999999999988877 78999999999999 99999999999999999998763322 34778999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC--CCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
++ ..+++++.||.|++||++++.....+... +...+.+++|+| + +.++++++.||.|++||+++++.
T Consensus 152 ~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 152 DP-STFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp EE-EEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEE
T ss_pred CC-CEEEEEeCCCeEEEEECCCCcceeEEecC---------CCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcE
Confidence 55 68999999999999999988776665532 224689999999 6 68999999999999999987653
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
. .....|...|.+++|+|++++|++++ ++.|++||+.++
T Consensus 221 ~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~------------------------- 260 (814)
T 3mkq_A 221 V---------------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY------------------------- 260 (814)
T ss_dssp E---------------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------------------
T ss_pred E---------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------
Confidence 2 23345678899999999999999988 678999999764
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc--EEEEeeCCCeEEEEEccCCee----------e-------
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFIWKKKGGEL----------I------- 378 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~--~l~~g~~dg~v~iwd~~~~~~----------~------- 378 (471)
.....+..+... +.+++| +|+++ ++++++ ++.+.+|++..+.. +
T Consensus 261 -------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (814)
T 3mkq_A 261 -------------KVEKTLNVGLER--SWCIAT-HPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA 323 (814)
T ss_dssp -------------SEEEEECCSSSS--EEEEEE-CTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred -------------cEEEEeecCCCc--EEEEEE-ccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence 234455555554 778887 88876 455544 56677777643211 1
Q ss_pred --------------------------EEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 379 --------------------------RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 379 --------------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
..+..+...+.+++|+|+|+++++++ |+.+.+|++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred cceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 11123444678899999999888887 88899998754
No 63
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-40 Score=329.05 Aligned_cols=303 Identities=17% Similarity=0.221 Sum_probs=232.0
Q ss_pred CCCCCCC-CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 3 DASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 3 ~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+++++++ +.+|++|+.||+|++|++.++... .....+.+.+|...|.+++|+|++++|++|+.
T Consensus 387 ~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 387 AIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 4567776 478999999999999999865432 11233678899999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee-eEeeceeeeEEEEEEcc
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~ 160 (471)
|++|+|||+.+++....+ .+|...|.+++|+| ++++|++++.|++|++||......... ....+|...|.+++|+|
T Consensus 451 Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred CCcEEEEECCCCcceeEE-eCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 999999999999988777 79999999999999 999999999999999999754322111 11246888999999999
Q ss_pred CCC-cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccC
Q 012064 161 GSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 161 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
++. ..+++++.|+.|++||+++++....+.. |...|.+++|+|+ +.+|++++.||.|++||+++++..
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceE
Confidence 862 4789999999999999999887666543 5568999999998 789999999999999999987643
Q ss_pred CCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
.. . .+...+.+++|+|++.+|+++.++.|++||++++.....+..........
T Consensus 597 ~~---------------~-~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~----------- 649 (694)
T 3dm0_A 597 YS---------------L-EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK----------- 649 (694)
T ss_dssp EC---------------C-BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred EE---------------e-cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccc-----------
Confidence 21 1 12456999999999999999999999999998764332211000000000
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
.. ....... ......+.+++| +|+|++|++|+.||.|++|++.
T Consensus 650 ----~~----~~~~~~~--~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 ----AD----NSGPAAT--KRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---------------------CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred ----cc----ccccccC--CceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEecc
Confidence 00 0000000 111112778998 9999999999999999999985
No 64
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-41 Score=314.01 Aligned_cols=249 Identities=12% Similarity=0.106 Sum_probs=193.8
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccC--ccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELG--QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s 78 (471)
+.+++|+|++++|++|+.||.|++||++++ +.. ..+.+|.+.|.+++|+|++++|++
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA---------------------RTFSDHDKIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC---------------------CCBCCCSSCEEEEEECTTTCCEEE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE---------------------EEEecCCceEEEEEEeCCCCEEEE
Confidence 457889999999999999999999999976 333 578899999999999999999999
Q ss_pred ecCCCeEEEEECCCCc---eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc-eeeEeec-eeeeE
Q 012064 79 GSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGK-HQGRA 153 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~-~~~~v 153 (471)
++.|++|++||+.+++ ....+ .+|...|.+++|+| ++++|++++.|+.|++||+..++.. ....+.. |...|
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v 149 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI 149 (377)
T ss_dssp EETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence 9999999999999877 44444 68999999999999 9999999999999999999887631 1233566 99999
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCcccee------------eeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL------------FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
.+++|+|++ .++++++.|+.|++||++....... ....... .+...|.+++|+|+ +.+|++
T Consensus 150 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~-~~~l~~ 222 (377)
T 3dwl_C 150 LSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-----PSGGWVHAVGFSPS-GNALAY 222 (377)
T ss_dssp EEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-----CCSSSEEEEEECTT-SSCEEE
T ss_pred EEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-----cCCceEEEEEECCC-CCEEEE
Confidence 999999998 5889999999999999964432111 0000000 25667999999998 689999
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
++.||.|++||+++.+... ........|...|.+++|+|++++|++++++.+.+|+...
T Consensus 223 ~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 223 AGHDSSVTIAYPSAPEQPP-----------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp EETTTEEC-CEECSTTSCE-----------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred EeCCCcEEEEECCCCCCcc-----------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 9999999999999875310 0023345677889999999999999999988888998764
No 65
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=288.14 Aligned_cols=283 Identities=16% Similarity=0.235 Sum_probs=223.9
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+++|+++ +||+|. |++|+|||.++|+++. ...+.+|...|++++|+|++++||+|+.||
T Consensus 31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~-------------------~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQ-------------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp EEECTTS-EEEEEE-TTEEEEEETTTCCEEE-------------------EEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCCC-EEEEEe-CCEEEEEECCCCCEEE-------------------EEEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence 5678776 677765 9999999999998772 123457889999999999999999999999
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
+|++||+++++.+..+ .+|...+.++.+ ++..+++++.++.+++|+........ ..+.+|...+..+.+.+++
T Consensus 90 ~v~iw~~~~~~~~~~~-~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 162 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG- 162 (318)
T ss_dssp EEEEEETTTTEEEEEE-ECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-
T ss_pred cEEEeecCCceeEEEe-cCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeE-EEEcCccCceEEEEEcCCC-
Confidence 9999999999998877 789888877655 56799999999999999987765433 3477899999999999999
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE--EEEeCCCeEEEEEcCCCccCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF--AVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l--~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
..+++++.|+.|++||+++++......... ..+...+.+++++|+++..+ ++++.++.|++||.+.....
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-- 234 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-- 234 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEE------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--
T ss_pred CEEEEEecCcceeEEECCCCcccccceeee------cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--
Confidence 578999999999999999876443221111 01445688888888865554 34567788888887653210
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
T Consensus 235 -------------------------------------------------------------------------------- 234 (318)
T 4ggc_A 235 -------------------------------------------------------------------------------- 234 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe--eCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCE
Q 012064 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG--SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399 (471)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g--~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 399 (471)
. ...+... +..+.| +|+++.++++ +.|+.|++||+.+++++..+.+|.+.|++++|+|++++
T Consensus 235 ------------~-~~~~~~~--v~~~~~-~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 235 ------------S-AVDAHSQ--VCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298 (318)
T ss_dssp ------------E-EEECSSC--EEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred ------------c-cccceee--eeeeee-cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 0 0011111 666777 7888877654 47999999999999999999999999999999999999
Q ss_pred EEEeecCCcEEEecCCCCC
Q 012064 400 LASSGIESDIKILTPNAAD 418 (471)
Q Consensus 400 l~s~~~dg~i~iw~~~~~~ 418 (471)
|+|++.||+|+|||+.+..
T Consensus 299 l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 299 VASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEETTTEEEEECCSCCC
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999997643
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.6e-40 Score=302.20 Aligned_cols=320 Identities=14% Similarity=0.143 Sum_probs=238.9
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
+.+++++|++++|++|+.||.|++||.++++. .....+.+|...|.+++|+|++++|++++
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------EEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------EeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence 35678999999999999999999999997651 12367889999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc--eeeEeeceeeeEEEEE
Q 012064 81 DDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLA 157 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~ 157 (471)
.|+.|++||+.+++..... ...|...|.+++|+| ++++|++++.||.|++||+...... .......|...|.+++
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence 9999999999888754443 257899999999999 9999999999999999999887642 2222456889999999
Q ss_pred EccCCCcEEEEEecCCeEEEEecc------------------CCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLR------------------TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
|+|++ .++++++.||.|++||++ .++....+.. +...+.+++|+|+ +.+|
T Consensus 150 ~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l 217 (372)
T 1k8k_C 150 WHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----------SCGWVHGVCFSAN-GSRV 217 (372)
T ss_dssp ECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----------CSSCEEEEEECSS-SSEE
T ss_pred EcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC----------CCCeEEEEEECCC-CCEE
Confidence 99998 578999999999999965 3333333321 5567999999998 6899
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC--CC--CC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM--GL--GP 295 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~--~~--~~ 295 (471)
++++.||.|++||+++.+.. .....|...+.+++|+|++++++++.++.+++|++.. +. ..
T Consensus 218 ~~~~~d~~i~i~d~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKMAV---------------ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp EEEETTTEEEEEEGGGTTEE---------------EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEEC
T ss_pred EEEeCCCEEEEEECCCCcee---------------EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEe
Confidence 99999999999999876532 2334567789999999999999999888999999987 31 11
Q ss_pred CCCCCCCccccccccccCCCCCCccCCCCCCcccccC------CeeeecCCceeEeeeeeeeCCCC---cEEEEeeCCCe
Q 012064 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA------PQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGR 366 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~s~~g---~~l~~g~~dg~ 366 (471)
..+......... ....+......+...... .....+|... |.+++|++++| ++|++|+.||.
T Consensus 283 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~g~~~~~l~s~~~Dg~ 353 (372)
T 1k8k_C 283 GRLDVPKQSSQR-------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS--VSQISVLSGGKAKCSQFCTTGMDGG 353 (372)
T ss_dssp CCCCCC---------------CHHHHHHHCCCCC---------CCCSSSSSSC--EEEEEEEESTTTSCSEEEEEETTSE
T ss_pred eccCccccchhh-------hcchhhhhhhcccccccccCccccccccccccCC--cceeEEecCCCcceeeEEEecCCCc
Confidence 111100000000 000000000000000000 1222477776 99999757888 99999999999
Q ss_pred EEEEEccCCee
Q 012064 367 IFIWKKKGGEL 377 (471)
Q Consensus 367 v~iwd~~~~~~ 377 (471)
|++||+.+++.
T Consensus 354 i~~W~~~~~~~ 364 (372)
T 1k8k_C 354 MSIWDVRSLES 364 (372)
T ss_dssp EEEEEHHHHHH
T ss_pred eEEEEecChhH
Confidence 99999977543
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-39 Score=287.83 Aligned_cols=270 Identities=16% Similarity=0.247 Sum_probs=204.5
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 132 (471)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+ +.+..+ .+|.+.|.+++|+|..++++|++++.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 457899999999999999999999999999999999753 455555 79999999999986223889999999999999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEEccC--CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
||+.+++......+..|...|.+++|+|+ + .++++++.|+.|++||++++......... + |...|.+++
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~------~--h~~~v~~~~ 152 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIID------A--HAIGVNSAS 152 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEE------C--CSSCEEEEE
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeee------c--ccCccceEe
Confidence 99987754444447789999999999997 5 57899999999999999876432111111 1 556799999
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEec
Q 012064 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~ 289 (471)
|+|++... ++. . ...+++++|++++ |+.|++||+
T Consensus 153 ~~p~~~~~------~~~--------~-------------------------------~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 153 WAPATIEE------DGE--------H-------------------------------NGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp ECCCC---------------------------------------------------------CCEEEEEETTSCEEEEEE
T ss_pred ecCCcccc------ccc--------C-------------------------------CCCCCcceEEEEcCCCcEEEEEE
Confidence 99973100 000 0 0012455666666 556777776
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC---cEEEEeeCCCe
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGR 366 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g---~~l~~g~~dg~ 366 (471)
+.+... ......+.+|... |.+++| +|++ ++|++|+.|++
T Consensus 188 ~~~~~~----------------------------------~~~~~~l~~H~~~--V~~v~~-sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 188 NSDAQT----------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp ETTTTE----------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSSSEEEEEEETTSC
T ss_pred cCCCce----------------------------------EEEEEEecCCCCc--eEEEEE-CCCCCCceEEEEEECCCc
Confidence 543100 1123466788876 999999 9984 89999999999
Q ss_pred EEEEEccCCe---eeEEe--cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 367 IFIWKKKGGE---LIRVI--EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 367 v~iwd~~~~~---~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
|++||+.+.. ....+ ..|...|.+++|+|++++||+++.|+.|++|+...
T Consensus 231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999997643 12233 46788999999999999999999999999999764
No 68
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.9e-39 Score=291.14 Aligned_cols=276 Identities=18% Similarity=0.286 Sum_probs=231.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec--cccccEEEEEEcCCCCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD--KHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~~g~~l~s~ 79 (471)
..++++|+++++++++ ||.|++||+++++... ....+. +|...|.+++|+|++++|+++
T Consensus 55 ~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (337)
T 1gxr_A 55 CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred EEEEEecCCcEEEEcC-CCeEEEEECCCCCcee------------------eeecccccCCCCcEEEEEEcCCCCEEEEE
Confidence 4577899999999999 9999999999776442 112233 799999999999999999999
Q ss_pred cCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 80 SDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
+.|+.|++||+.+++ ....+ ..|...|.+++|+| +++++++++.||.|++||+.+++.... +..|...+.+++
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~--~~~~~~~i~~~~ 190 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCID 190 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEE
T ss_pred cCCCcEEEEECCCCCcceeeec-ccCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeee--eecccCceEEEE
Confidence 999999999999877 33344 68999999999999 999999999999999999988765544 778999999999
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
|+|++ ..+++++.|+.|++||+++++....+. +...+.+++|+|+ +.++++++.++.|++||+++.+
T Consensus 191 ~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-----------~~~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 191 ISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-----------FTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp ECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSC
T ss_pred ECCCC-CEEEEEecCCcEEEEECCCCceEeeec-----------CCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCC
Confidence 99998 578999999999999999988776654 4457899999999 6899999999999999998765
Q ss_pred cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
. .....|...+.+++|+|++++|++++ ++.+++|++.++.
T Consensus 258 ~----------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~----------------------- 298 (337)
T 1gxr_A 258 K----------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA----------------------- 298 (337)
T ss_dssp E----------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------
T ss_pred e----------------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe-----------------------
Confidence 2 22345678899999999999999888 6689999997742
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
.. ....|... +.+++| +|++++|++++.||.|++|++
T Consensus 299 ---------------~~-~~~~~~~~--v~~~~~-s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 299 ---------------SI-FQSKESSS--VLSCDI-SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---------------EE-EEEECSSC--EEEEEE-CTTSCEEEEEETTSCEEEEEE
T ss_pred ---------------EE-EEecCCCc--EEEEEE-CCCCCEEEEecCCCeEEEEEE
Confidence 11 22234444 889998 999999999999999999997
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-40 Score=302.14 Aligned_cols=290 Identities=10% Similarity=0.072 Sum_probs=219.3
Q ss_pred cccEEEEEEcCCCCEEEEecCC-------CeEEEEECCCCce--------EEE-eecCCCcceeEEEEecCCCCeEEEEE
Q 012064 61 RGCVNTVSFNTDGDILISGSDD-------RRVILWDWKTERV--------KLS-FHSGHNDNVFQAKIMPFTDDRSIVTC 124 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d-------~~i~iwd~~~~~~--------~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~ 124 (471)
.-||++++|+|||++|++||.+ +.|++|++..+.. ... .+.+|...+.++++. ++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIILVG 89 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEEEE
Confidence 4589999999999999998754 3699999875532 111 136788888888775 4555554
Q ss_pred -----------eCCCeEEEEeccccCcceeeE-------eeceeeeEEEEEEccCCCcEE-EEEecCCeEEEEeccCCcc
Q 012064 125 -----------AADGQVRHAQILERGGVETKL-------LGKHQGRAHKLAIEPGSPHVF-YTCGEDGLVQHFDLRTGAA 185 (471)
Q Consensus 125 -----------~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~ 185 (471)
+.|+.+++|++.......... ...+...+.+++|+|||+.++ ++++.|++|++||+++++.
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 457789999987654432110 112345588999999996432 3455799999999999988
Q ss_pred ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceE
Q 012064 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT 265 (471)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (471)
...+. +...|.+++|+|+ +.++++++.+ .+++|+..+++... ......|...|.
T Consensus 170 ~~~~~-----------~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~v~ 223 (365)
T 4h5i_A 170 KFEIE-----------TRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIA-------------RKTDFDKNWSLS 223 (365)
T ss_dssp EEEEE-----------CSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEE-------------EECCCCTTEEEE
T ss_pred EEEeC-----------CCCceEEEEEccC-CceEEeccce-eEEEEEeccCccee-------------eeecCCCCCCEE
Confidence 77665 4457999999999 6889888755 56677766554211 122345678899
Q ss_pred EEEEcCCCCeEEEee-CC----cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCC
Q 012064 266 GLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (471)
Q Consensus 266 ~~~~~~~~~~l~~~~-~~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (471)
+++|+|+++++++++ ++ .+++|++..... .......+.+|.
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~~~~~~ 269 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------------------------------SVLRSKQVTNRF 269 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------------------------------EEEEEEEEESSC
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeeccccccee----------------------------------cceeeeeecCCC
Confidence 999999999999887 43 477888765310 011234566777
Q ss_pred ceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe-cCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 341 ~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
.. |.+++| +|||++||+|+.|+.|+|||+.+++++..+ .+|...|++++|+|||++|||+|.|++|+||++...
T Consensus 270 ~~--V~~~~~-Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 270 KG--ITSMDV-DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CC--eEeEEE-CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 66 999999 999999999999999999999999999874 789999999999999999999999999999999754
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-39 Score=296.70 Aligned_cols=284 Identities=14% Similarity=0.196 Sum_probs=239.8
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++|++|+.||.|++||+.+++.+ ..+.+|.+.|.+++|+|++++|++++.
T Consensus 36 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 36 TQVKYNKEGDLLFSCSKDSSASVWYSLNGERL---------------------GTLDGHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp EEEEECTTSCEEEEEESSSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh---------------------hhhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence 35779999999999999999999999988766 678899999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-----CeEEEEeccccCccee---------eEee
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGVET---------KLLG 147 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~---------~~~~ 147 (471)
||.|++||+.+++.+..+. +...+.+++|+| +++++++++.+ |.|++||+........ ..+.
T Consensus 95 dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWK--SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp TTEEEEEETTTCCEEEEEE--CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred CCeEEEEECCCCcEEEEee--cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 9999999999999888873 888999999999 99999999998 9999999987654321 2234
Q ss_pred ceee--eEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 148 KHQG--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 148 ~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
.|.. .+.+++|+|++ ..+++++.||.|++||+++ .+....+.. +...+.+++|+|+ +.+|++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~ 238 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDL----------HEKSISDMQFSPD-LTYFITSSR 238 (369)
T ss_dssp CCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEEC----------CSSCEEEEEECTT-SSEEEEEET
T ss_pred CCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEec----------CCCceeEEEECCC-CCEEEEecC
Confidence 4444 89999999999 5789999999999999998 555555543 4557999999998 789999999
Q ss_pred CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC--------------cEEEEec
Q 012064 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--------------FIYLFTQ 289 (471)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--------------~i~i~d~ 289 (471)
||.|++||+++.+.... . .+...+..++|+|+++++++++ ++ .+++||.
T Consensus 239 d~~i~v~d~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVLKK---------------Y-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp TSEEEEEETTTCCEEEE---------------E-ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred CceEEEEECCCCceeee---------------e-cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 99999999988753221 1 1467799999999999998887 44 6888887
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
.++ .....+.+|... |.+++| +|++++|++++.||.|++
T Consensus 303 ~~~--------------------------------------~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 303 IFE--------------------------------------EEIGRVQGHFGP--LNTVAI-SPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp TTC--------------------------------------CEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEE
T ss_pred CCC--------------------------------------cchhheecccCc--EEEEEE-CCCCCEEEEEcCCCeEEE
Confidence 763 445677788776 999999 999999999999999999
Q ss_pred EEccCCeeeE
Q 012064 370 WKKKGGELIR 379 (471)
Q Consensus 370 wd~~~~~~~~ 379 (471)
|++..+....
T Consensus 342 w~~~~~~~~~ 351 (369)
T 3zwl_B 342 HHFEKSYFDF 351 (369)
T ss_dssp EEECHHHHTC
T ss_pred EECccccchh
Confidence 9998765443
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.6e-39 Score=326.52 Aligned_cols=298 Identities=17% Similarity=0.283 Sum_probs=255.1
Q ss_pred eeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 51 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
++..+.+.+|.+.|.+++|+|+|++||+|+.||.|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.||.|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFRI 79 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeC--CCCEEEEEeCCCeE
Confidence 4566889999999999999999999999999999999999999988877 68999999999999 99999999999999
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
++||+.+++.... +.+|...|.+++|+|+++ .+++++.||.|++||++++ .....+.. +...+.++
T Consensus 80 ~vw~~~~~~~~~~--~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~v~~~ 146 (814)
T 3mkq_A 80 RVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMCV 146 (814)
T ss_dssp EEEETTTCCEEEE--EECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEEC----------CSSCEEEE
T ss_pred EEEECCCCcEEEE--EecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcC----------CCCcEEEE
Confidence 9999988876655 788999999999999994 7899999999999999887 33344332 55679999
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC--CCCeEEEee-CCcEEE
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIYL 286 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~~~i~i 286 (471)
+|+|+++..+++++.||.|++||++..+.. .....++...+..++|+| ++.+|++++ ++.|++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 212 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPN--------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCS--------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999943789999999999999999875421 223334457899999999 899999888 668999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCe
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~ 366 (471)
||+.++ .....+.+|... +.+++| +|+++++++++.||.
T Consensus 213 ~d~~~~--------------------------------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~ 251 (814)
T 3mkq_A 213 WDYQTK--------------------------------------SCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDGT 251 (814)
T ss_dssp EETTTT--------------------------------------EEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSC
T ss_pred EECCCC--------------------------------------cEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCe
Confidence 998763 345667778776 899998 999999999999999
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCCE-EEEeecCCcEEEecCCCCCC
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV-LASSGIESDIKILTPNAADR 419 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~ 419 (471)
|++||+.+++.+..+..|...+.+++|+|+++. +++++.++.+.+|++.....
T Consensus 252 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 999999999999999999999999999999873 34455577899999876544
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=300.28 Aligned_cols=297 Identities=16% Similarity=0.282 Sum_probs=225.0
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------eEEEeecCCC------------cceeEEEEecC
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHN------------DNVFQAKIMPF 115 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~------------~~v~~~~~~~~ 115 (471)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+ .+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~- 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP- 103 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC-
Confidence 368999999999999999999999999999998876 34455 7898 8899999999
Q ss_pred CCC--eEEEEEeCCCeEEEEeccccCcce--------------------------------------eeEeeceeeeEEE
Q 012064 116 TDD--RSIVTCAADGQVRHAQILERGGVE--------------------------------------TKLLGKHQGRAHK 155 (471)
Q Consensus 116 ~~~--~~l~s~~~dg~i~iwd~~~~~~~~--------------------------------------~~~~~~~~~~v~~ 155 (471)
++ ..|++++.|+.|++||+.++.... .....+|...|.+
T Consensus 104 -~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 104 -QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp -CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred -CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 77 799999999999999997643310 0113579999999
Q ss_pred EEEccCCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
++|+|++ .+++++ .|+.|++||+++. +....+.... .... .+...|.+++|+|+++.+|++|+.||.|++||++
T Consensus 183 ~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~--~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 183 ISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKP-ANME--ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCC-SSGG--GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeeccc-cccc--ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 9999998 577887 7999999999843 3333221111 1111 1566899999999954899999999999999999
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCc------------cceEEEEEcCCCCeEEEeeCCcEEEEecCC-CCCCCCCCCC
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQ------------VGITGLAFSDQSELLVSYNDEFIYLFTQDM-GLGPNPPPSS 301 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~ 301 (471)
+.+.... .......+. ..|.+++|+|++++|++++++.|++||++. +.
T Consensus 258 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~-------- 318 (447)
T 3dw8_B 258 ASALCDR-----------HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENR-------- 318 (447)
T ss_dssp TCSSSCT-----------TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSS--------
T ss_pred CCccccc-----------eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcc--------
Confidence 8763110 012223333 389999999999999999899999999976 32
Q ss_pred CccccccccccCCCCCCccCCCCCCcccccCCeeeecCCcee-------------EeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-------------TVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
.+..+.+|.... .+..++| +|++++|++|+.||.|+
T Consensus 319 ------------------------------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 319 ------------------------------PVETYQVHEYLRSKLCSLYENDCIFDKFECCW-NGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp ------------------------------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE-CTTSSEEEEECSTTEEE
T ss_pred ------------------------------ccceeeccccccccccccccccccccceEEEE-CCCCCEEEEeccCCEEE
Confidence 233344443210 0334888 99999999999999999
Q ss_pred EEEccCCeeeEEecC---------------------------------CCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 369 IWKKKGGELIRVIEA---------------------------------DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 369 iwd~~~~~~~~~~~~---------------------------------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+||+.+++.+. +.+ +...|..++|+|++++||+++.++ +++|.-+
T Consensus 368 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 368 MFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred EEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 99999887653 222 235688999999999999998765 7777643
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.9e-40 Score=309.13 Aligned_cols=302 Identities=15% Similarity=0.157 Sum_probs=214.7
Q ss_pred CCCCCCC-CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEe
Q 012064 2 DDASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISG 79 (471)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~ 79 (471)
.+++|+| ++.+||+|+.||+|+|||+++++... ...+.+|.+.|++++|+| ++.+|++|
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-------------------~~~~~gH~~~V~~l~f~p~~~~~l~s~ 183 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-------------------FIKGIGAGGSITGLKFNPLNTNQFYAS 183 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-------------------EECCCSSSCCCCEEEECSSCTTEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-------------------EEEccCCCCCEEEEEEeCCCCCEEEEE
Confidence 3577888 56789999999999999998776441 234678999999999998 68999999
Q ss_pred cCCCeEEEEECCCCceEEEeecC--CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 80 SDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
+.||+|++||++++.. ..+... +...+.+++|+| ++++|++|+.||.|++||++.. .+.. +.+|...|.+++
T Consensus 184 s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~~-~~~~--~~~h~~~v~~v~ 257 (435)
T 4e54_B 184 SMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGK-ELWN--LRMHKKKVTHVA 257 (435)
T ss_dssp CSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBEEEEESSSC-BCCC--SBCCSSCEEEEE
T ss_pred eCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcEeeeccCcc-eeEE--EecccceEEeee
Confidence 9999999999986554 333233 344678999999 9999999999999999998643 3333 778999999999
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
|+|+++.++++++.|+.|++||+++.+....+.... .|...|.+++|+|+ +.+|++++.||.|++||+++.+
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~-------~h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL-------PHRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC-------BCSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSS
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEEEee-------eccccccceeECCC-CCeeEEEcCCCEEEEEECCCCc
Confidence 999998889999999999999999876554432211 15668999999998 7899999999999999998865
Q ss_pred cCCCCCCCCC--CCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C-CcEEEEecCCCCCCCCCCCCCccccccccccC
Q 012064 238 WDGSTDFGQP--ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (471)
Q Consensus 238 ~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (471)
.......... ................+..+.+++++..++... + +.|++||..++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~-------------------- 389 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK-------------------- 389 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--------------------
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--------------------
Confidence 3321110000 000000001111122233444444444433333 2 369999987752
Q ss_pred CCCCCccCCCCCCcccccCCeee-ecCCceeEeeee-eeeCCCCcEEEEeeCCCeEEEEEccCCeee
Q 012064 314 SDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGV-NFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (471)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~-~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~ 378 (471)
....+ .+|... |.++ +| +|+|++|++|+ |+.|+|||+++++..
T Consensus 390 ------------------~~~~l~~~~~~~--v~s~~~f-spdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 390 ------------------MMCQLYDPESSG--ISSLNEF-NPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ------------------EEEEECCSSCCC--CCCEEEE-CTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ------------------EEEEEeCCCCCc--EEEEEEE-CCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 22333 345544 7777 46 99999999886 789999999988653
No 74
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=296.92 Aligned_cols=349 Identities=15% Similarity=0.121 Sum_probs=232.2
Q ss_pred CCCCCCC-CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEe
Q 012064 2 DDASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISG 79 (471)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~ 79 (471)
.+++|+| ++++|++|+.||.|++||+++++.......... .........+|.+.|.+++|+| ++.+|+++
T Consensus 47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV--------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------EEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------ccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3567899 999999999999999999998776631110000 0000011246999999999999 77899999
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCC-CCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
+.||.|++||+.+++....+ .+...+.++.|+|.. ++.++++++.||.|++||+.+++.... +..|...|.+++|
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~v~~~~~ 194 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEILAVSW 194 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--ECCCCSCEEEEEE
T ss_pred eCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--ecCCCCcEEEEEE
Confidence 99999999999999887776 377889999999832 344899999999999999988876654 7889999999999
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCcc-ceeeeeccc-----CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPI-----DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
+|++++++++++.||.|++||++++.. ...+..... .......+...|.+++|+|+ +.+|++++.||.|++||
T Consensus 195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEE
Confidence 999976789999999999999988752 222211100 00001125668999999998 78999999999999999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
+++.+....... .................+.+.+++++.++.+++||+.++
T Consensus 274 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------------- 324 (408)
T 4a11_B 274 SSNGENTLVNYG---------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-------------------- 324 (408)
T ss_dssp TTTCCBCCCCCC---------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC--------------------
T ss_pred CCCCccceeccc---------cccccccccceeEEecCCCceEEEEecCCEEEEEECcCC--------------------
Confidence 998764322110 000011111122333344556677777889999999874
Q ss_pred CCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEE
Q 012064 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~ 392 (471)
..+..+.+|... |.+++| +|++++|++|+.||.|++||+.+++.+.....+.. ...
T Consensus 325 ------------------~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~ 380 (408)
T 4a11_B 325 ------------------EQITMLKGHYKT--VDCCVF-QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQ 380 (408)
T ss_dssp ------------------CEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEEECC------------------
T ss_pred ------------------cceeeeccCCCe--EEEEEE-cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccc
Confidence 455677788876 999999 99999999999999999999999887765543332 223
Q ss_pred EcC-CCCEEEEeecCCcEEEecCCC
Q 012064 393 PHP-HSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 393 ~s~-~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+.| +...+.+++.++.+++|+...
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 381 LNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -------------------------
T ss_pred cccccceeecccCccCceeecCCcc
Confidence 333 334566777899999998764
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-38 Score=289.81 Aligned_cols=290 Identities=10% Similarity=0.099 Sum_probs=237.2
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eEEEeecCCCcceeEEEEecCCCCe-EEEEEeCCCeE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQV 130 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i 130 (471)
....+|.+.|++++|+|++++|++++.|+.|++||+.+++ ....+ .+|...|.+++|+| +++ +|++++.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFID--NTDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEE--SSSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECC--CCCcEEEEEcCCCeE
Confidence 3456899999999999999999999999999999998877 23333 58999999999999 999 99999999999
Q ss_pred EEEec-cccCcceeeEeec--eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC---------CccceeeeecccCCcC
Q 012064 131 RHAQI-LERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---------GAATELFTCRPIDDRR 198 (471)
Q Consensus 131 ~iwd~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~ 198 (471)
++||+ .+++. ..+.. |...|.+++|+| + ..+++++.|+.|++||+++ ++....+.
T Consensus 82 ~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------- 148 (342)
T 1yfq_A 82 LKVDLIGSPSF---QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------- 148 (342)
T ss_dssp EEECSSSSSSE---EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--------
T ss_pred EEEEeccCCce---EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--------
Confidence 99999 77654 33677 999999999999 6 6889999999999999987 54443332
Q ss_pred cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeE
Q 012064 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELL 276 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 276 (471)
+...+.+++|+|+ + +++++.|+.|++||+++ .... .......+...+.+++|+| +++++
T Consensus 149 ---~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~-------------~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 149 ---VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDN-------------GTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp ---SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCC-------------CEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ---eCCceEEEEecCC-c--EEEEeCCCeEEEEECCcccccc-------------ceeeecCCCCceeEEEECCCCCCEE
Confidence 4457999999997 3 88999999999999987 4311 1223345677899999999 99999
Q ss_pred EEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc-------eeEeeee
Q 012064 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGV 348 (471)
Q Consensus 277 ~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 348 (471)
++++ ++.+++|+++....... ......+.+|.. ...+.++
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYN--------------------------------SSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTT--------------------------------CTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred EEEecCCcEEEEEEcCCCcccc--------------------------------cccceeeecccccccccccceeEEEE
Confidence 9888 66899999876410000 123445555543 1138999
Q ss_pred eeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCC-CcceEEEEEcCCCCEEEEeecCCc-EEEecC
Q 012064 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESD-IKILTP 414 (471)
Q Consensus 349 ~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~ 414 (471)
+| +|++++|++|+.||.|++||+.+++.+..+.+| .+.|.+++ |++++|++++.||. .+.|..
T Consensus 258 ~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 258 EF-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EE-cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99 999999999999999999999999999999998 99999999 99999999999998 666664
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-38 Score=296.13 Aligned_cols=280 Identities=18% Similarity=0.227 Sum_probs=227.4
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec-cccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
+..+++++.||.|++||.++++.. ..+. .|.+.|.+++|+|++++|++|+.||.|++|
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~---------------------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVS---------------------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEE---------------------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEe---------------------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 456888889999999999988866 2333 389999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 168 (471)
|+.+++.+..+ .+|...|.+++|+ ++++++++.||.|++||+....... ..+.+|...|.+++|+|++ ..+++
T Consensus 162 d~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~s 234 (401)
T 4aez_A 162 DVESQTKLRTM-AGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDG-LQLAS 234 (401)
T ss_dssp ETTTCCEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-SEEEE
T ss_pred ECcCCeEEEEe-cCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCccee-eEEcCCCCCeeEEEEcCCC-CEEEE
Confidence 99999988877 6999999999995 4699999999999999998544332 3477899999999999998 58899
Q ss_pred EecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe--CCCeEEEEEcCCCccCCCCCCCC
Q 012064 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFGQ 246 (471)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~ 246 (471)
++.|+.|++||+++++....+.. +...|.+++|+|++..++++++ .|+.|++||+++++....
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~----- 299 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTN----------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT----- 299 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECC----------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-----
T ss_pred EeCCCeEEEccCCCCCccEEecC----------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-----
Confidence 99999999999999877665543 5557999999998778888876 799999999988753221
Q ss_pred CCCcCCCCcccCCCccceEEEEEcCCCCeEEEee---CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
. .+...+.+++|+|+++++++++ ++.|++|++.++.
T Consensus 300 ----------~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~------------------------------ 338 (401)
T 4aez_A 300 ----------V-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG------------------------------ 338 (401)
T ss_dssp ----------E-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE------------------------------
T ss_pred ----------E-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc------------------------------
Confidence 1 2356799999999999998843 6799999987631
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
......+.+|... +.+++| +|+|++|++++.||.|++||+.+++.+....
T Consensus 339 ------~~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 339 ------LTKQVDIPAHDTR--VLYSAL-SPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ------EEEEEEEECCSSC--CCEEEE-CTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ------ceeEEEecCCCCC--EEEEEE-CCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 1223345677776 999999 9999999999999999999999988776543
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.8e-39 Score=299.36 Aligned_cols=322 Identities=14% Similarity=0.057 Sum_probs=231.4
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC----C---CE
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----G---DI 75 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~----g---~~ 75 (471)
+++|+| ++|++|+.||+|++|++++++... .......+.+|...|.+++|+|+ + ++
T Consensus 21 ~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 21 SVSACN--SFTVSCSGDGYLKVWDNKLLDNEN---------------PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEECS--SEEEEEETTSEEEEEESBCCTTCC---------------GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred EEEecC--CeEEEEcCCCEEEEEECCCccccc---------------CCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 456777 799999999999999999876221 12233678899999999999999 9 99
Q ss_pred EEEecCCCeEEEEECCCCce-----EEEeecCC-----CcceeEEEEe----cCCCCeE-EEEEeCCCeEEEEeccc---
Q 012064 76 LISGSDDRRVILWDWKTERV-----KLSFHSGH-----NDNVFQAKIM----PFTDDRS-IVTCAADGQVRHAQILE--- 137 (471)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~~~-l~s~~~dg~i~iwd~~~--- 137 (471)
|++++.|+.|++||+.+++. ...+ ..| ...|.+++|+ | ++++ |++++.||.|++||+..
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDR--LLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCC--CCceEEEEEeCCCcEEEEeCCcccc
Confidence 99999999999999998876 5666 677 5899999999 9 9999 99999999999999988
Q ss_pred ---cCcce---eeEe-------eceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCccee--
Q 012064 138 ---RGGVE---TKLL-------GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT-- 202 (471)
Q Consensus 138 ---~~~~~---~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-- 202 (471)
.+... ...+ ..|...|.+++|+|++ ++++++.|+.|++||+++++....+.... .+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~h~~ 231 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQH-------SMIN 231 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC----------C
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccc-------cccc
Confidence 55554 0024 4478899999999998 78999999999999999988777665310 02
Q ss_pred -eeeeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE
Q 012064 203 -VVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (471)
Q Consensus 203 -~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (471)
...+.+++|+|+ +.+|++++.| |.|++||+++.+............ ........|...|.+++|+|++++|++
T Consensus 232 ~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 232 NSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS--QASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp CCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred cCCccceEEECCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCcccc--cccccccccCCcEEEEEECCCCCEEEE
Confidence 457999999998 7899999999 999999998875332211000000 000000116788999999999999999
Q ss_pred ee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC--
Q 012064 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-- 355 (471)
Q Consensus 279 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g-- 355 (471)
++ ++.|++||+.++.....+........ + ..+ ...........|... |.+++| +|++
T Consensus 309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~-------~~~-~~~g~~~~~~~~~~~--v~~~~~-~~~g~~ 368 (397)
T 1sq9_A 309 AGWDGKLRFWDVKTKERITTLNMHCDDIE---------I-------EED-ILAVDEHGDSLAEPG--VFDVKF-LKKGWR 368 (397)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCGGGCS---------S-------GGG-CCCBCTTSCBCSSCC--EEEEEE-ECTTTS
T ss_pred EeCCCeEEEEEcCCCceeEEEecccCccc---------c-------hhh-hhccccccccccCCc--eeEEEe-cccccc
Confidence 88 66899999987532211110000000 0 000 000000011122554 999999 9998
Q ss_pred --------cEEEEeeCCCeEEEEEccCCe
Q 012064 356 --------EYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 356 --------~~l~~g~~dg~v~iwd~~~~~ 376 (471)
++|++|+.||.|++||+.+|+
T Consensus 369 ~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 369 SGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp BSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-38 Score=296.21 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=231.7
Q ss_pred ecccccc--EEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 57 LDKHRGC--VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 57 l~~h~~~--V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
..+|... +.+++|++ ..+++++.|+.|++||+.+++....+...|...|.+++|+| ++++|++++.||.|++||
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEE
Confidence 3466655 44566664 55788889999999999999988777666899999999999 999999999999999999
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
+.+++.... +..|...|.+++|++ ..+++++.||.|++||++.. .....+.. +...|.+++|+|
T Consensus 163 ~~~~~~~~~--~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~ 227 (401)
T 4aez_A 163 VESQTKLRT--MAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQG----------HSSEVCGLAWRS 227 (401)
T ss_dssp TTTCCEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECT
T ss_pred CcCCeEEEE--ecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcC----------CCCCeeEEEEcC
Confidence 988776654 778999999999953 47899999999999999854 44444432 556899999999
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee---CCcEEEEec
Q 012064 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN---DEFIYLFTQ 289 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~---~~~i~i~d~ 289 (471)
+ +.+|++++.||.|++||+++.+. ......|...|.+++|+|++. ++++++ ++.+++||+
T Consensus 228 ~-~~~l~s~~~d~~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 228 D-GLQLASGGNDNVVQIWDARSSIP---------------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp T-SSEEEEEETTSCEEEEETTCSSE---------------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred C-CCEEEEEeCCCeEEEccCCCCCc---------------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 8 78999999999999999987642 223445678899999999775 566654 678999999
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE--eeCCCeE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRI 367 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~--g~~dg~v 367 (471)
.++ .....+..+ .. +.+++| +|+++++++ |+.||.|
T Consensus 292 ~~~--------------------------------------~~~~~~~~~-~~--v~~~~~-s~~~~~l~~~~g~~dg~i 329 (401)
T 4aez_A 292 ATG--------------------------------------ARVNTVDAG-SQ--VTSLIW-SPHSKEIMSTHGFPDNNL 329 (401)
T ss_dssp TTC--------------------------------------CEEEEEECS-SC--EEEEEE-CSSSSEEEEEECTTTCEE
T ss_pred CCC--------------------------------------CEEEEEeCC-Cc--EEEEEE-CCCCCeEEEEeecCCCcE
Confidence 874 223344332 33 899999 999999998 5589999
Q ss_pred EEEEccCCeeeE--EecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcc
Q 012064 368 FIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (471)
Q Consensus 368 ~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (471)
++||+.+++... .+.+|...|.+++|+|++++|++++.||.|++|++.+++...
T Consensus 330 ~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 999999865544 467899999999999999999999999999999999877643
No 79
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=293.11 Aligned_cols=298 Identities=13% Similarity=0.134 Sum_probs=237.2
Q ss_pred eeeeeEEeccccccEEEEEEcCC---CCEEEEecCCCeEEEEECCC-CceEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 50 RLGIYAKLDKHRGCVNTVSFNTD---GDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 50 ~~~~~~~l~~h~~~V~~~~~s~~---g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
+.+..+.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+.....+|...|.+++|+| ++++|++++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~ 105 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD--DGSKVFTAS 105 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT--TSSEEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc--CCCEEEEEc
Confidence 34455788999999999999999 69999999999999999997 6665455578999999999999 999999999
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEE--ccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (471)
.||.|++||+.+++... +..|...|.+++| +|++ .++++++.||.|++||+++++....+...
T Consensus 106 ~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------- 170 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLP----------- 170 (368)
T ss_dssp TTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECS-----------
T ss_pred CCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecC-----------
Confidence 99999999998776543 5679999999999 8888 67899999999999999999888777632
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe----EEEe
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL----LVSY 279 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~ 279 (471)
..+.++.+.++ .+++++.++.+++|+++...... ..........+.++++.++... ++++
T Consensus 171 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 171 ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEF-------------RRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEE-------------EECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCceEEEecCC---eeEEEeCCCcEEEEEeccccchh-------------hhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 24666666653 67888899999999998754211 0111122334555555554443 6666
Q ss_pred e-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce----------eEeeee
Q 012064 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC----------VTVKGV 348 (471)
Q Consensus 280 ~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~ 348 (471)
+ ++.+++|+++.... ......+.+|... ..+.++
T Consensus 235 ~~dg~i~i~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNP-----------------------------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp ETTSEEEEEESSCSCH-----------------------------------HHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred cCCCcEEEEecCCCCc-----------------------------------cccceeeeeeecccccccccccccceEEE
Confidence 6 77899999976421 1234455555431 038999
Q ss_pred eeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 349 ~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
+| +|++++|++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.|+..+.|++..
T Consensus 280 ~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 280 AF-HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EE-ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99 99999999999999999999999999999999999999999999999999999998766666543
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=294.03 Aligned_cols=306 Identities=12% Similarity=0.092 Sum_probs=231.3
Q ss_pred CCCCCCCCCcE-EEEecC---CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC---CC
Q 012064 2 DDASNNNNNKR-ARTSVD---KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---GD 74 (471)
Q Consensus 2 ~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~---g~ 74 (471)
.+++|+|++.. +++|+. ||.|++||+++++... ....+|.+.|.+++|+|+ ++
T Consensus 22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--------------------~~~~~~~~~v~~~~~~~~~~~~~ 81 (357)
T 3i2n_A 22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--------------------LREIEKAKPIKCGTFGATSLQQR 81 (357)
T ss_dssp EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE--------------------EEEEEESSCEEEEECTTCCTTTC
T ss_pred EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc--------------------eeeecccCcEEEEEEcCCCCCCc
Confidence 35678998854 556665 9999999999877552 223378999999999998 69
Q ss_pred EEEEecCCCeEEEEECCCCc-eEEEeecCCCcceeEEEE------ecCCCCeEEEEEeCCCeEEEEeccccC-cceeeEe
Q 012064 75 ILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKI------MPFTDDRSIVTCAADGQVRHAQILERG-GVETKLL 146 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~------~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~ 146 (471)
+|++|+.||.|++||+.+++ .+..+ .+|...|.++.| +| ++++|++++.||.|++||+.+++ .... +
T Consensus 82 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~ 156 (357)
T 3i2n_A 82 YLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGE--GAPEIVTGSRDGTVKVWDPRQKDDPVAN--M 156 (357)
T ss_dssp CEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC---CCCEEEEEETTSCEEEECTTSCSSCSEE--E
T ss_pred eEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCC--CccEEEEEeCCCeEEEEeCCCCCCccee--c
Confidence 99999999999999999888 65665 789999999954 67 89999999999999999998876 3332 4
Q ss_pred ecee----eeEEEEE----EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC---CC
Q 012064 147 GKHQ----GRAHKLA----IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP---RN 215 (471)
Q Consensus 147 ~~~~----~~v~~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~ 215 (471)
..|. ..+.+++ |+|++ .++++++.||.|++||+++++...... +...+.+++|+| +
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~- 223 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWETN-----------IKNGVCSLEFDRKDIS- 223 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEESCSSSS-
T ss_pred cccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeeecC-----------CCCceEEEEcCCCCCC-
Confidence 4333 3788888 67888 588999999999999999987644432 455799999999 6
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee-CCcEEEEecCCCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~d~~~~~ 293 (471)
+.++++++.||.|++||+++.+...... ......|...|.+++|+|+++ +|++++ ++.|++||+..+.
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFA----------SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEE----------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCEEEEECCCCeEEEEeCcCCCccccee----------eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 6899999999999999998865322110 001236788999999999998 788877 6689999998765
Q ss_pred CCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE-EeeCCCeEEEEEc
Q 012064 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKK 372 (471)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~-~g~~dg~v~iwd~ 372 (471)
........... .. .......+..+.+|... |.+++| +|++++|+ +++.||.|++||+
T Consensus 294 ~~~~~~~~g~~--------------~~-----~~~~~~~~~~~~~~~~~--v~~~~~-s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 294 QRSKKDSEGIE--------------MG-----VAGSVSLLQNVTLSTQP--ISSLDW-SPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp CC--CCTTSCC--------------CC-----CCCEEEEEEEEECCSSC--EEEEEE-CSSSTTEEEEEETTSEEEEEEE
T ss_pred ccccccCCCCc--------------cc-----cccccceeeccccCCCC--eeEEEE-cCCCCeEEEEecCCCcEEEEEC
Confidence 43221110000 00 00112456677888776 999999 99999998 8999999999999
Q ss_pred cCCee
Q 012064 373 KGGEL 377 (471)
Q Consensus 373 ~~~~~ 377 (471)
.+.+.
T Consensus 352 ~~~~~ 356 (357)
T 3i2n_A 352 TKLNK 356 (357)
T ss_dssp CC---
T ss_pred CCccc
Confidence 77654
No 81
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.3e-39 Score=295.14 Aligned_cols=294 Identities=12% Similarity=0.136 Sum_probs=223.2
Q ss_pred CCCCCCCC-cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEec
Q 012064 3 DASNNNNN-KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS 80 (471)
Q Consensus 3 ~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~ 80 (471)
+++|+|++ ++|++|+.||.|++||+.+++... ...+.+|.+.|.+++|+| ++++|++++
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-------------------FIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp EEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-------------------EECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred EEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-------------------eeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 56789998 999999999999999999777652 112347999999999999 789999999
Q ss_pred CCCeEEEEECCCCceEEEee--cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEE
Q 012064 81 DDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 158 (471)
.|+.|++||+.. +.+..+. ..|...|.+++|+| ++++|++++.|+.|++||+. ++.. ..+..|...|.+++|
T Consensus 139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~--~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD-GHEI--FKEKLHKAKVTHAEF 212 (383)
T ss_dssp TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT-SCEE--EEEECSSSCEEEEEE
T ss_pred CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC-CCEE--EEeccCCCcEEEEEE
Confidence 999999999985 4444442 23457899999999 99999999999999999983 4433 347889999999999
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCc----cceeeeecccCCcCcceeeeeeEEEEEcC-CCCceEEEEeCCCeEEEEEc
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGA----ATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSDEYTRLYDI 233 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~ 233 (471)
+|+++.++++++.|+.|++||+++.+ ....+. +...+.+++|+| + +.+|++++.|+.|++||+
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~-~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-----------HEKPVNAAYFNPTD-STKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-----------CSSCEEEEEECTTT-SCEEEEEESSSEEEEEET
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-----------CCCceEEEEEcCCC-CCEEEEEcCCCcEEEEEC
Confidence 99996589999999999999999843 333332 556899999999 7 789999999999999999
Q ss_pred CCCccCCCCCCCCCC--CcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccc
Q 012064 234 RKYKWDGSTDFGQPA--DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (471)
++.+........... .........-.....+..++|+|++++ ..+.++.|++||+.++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~------------------- 340 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSG------------------- 340 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTC-------------------
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCC-------------------
Confidence 987654322210000 000001111112345667888888888 3333779999999874
Q ss_pred cCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
..+..+.++.....+..++| +|++++|++|+ ||.|++||+++
T Consensus 341 -------------------~~~~~l~~~~~~~~~~~~~~-s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 -------------------GLVHQLRDPNAAGIISLNKF-SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -------------------CEEEEECBTTBCSCCCEEEE-CTTSSEEEEEE-TTEEEEEECC-
T ss_pred -------------------ceeeeecCCCCCceEEEEEE-ecCccEEEEec-CCcEEEEecCC
Confidence 33455665432223666788 99999999997 99999999864
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.6e-39 Score=288.36 Aligned_cols=275 Identities=17% Similarity=0.206 Sum_probs=203.5
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 132 (471)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++. +..+ .+|.+.|.+++|+|..++++|++++.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 45679999999999999999999999999999999987753 3344 79999999999986223889999999999999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEEccCC-CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
||++++.......+.+|...|.+++|+|++ ..++++++.|+.|++||++.+......... .+ |...+.+++|
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-----~~--h~~~v~~~~~ 158 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-----NA--HTIGCNAVSW 158 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-----TS--SSSCBCCCEE
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-----cc--ccCCcceEEE
Confidence 999877544444577899999999999982 257899999999999999876422111111 11 4557889999
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecC
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~ 290 (471)
+|+.. .+.+ .+...+ ...+++++|++++ |+.|++||++
T Consensus 159 ~~~~~--------~~~~--~~~~~~-------------------------------~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 159 APAVV--------PGSL--IDHPSG-------------------------------QKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp CCCCC--------C--------CCS-------------------------------CCCCCCCBEECCBTTSBCCEEEEC
T ss_pred ccccC--------Cccc--cccccc-------------------------------cCccccceEEEecCCCeEEEEEeC
Confidence 99731 0100 000000 0112456788877 6689999985
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCC----cEEEEeeCCCe
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGR 366 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g----~~l~~g~~dg~ 366 (471)
.... ......+.+|... |.+++| +|++ ++|++|+.||+
T Consensus 198 ~~~~-----------------------------------~~~~~~l~~h~~~--V~~v~~-sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 198 EDGQ-----------------------------------WKEEQKLEAHSDW--VRDVAW-APSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp TTSC-----------------------------------EEEEECCBCCSSC--EEEEEC-CCCSSCSCCEEEEEETTCE
T ss_pred CCCc-----------------------------------cceeeecccCCCc--eEEEEe-cCCCCCCCceEEEEcCCCe
Confidence 4210 1234556788876 999999 9986 89999999999
Q ss_pred EEEEEccCC---e-eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 367 IFIWKKKGG---E-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 367 v~iwd~~~~---~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
|++||+.+. + ....+..|.+.|.+++|+|++++|++++.|++|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998762 1 2244567889999999999999999999999999999863
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-37 Score=295.35 Aligned_cols=308 Identities=16% Similarity=0.216 Sum_probs=246.2
Q ss_pred eeEEeccccccE-EEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 53 IYAKLDKHRGCV-NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 53 ~~~~l~~h~~~V-~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+ .+|.+.|.+++|+| ++ .+++++.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~--~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH--GG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS--TT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcC--CC-EEEEEeCCCCEE
Confidence 446888998875 66665 5789999999999999999999988887 79999999999998 77 999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEcc--CCCcEEEEEecCCeEEEEeccCCccceeeeeccc---------------
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI--------------- 194 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------- 194 (471)
+||+.+++.... +.+|...|.+++|++ ++ ..+++++.|+.|++||++++...........
T Consensus 187 vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 187 VWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEECCCCcEEEE--ECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 999988776544 788999999999985 55 6899999999999999998765432111000
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (471)
....+ +...+.++ +++ +.++++++.||.|++||+++.+.. .....|...|.+++|+|+++
T Consensus 264 ~~~~~--~~~~v~~~--~~~-~~~l~~~~~d~~i~vwd~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 264 GVLRG--HMASVRTV--SGH-GNIVVSGSYDNTLIVWDVAQMKCL---------------YILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp EEECC--CSSCEEEE--EEE-TTEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEEETTTT
T ss_pred EEccC--ccceEEEE--cCC-CCEEEEEeCCCeEEEEECCCCcEE---------------EEecCCCCCEEEEEEcCCCC
Confidence 00011 34455655 455 679999999999999999876532 23455788899999999999
Q ss_pred eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC
Q 012064 275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (471)
Q Consensus 275 ~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (471)
++++++ ++.|++||+.++ .....+.+|... +.++.| +
T Consensus 324 ~l~sg~~dg~i~vwd~~~~--------------------------------------~~~~~~~~h~~~--v~~~~~-~- 361 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENG--------------------------------------ELMYTLQGHTAL--VGLLRL-S- 361 (464)
T ss_dssp EEEEEETTSCEEEEETTTT--------------------------------------EEEEEECCCSSC--EEEEEE-C-
T ss_pred EEEEEeCCCcEEEEECCCC--------------------------------------cEEEEEeCCCCc--EEEEEE-c-
Confidence 999988 668999999873 456677788876 888888 6
Q ss_pred CCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcc--cCcchheeeh
Q 012064 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT--LPTNIEQAMM 431 (471)
Q Consensus 354 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~ 431 (471)
+++|++|+.||.|++||+.+++...... |...+..++|+|+++++++++ ||.|++||+.+++... ...+...+..
T Consensus 362 -~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~ 438 (464)
T 3v7d_B 362 -DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWS 438 (464)
T ss_dssp -SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEE
T ss_pred -CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEE
Confidence 5799999999999999999887665553 666788899999999999998 8999999999988753 4566666666
Q ss_pred hhH
Q 012064 432 MTM 434 (471)
Q Consensus 432 ~~~ 434 (471)
+.+
T Consensus 439 v~~ 441 (464)
T 3v7d_B 439 VNF 441 (464)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 84
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.2e-38 Score=296.49 Aligned_cols=288 Identities=16% Similarity=0.187 Sum_probs=228.5
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCe
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~ 84 (471)
.+++++++|++|+.||.|++||+++++.. ..+.+|.+.|.+++|+|++++|++|+.|+.
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 162 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQR---------------------EIDQAHVSEITKLKFFPSGEALISSSQDMQ 162 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEE---------------------EETTSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCccee---------------------eecccccCccEEEEECCCCCEEEEEeCCCe
Confidence 57899999999999999999999977665 567899999999999999999999999999
Q ss_pred EEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec---eeeeEE-------
Q 012064 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK---HQGRAH------- 154 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~------- 154 (471)
|++||+.+++.+..+ .+|...|.+++|+| ++++|++++.||.|++||+.+++.... +.. +...+.
T Consensus 163 i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~ 237 (420)
T 3vl1_A 163 LKIWSVKDGSNPRTL-IGHRATVTDIAIID--RGRNVLSASLDGTIRLWECGTGTTIHT--FNRKENPHDGVNSIALFVG 237 (420)
T ss_dssp EEEEETTTCCCCEEE-ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEETTTTEEEEE--ECBTTBTTCCEEEEEEEEC
T ss_pred EEEEeCCCCcCceEE-cCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEeECCCCceeEE--eecCCCCCCCccEEEEecC
Confidence 999999999988777 78999999999999 999999999999999999988766543 332 333444
Q ss_pred --------------EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE
Q 012064 155 --------------KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (471)
Q Consensus 155 --------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (471)
+++|+|++ .++++++.||.|++||+++++....+... +...+.+++|+|++..+|+
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSK---------FTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCT---------TSSCEEEEEECSSCTTEEE
T ss_pred CcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccc---------cCCCceeEEEeCCCCCEEE
Confidence 44557777 68899999999999999998766555321 4457999999999544999
Q ss_pred EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCC
Q 012064 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~ 299 (471)
+++.||.|++||+++.+.. ......++...+.++.+ +++++|++++ ++.|++|++..........
T Consensus 308 ~g~~dg~i~vwd~~~~~~~-------------~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECP-------------VGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp EEETTSEEEEEETTCTTSC-------------SEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred EEeCCCeEEEEEcCCCcCc-------------hhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 9999999999999886420 12233346677888865 5677888887 6689999998743222110
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc---EEEEeeCCCeEEEEEccC
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE---YVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~---~l~~g~~dg~v~iwd~~~ 374 (471)
.......+.++... +.+++| +|+++ .+++.+.+|.+.+|++++
T Consensus 374 -----------------------------~~~~~~~~~~~~~~--v~~~~~-s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 374 -----------------------------EFETPTFLVSNDDA--VSQFCY-VSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -----------------------------CTTSCEEECCSSCC--CCEEEE-ECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred -----------------------------eccCccEEccCCcc--eEEEEE-ccCCCCcceEEEEcCCceEEEEeccC
Confidence 01223345556655 889998 99999 777777899999999864
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6e-38 Score=278.62 Aligned_cols=250 Identities=19% Similarity=0.245 Sum_probs=198.6
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC--CCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~--g~~l~s~ 79 (471)
.+++|+|++++||+|+.|++|+|||++++.. +....+.+|.++|.+++|+|+ +++|++|
T Consensus 13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~ 73 (297)
T 2pm7_B 13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASC 73 (297)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEEccccCCeEEEEecCCCcCCEEEEE
Confidence 3578999999999999999999999974321 122688999999999999864 8999999
Q ss_pred cCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCC--CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 80 SDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
+.|++|++||+.+++ .+..+ .+|...|.+++|+| + +.+|++++.|+.|++||+.+........+.+|...|.+
T Consensus 74 s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p--~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 74 SYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (297)
T ss_dssp ETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred cCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCc--CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence 999999999998874 33444 68999999999999 6 88999999999999999987654333457889999999
Q ss_pred EEEccCC------------CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC--CceEEE
Q 012064 156 LAIEPGS------------PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAV 221 (471)
Q Consensus 156 ~~~~~~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~ 221 (471)
++|+|++ ..+|++++.|+.|++||+++++....... . ..+ |...|.+++|+|++ +.+|++
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~-~---l~~--H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-T---LEG--HSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE-E---ECC--CSSCEEEEEECCCCSSSEEEEE
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE-E---ecC--CCCceEEEEECCCCCCceEEEE
Confidence 9999973 25799999999999999988763221110 0 011 55689999999984 479999
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc--CCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
++.|+.|++||++....... .... ..+...|.+++|+|++++|++++ |+.|++|+...
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~------------~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWK------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EETTSCEEEEEESSTTSCCE------------EEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EECCCcEEEEEeCCCCCccc------------eeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999999976431000 0111 34567899999999999999888 66899999763
No 86
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.7e-37 Score=280.63 Aligned_cols=309 Identities=12% Similarity=0.124 Sum_probs=224.3
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc----eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++. ....+ .+|...|.+++|+|..++++|++++.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 5678999999999999999999999999999999998764 33344 789999999999983238999999999999
Q ss_pred EEEeccccCc-------ceeeEeeceeeeEEEEEEccC--CCcEEEEEecCCeEEEEeccCCccceeeeeccc---CCcC
Q 012064 131 RHAQILERGG-------VETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI---DDRR 198 (471)
Q Consensus 131 ~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~ 198 (471)
++||+..++. .....+..|...|.+++|+|+ + .++++++.||.|++||+++++....+..... ....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999987643 223447789999999999998 7 5789999999999999999887655442111 1111
Q ss_pred cceeeeeeEEEEEcCC--CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC---
Q 012064 199 NYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--- 273 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 273 (471)
...+...+.+++|+|+ ++.++++++.++.+.+|+....+.. .......|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-------------VAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-------------EEEECCCCCSCEEEEEECCCSSCS
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-------------eeeecCCCCcceeEEEECCCCCCc
Confidence 1125567899999996 4689999999999988887665421 122344678899999999998
Q ss_pred -CeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 274 -ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 274 -~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
++|++++ ++.|++||+..+...... ..+.. .......
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------------------~~~~~--~~~~~~~- 268 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLAS--------------------------------------EESLT--NSNMFDN- 268 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC----------------------------------------------------------
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCcccc--------------------------------------CCccc--ceeccCC-
Confidence 7888888 668999999865322110 00000 0111222
Q ss_pred CCCCcEEEE----eeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 352 GPKCEYVVS----GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 352 s~~g~~l~~----g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
++....++. +.....+.+|+....+.+..+.+|.+.|++++|+|++++|++++.||.|++|++..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 333333333 33445677788778888999999999999999999999999999999999999998655
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.6e-38 Score=288.07 Aligned_cols=311 Identities=12% Similarity=0.094 Sum_probs=230.8
Q ss_pred CCCCCC----CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC----CC
Q 012064 3 DASNNN----NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GD 74 (471)
Q Consensus 3 ~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~----g~ 74 (471)
+++|+| ....+++++.++.|++||..+++.+. .+. ......|...|.+++|+|+ ++
T Consensus 23 ~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~---------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 23 GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR---------------LLQ-SYVDADADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp EEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE---------------EEE-EEECSCTTCCEEEEEEEECTTTCCE
T ss_pred EEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE---------------eee-eccccCCCCcEEEEEeccCCCCCCC
Confidence 456776 35567777778899999999877652 111 0111236788999999999 67
Q ss_pred EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEe---eceee
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQG 151 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~ 151 (471)
+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|. ++++|++++.||.|++||+.+++.... + ..|..
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~ 162 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAI--FGGVEGHRD 162 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEE--ECSTTSCSS
T ss_pred EEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEE--ecccccccC
Confidence 9999999999999999999988777 689999999999983 578999999999999999987765543 4 57999
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecc------------------cCCcCcceeeeeeEEEEEcC
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP------------------IDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~p 213 (471)
.|.+++|+|++ ..+++++.||.|++||+++++....+.... ........+...|.+++|+
T Consensus 163 ~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 163 EVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred ceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 99999999998 578999999999999999876554332100 0000000155678999998
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC--CCeEEEee-CCcEEEEecC
Q 012064 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~-~~~i~i~d~~ 290 (471)
+.++++++.||.|++||+++.+...... ...............|...|.+++|+|+ +++|++++ ++.|++||+.
T Consensus 241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 241 --GDLILSKSCENAIVCWKPGKMEDDIDKI-KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp --TTEEEEECSSSEEEEEEESSTTCCGGGC-CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred --CCEEEEEecCCEEEEEeCCCcccccccc-ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 3589999999999999998765311100 0000001112334456778999999999 99999888 6689999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
.+... ......+.+|.....|.+++| +|++++|++++.||.|++|
T Consensus 318 ~~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 318 VEDPH----------------------------------KAKCTTLTHHKCGAAIRQTSF-SRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp SSSGG----------------------------------GCEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred CCCCc----------------------------------cccceEEcccccCCceEEEEe-CCCCCeEEEEeCCCEEEEE
Confidence 75321 112345666632334999999 9999999999999999999
Q ss_pred Ecc
Q 012064 371 KKK 373 (471)
Q Consensus 371 d~~ 373 (471)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 985
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=286.03 Aligned_cols=281 Identities=21% Similarity=0.312 Sum_probs=229.7
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
..+|...|.++++ ++++|++|+.||.|++||+.+++....+ .+|.+.|.+++| ++++|++|+.||.|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY----DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC----CSSEEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE----CCCEEEEEcCCCeEEEEECC
Confidence 3467788999887 7999999999999999999999988777 799999999988 67899999999999999998
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
+++.... +..|...|.+++|++ ..+++++.||.|++||++++........... +...|.+++| + +
T Consensus 202 ~~~~~~~--~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~v~~~~~--~-~ 266 (435)
T 1p22_A 202 TGEMLNT--LIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVG-------HRAAVNVVDF--D-D 266 (435)
T ss_dssp SCCEEEE--ECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECC-------CSSCEEEEEE--E-T
T ss_pred CCcEEEE--EcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecC-------CCCcEEEEEe--C-C
Confidence 8876654 788999999999974 3689999999999999998876533222111 5567899999 3 5
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~ 295 (471)
.++++|+.||.|++||+++.+.. .....|...|.++.++ ++++++++ ++.|++||++++
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~---------------~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~--- 326 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFV---------------RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG--- 326 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---
T ss_pred CEEEEEeCCCeEEEEECCcCcEE---------------EEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---
Confidence 79999999999999999887532 2344567889999984 56888877 679999999874
Q ss_pred CCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
.....+.+|... +.++.| ++++|++|+.||.|++||+.++
T Consensus 327 -----------------------------------~~~~~~~~h~~~--v~~~~~---~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 327 -----------------------------------ACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -----------------------------------CEEEEECCCSSC--EEEEEC---CSSEEEEEETTSCEEEEEHHHH
T ss_pred -----------------------------------CEEEEEeCCcCc--EEEEEe---cCCEEEEEeCCCcEEEEECCCC
Confidence 345667778776 888877 6889999999999999999877
Q ss_pred e---------eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcc
Q 012064 376 E---------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (471)
Q Consensus 376 ~---------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (471)
+ .+..+.+|.+.|.+++| ++++|++++.||.|++||+.+.....
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred CCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 6 78889999999999999 78899999999999999998865543
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-37 Score=274.57 Aligned_cols=277 Identities=13% Similarity=0.185 Sum_probs=222.5
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
+++| +++++|++|+.||.|++||+++++.. ..+..|.+.|.+++|+|++++|++++.|
T Consensus 23 ~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 23 DVVA-VDDSKVASVSRDGTVRLWSKDDQWLG---------------------TVVYTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp EEEE-EETTEEEEEETTSEEEEEEESSSEEE---------------------EEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEe-cCCCEEEEEEcCCcEEEEECCCCEEE---------------------EEeecCCccEEEEEECCCCCEEEEecCC
Confidence 4567 88999999999999999999877655 5778899999999999999999999999
Q ss_pred CeEEEEECCCC---ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEc
Q 012064 83 RRVILWDWKTE---RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 83 ~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+.|++|++... +....+ .+|...|.+++|. ++++++++.||.|++|| ..+.. ..+..|...+.+++|.
T Consensus 81 g~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~--~~~~~~~~~v~~~~~~ 151 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTL-IGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLV--YNLQAHNASVWDAKVV 151 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEE--EEEECCSSCEEEEEEE
T ss_pred CeEEEEEeeecCCCCcccch-hhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEE--EecccCCCceeEEEEc
Confidence 99999998764 344555 7899999999994 56999999999999999 33333 3477899999999999
Q ss_pred c-CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcc
Q 012064 160 P-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (471)
Q Consensus 160 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (471)
| ++ ..+++++.|+.|++||. .+....+... +...+.+++|+|+ +. +++++.||.|++||+++++.
T Consensus 152 ~~~~-~~l~~~~~d~~i~i~d~--~~~~~~~~~~---------~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 152 SFSE-NKFLTASADKTIKLWQN--DKVIKTFSGI---------HNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp ETTT-TEEEEEETTSCEEEEET--TEEEEEECSS---------CSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCE
T ss_pred cCCC-CEEEEEECCCCEEEEec--CceEEEEecc---------CcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhh
Confidence 8 55 68999999999999993 3333333221 4457999999998 45 89999999999999987653
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
. .....|...|.+++|+|++++++.+.++.|++||+.++
T Consensus 218 ~---------------~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------------------- 256 (313)
T 3odt_A 218 L---------------RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------------------------- 256 (313)
T ss_dssp E---------------EEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC--------------------------
T ss_pred h---------------hhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC--------------------------
Confidence 2 23445778999999999996444445789999999874
Q ss_pred ccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe
Q 012064 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~ 381 (471)
.....+..|... +.+++| +|+++ +++++.||.|++||+.+++.....
T Consensus 257 ------------~~~~~~~~~~~~--i~~~~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 257 ------------SLKQVITLPAIS--IWSVDC-MSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp ------------CEEEEEECSSSC--EEEEEE-CTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred ------------ceeEEEeccCce--EEEEEE-ccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 345666777665 899999 99998 557889999999999887665443
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.1e-36 Score=284.96 Aligned_cols=283 Identities=17% Similarity=0.292 Sum_probs=236.6
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
+..+.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+..+ .+|.+.|.+++|++ +++++++.||.|+
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRTLK 182 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCeEE
Confidence 345678999987533 24557899999999999999999999988777 79999999999964 6999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+||+.+++.... +.+|...|.+++|++ ..+++++.||.|++||+++++....+.. +...+.+++|
T Consensus 183 vwd~~~~~~~~~--~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~----------~~~~v~~~~~ 247 (445)
T 2ovr_B 183 VWNAETGECIHT--LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMG----------HVAAVRCVQY 247 (445)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEEC----------CSSCEEEEEE
T ss_pred EEECCcCcEEEE--ECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcC----------CcccEEEEEE
Confidence 999988766554 788999999999964 4689999999999999999988776653 5557899998
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecC
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~ 290 (471)
+ +.++++++.||.|++||+++.+.. .....|...|.++.| ++.++++++ ++.|++||+.
T Consensus 248 --~-~~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 248 --D-GRRVVSGAYDFMVKVWDPETETCL---------------HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp --C-SSCEEEEETTSCEEEEEGGGTEEE---------------EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred --C-CCEEEEEcCCCEEEEEECCCCcEe---------------EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence 3 578999999999999999876532 233456788999999 778888887 7799999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
++ .....+.+|... +.++.+ +++++++|+.||.|++|
T Consensus 308 ~~--------------------------------------~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 308 TG--------------------------------------NCIHTLTGHQSL--TSGMEL---KDNILVSGNADSTVKIW 344 (445)
T ss_dssp TC--------------------------------------CEEEEECCCCSC--EEEEEE---ETTEEEEEETTSCEEEE
T ss_pred CC--------------------------------------CEEEEEcCCccc--EEEEEE---eCCEEEEEeCCCeEEEE
Confidence 74 344566677665 666655 56799999999999999
Q ss_pred EccCCeeeEEecC---CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 371 KKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 371 d~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
|+.+++.+..+.+ |...|.+++|+ +++|++++.||.|++||+.+++..
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 9999999999886 88899999995 689999999999999999988764
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-37 Score=281.90 Aligned_cols=261 Identities=16% Similarity=0.260 Sum_probs=208.5
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECC--CCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 54 ~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
...+.+|.+.|++++|+|++++||+|+.||.|++||+. +++.+..+ .+|...|.+++|+|..++++|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 36788999999999999999999999999999999998 44555555 7899999999999811289999999999999
Q ss_pred EEeccccCcceeeEeeceeeeEEEEEEccC--CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 132 HAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
+||+.+++......+..|...|.+++|+|+ + .++++++.|+.|++||++++.......... +...+.++
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~v~~~ 153 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVNSA 153 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEEC--------CTTCEEEE
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecC--------CCCceEEE
Confidence 999988774444557789999999999999 6 689999999999999999885544333211 55579999
Q ss_pred EEcCC------------CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE
Q 012064 210 AIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (471)
Q Consensus 210 ~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (471)
+|+|. ++.++++++.||.|++||++..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------------------- 195 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------------- 195 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--------------------------------------
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--------------------------------------
Confidence 99994 2566777777777777776543200
Q ss_pred EeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC---
Q 012064 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--- 354 (471)
Q Consensus 278 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--- 354 (471)
......+.+|... +.+++| +|+
T Consensus 196 ----------------------------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~ 220 (379)
T 3jrp_A 196 ----------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLL 220 (379)
T ss_dssp ----------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSS
T ss_pred ----------------------------------------------------eeeEEEEecccCc--EeEEEE-CCCCCC
Confidence 0112344456655 889998 999
Q ss_pred CcEEEEeeCCCeEEEEEccCCe---eeE--EecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 355 CEYVVSGSDCGRIFIWKKKGGE---LIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 355 g~~l~~g~~dg~v~iwd~~~~~---~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
+++|++++.||.|++||+.+++ ... ....|...|.+++|+|++++|++++.||.|++|++...
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8999999999999999998863 222 23348889999999999999999999999999999853
No 92
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.5e-38 Score=285.19 Aligned_cols=291 Identities=14% Similarity=0.102 Sum_probs=213.6
Q ss_pred CCCCCCCCcEEEEecCCC-------eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCE
Q 012064 3 DASNNNNNKRARTSVDKA-------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI 75 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~ 75 (471)
+++|+|++++||+|+.|. .|++|+++.+..... ..........|.+|...|.+++++ ++.
T Consensus 19 sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~v~s~~~~--~~~ 85 (365)
T 4h5i_A 19 GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-----------EQFHILSEFALEDNDDSPTAIDAS--KGI 85 (365)
T ss_dssp EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH-----------HHEEEEEEEECCTTSCCCCEEEEE--TTE
T ss_pred EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee-----------eeeeeeeEEEccCCCCceEEEEeC--CCE
Confidence 577999999999997654 599999986543310 001112224577899999888775 455
Q ss_pred EEEe-----------cCCCeEEEEECCCCceEEEee--------cCCCcceeEEEEecCCCCeEEEEE--eCCCeEEEEe
Q 012064 76 LISG-----------SDDRRVILWDWKTERVKLSFH--------SGHNDNVFQAKIMPFTDDRSIVTC--AADGQVRHAQ 134 (471)
Q Consensus 76 l~s~-----------~~d~~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd 134 (471)
+++| +.|+.+++|++.......... ..+...+.+++|+| ||++++++ +.|++|++||
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp--Dg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR--EGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--TSSCEEEEESCSSCEEEEEE
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--CCCEEEEEECCCCCEEEEeE
Confidence 6654 457889999987654322221 23445688999999 99998754 4689999999
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
+.+.+.+.. + .|...|.+++|+|++ +++++++. +.+++|+..+++........ .+...+.+++|+|+
T Consensus 164 ~~~~~~~~~--~-~~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~v~fspd 230 (365)
T 4h5i_A 164 PSDLTEKFE--I-ETRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKTDF--------DKNWSLSKINFIAD 230 (365)
T ss_dssp TTTTEEEEE--E-ECSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEECCC--------CTTEEEEEEEEEET
T ss_pred CCCCcEEEE--e-CCCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeeecC--------CCCCCEEEEEEcCC
Confidence 988776553 4 477889999999999 56777774 55777777776654332211 14557999999999
Q ss_pred CCceEEEEeCCC----eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEec
Q 012064 215 NANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (471)
Q Consensus 215 ~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~ 289 (471)
+.++++++.|+ .++.|++....... ........|...|++++|+|+|++||+++ |+.|++||+
T Consensus 231 -g~~l~~~s~d~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 231 -DTVLIAASLKKGKGIVLTKISIKSGNTSV-----------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp -TEEEEEEEESSSCCEEEEEEEEETTEEEE-----------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred -CCEEEEEecCCcceeEEeecccccceecc-----------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 68888888777 68889887653210 01123445678899999999999999998 568999999
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCee-eecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV-YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
.++ ..+.. +.+|... |++++| +|||++||+|+.|++|+
T Consensus 299 ~~~--------------------------------------~~~~~~~~gH~~~--V~~v~f-Spdg~~laS~S~D~tvr 337 (365)
T 4h5i_A 299 KDL--------------------------------------SMSKIFKQAHSFA--ITEVTI-SPDSTYVASVSAANTIH 337 (365)
T ss_dssp TTT--------------------------------------EEEEEETTSSSSC--EEEEEE-CTTSCEEEEEETTSEEE
T ss_pred CCC--------------------------------------cEEEEecCcccCC--EEEEEE-CCCCCEEEEEeCCCeEE
Confidence 874 33444 4688887 999999 99999999999999999
Q ss_pred EEEccC
Q 012064 369 IWKKKG 374 (471)
Q Consensus 369 iwd~~~ 374 (471)
|||+..
T Consensus 338 vw~ip~ 343 (365)
T 4h5i_A 338 IIKLPL 343 (365)
T ss_dssp EEECCT
T ss_pred EEEcCC
Confidence 999854
No 93
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=286.47 Aligned_cols=331 Identities=10% Similarity=0.160 Sum_probs=222.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecccc------------ccEEEEEE
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR------------GCVNTVSF 69 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~~~~ 69 (471)
.+++|+|++++||+|+.||.|+||++++++... ......++....+++|. +.|.+++|
T Consensus 32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~----------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQ----------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECC---------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC----------cccccceeEecccccccccccccccccccCceEEEEE
Confidence 356799999999999999999999999766321 00111334567888998 88999999
Q ss_pred cCCC--CEEEEecCCCeEEEEECCCCceE---------------------------------------EEeecCCCccee
Q 012064 70 NTDG--DILISGSDDRRVILWDWKTERVK---------------------------------------LSFHSGHNDNVF 108 (471)
Q Consensus 70 s~~g--~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~ 108 (471)
+|++ .+|++++.|++|++||+.+++.. ..+..+|...|.
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 9998 89999999999999998764432 133468999999
Q ss_pred EEEEecCCCCeEEEEEeCCCeEEEEeccccCcceee------EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 109 QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK------LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 109 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
+++|+| ++++|+++ .|+.|++||+......... .+.+|...|.+++|+|+++.++++++.||.|++||+++
T Consensus 182 ~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 182 SISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp EEEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EEEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 999999 99999998 7999999999844322211 25579999999999999856899999999999999999
Q ss_pred Ccc----ceeeeecccCCcC--cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCc
Q 012064 183 GAA----TELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPN 255 (471)
Q Consensus 183 ~~~----~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 255 (471)
++. ...+..+...... ...+...|.+++|+|+ +.+|++++. +.|++||++. .+....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~-------------- 322 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVET-------------- 322 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCC--------------
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccce--------------
Confidence 876 4444321100000 0001127999999998 789999988 9999999986 442221
Q ss_pred ccCCCcc---------------ceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCc
Q 012064 256 LIGDEQV---------------GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (471)
Q Consensus 256 ~~~~~~~---------------~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
...|.. .+..++|+|++++|++++ ++.|++||+.+++...... ....... ..... .+.+
T Consensus 323 -~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~ 397 (447)
T 3dw8_B 323 -YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEA-SRENNKP--RTVLK-PRKV 397 (447)
T ss_dssp -EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEEC-CSTTCCT--TCBCC-CCCE
T ss_pred -eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeee-ccccccc--ccccC-Cccc
Confidence 112221 134599999999999988 6689999998865321100 0000000 00000 0000
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
....... ........+ .+.. .+..++| +|++++||+++.++ +++|..
T Consensus 398 ~~~~~~~-~~~~~~~~~-~~~~--~i~~~~~-~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 398 CASGKRK-KDEISVDSL-DFNK--KILHTAW-HPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp ECSSCCC-TTCEEGGGC-CTTS--CCCEEEE-CSSSSEEEEECSSC-EEEEEC
T ss_pred cccCCcc-ccccccccc-ccCC--ceeEEEE-CCCCCEEEEEecce-eeeecc
Confidence 0000000 000000000 1122 3888999 99999999998776 777764
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=284.40 Aligned_cols=296 Identities=10% Similarity=0.011 Sum_probs=219.9
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++++|||+++|+++.|++|+ |.++++ .+++|...|.+++|+|+| .
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------~l~gh~~~v~~V~FsPdg-------~ 65 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------DINCNSKNLFHVKEFPLE-------F 65 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCS------------------------CCSSBGGGTEEEEEECCC-------C
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccc------------------------eecCCCccEEEEEECCCC-------C
Confidence 5688999999999999999999 655443 346899999999999999 4
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee-----eEEEE
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-----RAHKL 156 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~ 156 (471)
++.+.+|+. +....+...|...|.+++|+| +|++|++++.||.+++||... .. ..+. |.. .+.++
T Consensus 66 ~~~~~~~~~---~~~~~~~~~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l--~~l~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 66 ENKLDFELA---QQNGLLNSQPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--ML--TNLD-SKGNLSSRTYHCF 135 (588)
T ss_dssp CCTTTTSCC---CSSCSSTTSCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EE--EECC-CSSCSTTTCEEEE
T ss_pred cceEEEEeC---CCceEeecCCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--ee--eecc-CCCccccccEEEE
Confidence 555555553 322222226688999999999 999999999999999999544 22 2244 554 49999
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccCCcc-------ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEE
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (471)
+|+|+| ++|++|+.||+|++||++++.. ...+.... .+ |...|.+++|+|+ + +++++.|+.++
T Consensus 136 afSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~----~g--h~~~V~sVawSPd-g--Laass~D~tVr 205 (588)
T 2j04_A 136 EWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD----AG--SKDWVTHIVWYED-V--LVAALSNNSVF 205 (588)
T ss_dssp EECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC----TT--CCCCEEEEEEETT-E--EEEEETTCCEE
T ss_pred EEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc----cc--ccccEEEEEEcCC-c--EEEEeCCCeEE
Confidence 999999 5789999999999999998754 22222111 11 4468999999998 4 78889999999
Q ss_pred EEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccc
Q 012064 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (471)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 309 (471)
+||+...+... ....+..+|...|.+++|+ |+.|+++++++|++||+.++
T Consensus 206 lWd~~~~~~~~-----------~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~----------------- 255 (588)
T 2j04_A 206 SMTVSASSHQP-----------VSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNY----------------- 255 (588)
T ss_dssp EECCCSSSSCC-----------CEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTT-----------------
T ss_pred EEECCCCcccc-----------ceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCC-----------------
Confidence 99998765210 0011224567889999999 68999998899999998764
Q ss_pred cccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee-eCCCCcEEEEeeCCCeEEEEEccC--------------
Q 012064 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKG-------------- 374 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~g~~l~~g~~dg~v~iwd~~~-------------- 374 (471)
.......+|... +..+.| .+||+..++++++||+ ++|....
T Consensus 256 ---------------------~~~~~~~gh~~~--V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d 311 (588)
T 2j04_A 256 ---------------------SISSLKTGSLEN--FHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLE 311 (588)
T ss_dssp ---------------------EEEEEECSCCSC--CCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHH
T ss_pred ---------------------eEEEEEcCCCce--EEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcC
Confidence 111222267765 777764 2789999999999999 9998631
Q ss_pred ---------CeeeEEecCCCcceEEEEEcCCCCEEEEeec
Q 012064 375 ---------GELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (471)
Q Consensus 375 ---------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (471)
++....+. +...|.+++|||||+.+|+++.
T Consensus 312 ~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 312 KKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred CEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 11111222 2446999999999999998874
No 95
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=292.66 Aligned_cols=290 Identities=9% Similarity=0.040 Sum_probs=209.6
Q ss_pred CCCCCCC------CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEE
Q 012064 3 DASNNNN------NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL 76 (471)
Q Consensus 3 ~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l 76 (471)
+++|+|+ +.+||+|+.||+|+|||+.+++...... .........+.+|...|++++|+|++ .|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~----------~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF----------KMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE----------ECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc----------eeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 3556665 6799999999999999998765321000 00001235688999999999999864 89
Q ss_pred EEecCCCeEEEEECCCCceEEEeecCCCcceeEE--EEecCCCC-eEEEEEeCCCeEEEEeccccCcceeeEeeceee--
Q 012064 77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQA--KIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQG-- 151 (471)
Q Consensus 77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 151 (471)
++|+.||+|++||+.+++.......+|...|.++ .|+| ++ .+|++++.|++|++||+++++.... +.+|..
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~--~g~~~laS~S~D~tvklWD~~~~~~~~~--~~~~~~~~ 356 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD--FEDTVVSTVAVDGYFYIFNPKDIATTKT--TVSRFRGS 356 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT--TSCCEEEEEETTSEEEEECGGGHHHHCE--EEEECSCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC--CCCeEEEEeccCCeEEEEECCCCCcccc--cccccccC
Confidence 9999999999999997754444347899999999 5677 87 8999999999999999988776544 555543
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (471)
.|.+++|+|+++ .+++++.|++|++||++++.....+.. |...|.+++|+|+ +.+|++|+.||+|++|
T Consensus 357 ~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~g----------H~~~V~sva~Sp~-g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 357 NLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVS----------RETTITAIGVSRL-HPMVLAGSADGSLIIT 424 (524)
T ss_dssp SCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEEE----------CSSCEEEEECCSS-CCBCEEEETTTEEECC
T ss_pred cccceEeCCCcC-eEEEeCCCCcEEEEECcccccceeeec----------CCCceEEEEeCCC-CCeEEEEECCCEEEEE
Confidence 478999999984 689999999999999999887665543 5668999999998 6899999999999999
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCcc-cCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
|+....+. . .... ...+...+..++|+|+++.+.. .+...+|+...
T Consensus 425 d~~~~~~~-~-----------~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~------------------- 471 (524)
T 2j04_B 425 NAARRLLH-G-----------IKNSSATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTV------------------- 471 (524)
T ss_dssp BSCSSTTT-C-----------C------CCCCEEEECBCCSSSCEEEE--CCCCCCCC----------------------
T ss_pred echHhhcc-c-----------cccCccceeeeEEEEeccCCCCCeEEc--cCCceeccccc-------------------
Confidence 98653211 0 0000 0011235789999999985422 22222222210
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc---EEEEeeCCCeEEEEEcc
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE---YVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~---~l~~g~~dg~v~iwd~~ 373 (471)
.......+.+|... |.+++| +|+++ ++|+|+.||.|+||++.
T Consensus 472 ------------------~g~~~~~l~gh~~~--V~~Vaf-sp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 472 ------------------NDVSKAKIDAHGIN--ITCTKW-NETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ----------------------------CCCS--CCCEEE-CCSTTTTTEEEEECTTSEEEEEECS
T ss_pred ------------------CCcceeeecCCCce--EEEEEC-CCCCCccHHHHhhccCceEEEEEcc
Confidence 02345667788776 999999 99964 99999999999999984
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-37 Score=289.32 Aligned_cols=333 Identities=11% Similarity=0.141 Sum_probs=225.4
Q ss_pred CCCCCCC-CCcEEEEecCCCeEEEEEccc---CccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE
Q 012064 2 DDASNNN-NNKRARTSVDKALVDVWLREL---GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (471)
Q Consensus 2 ~~~~~~~-~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 77 (471)
.+++|+| ++++|++|+.||+|++||+.+ +... .....+ +|.+.|.+++|+|++++|+
T Consensus 67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~------------------~~~~~~-~h~~~v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY------------------SSSLTY-DCSSTVTQITMIPNFDAFA 127 (437)
T ss_dssp EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC------------------SCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred EEEEECCCCCCEEEEecCCceEEEeECcccccCccc------------------ceeeec-cCCCCEEEEEEeCCCCEEE
Confidence 3567889 999999999999999999986 3321 111223 5999999999999999999
Q ss_pred EecCCCeEEEEECC---CCceEEEee---------cC--CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 78 SGSDDRRVILWDWK---TERVKLSFH---------SG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 78 s~~~d~~i~iwd~~---~~~~~~~~~---------~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
+|+.||.|++||+. +++...... .. +...+.++.+....++.+|++++.||.|++||+.+++....
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 99999999999994 554433221 11 55667777743222899999999999999999988877665
Q ss_pred eEeec--eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC---CCce
Q 012064 144 KLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANL 218 (471)
Q Consensus 144 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~ 218 (471)
+.. |...|.+++|+|++ .++++++.||.|++||+++++....+... +...|.+++|+|. ++.+
T Consensus 208 --~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~s~~~~~ 275 (437)
T 3gre_A 208 --IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFG---------DHAPITHVEVCQFYGKNSVI 275 (437)
T ss_dssp --EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCT---------TCEEEEEEEECTTTCTTEEE
T ss_pred --EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecC---------CCCceEEEEeccccCCCccE
Confidence 555 88999999999998 58899999999999999998877665421 4457999976653 2679
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCC---CCCcCCCCc------ccC--CCccceEEEEEcCCCCeEEEee-CCcEEE
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQ---PADYFCPPN------LIG--DEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~------~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i 286 (471)
|++++.||.|++||+++++....+.... ....+.+.. ... .|...|.+++|+ ++++|++++ ++.|++
T Consensus 276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM 354 (437)
T ss_dssp EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence 9999999999999999876433221100 000001100 112 277889999999 778888888 779999
Q ss_pred EecCCCCCCCCCCCCCcccccc-ccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC--CcEEEEeeC
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSE-ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--CEYVVSGSD 363 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--g~~l~~g~~ 363 (471)
||+.++.....+.......... ...+.+....+... .+............|... |.+++| .++ +.+|++|+.
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~--I~~i~~-~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--MKRTSTHSVDDSLYHHDI--INSIST-CEVDETPLLVACDN 429 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--CC-------------CCC--EEEEEE-EESSSSEEEEEEET
T ss_pred EECCCcccceEEecccccCceEEEEEeecceEEEEEe--cccccccccCcccccccc--eeeEee-eccCCceEEEEEcC
Confidence 9998876544332211100000 00000000000000 000011112333446665 899998 776 889999999
Q ss_pred CCeEEEEE
Q 012064 364 CGRIFIWK 371 (471)
Q Consensus 364 dg~v~iwd 371 (471)
||.|+||+
T Consensus 430 dG~I~iw~ 437 (437)
T 3gre_A 430 SGLIGIFQ 437 (437)
T ss_dssp TSCEEEEC
T ss_pred CceEEEeC
Confidence 99999995
No 97
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.6e-34 Score=267.69 Aligned_cols=312 Identities=11% Similarity=0.087 Sum_probs=239.5
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEE-EEecCCCeEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILW 88 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l-~s~~~d~~i~iw 88 (471)
+.++++++.|+.|++||.++++++ +.+.+|. .+.+++|+|+|++| ++++.|+.|++|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~---------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVT---------------------ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSII 59 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEE---------------------EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEE---------------------EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEE
Confidence 356889999999999999988776 4566664 48999999999976 677789999999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEE-EeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (471)
|+.+++.+..+. .+ ..+.+++|+| ++++++. ++.++.|++||+.+++.... +. +...+.+++|+|+++.+++
T Consensus 60 d~~~~~~~~~~~-~~-~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~--~~-~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 60 DTATNNVIATVP-AG-SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGT--VK-TGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp ETTTTEEEEEEE-CS-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEE--EE-CSSSEEEEEECTTSSEEEE
T ss_pred ECCCCeEEEEEE-CC-CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEE--Ee-CCCCcceEEECCCCCEEEE
Confidence 999999877773 33 3899999999 9998765 45679999999988766543 33 4456899999999966668
Q ss_pred EEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCC
Q 012064 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 168 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (471)
+++.++.|++||+++++....+.. ...+.+++|+|++..++++++.++.|++||+++.+....
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------ 195 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSV-----------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------ 195 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEEC-----------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------
T ss_pred EeCCCCEEEEEECCCCcEEEEEec-----------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------
Confidence 888899999999999887766653 234689999999544447788899999999988753211
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEee----CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
. .+...+.+++|+|++++|++++ ++.|++||+.++
T Consensus 196 ---------~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------------------------------- 234 (391)
T 1l0q_A 196 ---------V-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------------------------- 234 (391)
T ss_dssp ---------E-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-------------------------------
T ss_pred ---------E-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-------------------------------
Confidence 1 1245688999999999888775 568999999763
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEE-EEeeCCCeEEEEEccCCeeeEEecCCCcceE---EEEEcC----
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEADRHVVN---CIEPHP---- 395 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l-~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~---~~~~s~---- 395 (471)
.....+..+.. +.+++| +|+|+++ ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|
T Consensus 235 -------~~~~~~~~~~~---~~~~~~-s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (391)
T 1l0q_A 235 -------KITARIPVGPD---PAGIAV-TPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPV 303 (391)
T ss_dssp -------EEEEEEECCSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCC
T ss_pred -------eEEEEEecCCC---ccEEEE-ccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccc
Confidence 23445555543 678888 9999987 5678899999999999999988877654421 122222
Q ss_pred --------CC----------CEEEEeecCCcEEEecCCCCCC
Q 012064 396 --------HS----------TVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 396 --------~~----------~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+. ..+...+.|...++|++..+..
T Consensus 304 ~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 304 YPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 11 2466667789999999987654
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.8e-36 Score=280.30 Aligned_cols=288 Identities=14% Similarity=0.118 Sum_probs=223.9
Q ss_pred CCCCCCCcE-EEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEecC
Q 012064 4 ASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSD 81 (471)
Q Consensus 4 ~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~~~ 81 (471)
++++|+... +++|+.||.|+||+++...... .....+.+|.+.|++++|+| ++++|++|+.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVD-----------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECC-----------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCC-----------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 345565544 4457899999999986432211 12246789999999999999 9999999999
Q ss_pred CCeEEEEECCCC-------ceEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccCcceeeEe--eceee
Q 012064 82 DRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLL--GKHQG 151 (471)
Q Consensus 82 d~~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~ 151 (471)
||+|++||+.++ +.+..+ .+|...|.+++|+| ++ .+|++++.||.|++||+.+++.... + ..|..
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~ 177 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLT--LGPDVHPD 177 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEE--ECTTTCCS
T ss_pred CCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEE--EecCCCCC
Confidence 999999999987 455555 78999999999999 87 6999999999999999988766554 5 67999
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceee-eeeEEEEEcCCCCceEEEE---eCCCe
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV-VNLNAIAIDPRNANLFAVA---GSDEY 227 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~---~~dg~ 227 (471)
.|.+++|+|++ ..+++++.|+.|++||+++++....+... +. ..+.+++|+|+ +.++++| +.|+.
T Consensus 178 ~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~ 246 (402)
T 2aq5_A 178 TIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRP---------HEGTRPVHAVFVSE-GKILTTGFSRMSERQ 246 (402)
T ss_dssp CEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECS---------SCSSSCCEEEECST-TEEEEEEECTTCCEE
T ss_pred ceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccC---------CCCCcceEEEEcCC-CcEEEEeccCCCCce
Confidence 99999999998 57899999999999999998877665211 22 23789999998 7889988 79999
Q ss_pred EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE-ee-CCcEEEEecCCCCCCCCCCCCCccc
Q 012064 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS-YN-DEFIYLFTQDMGLGPNPPPSSPVST 305 (471)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~-~~~i~i~d~~~~~~~~~~~~~~~~~ 305 (471)
|++||+++.+.. .......+...+.+++|+|++++|+. ++ ++.|++||+.++.
T Consensus 247 i~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~------------ 301 (402)
T 2aq5_A 247 VALWDTKHLEEP-------------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA------------ 301 (402)
T ss_dssp EEEEETTBCSSC-------------SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST------------
T ss_pred EEEEcCccccCC-------------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC------------
Confidence 999999876521 01112235667999999999998864 54 7799999998742
Q ss_pred cccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee
Q 012064 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~ 377 (471)
.....+..+.....+.+++| +|++.++++ .++.+++|++.+++.
T Consensus 302 -------------------------~~~~~l~~~~~~~~v~~~~~-sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 302 -------------------------PFLHYLSMFSSKESQRGMGY-MPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp -------------------------TCEEEEEEECCSSCCSEEEE-CCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred -------------------------cceEeecccccCCcccceEE-eccccccee--cceeEEEEEcCCCcE
Confidence 11334444432234899999 999998865 456999999987654
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.2e-37 Score=275.60 Aligned_cols=250 Identities=18% Similarity=0.215 Sum_probs=197.0
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC--CCCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--~g~~l~s~ 79 (471)
.+++|+|++++||+|+.|++|+|||+++++.. ....+.+|.++|.+++|+| ++++|++|
T Consensus 17 ~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-------------------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 17 HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-------------------LIADLRGHEGPVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp EEEEECGGGCEEEEEETTTEEEEEEEETTEEE-------------------EEEEEECCSSCEEEEEECCGGGSSCEEEE
T ss_pred EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-------------------EEEEEcCCCccEEEEEeCCCCCCCEEEEE
Confidence 35789999999999999999999999866421 2367889999999999986 48999999
Q ss_pred cCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCC--CeEEEEEeCCCeEEEEeccccCcc-eeeEeeceeeeEE
Q 012064 80 SDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAH 154 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~ 154 (471)
+.|++|++||+.+++ ....+ .+|...|.+++|+| + +.+|++++.|+.|++||+...... ....+.+|...+.
T Consensus 78 s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p--~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 78 SYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAP--HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154 (316)
T ss_dssp ETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECC--TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred ECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECC--CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence 999999999998874 44444 78999999999999 6 789999999999999999765322 1233567889999
Q ss_pred EEEEccCC----------------CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC---
Q 012064 155 KLAIEPGS----------------PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--- 215 (471)
Q Consensus 155 ~~~~~~~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--- 215 (471)
+++|+|+. ..+|++++.|+.|++||++........... .+ |...|.+++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----~~--h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----EA--HSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----BC--CSSCEEEEECCCCSSCS
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----cc--CCCceEEEEecCCCCCC
Confidence 99999973 147899999999999999765321111111 11 55689999999984
Q ss_pred CceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC
Q 012064 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
+.+|++++.|+.|++|+++...... ........|...|.+++|+|++++|++++ |+.|++|+...
T Consensus 228 ~~~las~s~D~~v~iw~~~~~~~~~-----------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDDASSNT-----------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCEEEEEETTCEEEEEECSSTTCCC-----------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CceEEEEcCCCeEEEEEccCccccc-----------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 3789999999999999997632100 01122344678899999999999999888 66899999753
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-35 Score=278.94 Aligned_cols=293 Identities=17% Similarity=0.254 Sum_probs=224.3
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeE
Q 012064 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (471)
Q Consensus 6 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i 85 (471)
..++++++++|+.||+|++||.++++.. ..+.+|.+.|.+++| ++++|++|+.||+|
T Consensus 139 ~~~d~~~l~~g~~dg~i~iwd~~~~~~~---------------------~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i 195 (435)
T 1p22_A 139 LQYDDQKIVSGLRDNTIKIWDKNTLECK---------------------RILTGHTGSVLCLQY--DERVIITGSSDSTV 195 (435)
T ss_dssp EECCSSEEEEEESSSCEEEEESSSCCEE---------------------EEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred EEECCCEEEEEeCCCeEEEEeCCCCeEE---------------------EEEcCCCCcEEEEEE--CCCEEEEEcCCCeE
Confidence 3457899999999999999999988776 678899999999999 78899999999999
Q ss_pred EEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce-eeEeeceeeeEEEEEEccCCCc
Q 012064 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPH 164 (471)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 164 (471)
++||+.+++.+..+ .+|...|.+++|++ +.+++++.||.|++||+.++.... ...+.+|...|.+++| ++ .
T Consensus 196 ~vwd~~~~~~~~~~-~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~ 267 (435)
T 1p22_A 196 RVWDVNTGEMLNTL-IHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-K 267 (435)
T ss_dssp EEEESSSCCEEEEE-CCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-T
T ss_pred EEEECCCCcEEEEE-cCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-C
Confidence 99999999988877 78999999999965 599999999999999998876553 2447789999999999 44 5
Q ss_pred EEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCC
Q 012064 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (471)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (471)
.+++++.||.|++||+++++....+.. +...+.+++++ +.++++|+.||.|++||+++++..
T Consensus 268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~----- 329 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTCEFVRTLNG----------HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACL----- 329 (435)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEE-----
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEEcC----------CCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEE-----
Confidence 789999999999999999988777654 45578899885 468999999999999999986532
Q ss_pred CCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
.....|...|.+++| ++++|++++ ++.|++||+..+.......
T Consensus 330 ----------~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------------------------ 373 (435)
T 1p22_A 330 ----------RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA------------------------ 373 (435)
T ss_dssp ----------EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT------------------------
T ss_pred ----------EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc------------------------
Confidence 234557888999999 678888888 6789999987643211100
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEc
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s 394 (471)
.......+.+|... |.+++| ++++|++|+.||.|++||+.+........ ...+...+.|.
T Consensus 374 -----~~~~~~~~~~h~~~--v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 374 -----GTLCLRTLVEHSGR--VFRLQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp -----TTTEEEEECCCSSC--CCCEEE---CSSCEEECCSSSEEEEEC-----------------------
T ss_pred -----cchheeeccCCCCC--eEEEEe---CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 01245667788776 888887 67899999999999999998765544332 22344444443
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.6e-35 Score=269.80 Aligned_cols=296 Identities=15% Similarity=0.174 Sum_probs=212.1
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC--CCCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--~g~~l~s~ 79 (471)
.++.|+|++++|++|+.||.|++||++++... ......+.+|.+.|.+++|+| ++++|++|
T Consensus 15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-----------------WELSDSWRAHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECSSSCC-----------------EEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-----------------ceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence 45779999999999999999999999965432 233467889999999999999 69999999
Q ss_pred cCCCeEEEEECCCC---------ceEEEeecCCCcceeEEEEecCCC--CeEEEEEeCCCeEEEEeccccCcceeeEe--
Q 012064 80 SDDRRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLL-- 146 (471)
Q Consensus 80 ~~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 146 (471)
+.||.|++||+.++ +.+..+ .+|...|.+++|+| + ++++++++.||.|++||+.+++.......
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAP--AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcC--CCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence 99999999999887 334454 78999999999999 8 99999999999999999988776543211
Q ss_pred ---------eceeeeEEEEEEccC--CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC
Q 012064 147 ---------GKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (471)
Q Consensus 147 ---------~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (471)
..|...+.+++|+|+ ....+++++.++.+.+|+...++........ + +...|.+++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~--h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP------G--HKSLIRSISWAPSI 226 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC------C--CCSCEEEEEECCCS
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC------C--CCcceeEEEECCCC
Confidence 257788999999997 2368999999999988887777653222211 1 55689999999984
Q ss_pred C---ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC-----CcEEEE
Q 012064 216 A---NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----EFIYLF 287 (471)
Q Consensus 216 ~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~i~i~ 287 (471)
+ .+|++++.||.|++||++....... ..............+....+..+.. ..+.+|
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLA---------------SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC------------------------------------------------------C
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccc---------------cCCcccceeccCCCcccccccccccccccceeeeec
Confidence 2 7999999999999999987542111 1111122233333333333333321 123333
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeE
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v 367 (471)
+... ...+..+.+|... |.+++| +|++++|++|+.||.|
T Consensus 292 ~~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~~~dg~v 330 (351)
T 3f3f_A 292 SNLQ--------------------------------------VELLSEHDDHNGE--VWSVSW-NLTGTILSSAGDDGKV 330 (351)
T ss_dssp CSEE--------------------------------------EEEEEEECTTSSC--EEEEEE-CSSSCCEEEEETTSCE
T ss_pred cccc--------------------------------------ccEEEEEeccccc--EEEEEE-cCCCCEEEEecCCCcE
Confidence 3221 3456677788876 999999 9999999999999999
Q ss_pred EEEEccCCeeeEEe
Q 012064 368 FIWKKKGGELIRVI 381 (471)
Q Consensus 368 ~iwd~~~~~~~~~~ 381 (471)
++||+.+++....+
T Consensus 331 ~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 331 RLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEECTTSCEEEE
T ss_pred EEEecCcCcchhhe
Confidence 99999887555433
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4e-36 Score=279.21 Aligned_cols=291 Identities=14% Similarity=0.119 Sum_probs=224.8
Q ss_pred cEEEEEEcCCCCEE-EEecCCCeEEEEECCCCceE---EEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc
Q 012064 63 CVNTVSFNTDGDIL-ISGSDDRRVILWDWKTERVK---LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (471)
Q Consensus 63 ~V~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 138 (471)
....++++|+...+ ++++.||.|+||++...... .....+|.+.|.+++|+|. ++++|++++.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCC
Confidence 34568889887544 45788999999999654321 1223689999999999984 6789999999999999999887
Q ss_pred Cc-----ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 139 GG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 139 ~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
.. .....+.+|...|.+++|+|++++++++++.|+.|++||+++++....+.... +...|.+++|+|
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~v~~~~~~~ 186 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV--------HPDTIYSVDWSR 186 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT--------CCSCEEEEEECT
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC--------CCCceEEEEECC
Confidence 42 22344788999999999999986689999999999999999988766652010 556899999999
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc-ceEEEEEcCCCCeEEEe----eCCcEEEEe
Q 012064 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSY----NDEFIYLFT 288 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~----~~~~i~i~d 288 (471)
+ +.+|++++.||.|++||+++++... .....|.. .+.++.|+|++++|+++ .++.|++||
T Consensus 187 ~-~~~l~~~~~d~~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 187 D-GALICTSCRDKRVRVIEPRKGTVVA--------------EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp T-SSCEEEEETTSEEEEEETTTTEEEE--------------EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred C-CCEEEEEecCCcEEEEeCCCCceee--------------eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 8 7899999999999999999876321 12123444 48899999999999998 366899999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeeeeCCCCcEEE-EeeCCCe
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV-SGSDCGR 366 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~g~~l~-~g~~dg~ 366 (471)
+.+... ...... .+... +.+++| +|++++|+ +|+.||.
T Consensus 252 ~~~~~~-------------------------------------~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 252 TKHLEE-------------------------------------PLSLQELDTSSG--VLLPFF-DPDTNIVYLCGKGDSS 291 (402)
T ss_dssp TTBCSS-------------------------------------CSEEEECCCCSS--CEEEEE-ETTTTEEEEEETTCSC
T ss_pred CccccC-------------------------------------CceEEeccCCCc--eeEEEE-cCCCCEEEEEEcCCCe
Confidence 986421 112222 23333 788898 99999997 5567999
Q ss_pred EEEEEccCCee-eEEecC--CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 367 IFIWKKKGGEL-IRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 367 v~iwd~~~~~~-~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
|++||+.+++. +..+.. |...|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 292 i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 292 IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99999998874 444444 4589999999999998875 466999999987654
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.3e-34 Score=272.06 Aligned_cols=286 Identities=10% Similarity=0.068 Sum_probs=227.2
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe----ecCCCcceeEEEEecCCCCeEEEEEeCCCeE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 130 (471)
..+..+. .+.+++|+|++.++++++.++.|++||+.+++....+ ..+|...|.+++|+| ++..+++++.|+.|
T Consensus 117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v 193 (433)
T 3bws_A 117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAV 193 (433)
T ss_dssp EEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEE
T ss_pred EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEE
Confidence 4455443 4569999998888888889999999999999887543 247889999999999 99999999999999
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
++||+.+++.... +..|...+.+++|+|+++.++++++.|+.|++||+++++....+. ....+.+++
T Consensus 194 ~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~~~~~~ 260 (433)
T 3bws_A 194 HVFDLKTLAYKAT--VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-----------KIGLPRGLL 260 (433)
T ss_dssp EEEETTTCCEEEE--EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------CCSEEEEEE
T ss_pred EEEECCCceEEEE--EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------CCCCceEEE
Confidence 9999988766554 667888999999999997655677789999999999887765544 223589999
Q ss_pred EcCCCCceEEEEe--------CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE-Eee-
Q 012064 211 IDPRNANLFAVAG--------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV-SYN- 280 (471)
Q Consensus 211 ~~p~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~- 280 (471)
|+|+ +.++++++ .||.|++||+++++.... ..+...+.+++|+|+++.++ +++
T Consensus 261 ~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 261 LSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT----------------IGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE----------------EEEEECEEEEEECSSTTEEEEEETT
T ss_pred EcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEee----------------ccCCCCcceEEECCCCCEEEEEecC
Confidence 9999 56777776 588999999987653211 12345788999999997654 434
Q ss_pred CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 281 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
++.+++||+.++ .....+. +... +.+++| +|+|+++++
T Consensus 324 ~~~v~v~d~~~~--------------------------------------~~~~~~~-~~~~--~~~~~~-s~dg~~l~~ 361 (433)
T 3bws_A 324 CSKIEVYDLKEK--------------------------------------KVQKSIP-VFDK--PNTIAL-SPDGKYLYV 361 (433)
T ss_dssp TTEEEEEETTTT--------------------------------------EEEEEEE-CSSS--EEEEEE-CTTSSEEEE
T ss_pred CCEEEEEECCCC--------------------------------------cEEEEec-CCCC--CCeEEE-cCCCCEEEE
Confidence 678999999764 2223333 2232 778998 999999988
Q ss_pred eeC---------------CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeec-CCcEEEecCCC
Q 012064 361 GSD---------------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI-ESDIKILTPNA 416 (471)
Q Consensus 361 g~~---------------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 416 (471)
++. ||.|++||+.+++.+..+..+ ..+.+++|+|++++|++++. |+.|++|+++.
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 776 579999999999998888764 57899999999999988875 99999999864
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.5e-35 Score=264.87 Aligned_cols=294 Identities=11% Similarity=0.070 Sum_probs=210.7
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEE-EEEeCCCeEEEE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHA 133 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw 133 (471)
..+++|.+.|++++|+|||++|++|+.++ +++||+.+++..... +...+..+++.+ +++.+ ++++.|++|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLH--RTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECT--TSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcC--CCCEEEEEECCccEEEEE
Confidence 46688999999999999999999998775 789999887765543 222578888888 77776 567778999999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEc
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAID 212 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (471)
|..+++.+.. +. +...|.+++++++. ++++ .|+.|++||++++ +....+.. ....++++
T Consensus 87 d~~~~~~~~~--~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~-------------~~~~~~~s 146 (355)
T 3vu4_A 87 DDVKKQDVSR--IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR-------------FGGVCEFS 146 (355)
T ss_dssp ETTTTEEEEE--EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE-------------EEEEEEEE
T ss_pred ECCCCcEEEE--EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc-------------CCceEEEE
Confidence 9988876654 43 66789999999864 3333 4789999999988 55554432 23455666
Q ss_pred CCCCceEEE--EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCC-CcccCCCccceEEEEEcCCCCeEEEee-CCc-EEEE
Q 012064 213 PRNANLFAV--AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLF 287 (471)
Q Consensus 213 p~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~-i~i~ 287 (471)
+ .+++. |+.+|.|++||+++.+...............+ .....+|...|.+++|+|+|++|++++ |++ |++|
T Consensus 147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp T---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred c---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 6 34554 68999999999987542111000000001112 345677899999999999999999998 667 9999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee-c-CCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-G-HRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
|+.++ ..+..+. + |... |.+++| +|+|++|++++.|+
T Consensus 224 d~~~~--------------------------------------~~~~~~~~g~h~~~--v~~~~~-s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 224 KTEDG--------------------------------------VLVREFRRGLDRAD--VVDMKW-STDGSKLAVVSDKW 262 (355)
T ss_dssp ETTTC--------------------------------------CEEEEEECTTCCSC--EEEEEE-CTTSCEEEEEETTC
T ss_pred ECCCC--------------------------------------cEEEEEEcCCCCCc--EEEEEE-CCCCCEEEEEECCC
Confidence 99874 3455666 4 7665 999999 99999999999999
Q ss_pred eEEEEEccCCeee--EEecC---------------------CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 366 RIFIWKKKGGELI--RVIEA---------------------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 366 ~v~iwd~~~~~~~--~~~~~---------------------h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
.|++||+..+... ..+.. +......++|+||+++|++++.||.+++|++..++
T Consensus 263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999765311 11111 12234679999999999999999999999987654
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.2e-34 Score=268.42 Aligned_cols=260 Identities=15% Similarity=0.232 Sum_probs=209.2
Q ss_pred cCCCcceeEEEEecCCC-CeEEEEEeCCCeEEEEecccc--------CcceeeEeeceeeeEEEEEEccCCCcEEEEEec
Q 012064 101 SGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILER--------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 171 (471)
..|.+.|++++|+| + +.+|++++.||.|++|++... .......+.+|...+.+++|+|+++.+|++++.
T Consensus 125 ~~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 125 INHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EcCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 57999999999999 7 678999999999999999762 123334478899999999999998658999999
Q ss_pred CCeEEEEeccCCccce-eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCc
Q 012064 172 DGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (471)
Q Consensus 172 dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (471)
||.|++||++.+.... .+.... ... .+...|.+++|+|+++.+|++++.||.|++||+++....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~--~~~--~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----------- 267 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKN--IFT--GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----------- 267 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSE--EEC--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----------
T ss_pred CCeEEEEeCCCCCCCCceeccce--eec--CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----------
Confidence 9999999998854321 111000 000 155679999999976889999999999999999976311
Q ss_pred CCCCcccCCCccceEEEEEcCCCC-eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcc
Q 012064 251 FCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (471)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (471)
.+......|...|++++|+|++. ++++++ ++.|++||++..
T Consensus 268 -~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~------------------------------------ 310 (430)
T 2xyi_A 268 -KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL------------------------------------ 310 (430)
T ss_dssp -SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT------------------------------------
T ss_pred -cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC------------------------------------
Confidence 11233446788999999999987 577777 678999999863
Q ss_pred cccCCeeeecCCceeEeeeeeeeCCCCc-EEEEeeCCCeEEEEEccC--------------CeeeEEecCCCcceEEEEE
Q 012064 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKG--------------GELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~g~-~l~~g~~dg~v~iwd~~~--------------~~~~~~~~~h~~~v~~~~~ 393 (471)
...+..+.+|... +.+++| +|+++ +|++++.||.|++||+.. .+.+..+.+|...|.+++|
T Consensus 311 -~~~~~~~~~h~~~--v~~i~~-sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 311 -KLKLHSFESHKDE--IFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp -TSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred -CCCeEEeecCCCC--EEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 2346677788776 999999 99985 689999999999999977 3667788899999999999
Q ss_pred cCCCC-EEEEeecCCcEEEecCCCCC
Q 012064 394 HPHST-VLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 394 s~~~~-~l~s~~~dg~i~iw~~~~~~ 418 (471)
+|+++ +|++++.||.|+||++....
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCCCCEEEEEECCCCEEEeEccccc
Confidence 99999 99999999999999998643
No 106
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-36 Score=277.36 Aligned_cols=265 Identities=15% Similarity=0.139 Sum_probs=201.7
Q ss_pred EeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCC--ceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 56 ~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
.++.|.++|++++|+|+|++||+|+.|+.|++||+.++ +.+..+ .+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAP--KSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECT--TTCCEEEEETTSSEEEC
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeC--CCCEEEEEeCCCeEEEE
Confidence 34457789999999999999999999999999999988 454444 78999999999999 99999999999999999
Q ss_pred eccccC-cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc---ceeeeecccCCcCcceeeeeeEEE
Q 012064 134 QILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 134 d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
|+.+++ ......+..|...|.+++|+|++ ..|++++.|+.|++||+++++. ...+... +...|.++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~~v~~~ 152 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------LRSTILSL 152 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSS---------CCSCEEEE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecc---------cCCCeEEE
Confidence 998877 33334477899999999999998 5789999999999999998864 3333210 45579999
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEec
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~ 289 (471)
+|+|+ +.+|++++.|+.|++||++..+....... .+.+..+
T Consensus 153 ~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~------------- 193 (377)
T 3dwl_C 153 DWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEA-------------------------SVWGSRL------------- 193 (377)
T ss_dssp EECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCS-------------------------CSSCSCC-------------
T ss_pred EEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccc-------------------------ccccccc-------------
Confidence 99998 68999999999999999986542211000 0000000
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
........+ +|... +.+++| +|++++|++++.||.|++
T Consensus 194 --------------------------------------~~~~~~~~~-~~~~~--v~~~~~-sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 194 --------------------------------------PFNTVCAEY-PSGGW--VHAVGF-SPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp --------------------------------------CEEEEEECC-CCSSS--EEEEEE-CTTSSCEEEEETTTEEC-
T ss_pred --------------------------------------chhhhhhcc-cCCce--EEEEEE-CCCCCEEEEEeCCCcEEE
Confidence 001122333 56655 899999 999999999999999999
Q ss_pred EEccCCee----eEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 370 WKKKGGEL----IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 370 wd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
||+.+++. +..+.+|...|.+++|+|++++|++++.|+.+ +|+..
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99999887 78889999999999999999999999866666 66655
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-34 Score=263.50 Aligned_cols=278 Identities=9% Similarity=0.054 Sum_probs=219.5
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCC-EEEEec
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGS 80 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~-~l~s~~ 80 (471)
.+++|+|++++|++|+.||.|++|++++++.. .....+.+|...|.+++|+|+++ +|++|+
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc------------------ccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence 35678999999999999999999999976621 01134558999999999999999 999999
Q ss_pred CCCeEEEEEC-CCCceEEEeecC--CCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc---------cCcceeeEeec
Q 012064 81 DDRRVILWDW-KTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---------RGGVETKLLGK 148 (471)
Q Consensus 81 ~d~~i~iwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~ 148 (471)
.||.|++||+ .+++. ..+ .+ |...|.+++|+| ++++++++.|+.|++||+.+ .+.... +.
T Consensus 77 ~dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~- 148 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-QAL-TNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TK- 148 (342)
T ss_dssp TTSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SS-
T ss_pred CCCeEEEEEeccCCce-Eec-cccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeE--Ee-
Confidence 9999999999 87765 444 67 999999999997 67899999999999999987 655543 44
Q ss_pred eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCcceeeeeeEEEEEcC-CCCceEEEEeCCC
Q 012064 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSDE 226 (471)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg 226 (471)
|...+.+++|+|++ +++++.|+.|++||+++ +.......... +...+.+++|+| + +.++++++.||
T Consensus 149 ~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~i~~i~~~~~~-~~~l~~~~~dg 216 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESG--------LKYQIRDVALLPKE-QEGYACSSIDG 216 (342)
T ss_dssp SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECS--------CSSCEEEEEECSGG-GCEEEEEETTS
T ss_pred eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecC--------CCCceeEEEECCCC-CCEEEEEecCC
Confidence 88999999999875 89999999999999998 55432222111 445789999999 8 68999999999
Q ss_pred eEEEEEcCCC--ccCCCCCCCCCCCcCCCCcccC---------CCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCC
Q 012064 227 YTRLYDIRKY--KWDGSTDFGQPADYFCPPNLIG---------DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (471)
Q Consensus 227 ~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~ 294 (471)
.+++|+++.. .... ....... .|...|.+++|+|++++|++++ ++.|++||+.++
T Consensus 217 ~i~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-- 283 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNS-----------SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-- 283 (342)
T ss_dssp EEEEEECCTTCCSTTC-----------TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--
T ss_pred cEEEEEEcCCCccccc-----------ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH--
Confidence 9999999875 1000 0111122 2345899999999999999888 668999999874
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecC-CceeEeeeeeeeCCCCcEEEEeeCCCe-EEEEE
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWK 371 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~g~~l~~g~~dg~-v~iwd 371 (471)
..+..+.+| ... |.+++ |++++|++|+.||. .+.+.
T Consensus 284 ------------------------------------~~~~~~~~~h~~~--v~~~~---~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 284 ------------------------------------KKIKNFAKFNEDS--VVKIA---CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ------------------------------------EEEEECCCCSSSE--EEEEE---ECSSEEEEEEECTHHHHCSS
T ss_pred ------------------------------------hHhhhhhcccCCC--ceEec---CCCCeEEEEecCCccccccc
Confidence 345566676 665 77776 89999999999998 44443
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=293.44 Aligned_cols=260 Identities=16% Similarity=0.280 Sum_probs=207.2
Q ss_pred EEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECC--CCceEEEeecCCCcceeEEEEecCCC--CeEEEEEeCCCeE
Q 012064 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQV 130 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i 130 (471)
..+.+|.+.|++++|+|+|++|++|+.||.|++||+. +++....+ .+|.+.|.+++|+| + +++|++++.||.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAH--PKFGTILASCSYDGKV 79 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--TTSCSEEEEEETTSCE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecC--CCCCCEEEEEeCCCeE
Confidence 5678999999999999999999999999999999998 44555555 78999999999998 6 9999999999999
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccC--CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
++||+.+++......+..|...|.+++|+|+ + ..+++++.||.|++||++++.......... +...|.+
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--------~~~~v~~ 150 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVNS 150 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEEC--------CSSCEEE
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeec--------CCCceEE
Confidence 9999988764444557889999999999998 6 689999999999999999885443332211 5567999
Q ss_pred EEEcCC------------CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeE
Q 012064 209 IAIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (471)
Q Consensus 209 ~~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (471)
++|+|. ++.++++|+.||.|++||+++....
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~------------------------------------- 193 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------------- 193 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------------------------------------
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------------------------------------
Confidence 999995 2566777777777777776543100
Q ss_pred EEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCC--
Q 012064 277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-- 354 (471)
Q Consensus 277 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-- 354 (471)
......+.+|... |.+++| +|+
T Consensus 194 -----------------------------------------------------~~~~~~~~~h~~~--V~~l~~-sp~~~ 217 (753)
T 3jro_A 194 -----------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTVL 217 (753)
T ss_dssp -----------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCCS
T ss_pred -----------------------------------------------------ceeeeeecCCCCc--EEEEEe-ccCCC
Confidence 1122344556665 899998 999
Q ss_pred -CcEEEEeeCCCeEEEEEccCCe-----eeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 355 -CEYVVSGSDCGRIFIWKKKGGE-----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 355 -g~~l~~g~~dg~v~iwd~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+++|++|+.||.|++||+.+++ .......|.+.|++++|+|++++|++++.||.|++|++..+..
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 9999999999999999998864 3334456888999999999999999999999999999986543
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.7e-35 Score=266.66 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=214.9
Q ss_pred CCCCCCCC---CcEEEEecCCCeEEEEEccc-CccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE
Q 012064 2 DDASNNNN---NKRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (471)
Q Consensus 2 ~~~~~~~~---~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 77 (471)
.+++|+|+ +++|++|+.||.|++||+++ ++.. ...+.+|.+.|.+++|+|++++|+
T Consensus 43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--------------------~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--------------------PKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--------------------EEEEEECSSCEEEEEECTTSSEEE
T ss_pred EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--------------------EEEeccccCCEEEEEECcCCCEEE
Confidence 35678898 69999999999999999997 4433 256788999999999999999999
Q ss_pred EecCCCeEEEEECCCCceEEEeecCCCcceeEEEE--ecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKI--MPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
+++.||.|++||+.+++.... ..|...|.+++| +| ++++|++++.||.|++||+.+++.... +..+ ..+.+
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~-~~~~~ 175 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAP--NYSCVMTGSWDKTLKFWDTRSSNPMMV--LQLP-ERCYC 175 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECS--SCEEEEEEETTSEEEEECSSCSSCSEE--EECS-SCEEE
T ss_pred EEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCC--CCCEEEEccCCCcEEEEECCCCcEEEE--EecC-CCceE
Confidence 999999999999999887653 479999999999 66 999999999999999999998877655 4434 35666
Q ss_pred EEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC---CceEEEEeCCCeEEEEE
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---ANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~i~d 232 (471)
+.+.++ .+++++.++.+++|+++............ ......++++.++. ...+++++.||.|++||
T Consensus 176 ~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 176 ADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESP--------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp EEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCS--------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred EEecCC---eeEEEeCCCcEEEEEeccccchhhhcccc--------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 666653 57888999999999998765433221111 12234555554431 12399999999999999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCc------------cceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCC
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQ------------VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~ 299 (471)
++...... .......|. ..|.+++|+|++++|++++ ++.|++||+.++
T Consensus 245 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~------- 305 (368)
T 3mmy_A 245 INPPNPAK------------DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR------- 305 (368)
T ss_dssp SSCSCHHH------------HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------
T ss_pred cCCCCccc------------cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-------
Confidence 98763200 011122222 3799999999999999988 678999999863
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
..+..+.+|... +.+++| +|+|++|++|+.|+..+.|++
T Consensus 306 -------------------------------~~~~~~~~~~~~--v~~~~~-s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 306 -------------------------------TKLKTSEQLDQP--ISACCF-NHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -------------------------------EEEEECCCCSSC--EEEEEE-CTTSSCEEEEECCCSTTCGGG
T ss_pred -------------------------------cEEEEecCCCCC--ceEEEE-CCCCCeEEEEecccccccccc
Confidence 445666777776 999999 999999999999876554443
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=266.84 Aligned_cols=252 Identities=19% Similarity=0.213 Sum_probs=204.8
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC--CCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~--g~~l~s~ 79 (471)
.+++|+|++++|++|+.||.|++||++.+. ......+.+|.+.|++++|+|+ +++|++|
T Consensus 15 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 15 HDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTE-------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCc-------------------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence 356799999999999999999999998322 1233678899999999999987 9999999
Q ss_pred cCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCC--CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 80 SDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
+.||.|++||+.+++ .+..+ ..|...|.+++|+| + +.+|++++.||.|++||+..........+..|...|.+
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 152 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 152 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred ccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCC--CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence 999999999999887 44444 68999999999999 8 89999999999999999988866665567889999999
Q ss_pred EEEcc-------------CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC--CceEE
Q 012064 156 LAIEP-------------GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFA 220 (471)
Q Consensus 156 ~~~~~-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~ 220 (471)
++|+| ++ ..+++++.|+.|++||++++.......... .+ +...|.+++|+|++ +.+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~--h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTL----EG--HSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp EEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEE----CC--CSSCEEEEEECCCCSSSEEEE
T ss_pred EEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEE----ec--ccCcEeEEEECCCCCCCCeEE
Confidence 99999 46 688999999999999999876443221100 01 55689999999985 68999
Q ss_pred EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
+++.||.|++||++..+.... ........+...|.+++|+|++++|++++ ++.|++|++...
T Consensus 226 s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 226 SVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEeCCCEEEEEeCCCCCccce----------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 999999999999987642110 00111233677899999999999999877 668999998753
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=261.76 Aligned_cols=275 Identities=10% Similarity=0.060 Sum_probs=208.8
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc---------c
Q 012064 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---------R 138 (471)
Q Consensus 68 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~ 138 (471)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+| + +++++.|++|++|+... .
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 445678999999999999999999999887773 56788899998 6 99999999999997653 2
Q ss_pred CcceeeEeeceeeeEEEEEEcc--CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 139 GGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
+... .....|...|.+++|+| ++ .++++++.||.|++||+++++........ +...+.+++|+|+ +
T Consensus 115 ~~~~-~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------~~~~i~~~~~~pd-g 182 (343)
T 3lrv_A 115 KVLR-EIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAK---------SDVEYSSGVLHKD-S 182 (343)
T ss_dssp CEEE-EEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCC---------SSCCCCEEEECTT-S
T ss_pred ceeE-EeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecC---------CCCceEEEEECCC-C
Confidence 2111 11234668899999999 88 57899999999999999998875443221 3346899999998 7
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCC-CccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-EQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~ 295 (471)
.+|++|+.||.|++||+++++.. ...+.. |...|.+++|+|++.+|++++++.|++||+++....
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~--------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQA--------------SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGT 248 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSC--------------CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTC
T ss_pred CEEEEEcCCCEEEEEECCCCCCC--------------ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcc
Confidence 89999999999999999987532 122233 788999999999999999999889999999875432
Q ss_pred CCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEccC
Q 012064 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG 374 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~~ 374 (471)
.. ...+..|.....-.+++| +|+|++|++++. |+.|++|++..
T Consensus 249 ~~-----------------------------------~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 249 LA-----------------------------------YPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp BS-----------------------------------SCCCBC-----CCEEEEE-CTTSSEEEEEETTTTEEEEEEECT
T ss_pred ee-----------------------------------ecccccccccccceEEEE-CCCCCEEEEecCCCCcEEEEEEcc
Confidence 22 111112222200135888 999999999888 99999999966
Q ss_pred CeeeEEecCCCcceEEEEEcC---CCCEEEEeecCCcEEEecCCC
Q 012064 375 GELIRVIEADRHVVNCIEPHP---HSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 375 ~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~ 416 (471)
....... .++..++|+| +.+.+++++.||.+.++-...
T Consensus 293 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 293 KTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 5433322 5688899998 888999999999999886544
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=270.68 Aligned_cols=277 Identities=13% Similarity=0.114 Sum_probs=208.2
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 138 (471)
.-...|.+++|||||+++||++.|++|+ |...++. + .+|...|++++|+| +| .++.+.+|+ .
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l-~gh~~~v~~V~FsP--dg-------~~~~~~~~~---~ 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---I-NCNSKNLFHVKEFP--LE-------FENKLDFEL---A 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---C-SSBGGGTEEEEEEC--CC-------CCCTTTTSC---C
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---e-cCCCccEEEEEECC--CC-------CcceEEEEe---C
Confidence 3458899999999999999999999999 7555543 3 68999999999999 88 455544554 3
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
+......+ .|...|.+++|+|+| ..+++++.||.+++||.++ ....+. +.. ......+.+++|+|+ +++
T Consensus 75 ~~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~-----~~~~~sv~svafSPD-G~~ 143 (588)
T 2j04_A 75 QQNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKG-----NLSSRTYHCFEWNPI-ESS 143 (588)
T ss_dssp CSSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSS-----CSTTTCEEEEEECSS-SSC
T ss_pred CCceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCC-----ccccccEEEEEEcCC-CCE
Confidence 33222112 457889999999999 5789999999999999544 222222 110 001235899999999 799
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc----cCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL----IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~ 294 (471)
|++|+.||+|++||+..+++... .+..... ..+|...|.+++|+|+| +++++.|+++++|++..+..
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~--------~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTP--------EFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCC--------CCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred EEEEcCCCEEEEEECCCCccccc--------cceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence 99999999999999987642110 0000111 24577899999999999 65666688999999976421
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
. .....+ .+|... |.+++| + |+.||+++ ++.|++||+.
T Consensus 215 ~-----------------------------------~~~~tL~~~h~~~--V~svaF-s--g~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 215 Q-----------------------------------PVSRMIQNASRRK--ITDLKI-V--DYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp C-----------------------------------CCEEEEECCCSSC--CCCEEE-E--TTEEEEEC-SSEEEEEETT
T ss_pred c-----------------------------------cceeeecccccCc--EEEEEE-E--CCEEEEEe-CCeEEEEECC
Confidence 0 012345 356654 999999 7 68999887 6999999998
Q ss_pred CCeeeEEecCCCcceEEEEE--cCCCCEEEEeecCCcEEEecCC
Q 012064 374 GGELIRVIEADRHVVNCIEP--HPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 374 ~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+++......+|.+.|..++| +|++..|+++++||+ ++|..+
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 88774444489999999999 999999999999999 999987
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=266.54 Aligned_cols=310 Identities=10% Similarity=0.067 Sum_probs=222.0
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eEEEee-------------------------------------
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH------------------------------------- 100 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~------------------------------------- 100 (471)
..++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977665 56799999999998 544442
Q ss_pred ----------------cCCCcceeEEEEecCCCCeEE-EEEeCCCeEEEEecc--ccCcceeeEeeceeeeEEEEEEccC
Q 012064 101 ----------------SGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQIL--ERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 101 ----------------~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
.+|.+.|.+++|+| ++++| ++++.||.|++||+. +++.........|...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 12344799999999 99996 889999999999998 6666554222356788999999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCccce----eeeecccCCcCcceeeeeeEEEEEcCC--CCceEEEEeCCCeEEEEEcCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~ 235 (471)
+ ..|++++.+|.+++|++.+++... .+.. +...|.+++|+|+ ++.+|++++.|+.|++||+++
T Consensus 161 ~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 161 D-TTVIIADKFGDVYSIDINSIPEEKFTQEPILG----------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp S-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEE----------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred C-CEEEEEeCCCcEEEEecCCcccccccceeeec----------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 9 578999999999999998877543 2221 5568999999997 257999999999999999987
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
++.. .....+|...|.+++|+ ++++|++++ ++.|++||+.+++....+..... .........
T Consensus 230 ~~~~--------------~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~- 292 (450)
T 2vdu_B 230 CFIV--------------DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQH- 292 (450)
T ss_dssp TTCE--------------EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH-HGGGCCTTS-
T ss_pred Ccee--------------eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh-hhhhhhhcc-
Confidence 6521 22345678899999999 999999988 66899999988653322210000 000000000
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-CCCeEEEEEc--cCC---eeeEEecCCCcce
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGG---ELIRVIEADRHVV 388 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~--~~~---~~~~~~~~h~~~v 388 (471)
.. ...............+.++.| +|++++|++++ .|+.|++|++ .++ +.+..+..| +.|
T Consensus 293 ----------~~---~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 293 ----------LA---PPRFQNENNDIIEFAVSKIIK-SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp ----------BC-------------CBCCCEEEEEE-CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred ----------cc---cccccccccccceEEEEEEEE-eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 00 000000000011123788998 99999999998 8999999999 565 777788888 789
Q ss_pred EEEEEcCCCCEEEEeec------CCcEEEecCCC
Q 012064 389 NCIEPHPHSTVLASSGI------ESDIKILTPNA 416 (471)
Q Consensus 389 ~~~~~s~~~~~l~s~~~------dg~i~iw~~~~ 416 (471)
.+++|+|++.+++.++. +..|.+|.+..
T Consensus 358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999996444444443 45588888754
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.9e-34 Score=266.31 Aligned_cols=328 Identities=12% Similarity=0.005 Sum_probs=204.1
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCccccccc---cc---eecccccceeee--eeeEEeccccccEEEEEEcCCCCEEE
Q 012064 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNF---AL---RRRASEDLVLRL--GIYAKLDKHRGCVNTVSFNTDGDILI 77 (471)
Q Consensus 6 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~---~~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~s~~g~~l~ 77 (471)
++++...+++++.|+.|++|+........... .. ...+.......+ ........|...+....+++++.+||
T Consensus 26 ~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 26 QSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp TSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 44555555555668899999876333221100 00 000000000000 11122234445555555666778999
Q ss_pred EecCCCeEEEEECCCCceEEE----eecCCCcceeEEEEecC------CCCeEEEEEeCCCeEEEEeccccCcceeeEee
Q 012064 78 SGSDDRRVILWDWKTERVKLS----FHSGHNDNVFQAKIMPF------TDDRSIVTCAADGQVRHAQILERGGVETKLLG 147 (471)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~~------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 147 (471)
+|+.|++|+|||..+++.... .+.+|.+.|++++|+|. .|+++|++++.|++|++||+.++..... +.
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--~~ 183 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--GY 183 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--EE
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--ec
Confidence 999999999999998875432 24789999999999972 2688999999999999999987765544 66
Q ss_pred ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC---------------cCcceeeeeeEEEEEc
Q 012064 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---------------RRNYMTVVNLNAIAID 212 (471)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~ 212 (471)
.|...+.+++|+|+++++|++++.|+.|++||+++++............ .....+...+.++.|+
T Consensus 184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence 7889999999999987789999999999999999886544332111100 0001144567888887
Q ss_pred -CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 213 -PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 213 -p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
|+ +..+++++.|+.+++||+...+... ....+...+..+.+.|+.+.+
T Consensus 264 ~~d-g~~l~s~s~d~~i~vwd~~~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~--------------- 312 (393)
T 4gq1_A 264 GSD-GSGILAMCKSGAWLRWNLFANNDYN---------------EISDSTMKLGPKNLLPNVQGI--------------- 312 (393)
T ss_dssp TTT-TCEEEEECTTSEEEEEEC----------------------------------CCSCSEEEE---------------
T ss_pred cCC-CCEEEEEeCCCCEEEEECccCCCCc---------------eEeeecCccccEEEccccccc---------------
Confidence 55 7899999999999999998765221 112233334444444432111
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeC-CCCcEEEEeeCCCeEEEE
Q 012064 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG-PKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-~~g~~l~~g~~dg~v~iw 370 (471)
..+.. .....++. +++.++++|+.||.|++|
T Consensus 313 ---------------------------------------------~~~~~---~~~~~~~~~~~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 313 ---------------------------------------------SLFPS---LLGACPHPRYMDYFATAHSQHGLIQLI 344 (393)
T ss_dssp ---------------------------------------------CSSCC---SSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------------------cccCc---ceeEEEccCCCCEEEEEECCCCEEEEE
Confidence 11111 11222313 355677889999999999
Q ss_pred EccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 371 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
|+.+++....+.+|..+|.+++|+|||++||+++.+| +.+|++.
T Consensus 345 d~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 345 NTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999888888999999999999999999998766 6666543
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=286.20 Aligned_cols=253 Identities=19% Similarity=0.208 Sum_probs=206.7
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC--CCEEEEe
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD--GDILISG 79 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~--g~~l~s~ 79 (471)
.+++|+|+++++++|+.||+|++||+..+. ......+.+|.++|++++|+|+ +++|++|
T Consensus 13 ~~l~~s~dg~~latg~~dg~I~vwd~~~~~-------------------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 13 HDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp EEECCCSSSCCEEEEETTTEEEEEEEETTE-------------------EEEEEEECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred EEEEECCCCCeEEEEECCCcEEEEecCCCC-------------------CccceeccCCcCceEEEEecCCCCCCEEEEE
Confidence 457899999999999999999999998322 1233688899999999999998 9999999
Q ss_pred cCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCC--CeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 80 SDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
+.||.|++||+.+++ ....+ .+|...|.+++|+| + ++.+++++.||.|++||+..+.......+.+|...|.+
T Consensus 74 s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp--~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp ETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred eCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECC--CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 999999999999886 44444 78999999999999 8 99999999999999999988866655667889999999
Q ss_pred EEEccC-------------CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC--CceEE
Q 012064 156 LAIEPG-------------SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFA 220 (471)
Q Consensus 156 ~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~ 220 (471)
++|+|. + ..+++++.||.|++||++++.......... .+ |...|.+++|+|++ +.+++
T Consensus 151 l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~----~~--h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTL----EG--HSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp EEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEE----CC--CSSCEEEEEECCCCSSSEEEE
T ss_pred EEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeee----cC--CCCcEEEEEeccCCCCCCEEE
Confidence 999994 5 578999999999999999875432221100 01 55689999999985 68999
Q ss_pred EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
+++.||.|++||+++.+.... ........+...|.+++|+|+|+++++++ ++.|++|++..+.
T Consensus 224 s~s~Dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 224 SVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSCEEEEEESSSSSCCB----------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEecCCEEEEecCCCCCCcce----------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999999988642111 11122344677899999999999999887 6789999998654
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3e-33 Score=261.83 Aligned_cols=267 Identities=15% Similarity=0.230 Sum_probs=208.5
Q ss_pred EEeccccccEEEEEEcCC-CCEEEEecCCCeEEEEECCC----------CceEEEeecCCCcceeEEEEecCCCCe-EEE
Q 012064 55 AKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT----------ERVKLSFHSGHNDNVFQAKIMPFTDDR-SIV 122 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~-g~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~ 122 (471)
....+|.+.|++++|+|+ +.+||+++.||.|++||+.+ .+.+..+ .+|...|.+++|+| ++. +|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNP--NLNGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECT--TSTTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCC--CCCCeEE
Confidence 345579999999999997 68999999999999999986 4555555 78999999999999 887 999
Q ss_pred EEeCCCeEEEEeccccCcc-----eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc---cceeeeeccc
Q 012064 123 TCAADGQVRHAQILERGGV-----ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPI 194 (471)
Q Consensus 123 s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~ 194 (471)
+++.||.|++|++..+... ....+..|...|.+++|+|++..+|++++.||.|++||++++. ....+..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~--- 275 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA--- 275 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC---
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec---
Confidence 9999999999999874321 1234668999999999999666899999999999999999873 3333332
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (471)
+...|++++|+|++..++++|+.||.|++||+++.. .+......|...|.+++|+|+++
T Consensus 276 -------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------------~~~~~~~~h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 276 -------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------------LKLHSFESHKDEIFQVQWSPHNE 334 (430)
T ss_dssp -------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------------SCSEEEECCSSCEEEEEECSSCT
T ss_pred -------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------------CCeEEeecCCCCEEEEEECCCCC
Confidence 556799999999966689999999999999998743 12344556788999999999995
Q ss_pred -eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeC
Q 012064 275 -LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (471)
Q Consensus 275 -~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 352 (471)
+|++++ ++.|++||+.......... .........+..+.+|... |.+++| +
T Consensus 335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~h~~~--v~~~~~-~ 387 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSKIGEEQSTE------------------------DAEDGPPELLFIHGGHTAK--ISDFSW-N 387 (430)
T ss_dssp TEEEEEETTSCCEEEEGGGTTCCCCHH------------------------HHHHCCTTEEEECCCCSSC--EEEEEE-C
T ss_pred CEEEEEeCCCcEEEEeCCCCccccCcc------------------------ccccCCcceEEEcCCCCCC--ceEEEE-C
Confidence 577776 7799999997632111000 0000001234455667765 999999 9
Q ss_pred CCCc-EEEEeeCCCeEEEEEccCC
Q 012064 353 PKCE-YVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 353 ~~g~-~l~~g~~dg~v~iwd~~~~ 375 (471)
|+++ +|++++.||.|+||++...
T Consensus 388 p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 388 PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCEEEEEECCCCEEEeEcccc
Confidence 9999 8999999999999998654
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=260.99 Aligned_cols=318 Identities=9% Similarity=0.007 Sum_probs=223.5
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCc---ccccccccee------------------cccccc-------------
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQ---LSTRNFALRR------------------RASEDL------------- 47 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~------------------~~~~~~------------- 47 (471)
..+.++++|++|+++ .++.|++||+++|+ .+........ ...++.
T Consensus 8 ~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 8 QNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp CEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 456789999976666 58899999999998 4432111100 000000
Q ss_pred --eeeeeeeEEeccccccEEEEEEcCCCCEE-EEecCCCeEEEEECC--CCceEEEee-cCCCcceeEEEEecCCCCeEE
Q 012064 48 --VLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWK--TERVKLSFH-SGHNDNVFQAKIMPFTDDRSI 121 (471)
Q Consensus 48 --~~~~~~~~~l~~h~~~V~~~~~s~~g~~l-~s~~~d~~i~iwd~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l 121 (471)
...........+|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. ..|...|.+++|+| ++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l 164 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTV 164 (450)
T ss_dssp -------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEE
T ss_pred cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEE
Confidence 00001112334677899999999999996 899999999999999 788766663 25778999999999 99999
Q ss_pred EEEeCCCeEEEEeccccCcce--eeEeeceeeeEEEEEEccC---CCcEEEEEecCCeEEEEeccCCccceeeeecccCC
Q 012064 122 VTCAADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIEPG---SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 122 ~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
++++.+|.+++|++.+.+... ...+.+|...|.+++|+|+ + .+|++++.|+.|++||+++++....+..
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~----- 238 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLF----- 238 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECC-----
T ss_pred EEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeec-----
Confidence 999999999999998776542 2236789999999999999 7 6899999999999999998877655321
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCC----------CcccCCCccceEE
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP----------PNLIGDEQVGITG 266 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~ 266 (471)
+ +...|.+++|+ + +.+|++++.|+.|++||+++++..............+. ..........+.+
T Consensus 239 --~--h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 239 --G--HKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp --C--CSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred --C--CCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 1 55689999999 6 78999999999999999998775433221100000000 0000123457899
Q ss_pred EEEcCCCCeEEEee--CCcEEEEec--CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce
Q 012064 267 LAFSDQSELLVSYN--DEFIYLFTQ--DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (471)
Q Consensus 267 ~~~~~~~~~l~~~~--~~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (471)
++|+|++++|++++ ++.|++|++ ..+.. ......+.++ ..
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~-----------------------------------l~~~~~~~~~-~~ 356 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGD-----------------------------------LALKQIITFP-YN 356 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTC-----------------------------------EEEEEEEECS-SC
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCc-----------------------------------eeeccEeccC-Cc
Confidence 99999999998886 568999999 33100 1344556666 33
Q ss_pred eEeeeeeeeCCCCcEEEEeeC------CCeEEEEEcc
Q 012064 343 VTVKGVNFFGPKCEYVVSGSD------CGRIFIWKKK 373 (471)
Q Consensus 343 ~~i~~~~~~s~~g~~l~~g~~------dg~v~iwd~~ 373 (471)
+.+++| +|++.++++++. +..|.+|.+.
T Consensus 357 --v~~~~~-~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 357 --VISLSA-HNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp --EEEEEE-ETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred --eEEEEe-cCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 899999 897655555553 4557888764
No 118
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.9e-33 Score=259.18 Aligned_cols=255 Identities=18% Similarity=0.220 Sum_probs=198.9
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|++++||+|+.||+|+|||+++++.+ +.+.+|...+.+++++ +.+|++|+.
T Consensus 151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~---------------------~~~~~h~~~v~~~s~~--~~~l~sgs~ 207 (420)
T 4gga_A 151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---------------------RNMTSHSARVGSLSWN--SYILSSGSR 207 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEE---------------------EEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCCeEEEEEcCCCcEE---------------------EEEeCCCCceEEEeeC--CCEEEEEeC
Confidence 45789999999999999999999999988876 6889999999998875 679999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc--eeeEeeceeeeEEEEEEc
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~ 159 (471)
|+.+++||..........+.+|...+..+.|+| +++++++++.|+.+++|+...++.. .......|...|.+++|+
T Consensus 208 d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 285 (420)
T 4gga_A 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285 (420)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred CCceeEeeecccceeeEEecccccceeeeeecC--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence 999999999876655555589999999999999 9999999999999999999876542 223466788999999999
Q ss_pred cCCCcEEEEE--ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe--CCCeEEEEEcCC
Q 012064 160 PGSPHVFYTC--GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRK 235 (471)
Q Consensus 160 ~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~ 235 (471)
|.+..+++++ +.|+.|++||+++++....+. ....+.++.|+|++ ..+++++ .|+.|++||+++
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-----------~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----------CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTT
T ss_pred CCcccEEEEEeecCCCEEEEEeCCccccceeec-----------cccceeeeeecCCC-CeEEEEEecCCCEEEEEECCC
Confidence 9988877764 579999999999998776665 33357788888874 4554433 678888888765
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (471)
++
T Consensus 354 ~~------------------------------------------------------------------------------ 355 (420)
T 4gga_A 354 MA------------------------------------------------------------------------------ 355 (420)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 42
Q ss_pred CCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEE
Q 012064 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC 390 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 390 (471)
.+..+.+|... |.+++| +|||++|++|+.|++|+|||+....+......+...+..
T Consensus 356 ----------------~v~~l~gH~~~--V~~l~~-spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 356 ----------------KVAELKGHTSR--VLSLTM-SPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp ----------------EEEEECCCSSC--EEEEEE-CTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred ----------------EEEEEcCCCCC--EEEEEE-cCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 22345567665 889998 999999999999999999998776665555555444333
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-33 Score=250.89 Aligned_cols=272 Identities=10% Similarity=0.044 Sum_probs=204.0
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCe
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~ 84 (471)
+..+++.++++|+.||+|++||+++++.+. .+. ...|.++.|+|+ +++++.|++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~---------------------~~~--~~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT---------------------TIT--TPNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE---------------------EEE--EECCCTTCCCCS---EEEECSTTE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE---------------------EEe--cCCceeeeeCCc---eEEecCCCe
Confidence 345678899999999999999999888762 333 567888889988 999999999
Q ss_pred EEEEECC---------CCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 85 VILWDWK---------TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 85 i~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
|++|+.. +++.+..+..+|.+.|.+++|+|..+++++++++.||+|++||+.+++.... ....+...+.+
T Consensus 97 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~~i~~ 175 (343)
T 3lrv_A 97 LLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV-HSAKSDVEYSS 175 (343)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE-ECCCSSCCCCE
T ss_pred EEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-EecCCCCceEE
Confidence 9999655 5555566656788899999999855688999999999999999988776432 12345667999
Q ss_pred EEEccCCCcEEEEEecCCeEEEEeccCCccc-eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
++|+|++ .++++|+.||.|++||+++++.. ..+... |...|.+++|+|+ +.+|++++ ++.|++||++
T Consensus 176 ~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~---------h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~ 243 (343)
T 3lrv_A 176 GVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVD---------EEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLR 243 (343)
T ss_dssp EEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCC---------TTSCEEEEEECTT-SSEEEEEE-SSBEEEEETT
T ss_pred EEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEecc---------CCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcC
Confidence 9999999 58899999999999999998866 444320 4458999999998 78999998 5599999999
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccce--EEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGI--TGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
+.+...... ....+...+ .+++|+|+|++|++++ ++.+++|++.....
T Consensus 244 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~---------------- 295 (343)
T 3lrv_A 244 KDVGTLAYP------------TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK---------------- 295 (343)
T ss_dssp SSTTCBSSC------------CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC----------------
T ss_pred CCCcceeec------------ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc----------------
Confidence 875322110 001122222 4799999999999966 56899999865311
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC---CCcEEEEeeCCCeEEEEEc
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP---KCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~---~g~~l~~g~~dg~v~iwd~ 372 (471)
.... ..+..+.| ++ +++.+++++.||.++++-.
T Consensus 296 ----------------------~~~~------~~~~~~~~-~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 296 ----------------------NWTK------DEESALCL-QSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ----------------------SEEE------EEEEECCC-----CCCCEEEEEEETTEEEEEEE
T ss_pred ----------------------ceEe------cCceeEec-CccccccceeEEEecCCceEEEEe
Confidence 0111 23667777 77 8899999999999988764
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.8e-32 Score=254.52 Aligned_cols=280 Identities=15% Similarity=0.155 Sum_probs=220.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
+++++|++.++++++.|+.|++||.++++... ......+.+|.+.|.+++|+|+++++++++.|
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR----------------LSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEE----------------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEee----------------ecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 46788888889999999999999999887662 11111456899999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
+.|++||+.+++.+..+ ..|...+.+++|+| ++++++ +++.|+.|++||+.+++.... +. +...+.+++|+|+
T Consensus 191 ~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~ 264 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATV-DLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRK--TD-KIGLPRGLLLSKD 264 (433)
T ss_dssp TEEEEEETTTCCEEEEE-ECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEE--CC-CCSEEEEEEECTT
T ss_pred CEEEEEECCCceEEEEE-cCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEE--ec-CCCCceEEEEcCC
Confidence 99999999999888777 57889999999999 998885 455799999999987765443 33 3455899999999
Q ss_pred CCcEEEEEe--------cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 012064 162 SPHVFYTCG--------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (471)
Q Consensus 162 ~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (471)
++ .+++++ .|+.|++||+++++....+. +...+.+++|+|++..++++++.++.|++||+
T Consensus 265 g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 265 GK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-----------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp SS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-----------EEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CC-EEEEEECCCCccccCCCeEEEEECCCCcEEeecc-----------CCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 95 566666 48899999999887665553 44578899999995557778899999999999
Q ss_pred CCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC----------------CcEEEEecCCCCCCCC
Q 012064 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----------------EFIYLFTQDMGLGPNP 297 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------~~i~i~d~~~~~~~~~ 297 (471)
++++.... . .+...+.+++|+|+|+++++++. +.|++||..++
T Consensus 333 ~~~~~~~~---------------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----- 391 (433)
T 3bws_A 333 KEKKVQKS---------------I-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD----- 391 (433)
T ss_dssp TTTEEEEE---------------E-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-----
T ss_pred CCCcEEEE---------------e-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-----
Confidence 87653221 1 13456889999999998887763 38999998764
Q ss_pred CCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEccC
Q 012064 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG 374 (471)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~~ 374 (471)
.....+..+.. +.+++| +|+|++|++++. |+.|++|++..
T Consensus 392 ---------------------------------~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 ---------------------------------TVKEFWEAGNQ---PTGLDV-SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ---------------------------------EEEEEEECSSS---EEEEEE-CTTSCEEEEEETTTTEEEEEEETT
T ss_pred ---------------------------------cEEEEecCCCC---CceEEE-cCCCCEEEEEECCCCeEEEEEecC
Confidence 23344444332 788998 999999998775 99999999853
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.2e-31 Score=248.27 Aligned_cols=269 Identities=12% Similarity=0.136 Sum_probs=212.2
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEE-EEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
.++++++.|+.|++||+.+++.+..+ ..| ..+.+++|+| +++++ ++++.|+.|++||+.+++.... +..+ ..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~-~~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIAT--VPAG-SS 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEE--EECS-SS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEE--EECC-CC
Confidence 46888999999999999999987776 455 4589999999 99877 6777899999999988766543 4433 38
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
+.+++|+|+++.++++++.++.|++||+++++....+. ....+.+++|+|++..++++++.++.|++||
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------TGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------CSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 99999999997666677778999999999998776665 2235789999999543447888899999999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE-Eee-CCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV-SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
+++++.... ... ...+..++|+|++++++ ++. ++.|++||+.++
T Consensus 145 ~~~~~~~~~---------------~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------ 190 (391)
T 1l0q_A 145 TVTKAVINT---------------VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------ 190 (391)
T ss_dssp TTTTEEEEE---------------EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------
T ss_pred CCCCcEEEE---------------Eec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------
Confidence 988763321 111 24468999999999874 444 568999999764
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee---CCCeEEEEEccCCeeeEEecCCCcc
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGELIRVIEADRHV 387 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~---~dg~v~iwd~~~~~~~~~~~~h~~~ 387 (471)
.....+..+ . .+.+++| +|+|++|++++ .++.|++||+.+++.+..+..|. .
T Consensus 191 --------------------~~~~~~~~~-~--~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~ 245 (391)
T 1l0q_A 191 --------------------SVIDTVKVE-A--APSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-D 245 (391)
T ss_dssp --------------------EEEEEEECS-S--EEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-S
T ss_pred --------------------eEEEEEecC-C--CccceEE-CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-C
Confidence 222333322 2 2788898 99999999887 68999999999999988888765 4
Q ss_pred eEEEEEcCCCCEE-EEeecCCcEEEecCCCCCC
Q 012064 388 VNCIEPHPHSTVL-ASSGIESDIKILTPNAADR 419 (471)
Q Consensus 388 v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~ 419 (471)
+.+++|+|++++| ++++.|+.|++||+.+++.
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 7899999999977 6778899999999998765
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1.2e-31 Score=256.24 Aligned_cols=339 Identities=12% Similarity=0.054 Sum_probs=251.3
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCe
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~ 84 (471)
.++|++.++++++.|++|.+||..+++++ .++..+.. +..++|+|||++|++++.|++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~---------------------~~i~~g~~-~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV---------------------KVIDTGYA-VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE---------------------EEEECSTT-EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE---------------------EEEecCcc-cceEEECCCCCEEEEECCCCe
Confidence 36788999999999999999999988877 45663333 889999999999999999999
Q ss_pred EEEEEC--CCCceEEEeecCCCcceeEEEEecC--CCCeEEEEEe-CCCeEEEEeccccCcceeeEeec--------eee
Q 012064 85 VILWDW--KTERVKLSFHSGHNDNVFQAKIMPF--TDDRSIVTCA-ADGQVRHAQILERGGVETKLLGK--------HQG 151 (471)
Q Consensus 85 i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~--------~~~ 151 (471)
|.+||+ .+++.+.++. +......++|+|. .|++++++++ .+++|.+||..+.+.+......+ |..
T Consensus 202 V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 202 IDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp EEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred EEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccC
Confidence 999999 8888877773 4556799999862 1678888877 48999999998887765532211 223
Q ss_pred -eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 152 -RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 152 -~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
.+.++.++|+++.++++...++.|.+||+.+.+........ ....+..++|+|++..+++++..+++|.+
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---------~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---------AAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---------CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---------cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 68899999998888888889999999999887655422111 22346789999994334445567899999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC-CCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccc
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~ 307 (471)
||..++++......+ ...|......+ ++|+ +.+++++. +++|.+||..+......
T Consensus 351 ~D~~tg~l~~~i~~g-----------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~---------- 408 (543)
T 1nir_A 351 IDSKDRRLSALVDVG-----------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---------- 408 (543)
T ss_dssp EETTTTEEEEEEECS-----------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT----------
T ss_pred EECCCCeEEEeeccC-----------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh----------
Confidence 999998754332110 01122222233 4677 66677764 57999999976321110
Q ss_pred cccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-------CCCeEEEEEccCCeee-E
Q 012064 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------DCGRIFIWKKKGGELI-R 379 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-------~dg~v~iwd~~~~~~~-~ 379 (471)
..+.++.+.+|... +..+.+ +|+|++|++++ .+++|.+||+.+++.. .
T Consensus 409 ---------------------~~~~v~~l~~~g~~--~~~v~~-~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 409 ---------------------AWKKVAELQGQGGG--SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp ---------------------BTSEEEEEECSCSC--CCCEEC-CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred ---------------------cCeEEEEEEcCCCC--ceEEEc-CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 03456777777655 677888 99999999987 2679999999998876 4
Q ss_pred Ee--------cCCCcceEEEEEcCCCCEEEEee-----cCCcEEEecCCCCCCccc
Q 012064 380 VI--------EADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRATL 422 (471)
Q Consensus 380 ~~--------~~h~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~ 422 (471)
.+ ..+...+..++|+|+|+.++.+. .|+.|.|||..++++...
T Consensus 465 ~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 465 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp EECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred EeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 43 35677899999999999877652 479999999999877443
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.2e-33 Score=259.25 Aligned_cols=253 Identities=9% Similarity=0.058 Sum_probs=182.2
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC--------CCCE
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--------DGDI 75 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--------~g~~ 75 (471)
..+++++.+||+|+.|++|+|||.++++.. .......+.||.+.|++++|+| |+++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETII----------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEE----------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccc----------------eeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 356777889999999999999999987755 3334456889999999999998 8899
Q ss_pred EEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccCccee-----------
Q 012064 76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVET----------- 143 (471)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----------- 143 (471)
||+|+.|++|+|||+.++.++..+ .+|...+.+++|+| ++ .+|++++.||+|++||+.+++....
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p--~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRP--SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEET--TEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred EEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECC--CCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 999999999999999888877766 57889999999999 77 4799999999999999987654321
Q ss_pred ------------eEeeceeeeEEEEEEc-cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC--------cCccee
Q 012064 144 ------------KLLGKHQGRAHKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--------RRNYMT 202 (471)
Q Consensus 144 ------------~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~ 202 (471)
....+|...+.++.|+ |++ ..+++++.|+.+++||+..++....+....... ......
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred EEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 0123567788889987 677 578999999999999998876654443211100 000001
Q ss_pred eeeeEEEEEcC-CCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC
Q 012064 203 VVNLNAIAIDP-RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (471)
Q Consensus 203 ~~~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (471)
........++| .++.++++|+.||.|++||..+++.. .....|..+|.+++|+|||++||++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~---------------~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN---------------SIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC---------------EEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE---------------EEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 11122234444 33456778889999999999876521 223345678999999999999999999
Q ss_pred CcEEEEecCC
Q 012064 282 EFIYLFTQDM 291 (471)
Q Consensus 282 ~~i~i~d~~~ 291 (471)
+.+.+|.+..
T Consensus 380 ~Gv~lvrL~g 389 (393)
T 4gq1_A 380 GSVLLTRLMG 389 (393)
T ss_dssp SEEEEEEEGG
T ss_pred CCeEEEEEeC
Confidence 9998888753
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=7e-32 Score=233.84 Aligned_cols=278 Identities=14% Similarity=0.052 Sum_probs=172.3
Q ss_pred EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE-ecCC-CeEEEEE
Q 012064 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSDD-RRVILWD 89 (471)
Q Consensus 12 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s-~~~d-~~i~iwd 89 (471)
.+++++ ..+|++|+..++. .++..+++++|+.+|..+.+.||-.-|+. +-.+ ..-.++-
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s 116 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAW------------------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRA 116 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSS------------------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEE
T ss_pred EEEEec-cceEEEcccCCCc------------------cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEE
Confidence 466776 6689999999772 23444777788877777777775422211 1100 0001111
Q ss_pred C--CC-----CceEEEeecCCCcceeEEEEecCCCCeEEEEEe--CCCeEEEEeccc-cCcceeeEeeceeeeEEEEEEc
Q 012064 90 W--KT-----ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 90 ~--~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 159 (471)
+ .. ++.+.. .+|...|..+ + +++.+.+++ .|+.|++|++.. ++.+.. +..|...+..++|+
T Consensus 117 la~spd~~~~~~~l~s--~g~~~~v~~l---~--~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s--~~~~~~~v~~l~fs 187 (356)
T 2w18_A 117 LFCSSDDESEKQVLLK--SGNIKAVLGL---T--KRRLVSSSGTLSDQQVEVMTFAEDGGGKEN--QFLMPPEETILTFA 187 (356)
T ss_dssp ECC------CCEEEEE--EEEEEEEEEE---T--TTEEEEEESSSTTCEEEEEEECTTSCEEEE--EEECCCSSCEEEEE
T ss_pred EEECCCccccccEEEe--CCCeEEEEec---C--CCcEEEecccCCCCcEEEEEECCCCceeee--eccCCCceeeEEee
Confidence 1 00 111111 2343344433 4 666666643 478888888844 333333 56788888888888
Q ss_pred c---CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 160 P---GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 160 ~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
| ++ .+|++++.|++|++||+++++.+..+.... .+...+.+++|+|+ +.++++++.+.. +|+
T Consensus 188 ~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-------~~v~~v~~vafSpd-G~~lvs~s~~~~--~w~---- 252 (356)
T 2w18_A 188 EVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDD-------SYQASVCHKAYSEM-GLLFIVLSHPCA--KES---- 252 (356)
T ss_dssp EEETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC----------CCCEEEEEEET-TEEEEEEC-------------
T ss_pred ccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCC-------cceeeeEEEEECCC-CCEEEEeccCCC--cce----
Confidence 8 55 689999999999999999999888876321 12346788899998 677755543211 122
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (471)
+++++ ++++++||..+++.
T Consensus 253 ---------------------------------------laSGs~D~tIklWd~~tgk~--------------------- 272 (356)
T 2w18_A 253 ---------------------------------------ESLRSPVFQLIVINPKTTLS--------------------- 272 (356)
T ss_dssp --------------------------------------------CCEEEEEEETTTTEE---------------------
T ss_pred ---------------------------------------eeccCCCcEEEEEECCCCEE---------------------
Confidence 22333 23455555544311
Q ss_pred CCCccCCCCCCcccccCCeee-----ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceE-
Q 012064 316 HTSAASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN- 389 (471)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~- 389 (471)
+..+ .+|... +.+..+ ++.++++|+.|++|+|||+.+++++.++.+|...+.
T Consensus 273 -----------------l~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 273 -----------------VGVMLYCLPPGQAGR--FLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS 330 (356)
T ss_dssp -----------------EEEEEECCCTTCCCC--EEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred -----------------EEEEEeeccCCCcce--eEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence 0110 133322 223333 378999999999999999999999999999987655
Q ss_pred EEEEcCCCCEEEEeecCCcEEEecC
Q 012064 390 CIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 390 ~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
.++|+|||++|++|+.|++|+|||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 6899999999999999999999985
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.8e-31 Score=242.90 Aligned_cols=291 Identities=9% Similarity=0.034 Sum_probs=201.6
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEE-EEe
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISG 79 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l-~s~ 79 (471)
+.+++|+|++++|++|+.|| ++||+.++++.. .. .+...+..+++.++++.+ +++
T Consensus 22 V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------------------~~--~~~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------------------MS--QEMRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp CCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---------------------EE--EECSCCCEEEECTTSSEEEEEC
T ss_pred eEEEEECCCCCEEEEEcCCE-EEEEecCCccee---------------------ee--eecCCeEEEEEcCCCCEEEEEE
Confidence 35678999999999998775 789998865544 12 122357888999988877 567
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc-CcceeeEeeceeeeEEEEEE
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGRAHKLAI 158 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~ 158 (471)
+.|++|++||..+++.+..+ .|...|.+++|++ + .++++ .++.|++||+.+. +.+.. +.. +...+++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~--~~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~--~~~---~~~~~~~ 145 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRI--KVDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITD--DIR---FGGVCEF 145 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEE--ECSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSC--CEE---EEEEEEE
T ss_pred CCccEEEEEECCCCcEEEEE--ECCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEE--ecc---CCceEEE
Confidence 78899999999999988877 3677999999987 4 34444 3789999999887 54443 322 3444566
Q ss_pred ccCCCcEEEE-EecCCeEEEEeccCCcc----------------ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 159 EPGSPHVFYT-CGEDGLVQHFDLRTGAA----------------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 159 ~~~~~~~l~~-~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
++ . .++++ ++.||.|++||++++.. ...+. + |...|.+++|+|+ +.+|++
T Consensus 146 s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~--h~~~v~~~~~s~~-g~~l~s 212 (355)
T 3vu4_A 146 SN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--------A--HTNPIKMVRLNRK-SDMVAT 212 (355)
T ss_dssp ET-T-EEEEEESSCTTCEEEEECCC------------------CCEEEC--------C--CSSCEEEEEECTT-SSEEEE
T ss_pred Ec-c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--------c--cCCceEEEEECCC-CCEEEE
Confidence 66 3 44444 68999999999998651 22222 1 6678999999998 789999
Q ss_pred EeCCCe-EEEEEcCCCccCCCCCCCCCCCcCCCCcccCC-CccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCC
Q 012064 222 AGSDEY-TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (471)
Q Consensus 222 ~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~ 298 (471)
|+.|++ |++||+++++.. ..+..+ |...|.+++|+|++++|++++ ++.|++||+.........
T Consensus 213 ~s~d~~~v~iwd~~~~~~~--------------~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~ 278 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLV--------------REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH 278 (355)
T ss_dssp EETTCSEEEEEETTTCCEE--------------EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE
T ss_pred EeCCCCEEEEEECCCCcEE--------------EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc
Confidence 999998 999999987632 222323 788999999999999999998 568999999875321110
Q ss_pred CCCCccccccccccCCCCCCccCCCCCCcccccCCeeee---cCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK---GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
..... +.+. .... ......+. .... ....++| +++|++|++++.||.+++|++..+
T Consensus 279 ~~~~~--------~~~~----~~~~------~~~~~~~~~~~~~~~--~~~~~a~-~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 279 ALKGW--------INMK----YFQS------EWSLCNFKLSVDKHV--RGCKIAW-ISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ETTTT--------EECC----CCCC------SSCSEEEECCCCTTC--CCCEEEE-SSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccce--------eecc----cccc------ccceeEEEeccCCCC--CceEEEE-eCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00000 0000 0000 00011111 1111 1355788 999999999999999999998654
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=1.9e-30 Score=240.93 Aligned_cols=294 Identities=10% Similarity=0.049 Sum_probs=219.4
Q ss_pred CCCC-cEEEEec----CCC----eEEEEEc--ccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcC----
Q 012064 7 NNNN-KRARTSV----DKA----LVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT---- 71 (471)
Q Consensus 7 ~~~~-~~l~~~~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~---- 71 (471)
.+.+ ..+++|+ .|| +++|||+ .+++++. ...+.+|...+..+++++
T Consensus 71 ~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~d~~ 131 (415)
T 2hqs_A 71 SALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA-------------------QNSYKVNKQWLRYAGHTASDEV 131 (415)
T ss_dssp HTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE-------------------EEEEEECGGGHHHHHHHHHHHH
T ss_pred HhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe-------------------eeEEEcChhHHHHHHHHHHHHH
Confidence 3444 4566775 578 9999999 8887551 145778888887777764
Q ss_pred ----------CCCEEEEecCC------CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC---eEEE
Q 012064 72 ----------DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRH 132 (471)
Q Consensus 72 ----------~g~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~i 132 (471)
.+..++.++.+ +.|++||+..+. ...+ .+|...+.+++|+| |+++|++++.++ .|++
T Consensus 132 ~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l-~~~~~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 132 FEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp HHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE-EEESSCEEEEEECT--TSSEEEEEECTTSSCEEEE
T ss_pred HHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE-eCCCCcceeeEEcC--CCCEEEEEEecCCCcEEEE
Confidence 25666666554 799999997544 4555 57889999999999 999999999875 9999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCe--EEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
||+.+++.. .+..|...+.+++|+|+++.++++++.++. |++||+++++...... +...+.+++
T Consensus 208 ~d~~tg~~~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~ 273 (415)
T 2hqs_A 208 QTLANGAVR---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPT 273 (415)
T ss_dssp EETTTCCEE---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-----------CSSCEEEEE
T ss_pred EECCCCcEE---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-----------CCCcccceE
Confidence 999887653 266678889999999999655557776654 9999999876532211 334688999
Q ss_pred EcCCCCceEEEEeC-CC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC----Cc
Q 012064 211 IDPRNANLFAVAGS-DE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EF 283 (471)
Q Consensus 211 ~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~ 283 (471)
|+|+ +.+|++++. ++ .|++||+.+++. .....+...+..++|+|+|++|+.++. ..
T Consensus 274 ~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~ 336 (415)
T 2hqs_A 274 WFPD-SQNLAFTSDQAGRPQVYKVNINGGAP----------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH 336 (415)
T ss_dssp ECTT-SSEEEEEECTTSSCEEEEEETTSSCC----------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred ECCC-CCEEEEEECCCCCcEEEEEECCCCCE----------------EEEecCCCcccCeEECCCCCEEEEEECcCCceE
Confidence 9999 567776665 45 678888877542 112223457889999999999988763 27
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~ 363 (471)
|++||+.++. ...+..+. .+.+++| +|||++|++++.
T Consensus 337 i~~~d~~~~~---------------------------------------~~~l~~~~---~~~~~~~-spdg~~l~~~s~ 373 (415)
T 2hqs_A 337 IAKQDLATGG---------------------------------------VQVLSSTF---LDETPSL-APNGTMVIYSSS 373 (415)
T ss_dssp EEEEETTTCC---------------------------------------EEECCCSS---SCEEEEE-CTTSSEEEEEEE
T ss_pred EEEEECCCCC---------------------------------------EEEecCCC---CcCCeEE-cCCCCEEEEEEc
Confidence 9999998642 12233332 2778888 999999998887
Q ss_pred CC---eEEEEEccCCeeeEEecCCCcceEEEEEcCCCC
Q 012064 364 CG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398 (471)
Q Consensus 364 dg---~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~ 398 (471)
++ .|++||+. ++....+..|.+.|.+++|+|...
T Consensus 374 ~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 374 QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 76 89999986 666788999999999999999754
No 127
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=3.6e-30 Score=231.25 Aligned_cols=239 Identities=16% Similarity=0.174 Sum_probs=198.0
Q ss_pred CCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+++|+|+++++++|+.||+|++|++++++.+ +.+.+|...+.++.+ ++..+++++.
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~---------------------~~~~~h~~~~~~~~~--~~~~l~s~~~ 127 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---------------------RNMTSHSARVGSLSW--NSYILSSGSR 127 (318)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEE--ETTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCCcEEEeecCCceeE---------------------EEecCccceEEEeec--CCCEEEEEec
Confidence 35779999999999999999999999988877 678899998887655 5679999999
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce--eeEeeceeeeEEEEEEc
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIE 159 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~ 159 (471)
++.+++|+...+........+|...+..+.|.+ +++++++++.||.|++||+.+++... ......+...|.++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 205 (318)
T 4ggc_A 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205 (318)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred CCceEeeecCCCceeEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence 999999999887665555589999999999999 99999999999999999998765432 23355678899999999
Q ss_pred cCCCcEEE--EEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE--eCCCeEEEEEcCC
Q 012064 160 PGSPHVFY--TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--GSDEYTRLYDIRK 235 (471)
Q Consensus 160 ~~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i~d~~~ 235 (471)
|+++.++. +++.++.|++||.+......... +...+..+.|+|++ ..++++ +.|+.|++||+++
T Consensus 206 ~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp TTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-----------CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTT
T ss_pred CCCCcEEEEEecCCCCEEEEEeccccccccccc-----------ceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCC
Confidence 98876654 56678999999999887665544 44568999999985 455443 4799999999998
Q ss_pred CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCC
Q 012064 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (471)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~ 292 (471)
++.. ..+.+|...|++++|+|+|++|++++ |++|++||+...
T Consensus 274 ~~~~---------------~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 274 MAKV---------------AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CCEE---------------EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CcEE---------------EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7632 33556889999999999999999998 668999998653
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=1.7e-30 Score=241.23 Aligned_cols=300 Identities=14% Similarity=0.088 Sum_probs=223.6
Q ss_pred ccccEEEEEEcCCC-CEEEEec----CCC----eEEEEEC--CCCceEEE-eecCCCcceeEEEEecC------------
Q 012064 60 HRGCVNTVSFNTDG-DILISGS----DDR----RVILWDW--KTERVKLS-FHSGHNDNVFQAKIMPF------------ 115 (471)
Q Consensus 60 h~~~V~~~~~s~~g-~~l~s~~----~d~----~i~iwd~--~~~~~~~~-~~~~~~~~v~~~~~~~~------------ 115 (471)
+...+...+|++.| +++++|+ .+| ++++||+ .+++.+.. .+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34577888898888 4666776 467 8999999 88887633 23678888887777641
Q ss_pred CCCeEEEEEeCC------CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC---eEEEEeccCCccc
Q 012064 116 TDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAAT 186 (471)
Q Consensus 116 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~ 186 (471)
..+..++.++.+ +.|++||+.... . ..+..|...+.+++|+|+++ .+++++.++ .|++||+++++..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~--~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-Q--FVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCS-C--EEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCC-C--EEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcEE
Confidence 015667666654 799999996433 3 33777899999999999995 677777764 9999999998765
Q ss_pred eeeeecccCCcCcceeeeeeEEEEEcCCCCceEE-EEeCCCe--EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccc
Q 012064 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (471)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
.... +...+.+++|+|+ +..|+ +++.++. |++||+++++. .....+...
T Consensus 217 ~l~~-----------~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~ 268 (415)
T 2hqs_A 217 QVAS-----------FPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI----------------RQVTDGRSN 268 (415)
T ss_dssp EEEC-----------CSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE----------------EECCCCSSC
T ss_pred Eeec-----------CCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE----------------EeCcCCCCc
Confidence 3322 3346899999999 56555 6666554 99999987652 122345567
Q ss_pred eEEEEEcCCCCeEEEeeC--C--cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecC
Q 012064 264 ITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (471)
Q Consensus 264 i~~~~~~~~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (471)
+.+++|+|||++|+.+++ + .|++||+.++. ...+..+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---------------------------------------~~~l~~~ 309 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---------------------------------------PQRITWE 309 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------------------------------CEECCCS
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------------------------------------EEEEecC
Confidence 899999999998887773 3 58888887642 1222333
Q ss_pred CceeEeeeeeeeCCCCcEEEEeeCC---CeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCC---cEEEec
Q 012064 340 RNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILT 413 (471)
Q Consensus 340 ~~~~~i~~~~~~s~~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~ 413 (471)
... +.+++| +|||++|++++.+ ..|++||+.+++. ..+..|. .+.+++|+|||++|++++.++ .|++|+
T Consensus 310 ~~~--~~~~~~-spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 310 GSQ--NQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SSE--EEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CCc--ccCeEE-CCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 333 778888 9999999988764 5899999988876 4565564 899999999999999988877 799999
Q ss_pred CCCCCCcccCcchheeehhhHH
Q 012064 414 PNAADRATLPTNIEQAMMMTMT 435 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
+.++....++.+...+..++|.
T Consensus 385 ~~g~~~~~l~~~~~~v~~~~~~ 406 (415)
T 2hqs_A 385 TDGRFKARLPATDGQVKFPAWS 406 (415)
T ss_dssp TTSCCEEECCCSSSEEEEEEEC
T ss_pred CCCCcEEEeeCCCCCCcCCccc
Confidence 9988888888888887776654
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.4e-28 Score=235.09 Aligned_cols=289 Identities=11% Similarity=0.105 Sum_probs=218.5
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEec--cccCcceeeE
Q 012064 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI--LERGGVETKL 145 (471)
Q Consensus 68 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 145 (471)
+++|++.++++++.|++|.+||..+++.+..+..++. +..++|+| |+++|++++.|+.|++||+ .+.+.+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~-- 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAE-- 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEE--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEE--
Confidence 4889999999999999999999999999888844554 88999999 9999999999999999999 56554433
Q ss_pred eeceeeeEEEEEEcc----CCCcEEEEEe-cCCeEEEEeccCCccceeeeecccCCc-CcceeeeeeEEEEEcCCCCceE
Q 012064 146 LGKHQGRAHKLAIEP----GSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 146 ~~~~~~~v~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l 219 (471)
+. +...+..++|+| +++ .+++++ .++.|.+||..+++.+..+........ ..+.....+..+.++|+++.++
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 44 445679999999 995 455555 589999999999988877764221000 0000123688999999877888
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNP 297 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~ 297 (471)
++...++.|.+||..+.+.... ... .+...+..+.|+|+|+++++++ +++|.+||..+++
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~-------------~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~---- 357 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTV-------------TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR---- 357 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEE-------------EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE----
T ss_pred EEECCCCeEEEEEecCCCccee-------------EEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe----
Confidence 8888999999999987542110 011 1234467889999999876554 6689999998752
Q ss_pred CCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec----CCceeEeeeeeeeCCC-CcEEEEee-CCCeEEEEE
Q 012064 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG----HRNCVTVKGVNFFGPK-CEYVVSGS-DCGRIFIWK 371 (471)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~s~~-g~~l~~g~-~dg~v~iwd 371 (471)
....+.. |... ...|++|+ |.+++++. .|++|.+||
T Consensus 358 ----------------------------------l~~~i~~g~~ph~g~----g~~~~~p~~g~~~~s~~~~d~~V~v~d 399 (543)
T 1nir_A 358 ----------------------------------LSALVDVGKTPHPGR----GANFVHPKYGPVWSTSHLGDGSISLIG 399 (543)
T ss_dssp ----------------------------------EEEEEECSSSBCCTT----CEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ----------------------------------EEEeeccCCCCCCCC----CcccCCCCCccEEEeccCCCceEEEEE
Confidence 2233332 3221 12223676 66677765 589999999
Q ss_pred ccC-------CeeeEEecCCCcceEEEEEcCCCCEEEEee-------cCCcEEEecCCCCCCc
Q 012064 372 KKG-------GELIRVIEADRHVVNCIEPHPHSTVLASSG-------IESDIKILTPNAADRA 420 (471)
Q Consensus 372 ~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~dg~i~iw~~~~~~~~ 420 (471)
+.+ ++.++++.+|.+.+..++++|++++|++++ .+++|.+||+.+.+..
T Consensus 400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 988 899999999998899999999999999987 3789999999988764
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=4.2e-29 Score=250.60 Aligned_cols=340 Identities=10% Similarity=0.006 Sum_probs=224.0
Q ss_pred CCCCCCCCcEEEEecC-CC-----eEEEEEcccCccccccccceec-cccccee---eeeeeEEeccccccEEEEEEcCC
Q 012064 3 DASNNNNNKRARTSVD-KA-----LVDVWLRELGQLSTRNFALRRR-ASEDLVL---RLGIYAKLDKHRGCVNTVSFNTD 72 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~l~~h~~~V~~~~~s~~ 72 (471)
+++++|+|++|++++. || .|++||+++++........... .+..... .......+. ....|.+++||||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~SpD 119 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVDYQWSPD 119 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEECTT
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcceeEECCC
Confidence 4679999999999998 88 9999999988765211000000 0000000 000000000 0134889999999
Q ss_pred CCEEEEecCCCeEEEEECCCCc--eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee
Q 012064 73 GDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
|++|++++. +.|++||+.++. ....+ ..|...+.+++|+| ||++|++++ ++.|++||+.+++.... ...+.
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~~--~~~~~ 192 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQL--TADGS 192 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEEC--CCCCC
T ss_pred CCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEEe--ccCCc
Confidence 999999887 899999999872 23344 56788899999999 999999987 46999999987654332 22222
Q ss_pred ee----------------EEEEEEccCCCcEEEEEecCC---------------------------------eEEEEecc
Q 012064 151 GR----------------AHKLAIEPGSPHVFYTCGEDG---------------------------------LVQHFDLR 181 (471)
Q Consensus 151 ~~----------------v~~~~~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~ 181 (471)
.. +.+++|+||++ .|++++.|+ .|++||+.
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred cceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 21 47799999995 456666554 78999998
Q ss_pred C-CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC-----CCeEEEEEcCCCccCCCCCCCCCCCcCCCCc
Q 012064 182 T-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (471)
Q Consensus 182 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (471)
+ ++....... ..+...+..++| || +++|+++.. +..|++||+.+++...
T Consensus 272 ~~~~~~~~~~~--------~~~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~--------------- 326 (741)
T 2ecf_A 272 EQAQTQWIDLG--------KEQDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRV--------------- 326 (741)
T ss_dssp TTCCCEEECCC--------SCSSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEE---------------
T ss_pred CCCceEEecCC--------CCcceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEE---------------
Confidence 8 765432211 014457899999 99 567765543 5679999998765321
Q ss_pred ccCCCc-c---ceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccc
Q 012064 256 LIGDEQ-V---GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (471)
Q Consensus 256 ~~~~~~-~---~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (471)
....+. . .+..++|+|||+++++++ ++.+.+|.++.. .
T Consensus 327 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-------------------------------------~ 369 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-------------------------------------G 369 (741)
T ss_dssp EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-------------------------------------S
T ss_pred EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-------------------------------------C
Confidence 111111 1 345789999999887776 455666665421 1
Q ss_pred cCCeeeecCCceeEeeee-eeeCCCCcEEE-EeeCCC--eEEEEEccC-CeeeEEecCCCcceEEEEEcCCCCEEEEeec
Q 012064 331 IAPQVYKGHRNCVTVKGV-NFFGPKCEYVV-SGSDCG--RIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (471)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~-~~~s~~g~~l~-~g~~dg--~v~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 405 (471)
. ...+..+... +..+ .| +|+|+.|+ +++.++ .++||++.. ++....+.. ...+..++|+|||++|+....
T Consensus 370 ~-~~~l~~~~~~--v~~~~~~-s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 370 K-AAALTHGNWS--VDELLAV-DEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp C-EEESCCSSSC--EEEEEEE-ETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred C-eeeeeecceE--EEeEeEE-eCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEec
Confidence 1 2334444433 6666 46 99998775 455555 899999864 555666765 567889999999998876644
Q ss_pred C----CcEEEecCCCCC
Q 012064 406 E----SDIKILTPNAAD 418 (471)
Q Consensus 406 d----g~i~iw~~~~~~ 418 (471)
+ ..+.+|+...+.
T Consensus 445 ~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 445 NNSTPPQIELFRANGEK 461 (741)
T ss_dssp ETTEEEEEEEEETTSCE
T ss_pred CCCCCCeEEEEEcCCCe
Confidence 3 568899886544
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=3.5e-28 Score=251.84 Aligned_cols=337 Identities=10% Similarity=0.057 Sum_probs=241.7
Q ss_pred CCCCCCCCcEEEEecCC------CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccE-------EEEEE
Q 012064 3 DASNNNNNKRARTSVDK------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCV-------NTVSF 69 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V-------~~~~~ 69 (471)
.++|||||++||.++.+ ..|++|+..+++. +.+..|...+ ..++|
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~----------------------~~lt~~~~~~~~~~~~~~~~~~ 114 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI----------------------KRITYFSGKSTGRRMFTDVAGF 114 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE----------------------EECCCCCEEEETTEECSEEEEE
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe----------------------EEcccCCCcccccccccccccC
Confidence 46799999999987643 4899999987663 4677888888 99999
Q ss_pred cCCCCEEEEecCC------CeEEEEECCCCceEE----------------------------------------------
Q 012064 70 NTDGDILISGSDD------RRVILWDWKTERVKL---------------------------------------------- 97 (471)
Q Consensus 70 s~~g~~l~s~~~d------~~i~iwd~~~~~~~~---------------------------------------------- 97 (471)
||||+++++++.+ ..|.+|++.+++...
T Consensus 115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~ 194 (1045)
T 1k32_A 115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG 194 (1045)
T ss_dssp CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence 9999977777754 468888876554321
Q ss_pred ---EeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCe
Q 012064 98 ---SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (471)
Q Consensus 98 ---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 174 (471)
.+ .+|...+.++.|++ + ..+++++.++.+++|.+....... ..+..|. .+...+|+|++. .++.+ .++.
T Consensus 195 ~~~~l-~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~~~-~~~~~~~SpDG~-~la~~-~~~~ 266 (1045)
T 1k32_A 195 AFKKI-VDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDL-RKHTSFT-DYYPRHLNTDGR-RILFS-KGGS 266 (1045)
T ss_dssp EEEEE-ECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSC-EECCCCC-SSCEEEEEESSS-CEEEE-ETTE
T ss_pred CeEEC-cCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcc-eEecCCC-CcceeeEcCCCC-EEEEE-eCCE
Confidence 11 35677788899988 6 777788888999999876432221 2244444 356679999995 44554 5899
Q ss_pred EEEEeccCCccceeeeecccCCc-CcceeeeeeEEEEEc-CCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCC
Q 012064 175 VQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLNAIAID-PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (471)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (471)
|++||+...... .+........ ....+...+.+++|+ |+ +.++++++ ++.+++|+...++..
T Consensus 267 i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~------------- 330 (1045)
T 1k32_A 267 IYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVL------------- 330 (1045)
T ss_dssp EEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEE-------------
T ss_pred EEEecCCceEee-eeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceE-------------
Confidence 999999443322 2221100000 000123358899999 99 67777776 789999998765421
Q ss_pred CCcccCCCcc-ceEEEEEcCCCCeEEEeeCC-cEE-EEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccc
Q 012064 253 PPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY-LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (471)
Q Consensus 253 ~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~-~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (471)
....+.. .+..++|+ +|+.|+.++++ .+. +|+...+.
T Consensus 331 ---~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------------------------------------ 370 (1045)
T 1k32_A 331 ---KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------------------------------------ 370 (1045)
T ss_dssp ---ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------------------------------------
T ss_pred ---EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------------------------------------
Confidence 1223344 78999999 99998888754 677 88876531
Q ss_pred ccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCC--
Q 012064 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES-- 407 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-- 407 (471)
...+.++... +..++| +|||++|++++.++.|++||+.+++....+.+|.+.+..++|+|||++|++++.++
T Consensus 371 ---~~~l~~~~~~--~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 371 ---AEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp ---EEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred ---ceEecCCccc--eeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence 1222244433 788998 99999999999999999999999988888878999999999999999998887654
Q ss_pred --------cEEEecCCCCCCcccCcchheeeh
Q 012064 408 --------DIKILTPNAADRATLPTNIEQAMM 431 (471)
Q Consensus 408 --------~i~iw~~~~~~~~~~~~~~~~~~~ 431 (471)
.|++||+.+++...+..+......
T Consensus 445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 476 (1045)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred cccCCCCCeEEEEECCCCcEEEeeCCCcccCC
Confidence 899999998876666665544443
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=8.3e-28 Score=208.46 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=148.9
Q ss_pred CCCCCCC----CcEEEEecCCCeEEEEEcccCccccccccceecccccceeee------eeeEEeccccccEEEEEEcC-
Q 012064 3 DASNNNN----NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNT- 71 (471)
Q Consensus 3 ~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~h~~~V~~~~~s~- 71 (471)
.++++|+ ++.+++++.+ +++|++.+|+++.... .+.+..+.-+ +....+.+|...++.++|+|
T Consensus 116 sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~----~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG----TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp EECC------CCEEEEEEEEE--EEEEEETTTEEEEEES----SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred EEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecc----cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 5678899 8888887743 6777777666653211 0011111111 23456778999999999999
Q ss_pred --CCCEEEEecCCCeEEEEECCCCceEEEeecCC--CcceeEEEEecCCCCeEE------------EEEeCCCeEEEEec
Q 012064 72 --DGDILISGSDDRRVILWDWKTERVKLSFHSGH--NDNVFQAKIMPFTDDRSI------------VTCAADGQVRHAQI 135 (471)
Q Consensus 72 --~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l------------~s~~~dg~i~iwd~ 135 (471)
++.+||+|+.|++|+|||+.+|+++..+..+| ...+.+++|+| ++.++ ++|+.|++|++||.
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp--dG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE--MGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE--TTEEEEEEC------------CCEEEEEEET
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC--CCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 77999999999999999999999988884222 34677889999 99987 56778999999999
Q ss_pred cccCcceeeEe---eceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee-eEEEEE
Q 012064 136 LERGGVETKLL---GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN-LNAIAI 211 (471)
Q Consensus 136 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 211 (471)
.+++.+....+ .+|...+.+..++ + .++++++.|++|++||+++++....+.. |... +.+++|
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~g----------H~~~vvs~vaf 334 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPP----------VSDQHWSFVKW 334 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECC----------C--CCCCEEEE
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecC----------CCCCeEEEEEE
Confidence 88766543211 3555555444444 4 5789999999999999999998888753 2223 446899
Q ss_pred cCCCCceEEEEeCCCeEEEEEc
Q 012064 212 DPRNANLFAVAGSDEYTRLYDI 233 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~ 233 (471)
+|+ +.+|++|+.|++|++||+
T Consensus 335 SPD-G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGT-DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSS-SSEEEEECTTSCEEEEEE
T ss_pred CCC-CCEEEEEECCCcEEEecC
Confidence 999 789999999999999996
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=1e-27 Score=239.89 Aligned_cols=314 Identities=8% Similarity=-0.009 Sum_probs=212.2
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccc---cEEEEEEcCCCCEEEEe
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG 79 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~s~~g~~l~s~ 79 (471)
+++|+|+|+++++ +.||+|++||.++++.. ..+.+|.. .|.+++|||||++|+++
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------VLIEGKKIESLRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------EEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------EEeccccccccccceEEECCCCCEEEEE
Confidence 5789999997776 68999999999988765 45566654 49999999999999998
Q ss_pred cCC---------CeEEEEECCCCceEEEee--cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec
Q 012064 80 SDD---------RRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (471)
Q Consensus 80 ~~d---------~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 148 (471)
+.+ +.+.+||+.+++. ..+. .+|...+..++|+| ||+.|++++. +.|++||+.+++.... ...
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~--~~~ 152 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRV--VST 152 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEE--ECC
T ss_pred ecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEE--ecC
Confidence 764 7899999998876 3331 23455588999999 9999999886 7999999988765432 222
Q ss_pred eee------------------eEEEEEEccCCCcEEEEEecCC----------------------------------eEE
Q 012064 149 HQG------------------RAHKLAIEPGSPHVFYTCGEDG----------------------------------LVQ 176 (471)
Q Consensus 149 ~~~------------------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~ 176 (471)
+.. .+.+++|+|||+ .|+.++.|+ .|+
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~ 231 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH 231 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence 222 237899999995 556655442 799
Q ss_pred EEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC----CCeEEEEEcCCCccCCCCCCCCCCCcCC
Q 012064 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (471)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (471)
+||+.+++....+..... ...+...+..++|+|| ++++++... +..|++||+.+++....
T Consensus 232 ~~d~~~~~~~~~l~~~~~----~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~----------- 295 (723)
T 1xfd_A 232 VIGLNGPTHDLEMMPPDD----PRMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKK----------- 295 (723)
T ss_dssp EEESSSSCCCEECCCCCC----GGGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEE-----------
T ss_pred EEECCCCceeEEeeCCcc----CCCccceeEEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEE-----------
Confidence 999988875444332110 0012457899999999 567766543 35799999987653211
Q ss_pred CCcccCCCccce----EEEEEcCCCCeEEEe-e--CC------cEEEEec-CCCCCCCCCCCCCccccccccccCCCCCC
Q 012064 253 PPNLIGDEQVGI----TGLAFSDQSELLVSY-N--DE------FIYLFTQ-DMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (471)
Q Consensus 253 ~~~~~~~~~~~i----~~~~~~~~~~~l~~~-~--~~------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (471)
....+...+ ..++|+|||+.|+.. + ++ .+++||. ..+...
T Consensus 296 ---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----------------------- 349 (723)
T 1xfd_A 296 ---HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND----------------------- 349 (723)
T ss_dssp ---EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-----------------------
T ss_pred ---EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-----------------------
Confidence 011112222 367999999977754 2 44 3677773 332100
Q ss_pred ccCCCCCCcccccCCeeee-cCCceeEeee-eeeeCCCCcEEEEeeCC---CeEEEEEccCC--eeeEEecC---CCcce
Q 012064 319 AASPSTANTDVRIAPQVYK-GHRNCVTVKG-VNFFGPKCEYVVSGSDC---GRIFIWKKKGG--ELIRVIEA---DRHVV 388 (471)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~s~~g~~l~~g~~d---g~v~iwd~~~~--~~~~~~~~---h~~~v 388 (471)
....+. ++.. +.. +.| +|||++|+..+.+ +.+++|++... .....+.. |...+
T Consensus 350 -------------~~~~l~~~~~~---~~~~~~~-spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 412 (723)
T 1xfd_A 350 -------------NIQSITSGDWD---VTKILAY-DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY 412 (723)
T ss_dssp -------------CCCBSCCSSSC---EEEEEEE-ETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred -------------ceeEeecCCeE---EEeeeEE-cCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCe
Confidence 011222 2222 333 577 9999999765544 78999998643 23344443 66778
Q ss_pred EEEEEcCCCCEEEEee
Q 012064 389 NCIEPHPHSTVLASSG 404 (471)
Q Consensus 389 ~~~~~s~~~~~l~s~~ 404 (471)
..++|+|||++|+...
T Consensus 413 ~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 413 FSASFSHSMDFFLLKC 428 (723)
T ss_dssp CEEEECTTSSEEEEEC
T ss_pred EEEEECCCCCEEEEEc
Confidence 9999999999777653
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=6.2e-27 Score=242.54 Aligned_cols=327 Identities=10% Similarity=0.045 Sum_probs=233.9
Q ss_pred CCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC--
Q 012064 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-- 82 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d-- 82 (471)
.+++ ++|+.++. +.|++|++.+++. +.+.+|.+.+.+++|||||++||+++.+
T Consensus 21 ~~S~--~~iaf~~~-~~l~~~~~~gg~~----------------------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~ 75 (1045)
T 1k32_A 21 DIHG--DRIIFVCC-DDLWEHDLKSGST----------------------RKIVSNLGVINNARFFPDGRKIAIRVMRGS 75 (1045)
T ss_dssp EEET--TEEEEEET-TEEEEEETTTCCE----------------------EEEECSSSEEEEEEECTTSSEEEEEEEEST
T ss_pred EEeC--CEEEEEEC-CcEEEEECCCCcE----------------------EEeeeCCCcccCeEECCCCCEEEEEEeecc
Confidence 4453 46776664 7899999997664 3677899999999999999999987643
Q ss_pred ----CeEEEEECCCCceEEEeecCCCcce-------eEEEEecCCCCeEEEEEeCC------CeEEEEeccccCcce---
Q 012064 83 ----RRVILWDWKTERVKLSFHSGHNDNV-------FQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVE--- 142 (471)
Q Consensus 83 ----~~i~iwd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~--- 142 (471)
..|++||+.+++. ..+ ..|...+ ..++|+| ||+.+++++.+ ..|..|++.++....
T Consensus 76 ~~~~~~i~~~d~~~g~~-~~l-t~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~ 151 (1045)
T 1k32_A 76 SLNTADLYFYNGENGEI-KRI-TYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL 151 (1045)
T ss_dssp TCCEEEEEEEETTTTEE-EEC-CCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS
T ss_pred CCCCCeEEEEECCCCCe-EEc-ccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecC
Confidence 4799999987763 455 6788888 9999999 99977777644 357777775543211
Q ss_pred --------------------------------------------eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEE
Q 012064 143 --------------------------------------------TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (471)
Q Consensus 143 --------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 178 (471)
...+.+|...+.++.|+++ .++++++.++.+.+|
T Consensus 152 ~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~ 229 (1045)
T 1k32_A 152 GPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIY 229 (1045)
T ss_dssp CSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEE
T ss_pred CCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEE
Confidence 0112346667788888876 577788888999999
Q ss_pred eccC-CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc
Q 012064 179 DLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (471)
Q Consensus 179 d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (471)
.+.. +.....+.. + ..+...+|+|+ +.+++.+ .++.|++||+...++. ....... ......
T Consensus 230 ~~~~~g~~~~~l~~----------~-~~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~----~~~~~~ 291 (1045)
T 1k32_A 230 STDLDGKDLRKHTS----------F-TDYYPRHLNTD-GRRILFS-KGGSIYIFNPDTEKIE-KIEIGDL----ESPEDR 291 (1045)
T ss_dssp EEETTSCSCEECCC----------C-CSSCEEEEEES-SSCEEEE-ETTEEEEECTTTCCEE-ECCCCCC----CBCCSE
T ss_pred EEeCCCCcceEecC----------C-CCcceeeEcCC-CCEEEEE-eCCEEEEecCCceEee-eeccCcc----cccccc
Confidence 8754 222222221 1 13456799999 5677776 5899999998443321 1100000 000011
Q ss_pred CCCccceEEEEEc-CCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee
Q 012064 258 GDEQVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (471)
Q Consensus 258 ~~~~~~i~~~~~~-~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
..+...+.+++|+ |+|++|+.++++.+++|+...+. ...+
T Consensus 292 ~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~---------------------------------------~~~~ 332 (1045)
T 1k32_A 292 IISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTY---------------------------------------VLKV 332 (1045)
T ss_dssp EEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSB---------------------------------------EEEC
T ss_pred cccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCc---------------------------------------eEEc
Confidence 1234568899999 99999999998899999986531 1223
Q ss_pred ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE-EEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF-IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~-iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
..+.. ..+..+.| + ||+.|++++.++.++ +||+.+++.. .+.+|...+..++|+|||++|++++.++.|++||+.
T Consensus 333 ~~~~~-~~~~~~~~-s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 333 PEPLR-IRYVRRGG-D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp SCCSC-EEEEEECS-S-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCCc-ceEEeeeE-c-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 33443 13788898 8 999999998888899 9999877654 444788899999999999999999999999999999
Q ss_pred CCCCcccC
Q 012064 416 AADRATLP 423 (471)
Q Consensus 416 ~~~~~~~~ 423 (471)
+++...+.
T Consensus 409 tg~~~~~~ 416 (1045)
T 1k32_A 409 TGKPTVIE 416 (1045)
T ss_dssp TCCEEEEE
T ss_pred CCceEEec
Confidence 88775554
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=8.1e-26 Score=204.08 Aligned_cols=308 Identities=11% Similarity=0.053 Sum_probs=201.3
Q ss_pred CCCCCCC-cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC-
Q 012064 4 ASNNNNN-KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD- 81 (471)
Q Consensus 4 ~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~- 81 (471)
+.|.+++ ..+++++.++.|++||.++++.. ..+..+...+ +++|+|+|+++++++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~-~~~~s~dg~~l~~~~~~ 60 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL---------------------NQITLGYDFV-DTAITSDCSNVVVTSDF 60 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE---------------------EEEECCCCEE-EEEECSSSCEEEEEEST
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee---------------------eeEEccCCcc-eEEEcCCCCEEEEEeCC
Confidence 4555654 45788889999999999988876 3444555666 9999999997666555
Q ss_pred CCeEEEEECCCCce-EEEeecCCCcceeEEEEecCCCCeEEEEEeCCC---eEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 82 DRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 82 d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
++.|.+||..+++. ...+ ..+..+..+++|+| ++++++++..++ .|.+||+.+++.... +. ......+++
T Consensus 61 ~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~~~~~~~ 134 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKVVAI-QEGQSSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFIST--IP-IPYDAVGIA 134 (331)
T ss_dssp TCEEEEEECSSSSCEEEEE-EECSSCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEE--EE-CCTTEEEEE
T ss_pred CCeEEEEECCCCceeEEec-ccCCCCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEE--EE-CCCCccceE
Confidence 88999999999887 5554 45566665599999 999999655553 899999987765543 33 334568999
Q ss_pred EccCCCcEEEEEecCCe-EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 158 IEPGSPHVFYTCGEDGL-VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
|+|+++.++++...++. |.+|++............... .......++|+|++..+++++..++.|++||+.++
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS------GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC------SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc------CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999766666677688 999999865433222110000 22346899999995335566667899999999876
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
+.... ..... ....+..++|+|+|++++.+. ++.|.+||..+++..
T Consensus 209 ~~~~~------------~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~------------------- 256 (331)
T 3u4y_A 209 ENITL------------LNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS------------------- 256 (331)
T ss_dssp TSCEE------------EEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE-------------------
T ss_pred cccce------------eeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee-------------------
Confidence 63100 00111 124567899999999776655 447999998775320
Q ss_pred CCCCccCCCCCCcccccCCeeeecC----Cce-eEeeeeeeeCCCCcEEEEee-CCCeEEEEEccCCeeeEEecCCCcce
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGH----RNC-VTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVV 388 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~h~~~v 388 (471)
.+..+..+ ... .....++| +|||++|++++ .++.|.+||+.... +....+....-
T Consensus 257 -----------------~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g 317 (331)
T 3u4y_A 257 -----------------FVKSFGHGLLIDPRPLFGANQMAL-NKTETKLFISANISRELKVFTISGKV-VGYVAGIEANG 317 (331)
T ss_dssp -----------------EEEEEECCCCCCCGGGTTCCCEEE-CTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBS
T ss_pred -----------------eecccccccccCCCCcccccceEE-CCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccC
Confidence 01111111 110 00245787 99999887655 46799999996643 33343333222
Q ss_pred EEEEEcCC
Q 012064 389 NCIEPHPH 396 (471)
Q Consensus 389 ~~~~~s~~ 396 (471)
....++|+
T Consensus 318 ~~~~~~~~ 325 (331)
T 3u4y_A 318 GIAICHPD 325 (331)
T ss_dssp CEEECCCC
T ss_pred CeEEECCc
Confidence 23334444
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=1.4e-26 Score=230.96 Aligned_cols=332 Identities=11% Similarity=0.068 Sum_probs=208.4
Q ss_pred CcEEEEecCCCeEEEEEcccCccc-cccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLS-TRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
+..+++++.|+ | +||..+|+.. ...+....... ....-.. ....+...|.+++|||| +.++.+ .++.|++|
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~~--~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~ 106 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGCK--FQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGF 106 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-------------CCCEEEEETTT-TEEEEE-ETTEEEEE
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchhc--cccccccCceeEEECCC-CeEEEE-ECCEEEEE
Confidence 55667777788 8 9999998872 21111000000 0000000 00112357999999999 555555 35899999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc-----cCcceeeEeeceeee-----------
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----RGGVETKLLGKHQGR----------- 152 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~----------- 152 (471)
|+.+++... + ..+...+.+++|+| ||++|+++ .++.|++|++.+ ++.... ...+...
T Consensus 107 d~~~~~~~~-l-~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 107 DMLARKVTY-L-FDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp ETTTTEEEE-E-ECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGGC
T ss_pred ECCCCceEE-c-cCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhhh
Confidence 999887643 3 35677899999999 99999985 679999999987 654432 2222222
Q ss_pred ---EEEEEEccCCCcEEEEEe---------------------------------cCCeEEEEeccCCccceeeeecccCC
Q 012064 153 ---AHKLAIEPGSPHVFYTCG---------------------------------EDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 153 ---v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
+.+++|+||++ .|++++ .+..|++||+++++........
T Consensus 180 ~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---- 254 (706)
T 2z3z_A 180 FGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE---- 254 (706)
T ss_dssp TTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS----
T ss_pred cCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC----
Confidence 47899999995 556665 3467999999988654332110
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEEEeCCC-----eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDE-----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (471)
.+...+.+++|+|+ +++|++++.++ .|++||+.+++...... ..........+..++|+|
T Consensus 255 ----~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~----------~~~~~~~~~~~~~~~~sp 319 (706)
T 2z3z_A 255 ----PKEKFLTNLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRFVRTLF----------VETDKHYVEPLHPLTFLP 319 (706)
T ss_dssp ----CTTCEEEEEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE----------EEECSSCCCCCSCCEECT
T ss_pred ----CCceeEeeEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE----------EccCCCeECccCCceeec
Confidence 03346899999999 67788777665 89999998862110000 000000011235689999
Q ss_pred --CCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeee-
Q 012064 272 --QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG- 347 (471)
Q Consensus 272 --~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 347 (471)
+|++++++. ++.+++|.++.. ......+..+... +..
T Consensus 320 ~~dg~~l~~~~~~g~~~l~~~~~~-------------------------------------~~~~~~l~~~~~~--v~~~ 360 (706)
T 2z3z_A 320 GSNNQFIWQSRRDGWNHLYLYDTT-------------------------------------GRLIRQVTKGEWE--VTNF 360 (706)
T ss_dssp TCSSEEEEEECTTSSCEEEEEETT-------------------------------------SCEEEECCCSSSC--EEEE
T ss_pred CCCCEEEEEEccCCccEEEEEECC-------------------------------------CCEEEecCCCCeE--EEee
Confidence 999888776 556777776521 1122333444433 555
Q ss_pred eeeeCCCCcEEEEee-CCC----eEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecC----CcEEEecCCCCC
Q 012064 348 VNFFGPKCEYVVSGS-DCG----RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE----SDIKILTPNAAD 418 (471)
Q Consensus 348 ~~~~s~~g~~l~~g~-~dg----~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 418 (471)
+.| +|+|+.|+.++ .++ .|+.||+.+++ ...+. |...+..++|+|||++++....+ +.|++||+.+++
T Consensus 361 ~~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 361 AGF-DPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEE-CTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEE-cCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 677 99998876554 444 67778877765 34443 66779999999999988766443 569999998775
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1e-25 Score=204.51 Aligned_cols=311 Identities=11% Similarity=0.105 Sum_probs=196.2
Q ss_pred cEEEEecCCCeEEEEEccc-CccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC-CeEEEE
Q 012064 11 KRARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-RRVILW 88 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d-~~i~iw 88 (471)
..+++++.|+.|++|+++. ++.. .... ..|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALT-------------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEE-------------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEE-------------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 3455558899999999963 3221 1122 2467788999999999988888876 899999
Q ss_pred ECC--CCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 89 DWK--TERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 89 d~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
++. +++. +..+ ..+ ..+..++|+| +++++++++. ++.|.+||+.++..............+.+++|+|+++
T Consensus 66 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 66 RIAPDDGALTFAAES-ALP-GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR 141 (343)
T ss_dssp EECTTTCCEEEEEEE-ECS-SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS
T ss_pred EecCCCCceeecccc-ccC-CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCC
Confidence 997 5553 2333 233 3789999999 9998876654 8899999995222111111222334588899999996
Q ss_pred cEEEEEecCCeEEEEeccC-Cccceee--eecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--Ccc
Q 012064 164 HVFYTCGEDGLVQHFDLRT-GAATELF--TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKW 238 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~ 238 (471)
.+++++..++.|++||+.+ ++..... ..... ....+..++|+|++..+++++..++.+.+|++.. ++.
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV-------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS-------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccccC-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 5544444899999999987 5433221 11100 1235678999999433445555889999999964 221
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
...... ............+..++|+|+|++|+.+. ++.+.+|++.....
T Consensus 215 ~~~~~~-------~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~---------------------- 265 (343)
T 1ri6_A 215 ECVQTL-------DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS---------------------- 265 (343)
T ss_dssp EEEEEE-------ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC----------------------
T ss_pred EEEeec-------cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC----------------------
Confidence 000000 00000001134567899999998877544 56899999873100
Q ss_pred CCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-CCCeEEEEEcc--CCee--eEEecCCCcceEEE
Q 012064 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK--GGEL--IRVIEADRHVVNCI 391 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~~--~~~~--~~~~~~h~~~v~~~ 391 (471)
.......+..+.. +..++| +|+|++|++++ .++.|.+|++. +++. +..+.. .....++
T Consensus 266 ------------~~~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i 328 (343)
T 1ri6_A 266 ------------VLSKEGFQPTETQ---PRGFNV-DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWV 328 (343)
T ss_dssp ------------CEEEEEEEECSSS---CCCEEE-CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEE
T ss_pred ------------ceEEeeeecCCCc---cceEEE-CCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeE
Confidence 0112223333322 678888 99999888877 67999999554 5543 344443 2456677
Q ss_pred EEcCCCC
Q 012064 392 EPHPHST 398 (471)
Q Consensus 392 ~~s~~~~ 398 (471)
+|.|+.+
T Consensus 329 ~~~~~~~ 335 (343)
T 1ri6_A 329 VVNAHEG 335 (343)
T ss_dssp EEEEEC-
T ss_pred EEEcccC
Confidence 7776543
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=2.7e-25 Score=200.69 Aligned_cols=287 Identities=14% Similarity=0.093 Sum_probs=196.6
Q ss_pred EEcCCCC-EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcceeeE
Q 012064 68 SFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKL 145 (471)
Q Consensus 68 ~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~ 145 (471)
.|.++++ .+++++.++.|.+||..+++....+. .+.... .++|+| +++++++++. ++.|.+||+.+++... ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~-~~ 78 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKV-VA 78 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEE-EE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeE-Ee
Confidence 4555554 47788889999999999999877774 445566 999999 9987766655 8899999998877621 22
Q ss_pred eeceeeeEEEEEEccCCCcEEEEEecC-C--eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 146 LGKHQGRAHKLAIEPGSPHVFYTCGED-G--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
+..+..+..+++|+|+++ .++++..+ + .|.+||+++++....+.. .....+++|+|++..++++.
T Consensus 79 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------PYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------CTTEEEEEECTTSSCEEEEE
T ss_pred cccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEEC-----------CCCccceEECCCCCEEEEEe
Confidence 555555555599999995 45555554 3 899999999887766542 22458999999954455666
Q ss_pred eCCCe-EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCC
Q 012064 223 GSDEY-TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPP 299 (471)
Q Consensus 223 ~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~ 299 (471)
..++. +.+|++......... . .... ........++|+|+|++++.+. ++.|++||+.++...
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~---------~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---- 211 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDT---------G-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---- 211 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEE---------E-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC----
T ss_pred cCCCceEEEEEECCCCcEeec---------C-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc----
Confidence 66688 999998753311000 0 0111 1234478999999999765554 568999998764220
Q ss_pred CCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-CCCeEEEEEccCCee-
Q 012064 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL- 377 (471)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~~~~~~- 377 (471)
.....+..+.. +..++| +|||++++.++ .++.|.+||+.+++.
T Consensus 212 -------------------------------~~~~~~~~~~~---~~~~~~-spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 212 -------------------------------TLLNAVGTNNL---PGTIVV-SRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp -------------------------------EEEEEEECSSC---CCCEEE-CTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred -------------------------------ceeeeccCCCC---CceEEE-CCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 01233333322 678888 99999776554 578899999998877
Q ss_pred -eEEecCC----Ccc---eEEEEEcCCCCEEEEee-cCCcEEEecCCCCCCcc
Q 012064 378 -IRVIEAD----RHV---VNCIEPHPHSTVLASSG-IESDIKILTPNAADRAT 421 (471)
Q Consensus 378 -~~~~~~h----~~~---v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~ 421 (471)
+..+..+ ... ...++|+||+++|+.++ .++.|.+|++.......
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence 4433322 222 35689999999876555 46799999998765533
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.8e-26 Score=230.12 Aligned_cols=293 Identities=13% Similarity=0.105 Sum_probs=206.3
Q ss_pred cccEEEEEEcCCCCEEEEecC-CC-----eEEEEECCCCceEEEeecCCC------------------------cceeEE
Q 012064 61 RGCVNTVSFNTDGDILISGSD-DR-----RVILWDWKTERVKLSFHSGHN------------------------DNVFQA 110 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~~v~~~ 110 (471)
...+.+++|||||++|++++. |+ .|++||+.+++....+ ..+. ..+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 9999999998875554 3332 348899
Q ss_pred EEecCCCCeEEEEEeCCCeEEEEeccccC--cceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcccee
Q 012064 111 KIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188 (471)
Q Consensus 111 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 188 (471)
+|+| ||++|++++. +.|++||+.++. .... +..|...+..++|+|||+ .++.++ ++.|++||+.+++....
T Consensus 115 ~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ--LTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB--CCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE--cccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEe
Confidence 9999 9999999886 899999998772 2222 566778899999999995 556555 56999999998765443
Q ss_pred eeecccCCcCcc------eeeeeeEEEEEcCCCCceEEEEeCCC---------------------------------eEE
Q 012064 189 FTCRPIDDRRNY------MTVVNLNAIAIDPRNANLFAVAGSDE---------------------------------YTR 229 (471)
Q Consensus 189 ~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg---------------------------------~i~ 229 (471)
..........+. .....+.+++|+|| +++|++++.|+ .|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 221100000000 00012478999999 67777776655 788
Q ss_pred EEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC------CcEEEEecCCCCCCCCCCCCC
Q 012064 230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND------EFIYLFTQDMGLGPNPPPSSP 302 (471)
Q Consensus 230 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~i~i~d~~~~~~~~~~~~~~ 302 (471)
+||+.+ ++.... .....+...+..++| |||++|+.... ..|++||+.++.
T Consensus 267 ~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~--------- 323 (741)
T 2ecf_A 267 VISPAEQAQTQWI-------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ--------- 323 (741)
T ss_dssp EECSSTTCCCEEE-------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------
T ss_pred EEECCCCCceEEe-------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------
Confidence 889877 542110 001135678999999 99999886542 269999987752
Q ss_pred ccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc-ee-EeeeeeeeCCCCcEEEEeeCCCeEEEEEcc-CCeeeE
Q 012064 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-CV-TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIR 379 (471)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~-~~~~~~ 379 (471)
....+..+.. .. .+..+.| +|||+++++++.||.++||.+. +++ ..
T Consensus 324 -----------------------------~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 324 -----------------------------QRVLAHETSPTWVPLHNSLRF-LDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp -----------------------------EEEEEEEECSSCCCCCSCCEE-CTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred -----------------------------eEEEEEcCCCCcCCcCCceEE-CCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 1222222221 00 1457788 9999999999999987777765 455 77
Q ss_pred EecCCCcceEEE-EEcCCCCEEE-EeecCC--cEEEecCCC
Q 012064 380 VIEADRHVVNCI-EPHPHSTVLA-SSGIES--DIKILTPNA 416 (471)
Q Consensus 380 ~~~~h~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iw~~~~ 416 (471)
.+..|...+..+ .|+|+++.|+ +++.++ .++||++..
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 888888888887 5999999765 455555 899998863
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=4.3e-26 Score=202.27 Aligned_cols=257 Identities=12% Similarity=0.076 Sum_probs=175.4
Q ss_pred EecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCC-C
Q 012064 15 TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-E 93 (471)
Q Consensus 15 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~ 93 (471)
.++.|++|++||+++++.. .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----------------------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP 73 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----------------------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC
T ss_pred CCCcceeEEEEeCCCCcee----------------------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC
Confidence 4567899999999977654 4556889999999999999999986 78999999998 7
Q ss_pred ceEEEeecCC-CcceeEEEEecCCCCeEEEEEe--CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe
Q 012064 94 RVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 94 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
+..... ..+ ...+.+++|+| ++++|++++ .++..++|.+....... ..+..+ ..+..++|+|+++.++++++
T Consensus 74 ~~~~~~-~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 74 SPEKVD-TGFATICNNDHGISP--DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp SCEECC-CTTCCCBCSCCEECT--TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEE
T ss_pred CceEec-cccccccccceEECC--CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEEC
Confidence 765444 444 47889999999 999999998 44556666654322222 123333 34888999999976666888
Q ss_pred cCCeEEEEeccC--CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCccCCCCCCCCC
Q 012064 171 EDGLVQHFDLRT--GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 171 ~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~ 247 (471)
.++.+++|+++. ++.. .+.. +...+.+++|+|+ +.+++.++ .++.+++|++....
T Consensus 149 ~~~~~~l~~~~~~~~~~~-~~~~----------~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~---------- 206 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVET-RLTH----------GEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDG---------- 206 (297)
T ss_dssp ETTEEEEEEEETTTCCEE-ECCC----------SSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTS----------
T ss_pred CCCceEEEEEECCCCcce-Eccc----------CCCccccceECCC-CCEEEEEecCCCCccEEEECCCC----------
Confidence 999999998643 3221 1111 2335677888887 44444433 46777777664211
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCc
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (471)
T Consensus 207 -------------------------------------------------------------------------------- 206 (297)
T 2ojh_A 207 -------------------------------------------------------------------------------- 206 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC-----------CeEEEEEccCCee--eEEecCCCcceEEEEEc
Q 012064 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----------GRIFIWKKKGGEL--IRVIEADRHVVNCIEPH 394 (471)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d-----------g~v~iwd~~~~~~--~~~~~~h~~~v~~~~~s 394 (471)
.....+..+.. .+..+.| +|+|++|++++.+ +.|++||+.+++. +..+.+|...+..++|+
T Consensus 207 ---~~~~~~~~~~~--~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 207 ---SSVERITDSAY--GDWFPHP-SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp ---SCEEECCCCSE--EEEEEEE-CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred ---CCcEEEecCCc--ccCCeEE-CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 00011111111 1455565 6777766665544 5799999988765 34455788899999999
Q ss_pred CCCCEEEEeecCC
Q 012064 395 PHSTVLASSGIES 407 (471)
Q Consensus 395 ~~~~~l~s~~~dg 407 (471)
|++++|++++.+.
T Consensus 281 pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEECC
T ss_pred CCCCEEEEEEecc
Confidence 9999998887653
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=4.9e-26 Score=206.52 Aligned_cols=286 Identities=11% Similarity=0.121 Sum_probs=185.8
Q ss_pred EEEEecCCCeEEEEECC-CCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-CeEEEEecc--ccCcceeeEeecee
Q 012064 75 ILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQIL--ERGGVETKLLGKHQ 150 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~~~~~~ 150 (471)
.+++++.++.|++||+. +++........+...+.+++|+| ++++|++++.+ +.|.+|++. ++.......+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP- 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence 44555789999999985 34322111135777899999999 99998888876 999999997 4443332223333
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCCeEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTR 229 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~ 229 (471)
..+..++|+|+++.+++++..++.|.+||+..+.......... ....+.+++|+|+ +.++++++ .++.|+
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--------GLDGCHSANISPD-NRTLWVPALKQDRIC 154 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------CCTTBCCCEECTT-SSEEEEEEGGGTEEE
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--------CCCCceEEEECCC-CCEEEEecCCCCEEE
Confidence 3788999999996555555568999999995332222221111 2224788999999 55666655 899999
Q ss_pred EEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCcccc
Q 012064 230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (471)
Q Consensus 230 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~ 306 (471)
+||+.+ ++..... ...........+..++|+|++++++.++ ++.+.+|++........
T Consensus 155 ~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~--------- 215 (343)
T 1ri6_A 155 LFTVSDDGHLVAQD----------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE--------- 215 (343)
T ss_dssp EEEECTTSCEEEEE----------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE---------
T ss_pred EEEecCCCceeeec----------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE---------
Confidence 999986 4321000 0011111234678899999999776554 56899999854210000
Q ss_pred ccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeeeeCCCCcEEEE-eeCCCeEEEEEcc----CCeeeEE
Q 012064 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKK----GGELIRV 380 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~g~~l~~-g~~dg~v~iwd~~----~~~~~~~ 380 (471)
.......+. ++.....+..++| +|+|++|++ +..++.|++||+. ..+.+..
T Consensus 216 ----------------------~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 216 ----------------------CVQTLDMMPENFSDTRWAADIHI-TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp ----------------------EEEEEECSCTTCCSCCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred ----------------------EEeeccccCccccccCCccceEE-CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 000000011 1111122667888 999998874 4578999999997 2345555
Q ss_pred ecCCCcceEEEEEcCCCCEEEEee-cCCcEEEecCC
Q 012064 381 IEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN 415 (471)
Q Consensus 381 ~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 415 (471)
+..+.. +..++|+|++++|++++ .++.|.+|+++
T Consensus 273 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 273 QPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 555544 89999999999888777 68999999554
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.8e-25 Score=202.36 Aligned_cols=278 Identities=11% Similarity=0.024 Sum_probs=198.7
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec-cccc-cEEEEEEcCCCCEE-EEecCCCeEEE
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRG-CVNTVSFNTDGDIL-ISGSDDRRVIL 87 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~-~V~~~~~s~~g~~l-~s~~~d~~i~i 87 (471)
.++++++.++.|++||..+++.+ ..+. ++.. .+..++|+|+|+++ ++++.++.|.+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 60 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD---------------------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE---------------------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEE---------------------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEE
Confidence 57899999999999999988766 3333 2222 47889999999765 55666889999
Q ss_pred EECCCCceEEEeecCC----CcceeEEEEecCCCCeEEEEEe------------CCCeEEEEeccccCcceeeEeeceee
Q 012064 88 WDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA------------ADGQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 88 wd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
||+.+++.+..+..++ ...+.+++|+| +++++++++ .++.|.+||+.+++.... +. ...
T Consensus 61 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~ 135 (337)
T 1pby_B 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--FE-APR 135 (337)
T ss_dssp EETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EE-CCS
T ss_pred EECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECCCCcEEEE--Ee-CCC
Confidence 9999999877664333 22678899999 999988886 579999999977655433 32 234
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC-----
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE----- 226 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----- 226 (471)
.+.+++|+|+++. ++++ ++.|++||+++++....+..... ...+.|+|++..+++++..++
T Consensus 136 ~~~~~~~s~dg~~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 136 QITMLAWARDGSK-LYGL--GRDLHVMDPEAGTLVEDKPIQSW-----------EAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp SCCCEEECTTSSC-EEEE--SSSEEEEETTTTEEEEEECSTTT-----------TTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred CcceeEECCCCCE-EEEe--CCeEEEEECCCCcEeeeeecccc-----------CCCceeCCCccEEeeeccCCCceeee
Confidence 5778999999964 4555 68899999999877655542210 012267888443333333333
Q ss_pred ------------------eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEe
Q 012064 227 ------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (471)
Q Consensus 227 ------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d 288 (471)
.|.+||+.+++.. . .....+...+.+++|+|+|++++++ ++.|++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~-------------~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d 266 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-M-------------REVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFD 266 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E-------------EEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEE
T ss_pred eeccccccccccccccccceEEEeCCCCCce-E-------------eecCCCCCceeeEEECCCCCEEEEe-CCeEEEEE
Confidence 4689998876532 1 0112234567889999999998888 68999999
Q ss_pred cCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEE
Q 012064 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (471)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~ 368 (471)
+.++ .....+..... +.+++| +|+|++|++++.++.|+
T Consensus 267 ~~~~--------------------------------------~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 267 LEKN--------------------------------------ASIKRVPLPHS---YYSVNV-STDGSTVWLGGALGDLA 304 (337)
T ss_dssp TTTT--------------------------------------EEEEEEECSSC---CCEEEE-CTTSCEEEEESBSSEEE
T ss_pred CCCC--------------------------------------cCcceecCCCc---eeeEEE-CCCCCEEEEEcCCCcEE
Confidence 8764 22233332222 678888 99999999998999999
Q ss_pred EEEccCCeeeEEecCCC
Q 012064 369 IWKKKGGELIRVIEADR 385 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~ 385 (471)
+||+.+++.+..+..+.
T Consensus 305 v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 305 AYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEETTTCCEEEEEECGG
T ss_pred EEECcCCcEEEEEEcCC
Confidence 99999999888876554
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=4.8e-25 Score=199.48 Aligned_cols=270 Identities=8% Similarity=0.045 Sum_probs=193.8
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCc-ceeEEEEecCCCCeEE-EEEeCCCeEEEEeccccCcceeeEeec---
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGK--- 148 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 148 (471)
++|++++.++.|.+||..+++.+..+..++.. .+..++|+| +++++ +++..++.|.+||+.+++.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47899999999999999999887777433332 478899999 99765 455667899999998877654422222
Q ss_pred eeeeEEEEEEccCCCcEEEEEe------------cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 149 HQGRAHKLAIEPGSPHVFYTCG------------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
+...+.+++|+|+++ .++++. .++.|.+||+.+++....+.. ...+.+++|+|+ +
T Consensus 80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g 146 (337)
T 1pby_B 80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARD-G 146 (337)
T ss_dssp EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTT-S
T ss_pred ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCC-C
Confidence 233677899999995 455554 479999999998877665542 224678899999 5
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC-------------
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE------------- 282 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~------------- 282 (471)
.+++++ ++.|++||+.+++........ .... .+.|+|+++.++... .+
T Consensus 147 ~~l~~~--~~~i~~~d~~~~~~~~~~~~~-------------~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPEAGTLVEDKPIQ-------------SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp SCEEEE--SSSEEEEETTTTEEEEEECST-------------TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred CEEEEe--CCeEEEEECCCCcEeeeeecc-------------ccCC---CceeCCCccEEeeeccCCCceeeeeeccccc
Confidence 666666 688999999887643221110 0011 126788887665444 21
Q ss_pred -----------cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeee
Q 012064 283 -----------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (471)
Q Consensus 283 -----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
.+.+||..+++. ....+..+... +.+++|
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~-------------------------------------~~~~~~~~~~~--~~~~~~- 248 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEM-------------------------------------AMREVRIMDVF--YFSTAV- 248 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCE-------------------------------------EEEEEEECSSC--EEEEEE-
T ss_pred cccccccccccceEEEeCCCCCc-------------------------------------eEeecCCCCCc--eeeEEE-
Confidence 356777765421 01122233322 677888
Q ss_pred CCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 352 s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+|||++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++||+.+++.
T Consensus 249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 9999999988 699999999999888777643 4678999999999999889999999999998765
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=5.6e-24 Score=193.84 Aligned_cols=276 Identities=11% Similarity=0.069 Sum_probs=202.0
Q ss_pred ccccEEEEEEcCCCCEEEEecC-------CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEE
Q 012064 60 HRGCVNTVSFNTDGDILISGSD-------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVR 131 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~ 131 (471)
....+..++|+|+|+++++++. ++.|.+||..+++.+..+.. ...+..++|+| ++++++ +...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~--dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINN--TTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEET--TTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECC--CCCEEEEEecCCCEEE
Confidence 4566889999999998887774 56899999999998777732 34578899999 988655 455579999
Q ss_pred EEeccccCcceeeEeeceee---------eEEEEEEccCCCcEEEEE-ecCCeEEEEeccCCccceeeeecccCCcCcce
Q 012064 132 HAQILERGGVETKLLGKHQG---------RAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (471)
+||..+++.... +..+.. .+.+++|+|+++.++++. +.++.|.+||+++++....+..
T Consensus 115 ~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---------- 182 (353)
T 3vgz_A 115 AIDAKTGEVKGR--LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN---------- 182 (353)
T ss_dssp EEETTTCCEEEE--EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------
T ss_pred EEeCCCCeeEEE--EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC----------
Confidence 999988776554 332221 278899999996554444 3578999999999887766542
Q ss_pred eeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-
Q 012064 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN- 280 (471)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 280 (471)
....+.+++|+|+ +.++++++.++.+.+||..+++........ ...+...+..++|+|++++++.++
T Consensus 183 ~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 183 TGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLL-----------DDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp CCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECC-----------CSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcC-----------CCCCCcccceEEECCCCCEEEEEeC
Confidence 1123678899999 678888888999999999987644321110 112344678899999999777665
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 281 -~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
++.+.+||..+++ ....+.... ...+.| +|+|++++
T Consensus 251 ~~~~v~~~d~~~~~--------------------------------------~~~~~~~~~----~~~~~~-s~dg~~l~ 287 (353)
T 3vgz_A 251 KAAEVLVVDTRNGN--------------------------------------ILAKVAAPE----SLAVLF-NPARNEAY 287 (353)
T ss_dssp SSSEEEEEETTTCC--------------------------------------EEEEEECSS----CCCEEE-ETTTTEEE
T ss_pred CCCEEEEEECCCCc--------------------------------------EEEEEEcCC----CceEEE-CCCCCEEE
Confidence 3589999997642 122222222 245777 99999766
Q ss_pred Eee-CCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCC
Q 012064 360 SGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES 407 (471)
Q Consensus 360 ~g~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 407 (471)
+++ .++.|.+||..+++.+..+..+ ..+..++|+|||++|+.+..++
T Consensus 288 v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 555 6899999999999988887654 4689999999999777666553
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=8.5e-25 Score=212.88 Aligned_cols=272 Identities=14% Similarity=0.066 Sum_probs=196.4
Q ss_pred ccccEEEEEEcCCCCEEEEecC-CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC---CCeEEEEec
Q 012064 60 HRGCVNTVSFNTDGDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQI 135 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~ 135 (471)
+..+|.+++|+|||++||+++. ||+++||++..++. ..+...+...+..++|+| | +.+++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEEE
Confidence 3568999999999999999887 99999999866554 555333336899999999 8 77777765 455677666
Q ss_pred cc--cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 136 LE--RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 136 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
.. ...... +.... .....+|+|+++.++++.+.++.+.+||+++++...... +. ..+++|+|
T Consensus 96 ~~~~~g~~~~--l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------~~--~~~~~~sp 159 (582)
T 3o4h_A 96 NTSRPGEEQR--LEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------LP--GFGFVSDI 159 (582)
T ss_dssp ETTSTTCCEE--CTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------ES--SCEEEEEE
T ss_pred eccCCCcccc--ccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------CC--CceEEECC
Confidence 44 322221 22222 233568888887666666666667799999887654443 11 17889999
Q ss_pred CCCceEEEEeCC----CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC--cEEE
Q 012064 214 RNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYL 286 (471)
Q Consensus 214 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--~i~i 286 (471)
| ++++++++.+ +.|++||+.+++. .....+...+..++|+|||++|+++. ++ .|++
T Consensus 160 D-G~~la~~~~~~~~~~~i~~~d~~~g~~----------------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 160 R-GDLIAGLGFFGGGRVSLFTSNLSSGGL----------------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp E-TTEEEEEEEEETTEEEEEEEETTTCCC----------------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred C-CCEEEEEEEcCCCCeEEEEEcCCCCCc----------------eEeecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence 9 6888877766 7899999987652 22345567789999999999999665 45 6999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeee--------eeCCCCcEE
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN--------FFGPKCEYV 358 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~g~~l 358 (471)
||+.++... .+.++... +..+. | +|||+++
T Consensus 223 ~d~~~~~~~---------------------------------------~~~~~~~~--~~~~~~~~~~~~~~-spdg~~~ 260 (582)
T 3o4h_A 223 VDPRDGSVE---------------------------------------DLELPSKD--FSSYRPTAITWLGY-LPDGRLA 260 (582)
T ss_dssp ECTTTCCEE---------------------------------------ECCCSCSH--HHHHCCSEEEEEEE-CTTSCEE
T ss_pred EcCCCCcEE---------------------------------------EccCCCcC--hhhhhhccccceeE-cCCCcEE
Confidence 999875321 22333322 33344 7 9999999
Q ss_pred EEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCC---cEEEecCCC
Q 012064 359 VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNA 416 (471)
Q Consensus 359 ~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~ 416 (471)
++++.||.+++|++ ++... .+.+.+.+++|+ +++++++++.+. .+++|+..+
T Consensus 261 ~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999999 66554 344678999999 999999888774 478888764
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.2e-24 Score=216.93 Aligned_cols=296 Identities=9% Similarity=0.061 Sum_probs=197.0
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
+++++|+ ++++.+. |+.|++||+.+++.. .+..|...+.+++|||||++|+++ .+
T Consensus 86 ~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~----------------------~l~~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 86 RTLDAGR-GLVVLFT-QGGLVGFDMLARKVT----------------------YLFDTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp EEEETTT-TEEEEEE-TTEEEEEETTTTEEE----------------------EEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred eEEECCC-CeEEEEE-CCEEEEEECCCCceE----------------------EccCCcccccCCcCCCCCCEEEEE-EC
Confidence 4678999 5655553 599999999977654 344567778999999999999985 67
Q ss_pred CeEEEEECCC-----CceEEEeecCCCcc--------------eeEEEEecCCCCeEEEEEe------------------
Q 012064 83 RRVILWDWKT-----ERVKLSFHSGHNDN--------------VFQAKIMPFTDDRSIVTCA------------------ 125 (471)
Q Consensus 83 ~~i~iwd~~~-----~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~l~s~~------------------ 125 (471)
+.|++||+.+ ++..... ..+... +.++.|+| ||++|++++
T Consensus 141 ~~i~v~~~~~~~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp TEEEEEECBCTTSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred CeEEEEecCcccccCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCC
Confidence 9999999998 7764333 333332 48899999 999999987
Q ss_pred ---------------CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC-----eEEEEeccCCcc
Q 012064 126 ---------------ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAA 185 (471)
Q Consensus 126 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 185 (471)
.+..|++||+.+++.........|...+..++|+|+++ .+++++.++ .|++||+++++.
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCce
Confidence 44689999998766433211224667899999999995 566666665 899999999843
Q ss_pred ceeeeecccCCcCcceeeeeeEEEEEcC--CCCceEEEEeCCCeEEEEEcC-CCccCCCCCCCCCCCcCCCCcccCCCcc
Q 012064 186 TELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (471)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (471)
...+....... ....+.+++|+| + +.+++++..++.+++|++. .++. ......+..
T Consensus 297 ~~~~~~~~~~~-----~~~~~~~~~~sp~~d-g~~l~~~~~~g~~~l~~~~~~~~~---------------~~~l~~~~~ 355 (706)
T 2z3z_A 297 VRTLFVETDKH-----YVEPLHPLTFLPGSN-NQFIWQSRRDGWNHLYLYDTTGRL---------------IRQVTKGEW 355 (706)
T ss_dssp EEEEEEEECSS-----CCCCCSCCEECTTCS-SEEEEEECTTSSCEEEEEETTSCE---------------EEECCCSSS
T ss_pred eeEEEEccCCC-----eECccCCceeecCCC-CEEEEEEccCCccEEEEEECCCCE---------------EEecCCCCe
Confidence 33332111000 001246789999 8 6788999999999999876 2221 112223455
Q ss_pred ceEE-EEEcCCCCeEEEee-C-C----cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCee
Q 012064 263 GITG-LAFSDQSELLVSYN-D-E----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (471)
Q Consensus 263 ~i~~-~~~~~~~~~l~~~~-~-~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (471)
.+.. ++|+|+|+.|+..+ + + .++.||..++. ...
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------------------------------------~~~ 396 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---------------------------------------TKD 396 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---------------------------------------CEE
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---------------------------------------cee
Confidence 5666 79999999876554 3 2 46666665431 112
Q ss_pred eecCCceeEeeeeeeeCCCCcEEEEeeCC----CeEEEEEccCCeeeEEecCCCcceEEEEE
Q 012064 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDC----GRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 336 ~~~~~~~~~i~~~~~~s~~g~~l~~g~~d----g~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (471)
+. +... +.+++| +|||++++....+ +.|++||+.+++ ...+ .+...+....+
T Consensus 397 l~-~~~~--~~~~~~-spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~-~~~~~~~~~~~ 452 (706)
T 2z3z_A 397 LT-PESG--MHRTQL-SPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL-EAKNPDTGYAM 452 (706)
T ss_dssp SC-CSSS--EEEEEE-CTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEE-ECC------CC
T ss_pred cc-CCCc--eEEEEE-CCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeec-cccchhhhcCC
Confidence 22 2222 678888 9999988876443 579999998887 3333 23333444444
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.4e-25 Score=224.35 Aligned_cols=299 Identities=11% Similarity=0.079 Sum_probs=196.9
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCc---ceeEEEEecCCCCeEEEEEeCC---------CeE
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAAD---------GQV 130 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~d---------g~i 130 (471)
.+.+++|+|||+++++ +.||+|++||+.+++....+ ..|.. .|.+++|+| ||++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence 4678899999997776 78999999999999876555 55554 499999999 99999998764 788
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC-cCcce-------e
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYM-------T 202 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~-------~ 202 (471)
.+||+.+++.........|...+..++|+|+|+ .++.++. +.|++||+.+++............ ..+.. .
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 899998877532211234445588899999995 4566554 799999999887655443211000 00000 0
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCC----------------------------------eEEEEEcCCCccCCCCCCCCCC
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQPA 248 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~~ 248 (471)
...+.+++|+|| ++.|++++.++ .|++||+.+++....+
T Consensus 172 ~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l------ 244 (723)
T 1xfd_A 172 LKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM------ 244 (723)
T ss_dssp SSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC------
T ss_pred ccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe------
Confidence 012378999999 67777776442 7888998776521110
Q ss_pred CcCCCCcccCCCccceEEEEEcCCCCeEEEee-C----CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
........+...+..++|+|||++|++.. . ..|++||+.++.
T Consensus 245 ---~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------------------------------ 291 (723)
T 1xfd_A 245 ---MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------------------------------ 291 (723)
T ss_dssp ---CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC------------------------------
T ss_pred ---eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc------------------------------
Confidence 00011112356789999999999887654 2 259999987752
Q ss_pred CCCcccccCCeeeec-CCceeE--eeeeeeeCCCCcEEEE--eeCCC------eEEEEE-ccCCe--eeEEecCCCcceE
Q 012064 324 TANTDVRIAPQVYKG-HRNCVT--VKGVNFFGPKCEYVVS--GSDCG------RIFIWK-KKGGE--LIRVIEADRHVVN 389 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~~~~~--i~~~~~~s~~g~~l~~--g~~dg------~v~iwd-~~~~~--~~~~~~~h~~~v~ 389 (471)
....+.. +..... ...+.| +|||+.|+. +..++ .|++|| ...++ ....+..+...+.
T Consensus 292 --------~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 292 --------CTKKHEDESEAWLHRQNEEPVF-SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (723)
T ss_dssp --------EEEEEEEECSSCCCCCCCCCEE-CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred --------ceEEEEeccCCEEeccCCCceE-cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence 1122221 112100 126677 999997775 44566 577777 34444 1455554444444
Q ss_pred E-EEEcCCCCEEEEeecC---CcEEEecCCC
Q 012064 390 C-IEPHPHSTVLASSGIE---SDIKILTPNA 416 (471)
Q Consensus 390 ~-~~~s~~~~~l~s~~~d---g~i~iw~~~~ 416 (471)
. ++|+|||+.|+..+.+ +.+++|++..
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 4 7999999988766554 7899999864
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=1.3e-23 Score=191.07 Aligned_cols=288 Identities=9% Similarity=0.005 Sum_probs=197.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecccc-ccEEEEEEcCCCCEE-EEec
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDIL-ISGS 80 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~s~~g~~l-~s~~ 80 (471)
.+++++++.++++++.+++|++||..+++.+ +.+..+. ..+..++|+|+|+++ +++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------~~~~~~~~~~~~~~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY---------------------KSCVMPDKFGPGTAMMAPDNRTAYVLNN 62 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE---------------------EEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE---------------------EEEecCCCCCCceeEECCCCCEEEEEeC
Confidence 4678889999999999999999999988766 3444332 257789999999865 4556
Q ss_pred CCCeEEEEECCCCceEEEeecCC-----CcceeEEEEecCCCCeEEEEEeCC------------CeEEEEeccccCccee
Q 012064 81 DDRRVILWDWKTERVKLSFHSGH-----NDNVFQAKIMPFTDDRSIVTCAAD------------GQVRHAQILERGGVET 143 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~ 143 (471)
.++.|.+||+.+++....+...+ ...+.+++|+| +++++++++.+ +.|.+||+.+++....
T Consensus 63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 78999999999998877664333 23478899999 99999988865 8999999987544332
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc--------------CcceeeeeeEEE
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------------RNYMTVVNLNAI 209 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~ 209 (471)
.....+...+.+++|+|++. + ++++. .|.+||+++++....+........ ...........+
T Consensus 141 ~~~~~~~~~~~~~~~s~dg~-l-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 141 VRTFPMPRQVYLMRAADDGS-L-YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp SEEEECCSSCCCEEECTTSC-E-EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred eeeccCCCcccceeECCCCc-E-EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 11223444688899999995 4 44443 499999999887665543210000 000011134556
Q ss_pred EEcCCCC----------ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeEEE
Q 012064 210 AIDPRNA----------NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVS 278 (471)
Q Consensus 210 ~~~p~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 278 (471)
++++++. .++......+.+++|++.. ....+..++|+| +++++++
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------------------------LTELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE------------------------CSSCEEEEEECSSCTTEEEE
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEeccccc------------------------CCCcceeeEecCCCCCEEEE
Confidence 7776521 1122333445555555422 234578899999 9999888
Q ss_pred eeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEE
Q 012064 279 YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (471)
Q Consensus 279 ~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l 358 (471)
+ ++.|++||+.++ .....+..... +.+++| +|+|++|
T Consensus 273 ~-~~~v~~~d~~~~--------------------------------------~~~~~~~~~~~---~~~~~~-s~dg~~l 309 (349)
T 1jmx_B 273 V-LNRLAKYDLKQR--------------------------------------KLIKAANLDHT---YYCVAF-DKKGDKL 309 (349)
T ss_dssp E-ESEEEEEETTTT--------------------------------------EEEEEEECSSC---CCEEEE-CSSSSCE
T ss_pred E-cCeEEEEECccC--------------------------------------eEEEEEcCCCC---ccceEE-CCCCCEE
Confidence 8 789999998764 22223332222 567888 9999999
Q ss_pred EEeeCCCeEEEEEccCCeeeEEecCC
Q 012064 359 VSGSDCGRIFIWKKKGGELIRVIEAD 384 (471)
Q Consensus 359 ~~g~~dg~v~iwd~~~~~~~~~~~~h 384 (471)
++++.++.|++||+.+++.+..+..+
T Consensus 310 ~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEecCCCeEEEEeccccceeeeeecC
Confidence 88888999999999999988877654
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.5e-23 Score=190.53 Aligned_cols=287 Identities=10% Similarity=0.098 Sum_probs=182.9
Q ss_pred CCeEEEEECC--CCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC---CCeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 82 DRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 82 d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
++.|.+|+++ +++........+......++|+| +++ |++++. ++.|.+|++.++.......+..+...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 4567777654 45543322234556778899999 999 555554 689999999765543333345567778899
Q ss_pred EEccCCCcEEEEEe-cCCeEEEEeccCCccceeeeecccCCcC--cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 012064 157 AIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (471)
Q Consensus 157 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (471)
+|+|+++. +++++ .++.+.+||+........+......... .......+.+++|+|++ +++++...++.|++|++
T Consensus 92 a~spdg~~-l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 92 AVDEARQL-VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEETTTTE-EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEE
T ss_pred EECCCCCE-EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEE
Confidence 99999964 45555 7899999999643222222111100000 00022347889999995 57777778899999999
Q ss_pred C-CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 234 R-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
. .+++... .............++|+|||++++..+ ++.+.+|++......
T Consensus 170 ~~~g~~~~~------------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~--------------- 222 (347)
T 3hfq_A 170 SDAGQLSEQ------------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA--------------- 222 (347)
T ss_dssp CTTSCEEEE------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE---------------
T ss_pred CCCCcEEEe------------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc---------------
Confidence 8 3321100 000111123567899999999776654 558999998641000
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCC----ceeEeeeeeeeCCCCcEEE-EeeCCCeEEEEEccC---CeeeEEec
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHR----NCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG---GELIRVIE 382 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~s~~g~~l~-~g~~dg~v~iwd~~~---~~~~~~~~ 382 (471)
......+.... ....+..++| +|||++|+ +...++.|.+|++.. .+.+..+.
T Consensus 223 -------------------~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~ 282 (347)
T 3hfq_A 223 -------------------FTQLGIVKTIPADYTAHNGAAAIRL-SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS 282 (347)
T ss_dssp -------------------EEEEEEEESSCTTCCSCCEEEEEEE-CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred -------------------eEEeeeeeecCCCCCCCCcceeEEE-CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence 00011111111 0123778898 99999885 455689999999962 25556666
Q ss_pred CCCcceEEEEEcCCCCEEEEeec-CCcEEEe--cCCCCCCc
Q 012064 383 ADRHVVNCIEPHPHSTVLASSGI-ESDIKIL--TPNAADRA 420 (471)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw--~~~~~~~~ 420 (471)
.+...+..++|+|||++|++++. ++.|.+| |..+++..
T Consensus 283 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 283 TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 66677899999999998888775 4899999 55556554
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=216.37 Aligned_cols=328 Identities=8% Similarity=-0.057 Sum_probs=214.6
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccc---cEEEEEEcCCCCEEEEe
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG 79 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~s~~g~~l~s~ 79 (471)
++.++|++++++++ .|++|++||..+|+.. ..+.+|.. .+.+++|||||++|+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------~~~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------TILSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------EEECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------EEEccccccccceeeEEECCCCCeEEEE
Confidence 46788999666555 6999999999988765 34444544 38999999999999988
Q ss_pred cC---------CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee
Q 012064 80 SD---------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 80 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
+. ++.|++||+.+++.+... .....+..++|+| ||+.|+++. ++.|++|++.+++.... ...++.
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~ 151 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRE 151 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBT
T ss_pred ecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCc
Confidence 76 789999999988762111 1135688999999 999999986 78999999987765432 112222
Q ss_pred eeE-----------------EEEEEccCCCcEEEEEecCC----------------------------------eEEEEe
Q 012064 151 GRA-----------------HKLAIEPGSPHVFYTCGEDG----------------------------------LVQHFD 179 (471)
Q Consensus 151 ~~v-----------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd 179 (471)
..+ .+++|+|||+ .|+.++.|. .|++||
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 222 4899999995 566665442 788999
Q ss_pred ccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC----CeEEEEE----cCCCccCCCCCCCCCCCcC
Q 012064 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYD----IRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~ 251 (471)
+.+++....+.........+ +...+..++|+|| +.++++.... ..|++|| ..+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------------ 295 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIAS--SDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCP------------ 295 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHT--SCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECC------------
T ss_pred CCCCCccceeEccCCccCCC--CcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceE------------
Confidence 98876531111110000001 4456899999999 6777664432 2488899 6665422
Q ss_pred CCCccc----CCCccceE-----EEEEcCCCCeEEE--ee-CC--cEEEEecCCCCCCCCCCCCCccccccccccCCCCC
Q 012064 252 CPPNLI----GDEQVGIT-----GLAFSDQSELLVS--YN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (471)
Q Consensus 252 ~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~-~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (471)
.+. ..+...+. .+.|+|||+.++. .. ++ .+++|++.++.
T Consensus 296 ---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~------------------------ 348 (719)
T 1z68_A 296 ---KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN------------------------ 348 (719)
T ss_dssp ---GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT------------------------
T ss_pred ---EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc------------------------
Confidence 111 23344444 6789999996654 32 33 57788876531
Q ss_pred CccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-----CCeEEEEEccC--Ce-eeEEec----CCC
Q 012064 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-----CGRIFIWKKKG--GE-LIRVIE----ADR 385 (471)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-----dg~v~iwd~~~--~~-~~~~~~----~h~ 385 (471)
...+..+... +..+.+ . +++.|+..+. ++..++|.+.. +. ....+. +|.
T Consensus 349 ---------------~~~lt~~~~~--v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~ 409 (719)
T 1z68_A 349 ---------------AIQITSGKWE--AINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER 409 (719)
T ss_dssp ---------------CEECSCSSSC--EEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred ---------------eEecccCceE--EEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence 2223333322 566677 4 6766665544 47888888754 32 123333 266
Q ss_pred cceEEEEEcCCCCEEEE-eecC--CcEEEecCCCCCCc
Q 012064 386 HVVNCIEPHPHSTVLAS-SGIE--SDIKILTPNAADRA 420 (471)
Q Consensus 386 ~~v~~~~~s~~~~~l~s-~~~d--g~i~iw~~~~~~~~ 420 (471)
..+..+.|+|++++++. ++.+ ..+.+|++.+++..
T Consensus 410 ~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 410 CQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp BCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 67889999999987664 4333 46889998877643
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=7.5e-23 Score=185.86 Aligned_cols=263 Identities=9% Similarity=0.078 Sum_probs=169.8
Q ss_pred cccccEEEEEEcCCCCEEEEecC---CCeEEEEECCCCce--EEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEE
Q 012064 59 KHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRH 132 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i 132 (471)
.+...+..++|+|||+ |++++. ++.|.+|++.+++. +..+ ..+...+..++|+| ++++|++++ .++.+.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~sp--dg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDE--ARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEET--TTTEEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECC--CCCEEEEEeCCCCEEEE
Confidence 3556678899999999 554443 68999999977663 2222 34677889999999 999888887 6799999
Q ss_pred EeccccCccee-eEeec---------eeeeEEEEEEccCCCcEEEEEecCCeEEEEecc-CCccceeeeecccCCcCcce
Q 012064 133 AQILERGGVET-KLLGK---------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYM 201 (471)
Q Consensus 133 wd~~~~~~~~~-~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 201 (471)
|++........ ..+.. +...+.+++|+|+++ ++++...++.|++||+. +++........ ..
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~------ 184 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT-ME------ 184 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE-CC------
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE-cC------
Confidence 99964322221 11211 112488899999996 77777778999999998 44432221111 00
Q ss_pred eeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe
Q 012064 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
....+..++|+|++..++++...++.+.+|++.. ++........ . ..........+..++|+|+|++|+.+
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~------~-~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK------T-IPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE------S-SCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee------e-cCCCCCCCCcceeEEECCCCCEEEEE
Confidence 1124678999999433555567789999999874 2211000000 0 00000112458899999999987544
Q ss_pred -e-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcE
Q 012064 280 -N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (471)
Q Consensus 280 -~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~ 357 (471)
. ++.|.+|++..... ......+..+... +..++| +|||++
T Consensus 258 ~~~~~~v~v~~~~~~g~-----------------------------------~~~~~~~~~~~~~--~~~~~~-spdg~~ 299 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGH-----------------------------------LTLIQQISTEGDF--PRDFDL-DPTEAF 299 (347)
T ss_dssp EETTTEEEEEEECGGGC-----------------------------------EEEEEEEECSSSC--CCEEEE-CTTSSE
T ss_pred eCCCCEEEEEEECCCCc-----------------------------------EEEeEEEecCCCC--cCeEEE-CCCCCE
Confidence 3 56899999863100 1223334433332 678888 999999
Q ss_pred EEEeeCC-CeEEEEE--ccCCeee
Q 012064 358 VVSGSDC-GRIFIWK--KKGGELI 378 (471)
Q Consensus 358 l~~g~~d-g~v~iwd--~~~~~~~ 378 (471)
|++++.+ +.|.+|+ ..++++.
T Consensus 300 l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8887754 8999994 4556554
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.9e-23 Score=189.08 Aligned_cols=270 Identities=8% Similarity=-0.008 Sum_probs=192.6
Q ss_pred CCCCCCCcEEEEecC-------CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEE
Q 012064 4 ASNNNNNKRARTSVD-------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL 76 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l 76 (471)
++++|+++++++++. ++.|.+||.++++.. +.+.. ...+..++|+|+|+++
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---------------------~~~~~-~~~~~~~~~s~dg~~l 103 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---------------------QAIHN-DLKPFGATINNTTQTL 103 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---------------------EEEEE-SSCCCSEEEETTTTEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---------------------EEEec-CCCcceEEECCCCCEE
Confidence 567899988887763 579999999988866 23332 3446789999999855
Q ss_pred -EEecCCCeEEEEECCCCceEEEeecCCCc--------ceeEEEEecCCCCeEEEEEe--CCCeEEEEeccccCcceeeE
Q 012064 77 -ISGSDDRRVILWDWKTERVKLSFHSGHND--------NVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKL 145 (471)
Q Consensus 77 -~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~ 145 (471)
+++..++.|.+||..+++.+..+..++.. .+.+++|+| +++++++++ .++.|.+||..+++....
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~-- 179 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTA-- 179 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEE--
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEE--
Confidence 45566799999999999987777432221 268899999 998877766 478899999987765543
Q ss_pred eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
+..+...+.+++|+|+++ .+++++.++.|.+||+++++....+...... +...+..++|+|++..++++...+
T Consensus 180 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNKILSRKKLLDDG------KEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp ECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTEEEEEEECCCSS------SCCCEEEEEEETTTTEEEEEESSS
T ss_pred ecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCeEEEEEEcCCCC------CCcccceEEECCCCCEEEEEeCCC
Confidence 443455578899999995 6777888999999999999877666542110 223577899999954444455556
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCc
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPV 303 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~ 303 (471)
+.|.+||..+++....... . . ...++|+|+|++++.+. ++.|.+||..++
T Consensus 253 ~~v~~~d~~~~~~~~~~~~--------------~-~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----------- 304 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAA--------------P-E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY----------- 304 (353)
T ss_dssp SEEEEEETTTCCEEEEEEC--------------S-S--CCCEEEETTTTEEEEEETTTTEEEEEETTTT-----------
T ss_pred CEEEEEECCCCcEEEEEEc--------------C-C--CceEEECCCCCEEEEEECCCCeEEEEECCCC-----------
Confidence 9999999988764322111 1 1 14689999999665554 568999998764
Q ss_pred cccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC
Q 012064 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg 365 (471)
.....+.... .+.+++| +|+|++|+.+..++
T Consensus 305 ---------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 305 ---------------------------KVVKTFDTPT---HPNSLAL-SADGKTLYVSVKQK 335 (353)
T ss_dssp ---------------------------EEEEEEECCS---EEEEEEE-CTTSCEEEEEEECC
T ss_pred ---------------------------eEEEEEecCC---CCCeEEE-cCCCCEEEEEEccc
Confidence 2233333332 2678888 99999887766553
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=7.8e-23 Score=185.89 Aligned_cols=296 Identities=14% Similarity=0.103 Sum_probs=187.6
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccCcceee
Q 012064 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETK 144 (471)
Q Consensus 66 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~ 144 (471)
.+++++++.++++++.++.|.+||..+++.+..+..+....+..++|+| ++++++ +...++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 3567888999999999999999999999887777433323678999999 998655 5556899999999877655432
Q ss_pred Eeece----eeeEEEEEEccCCCcEEEEEecC------------CeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 145 LLGKH----QGRAHKLAIEPGSPHVFYTCGED------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 145 ~~~~~----~~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
..... ...+..++|+|+++ .+++++.+ +.|.+||+++++......... ....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~ 152 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYL 152 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCC
T ss_pred EcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--------CCCcccc
Confidence 22111 33478899999995 56666654 899999999865443322111 2225788
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCc-C-CC-------CcccCCCccceEEEEEcCCCCeEEEe
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY-F-CP-------PNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
++|+|++ . +++++. .|++||..+++............. . .+ .............+++++++......
T Consensus 153 ~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 153 MRAADDG-S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EEECTTS-C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred eeECCCC-c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 9999994 5 444443 499999988765433222110000 0 00 00000001134456677655322111
Q ss_pred eCC--cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCC-CCc
Q 012064 280 NDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCE 356 (471)
Q Consensus 280 ~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~g~ 356 (471)
.++ .+..++..++. .....+..+.. .+..+++ +| +|+
T Consensus 229 ~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~--~~~~~~~-sp~dg~ 268 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGK-------------------------------------THTQEFADLTE--LYFTGLR-SPKDPN 268 (349)
T ss_dssp CEEEEEEEEEETTTCC-------------------------------------EEEEEEEECSS--CEEEEEE-CSSCTT
T ss_pred cccceeEEEEeccCCc-------------------------------------EEecccccCCC--cceeeEe-cCCCCC
Confidence 111 12223433321 00011111222 2677888 99 999
Q ss_pred EEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 357 ~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++||+.+++.
T Consensus 269 ~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 269 QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 99988 889999999999988777643 4578999999999888888899999999988765
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.92 E-value=7.4e-23 Score=188.97 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=191.8
Q ss_pred EEeccccccEEE-----EEEcCCCCEEEEecC-CC--eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 55 AKLDKHRGCVNT-----VSFNTDGDILISGSD-DR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 55 ~~l~~h~~~V~~-----~~~s~~g~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
..+..|...... .+|||||++|+.++. ++ .|.+||+.+++.. .+..++...+..+.|+| |++.|+.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~sp--dg~~l~~~~~ 100 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSP--DDDALFYVKD 100 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCSSCBCSSSCEECT--TSSEEEEEET
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeCCCCCccceEEcC--CCCEEEEEeC
Confidence 466667666665 889999999998887 66 5888999888764 44356666666788999 9999999999
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEE--EEEccCCCcEEEEE----------------------ecCCeEEEEeccC
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHK--LAIEPGSPHVFYTC----------------------GEDGLVQHFDLRT 182 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~----------------------~~dg~i~iwd~~~ 182 (471)
++.+++||+.+++.... ...+...+.. ..++|++. .++.. ..+..|.+||+.+
T Consensus 101 ~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp TTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred CCeEEEEECCCCcceee--eechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 99999999988765543 3333333433 34588885 44422 2346899999999
Q ss_pred CccceeeeecccCCcCcceeeeeeEEEEEcC-CCCceEEEEeCC------CeEEEEEcCCCccCCCCCCCCCCCcCCCCc
Q 012064 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (471)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (471)
++...... +...+..++|+| + +..|+....+ ..|.++|....+. ..
T Consensus 178 g~~~~l~~-----------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------------~~ 230 (388)
T 3pe7_A 178 GESTVILQ-----------ENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARMWLINEDGTNM---------------RK 230 (388)
T ss_dssp CCEEEEEE-----------ESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSEEEEETTSCCC---------------EE
T ss_pred CceEEeec-----------CCccccccEECCCC-CCEEEEEEecCCCCCcceEEEEeCCCCce---------------EE
Confidence 87554433 333578999999 8 5677665543 3688888765431 11
Q ss_pred ccCCCc-cceEEEEEcCCCCeEEEee--CC----cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcc
Q 012064 256 LIGDEQ-VGITGLAFSDQSELLVSYN--DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (471)
Q Consensus 256 ~~~~~~-~~i~~~~~~~~~~~l~~~~--~~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (471)
+..... ..+...+|+|||+.|+..+ ++ .|++||+.+++.
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---------------------------------- 276 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN---------------------------------- 276 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE----------------------------------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce----------------------------------
Confidence 112221 3577889999999776544 22 299999987531
Q ss_pred cccCCeeeecCCcee-EeeeeeeeCCCCcEEEEe---------eCCCeEEEEEccCCeeeEEecCCCc-----------c
Q 012064 329 VRIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSG---------SDCGRIFIWKKKGGELIRVIEADRH-----------V 387 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~-~i~~~~~~s~~g~~l~~g---------~~dg~v~iwd~~~~~~~~~~~~h~~-----------~ 387 (471)
..+..+.++.... ......| +|||+.|+.. ..+..|++||+.+++. ..+..|.. .
T Consensus 277 --~~l~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~ 352 (388)
T 3pe7_A 277 --RQLTSMPACSHLMSNYDGSLM-VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVT 352 (388)
T ss_dssp --EEEEEECCEEEEEECTTSSEE-EEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTT
T ss_pred --EEEEcCCCceeeeecCCCCeE-ccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccC
Confidence 1111222210000 0122356 9999988754 4567899999988765 44555554 5
Q ss_pred eEEEEEcCCCCEEEEee-cCCcEEEecCC
Q 012064 388 VNCIEPHPHSTVLASSG-IESDIKILTPN 415 (471)
Q Consensus 388 v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 415 (471)
+..++|+|||+.|+.++ .+|...||.++
T Consensus 353 ~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 353 HPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 78899999999777665 46776666554
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=9.7e-23 Score=189.59 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=171.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE----E
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI----S 78 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~----s 78 (471)
.+++++++.++++|+.|| +++|+...-.... .................+ .|.+.|.+++|+|+|++|+ +
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN-----KPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCC-----CTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhc-----ccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 355778888999999888 8999875321100 000000111111122222 4678899999999999999 8
Q ss_pred ecCCCeEEEEECCCC--------ceE--EEeecCCCcceeEEEEecCCC-CeEEEEEeCCCeEEEEeccccCcceeeEee
Q 012064 79 GSDDRRVILWDWKTE--------RVK--LSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLG 147 (471)
Q Consensus 79 ~~~d~~i~iwd~~~~--------~~~--~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 147 (471)
|+.|+.|+|||+.++ +.+ .....+|...|.+++|+| + +.+|++++.||+|++||++++.... ...
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~~~~~~--~~~ 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTETVKVC--ATL 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESSSEEEE--EEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCCCccee--ecc
Confidence 899999999998765 221 233467999999999999 7 7899999999999999998774432 255
Q ss_pred ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE-EeCCC
Q 012064 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDE 226 (471)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg 226 (471)
+|...|.+++|+|++ +.|++|+.||.|++||++ ++....+..+... ...+...+.+++|+++ ..++++ +..+|
T Consensus 190 ~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~---~~~~~~~v~~v~w~~~-~~~l~~~~~~dg 263 (434)
T 2oit_A 190 PSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY---ESDHPVRVLDVLWIGT-YVFAIVYAAADG 263 (434)
T ss_dssp CGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTC---CTTSCEEEEEEEEEET-TEEEEEEEETTC
T ss_pred CCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCccc---CCCCceeEEEEEEecC-ceEEEEEccCCC
Confidence 688899999999998 578999999999999998 5444444322111 0013447899999997 445433 33443
Q ss_pred ------eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecC
Q 012064 227 ------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQD 290 (471)
Q Consensus 227 ------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~ 290 (471)
.+++|++++.+......+... ..+.......+.+...+.+-++.+++++++ ...|.++...
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNF---MEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEEC---CCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ccCCCCceEEEEeccCCCCCCcceEec---ccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 389999987532211110000 000000011222233455557777776665 3356666543
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=2.9e-21 Score=176.35 Aligned_cols=302 Identities=11% Similarity=0.067 Sum_probs=184.9
Q ss_pred CCEEEEec----CCCeEEEEEC--CCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC----CeEEEEecccc--Cc
Q 012064 73 GDILISGS----DDRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER--GG 140 (471)
Q Consensus 73 g~~l~s~~----~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~--~~ 140 (471)
..+++.|+ .++.|.+|++ .+++....... +......++|+| ++++|++++.+ +.+.+|++... +.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 34555553 3568999876 45654333322 667788899999 99999998875 79999998764 22
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeee----cccCCcCcceeeeeeEEEEEcCCCC
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC----RPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
........+......+++ ++..++++...++.+.+|++........... ..............+.+++|+|++.
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 222223334455677777 6655555555789999999976543322111 0000000011233468899999943
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcC-CCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF-CPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGL 293 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~ 293 (471)
.++++...++.|++|++.......... ..... ...............++|+|+|+++++++ ++.|.+|++.++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKE---KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCC---CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCccccc---ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 345555568899999987543100000 00000 00011112234568899999999877666 5689999987531
Q ss_pred CCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee---cCCceeEeeeeeeeCCCCcEEEEeeC--CCeEE
Q 012064 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK---GHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIF 368 (471)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~s~~g~~l~~g~~--dg~v~ 368 (471)
. .....+. .+.. ....++| +|||++|+++.. ++.|.
T Consensus 245 ~------------------------------------~~~~~~~~~~~~~~--~~~~i~~-spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 245 L------------------------------------DEIQTVAADTVNAQ--GSGDIHL-SPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp E------------------------------------EEEEEEESCSSCCC--CEEEEEE-CTTSSEEEEEECSSSCEEE
T ss_pred e------------------------------------EEeEEEecCCCCCC--CcccEEE-CCCCCEEEEECCCCCCEEE
Confidence 1 0111111 1111 1568888 999999877665 48999
Q ss_pred EEEcc--CCe--eeEEecCCCcceEEEEEcCCCCEEEEee-cCCcEEEec--CCCCCCccc
Q 012064 369 IWKKK--GGE--LIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILT--PNAADRATL 422 (471)
Q Consensus 369 iwd~~--~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~--~~~~~~~~~ 422 (471)
+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|+ ..+++...+
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 99985 444 4444544 45788999999999888887 678999964 456655433
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=2.5e-21 Score=176.76 Aligned_cols=306 Identities=10% Similarity=0.070 Sum_probs=190.6
Q ss_pred CCCcEEEEec----CCCeEEEEEcc--cCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 8 NNNKRARTSV----DKALVDVWLRE--LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 8 ~~~~~l~~~~----~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+...++++|+ .++.|.+|+++ +|++. ..... |...+..++|+|||++|++++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~-------------------~~~~~--~~~~p~~l~~spdg~~l~~~~~ 69 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESL-------------------PLSDA--EVANPSYLIPSADGKFVYSVNE 69 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEE-------------------EEEEE--ECSCCCSEEECTTSSEEEEEEC
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEE-------------------Eeecc--cCCCCceEEECCCCCEEEEEEc
Confidence 4455666763 46789999775 44433 11222 6677888999999999999887
Q ss_pred C----CeEEEEECCC--Cce--EEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEEEeccccCcceee-Eeec---
Q 012064 82 D----RRVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK-LLGK--- 148 (471)
Q Consensus 82 d----~~i~iwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~~~--- 148 (471)
+ +.|.+|++.. ++. +... ..+......+++ +++++++++ .++.+.+|++......... ....
T Consensus 70 ~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 144 (361)
T 3scy_A 70 FSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG 144 (361)
T ss_dssp CSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC
T ss_pred cCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC
Confidence 5 7999998865 432 2222 234445556666 566666555 6889999999754433211 0111
Q ss_pred --------eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCcc------ceee---eecccCCcCcceeeeeeEEEEE
Q 012064 149 --------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA------TELF---TCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 149 --------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+...+.+++|+|+++.++++...++.|.+|++..... .... ...... ....+..++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~ 218 (361)
T 3scy_A 145 SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA------PGSGPRHLIF 218 (361)
T ss_dssp CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC------TTCCEEEEEE
T ss_pred CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC------CCCCCeEEEE
Confidence 1223588999999965666666689999999876542 1111 000000 2234678999
Q ss_pred cCCCCceEEEEe-CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C--CcEEEE
Q 012064 212 DPRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--EFIYLF 287 (471)
Q Consensus 212 ~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--~~i~i~ 287 (471)
+|+ ++++++++ .++.|.+|++.+++...... ......+......++|+|||++|+++. . +.+.+|
T Consensus 219 spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~----------~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 219 NSD-GKFAYLINEIGGTVIAFRYADGMLDEIQT----------VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTT-SSEEEEEETTTCEEEEEEEETTEEEEEEE----------EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred cCC-CCEEEEEcCCCCeEEEEEecCCceEEeEE----------EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 999 56665555 68999999998654211100 001112234468999999999886655 4 579999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-CCCe
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGR 366 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-~dg~ 366 (471)
++...... ...+..+.. .. .+..++| +|||++|++++ .++.
T Consensus 288 ~~~~~~g~----------------------------------~~~~~~~~~-g~--~~~~~~~-spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 288 KVDETNGT----------------------------------LTKVGYQLT-GI--HPRNFII-TPNGKYLLVACRDTNV 329 (361)
T ss_dssp EECTTTCC----------------------------------EEEEEEEEC-SS--CCCEEEE-CTTSCEEEEEETTTTE
T ss_pred EEcCCCCc----------------------------------EEEeeEecC-CC--CCceEEE-CCCCCEEEEEECCCCC
Confidence 98621000 111222222 11 2678888 99999998887 5789
Q ss_pred EEEEEc--cCCeeeEEec-CCCcceEEEEEc
Q 012064 367 IFIWKK--KGGELIRVIE-ADRHVVNCIEPH 394 (471)
Q Consensus 367 v~iwd~--~~~~~~~~~~-~h~~~v~~~~~s 394 (471)
|.+|++ .++++..... .+...+.|+.|.
T Consensus 330 v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 330 IQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999654 5666554332 234568888885
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=2.3e-21 Score=193.69 Aligned_cols=330 Identities=8% Similarity=-0.012 Sum_probs=203.8
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecccccc-----EEEEEEcCCCCEEE
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-----VNTVSFNTDGDILI 77 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~~~~s~~g~~l~ 77 (471)
++.++|++++++++ ||+|++||+.+|+.. ..+.+|... ...++|||||++|+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~ 77 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------VFLENSTFDEFGHSINDYSISPDGQFIL 77 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------EEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------EEEechhhhhhcccccceEECCCCCEEE
Confidence 46789999999887 999999999998865 345555432 34578999999999
Q ss_pred EecCC---------CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec
Q 012064 78 SGSDD---------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK 148 (471)
Q Consensus 78 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 148 (471)
.++.+ +.+.+||+.+++.. .+ ..|...+..++||| ||+.|+.+. ++.|++|++.+++.... ...+
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SP--dG~~la~~~-~~~i~~~~~~~~~~~~l-t~~g 151 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPNLPSYRI-TWTG 151 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CSCC
T ss_pred EEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECC--CCCEEEEEE-CCeEEEEECCCCceEEE-cCCC
Confidence 98875 56779999998853 33 56778899999999 999999885 68999999987764331 1222
Q ss_pred eeeeE-----------------EEEEEccCCCcEEEEEec-CC-----------------------------------eE
Q 012064 149 HQGRA-----------------HKLAIEPGSPHVFYTCGE-DG-----------------------------------LV 175 (471)
Q Consensus 149 ~~~~v-----------------~~~~~~~~~~~~l~~~~~-dg-----------------------------------~i 175 (471)
+...+ ..+.|+|||+. |+..+. ++ .|
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l 230 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF 230 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEE
Confidence 22212 34899999965 454432 22 47
Q ss_pred EEEeccC---CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC----CCeEEEEEcCCCc----cCCCCCC
Q 012064 176 QHFDLRT---GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYK----WDGSTDF 244 (471)
Q Consensus 176 ~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~ 244 (471)
++||+.+ ++..............+ +...+..++|+|| +++++.... +..|++||+.+++ .....
T Consensus 231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~-- 305 (740)
T 4a5s_A 231 FVVNTDSLSSVTNATSIQITAPASMLI--GDHYLCDVTWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR-- 305 (740)
T ss_dssp EEEETTSCCSSSCCCEEEECCCHHHHT--SCEEEEEEEEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG--
T ss_pred EEEECCCCCCCCcceEEEecCCccCCC--CCeEEEEEEEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE--
Confidence 7788777 63211111111000000 3446889999999 565554432 3379999998765 11000
Q ss_pred CCCCCcCCCCcccCCCccce-----EEEEEcCCCCeEE-Eee--CC--cEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 245 GQPADYFCPPNLIGDEQVGI-----TGLAFSDQSELLV-SYN--DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~-~~~--~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
......+...+ ....|+|||+.|+ ..+ ++ .|++||..++.
T Consensus 306 ---------~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--------------------- 355 (740)
T 4a5s_A 306 ---------QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD--------------------- 355 (740)
T ss_dssp ---------CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---------------------
T ss_pred ---------EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---------------------
Confidence 00001122222 3578999999876 555 33 58999987642
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE-EeeC----CC--eEEEEEccCCeeeEEecC----
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSD----CG--RIFIWKKKGGELIRVIEA---- 383 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~-~g~~----dg--~v~iwd~~~~~~~~~~~~---- 383 (471)
...+...... +..+.. +|++.|+ +++. .+ .|+..++..++....+..
T Consensus 356 ------------------~~~lT~g~~~--v~~~~~--~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (740)
T 4a5s_A 356 ------------------CTFITKGTWE--VIGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNP 413 (740)
T ss_dssp ------------------CEESCCSSSC--EEEEEE--ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTST
T ss_pred ------------------eEecccCCEE--EEEEEE--EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCC
Confidence 1122222211 333332 3355444 4443 23 455555554443334432
Q ss_pred CCcceEEEEEcCCCCEEEEeecC---CcEEEecCCCCCC
Q 012064 384 DRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADR 419 (471)
Q Consensus 384 h~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~ 419 (471)
.......+.|+|++++++..... ..+.+++..+++.
T Consensus 414 ~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 23578899999999976644332 4677888776544
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=8.8e-23 Score=198.67 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=179.0
Q ss_pred CCCCCCCCcEEEEecC-CCeEEEEEcccCccccccccceecccccceeeeeeeEEecccc-ccEEEEEEcCCCCEEEEec
Q 012064 3 DASNNNNNKRARTSVD-KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~s~~g~~l~s~~ 80 (471)
+++++|||++||.++. ||+++||++++++.. .+..|. ..+..++|||| +++++++
T Consensus 26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----------------------~lt~~~~~~~~~~~~spd-~~l~~~~ 82 (582)
T 3o4h_A 26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----------------------KLNREPINSVLDPHYGVG-RVILVRD 82 (582)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTEEE----------------------ECCSSCCSEECEECTTCS-EEEEEEE
T ss_pred eeecCCCCCeEEEEEccCCceeEEEEcCCCcE----------------------eeecccccccccccCCCC-eEEEEec
Confidence 4678999999998887 999999999766543 445555 68999999999 7777766
Q ss_pred C---CCeEEEEECCC---CceEEEeecCCCcceeEEEEecCCCCe--EEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 81 D---DRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDR--SIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 81 ~---d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
. +....+|.+.. +.. ..+. .. ..+...+|+| +++ .+++++ ++.+.+||+.+++... +..+..
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~-~~l~-~~-~~~~~~~~s~--dg~~~~~~s~~-~~~~~l~d~~~g~~~~---l~~~~~- 152 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEE-QRLE-AV-KPMRILSGVD--TGEAVVFTGAT-EDRVALYALDGGGLRE---LARLPG- 152 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCC-EECT-TS-CSBEEEEEEE--CSSCEEEEEEC-SSCEEEEEEETTEEEE---EEEESS-
T ss_pred cCCCCcceEEEEEeccCCCcc-cccc-CC-CCceeeeeCC--CCCeEEEEecC-CCCceEEEccCCcEEE---eecCCC-
Confidence 4 45556655433 333 2432 22 2344668888 765 344444 4455699998775433 222333
Q ss_pred EEEEEEccCCCcEEEEEecC----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC--
Q 012064 153 AHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-- 226 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-- 226 (471)
.+++|+|||+ .+++++.+ +.|++||+.+++...... +...+..++|+|| +++|+++..++
T Consensus 153 -~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~~~~l~~-----------~~~~~~~~~~SpD-G~~l~~~~~~~~~ 218 (582)
T 3o4h_A 153 -FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGGLRVFDS-----------GEGSFSSASISPG-MKVTAGLETAREA 218 (582)
T ss_dssp -CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCCCEEECC-----------SSCEEEEEEECTT-SCEEEEEECSSCE
T ss_pred -ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCCceEeec-----------CCCccccceECCC-CCEEEEccCCCee
Confidence 7899999995 66766666 789999999887653221 3446799999999 67888888888
Q ss_pred eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEE--------EcCCCCeEEEee-CCcEEEEecCCCCCCCC
Q 012064 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA--------FSDQSELLVSYN-DEFIYLFTQDMGLGPNP 297 (471)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~ 297 (471)
.|++||+.+++.. ....+...+..++ |+|||+++++++ ++.+++|++ ++..
T Consensus 219 ~i~~~d~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~-- 278 (582)
T 3o4h_A 219 RLVTVDPRDGSVE----------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV-- 278 (582)
T ss_dssp EEEEECTTTCCEE----------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE--
T ss_pred EEEEEcCCCCcEE----------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee--
Confidence 8999999876532 2223333344444 999998777776 678999998 3110
Q ss_pred CCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCC---eEEEEEccC
Q 012064 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKG 374 (471)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg---~v~iwd~~~ 374 (471)
. .... .+.+++| + +++++++++.+. .+++||..+
T Consensus 279 ------------------------------------~---~~~~--~v~~~~~-s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 279 ------------------------------------E---APQG--NHGRVVL-W-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ------------------------------------C---CCSS--EEEEEEE-E-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ------------------------------------c---cCCC--ceEEEEe-c-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 0 1112 2778888 8 999999887774 477777643
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.90 E-value=3.4e-21 Score=174.96 Aligned_cols=308 Identities=12% Similarity=0.074 Sum_probs=203.5
Q ss_pred CCCcEEEEec------CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec-
Q 012064 8 NNNKRARTSV------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS- 80 (471)
Q Consensus 8 ~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~- 80 (471)
++++++++.. .|+.|.+||.++++.+ .++..+..+ .++|+|||++|++++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~---------------------~~i~~g~~p--~i~~spdg~~lyv~~~ 69 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFL---------------------GMVPTAFNG--HVQVSNDGKKIYTMTT 69 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEE---------------------EEEECCEEE--EEEECTTSSEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEE---------------------EEecCCCCC--ceEECCCCCEEEEEEe
Confidence 4667766643 4789999999988766 455556665 899999999999876
Q ss_pred ---------CCCeEEEEECCCCceEEEeecC-----CCcceeEEEEecCCCCeEEEEEeC--CCeEEEEeccccCcceee
Q 012064 81 ---------DDRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETK 144 (471)
Q Consensus 81 ---------~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~ 144 (471)
.++.|.+||..+++.+.++... +......++++| ||++|+++.. ++.|.+||+.+++.+...
T Consensus 70 ~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~ 147 (361)
T 2oiz_A 70 YHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVEDV 147 (361)
T ss_dssp EETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred cccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEEE
Confidence 2578999999998887776422 234567889999 9999998864 579999999877543220
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
+. .. ....+.+.|+++..+++.+.||.+.+|+++. ++............. .. ....+.++|+ +..++..+
T Consensus 148 -i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~----~~-~~~~~~~~~~-g~~~~~~~ 218 (361)
T 2oiz_A 148 -TA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV----KD-DPIFIAPALD-KDKAHFVS 218 (361)
T ss_dssp -GG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT----TT-SCBCSCCEEC-SSEEEEEB
T ss_pred -ec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC----CC-CceEEEeccc-CCEEEEEe
Confidence 11 11 1233567887767788999999999999875 443312110000000 00 0112233566 34555667
Q ss_pred CCCeEEEEEcCCCccCC--CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee------------CCcEEEEec
Q 012064 224 SDEYTRLYDIRKYKWDG--STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN------------DEFIYLFTQ 289 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------~~~i~i~d~ 289 (471)
.++.+.++|+....... ....... . .............++++|+++.++.+. .+.|.+||.
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~--~---~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLND--E---DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCH--H---HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred CCCeEEEEEecCCCceecccccccCc--c---ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 88999999987543110 0000000 0 000000001112368999988766543 237999998
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
.++ +.+..+..+. ..+++| +|||++|++++. +.|.+
T Consensus 294 ~t~--------------------------------------~~v~~i~~~~----p~~ia~-spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 294 KTK--------------------------------------QRVARIPGRD----ALSMTI-DQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTT--------------------------------------EEEEEEECTT----CCEEEE-ETTTTEEEEECS-SCEEE
T ss_pred CCC--------------------------------------cEEEEEecCC----eeEEEE-CCCCCEEEEeCC-CeEEE
Confidence 773 3445555554 578888 999999998887 99999
Q ss_pred EEccCC--eeeEEecCCCcceEEEEEcCCCC
Q 012064 370 WKKKGG--ELIRVIEADRHVVNCIEPHPHST 398 (471)
Q Consensus 370 wd~~~~--~~~~~~~~h~~~v~~~~~s~~~~ 398 (471)
||..++ +.+..+..+......++++|+|+
T Consensus 330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999 99999877777889999999985
No 161
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.4e-21 Score=173.19 Aligned_cols=226 Identities=12% Similarity=0.157 Sum_probs=161.6
Q ss_pred EeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCccee
Q 012064 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 124 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 202 (471)
.+.++.|++||+.+++... +..|...+.+++|+|+++ .+++++ ++.|++||+++ ++........ .
T Consensus 18 ~~~~~~i~~~d~~~~~~~~---~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~---------~ 83 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV---VWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGF---------A 83 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE---EEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTT---------C
T ss_pred CCcceeEEEEeCCCCceee---eccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecccc---------c
Confidence 4568899999998766442 556888999999999995 556655 88999999998 7655433211 2
Q ss_pred eeeeEEEEEcCCCCceEEEEe--CCCeEEEE--EcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEE-
Q 012064 203 VVNLNAIAIDPRNANLFAVAG--SDEYTRLY--DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV- 277 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 277 (471)
...+.+++|+|+ +.++++++ .++...+| +....+. ..... ...+..++|+|++++|+
T Consensus 84 ~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~~----------------~~~~~-~~~~~~~~~spdg~~l~~ 145 (297)
T 2ojh_A 84 TICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGTP----------------RLMTK-NLPSYWHGWSPDGKSFTY 145 (297)
T ss_dssp CCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCCC----------------EECCS-SSSEEEEEECTTSSEEEE
T ss_pred cccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCce----------------EEeec-CCCccceEECCCCCEEEE
Confidence 246788999999 67888877 33445555 4444321 11111 22378899999999877
Q ss_pred Eee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc
Q 012064 278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (471)
Q Consensus 278 ~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~ 356 (471)
++. ++.+.+|+++... .....+..+... +.++.| +|+|+
T Consensus 146 ~~~~~~~~~l~~~~~~~-------------------------------------~~~~~~~~~~~~--~~~~~~-s~dg~ 185 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDS-------------------------------------GVETRLTHGEGR--NDGPDY-SPDGR 185 (297)
T ss_dssp EEEETTEEEEEEEETTT-------------------------------------CCEEECCCSSSC--EEEEEE-CTTSS
T ss_pred EECCCCceEEEEEECCC-------------------------------------CcceEcccCCCc--cccceE-CCCCC
Confidence 444 6778888864310 112233334433 788898 99999
Q ss_pred EEEEee-CCCeEEEEEcc-CCeeeEEecCCCcceEEEEEcCCCCEEEEeecC-----------CcEEEecCCCCCCcc
Q 012064 357 YVVSGS-DCGRIFIWKKK-GGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-----------SDIKILTPNAADRAT 421 (471)
Q Consensus 357 ~l~~g~-~dg~v~iwd~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i~iw~~~~~~~~~ 421 (471)
+|+.++ .++.+++|++. .+.....+..|...+..++|+|++++|++++.+ +.|++|++.+++...
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET 263 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence 888765 58899999986 566677888888899999999999999888766 569999999877643
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=5.2e-22 Score=198.35 Aligned_cols=291 Identities=11% Similarity=0.044 Sum_probs=190.0
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCc---ceeEEEEecCCCCeEEEEEeC---------CCeEEEE
Q 012064 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAA---------DGQVRHA 133 (471)
Q Consensus 66 ~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~---------dg~i~iw 133 (471)
.++|+|||++++++ .|++|++||+.+++....+ ..|.. .+.+++|+| ||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence 67999999766654 6899999999998875444 44433 389999999 9999998876 6899999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC-cCccee-------eee
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYMT-------VVN 205 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-------~~~ 205 (471)
|+.+++......+ ...+..++|+|||+ .|+.+ .++.|++||+.+++............ ..++.. ...
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~-~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGS-KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred ECCCCccccceec---CcccccceECCCCC-EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 9988765211112 24578899999996 45555 47899999999887643321110000 000000 012
Q ss_pred eEEEEEcCCCCceEEEEeCCC----------------------------------eEEEEEcCCCccCCCCCCCCCCCcC
Q 012064 206 LNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQPADYF 251 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (471)
..+++|+|| +++|++++.|. .|++||+.+++......+
T Consensus 171 ~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~------- 242 (719)
T 1z68_A 171 KYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV------- 242 (719)
T ss_dssp SCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC-------
T ss_pred cccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc-------
Confidence 258999999 67888776542 788999987653100000
Q ss_pred CCCcccCCCccceEEEEEcCCCCeEEEee-CC----cEEEEe----cCCCCCCCCCCCCCccccccccccCCCCCCccCC
Q 012064 252 CPPNLIGDEQVGITGLAFSDQSELLVSYN-DE----FIYLFT----QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (471)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~----~i~i~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (471)
........+...+..++|+||++++++.. .+ .|++|| ..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~---------------------------- 294 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC---------------------------- 294 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC----------------------------
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce----------------------------
Confidence 00112234677899999999988777643 22 388888 655321
Q ss_pred CCCCcccccCCeee----ecCCceeEee-----eeeeeCCCCcEEEE--eeCCC--eEEEEEccCCeeeEEecCCCcceE
Q 012064 323 STANTDVRIAPQVY----KGHRNCVTVK-----GVNFFGPKCEYVVS--GSDCG--RIFIWKKKGGELIRVIEADRHVVN 389 (471)
Q Consensus 323 ~~~~~~~~~~~~~~----~~~~~~~~i~-----~~~~~s~~g~~l~~--g~~dg--~v~iwd~~~~~~~~~~~~h~~~v~ 389 (471)
...+ .++... +. .+.| +|||+.++. ...+| .|++||+.+++ ...+..+...+.
T Consensus 295 ----------~~~~~~~~~~~~~~--~~~~~~~~~~~-spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~ 360 (719)
T 1z68_A 295 ----------PKTQEHIEESRTGW--AGGFFVSTPVF-SYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI 360 (719)
T ss_dssp ----------CGGGEEEEECSSSC--SSSSSCCCCEE-CTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred ----------EEEEecccccCCce--EccccCCccEE-CCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence 1112 233333 33 5677 999996554 44444 67778887666 456666666788
Q ss_pred EEEEcCCCCEEEEeecC-----CcEEEecCCC
Q 012064 390 CIEPHPHSTVLASSGIE-----SDIKILTPNA 416 (471)
Q Consensus 390 ~~~~s~~~~~l~s~~~d-----g~i~iw~~~~ 416 (471)
.+.++ +++.|+..+.+ +..++|.+..
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 87777 77766665554 8889998753
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=7.1e-20 Score=167.19 Aligned_cols=262 Identities=9% Similarity=0.032 Sum_probs=166.4
Q ss_pred ccccEEEEEEcCCCCEEEEecCCCeEEEEECC-CCceEEEeecCCCcceeEEEEecCCCCeE--EEEEe-----------
Q 012064 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRS--IVTCA----------- 125 (471)
Q Consensus 60 h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~----------- 125 (471)
+...+..++|+|||++|++++.+ .|.+|++. +++..........+...+++|+| ++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC--CCCEEEEEEecCCcceecccee
Confidence 34467889999999999998887 99999997 77654332111112356689999 9995 44553
Q ss_pred --CCCeEEEEeccc-cCcceeeEee--ceeeeEEEEEEccCCCcEEEEEe-cCCeEEEEecc-CCccceeeeecccCCcC
Q 012064 126 --ADGQVRHAQILE-RGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLR-TGAATELFTCRPIDDRR 198 (471)
Q Consensus 126 --~dg~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~ 198 (471)
.+|.+.+|++.. ++........ .+...+.+++|+|+++. ++++. .++.|++||++ +++........ ...
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~-- 190 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSADLTANKLWTHRKLASGEVELVGSVD-APD-- 190 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSCEEEEEEEE-CSS--
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCC--
Confidence 689999999974 3332221111 23457899999999954 45544 46899999998 66543221110 000
Q ss_pred cceeeeeeEEEEEcCCCCceEEEEe-CCCeEEEEEcCC--CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe
Q 012064 199 NYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (471)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (471)
+...+..++|+|+ ++++++++ .++.+.+|++.. +++. .....+...|.+
T Consensus 191 ---~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~----------------------~~~~~~~~~~~~-- 242 (365)
T 1jof_A 191 ---PGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPV----------------------YTHHSFPLIPPG-- 242 (365)
T ss_dssp ---TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE----------------------EEEEEEESSCTT--
T ss_pred ---CCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEE----------------------EccceEEcCCCC--
Confidence 1234788899998 56666555 467888887753 1100 000001101100
Q ss_pred EEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc----eeEeeeee-e
Q 012064 276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN----CVTVKGVN-F 350 (471)
Q Consensus 276 l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~-~ 350 (471)
+.++.. ...+..++ |
T Consensus 243 ------------------------------------------------------------~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 243 ------------------------------------------------------------IPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp ------------------------------------------------------------CCCBCTTTSSBSEEEEEEEE
T ss_pred ------------------------------------------------------------cCCcccccccccccccEEEE
Confidence 001110 01267888 7
Q ss_pred eCCCCcEEEEeeCC-C-----eEEEEEcc-CCeeeE---EecCCCcceEEEEEcC---CCCEEEEeecC-CcEEEecCCC
Q 012064 351 FGPKCEYVVSGSDC-G-----RIFIWKKK-GGELIR---VIEADRHVVNCIEPHP---HSTVLASSGIE-SDIKILTPNA 416 (471)
Q Consensus 351 ~s~~g~~l~~g~~d-g-----~v~iwd~~-~~~~~~---~~~~h~~~v~~~~~s~---~~~~l~s~~~d-g~i~iw~~~~ 416 (471)
+|||++|++++.+ . .|.+|++. +++... ....+...+..++|+| ||++|++++.+ +.|.+|+++.
T Consensus 263 -spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 263 -TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp -CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred -CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 9999998876543 2 89999996 566543 2334555677899999 89999988764 8999999876
Q ss_pred C
Q 012064 417 A 417 (471)
Q Consensus 417 ~ 417 (471)
.
T Consensus 342 ~ 342 (365)
T 1jof_A 342 E 342 (365)
T ss_dssp T
T ss_pred h
Confidence 5
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=2.1e-20 Score=173.80 Aligned_cols=166 Identities=10% Similarity=-0.001 Sum_probs=125.6
Q ss_pred CCCCCCCCcEEE----EecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC-CCEEE
Q 012064 3 DASNNNNNKRAR----TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILI 77 (471)
Q Consensus 3 ~~~~~~~~~~l~----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~-g~~l~ 77 (471)
+++|+|++++|+ +|+.|++|+|||++++.... ......+...+.+.+|.+.|.+++|+|+ +.+|+
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~----------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA----------KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT----------CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC----------cCCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence 467899999999 88999999999998651000 0000112233567789999999999998 79999
Q ss_pred EecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEee-------cee
Q 012064 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-------KHQ 150 (471)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~ 150 (471)
+++.||+|++||+.++...... .+|...|.+++|+| ++++|++++.||.|++||++ ++.... +. .|.
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~ 240 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKV--IPCPPFYESDHP 240 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEE--ECCCTTCCTTSC
T ss_pred EEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-Cccccc--ccCCcccCCCCc
Confidence 9999999999999988765554 57899999999999 99999999999999999987 332222 22 234
Q ss_pred eeEEEEEEccCCCcEEEEEecCC------eEEEEeccCCc
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDG------LVQHFDLRTGA 184 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~ 184 (471)
..+.+++|++++..+++.+..+| .+++|+++..+
T Consensus 241 ~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 241 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 58999999998743323344443 38999998753
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=3.8e-20 Score=170.80 Aligned_cols=240 Identities=11% Similarity=0.008 Sum_probs=156.7
Q ss_pred CCCCCCCCcEEEEecC-CC--eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 3 DASNNNNNKRARTSVD-KA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
..+++|+|++|+.++. +| .|.+||+++++.. +...+|...+..++|+|||+.|+.+
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------------------~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---------------------QLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------------ECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------------EeeeCCCCCccceEEcCCCCEEEEE
Confidence 3679999999988887 67 4888898877765 3344566666677899999999999
Q ss_pred cCCCeEEEEECCCCceEEEeecCCCcceeEEEE--ecCCCCeEEEEE----------------------eCCCeEEEEec
Q 012064 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKI--MPFTDDRSIVTC----------------------AADGQVRHAQI 135 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~----------------------~~dg~i~iwd~ 135 (471)
+.++.|++||+.+++..... ..+...+....| +| +++.++.. ..+..|.+||+
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANS--DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECT--TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred eCCCeEEEEECCCCcceeee-echhhcccccceeECC--CCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 99999999999998875444 455555544444 67 88888743 23467999999
Q ss_pred cccCcceeeEeeceeeeEEEEEEcc-CCCcEEEEEec------CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 136 LERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.+++... +..+...+..++|+| ++. .++.... ...|.++|+..++........ ....+..
T Consensus 176 ~~g~~~~---l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~---------~~~~~~~ 242 (388)
T 3pe7_A 176 KTGESTV---ILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA---------EGESCTH 242 (388)
T ss_dssp TTCCEEE---EEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC---------TTEEEEE
T ss_pred CCCceEE---eecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC---------CCccccc
Confidence 8775432 445667789999999 885 4554443 337888888766543322110 1124678
Q ss_pred EEEcCCCCceEEEEeCCC----eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc---ceEEEEEcCCCCeEEEee-
Q 012064 209 IAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV---GITGLAFSDQSELLVSYN- 280 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~- 280 (471)
.+|+|++..+++.+..++ .|++||+.+++..... ....+.. ......|+|||+.|+...
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT-------------SMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE-------------EECCEEEEEECTTSSEEEEEECCC-----
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE-------------cCCCceeeeecCCCCeEccCCCcceeEee
Confidence 899999543434443322 3999999887521100 0000000 011236899999877532
Q ss_pred ---------CCcEEEEecCCC
Q 012064 281 ---------DEFIYLFTQDMG 292 (471)
Q Consensus 281 ---------~~~i~i~d~~~~ 292 (471)
+..|++||+.++
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp -------CCCCEEEEEETTTT
T ss_pred eccccccCCCCEEEEEeccCC
Confidence 347999998764
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.87 E-value=2.1e-20 Score=173.02 Aligned_cols=281 Identities=11% Similarity=0.055 Sum_probs=179.4
Q ss_pred cEEEEEEcCCCCEEEEecCC---CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccC
Q 012064 63 CVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 139 (471)
.+.+++|||||++|+..... ..|.+||+.+++. ..+..++......+.|+| |+++|+.++.++.|++||+.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-VQLTEGKGDNTFGGFIST--DERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-EECCCSSCBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-EEeecCCCCccccceECC--CCCEEEEEEcCCcEEEEECCCCC
Confidence 37788999999998876443 4789999988775 344233333333478999 99999999999999999998766
Q ss_pred cceeeEeeceeeeEEE-------------------EEEccCCCcEEEEE----ecCCeEEEEeccCCccceeeeecccCC
Q 012064 140 GVETKLLGKHQGRAHK-------------------LAIEPGSPHVFYTC----GEDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
.... ...+...... ..|+|+++.+++.. ..+..|++||+.+++......
T Consensus 114 ~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~------ 185 (396)
T 3c5m_A 114 EQVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ------ 185 (396)
T ss_dssp EEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE------
T ss_pred cEEE--EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc------
Confidence 4432 2212221111 34677775432222 456789999999887654442
Q ss_pred cCcceeeeeeEEEEEcC-CCCceEEEEeCC------CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCC-ccceEEEE
Q 012064 197 RRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLA 268 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 268 (471)
....+..+.|+| + +..|+..+.+ ..|.+||+...+.. .+.... ...+..++
T Consensus 186 -----~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 186 -----DTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDARMWLVNEDGSNVR---------------KIKEHAEGESCTHEF 244 (396)
T ss_dssp -----ESSCEEEEEEETTE-EEEEEEEECSCSSSCSCCCEEEETTSCCCE---------------ESSCCCTTEEEEEEE
T ss_pred -----CCcccccceECCCC-CCEEEEEecCCCCCCCceEEEEECCCCcee---------------EeeccCCCccccceE
Confidence 334578899999 6 5555555433 35888888654311 111111 33578899
Q ss_pred EcCCCCeEEEee-C-----CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce
Q 012064 269 FSDQSELLVSYN-D-----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (471)
Q Consensus 269 ~~~~~~~l~~~~-~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (471)
|+|+|++|+..+ + +.+++||+.++.. ..+.....
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---------------------------------------~~l~~~~~- 284 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLEN---------------------------------------EEVMVMPP- 284 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCE---------------------------------------EEEEECCS-
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCe---------------------------------------EEeeeCCC-
Confidence 999999877654 2 2399999876421 11111111
Q ss_pred eEeeeeeeeCC-CCcEEEEee----------------CCCeEEEEEccCCeeeEEecCCCc-----------ceEEEEEc
Q 012064 343 VTVKGVNFFGP-KCEYVVSGS----------------DCGRIFIWKKKGGELIRVIEADRH-----------VVNCIEPH 394 (471)
Q Consensus 343 ~~i~~~~~~s~-~g~~l~~g~----------------~dg~v~iwd~~~~~~~~~~~~h~~-----------~v~~~~~s 394 (471)
.. ..| +| ||+++++++ .++.|++||+.+++.. .+..+.. .+..++|+
T Consensus 285 --~~-~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s 359 (396)
T 3c5m_A 285 --CS-HLM-SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFT 359 (396)
T ss_dssp --EE-EEE-ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEEC
T ss_pred --CC-CCc-cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEc
Confidence 12 566 88 999888754 3478999999887653 4444443 25678999
Q ss_pred CCCCEEEEeec-CCcEEEe--cCCCCCCc
Q 012064 395 PHSTVLASSGI-ESDIKIL--TPNAADRA 420 (471)
Q Consensus 395 ~~~~~l~s~~~-dg~i~iw--~~~~~~~~ 420 (471)
|||+.|+.++. ++...+| ++.+++..
T Consensus 360 ~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 360 PNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp TTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 99998877664 4554454 55555443
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.86 E-value=3e-18 Score=163.18 Aligned_cols=332 Identities=13% Similarity=0.067 Sum_probs=223.9
Q ss_pred CCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEE
Q 012064 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (471)
Q Consensus 8 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~i 87 (471)
+.+.++++...+++|.++|.++++.+ .++.. ...+..+.|+|||+++++++.|+.|.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~---------------------~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~v 222 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK---------------------TVLDT-GYAVHISRLSASGRYLFVIGRDGKVNM 222 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE---------------------EEEEC-SSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE---------------------EEEeC-CCCccceEECCCCCEEEEEcCCCeEEE
Confidence 44567888889999999999988877 34442 234668999999999999999999999
Q ss_pred EECC--CCceEEEeecCCCcceeEEEEe----cCCCCeEEEEEeC-CCeEEEEeccccCcceeeEeec--------eee-
Q 012064 88 WDWK--TERVKLSFHSGHNDNVFQAKIM----PFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQG- 151 (471)
Q Consensus 88 wd~~--~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--------~~~- 151 (471)
||+. +++.+.++..+ .....++|+ | ||++++++.. ++++.++|..+.+.+......+ |..
T Consensus 223 iD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 223 IDLWMKEPTTVAEIKIG--SEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp EETTSSSCCEEEEEECC--SEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EECCCCCCcEeEEEecC--CCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 9995 77877777432 345789999 8 9988887665 5899999988877765432222 222
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (471)
.+..+..+++++.+++....+|.|.++|....+........ .......+.|+|++..++++...++.|.++
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~---------~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------AERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------CCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee---------ccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 57788899988777777778899999999876533322211 112356789999954444555578899999
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCcccCCCcc-ceEEEEEcCCCC-eEEEee--CCcEEEEecCCCCCCCCCCCCCccccc
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSE-LLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~ 307 (471)
|+.++++......+ . ...|.+ .+. + ++|++. .+++.. ++.|.++|.........
T Consensus 370 D~~t~kl~~~i~vg---------g-~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~---------- 427 (567)
T 1qks_A 370 DTKEGKLVAIEDTG---------G-QTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN---------- 427 (567)
T ss_dssp ETTTTEEEEEEECS---------S-SSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT----------
T ss_pred ECCCCcEEEEEecc---------C-cCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc----------
Confidence 99988754332110 0 011221 222 2 578744 445553 56899999876322110
Q ss_pred cccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC-------CCeEEEEEccCC-----
Q 012064 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------CGRIFIWKKKGG----- 375 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-------dg~v~iwd~~~~----- 375 (471)
..+.++.+...... -..+.. +|+++++.+... ..+|.++|+.+.
T Consensus 428 ---------------------~~kvv~~i~~~g~g--~~~i~~-~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~ 483 (567)
T 1qks_A 428 ---------------------AWKILDSFPALGGG--SLFIKT-HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 483 (567)
T ss_dssp ---------------------BTSEEEEEECSCSC--CCCEEC-CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred ---------------------cCEEEEEEecCCCC--CEEEEe-CCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence 01223444433221 233555 999999988653 359999999876
Q ss_pred ee-eEEec--------CCCcceEEEEEcCCCCEEEEee-----cCCcEEEecCCCCCCc
Q 012064 376 EL-IRVIE--------ADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRA 420 (471)
Q Consensus 376 ~~-~~~~~--------~h~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~ 420 (471)
.. ...+. .....+..+.|+|+|+.+..+. .++.|.|+|..+.+..
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 21 12332 1235789999999999766553 3799999999998764
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=6.6e-20 Score=183.14 Aligned_cols=299 Identities=9% Similarity=0.010 Sum_probs=192.6
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcc-----eeEEEEecCCCCeEEEEEeCC---------C
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-----VFQAKIMPFTDDRSIVTCAAD---------G 128 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~s~~~d---------g 128 (471)
...+++|+|||++++++ |++|++||+.+++....+ .+|... ...+.|+| ||++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccce
Confidence 45689999999999986 899999999999875544 566533 23478899 99999998876 5
Q ss_pred eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccC-CcCccee-----
Q 012064 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT----- 202 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~----- 202 (471)
.+.+||+.+++... +..+...+...+|+|||+. |+.+ .++.|++||+.+++..+........ ...++..
T Consensus 93 ~~~~~d~~~~~~~~---l~~~~~~~~~~~~SPdG~~-la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEEETTTTEECC---SSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEEECCCCcEEE---cccCCCcceeeEECCCCCE-EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 67799998876543 5567778999999999964 4544 5789999999888754322110000 0000000
Q ss_pred --eeeeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe
Q 012064 203 --VVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 203 --~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
......+.|+|| ++.|+.++. ++.+.+|++...... ..+...+..+.+.+.|...
T Consensus 168 e~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~------------------~~~~~~~~~~~yp~~G~~~--- 225 (740)
T 4a5s_A 168 EVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDE------------------SLQYPKTVRVPYPKAGAVN--- 225 (740)
T ss_dssp HTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCST------------------TCSSCEEEEEECCBTTSCC---
T ss_pred hhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCC------------------CCCCCcceeecCCCCcCcC---
Confidence 012245899999 577776654 445888887533210 0123445667777766320
Q ss_pred eCCcEEEEecCC---CCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc
Q 012064 280 NDEFIYLFTQDM---GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (471)
Q Consensus 280 ~~~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~ 356 (471)
...++++||+.+ +....... ......+.++.. .+..++| +|||+
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~------------------------------l~~~~~~~~~~~--~~~~~~w-spdg~ 272 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQ------------------------------ITAPASMLIGDH--YLCDVTW-ATQER 272 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEE------------------------------ECCCHHHHTSCE--EEEEEEE-EETTE
T ss_pred CeeEEEEEECCCCCCCCcceEEE------------------------------ecCCccCCCCCe--EEEEEEE-eCCCe
Confidence 112689999987 42111000 000000112333 3888998 99999
Q ss_pred EEEEee----CCCeEEEEEccCCe----ee--EEe--cCCCcceE-----EEEEcCCCCEEE-Eeec-C--CcEEEecCC
Q 012064 357 YVVSGS----DCGRIFIWKKKGGE----LI--RVI--EADRHVVN-----CIEPHPHSTVLA-SSGI-E--SDIKILTPN 415 (471)
Q Consensus 357 ~l~~g~----~dg~v~iwd~~~~~----~~--~~~--~~h~~~v~-----~~~~s~~~~~l~-s~~~-d--g~i~iw~~~ 415 (471)
.++... .+..|++||+.+++ +. ..+ .+|...|. .++|+|||+.|+ ..+. + ..|++|++.
T Consensus 273 ~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 273 ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence 776543 23479999999887 22 222 44655554 789999999776 6654 3 458889999
Q ss_pred CCCCcccCcch
Q 012064 416 AADRATLPTNI 426 (471)
Q Consensus 416 ~~~~~~~~~~~ 426 (471)
+++...+....
T Consensus 353 ~~~~~~lT~g~ 363 (740)
T 4a5s_A 353 KKDCTFITKGT 363 (740)
T ss_dssp CSSCEESCCSS
T ss_pred CCceEecccCC
Confidence 88877776554
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=6e-19 Score=174.55 Aligned_cols=301 Identities=11% Similarity=0.028 Sum_probs=191.4
Q ss_pred EeccccccEEEEEEcCCCCEEEEe--cCCCeEEEEECCCCceEEEeecCCCccee---------EEEEe--cCCCCeE-E
Q 012064 56 KLDKHRGCVNTVSFNTDGDILISG--SDDRRVILWDWKTERVKLSFHSGHNDNVF---------QAKIM--PFTDDRS-I 121 (471)
Q Consensus 56 ~l~~h~~~V~~~~~s~~g~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~~-l 121 (471)
.+.+|...+..++|++++-++++. +.++...||....+.....+ ..|...+. ...|+ | |++. |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SP--Dg~~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRP--AGGPLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCS--SSSCEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeec--CCCeEE
Confidence 456789999999999987777777 66889999986555554555 45655555 56666 8 9998 7
Q ss_pred EEEeC-CCeEEEEecc--c-cCcceeeEeec-----eeeeEEEEEEccCCCcEEEEEecC----------CeEEEEeccC
Q 012064 122 VTCAA-DGQVRHAQIL--E-RGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGED----------GLVQHFDLRT 182 (471)
Q Consensus 122 ~s~~~-dg~i~iwd~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~ 182 (471)
+.++. +..|.++++. . ++. .. +.. |...+..++|+|||+ .|+.++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~-~~--l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVP-RP--LTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCC-EE--CSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEECCCCeEEEEcCCCCCCCCC-Ee--ccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCC
Confidence 76654 5567666664 2 332 22 444 567889999999995 56666665 5899999988
Q ss_pred ------CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC--------CeEEEEEcC-CCccCCCCCCCCC
Q 012064 183 ------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIR-KYKWDGSTDFGQP 247 (471)
Q Consensus 183 ------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~~~~~~~~ 247 (471)
++....... +...+..++|+|| +++|+.++.+ ..|++||+. +++..
T Consensus 171 ~~~~~~~~~~~l~~~----------~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-------- 231 (662)
T 3azo_A 171 SAAADRSAVRELSDD----------AHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-------- 231 (662)
T ss_dssp TTTTCGGGSEESSCS----------CSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE--------
T ss_pred CccccCCceeEEEec----------CCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCccc--------
Confidence 443222101 2235678899999 6777766644 379999998 44110
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC--cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCC
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (471)
....+..++...+..+.|+|||++++++. ++ .|++||..++.........
T Consensus 232 ----~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~----------------------- 284 (662)
T 3azo_A 232 ----DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE----------------------- 284 (662)
T ss_dssp ----EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-----------------------
T ss_pred ----ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-----------------------
Confidence 01122333456789999999999766666 44 5777776543211100000
Q ss_pred CCcccccCCeeeecCCcee-EeeeeeeeCCCCcEEEEeeCCCeEEEE--EccCCeeeEEecCCCcceEEE-EEcCCCCEE
Q 012064 325 ANTDVRIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSGSDCGRIFIW--KKKGGELIRVIEADRHVVNCI-EPHPHSTVL 400 (471)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~g~~l~~g~~dg~v~iw--d~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l 400 (471)
.. ....... .+..++| +|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++
T Consensus 285 ---------~~-~~~p~w~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~ 351 (662)
T 3azo_A 285 ---------EE-FAGPLWTPGMRWFAP-LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVG 351 (662)
T ss_dssp ---------SB-SSCCCCSTTCCSEEE-CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEE
T ss_pred ---------cc-ccCccccccCceEeE-eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEE
Confidence 00 0000000 0345677 899999999998 998998 555555 67788887778777 554333344
Q ss_pred EEeecCC--cEEEecCCCCCCccc
Q 012064 401 ASSGIES--DIKILTPNAADRATL 422 (471)
Q Consensus 401 ~s~~~dg--~i~iw~~~~~~~~~~ 422 (471)
++++.+. .|++|++.+++...+
T Consensus 352 ~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 352 VAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEcCCCCCCEEEEEECCCCceEEe
Confidence 4555554 466667767765544
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=2.6e-19 Score=163.40 Aligned_cols=249 Identities=9% Similarity=0.052 Sum_probs=159.9
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcc-cCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCE--EEEe
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRE-LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI--LISG 79 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~--l~s~ 79 (471)
.++++|++++|++++.+ .|.+|+++ +|++.. ......+ +.+.+++|+|||++ ++++
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-------------------~~~~~~~-g~~~~~~~spdg~~l~~~~~ 102 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-------------------EASHPIG-GHPRANDADTNTRAIFLLAA 102 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-------------------EEEEECC-SSGGGGCTTSCCEEEEEEEC
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-------------------eeEeecC-CCCccEEECCCCCEEEEEEe
Confidence 35689999999988888 99999997 666541 0111111 22456899999994 5565
Q ss_pred c-------------CCCeEEEEECC-CCceEEEee---cCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEecc-ccCc
Q 012064 80 S-------------DDRRVILWDWK-TERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQIL-ERGG 140 (471)
Q Consensus 80 ~-------------~d~~i~iwd~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~ 140 (471)
+ .++.+.+|++. +++....+. ..+...+.+++|+| ||++++++.. ++.|++|++. +++.
T Consensus 103 ~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred cCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCE
Confidence 4 68999999997 465543331 13556799999999 9998887654 6799999997 5544
Q ss_pred ceeeEee--ceeeeEEEEEEccCCCcEEEEEe-cCCeEEEEecc--CCccce---eeeecccCCcCcceeee------ee
Q 012064 141 VETKLLG--KHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLR--TGAATE---LFTCRPIDDRRNYMTVV------NL 206 (471)
Q Consensus 141 ~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~~---~~~~~~~~~~~~~~~~~------~v 206 (471)
.....+. .|...+..++|+|+++. +++++ .++.|.+|++. +++... .+...+.. ..+ +.. .+
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~-~~g--~~~~~~~~~~~ 256 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNY-LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG-IPD--RDPETGKGLYR 256 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT-CCC--BCTTTSSBSEE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCE-EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC-cCC--ccccccccccc
Confidence 3222222 23456899999999964 45544 57899999875 454321 12111100 000 111 47
Q ss_pred EEEE-EcCCCCceEEEEeCC-C-----eEEEEEcC-CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC---CCCe
Q 012064 207 NAIA-IDPRNANLFAVAGSD-E-----YTRLYDIR-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSEL 275 (471)
Q Consensus 207 ~~~~-~~p~~~~~l~~~~~d-g-----~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ 275 (471)
..++ |+|+ +++|+++..+ + .|.+|++. ++++... ......+......++|+| +|++
T Consensus 257 ~~i~~~spd-G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~------------~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 257 ADVCALTFS-GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ------------LFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp EEEEEECTT-SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE------------EEEEECSSCCTTCCCEEECTTCTTE
T ss_pred ccEEEECCC-CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe------------eeeeecCCCCcccceecCCCcCCCE
Confidence 8899 9999 5666665533 2 89999996 3332100 000111223345688999 8999
Q ss_pred EEEee--CCcEEEEecCC
Q 012064 276 LVSYN--DEFIYLFTQDM 291 (471)
Q Consensus 276 l~~~~--~~~i~i~d~~~ 291 (471)
|++++ ++.|.+|+++.
T Consensus 324 l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 324 MAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEECSSSCEEEEEEEET
T ss_pred EEEEEcCCCeEEEEEEch
Confidence 98887 35899999865
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=1.8e-18 Score=157.01 Aligned_cols=280 Identities=8% Similarity=-0.009 Sum_probs=182.8
Q ss_pred CCCEEEEec------CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC----------CCeEEEEec
Q 012064 72 DGDILISGS------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQI 135 (471)
Q Consensus 72 ~g~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~iwd~ 135 (471)
++++++... .|+.|.+||..+++.+..+ ..+..+ .++|+| |+++++++.. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 455555442 3679999999999988777 444444 899999 9999998863 578999999
Q ss_pred cccCcceeeEeec----eeeeEEEEEEccCCCcEEEEEec--CCeEEEEeccCCcccee-eeecccCCcCcceeeeeeEE
Q 012064 136 LERGGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 136 ~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~ 208 (471)
.+.+......+.. +......++++|+++ .++++.. ++.|.+||+++++.+.. +... ....
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------------~~~~ 155 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAA------------GCWS 155 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGT------------TEEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCC------------Ccce
Confidence 8776655432221 123456789999996 4555543 68999999999876554 3211 1233
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i 286 (471)
+.+.|+++..+++.+.||.+.+|++.. ++....... .........+ ..+.++|++..++..+ ++.+++
T Consensus 156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~---------~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v 225 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS---------KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYS 225 (361)
T ss_dssp EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC---------CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEE
T ss_pred eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc---------cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEE
Confidence 567787667888889999999999864 322100000 0000001111 1222355665555444 668999
Q ss_pred EecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee------cCCc--eeEeeeeeeeCCCCcEE
Q 012064 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK------GHRN--CVTVKGVNFFGPKCEYV 358 (471)
Q Consensus 287 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~i~~~~~~s~~g~~l 358 (471)
+|+...... ....+. .... +.....++| +|+++.+
T Consensus 226 ~d~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~p~g~~~~a~-~~dg~~l 268 (361)
T 2oiz_A 226 ADFSGDEVK------------------------------------VDGPWSLLNDEDKAKNWVPGGYNLVGL-HRASGRM 268 (361)
T ss_dssp EECSSSSCE------------------------------------EEEEEESCCHHHHHTTCEECCSSCEEE-ETTTTEE
T ss_pred EEecCCCce------------------------------------ecccccccCccccccccccCCeeEEEE-ecCCCeE
Confidence 998643110 000000 0000 000123566 9998887
Q ss_pred EEeeC-----------CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC--CC
Q 012064 359 VSGSD-----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA--DR 419 (471)
Q Consensus 359 ~~g~~-----------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~ 419 (471)
+++.. .+.|.+||+.+++.+..+..+. +.+++|+|||++|++++. +.|.+||..++ +.
T Consensus 269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~ 339 (361)
T 2oiz_A 269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKL 339 (361)
T ss_dssp EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEE
T ss_pred EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCccee
Confidence 76543 3589999999999999998877 999999999999998886 99999999998 55
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=1.1e-18 Score=172.73 Aligned_cols=239 Identities=9% Similarity=-0.033 Sum_probs=152.6
Q ss_pred CCCCCCCcEEEEe--cCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEE---------EEEEc--
Q 012064 4 ASNNNNNKRARTS--VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN---------TVSFN-- 70 (471)
Q Consensus 4 ~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~---------~~~~s-- 70 (471)
.++++++..++.+ ..++...||....+... +.+..|...+. ...|+
T Consensus 29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~l~~~~~~~~~~~~~~~~~~~~~~~S 87 (662)
T 3azo_A 29 VGAVGDEVWWVAPRPAEAGRATLVRRRADGAE---------------------ESALPAPWNVRNRVFEYSGFPWAGVPR 87 (662)
T ss_dssp EEEETTEEEEEEEETTTTTEEEEEEECTTSCE---------------------EESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred eEEcCCeEEEEecCcccCCcEEEEEECCCCCc---------------------ceeCCCCccccccccccCCccceeeee
Confidence 4566666666666 66889999996433322 34555555544 55565
Q ss_pred CCCCE-EEEecC-CCeEEEEECC--C-CceEEEeecC-----CCcceeEEEEecCCCCeEEEEEeCC----------CeE
Q 012064 71 TDGDI-LISGSD-DRRVILWDWK--T-ERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAAD----------GQV 130 (471)
Q Consensus 71 ~~g~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i 130 (471)
|||+. |+.++. +..|.+|++. . ++ ...+ .. |...+.+++|+| ||+.|++++.+ ..|
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEE
Confidence 99998 776554 5667777765 2 44 3444 33 677889999999 99999988876 589
Q ss_pred EEEeccc------cCcceeeEee-ceeeeEEEEEEccCCCcEEEEEecC--------CeEEEEecc-CC---ccceeeee
Q 012064 131 RHAQILE------RGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLR-TG---AATELFTC 191 (471)
Q Consensus 131 ~iwd~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~ 191 (471)
++||+.+ ++.. .+. .+...+..++|+|||+ .|+.++.+ ..|++||+. ++ +.......
T Consensus 164 ~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 164 AAVPLDGSAAADRSAVR---ELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEETTSTTTTCGGGSE---ESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEECCCCccccCCcee---EEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 9999977 4332 244 5556788899999995 45555544 479999998 56 22222221
Q ss_pred cccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEE
Q 012064 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (471)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (471)
+...+..++|+||+ .+++++..++ .|++||+.+++....... ......+ .-...+..++|
T Consensus 240 ----------~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p-----~w~~~~~~~~~ 301 (662)
T 3azo_A 240 ----------PEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGP-----LWTPGMRWFAP 301 (662)
T ss_dssp ----------TTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCC-----CCSTTCCSEEE
T ss_pred ----------CCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecccc--cccccCc-----cccccCceEeE
Confidence 13467899999995 5888888888 666667655442211000 0000000 00011456889
Q ss_pred cCCCCeEEEeeCCcEEEEec
Q 012064 270 SDQSELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 270 ~~~~~~l~~~~~~~i~i~d~ 289 (471)
+|++++++++..+.+++|.+
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~ 321 (662)
T 3azo_A 302 LANGLIAVVHGKGAAVLGIL 321 (662)
T ss_dssp CTTSCEEEEEBSSSCEEEEE
T ss_pred eCCCEEEEEEEcCccEEEEE
Confidence 99999888876666777743
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=6.1e-19 Score=163.12 Aligned_cols=234 Identities=10% Similarity=0.005 Sum_probs=151.4
Q ss_pred CCCCCCCCCcEEEEecCC---CeEEEEEcccCccccccccceecccccceeeeeeeEEecccccc-EEEEEEcCCCCEEE
Q 012064 2 DDASNNNNNKRARTSVDK---ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNTDGDILI 77 (471)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~~~~s~~g~~l~ 77 (471)
.+++++|+|++|+....+ ..|.+||.++++.. .+..+... ...+.|+|||++|+
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------~l~~~~~~~~~~~~~spdg~~l~ 96 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------QLTEGKGDNTFGGFISTDERAFF 96 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------ECCCSSCBCTTTCEECTTSSEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------EeecCCCCccccceECCCCCEEE
Confidence 356799999998776543 47888898877644 22223333 33478999999999
Q ss_pred EecCCCeEEEEECCCCceEEEeecCCCcceeE-------------------EEEecCCCCeEEEEE-----eCCCeEEEE
Q 012064 78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ-------------------AKIMPFTDDRSIVTC-----AADGQVRHA 133 (471)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~s~-----~~dg~i~iw 133 (471)
.++.++.|++||+.+++..... ..+...... +.|+| +++.++.. ..+..|.+|
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCC--CCcceeeeeeccCCCcceEEEE
Confidence 9999999999999888764433 333332222 35666 77666544 356689999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEcc-CCCcEEEEEecC------CeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
|+.+++... +..+...+..+.|+| ++. .++..+.+ ..|.+||+.+++...... .. ....+
T Consensus 174 d~~~g~~~~---~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~--------~~~~~ 240 (396)
T 3c5m_A 174 DIETGELEV---IHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HA--------EGESC 240 (396)
T ss_dssp ETTTCCEEE---EEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CC--------TTEEE
T ss_pred ECCCCcEEe---eccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCceeEeec-cC--------CCccc
Confidence 997766433 334667789999999 674 34444333 468889987665332221 00 12357
Q ss_pred EEEEEcCCCCceEEEEeCC-----CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeEEEee
Q 012064 207 NAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN 280 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 280 (471)
..++|+|+ +..|+.++.+ +.|++||+.+++... +... . ... +.|+| +|++++..+
T Consensus 241 ~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---------------l~~~-~-~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 241 THEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEE---------------VMVM-P-PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp EEEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEE---------------EEEC-C-SEE-EEEECSSSSEEEEEE
T ss_pred cceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEE---------------eeeC-C-CCC-CCccCCCCceEEEec
Confidence 78999999 5555555433 449999998764211 0000 1 122 88999 999887643
Q ss_pred -----------------CCcEEEEecCCC
Q 012064 281 -----------------DEFIYLFTQDMG 292 (471)
Q Consensus 281 -----------------~~~i~i~d~~~~ 292 (471)
+..|++||+.++
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTT
T ss_pred CCcceeeccccccccCCCCcEEEEecccC
Confidence 247999998764
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=2.6e-17 Score=148.38 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=182.4
Q ss_pred CCCCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
|..+.|+++...++..+.++.++.|. ++.. ..+..+...+.+++|+|+|++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~~~~~~~~~~~~~g~l~~~~~ 63 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEPW---------------------LEISKKGLQLEGLNFDRQGQLFLLDV 63 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---------------------EEEESSCCCEEEEEECTTSCEEEEET
T ss_pred cceeeecCCccceeEEeecccCcccc---ccee---------------------EEEeccCccccCcEECCCCCEEEEEC
Confidence 45678899988888888889999993 2322 35566777789999999999888888
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC----CeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
.++.|.+||..+++..... ..+...+.+++++| +++++++...+ +.|.+||..++..........+...+.++
T Consensus 64 ~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i 140 (333)
T 2dg1_A 64 FEGNIFKINPETKEIKRPF-VSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM 140 (333)
T ss_dssp TTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE
T ss_pred CCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccce
Confidence 8999999999887764433 35667899999999 99888877666 68999998766543211011234568999
Q ss_pred EEccCCCcEEEEEec------CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 157 AIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
+++|++ +++++... .+.|..+|.++++...... ....+..++|+|++..++++...++.|++
T Consensus 141 ~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 141 VFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------NISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp EECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeec-----------CCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 999998 45555443 2456666665544332211 12235778888873334444455677888
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
||+..... .+..+. + . + ..
T Consensus 209 ~d~~~~g~------------------------~~~~~~--~---~--------~-~~----------------------- 227 (333)
T 2dg1_A 209 IALEDDGV------------------------TIQPFG--A---T--------I-PY----------------------- 227 (333)
T ss_dssp EEECTTSS------------------------SEEEEE--E---E--------E-EE-----------------------
T ss_pred EEecCCCc------------------------Cccccc--c---e--------E-EE-----------------------
Confidence 88753110 000000 0 0 0 00
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCc----
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH---- 386 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~---- 386 (471)
.+.++ . .+..+++ +++|+++++...++.|++||. +++.+..+..+..
T Consensus 228 ------------------------~~~~~-~--~~~~i~~-d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 228 ------------------------YFTGH-E--GPDSCCI-DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGH 278 (333)
T ss_dssp ------------------------ECCSS-S--EEEEEEE-BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred ------------------------ecCCC-C--CCCceEE-CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccc
Confidence 00111 1 1556777 999998887777899999998 5666666654433
Q ss_pred --ceEEEEEcCCCCEEEEeecC
Q 012064 387 --VVNCIEPHPHSTVLASSGIE 406 (471)
Q Consensus 387 --~v~~~~~s~~~~~l~s~~~d 406 (471)
.+.+++|+||++.|+.++.+
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEEC
T ss_pred ccCcceEEECCCCCEEEEEeCc
Confidence 68999999998766655544
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1e-17 Score=150.46 Aligned_cols=262 Identities=14% Similarity=0.123 Sum_probs=175.4
Q ss_pred cccEEEEEEcCCCCEEEEecCC------------------------CeEEEEECCCCceEEEeecCCCcceeEEEEecCC
Q 012064 61 RGCVNTVSFNTDGDILISGSDD------------------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 116 (471)
-+.+.+++++|+|+++++...+ ++|.+||..+++....+..++-.....++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 4679999999999999988777 47999999989987766445556789999999
Q ss_pred CCeEEEEEeCCCeEEEEeccccC-cceeeEe---------eceeeeEEEEEEcc-CCCcEEEEEe-cCCeEEEEeccCCc
Q 012064 117 DDRSIVTCAADGQVRHAQILERG-GVETKLL---------GKHQGRAHKLAIEP-GSPHVFYTCG-EDGLVQHFDLRTGA 184 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~---------~~~~~~v~~~~~~~-~~~~~l~~~~-~dg~i~iwd~~~~~ 184 (471)
+++.+++...++.|++|+..... .+.. + ..+......++++| ++ .++++.+ .++.|++|| .+++
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~--~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLI--LGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGK 176 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEE--ESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEE--ecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCC
Confidence 99988888889999999975442 2221 2 23344688999999 56 6777775 689999999 4555
Q ss_pred cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccce
Q 012064 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (471)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (471)
....+...................++++|+++.++++...++.|++||..+++...... ...+...+
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~-------------~~~~~~~~ 243 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK-------------HASFGRNV 243 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------------CTTTTTCE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-------------ccccCCCc
Confidence 55444321110000000222367778887755666666677778888776443221100 00111223
Q ss_pred EEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeE
Q 012064 265 TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (471)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (471)
..++++| +..+
T Consensus 244 ~~~~~~p-g~~~-------------------------------------------------------------------- 254 (329)
T 3fvz_A 244 FAISYIP-GFLF-------------------------------------------------------------------- 254 (329)
T ss_dssp EEEEEET-TEEE--------------------------------------------------------------------
T ss_pred ceeeecC-CEEE--------------------------------------------------------------------
Confidence 3334433 1100
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec---CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCC
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 417 (471)
..+|+..++...+..|++||..+++.+..+. ++...+..++++|+|.++++...+++|++|++...
T Consensus 255 -------~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 255 -------AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp -------EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred -------EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 1133333333445689999999999888873 56677999999999988888889999999998753
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=1.2e-17 Score=151.40 Aligned_cols=269 Identities=12% Similarity=0.130 Sum_probs=173.3
Q ss_pred ccEEEEEEcCCCCEEEEec---------CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---C-
Q 012064 62 GCVNTVSFNTDGDILISGS---------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G- 128 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g- 128 (471)
..+..+++ ||++++... .++.|.+||+.+++. ..+ ..+..++|+| ||++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-----~~~~~~~~Sp--Dg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-----ENATMPRISP--DGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-----ESCEEEEECT--TSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-----ccCCCeEECC--CCCEEEEEEeccCCCc
Confidence 45667777 898887642 256899999988775 333 4678899999 99999887654 3
Q ss_pred -eEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEec--------------------------CCeEEEEecc
Q 012064 129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--------------------------DGLVQHFDLR 181 (471)
Q Consensus 129 -~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------------------------dg~i~iwd~~ 181 (471)
.|.+|++.+++... +..+.. +..++|+|+++.+++++.. ...|++||+.
T Consensus 85 ~~l~~~~~~~g~~~~---l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 85 SEIWVADLETLSSKK---ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEEETTTTEEEE---EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred ceEEEEECCCCceEE---EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 37777776654433 333334 8999999999654444322 2579999998
Q ss_pred CCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC-------eEEEEEcCCCccCCCCCCCCCCCcCCCC
Q 012064 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-------YTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (471)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (471)
+++....+.. . .+..++|+|+ + +++++..++ ...+|.+.+++. .
T Consensus 161 ~~~~~~~l~~-----------~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---------------~ 211 (347)
T 2gop_A 161 SEEVIEEFEK-----------P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWEDGKE---------------E 211 (347)
T ss_dssp TTEEEEEEEE-----------E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEETTEE---------------E
T ss_pred CCeEEeeecC-----------C-CcccccCCCC-e-EEEEEecccccccccccccEEEeCCCce---------------E
Confidence 8876344331 1 4678899999 5 776665442 334444433321 1
Q ss_pred cccCCCccceEEEEEcCCCCeEEEee-C--------CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCC
Q 012064 255 NLIGDEQVGITGLAFSDQSELLVSYN-D--------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (471)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (471)
.+.. + ..+..+ +|+|++|+..+ + ..|++|| ++.
T Consensus 212 ~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-------------------------------- 253 (347)
T 2gop_A 212 KMFE-K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-------------------------------- 253 (347)
T ss_dssp EEEE-E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC--------------------------------
T ss_pred Eecc-C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc--------------------------------
Confidence 1111 1 334443 89999887665 2 2477777 321
Q ss_pred CcccccCCeeeecCCceeEeee-eeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEee
Q 012064 326 NTDVRIAPQVYKGHRNCVTVKG-VNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG 404 (471)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 404 (471)
......++... +.. +.| + |+ ++++++.++.++|| +.+++.. .+..+.+.|.+++|+| .++++++
T Consensus 254 ------~~~l~~~~~~~--~~~~~~~-s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 254 ------VMGILDEVDRG--VGQAKIK-D-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp ------EEESSTTCCSE--EEEEEEE-T-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEE
T ss_pred ------eEeccccCCcc--cCCccEE-c-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEc
Confidence 11111223332 554 777 8 88 88899999999999 8766654 4444577899999999 6777777
Q ss_pred cCCcE-EEecCCCCCCcccCcchh
Q 012064 405 IESDI-KILTPNAADRATLPTNIE 427 (471)
Q Consensus 405 ~dg~i-~iw~~~~~~~~~~~~~~~ 427 (471)
.++.. .+|.++ ++..++..+..
T Consensus 319 ~~~~~~~l~~~~-g~~~~lt~~n~ 341 (347)
T 2gop_A 319 TATRLRELFTWD-GEEKQLTDYND 341 (347)
T ss_dssp CSSSCCEEEEES-SSEEECCCTTS
T ss_pred CCCChHHheEeC-CcEEEeccccH
Confidence 77654 777766 55555555544
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=3.4e-16 Score=137.68 Aligned_cols=246 Identities=15% Similarity=0.181 Sum_probs=169.1
Q ss_pred ccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeec-----CCCcceeEEEEe-cCCCCeEEEEEeC-CCeE
Q 012064 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIM-PFTDDRSIVTCAA-DGQV 130 (471)
Q Consensus 58 ~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~~l~s~~~-dg~i 130 (471)
.+|-..+.+++++++|+++++...++.|.+||.. ++.+..+.. ++...+..+++. + ++..+++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEE
Confidence 3556778999999999999988889999999976 666555521 244578899995 5 6776666643 7899
Q ss_pred EEEeccccCcceeeEee-ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 131 RHAQILERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
.+|+ .+++.... +. .+...+.+++++|++ +++++...++.|.+||.. ++....+.... ....+..+
T Consensus 103 ~~~d-~~g~~~~~--~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~--------~~~~p~~i 169 (286)
T 1q7f_A 103 QIYN-QYGQFVRK--FGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSK--------HLEFPNGV 169 (286)
T ss_dssp EEEC-TTSCEEEE--ECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTT--------TCSSEEEE
T ss_pred EEEC-CCCcEEEE--ecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCC--------ccCCcEEE
Confidence 9999 34443322 22 234568899999998 577777778999999964 44444332110 22347899
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CC-cEEEE
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLF 287 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~ 287 (471)
+++|+ ++++++...++.|++||...... ... ...++...+..++++|+|+++++.. ++ .|.+|
T Consensus 170 ~~~~~-g~l~v~~~~~~~i~~~~~~g~~~-~~~-------------~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 170 VVNDK-QEIFISDNRAHCVKVFNYEGQYL-RQI-------------GGEGITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp EECSS-SEEEEEEGGGTEEEEEETTCCEE-EEE-------------SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred EECCC-CCEEEEECCCCEEEEEcCCCCEE-EEE-------------ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 99998 67777777889999999754321 100 0011124578999999999888776 44 89999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeE
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v 367 (471)
+... ..+..+..+.....+.++++ +|+|+++++ +.|+.|
T Consensus 235 ~~~g---------------------------------------~~~~~~~~~~~~~~~~~i~~-~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 235 TQDG---------------------------------------QLISALESKVKHAQCFDVAL-MDDGSVVLA-SKDYRL 273 (286)
T ss_dssp CTTS---------------------------------------CEEEEEEESSCCSCEEEEEE-ETTTEEEEE-ETTTEE
T ss_pred CCCC---------------------------------------CEEEEEcccCCCCcceeEEE-CCCCcEEEE-CCCCeE
Confidence 9543 12233333322222668888 999987777 579999
Q ss_pred EEEEccCC
Q 012064 368 FIWKKKGG 375 (471)
Q Consensus 368 ~iwd~~~~ 375 (471)
++|++...
T Consensus 274 ~v~~~~~~ 281 (286)
T 1q7f_A 274 YIYRYVQL 281 (286)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99998553
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=1.7e-16 Score=139.57 Aligned_cols=243 Identities=12% Similarity=0.137 Sum_probs=166.7
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEE-cCCCCEEEEecC-
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF-NTDGDILISGSD- 81 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-s~~g~~l~s~~~- 81 (471)
+++++++.++++...++.|.+||.+ ++... .+.....-.+|...+..+++ .++++++++...
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~---------------~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKF---------------QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEE---------------EECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred EEECCCCCEEEEECCCCEEEEECCC-CcEEE---------------EecccCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 4567888888888899999999987 55441 00000001235567899999 578877776643
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccC
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (471)
++.|.+|| .+++.+..+...+...+.++++.| +++.+++...++.|.+|+.. ++.........+...+.+++++++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC
Confidence 78999999 667776666444556789999999 99888887788999999964 333222111134456899999999
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC-eEEEEEcCCCccCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRLYDIRKYKWDG 240 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~ 240 (471)
+ +++++...++.|++||.. ++....+.... ....+..++++|+ ++++++...++ .|.+||..... ..
T Consensus 175 g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g--------~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~g~~-~~ 242 (286)
T 1q7f_A 175 Q-EIFISDNRAHCVKVFNYE-GQYLRQIGGEG--------ITNYPIGVGINSN-GEILIADNHNNFNLTIFTQDGQL-IS 242 (286)
T ss_dssp S-EEEEEEGGGTEEEEEETT-CCEEEEESCTT--------TSCSEEEEEECTT-CCEEEEECSSSCEEEEECTTSCE-EE
T ss_pred C-CEEEEECCCCEEEEEcCC-CCEEEEEccCC--------ccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCCCCE-EE
Confidence 8 577777788999999974 34333332110 1135689999998 57777777775 99999964322 11
Q ss_pred CCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
.. ........+..++++|+|+++++..++.|++|+...
T Consensus 243 ~~-------------~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 243 AL-------------ESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EE-------------EESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred EE-------------cccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 10 001112346789999999888876577899999865
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.78 E-value=3.8e-15 Score=131.86 Aligned_cols=286 Identities=10% Similarity=0.035 Sum_probs=191.5
Q ss_pred eccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
+..+...+.+++++++|+++++...++.|.+||.. ++........+...+.++++.+ ++..+++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC
Confidence 34456789999999999988877768899999988 6543322233456789999999 99888887778899999975
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
++ .....+......+.++++.+++ .++++...++.|..||. +++... +.... ....+..++++|+ +
T Consensus 87 -g~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~--------~~~~~~~i~~~~~-g 152 (299)
T 2z2n_A 87 -GI-IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIRE-YELPN--------KGSYPSFITLGSD-N 152 (299)
T ss_dssp -SC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-S
T ss_pred -Cc-EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEE-ecCCC--------CCCCCceEEEcCC-C
Confidence 22 2221122234568899999988 56666667889999998 554332 21110 1235789999998 5
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP 295 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~ 295 (471)
.+.++...++.|..||. +++.... ........+..++++++|+++++.. .+.+..|+. ++..
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~--------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~- 215 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEF--------------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI- 215 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEE--------------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEe--------------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-
Confidence 67666666789999998 5432110 0111234578999999998766654 568999997 4310
Q ss_pred CCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCC
Q 012064 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~ 375 (471)
.......+.. .+.++++ +++|++.++...++.|..||. ++
T Consensus 216 ------------------------------------~~~~~~~~~~--~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g 255 (299)
T 2z2n_A 216 ------------------------------------TEFKIPTPNA--RPHAITA-GAGIDLWFTEWGANKIGRLTS-NN 255 (299)
T ss_dssp ------------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEEET-TT
T ss_pred ------------------------------------EEEECCCCCC--CceeEEE-CCCCCEEEeccCCceEEEECC-CC
Confidence 0000111112 2778888 999997776667889999998 45
Q ss_pred eeeEE-ecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 376 ELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 376 ~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
+.... +..+...+.++++ ++++++++.+ .+.+..++.++++
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 43322 3345567899999 8888777665 5677777776543
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=6e-16 Score=147.44 Aligned_cols=288 Identities=12% Similarity=0.096 Sum_probs=196.2
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc--ccCcceeeEeec
Q 012064 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL--ERGGVETKLLGK 148 (471)
Q Consensus 71 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~ 148 (471)
|.+.++++...+++|.++|..+++.+.++..+ ..+..+.|+| |++++++++.|+.|.+||+. +.+.+.. +..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~--i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEE--EEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEE--Eec
Confidence 44567778888999999999999998887433 3567899999 99999999999999999995 5544433 332
Q ss_pred eeeeEEEEEEc----cCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCc-CcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 149 HQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 149 ~~~~v~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
. .....++|+ |+|+.++++...++.+.++|..+.+.+..+........ ..+.....+..+..++++..+++...
T Consensus 239 G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 239 G-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp C-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 2 235789999 69976666667779999999999988877654321100 00001225778888998777777777
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCC
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSS 301 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~ 301 (471)
..|.|.++|....+.... ..+ ........+.|+|+|++++++. +++|.++|..+++.
T Consensus 318 ~~g~v~~vd~~~~~~~~v------------~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl------- 376 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKT------------TEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL------- 376 (567)
T ss_dssp TTTEEEEEETTCSSEEEE------------EEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-------
T ss_pred CCCeEEEEecCCCcccee------------eee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-------
Confidence 889999999876431100 000 1123356789999999887665 56899999987521
Q ss_pred CccccccccccCCCCCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEE-EEee-CCCeEEEEEccC----
Q 012064 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYV-VSGS-DCGRIFIWKKKG---- 374 (471)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l-~~g~-~dg~v~iwd~~~---- 374 (471)
.....- ...+..-....|++|++..+ +++. .++.|.++|..+
T Consensus 377 -------------------------------~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 377 -------------------------------VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp -------------------------------EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred -------------------------------EEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 111111 11000011223347875544 4443 468999999987
Q ss_pred ---CeeeEEecCCCcceEEEEEcCCCCEEEEeec-------CCcEEEecCCCC
Q 012064 375 ---GELIRVIEADRHVVNCIEPHPHSTVLASSGI-------ESDIKILTPNAA 417 (471)
Q Consensus 375 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------dg~i~iw~~~~~ 417 (471)
.+.++++......-..+..+|++++|..... .+.|.++|+.+.
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6777888765444456788999998877652 469999999876
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=2.7e-16 Score=156.39 Aligned_cols=252 Identities=8% Similarity=-0.049 Sum_probs=160.7
Q ss_pred cccccEEEEEEcCCCCEEEEecCCC-----eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe----
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---- 129 (471)
+|...+..++|||||++||.+..++ .|++||+.+++........ ..+..++|+| |++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wsp--Dg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTH--DGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEe--CCCEEEEEEECCccccc
Confidence 4556789999999999999765533 8999999999876543222 2367899999 9999999887765
Q ss_pred ------------EEEEeccccCcceeeEeec--eeeeEEEEEEccCCCcEEEEEec----CCeEEEEeccC------Cc-
Q 012064 130 ------------VRHAQILERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGE----DGLVQHFDLRT------GA- 184 (471)
Q Consensus 130 ------------i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~------~~- 184 (471)
|++|++.++.......+.. +...+..+.|+|+++.++++... +..|++||+.+ +.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 9999997765432222222 34557889999999655444431 56899999876 32
Q ss_pred cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCc
Q 012064 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (471)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (471)
....+... ...+.. .|+|+++.+++.+..+ +.|.+||+.+.+
T Consensus 278 ~~~~l~~~----------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~------------------------ 322 (710)
T 2xdw_A 278 KWVKLIDN----------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE------------------------ 322 (710)
T ss_dssp CCEEEECS----------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC------------------------
T ss_pred ceEEeeCC----------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC------------------------
Confidence 12222210 011111 3555533222222211 134444443321
Q ss_pred cceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCc
Q 012064 262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (471)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (471)
......+..+..
T Consensus 323 --------------------------------------------------------------------~~~~~~l~~~~~ 334 (710)
T 2xdw_A 323 --------------------------------------------------------------------ESKWKVLVPEHE 334 (710)
T ss_dssp --------------------------------------------------------------------GGGCEEEECCCS
T ss_pred --------------------------------------------------------------------cccceeccCCCC
Confidence 000122222222
Q ss_pred eeEeeeeeeeCCCCcEEEEeeCCCe--EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEE-Eee---cCCcEEEecCC
Q 012064 342 CVTVKGVNFFGPKCEYVVSGSDCGR--IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA-SSG---IESDIKILTPN 415 (471)
Q Consensus 342 ~~~i~~~~~~s~~g~~l~~g~~dg~--v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~---~dg~i~iw~~~ 415 (471)
...+..+.| ++++.++++...|+. |++|++.+|+.+..+..+.+.+..++++|+++.++ +.+ ..++|+.||+.
T Consensus 335 ~~~~~~~~~-~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 335 KDVLEWVAC-VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp SCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CCeEEEEEE-EcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 112667777 777888888888884 56677767887788888888899999999997555 322 35789999998
Q ss_pred CCC
Q 012064 416 AAD 418 (471)
Q Consensus 416 ~~~ 418 (471)
+++
T Consensus 414 tg~ 416 (710)
T 2xdw_A 414 KEE 416 (710)
T ss_dssp SSS
T ss_pred CCc
Confidence 877
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.76 E-value=1.4e-15 Score=136.13 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=186.8
Q ss_pred CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEE
Q 012064 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97 (471)
Q Consensus 18 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~ 97 (471)
.+++|.+||.++++.....+... .-.........+.+. +++.+++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~---------------n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~ 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA---------------NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH---------------HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhh---------------cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE
Confidence 48999999999988764221100 000112345667774 45566666678999999999999988
Q ss_pred EeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec---eeeeEEEEEEccCCCcEEEEEe-cCC
Q 012064 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK---HQGRAHKLAIEPGSPHVFYTCG-EDG 173 (471)
Q Consensus 98 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~-~dg 173 (471)
++. .......+++++ +++.+++...++.|.+||..+++......... .......+++ .++ +++++.. .++
T Consensus 79 ~i~--~~~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~ 152 (328)
T 3dsm_A 79 RIT--GFTSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQN 152 (328)
T ss_dssp EEE--CCSSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCC
T ss_pred EcC--CCCCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCC
Confidence 873 346788999998 88655555478999999998776544322221 0013456667 344 5555544 488
Q ss_pred eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC----------CeEEEEEcCCCccCCCCC
Q 012064 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----------EYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~ 243 (471)
.|.++|+++++....+... .....++++|+ +++++++..+ +.|.++|..+.+......
T Consensus 153 ~v~viD~~t~~~~~~i~~g-----------~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIG-----------IQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEEETTTTEEEEEEECS-----------SCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCeEEEEEEcC-----------CCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 9999999999877666531 13467889998 5666665544 789999998876432211
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
. ........++++|++++|..+.. .+.+||..+++....
T Consensus 221 ~--------------~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~-------------------------- 259 (328)
T 3dsm_A 221 F--------------KLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVR-------------------------- 259 (328)
T ss_dssp C--------------CTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSS--------------------------
T ss_pred c--------------CCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeee--------------------------
Confidence 1 11125789999999998877665 899999877532110
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCC-CCcEEEEe----eCCCeEEEEEccCCeeeEEecCCCcceEEEEE
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSG----SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~g~~l~~g----~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (471)
..+..... ....+++ +| ++++.++. ..++.|.+||.. ++.+..+.. ......++|
T Consensus 260 ----------~~~~~~~~--~p~gi~v-dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 260 ----------PFLEFRDT--KYYGLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp ----------CSBCCCSS--CEEEEEE-CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred ----------eeecCCCC--ceEEEEE-cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 00111111 2677888 98 55555555 568999999997 888887753 223455555
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=1.6e-16 Score=157.65 Aligned_cols=251 Identities=8% Similarity=-0.033 Sum_probs=157.3
Q ss_pred cccccEEEEEEcCCCCEEE-----EecCCCeEEEEECCCCceEEEeecCCCcce--eEEEEecCCCCeEEEEEeCCCe--
Q 012064 59 KHRGCVNTVSFNTDGDILI-----SGSDDRRVILWDWKTERVKLSFHSGHNDNV--FQAKIMPFTDDRSIVTCAADGQ-- 129 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~-----s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~-- 129 (471)
+|...+..++|||||++|| .|+.+.+|++||+.+++.+. ..+...+ ..++|+| ||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wsp--Dg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTP--DSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECT--TSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEec--CCCEEEEEEecCCCC
Confidence 5667899999999999999 45556799999999988641 1122222 6889999 9999999988765
Q ss_pred -----------EEEEeccccCcceeeEee--ceeeeEEEEEEccCCCcEEEEEecCC----eEEEEeccCCccceeeeec
Q 012064 130 -----------VRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCR 192 (471)
Q Consensus 130 -----------i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~ 192 (471)
|++|++.++.......+. .+...+..+.|+|+|+.+ +.++.++ .|++||..+++......
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~~~l~~~~~~~~~~~~l~~-- 269 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYL-FVYILRGWSENDVYWKRPGEKDFRLLVK-- 269 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCE-EEEEEETTTEEEEEEECTTCSSCEEEEE--
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEE-EEEEeCCCCceEEEEEcCCCCceEEeec--
Confidence 999999877643222222 344578899999999655 4444444 56666655443322221
Q ss_pred ccCCcCcceeeeeeEEEEEcCCCCceEEEEe---CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEE
Q 012064 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (471)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (471)
+...+....+ ++++ +++.+. .++.|.+||+.+.+.
T Consensus 270 ---------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~------------------------------- 307 (695)
T 2bkl_A 270 ---------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR------------------------------- 307 (695)
T ss_dssp ---------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-------------------------------
T ss_pred ---------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-------------------------------
Confidence 1112233334 4433 333332 134555555543210
Q ss_pred cCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeee
Q 012064 270 SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (471)
Q Consensus 270 ~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (471)
.....+..+.....+..+.
T Consensus 308 -------------------------------------------------------------~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 308 -------------------------------------------------------------ASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp -------------------------------------------------------------GGCEEEECCCSSCEEEEEE
T ss_pred -------------------------------------------------------------cCCeEEecCCCCCeEEEEE
Confidence 0001111111111256667
Q ss_pred eeCCCCcEEEEeeCCCeEEEEEcc-CCeeeEEecCC-CcceEEEEEcCCCCEEE----EeecCCcEEEecCCCCCCccc
Q 012064 350 FFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEAD-RHVVNCIEPHPHSTVLA----SSGIESDIKILTPNAADRATL 422 (471)
Q Consensus 350 ~~s~~g~~l~~g~~dg~v~iwd~~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~~~~~ 422 (471)
+ + ++.++++...|+..+||.+. +++....+..+ .+.+..++++|+++.++ +....++|++||+.+++...+
T Consensus 327 ~-~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 327 I-V-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp E-E-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred E-E-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 7 5 67788888999988887665 46666666655 66788899999998666 333457899999988775443
No 184
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.76 E-value=5.7e-15 Score=133.97 Aligned_cols=292 Identities=12% Similarity=0.025 Sum_probs=187.0
Q ss_pred CCCCCcEEEEecC--CC---eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 6 NNNNNKRARTSVD--KA---LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 6 ~~~~~~~l~~~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
.+|+++++.+... .. +|.++|..+++.+ .++.....+ .+++||||++|+.+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~---------------------~~i~~g~~p--~i~~spDg~~lyv~n 84 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL---------------------GHVNGGFLP--NPVAAHSGSEFALAS 84 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE---------------------EEecCCCCC--CeEECCCCCEEEEEe
Confidence 3477777776653 33 8899999988766 344433344 899999999998875
Q ss_pred ----------CCCeEEEEECCCCceEEEeecC-C-----CcceeEEEEecCCCCeEEEEEeC--CCeEEEEeccccCcce
Q 012064 81 ----------DDRRVILWDWKTERVKLSFHSG-H-----NDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVE 142 (471)
Q Consensus 81 ----------~d~~i~iwd~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~ 142 (471)
.++.|.+||..+.+.+..+..+ . ...-..+.|+| ||++|+++.. ++.|.++| .+++...
T Consensus 85 ~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred ccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 3678999999988887776332 0 12345789999 9999998874 47899999 8776543
Q ss_pred e-eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 143 T-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 143 ~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
. .... .++.+.|++++.+++.+.||.+.++|. +++........... . + ...-.....+.++++.++++
T Consensus 162 ~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~-~--~~p~~~~~~~~~~~~~~~~~ 230 (373)
T 2mad_H 162 QLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-T-A--AQNLLTQPAQANKSGRIVWP 230 (373)
T ss_pred EEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-c-C--CcceeecceeEecCCEEEEE
Confidence 3 2111 124566777677888889999999999 77665332210000 0 0 00011234566664444444
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSS 301 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~ 301 (471)
. ..+.+.+.|+........ ..+...........|.|.+
T Consensus 231 ~-~~~~v~vid~~~~~~~v~-------------~~~~~~~~~~~~~~~~p~g---------------------------- 268 (373)
T 2mad_H 231 V-YSGKILQADISAAGATNK-------------APIDALSGGRKADTWRPGG---------------------------- 268 (373)
T ss_pred c-CCceEEEEeccCCcceEe-------------eeeeecCCcccccceecCc----------------------------
Confidence 3 677888888865321000 0000000000001111111
Q ss_pred CccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC----------CCeEEEEE
Q 012064 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----------CGRIFIWK 371 (471)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~----------dg~v~iwd 371 (471)
...+.+ +|+++.++.+.. ++.|.++|
T Consensus 269 -------------------------------------------~~~~~~-s~d~~~lyV~~~~~~~~~~~~~~~~V~VID 304 (373)
T 2mad_H 269 -------------------------------------------WQQVAY-LKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred -------------------------------------------eEeEEE-CCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence 223445 788877766542 35899999
Q ss_pred ccCCeeeEEecCCCcceEEEEEcCCCC-EEEEee-cCCcEEEecCCCCCCcc
Q 012064 372 KKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRAT 421 (471)
Q Consensus 372 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~ 421 (471)
+.+++.+..+.. ......++|+|||+ +++++. .++.|.++|..+++...
T Consensus 305 ~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 305 GLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 999999988854 33689999999999 787777 48999999999987743
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=9.1e-16 Score=139.06 Aligned_cols=260 Identities=10% Similarity=0.071 Sum_probs=163.5
Q ss_pred CCcEEEEec---------CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 9 NNKRARTSV---------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 9 ~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
+|++++... .++.|.+||+++++.. .+ ..+..++|||||++||..
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------------------~l----~~~~~~~~SpDg~~la~~ 76 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----------------------FI----ENATMPRISPDGKKIAFM 76 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----------------------EE----ESCEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----------------------Ec----ccCCCeEECCCCCEEEEE
Confidence 677766532 3678899999876643 23 467889999999999987
Q ss_pred cCC---C--eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---------------------------
Q 012064 80 SDD---R--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------------------------- 127 (471)
Q Consensus 80 ~~d---~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------------------- 127 (471)
+.+ + .|.+||+.+++..... . +.. +..++|+| |++.|+.++.+
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 77 RANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNE--DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECT--TSSEEEEEEECCCC---------CCCC---------CE
T ss_pred EeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECC--CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 653 2 4888898877764433 2 233 99999999 99998887642
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC-------eEEEEeccCCccceeeeecccCCcCcc
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-------LVQHFDLRTGAATELFTCRPIDDRRNY 200 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (471)
..|.+||+.+++.... +.. . .+..++|+|++ +++++..++ ...+|.+.+++.. .+..
T Consensus 152 ~~l~~~d~~~~~~~~~--l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~--------- 215 (347)
T 2gop_A 152 TTFWIFDTESEEVIEE--FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFE--------- 215 (347)
T ss_dssp EEEEEEETTTTEEEEE--EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEE---------
T ss_pred ceEEEEECCCCeEEee--ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE-Eecc---------
Confidence 5788999877654222 333 3 77889999998 566665432 3445544444332 2221
Q ss_pred eeeeeeEEEEEcCCCCceEEEEeCC--------CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEE-EEEcC
Q 012064 201 MTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG-LAFSD 271 (471)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~ 271 (471)
+ ..+..+ +|+ +..|+.++.+ ..|++|| +++. ..+...+...+.. +.|+
T Consensus 216 -~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~---------------~~l~~~~~~~~~~~~~~s- 272 (347)
T 2gop_A 216 -K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIYD--GKEV---------------MGILDEVDRGVGQAKIKD- 272 (347)
T ss_dssp -E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEEC--SSCE---------------EESSTTCCSEEEEEEEET-
T ss_pred -C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEEC--CCce---------------EeccccCCcccCCccEEc-
Confidence 2 233333 898 5666655533 4688888 3321 1222334566776 8999
Q ss_pred CCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeee
Q 012064 272 QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (471)
Q Consensus 272 ~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (471)
++ ++++++ ++.+++| +.++ .. ..+..+.. .+.++.|
T Consensus 273 dg-~~~~~~~~~~~~l~-~~~g--------------------------------------~~-~~~~~~~~--~v~~~~~ 309 (347)
T 2gop_A 273 GK-VYFTLFEEGSVNLY-IWDG--------------------------------------EI-KPIAKGRH--WIMGFDV 309 (347)
T ss_dssp TE-EEEEEEETTEEEEE-EESS--------------------------------------SE-EEEECSSS--EEEEEEE
T ss_pred Cc-EEEEEecCCcEEEE-EcCC--------------------------------------ce-EEEecCCC--eEEeeee
Confidence 88 777666 6688888 7632 11 22223333 3788888
Q ss_pred eCCCCcEEEEeeCCCeE-EEEEccCCeeeEEecCCCc
Q 012064 351 FGPKCEYVVSGSDCGRI-FIWKKKGGELIRVIEADRH 386 (471)
Q Consensus 351 ~s~~g~~l~~g~~dg~v-~iwd~~~~~~~~~~~~h~~ 386 (471)
+| .++++++.++.. .+|.+. ++ ...+..|..
T Consensus 310 -s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 310 -DE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp -SS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred -eC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 88 677777766654 677665 54 445655543
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=2.9e-16 Score=140.96 Aligned_cols=241 Identities=14% Similarity=0.081 Sum_probs=168.7
Q ss_pred CCCCCCCCcEEEEecCC------------------------CeEEEEEcccCccccccccceecccccceeeeeeeEEec
Q 012064 3 DASNNNNNKRARTSVDK------------------------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD 58 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 58 (471)
.++++++|+++++...+ ++|.+||.++|+.. ..+.
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------------------~~~~ 86 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL---------------------QSSG 86 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE---------------------EEEC
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE---------------------eccC
Confidence 46788999999888877 47999999888765 2222
Q ss_pred -cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eEEEee--------cCCCcceeEEEEecCCC-CeEEEEEe-C
Q 012064 59 -KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSFH--------SGHNDNVFQAKIMPFTD-DRSIVTCA-A 126 (471)
Q Consensus 59 -~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~-~~~l~s~~-~ 126 (471)
++-.....++++|+|+++++...++.|++||..... .+..+- .++......++++| + +..+++.+ .
T Consensus 87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~--~~g~lyv~d~~~ 164 (329)
T 3fvz_A 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP--STGAVFVSDGYC 164 (329)
T ss_dssp TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT--TTCCEEEEECSS
T ss_pred CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC--CCCeEEEEeCCC
Confidence 455678999999999999998889999999976442 444442 23444688999998 5 55555554 5
Q ss_pred CCeEEEEeccccCcceeeEee----------ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC
Q 012064 127 DGQVRHAQILERGGVETKLLG----------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (471)
++.|++|+. ++..... +. ++-.....++++|++.+++++...++.|++||.++++.+..+....
T Consensus 165 ~~~I~~~~~-~g~~~~~--~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~--- 238 (329)
T 3fvz_A 165 NSRIVQFSP-SGKFVTQ--WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS--- 238 (329)
T ss_dssp CCEEEEECT-TSCEEEE--ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT---
T ss_pred CCeEEEEcC-CCCEEEE--eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc---
Confidence 899999994 4443332 22 1233478999999844788888889999999999888776664321
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEE-------EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEE
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAV-------AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (471)
....+..++++| +..+.+ ...+..|++||..+++....... ...+......+++
T Consensus 239 -----~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------~~~~~~~p~~ia~ 299 (329)
T 3fvz_A 239 -----FGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------VRKHFDMPHDIVA 299 (329)
T ss_dssp -----TTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------SSSCCSSEEEEEE
T ss_pred -----cCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------CCCccCCeeEEEE
Confidence 223567888888 223332 33445899999988764432110 1233456789999
Q ss_pred cCCCCeEEEee-CCcEEEEecCC
Q 012064 270 SDQSELLVSYN-DEFIYLFTQDM 291 (471)
Q Consensus 270 ~~~~~~l~~~~-~~~i~i~d~~~ 291 (471)
+|+|.++++.. ++.|++|++..
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCc
Confidence 99997666665 56899999865
No 187
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.74 E-value=7.7e-15 Score=131.02 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=194.9
Q ss_pred CCCCCCcEEEEecC-----CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEe
Q 012064 5 SNNNNNKRARTSVD-----KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 5 ~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 79 (471)
..+|+++++++... ++.|.+.|..+++.+ .++.....+ . ++++|||++|+++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~---------------------~~I~vG~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI---------------------GMIDGGFLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE---------------------EEEEECSSC-E-EEECTTSSCEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE---------------------EEEECCCCC-c-EEECCCCCEEEEE
Confidence 45788888777755 689999999988877 455444444 4 9999999988776
Q ss_pred c----------CCCeEEEEECCCCceEEEeecCC------CcceeEEEEecCCCCeEEEEEeC--CCeEEEEeccccCcc
Q 012064 80 S----------DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGV 141 (471)
Q Consensus 80 ~----------~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~ 141 (471)
+ .++.|.+||..+++.+.++..+. ...-..+.|+| ||++++++.. ++.|.++|+.+++.+
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 5 35789999999999888874332 12456789999 9999988864 689999999988776
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCcceeeeee-EEEEEc-CCCCce
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNL-NAIAID-PRNANL 218 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~~~~ 218 (471)
......+. ..+.|.+.+.+++.+.||.+.+.++.+ ++..... ...... ....+ ....|. ++ +++
T Consensus 174 ~tI~v~g~------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--~~~~~~----~~~~~~~~~~~~~~d-G~~ 240 (386)
T 3sjl_D 174 RMLDVPDC------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--TEVFHP----EDEFLINHPAYSQKA-GRL 240 (386)
T ss_dssp EEEECCSE------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE--CCCCSC----TTSCBCSCCEEETTT-TEE
T ss_pred EEEECCCc------ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee--cceecc----ccccccccceeEcCC-CcE
Confidence 65333321 122355546677888899999999976 5542211 111100 00111 123554 55 544
Q ss_pred EEEEeCCCeEEEEEcCCCc--cCCCCCCCCCCCcCCCCcc-cCCCccceEEEEEcCCCCeEEEeeC-----------CcE
Q 012064 219 FAVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYND-----------EFI 284 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-----------~~i 284 (471)
++ .+.+|.+++.|+.... ....... +..... ..-.......++++|+++.++.... +.|
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~------~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDAKFLPAVEA------LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSCEECCCEES------SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred EE-EeCCCEEEEEECCCCcceeecceec------cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 44 5568999999997653 2111110 000000 0001122335777898887766531 358
Q ss_pred EEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc-EEEEe-e
Q 012064 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-S 362 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~-~l~~g-~ 362 (471)
.++|..+.+ .+..+.-.. .+.++.+ ++|++ +|++. .
T Consensus 314 ~viD~~t~k--------------------------------------v~~~i~vg~---~~~~lav-s~D~~~~ly~tn~ 351 (386)
T 3sjl_D 314 VVLDAKTGE--------------------------------------RLAKFEMGH---EIDSINV-SQDEKPLLYALST 351 (386)
T ss_dssp EEEETTTCC--------------------------------------EEEEEEEEE---EECEEEE-CSSSSCEEEEEET
T ss_pred EEEECCCCe--------------------------------------EEEEEECCC---CcceEEE-CCCCCeEEEEEcC
Confidence 899988742 223332211 3778998 99997 66664 4
Q ss_pred CCCeEEEEEccCCeeeEEecCCCcceEEEEEcCC
Q 012064 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396 (471)
Q Consensus 363 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 396 (471)
.++.|.++|..+++.++++..- +..+.+.+++|
T Consensus 352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 5899999999999999888643 34455666665
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=3.7e-15 Score=131.70 Aligned_cols=246 Identities=10% Similarity=0.025 Sum_probs=164.3
Q ss_pred cCCCcceeEEEEecCCCCe-EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEe
Q 012064 101 SGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (471)
Q Consensus 101 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 179 (471)
..+.....+++|+| +++ .++++..++.|..|+..++ .. .+..+...+.+++++|++ +++++...++.|.+||
T Consensus 24 ~~~~~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~~--~~--~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 24 ADGFTWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDGQ--LS--PEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQR 96 (296)
T ss_dssp ECCCSSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTSC--EE--EEESSCSSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred ecCCccccCCeEeC--CCCEEEEEeCCCCEEEEEECCCC--eE--EEECCCCCcceeeECCCC-cEEEEecCCCeEEEEc
Confidence 34555678999999 887 7778888899999998765 32 255566778999999999 5666666678999999
Q ss_pred ccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE----Ee-------------CCCeEEEEEcCCCccCCCC
Q 012064 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV----AG-------------SDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~ 242 (471)
.++++.......... .....+..++++|+ ++++++ |+ ..+.|..++.. ++.
T Consensus 97 ~~~g~~~~~~~~~~~------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---- 164 (296)
T 3e5z_A 97 EPGGEWESIADSFEG------KKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL---- 164 (296)
T ss_dssp STTCCEEEEECEETT------EECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE----
T ss_pred CCCCcEEEEeeccCC------CCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CCE----
Confidence 988875433221100 02234678999998 567776 32 13456666654 221
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCC-CCCCCCCCCCCccccccccccCCCCCCcc
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
.....+......++|+|+++.+++.. ++.|++|++.. +...
T Consensus 165 ------------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------------------------- 207 (296)
T 3e5z_A 165 ------------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------------------------- 207 (296)
T ss_dssp ------------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE-------------------------
T ss_pred ------------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc-------------------------
Confidence 11112234568899999999885555 45899999862 2100
Q ss_pred CCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEE-cCCCCE
Q 012064 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP-HPHSTV 399 (471)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~-s~~~~~ 399 (471)
.....+..+.. .+..+++ +++|++.++. ++.|++||.. ++.+..+..+.. +.+++| +|+++.
T Consensus 208 ----------~~~~~~~~~~~--~p~~i~~-d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 208 ----------YQGVHFTVEPG--KTDGLRV-DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRT 270 (296)
T ss_dssp ----------EEEEEECCSSS--CCCSEEE-BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCE
T ss_pred ----------CCCeEeeCCCC--CCCeEEE-CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCE
Confidence 00111211122 2567888 9999976666 7899999985 788888887777 999999 589998
Q ss_pred EEEeecCCcEEEecCCCCCCc
Q 012064 400 LASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 400 l~s~~~dg~i~iw~~~~~~~~ 420 (471)
|+.++.+ .+.-++..+.+.+
T Consensus 271 L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 271 LYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEEETT-EEEEEECSCCBCC
T ss_pred EEEEcCC-eEEEEEccccccc
Confidence 8888765 4555566554443
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.74 E-value=1.6e-15 Score=131.71 Aligned_cols=224 Identities=8% Similarity=0.067 Sum_probs=163.7
Q ss_pred CCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecccc-ccEEEEEEcCCCCEEEEecCCCeEE
Q 012064 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDRRVI 86 (471)
Q Consensus 8 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~s~~g~~l~s~~~d~~i~ 86 (471)
..++.|++++.|+.|.+||.++|+.+ .++..+. ..+.+++++|+|++|++ .++.|.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~---------------------w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~ 59 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIV---------------------WEYPLEKGWECNSVAATKAGEILFS--YSKGAK 59 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEE---------------------EEEECCTTCCCCEEEECTTSCEEEE--CBSEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEE---------------------EEeCCCccCCCcCeEECCCCCEEEe--CCCCEE
Confidence 35688999999999999999989987 4566555 47889999999999983 467899
Q ss_pred EEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeEEEEeccccCcceeeEee----ceeeeEEEEEEccC
Q 012064 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG----KHQGRAHKLAIEPG 161 (471)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~ 161 (471)
.||. +|+.+.++..+....+.++.+.| +|+.+++.+. ++.+..++. +++.+....+. .+......+++.++
T Consensus 60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 60 MITR-DGRELWNIAAPAGCEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp EECT-TSCEEEEEECCTTCEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred EECC-CCCEEEEEcCCCCccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC
Confidence 9998 89998888543345788999999 9999999887 777777775 44444332221 12223455678888
Q ss_pred CCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCC
Q 012064 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 162 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (471)
+ +++++...++.|..||.+ ++.+..+... ..+.++...++ +++++++..++.|..+|..+++...+
T Consensus 136 G-~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 136 G-NYLVPLFATSEVREIAPN-GQLLNSVKLS-----------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp S-CEEEEETTTTEEEEECTT-SCEEEEEECS-----------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred C-CEEEEecCCCEEEEECCC-CCEEEEEECC-----------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 8 578888899999999998 8888777642 13455677887 67888888888999999998775433
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (471)
..-. ......-..+..+...++|.++++..+
T Consensus 202 ~~~~---------~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 202 VNAN---------DIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp EEGG---------GSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred ecCC---------CCCCccccccccceEcCCCCEEEEecc
Confidence 2100 000011234788889999998888753
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=1.3e-15 Score=136.41 Aligned_cols=266 Identities=10% Similarity=0.018 Sum_probs=178.1
Q ss_pred CCCeEEEEECCCCceEEEeec-----CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 81 DDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
.++.|.++|.++++....+.. ........+.+. +++.+++...++.|.+||..+++.+.. +. .......
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCcE
Confidence 478999999999887554421 122345677774 566777777789999999988877654 33 3456788
Q ss_pred EEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCCeEEEEEcC
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIR 234 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~ 234 (471)
+++++++ +++++...++.|.+||+++++....+....... .......+++ +++.++++.. .++.|.++|..
T Consensus 89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~-----~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM-----ESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp EEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT-----TTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT
T ss_pred EEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc-----cCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC
Confidence 9999988 665555588999999999988776665322000 0012345666 3345555444 48899999999
Q ss_pred CCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC-----------CcEEEEecCCCCCCCCCCCCCc
Q 012064 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----------EFIYLFTQDMGLGPNPPPSSPV 303 (471)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------~~i~i~d~~~~~~~~~~~~~~~ 303 (471)
+.+....... ......+.++|+|++++++.. +.|.++|..+++
T Consensus 161 t~~~~~~i~~----------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---------- 214 (328)
T 3dsm_A 161 TDKVVDELTI----------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---------- 214 (328)
T ss_dssp TTEEEEEEEC----------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----------
T ss_pred CCeEEEEEEc----------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe----------
Confidence 8765432111 112356888999997777653 579999987641
Q ss_pred cccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEE--e
Q 012064 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV--I 381 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~--~ 381 (471)
....+..... .....+++ +|++++|+++.. .|.+||..+++.... +
T Consensus 215 ----------------------------v~~~~~~~~g-~~p~~la~-~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 215 ----------------------------VEKQFKFKLG-DWPSEVQL-NGTRDTLYWINN--DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp ----------------------------EEEEEECCTT-CCCEEEEE-CTTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred ----------------------------EEEEEecCCC-CCceeEEE-ecCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence 1222221111 02678888 999999888765 899999988876421 2
Q ss_pred cCCCcceEEEEEcC-CCCEEEEe----ecCCcEEEecCCCCCC
Q 012064 382 EADRHVVNCIEPHP-HSTVLASS----GIESDIKILTPNAADR 419 (471)
Q Consensus 382 ~~h~~~v~~~~~s~-~~~~l~s~----~~dg~i~iw~~~~~~~ 419 (471)
..+......++++| ++.++++. ..++.|.+|+.+ ++.
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 22245789999999 55566665 578999999998 544
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.72 E-value=1.6e-15 Score=135.50 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=188.0
Q ss_pred EEEcCCCCEEEEecC-----CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe----------CCCeEE
Q 012064 67 VSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVR 131 (471)
Q Consensus 67 ~~~s~~g~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~ 131 (471)
....|+++.++.... ++.|.+.|..+++.+.++..+.. + .++++| |+++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P--~va~sp--DG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P--NPVVAD--DGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C--cEEECC--CCCEEEEEcccccccccCCCCCEEE
Confidence 344789988877655 57999999999999888855443 3 499999 999988775 357899
Q ss_pred EEeccccCcceeeEeec-----eeeeEEEEEEccCCCcEEEEEe-cCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 132 HAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 132 iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
+||..+.+.+....+.. .......+.|+|||++++++.. .++.|.++|+.+++.+..+....
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g------------ 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------------ 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------------
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC------------
Confidence 99999887766533321 0123456899999965444433 36899999999999888775321
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccce-EEEEE-cCCCCeEEEeeCC
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAF-SDQSELLVSYNDE 282 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-~~~~~~l~~~~~~ 282 (471)
+....|.+...+++.+.||.+.+.++.. ++..... . ..+.....++ ....| .++|+++....++
T Consensus 181 --~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--~---------~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g 247 (386)
T 3sjl_D 181 --CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--T---------EVFHPEDEFLINHPAYSQKAGRLVWPTYTG 247 (386)
T ss_dssp --EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE--C---------CCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred --cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee--c---------ceeccccccccccceeEcCCCcEEEEeCCC
Confidence 1112244456677777888888888875 3321100 0 0000001111 12355 4788777766688
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee--------cCCceeEeeeeeeeCCC
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--------GHRNCVTVKGVNFFGPK 354 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~s~~ 354 (471)
.+++.|..+..... ...+. ....+.....+.+ +++
T Consensus 248 ~V~v~d~~~~~~~v------------------------------------~~~~~~~~~~~~~~g~~p~g~q~~a~-~~~ 290 (386)
T 3sjl_D 248 KIHQIDLSSGDAKF------------------------------------LPAVEALTEAERADGWRPGGWQQVAY-HRA 290 (386)
T ss_dssp EEEEEECTTSSCEE------------------------------------CCCEESSCHHHHHTTEEECSSSCEEE-ETT
T ss_pred EEEEEECCCCccee------------------------------------ecceeccccccccccccCCCcceeeE-CCC
Confidence 99999987542110 00000 0000011334666 888
Q ss_pred CcEEEEeeC----------CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEe-ecCCcEEEecCCCCCCc
Q 012064 355 CEYVVSGSD----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRA 420 (471)
Q Consensus 355 g~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~~ 420 (471)
++.++.... .+.|.++|+++++.+..+... ..+..+++++|++ +|+++ ..++.|.++|..+++..
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 888877542 257999999999999887643 3788999999997 66665 45899999999998763
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.71 E-value=2.3e-13 Score=120.39 Aligned_cols=281 Identities=9% Similarity=0.009 Sum_probs=187.4
Q ss_pred cccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecccc
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 138 (471)
.....+.+++++++|+++++...++.|.+||.. ++............+.++++.+ ++..+++...++.|..+|.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence 345678999999999988887778999999987 6553322233446788999998 89888877778899999976 4
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
+. ...........+.++++.+++ .++++...++.|..+|.. ++.. .+.... ....+..++++++ +++
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~~d~~-g~l 159 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLPN--------KGSYPAFITLGSD-NAL 159 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECSS--------TTCCEEEEEECTT-SSE
T ss_pred Ce-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCCC--------CCCCceeEEECCC-CCE
Confidence 33 222222233568899999988 566666667899999987 5433 222110 1235789999998 566
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP 297 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~ 297 (471)
.++...++.|..||. +++... .........+..++++++|+++++.. .+.|..|+.... .
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~--------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~--- 220 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEE--------------YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-I--- 220 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEE--------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-E---
T ss_pred EEEecCCCeEEEECC-CCcEEE--------------eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-E---
Confidence 666666788999998 433211 00112234578999999998777665 457999987321 0
Q ss_pred CCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee
Q 012064 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (471)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~ 377 (471)
.......... .+.++++ +++|++.++...++.|..||. +++.
T Consensus 221 ----------------------------------~~~~~~~~~~--~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 221 ----------------------------------SEYDIPTPNA--RPHAITA-GKNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp ----------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred ----------------------------------EEEECCCCCC--CceEEEE-CCCCCEEEeccCCCeEEEECC-CCcE
Confidence 0001111122 2678888 999987776666789999998 4543
Q ss_pred eE-EecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 378 IR-VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 378 ~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
.. .+......+.+++++++|+++++.. . .|..++++
T Consensus 263 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 263 QEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 32 2333445688999999999777665 4 67666653
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=1.8e-14 Score=129.70 Aligned_cols=238 Identities=11% Similarity=0.025 Sum_probs=153.2
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
++++++++++++++..++.|.+||.++++.. .....+...+.+++++|+|+++++...+
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------~~~~~~~~~~~~i~~~~dg~l~v~~~~~ 107 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------RPFVSHKANPAAIKIHKDGRLFVCYLGD 107 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------EEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------EEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence 3467789998888899999999999977654 1222456789999999999988877666
Q ss_pred ----CeEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeC------CCeEEEEeccccCcceeeEeeceee
Q 012064 83 ----RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 83 ----~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
+.|.+||..++.....+. ..+...+.+++++| +++.+++... .+.|..++...++... +.....
T Consensus 108 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~ 182 (333)
T 2dg1_A 108 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP---IIQNIS 182 (333)
T ss_dssp SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE---EEEEES
T ss_pred CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE---eecCCC
Confidence 689999988776543331 13445789999999 9988777653 2455555544333221 223344
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
.+..++|+|++..++++.+.++.|.+||+++ +.....+......... ....+..++++++ ++++++...++.|.+
T Consensus 183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~~~i~~d~~-G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT---GHEGPDSCCIDSD-DNLYVAMYGQGRVLV 258 (333)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC---SSSEEEEEEEBTT-CCEEEEEETTTEEEE
T ss_pred cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC---CCCCCCceEECCC-CCEEEEEcCCCEEEE
Confidence 5788999999855556666788999999964 3332222100000000 0124678999998 567777667889999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
||... +....... .....++...+.+++|+|+++.|+.++
T Consensus 259 ~d~~g-~~~~~~~~---------~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 259 FNKRG-YPIGQILI---------PGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp ECTTS-CEEEEEEC---------TTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred ECCCC-CEEEEEEc---------CCCccccccCcceEEECCCCCEEEEEe
Confidence 99843 22111000 000001122578899999987665444
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=2.9e-15 Score=132.41 Aligned_cols=232 Identities=11% Similarity=0.060 Sum_probs=158.7
Q ss_pred CCCCCCCCc-EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 3 DASNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 3 ~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
.+.++|+++ +++++..++.|..|+.+++ . +.+..+...+.+++++|+|+++++...
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---------------------~~~~~~~~~~~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---------------------SPEMHPSHHQNGHCLNKQGHLIACSHG 88 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--E---------------------EEEESSCSSEEEEEECTTCCEEEEETT
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--e---------------------EEEECCCCCcceeeECCCCcEEEEecC
Confidence 356778887 7888889999999999965 3 345556778999999999998888777
Q ss_pred CCeEEEEECCCCceEEEeec--C-CCcceeEEEEecCCCCeEEEEEeC-----------------CCeEEEEeccccCcc
Q 012064 82 DRRVILWDWKTERVKLSFHS--G-HNDNVFQAKIMPFTDDRSIVTCAA-----------------DGQVRHAQILERGGV 141 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~ 141 (471)
++.|.+||..+++....... + ....+..++++| +|+++++.+. .+.|..++.. ...
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~ 164 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTL 164 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCE
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCE
Confidence 78999999988875433211 1 123467899999 9998887321 2345445443 222
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEecc-CCcc-ceeeeecccCCcCcceeeeeeEEEEEcCCCCceE
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (471)
. .+..+......++|+|++. .+++.+.++.|.+||+. +++. ...... .. ....+..++++++ +++.
T Consensus 165 ~--~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~-------~~~~p~~i~~d~~-G~l~ 232 (296)
T 3e5z_A 165 S--APIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHF-TV-------EPGKTDGLRVDAG-GLIW 232 (296)
T ss_dssp E--EEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEE-CC-------SSSCCCSEEEBTT-SCEE
T ss_pred E--EeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC-------CCCCCCeEEECCC-CCEE
Confidence 2 2444556678999999995 45777888999999997 4443 111111 11 1224567999998 5555
Q ss_pred EEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEE-cCCCCeEEEeeCCcEEEEecCCC
Q 012064 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF-SDQSELLVSYNDEFIYLFTQDMG 292 (471)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~i~i~d~~~~ 292 (471)
++. ++.|.+||... +.. .....+.. +.+++| .|+++.|+.++.+.+..++..+.
T Consensus 233 v~~--~~~v~~~~~~g-~~~---------------~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~ 287 (296)
T 3e5z_A 233 ASA--GDGVHVLTPDG-DEL---------------GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVR 287 (296)
T ss_dssp EEE--TTEEEEECTTS-CEE---------------EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCC
T ss_pred EEc--CCeEEEECCCC-CEE---------------EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccc
Confidence 544 78899999863 321 11122233 788899 68999898888888888887664
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=1.5e-13 Score=121.45 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=160.8
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
++..+++++.++...++.|.+||.+ ++... ..+..+...+.+++++++|.++++...++
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~--------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITE--------------------YPLPTPDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEE--------------------EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEE--------------------ecCCcccCceeeEEECCCCCEEEeCCCCC
Confidence 4567888888777778999999988 65431 11223456789999999999888877788
Q ss_pred eEEEEECCCCceEEEee-cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCC
Q 012064 84 RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (471)
.|..||.. ++. ..+. ......+.++++.| ++..+++...++.|..||. +++.. ..........+.++++.+++
T Consensus 79 ~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 79 KIGRITKK-GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp EEEEECTT-SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTS
T ss_pred eEEEECCC-CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCC
Confidence 99999976 443 2331 23455788999999 8988888777889999998 44332 21122334568899999998
Q ss_pred CcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 163 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
+++++...++.|..||. +++... +.... ....+..++++++ +.+.++...++.|..||. +++...
T Consensus 153 -~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~--------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~-- 217 (299)
T 2z2n_A 153 -ALWFTENQNNAIGRITE-SGDITE-FKIPT--------PASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEITE-- 217 (299)
T ss_dssp -CEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE--
T ss_pred -CEEEEeCCCCEEEEEcC-CCcEEE-eeCCC--------CCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEEE--
Confidence 56666666789999998 555432 21110 1234678999998 566666666789999998 543211
Q ss_pred CCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEec
Q 012064 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~ 289 (471)
.........+.+++++++|+++++.. ++.|..||.
T Consensus 218 ------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 218 ------------FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp ------------EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred ------------EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 00112345688999999998776663 678999997
No 196
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.69 E-value=2.4e-14 Score=130.31 Aligned_cols=290 Identities=14% Similarity=0.102 Sum_probs=186.8
Q ss_pred CCCCcEEEEecC-C----CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec-
Q 012064 7 NNNNKRARTSVD-K----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS- 80 (471)
Q Consensus 7 ~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~- 80 (471)
+++++++++... + +.|.+.|..+++.+ .++..-..+ .++++|||++|+.+.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv---------------------~~I~vG~~P--gia~SpDgk~lyVan~ 137 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRIL---------------------GMTDGGFLP--HPVAAEDGSFFAQAST 137 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEE---------------------EEEEECSSC--EEEECTTSSCEEEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEE---------------------EEEECCCCC--ceEECCCCCEEEEEec
Confidence 456666665544 2 79999999988877 344433445 799999999888775
Q ss_pred ---------CCCeEEEEECCCCceEEEeecC------CCcceeEEEEecCCCCeEEEEEeC--CCeEEEEeccccCccee
Q 012064 81 ---------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET 143 (471)
Q Consensus 81 ---------~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~ 143 (471)
.++.|.++|..+++.+.++..+ ....-..+.|+| |+++++++.. ++.|.+.|+.+.+.+..
T Consensus 138 ~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 138 VFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred cccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence 3678999999999988877432 113456789999 9999998874 57899999988876655
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
..+.+. ....|+++..+++.+.||.+.+.+..+++...... ....... . .....+.+.+++ ..++...
T Consensus 216 I~v~g~------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~~~~v~~--~-p~~~~~~~~~dg-~~~~~~s 283 (426)
T 3c75_H 216 LDVPDC------YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT--EVFHTED--E-LLINHPAFSLRS-GRLVWPT 283 (426)
T ss_dssp EECCSE------EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC--CCCSCTT--S-CBCSCCEECTTT-CEEEEEB
T ss_pred EEcCCc------eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee--eeeccCC--C-ceeeEeeecCCC-CEEEEEe
Confidence 333221 33455555677778888888888886655442211 0000000 0 011235678885 4554556
Q ss_pred CCCeEEEEEcCCCccC--CCCCCCCCCCcCCCCcc-cCCCccceEEEEEcCCCCeEEEee-----------CCcEEEEec
Q 012064 224 SDEYTRLYDIRKYKWD--GSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQ 289 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-----------~~~i~i~d~ 289 (471)
..+.+.+.|....... ....... .... ..........++++|+++.++... .+.|.++|.
T Consensus 284 ~~g~V~ViD~~~~~~~v~~~~~~~~------~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 284 YTGKIFQADLTAEGATFRAPIEALT------EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp TTSEEEEEEECSSCEEECCCEESSC------TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred CCCcEEEEeccCCceEEeeeeeecc------ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 7889999998654321 1100000 0000 000011122368999988766543 236999998
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCc-EEEEee-CCCeE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRI 367 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~-~l~~g~-~dg~v 367 (471)
.+. +.+..+.... ....+.| +|||+ ++++.. .++.|
T Consensus 358 ~T~--------------------------------------kvv~~I~vg~---~P~gia~-spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 358 ETG--------------------------------------ERINKIELGH---EIDSINV-SQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp TTC--------------------------------------CEEEEEEEEE---EECEEEE-CCSSSCEEEEEETTTTEE
T ss_pred CCC--------------------------------------eEEEEEECCC---CcCeEEE-ccCCCEEEEEEcCCCCeE
Confidence 874 2333333221 2678888 99999 888877 58999
Q ss_pred EEEEccCCeeeEEe
Q 012064 368 FIWKKKGGELIRVI 381 (471)
Q Consensus 368 ~iwd~~~~~~~~~~ 381 (471)
.++|+.+++.++++
T Consensus 396 sVID~~t~kvv~tI 409 (426)
T 3c75_H 396 HIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEe
Confidence 99999999999887
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=1.3e-14 Score=126.27 Aligned_cols=242 Identities=9% Similarity=0.012 Sum_probs=160.7
Q ss_pred ceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc
Q 012064 106 NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (471)
...++++.| +++.++ +...++.|..|+..+...... ...+...+.++++++++ +++++.. ++.|..||.....
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSSSCEEEEECC-----EEC--CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECC--CCCEEEEccCCCCcEEEecCCCcccceE--eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence 667899999 888777 546788999998755432211 12233467889999998 4555555 8899999987654
Q ss_pred cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccce
Q 012064 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (471)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (471)
.. .+... ....+..++++|+ +.++++...++.|.+|+..+..... ........+
T Consensus 99 ~~-~~~~~---------~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~p 152 (270)
T 1rwi_B 99 QT-VLPFD---------GLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTV---------------LPFTGLNDP 152 (270)
T ss_dssp CE-ECCCC---------SCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCEE---------------CCCCSCCSC
T ss_pred Ee-eeecC---------CcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeEe---------------eccccCCCc
Confidence 32 11110 1235789999998 5677776778899999755432110 011112346
Q ss_pred EEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCcee
Q 012064 265 TGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (471)
Q Consensus 265 ~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (471)
..++++|+|+++++.. ++.|.+|+....... .....+..
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~--------------------------------------~~~~~~~~-- 192 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV--------------------------------------VLPFTDIT-- 192 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCEE--------------------------------------ECCCSSCC--
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCceE--------------------------------------eecccCCC--
Confidence 7899999998776665 568999997653110 00011111
Q ss_pred EeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 344 ~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
.+..+++ +++|+++++...++.|++||............+...+.+++++|+|+++++...+++|+++++...+..
T Consensus 193 ~p~~i~~-d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 193 APWGIAV-DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp SEEEEEE-CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred CceEEEE-CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 2678888 999987777777889999998665443322233457899999999998888889999999999876543
No 198
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=7.2e-15 Score=146.14 Aligned_cols=241 Identities=9% Similarity=-0.007 Sum_probs=160.5
Q ss_pred CCCCCCCCcEEEEecCCC-----eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE
Q 012064 3 DASNNNNNKRARTSVDKA-----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 77 (471)
.+++||||++||.+..++ .|++||+++|+... ..+. ...+..++|+|||+.|+
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--------------------~~~~--~~~~~~~~wspDg~~l~ 186 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--------------------DVLE--RVKFSCMAWTHDGKGMF 186 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--------------------EEEE--EECSCCEEECTTSSEEE
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--------------------cccc--CcccceEEEEeCCCEEE
Confidence 357899999998776544 89999999888662 1121 12366899999999999
Q ss_pred EecCCCe----------------EEEEECCCCceE--EEee-cCCCcceeEEEEecCCCCeEEEEEeC-----CCeEEEE
Q 012064 78 SGSDDRR----------------VILWDWKTERVK--LSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHA 133 (471)
Q Consensus 78 s~~~d~~----------------i~iwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iw 133 (471)
.++.++. |++|++.+++.. ..+. ..|...+..+.|+| ||++|+..+. +..|.+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~ 264 (710)
T 2xdw_A 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYC 264 (710)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEE
Confidence 8887765 999999887631 2221 23455678999999 9999987765 5689999
Q ss_pred eccc------cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC---CeEEEEeccCCcc--ceeeeecccCCcCccee
Q 012064 134 QILE------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAA--TELFTCRPIDDRRNYMT 202 (471)
Q Consensus 134 d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~ 202 (471)
|+.+ +.... ..+..+...+.. .|+|++..+++.+..+ +.|.+||+.++.. ...+.... .
T Consensus 265 d~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------~ 334 (710)
T 2xdw_A 265 DLQQESNGITGILKW-VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--------E 334 (710)
T ss_dssp EGGGSSSSSCSSCCC-EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--------S
T ss_pred ECcccccccCCccce-EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC--------C
Confidence 9976 43211 224555555544 4888886655555433 3799999988753 12222110 1
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCe--EEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe-
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY- 279 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 279 (471)
...+..++|+++ +.++++...++. |++|++.+++.. ..+..+...+..++++|++..++..
T Consensus 335 ~~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~---------------~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 335 KDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALL---------------KIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp SCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEE---------------EEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred CCeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEE---------------EecCCCCceEEEEecCCCCCEEEEEE
Confidence 125778888865 678888888885 556676454321 1122235678889999998765533
Q ss_pred e----CCcEEEEecCCCC
Q 012064 280 N----DEFIYLFTQDMGL 293 (471)
Q Consensus 280 ~----~~~i~i~d~~~~~ 293 (471)
+ .+.++.||+.++.
T Consensus 399 ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 399 TSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ECSSCCCEEEEEETTSSS
T ss_pred eCCCCCCEEEEEECCCCc
Confidence 2 2379999987754
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=3.8e-14 Score=123.37 Aligned_cols=240 Identities=11% Similarity=0.024 Sum_probs=159.8
Q ss_pred cEEEEEEcCCCCEEE-EecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc
Q 012064 63 CVNTVSFNTDGDILI-SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 141 (471)
...+++++++|++++ +...++.|.+||..++.. ..+...+...+.++++.+ +++.+++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 557788999999765543 222223445678899999 888666655 889999997654432
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
.. .......+.++++++++ +++++...++.|.+|+..+......... ....+.+++++|+ ++++++
T Consensus 101 ~~--~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~p~~i~~~~~-g~l~v~ 166 (270)
T 1rwi_B 101 VL--PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFT----------GLNDPDGVAVDNS-GNVYVT 166 (270)
T ss_dssp EC--CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCC----------SCCSCCCEEECTT-CCEEEE
T ss_pred ee--ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccc----------cCCCceeEEEeCC-CCEEEE
Confidence 11 11223568899999998 5777777788999997655433211100 1224678999998 567777
Q ss_pred EeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCC
Q 012064 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS 300 (471)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~ 300 (471)
...++.|.+||........ ........+..++++++|.++++.. ++.|.+|+.......
T Consensus 167 ~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~----- 226 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQVV---------------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST----- 226 (270)
T ss_dssp EGGGTEEEEECTTTCCEEE---------------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-----
T ss_pred ECCCCEEEEEecCCCceEe---------------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-----
Confidence 6678899999987654211 0011124578999999997766665 568999997653110
Q ss_pred CCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
.....+.. .+.++++ +++|+++++...++.|+++++...+
T Consensus 227 ---------------------------------~~~~~~~~--~p~~i~~-~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 227 ---------------------------------VLPFTGLN--TPLAVAV-DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---------------------------------ECCCCSCS--CEEEEEE-CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ---------------------------------eeccCCCC--CceeEEE-CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 00011111 2678888 9999988888889999999986554
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=6.9e-14 Score=139.64 Aligned_cols=251 Identities=10% Similarity=0.060 Sum_probs=150.2
Q ss_pred cccccEEEEEEcCCCCEEEEecCC-----CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCe----
Q 012064 59 KHRGCVNTVSFNTDGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---- 129 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---- 129 (471)
+|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+| | +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wsp--D-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLG--N-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEEST--T-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEEC--C-CEEEEEEecCccccc
Confidence 344578899999999999977553 46999999999875432 1222346789999 9 88888776553
Q ss_pred ----------EEEEeccccCcceeeEeec--eeeeEEEEEEccCCCcEEEEEec----CCeEEEEeccCC--ccceeeee
Q 012064 130 ----------VRHAQILERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGE----DGLVQHFDLRTG--AATELFTC 191 (471)
Q Consensus 130 ----------i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~ 191 (471)
|++|++.++.......+.. +...+..+.|+|+|+.+++++.. ...|++||+.++ +....+..
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 8899987665322222322 22357899999999654444432 248999998876 31222221
Q ss_pred cccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC----CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEE
Q 012064 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (471)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (471)
. ....... ++|+ +..|+..+.+ +.|.+||+.+.. ...
T Consensus 315 ~----------~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~------------------------~~~--- 355 (741)
T 1yr2_A 315 D----------LKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGST------------------------PRF--- 355 (741)
T ss_dssp S----------SSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSS------------------------CEE---
T ss_pred C----------CCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCc------------------------ccc---
Confidence 1 0111222 2355 3444444332 235555543310 000
Q ss_pred EEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeee
Q 012064 268 AFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG 347 (471)
Q Consensus 268 ~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (471)
...+..+... +..
T Consensus 356 -----------------------------------------------------------------~~l~~~~~~~--l~~ 368 (741)
T 1yr2_A 356 -----------------------------------------------------------------DTVVPESKDN--LES 368 (741)
T ss_dssp -----------------------------------------------------------------EEEECCCSSE--EEE
T ss_pred -----------------------------------------------------------------EEEecCCCCe--EEE
Confidence 0011111111 445
Q ss_pred eeeeCCCCcEEEEeeCCCeEEEEEcc-CCeeeEEecC-CCcceEEEEEcCCCCEEE----EeecCCcEEEecCCCCCCcc
Q 012064 348 VNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEA-DRHVVNCIEPHPHSTVLA----SSGIESDIKILTPNAADRAT 421 (471)
Q Consensus 348 ~~~~s~~g~~l~~g~~dg~v~iwd~~-~~~~~~~~~~-h~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~~~~ 421 (471)
+.+ + ++.++++...|+..+||.+. +++....+.. +.+.+..++++|+++.|+ +....++|++||+.+++...
T Consensus 369 ~~~-~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 369 VGI-A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp EEE-E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred EEE-E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 566 4 56677888888887777554 4566666654 356789999999988555 22345889999998876543
Q ss_pred c
Q 012064 422 L 422 (471)
Q Consensus 422 ~ 422 (471)
+
T Consensus 447 l 447 (741)
T 1yr2_A 447 W 447 (741)
T ss_dssp C
T ss_pred E
Confidence 3
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=1.1e-12 Score=115.88 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=159.7
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
+...+++++.++...++.|.+|+.+ ++... ..+..+...+.+++++++|+++++...++
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKE--------------------FEVPTPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEE--------------------EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEE--------------------EECCCCCCcceeEEECCCCCEEEEecCCC
Confidence 4456788888877778999999988 65441 11223446789999999999888877788
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
.|..||.. ++............+.++++.+ +++.+++...++.|..++.. ++.. ...+......+.++++.+++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g- 157 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDN- 157 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTS-
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCC-
Confidence 99999987 6653222223446788999998 89888887778899999876 3332 21223234568899999998
Q ss_pred cEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCC
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (471)
+++++...++.|..+|. +++... +.... ....+..++++++ +.+.++....+.|..||. +++...
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~--------~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~--- 222 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLEE-YPLPT--------NAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISE--- 222 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE---
T ss_pred CEEEEecCCCeEEEECC-CCcEEE-eeCCC--------CCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEE---
Confidence 46666666789999998 554332 22110 1235788999998 566666666778999998 332110
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecC
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~ 290 (471)
.........+.+++++++|+++++.. ++.|..|+..
T Consensus 223 -----------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 223 -----------YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp -----------EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred -----------EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 00112234578999999998766654 5689999873
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=5.7e-15 Score=146.42 Aligned_cols=237 Identities=14% Similarity=0.046 Sum_probs=155.8
Q ss_pred CCCCCCCCcEEE-----EecCCCeEEEEEcccCccc-cccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEE
Q 012064 3 DASNNNNNKRAR-----TSVDKALVDVWLRELGQLS-TRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL 76 (471)
Q Consensus 3 ~~~~~~~~~~l~-----~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l 76 (471)
.+++||||++|| .|+++.+|++||+++|+.+ . ..+.... ...++|+|||+.|
T Consensus 125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--------------------~~~~~~~--~~~~~wspDg~~l 182 (695)
T 2bkl_A 125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--------------------DVIEGGK--YATPKWTPDSKGF 182 (695)
T ss_dssp EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--------------------CCBSCCT--TCCCEECTTSSEE
T ss_pred EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--------------------cccCccc--ccceEEecCCCEE
Confidence 357899999999 5666689999999988865 1 0111111 1578999999999
Q ss_pred EEecCCCe-------------EEEEECCCCce--EEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCC----eEEEEecc
Q 012064 77 ISGSDDRR-------------VILWDWKTERV--KLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG----QVRHAQIL 136 (471)
Q Consensus 77 ~s~~~d~~-------------i~iwd~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~ 136 (471)
+.++.|.. |++|++.+++. ...+ ...|...+..+.|+| ||++|+..+.++ .|.+|+..
T Consensus 183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTT
T ss_pred EEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCC
Confidence 99888765 99999988762 1222 134556788999999 999998877665 66666654
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe---cCCeEEEEeccCCccc--eeeeecccCCcCcceeeeeeEEEEE
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+++.. .+..+...+....+ +++. +++.+. .++.|.+||+.+++.. ..+.... ....+..+++
T Consensus 261 ~~~~~---~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------~~~~l~~~~~ 327 (695)
T 2bkl_A 261 EKDFR---LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--------SSASLLSVSI 327 (695)
T ss_dssp CSSCE---EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC--------SSCEEEEEEE
T ss_pred CCceE---EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC--------CCCeEEEEEE
Confidence 44322 24445555555556 6775 555554 2588999999887531 2222110 1234677888
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe-e----CCcEE
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N----DEFIY 285 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~----~~~i~ 285 (471)
+ + +.++++...|+..++|.+.. ++.. ..+.......+..++++|+++.++.. + .++++
T Consensus 328 ~-~-~~lv~~~~~dg~~~l~~~~~~g~~~--------------~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~ 391 (695)
T 2bkl_A 328 V-G-GHLSLEYLKDATSEVRVATLKGKPV--------------RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIY 391 (695)
T ss_dssp E-T-TEEEEEEEETTEEEEEEEETTCCEE--------------EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred E-C-CEEEEEEEECCEEEEEEEeCCCCee--------------EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 7 3 67888999999888886652 2111 11111224567778899998766533 2 23699
Q ss_pred EEecCCC
Q 012064 286 LFTQDMG 292 (471)
Q Consensus 286 i~d~~~~ 292 (471)
+||+.++
T Consensus 392 ~~d~~~g 398 (695)
T 2bkl_A 392 KTSVSTG 398 (695)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9998775
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=6.1e-13 Score=118.53 Aligned_cols=251 Identities=16% Similarity=0.171 Sum_probs=159.2
Q ss_pred ccccccEEEEEEcCCCCEEEE-------ecCCCeEEEEECCCCceEEEee---cCCCcceeEEEEecCCC-CeEEEEEeC
Q 012064 58 DKHRGCVNTVSFNTDGDILIS-------GSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTD-DRSIVTCAA 126 (471)
Q Consensus 58 ~~h~~~V~~~~~s~~g~~l~s-------~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~~~l~s~~~ 126 (471)
...-....+++|+++|.++++ +..++.|.+||..+++...... .++...+.++++++ + ++.+++..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--~~g~l~v~~~- 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADM- 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEET-
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--CCCcEEEEEC-
Confidence 334455689999999998888 6778899999988877632221 12446788999998 8 66555554
Q ss_pred CCeEEEEeccccCccee-eEe--eceeeeEEEEEEccCCCcEEEEEecC---------------CeEEEEeccCCcccee
Q 012064 127 DGQVRHAQILERGGVET-KLL--GKHQGRAHKLAIEPGSPHVFYTCGED---------------GLVQHFDLRTGAATEL 188 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~ 188 (471)
.+.|.+||.. ++.... ... ......+.++++++++ +++++...+ +.|..||.. ++....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 4478889986 443211 000 0112457899999998 565655444 466666655 433222
Q ss_pred eeecccCCcCcceeeeeeEEEEEc----CCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccc
Q 012064 189 FTCRPIDDRRNYMTVVNLNAIAID----PRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
.. .......++++ |++..++++...++.|.+||... ++
T Consensus 168 ~~-----------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~-------------------------- 210 (314)
T 1pjx_A 168 DT-----------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-------------------------- 210 (314)
T ss_dssp EE-----------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE--------------------------
T ss_pred cc-----------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc--------------------------
Confidence 11 12234677777 77323344444567777777641 11
Q ss_pred eEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCC-ce
Q 012064 264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-NC 342 (471)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 342 (471)
+... ..+ ..+.++. .
T Consensus 211 ~~~~-----------------~~~----------------------------------------------~~~~~~~~~- 226 (314)
T 1pjx_A 211 IENK-----------------KVW----------------------------------------------GHIPGTHEG- 226 (314)
T ss_dssp EEEE-----------------EEE----------------------------------------------EECCCCSSC-
T ss_pred cccc-----------------eEE----------------------------------------------EECCCCCCC-
Confidence 0000 000 0001111 1
Q ss_pred eEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEeecCCcEEEecCCCC
Q 012064 343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA 417 (471)
Q Consensus 343 ~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 417 (471)
....+++ +++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++++...++.|..|++...
T Consensus 227 -~p~~i~~-d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 227 -GADGMDF-DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp -EEEEEEE-BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred -CCCceEE-CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 1556777 99999888877789999999987877777777767899999999999 4555556789999998753
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=8.1e-13 Score=114.66 Aligned_cols=190 Identities=9% Similarity=0.058 Sum_probs=137.3
Q ss_pred CCCEEEEecCCCeEEEEECCCCceEEEeecCCC-cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeece-
Q 012064 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH- 149 (471)
Q Consensus 72 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~- 149 (471)
.+++|++++.++.|.+||.++|+.+.++. .+. ..+.++.++| +|+.++ +.++.|..||. +++.+.. +..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~p--dG~ilv--s~~~~V~~~d~-~G~~~W~--~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATK--AGEILF--SYSKGAKMITR-DGRELWN--IAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECT--TSCEEE--ECBSEEEEECT-TSCEEEE--EECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECC--CCCEEE--eCCCCEEEECC-CCCEEEE--EcCCC
Confidence 46789999999999999999999998884 443 5788999999 999888 34678999998 6665544 3332
Q ss_pred eeeEEEEEEccCCCcEEEEEec-CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeE
Q 012064 150 QGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (471)
Q Consensus 150 ~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (471)
...+.++.+.+++ +++++.+. ++.+..+|. +++.+..+....... . .......+++.++ ++++++...++.|
T Consensus 76 ~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~--~--~~~~~~~v~~~~~-G~~lv~~~~~~~v 148 (276)
T 3no2_A 76 GCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE--R--PHAQFRQINKNKK-GNYLVPLFATSEV 148 (276)
T ss_dssp TCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS--S--GGGSCSCCEECTT-SCEEEEETTTTEE
T ss_pred CccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC--c--ccccccCceECCC-CCEEEEecCCCEE
Confidence 2468889999999 46676666 778888886 677666665432110 0 1113445567887 6899999999999
Q ss_pred EEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCC
Q 012064 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGL 293 (471)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~ 293 (471)
..||.. ++....... .....++...++|++++++.++ .+..+|..+++
T Consensus 149 ~~~d~~-G~~~w~~~~----------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 149 REIAPN-GQLLNSVKL----------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EEECTT-SCEEEEEEC----------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EEECCC-CCEEEEEEC----------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 999987 664432111 1234457778999998887755 79999988764
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=1e-12 Score=117.05 Aligned_cols=242 Identities=8% Similarity=0.032 Sum_probs=156.2
Q ss_pred CCCCCCCCcEEEE-------ecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC-CC
Q 012064 3 DASNNNNNKRART-------SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GD 74 (471)
Q Consensus 3 ~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~-g~ 74 (471)
++++++++.++++ +..++.|.+||..+++... +.. ....++...+.+++++++ |+
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~----------------~~~-~~~~~~~~~~~~i~~~~~~g~ 84 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV----------------ICK-PEVNGYGGIPAGCQCDRDANQ 84 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE----------------EEC-CEETTEECCEEEEEECSSSSE
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE----------------EEe-cccCCCCCCCceEEEecCCCc
Confidence 3456788888877 6778999999988776541 000 011235577899999999 77
Q ss_pred EEEEecCCCeEEEEECCCCceEEEe-ecC----CCcceeEEEEecCCCCeEEEEEeCC---------------CeEEEEe
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSF-HSG----HNDNVFQAKIMPFTDDRSIVTCAAD---------------GQVRHAQ 134 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iwd 134 (471)
++++... +.|.+||.+ ++.. .+ ... ....+.++++.| +++.+++...+ +.|..|+
T Consensus 85 l~v~~~~-~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 85 LFVADMR-LGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp EEEEETT-TEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred EEEEECC-CCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 6665544 479999988 6653 32 221 123588999999 99888777655 4566666
Q ss_pred ccccCcceeeEeeceeeeEEEEEEc----cCCCcEEEEEecCCeEEEEecc-CCccceeeeecccCCcCcceee-eeeEE
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTV-VNLNA 208 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 208 (471)
.. ++. .. +..+......++++ |+++.++++...++.|.+||++ +++........... . +. ..+..
T Consensus 160 ~~-g~~-~~--~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---~--~~~~~p~~ 230 (314)
T 1pjx_A 160 TD-GQM-IQ--VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP---G--THEGGADG 230 (314)
T ss_dssp TT-SCE-EE--EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC---C--CSSCEEEE
T ss_pred CC-CCE-EE--eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC---C--CCCCCCCc
Confidence 54 322 21 23344456889999 9885455555678899999987 34321110110000 0 11 34678
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYL 286 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i 286 (471)
++++++ ++++++...++.|..||..+++.... ...+...+.+++++|+++.|..++ ++.|..
T Consensus 231 i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~---------------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 231 MDFDED-NNLLVANWGSSHIEVFGPDGGQPKMR---------------IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEBTT-CCEEEEEETTTEEEEECTTCBSCSEE---------------EECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEE---------------EeCCCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence 999998 57777766788999999875542211 112235688999999999665554 348999
Q ss_pred EecCC
Q 012064 287 FTQDM 291 (471)
Q Consensus 287 ~d~~~ 291 (471)
|++..
T Consensus 295 ~~~~~ 299 (314)
T 1pjx_A 295 FEWQR 299 (314)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 99864
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=4.2e-13 Score=122.16 Aligned_cols=290 Identities=13% Similarity=0.083 Sum_probs=181.6
Q ss_pred CCCCEEEEecC-C----CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe----------CCCeEEEEec
Q 012064 71 TDGDILISGSD-D----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQI 135 (471)
Q Consensus 71 ~~g~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~ 135 (471)
++++.+++... + +.|.++|..+++.+.++..+. .+ .+.++| |+++++++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46665555444 2 699999999999998886554 34 899999 999988876 3678999999
Q ss_pred cccCcceeeEeece-----eeeEEEEEEccCCCcEEEEEe-c-CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEE
Q 012064 136 LERGGVETKLLGKH-----QGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 136 ~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.+.+.+....+.+. ......+.|+|++++ ++++. . ++.|.++|+.+++.+..+.... +
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~-lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------~ 221 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN-LLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------C 221 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE-EEEEECSSSCEEEEEETTTTEEEEEEECCS--------------E
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCE-EEEEecCCCCeEEEEECCCCeEEEEEEcCC--------------c
Confidence 88877655333200 123456899999965 45544 3 6899999999999887765321 1
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEE
Q 012064 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~ 287 (471)
....|++...+++.+.||.+.+.+...++...... . .+..........+.+.+++..++..+ .+.+++.
T Consensus 222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-----~-----~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~Vi 291 (426)
T 3c75_H 222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-----E-----VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQA 291 (426)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-----C-----CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEE
T ss_pred eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-----e-----eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEE
Confidence 22334434556666677777777774443221000 0 00000000112346788877655444 6689999
Q ss_pred ecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC----
Q 012064 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---- 363 (471)
Q Consensus 288 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~---- 363 (471)
|.........-. ... .. ............ ...+.+ +|+++.+++...
T Consensus 292 D~~~~~~~v~~~-~~~------------------~~----~~~i~~g~~p~g-----~~~va~-s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 292 DLTAEGATFRAP-IEA------------------LT----EAERADDWRPGG-----WQQTAY-HRQSDRIYLLVDQRDE 342 (426)
T ss_dssp EECSSCEEECCC-EES------------------SC----TTTGGGTEEECS-----SSCEEE-EGGGTEEEEEEEECCT
T ss_pred eccCCceEEeee-eee------------------cc----ccccccccccCC-----ceeeEE-cCCCCEEEEEeccccc
Confidence 986532100000 000 00 000000000111 123566 999887776542
Q ss_pred ------CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEee-cCCcEEEecCCCCCCc
Q 012064 364 ------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRA 420 (471)
Q Consensus 364 ------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 420 (471)
++.|.++|+.+++.+..+... .....++|+||++ +++++. .++.|.++|..+.+..
T Consensus 343 gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 343 WKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 357999999999999888643 3588999999999 888887 5899999999998764
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.55 E-value=3.1e-13 Score=121.82 Aligned_cols=279 Identities=10% Similarity=0.061 Sum_probs=169.0
Q ss_pred ccEEEEEEcCCCCEEEEec--CCCeEEEEECCCCceEEEee------cCCCcceeEEEEecCCCCeEEEEEeC-----CC
Q 012064 62 GCVNTVSFNTDGDILISGS--DDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAA-----DG 128 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg 128 (471)
..+..++++|+|+++++.. .++.++||.+.+++. ..+. ..+...+..+++.| +++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence 6789999999999998864 234356666555543 3331 23456789999999 8886665543 57
Q ss_pred eEEEEeccccCcceeeEee----ceeeeEEEEEEccCCCcEEEEEe---cCCeEEEEeccCCccceeeeecccCCcCcce
Q 012064 129 QVRHAQILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (471)
.|.+||+.+++......+. .+...+..+++++++..++++.. .++.|.+||+.+++....+..+...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~------ 167 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI------ 167 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT------
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc------
Confidence 8999999877654432222 12234688999986545656655 6889999999988754433210000
Q ss_pred eeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC
Q 012064 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (471)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (471)
.... ..+.++ +..+.+...++.+..|. ..+..++|+|+|+.|+.+..
T Consensus 168 ~~~~---~~~~~~-g~~~~~~~~~g~~~~~~-----------------------------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 168 APED---IDLVID-GVPVQIGQPDGTVIRPH-----------------------------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp SCCS---CCCEET-TEECBEECTTSCEECCC-----------------------------CCEEEEEECTTSCEEEEEES
T ss_pred cccc---cceeEC-CEEEEeccCCCceecee-----------------------------cccceeEeccCCCEEEEEeC
Confidence 0000 223334 44555566666654432 12578999999998877763
Q ss_pred -C-cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEE
Q 012064 282 -E-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (471)
Q Consensus 282 -~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~ 359 (471)
+ .++.++........ + ......... ...++... ...+++ +++|++++
T Consensus 215 ~~~~l~~~~~~~~~~~~-~--------------------------~~~~~~~~~-~~~g~~g~--pdgia~-d~~G~l~v 263 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQ-L--------------------------TDAELGSKI-ERYSEKPI--CDGISI-DKDHNIYV 263 (343)
T ss_dssp SCSEEEEEEHHHHTCTT-C--------------------------CHHHHHTTC-EEEEECCS--CSCEEE-CTTCCEEE
T ss_pred CCCeEEEEEHHHhcCCC-C--------------------------Chhhhhcce-EecccCCC--CceEEE-CCCCCEEE
Confidence 3 45555432100000 0 000000001 11122221 456787 99999999
Q ss_pred EeeCCCeEEEEEccCCeeeEEecC-CCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 360 SGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 360 ~g~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
+...++.|.+||.++++....... +...+.+++|.++++++++.+..+.+.+|+
T Consensus 264 a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 264 GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 988899999999856664333322 234689999999999888887666555444
No 208
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.53 E-value=1.4e-12 Score=116.90 Aligned_cols=290 Identities=11% Similarity=-0.046 Sum_probs=177.5
Q ss_pred EEEEecCCC----eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec-------
Q 012064 12 RARTSVDKA----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------- 80 (471)
Q Consensus 12 ~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~------- 80 (471)
..++...++ +|.+.|..+++.+ .++.....+ .+.++|||++++++.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~---------------------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTL---------------------GHSLGAFLS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEE---------------------EEEEECTTC--EEEECTTSSCEEEEEEEETTTT
T ss_pred EEEECCccCCccceEEEEECCCCeEE---------------------EEEeCCCCC--ceEECCCCCEEEEEcccccccc
Confidence 344444444 8889999988877 455443445 799999999888876
Q ss_pred ---CCCeEEEEECCCCceEEEeecC--C----CcceeEEEEecCCCCeEEEEEeC--CCeEEE--EeccccCcceeeEee
Q 012064 81 ---DDRRVILWDWKTERVKLSFHSG--H----NDNVFQAKIMPFTDDRSIVTCAA--DGQVRH--AQILERGGVETKLLG 147 (471)
Q Consensus 81 ---~d~~i~iwd~~~~~~~~~~~~~--~----~~~v~~~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~ 147 (471)
.++.|.+||..+++.+.++..+ . ...-..+.++| ||++++++.. +..+.+ +|..+ .......
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp--DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred cCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 3678999999999998887432 0 12356789999 9999998874 457888 99877 2221111
Q ss_pred ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC-----CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
+ +..+.|++...+++.+.|+.+.+.|+++ ++...... ..... ...+. . .++++.+++ .
T Consensus 166 ~------~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~~i~v----g~~P~---~-~~~~~~~~~-v 228 (368)
T 1mda_H 166 S------CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--GAQNC----SSQAA---Q-ANYPGMLVW-A 228 (368)
T ss_dssp S------CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--TTSCB----CSCCE---E-ETTTTEEEE-C
T ss_pred C------ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee--eeeeC----CCCcc---c-cccCCEEEE-E
Confidence 1 1224566666777788899998899887 33221100 00000 11122 3 565444444 4
Q ss_pred eCCCeEEEEEcCCCc--cCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe-e-C--------CcEEEEecC
Q 012064 223 GSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-D--------EFIYLFTQD 290 (471)
Q Consensus 223 ~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-~--------~~i~i~d~~ 290 (471)
+. +.+.+.|..... ......+.... .............++++|+++.+..+ . . +.+.++|..
T Consensus 229 s~-~~V~viD~~~~~~~v~~~~~~~~~~-----~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~ 302 (368)
T 1mda_H 229 VA-SSILQGDIPAAGATMKAAIDGNESG-----RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp BS-SCCEEEECCSSCCEEECCCCSSCTH-----HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred cC-CEEEEEECCCCcceEEEEEEecccc-----ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence 45 899999986532 11111110000 00000001111226899999877654 2 2 356799998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcE-EEEee-CCCeEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS-DCGRIF 368 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~-l~~g~-~dg~v~ 368 (471)
+.+. +..+.... ....+.| +|||++ +++.. .++.|.
T Consensus 303 t~~v--------------------------------------v~~i~vg~---~p~gi~~-s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 303 VGQT--------------------------------------SGPISNGH---DSDAIIA-AQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp SCCE--------------------------------------EECCEEEE---EECEEEE-CCSSSCEEEEEETTTTEEE
T ss_pred CCeE--------------------------------------EEEEECCC---CcceEEE-CCCCCEEEEEccCCCCeEE
Confidence 7532 22222221 2678888 999984 45555 589999
Q ss_pred EEEccCCeeeEEecCCCcceEEEEEcC
Q 012064 369 IWKKKGGELIRVIEADRHVVNCIEPHP 395 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (471)
++|+.+++.+..+.... ....+++.+
T Consensus 341 VID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 341 IYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred EEECCCCcEEEEEECCC-CCCEEEeec
Confidence 99999999999987554 345566543
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.52 E-value=1.3e-11 Score=108.71 Aligned_cols=226 Identities=13% Similarity=0.106 Sum_probs=146.6
Q ss_pred CCCC-CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 5 SNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 5 ~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
.+++ ++.++++...++.|..||.++++.. .+ .+...+.+++++|+|+++++. ++
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------~~-~~~~~~~~i~~~~dG~l~v~~--~~ 73 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----------------------RV-TMDAPVSSVALRQSGGYVATI--GT 73 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEE----------------------EE-ECSSCEEEEEEBTTSSEEEEE--TT
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcEE----------------------EE-eCCCceEEEEECCCCCEEEEE--CC
Confidence 4556 4667778888999999999876543 11 134678999999999966553 46
Q ss_pred eEEEEECCCCceEEEeec--C-CCcceeEEEEecCCCCeEEEEEeCC---------CeEEEEeccccCcceeeEeeceee
Q 012064 84 RVILWDWKTERVKLSFHS--G-HNDNVFQAKIMPFTDDRSIVTCAAD---------GQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
.|.+||.++++....... . ....++++++.| +|+++++.... ..-.+|.+........ +.....
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~ 149 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVD 149 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEES
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--Eeeccc
Confidence 799999987765322211 1 224578899999 99877754322 2345666544332222 333445
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEec--cCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDL--RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (471)
....++|+|+++.++++.+.++.|..||+ .++.....-....... .......++++++ +++.++....+.|.
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-----~~~~p~g~~~d~~-G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-----EEQIPDGMCIDAE-GKLWVACYNGGRVI 223 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-----GGCEEEEEEEBTT-SCEEEEEETTTEEE
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-----CCCCCCeeEECCC-CCEEEEEcCCCEEE
Confidence 56899999999766677777899999997 4554321111100000 1235678999998 57777777788899
Q ss_pred EEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc-CCCCeEEEee
Q 012064 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN 280 (471)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 280 (471)
.||..+++.... ...+...+++++|. |+++.|..++
T Consensus 224 ~~d~~tG~~~~~---------------i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 224 RLDPVTGKRLQT---------------VKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EECTTTCCEEEE---------------EECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEcCCCceEEEE---------------EECCCCCceEEEEeCCCCCEEEEEc
Confidence 999987664322 12223568999998 8887665443
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=8.9e-13 Score=131.66 Aligned_cols=240 Identities=13% Similarity=0.075 Sum_probs=150.5
Q ss_pred CCCCCCCCcEEEEecCC-----CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE
Q 012064 3 DASNNNNNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 77 (471)
.+++||||++||.++++ ..|++||+++|+.+. ...+...+..++|+|| +.|+
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----------------------~~~~~~~~~~~~wspD-~~l~ 223 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----------------------DELKWVKFSGLAWLGN-DALL 223 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE----------------------EEEEEEESCCCEESTT-SEEE
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC----------------------ccCCCceeccEEEECC-CEEE
Confidence 35789999999877654 469999999888652 1112222357899999 9888
Q ss_pred EecCCC--------------eEEEEECCCCce--EEEee-cCCCcceeEEEEecCCCCeEEEEEeCCC-----eEEEEec
Q 012064 78 SGSDDR--------------RVILWDWKTERV--KLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADG-----QVRHAQI 135 (471)
Q Consensus 78 s~~~d~--------------~i~iwd~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~ 135 (471)
.++.++ .|++|++.++.. ...+. ..+...+..+.|+| ||++|+..+.++ .|.+||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEE
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEEC
Confidence 887654 389999977652 12221 23334588999999 999988877544 8999999
Q ss_pred cccCcceeeEeeceeeeEEEEEEccCCCcEEEEEec---CCeEEEEeccCCc-cceeeeecccCCcCcceeeeeeEEEEE
Q 012064 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
.++.......+..+........ +|+++.+++.... ++.|.+||+.++. ....+... +...+..+++
T Consensus 302 ~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---------~~~~l~~~~~ 371 (741)
T 1yr2_A 302 TNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---------SKDNLESVGI 371 (741)
T ss_dssp ETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---------CSSEEEEEEE
T ss_pred CCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC---------CCCeEEEEEE
Confidence 7762110112444444444443 4788554444332 4569999998753 22222211 1223566777
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCC-CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE-ee----CCcEE
Q 012064 212 DPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS-YN----DEFIY 285 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~----~~~i~ 285 (471)
+ ++.++++...++..++|.+.. ++.. ..+.......+..+.++|+++.++. .+ .++++
T Consensus 372 ~--~~~lv~~~~~dg~~~l~~~~~~g~~~--------------~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 372 A--GNRLFASYIHDAKSQVLAFDLDGKPA--------------GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp E--BTEEEEEEEETTEEEEEEEETTSCEE--------------EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred E--CCEEEEEEEECCEEEEEEEeCCCCce--------------eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 6 357888888999877776542 2211 1111123566888999999875553 22 23699
Q ss_pred EEecCCCC
Q 012064 286 LFTQDMGL 293 (471)
Q Consensus 286 i~d~~~~~ 293 (471)
+||+.++.
T Consensus 436 ~~d~~tg~ 443 (741)
T 1yr2_A 436 ALDPATAK 443 (741)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 99987653
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=1.1e-11 Score=113.97 Aligned_cols=271 Identities=10% Similarity=0.012 Sum_probs=159.5
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC--eEEEEeccccC
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERG 139 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 139 (471)
.....++|+++|+++++...++.|++||..++...... ... .... ++|+| +++.|+++..++ .|.+++.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCCc
Confidence 46789999999998888888899999999877764433 332 2334 89999 999998888766 78888876554
Q ss_pred cceee-Ee-eceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCc
Q 012064 140 GVETK-LL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (471)
Q Consensus 140 ~~~~~-~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (471)
..... .+ ......+.+++++|++..+ +.+..++.|+.||..++... .+......... ...+...++|+|+++.
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~l-yv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~---~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWL-YFVDSNKNFGRFNVKTQEVT-LIKQLELSGSL---GTNPGPYLIYYFVDSN 280 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEE-EEECTTCEEEEEETTTCCEE-EEEECCCCSCC---CCSSCCEEEEETTTTE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeE-EEEECCCcEEEEECCCCCEE-EEecccccCCC---CCCccccEEEeCCCCE
Confidence 32221 01 1134567889999954354 44777889999999877532 22111110000 1111138999997577
Q ss_pred eEEEEeCCCeEEEEEcCCCccCCCCCCCCC-CCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCC
Q 012064 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLG 294 (471)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~ 294 (471)
++++-..++.|+.|+....... . .+.. ...+..-......-.....++++|+|+++++-. +..|+.|+...+..
T Consensus 281 lyv~d~~~~~I~~~~~~g~~~~-~--~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGECEW-F--CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEEETTTTEEEEECTTCCEEE-E--EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCCCEEE-E--EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 7777778889999987643110 0 0000 000000000000123468999999999666654 34799999655421
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
... ...+. ......... ....-. ....+++ +++|.++++-..++.|+.+++
T Consensus 358 ~~~-~g~~~--------------------~~g~~~g~~---~~~~~~--~P~giav-d~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STV-AGQVD--------------------VASQIDGTP---LEATFN--YPYDICY-DGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEE-EECTT--------------------CBSCCCBST---TTCCBS--SEEEEEE-CSSSEEEEEESTTCEEEEEEE
T ss_pred EEE-eCCCC--------------------CCCcCCCCh---hceEeC--CceEEEE-cCCCCEEEEECCCCeEEEEEe
Confidence 000 00000 000000000 000011 2678888 999888888888889988775
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.51 E-value=2.7e-13 Score=121.70 Aligned_cols=181 Identities=10% Similarity=0.169 Sum_probs=132.9
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCc---------eEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
+++.+++++...++++|+.++ +++|++++.+ ........+.+ |+.++| |+++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 689999999999999999985 7779875443 11101124566 999999 57888888 78999999
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
|+.+..... ....|...+.++.+.+. + +++++.||.|.+||++++.... ....|.|++|+|
T Consensus 112 dv~sl~~~~--~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~--------------~~~~Vs~v~WSp 172 (388)
T 1xip_A 112 DLEELSEFR--TVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ--------------LAQNVTSFDVTN 172 (388)
T ss_dssp ESSSTTCEE--EEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE--------------EEESEEEEEECS
T ss_pred EchhhhccC--ccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc--------------ccCCceEEEEcC
Confidence 998766433 35567777888777654 3 7888999999999999877542 223699999999
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcc--CCCCCCCCCCCcCCCCcccC--CCccceEEEEEcCCCCeEEEee
Q 012064 214 RNANLFAVAGSDEYTRLYDIRKYKW--DGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
+ | ++.|..||.+++|+....+. ... ..+|..... .|...|.++.|.++++++++..
T Consensus 173 k-G--~~vg~~dg~i~~~~~~~~~~~~k~~--------I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 S-Q--LAVLLKDRSFQSFAWRNGEMEKQFE--------FSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp S-E--EEEEETTSCEEEEEEETTEEEEEEE--------ECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred C-c--eEEEEcCCcEEEEcCCCccccccce--------ecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 8 4 67899999999998876652 111 011222221 3568899999999999988754
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=9.1e-11 Score=103.37 Aligned_cols=238 Identities=11% Similarity=0.111 Sum_probs=141.9
Q ss_pred ccccccEEEEEEcCC-CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEecc
Q 012064 58 DKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (471)
Q Consensus 58 ~~h~~~V~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 136 (471)
..+..---+..|+|+ +.++++...++.|..||..+++. ..+ .....+.+++++| +++++++ . ++.|.+||..
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~--dG~l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQ--SGGYVAT-I-GTKFCALNWK 81 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBT--TSSEEEE-E-TTEEEEEETT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECC--CCCEEEE-E-CCeEEEEECC
Confidence 334445568899995 45666777789999999987765 333 2456789999999 9985554 4 5679999987
Q ss_pred ccCcceeeEee--ceeeeEEEEEEccCCCcEEEEEecC---------CeEEEEeccC-CccceeeeecccCCcCcceeee
Q 012064 137 ERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRT-GAATELFTCRPIDDRRNYMTVV 204 (471)
Q Consensus 137 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 204 (471)
+++........ .....+.+++++|+|. ++++...+ ..-.+|.+.. ++...... ...
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------~~~ 149 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-----------QVD 149 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------EES
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------ccc
Confidence 65433211111 1234578999999994 54443221 1223333322 22111111 112
Q ss_pred eeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcE
Q 012064 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i 284 (471)
..+.++|+|++..++++.+.++.|..|++.... +.+..
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~------------------------G~~~~------------------ 187 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT------------------------GQISN------------------ 187 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT------------------------CCEEE------------------
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCC------------------------CcccC------------------
Confidence 345666666633333444455666666652100 00000
Q ss_pred EEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCC
Q 012064 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~d 364 (471)
......+..... ....+++ +++|++.++...+
T Consensus 188 ---------------------------------------------~~~~~~~~~~~~--~p~g~~~-d~~G~lwva~~~~ 219 (297)
T 3g4e_A 188 ---------------------------------------------RRSVYKLEKEEQ--IPDGMCI-DAEGKLWVACYNG 219 (297)
T ss_dssp ---------------------------------------------EEEEEECCGGGC--EEEEEEE-BTTSCEEEEEETT
T ss_pred ---------------------------------------------cEEEEECCCCCC--CCCeeEE-CCCCCEEEEEcCC
Confidence 000000111111 2567777 9999888887778
Q ss_pred CeEEEEEccCCeeeEEecCCCcceEEEEEc-CCCCEEEEee
Q 012064 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSG 404 (471)
Q Consensus 365 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~ 404 (471)
+.|..||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 899999998899998888877789999998 8887554443
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=2.1e-11 Score=110.53 Aligned_cols=252 Identities=10% Similarity=-0.001 Sum_probs=153.2
Q ss_pred CCCCCCCCcEEEEec----------CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC
Q 012064 3 DASNNNNNKRARTSV----------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD 72 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~ 72 (471)
.+.++|++++++++. .++.|.+||..+++.+.+.. ..-..... +...-..++|+||
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~-------------~~~~~~~~-~g~~p~~~~~spD 135 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-------------LPDAPRFD-VGPYSWMNANTPN 135 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE-------------CCCccccc-cCCCccceEECCC
Confidence 356899999999885 37889999999777663100 00000000 1123458899999
Q ss_pred CCEEEEecC--CCeEEEEECCCCceEEE-eecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccCcceeeEe--
Q 012064 73 GDILISGSD--DRRVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLL-- 146 (471)
Q Consensus 73 g~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 146 (471)
|++|+.++. ++.|.++| .+++.+.. +. .... +.+.| ++ +.+++.+.||.+.+++. +++.......
T Consensus 136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~~---~~~~~--~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~ 206 (373)
T 2mad_H 136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPTC---YHIHP--GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA 206 (373)
T ss_pred CCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCce---EEEEe--CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc
Confidence 999998874 47899999 99988777 52 2222 44555 43 45667778999999998 6654422110
Q ss_pred -eceeee-EEEEEEccCCCcEEEEEecCCeEEEEeccCCccc--eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 147 -GKHQGR-AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 147 -~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
.....+ .....+.+++..+++.. .++.+.+.|+.+.... ..+...................++++|++ ..++++
T Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~ 284 (373)
T 2mad_H 207 MLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLL 284 (373)
T ss_pred cccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEE
Confidence 011112 12345666665544444 6789999999765322 22211100000000011224457899985 455554
Q ss_pred eC----------CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCC-eEEEee--CCcEEEEec
Q 012064 223 GS----------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN--DEFIYLFTQ 289 (471)
Q Consensus 223 ~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~~~i~i~d~ 289 (471)
.. .+.|.++|..+.+....... .....+++|+|||+ +++++. ++.|.++|.
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----------------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCCEEEEEEEC----------------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 32 35799999998875433211 22468899999999 676665 568999999
Q ss_pred CCCCCC
Q 012064 290 DMGLGP 295 (471)
Q Consensus 290 ~~~~~~ 295 (471)
.+++..
T Consensus 349 ~t~~vv 354 (373)
T 2mad_H 349 GAGDQD 354 (373)
T ss_pred CCCCEE
Confidence 886543
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.50 E-value=5.6e-12 Score=124.72 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=83.2
Q ss_pred cccccEEEEEEcCCCCEEEE-----ecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC-----
Q 012064 59 KHRGCVNTVSFNTDGDILIS-----GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG----- 128 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----- 128 (471)
+|...+..++|||||++||. |+.+..|++||+.+++.+...... .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws---Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL---GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE---TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe---CCCEEEEEEecCccccc
Confidence 46678999999999999984 333468999999999865432111 123567888 677777777663
Q ss_pred --------eEEEEeccccCcceeeEee--c-eeeeEEEEEEccCCCcEEEEEecC---CeEEEEeccCCc
Q 012064 129 --------QVRHAQILERGGVETKLLG--K-HQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGA 184 (471)
Q Consensus 129 --------~i~iwd~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~ 184 (471)
.|++|++.+........+. . |......+.|+|+++.++++.+.+ +.|+++|+.++.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 3999998776543322232 2 334567899999997666655432 589999988764
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=1.7e-12 Score=116.53 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=129.4
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
++.++...++++|+.++ +++|+.+..+.... ....+ ++.... ..+.. |+.++| |+++|+++ .++
T Consensus 43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~------~~~~~----~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~ 106 (388)
T 1xip_A 43 LDISNSKSLFVAASGSK-AVVGELQLLRDHIT------SDSTP----LTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRN 106 (388)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHHHHHH------SSSCC----CCCSEE-EECTT-EEEEEE--ETTEEEEE-ESS
T ss_pred EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc------ccccc----ccceEE-eeCCC-eeEEEE--CCCEEEEE-cCC
Confidence 45678888999999885 55699875441100 00000 111122 23566 999999 99999998 889
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCC
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (471)
.|++||+.+....... ..|...+.++.+.+ . .++++..||.+.+||+.++.... +...|.+++|+|+|
T Consensus 107 ~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 107 ALYSLDLEELSEFRTV-TSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ- 174 (388)
T ss_dssp EEEEEESSSTTCEEEE-EECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE-
T ss_pred cEEEEEchhhhccCcc-ceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc-
Confidence 9999999876654444 56777888888876 3 38889999999999998766432 45689999999998
Q ss_pred cEEEEEecCCeEEEEeccCCcc--ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE
Q 012064 164 HVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (471)
Q Consensus 164 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (471)
++.|..||.+++|+.+..+. ...+...+... ....+...|.++.|.++ ..++++
T Consensus 175 --~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~-~~~~~~~~V~sI~wl~~-~~flv~ 230 (388)
T 1xip_A 175 --LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE-ELPVEEYSPLSVTILSP-QDFLAV 230 (388)
T ss_dssp --EEEEETTSCEEEEEEETTEEEEEEEECCCHHHH-TSCTTTSEEEEEEESSS-SEEEEE
T ss_pred --eEEEEcCCcEEEEcCCCccccccceecCCcccc-cccCCCeeEEEEEEecC-CeEEEE
Confidence 57789999999999888775 44443221110 00003457999999997 566665
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.47 E-value=4.2e-10 Score=100.45 Aligned_cols=228 Identities=12% Similarity=0.095 Sum_probs=138.5
Q ss_pred cEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc
Q 012064 63 CVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (471)
Q Consensus 63 ~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 141 (471)
...+..|+|++ .++++...++.|..||..+++. ..+ .....+.++.|+| +++++++. .+ .|.+||..+++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVH--ALPFMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEE--ECSSCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEE--ECCCcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCcEE
Confidence 34678899975 5666776788999999987764 333 2346799999999 99887765 34 4899998766543
Q ss_pred eeeEee--ceeeeEEEEEEccCCCcEEEEEec------CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 142 ETKLLG--KHQGRAHKLAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 142 ~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
...... .....+.+++++|++. ++++... .+.|..++ +++...... .....+.++|+|
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-----------~~~~~~~i~~s~ 188 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-----------DISIPNSICFSP 188 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-----------EESSEEEEEECT
T ss_pred EEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-----------CCcccCCeEEcC
Confidence 211111 1124688999999994 5444332 23455555 333221111 112346777888
Q ss_pred CCCceEEEEeCCCeEEEEEcC--CC-ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecC
Q 012064 214 RNANLFAVAGSDEYTRLYDIR--KY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~ 290 (471)
++..+.++.+.++.|.+||+. ++ +.. .. +.+ .+
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------------------~~-----------~~~----------~~-- 224 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTG---------------------KA-----------EVF----------ID-- 224 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSS---------------------CC-----------EEE----------EE--
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCccc---------------------Cc-----------eEE----------EE--
Confidence 743333444456677777764 22 100 00 000 00
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEE
Q 012064 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (471)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iw 370 (471)
+..... ....+++ +++|++.++...++.|.+|
T Consensus 225 ---------------------------------------------~~~~~~--~p~gi~~-d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 225 ---------------------------------------------STGIKG--GMDGSVC-DAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp ---------------------------------------------CTTSSS--EEEEEEE-CTTSCEEEEEETTTEEEEE
T ss_pred ---------------------------------------------CCCCCC--CCCeeEE-CCCCCEEEEEeCCCEEEEE
Confidence 000011 1446676 8999877776667899999
Q ss_pred EccCCeeeEEecCCCcceEEEEEc-CCCCEEEEee
Q 012064 371 KKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSG 404 (471)
Q Consensus 371 d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~ 404 (471)
|. +++.+..+..+...+.+++|+ |+++.|+.++
T Consensus 257 d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 257 DT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 98 677777777777789999998 8887664443
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.47 E-value=3.3e-11 Score=110.88 Aligned_cols=256 Identities=10% Similarity=0.021 Sum_probs=154.4
Q ss_pred cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC--eEEEEeccC
Q 012064 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRT 182 (471)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 182 (471)
.....++|+| +++.+++...++.|+.||..++..... ... ..... ++|+|++. .++++..++ .|..++...
T Consensus 131 ~~P~~la~d~--~g~lyv~d~~~~~I~~id~~~g~~~~~--~~~-~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVG--NNTVLAYQRDDPRVRLISVDDNKVTTV--HPG-FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECS--TTEEEEEETTTTEEEEEETTTTEEEEE--EET-CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeC--CCCEEEEecCCCcEEEEECCCCEEEEe--ecc-CCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCC
Confidence 3567899999 999777777789999999876544322 222 22234 89999995 566666655 799999876
Q ss_pred CccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCcc
Q 012064 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (471)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (471)
+.....+...... ....+.+++++|+++.++ .+..++.|+.||..+......... . ..+...
T Consensus 204 ~~~~~~~g~~~~~------~~~~p~~iav~p~~g~ly-v~d~~~~I~~~d~~~~~~~~~~~~----------~-~~g~~~ 265 (409)
T 3hrp_A 204 GWAPTRIGQLGST------FSGKIGAVALDETEEWLY-FVDSNKNFGRFNVKTQEVTLIKQL----------E-LSGSLG 265 (409)
T ss_dssp TTCEEEEEECCTT------SCSCCCBCEECTTSSEEE-EECTTCEEEEEETTTCCEEEEEEC----------C-CCSCCC
T ss_pred CceeEEeeeccch------hcCCcEEEEEeCCCCeEE-EEECCCcEEEEECCCCCEEEEecc----------c-ccCCCC
Confidence 6543333111000 123467899999645444 467788999999876542100000 0 000111
Q ss_pred --ceEEEEEcCCCCeE-EEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec
Q 012064 263 --GITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (471)
Q Consensus 263 --~i~~~~~~~~~~~l-~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (471)
+...++|+|++..| ++-. .+.|+.|+...... .+.... ......... ....
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~--------------------~~~g~~dg~---~~~~ 320 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSA--------------------TQKTVQDGL---REEA 320 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECT--------------------TCCSCBCEE---GGGC
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCC--------------------CCCCcCCCc---cccc
Confidence 11389999964444 4433 45799998754200 000000 000000000 0000
Q ss_pred CCceeEeeeeeeeCCCCcEEEEee-CCCeEEEEEccCCeeeEEecCC---------------CcceEEEEEcCCCCEEEE
Q 012064 339 HRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEAD---------------RHVVNCIEPHPHSTVLAS 402 (471)
Q Consensus 339 ~~~~~~i~~~~~~s~~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~h---------------~~~v~~~~~s~~~~~l~s 402 (471)
.-. ....+++ +|+|+++++-. .++.|+.|++.+++.. .+.++ -.....++++|++.++++
T Consensus 321 ~~~--~P~gia~-d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa 396 (409)
T 3hrp_A 321 LFA--QPNGMTV-DEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA 396 (409)
T ss_dssp BCS--SEEEEEE-CTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred EeC--CCeEEEE-eCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence 001 1678888 99999777777 7899999998777643 33333 235889999999888888
Q ss_pred eecCCcEEEecC
Q 012064 403 SGIESDIKILTP 414 (471)
Q Consensus 403 ~~~dg~i~iw~~ 414 (471)
-..+++|+.+++
T Consensus 397 d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 397 EAWGKAIRKYAV 408 (409)
T ss_dssp ESTTCEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 888888988765
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.47 E-value=1e-11 Score=121.88 Aligned_cols=367 Identities=12% Similarity=0.031 Sum_probs=185.8
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecccc-ccE-EEEEEcCCCCEEEEecCCCeEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V-~~~~~s~~g~~l~s~~~d~~i~i 87 (471)
+..+++++.++.|..+|.++|+.+-+.-..... . ...... ..+ ..+++ ++..++.++.|+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~---~---------~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDR---H---------RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCG---G---------GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCc---c---------ccccccccCCCCccEE--ECCEEEEEccCCEEEE
Confidence 566777788899999999999877321100000 0 000000 000 01122 3567888889999999
Q ss_pred EECCCCceEEEeecC-CCcceeEEEEecCC-CCeEEEEEe-----CCCeEEEEeccccCcceeeEee-------------
Q 012064 88 WDWKTERVKLSFHSG-HNDNVFQAKIMPFT-DDRSIVTCA-----ADGQVRHAQILERGGVETKLLG------------- 147 (471)
Q Consensus 88 wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~------------- 147 (471)
+|..+|+.+.++... +......+..+|.- ++..++..+ .+|.|..||..+++.+-.....
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999998887433 22111111111110 444444332 3689999999988865432110
Q ss_pred ----------------ceeeeEEEEEEccCCCcEEEEEecCC-------------------eEEEEeccCCccceeeeec
Q 012064 148 ----------------KHQGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFTCR 192 (471)
Q Consensus 148 ----------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 192 (471)
.+......++++|+. .+++.++.++ .|..+|.++++....++..
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~ 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred cccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC
Confidence 000111257788877 4677777665 3999999999998877643
Q ss_pred ccCCcCcceeeeeeEEEEEcCCCCc---eEEEEeCCCeEEEEEcCCCccCCCCCCCCCCC-------cCCCC---c-c--
Q 012064 193 PIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD-------YFCPP---N-L-- 256 (471)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~---~-~-- 256 (471)
..... .+.............+ +. .++.++.+|.++++|.++++.+....+....- ...+. . .
T Consensus 295 ~~d~w-d~~~~~~~~l~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~ 372 (689)
T 1yiq_A 295 PGDAW-DYTATQHMILAELPID-GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAY 372 (689)
T ss_dssp TTCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCT
T ss_pred Ccccc-cccCCCCcEEEeeccC-CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccc
Confidence 21110 0001111111122223 33 78889999999999999998753322211000 00000 0 0
Q ss_pred cCCCc-----------cceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCCCCCCCCccccccc-cccC----------
Q 012064 257 IGDEQ-----------VGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEA-SEMG---------- 313 (471)
Q Consensus 257 ~~~~~-----------~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~---------- 313 (471)
..... ..-..++++|+..+++....+ ....+...... .+.........-. ....
T Consensus 373 ~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 449 (689)
T 1yiq_A 373 WKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP---KRNPFKSMYQLGLRTGMMPEGAEGLLEM 449 (689)
T ss_dssp TTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC---CCCSCTTSCCCSSEECCCCSSHHHHHHH
T ss_pred cCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc---cccccccccccCccccccCcccccCCCC
Confidence 00000 011237888988887776543 33333322210 0000000000000 0000
Q ss_pred -CC-CCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcc-eEE
Q 012064 314 -SD-HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV-VNC 390 (471)
Q Consensus 314 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~ 390 (471)
+. ...+... +....+..-.+..+.. ...-.+ ...+.+++.|+.||.++.||.++|+.+.+++...+. ..-
T Consensus 450 ~~~~~g~l~A~---D~~tG~~~W~~~~~~~---~~~g~~-~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 522 (689)
T 1yiq_A 450 AKSWSGKLIAW---DPVKQQAAWEVPYVTI---FNGGTL-STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAP 522 (689)
T ss_dssp HTTCEEEEEEE---ETTTTEEEEEEEESSS---CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCCcceeEEEE---ECCCCCeEeEccCCCC---ccCccc-eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCc
Confidence 00 0000000 0111111112222211 122233 556778999999999999999999999888755332 244
Q ss_pred EEEcCCCC-EEEEe
Q 012064 391 IEPHPHST-VLASS 403 (471)
Q Consensus 391 ~~~s~~~~-~l~s~ 403 (471)
+.|..+|+ ++++.
T Consensus 523 ~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 523 VTYSVDGEQYVTFM 536 (689)
T ss_dssp EEEEETTEEEEEEE
T ss_pred eEEEECCEEEEEEE
Confidence 66778887 44433
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=1.3e-10 Score=106.20 Aligned_cols=318 Identities=9% Similarity=0.022 Sum_probs=178.7
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecc-ccccEEEEEEcCCCCEEEEecCCCeEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGSDDRRVIL 87 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~~~d~~i~i 87 (471)
.+..+++++.++.|..+|.++|+.+-+.... ....... ....+.+.- ..++..++.++.++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLA-------------EKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECC-------------C---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCc-------------cccccccccCcccccCc-eEeCCEEEEEcCCCEEEE
Confidence 4667888888999999999999876310000 0000000 012222211 123556777888999999
Q ss_pred EECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee---EEEEEEccCCCc
Q 012064 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPH 164 (471)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~ 164 (471)
+|..+|+.+.+.. ........... .+..++.++.++.+..+|..+++............. ....... ++
T Consensus 118 ~d~~tG~~~W~~~-~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-- 189 (376)
T 3q7m_A 118 LNTSDGTVAWQTK-VAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-- 189 (376)
T ss_dssp EETTTCCEEEEEE-CSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--
T ss_pred EECCCCCEEEEEe-CCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--
Confidence 9999999887763 22222222222 344677788899999999988876544222111000 0111222 33
Q ss_pred EEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee-EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCC
Q 012064 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 165 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (471)
.++.++.++.+..+|.++++.....................+ ...... +..++.++.++.+..+|.++++......
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE---TTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 467888899999999999988766653211100000000000 001111 2467777889999999998876432211
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
......+... ++.+++...++.+..+|..+++....
T Consensus 267 -----------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~-------------------------- 302 (376)
T 3q7m_A 267 -----------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWT-------------------------- 302 (376)
T ss_dssp -----------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEE--------------------------
T ss_pred -----------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEe--------------------------
Confidence 1112233332 34344444467899999887642211
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEE-EEEcCCCCEEEE
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC-IEPHPHSTVLAS 402 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s 402 (471)
....... ....... .+..|+.++.+|.|+.+|..+|+.+.........+.. ... .+..|+.
T Consensus 303 ------------~~~~~~~-~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v 364 (376)
T 3q7m_A 303 ------------QSDLLHR-LLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLI 364 (376)
T ss_dssp ------------ECTTTTS-CCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEE
T ss_pred ------------ecccCCC-cccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEE
Confidence 1100000 0112222 2457888888999999999999988777653333322 222 2456777
Q ss_pred eecCCcEEEec
Q 012064 403 SGIESDIKILT 413 (471)
Q Consensus 403 ~~~dg~i~iw~ 413 (471)
++.+|.|+.|+
T Consensus 365 ~~~~G~l~~~~ 375 (376)
T 3q7m_A 365 QAKDGTVYSIT 375 (376)
T ss_dssp EBTTSCEEEEE
T ss_pred EeCCCEEEEEe
Confidence 88899999886
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=5.8e-11 Score=105.08 Aligned_cols=233 Identities=12% Similarity=0.027 Sum_probs=146.2
Q ss_pred CCCcceeEEEEecCCCCe-EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEec
Q 012064 102 GHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (471)
Q Consensus 102 ~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 180 (471)
..........|+| +++ .+++...++.|..|+. +++ .. .+..+...+..+++++++ +++++...++.|..|+.
T Consensus 42 ~~~~~~egp~~~~--~g~~l~~~d~~~~~i~~~~~-~g~-~~--~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWE--AQRTLVWSDLVGRRVLGWRE-DGT-VD--VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEG--GGTEEEEEETTTTEEEEEET-TSC-EE--EEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeC--CCCEEEEEECCCCEEEEEeC-CCC-EE--EEeCCCCccceeeECCCC-CEEEEECCCCEEEEECC
Confidence 3445567899999 888 5566667889999987 333 22 244456678999999999 45555455678999998
Q ss_pred cCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEE----EeC-------------CCeEEEEEcCCCccCCCCC
Q 012064 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV----AGS-------------DEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~ 243 (471)
. ++......... + .....++.++++|+ +.+.++ |.. .+.|+.||..+++..
T Consensus 115 ~-g~~~~~~~~~~-----~-~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~---- 182 (305)
T 3dr2_A 115 D-GQAHLLVGRYA-----G-KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ---- 182 (305)
T ss_dssp T-SCEEEEECEET-----T-EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE----
T ss_pred C-CCEEEEEeccC-----C-CccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE----
Confidence 6 44322211100 0 01234678999998 566665 332 246777777555421
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C------CcEEEEecCCCCCCCCCCCCCccccccccccCCCC
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (471)
... .......++|+|+++.|+.+. . +.|++|++..+. .
T Consensus 183 -----------~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l--------------------- 227 (305)
T 3dr2_A 183 -----------RMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L--------------------- 227 (305)
T ss_dssp -----------EEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E---------------------
T ss_pred -----------EEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c---------------------
Confidence 111 223467899999999776654 3 479999886431 0
Q ss_pred CCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcC
Q 012064 317 TSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (471)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 395 (471)
.....+.. ... ....+++ +++|++. +++.+ .|.+|+. +++.+..+..+. .+.+++|+|
T Consensus 228 --------------~~~~~~~~~~~~--~pdgi~~-d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~ 286 (305)
T 3dr2_A 228 --------------HDRRHFASVPDG--LPDGFCV-DRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQ 286 (305)
T ss_dssp --------------EEEEEEECCSSS--CCCSEEE-CTTSCEE-ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECT
T ss_pred --------------cCCeEEEECCCC--CCCeEEE-CCCCCEE-EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeC
Confidence 00011100 111 1446777 9999944 44444 4999998 677777776555 589999999
Q ss_pred CCCEEEEeecCCcE
Q 012064 396 HSTVLASSGIESDI 409 (471)
Q Consensus 396 ~~~~l~s~~~dg~i 409 (471)
+++.|..++.++..
T Consensus 287 d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 287 AQQRLFITGGPCLW 300 (305)
T ss_dssp TSCEEEEEETTEEE
T ss_pred CCCEEEEEcCCeEE
Confidence 99888777765433
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=4.8e-12 Score=113.41 Aligned_cols=267 Identities=7% Similarity=-0.114 Sum_probs=166.2
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe----------CCCeEEEEeccccCcceeeEeece----
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGGVETKLLGKH---- 149 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~---- 149 (471)
+|.+.|..+++.+.++..+.. + .+.++| |+++++++. .++.|.+||..+.+.+....+.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 889999999999999866654 4 799999 999999886 368899999999888766333210
Q ss_pred -eeeEEEEEEccCCCcEEEEEec--CCeEEE--EeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 150 -QGRAHKLAIEPGSPHVFYTCGE--DGLVQH--FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 150 -~~~v~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
......++++||++. ++++.. +..+.+ +|+.+ ...+... . +..+.|++...+++.+.
T Consensus 122 ~g~~P~~ia~SpDGk~-lyVan~~~~~~v~V~~iD~~t---v~~i~v~------------~--~~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 122 VGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVPGASD---DQLTKSA------------S--CFHIHPGAAATHYLGSC 183 (368)
T ss_dssp BSCCTTSEEECTTSSC-EEEEECSSSCEEEEEETTTEE---EEEEECS------------S--CCCCEEEETTEEECCCC
T ss_pred cCCCcceEEEcCCCCE-EEEEccCCCCeEEEEEEchhh---ceEEECC------------C--ceEEccCCCeEEEEEcC
Confidence 123567899999965 455543 467888 99887 3333211 0 11233554556667778
Q ss_pred CCeEEEEEcCC-----CccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCC--CC
Q 012064 225 DEYTRLYDIRK-----YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP--NP 297 (471)
Q Consensus 225 dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~--~~ 297 (471)
||.+.+.|+.+ ++...... ....-...+. ....++.+++... +.+.+.|....... ..
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t-----------~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCT-----------GAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSC-----------TTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred CCCEEEEECccccccCCeEEEEee-----------eeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 88888888876 33221100 0011112222 3333344444445 88999988642110 00
Q ss_pred CCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC---------CCeEE
Q 012064 298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---------CGRIF 368 (471)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~---------dg~v~ 368 (471)
+.... ............ ...+.+ +||++.++.+.. ++.+.
T Consensus 249 ~~~~~-------------------------~~~~~~~~~p~g-----~~~v~~-s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 249 IDGNE-------------------------SGRKADNFRSAG-----FQMVAK-LKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp CCSSC-------------------------THHHHTTEEECS-----SSCEEE-ETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred EEecc-------------------------ccccccccccCc-----ceeeEE-cCCCCEEEEEeccccCcccccCCCEE
Confidence 00000 000000000000 122566 999988886543 23566
Q ss_pred EEEccCCeeeEEecCCCcceEEEEEcCCCC-EEEEee-cCCcEEEecCCCCCCc
Q 012064 369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRA 420 (471)
Q Consensus 369 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 420 (471)
++|+.+++.+..+.... ....++|+|||+ ++++.. .++.|.++|+.+.+..
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 99999999998886543 689999999998 566666 5999999999998764
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.43 E-value=3.8e-11 Score=117.63 Aligned_cols=383 Identities=12% Similarity=0.018 Sum_probs=192.2
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
+..+++++.++.|..+|.++|+.+-+........... ....+ ..-..+++ ++..++.++.|+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~---------~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGF---------KGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGG---------GSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc---------ccccc-CCCCCceE--ECCEEEEEcCCCEEEEEE
Confidence 4567777778899999999988773111000000000 00000 00011222 456788888999999999
Q ss_pred CCCCceEEEeecCCC----cceeEEEEecCCCCeEEEEEeC------CCeEEEEeccccCcceeeEeece----------
Q 012064 90 WKTERVKLSFHSGHN----DNVFQAKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKH---------- 149 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~---------- 149 (471)
..+|+.+.++..... ..+...-... ++ .++.++. +|.|+.+|..+++.+-.......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVF--KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEE--CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 999999888743201 1222111111 44 4444443 68999999988876544222111
Q ss_pred --------------------eeeEEEEEEccCCCcEEEEEecCC-------------------eEEEEeccCCccceeee
Q 012064 150 --------------------QGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFT 190 (471)
Q Consensus 150 --------------------~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~ 190 (471)
......++++|++. +++.++.++ .|..+|.++++....++
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~ 300 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ 300 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence 01113567888874 566666553 59999999999888876
Q ss_pred ecccCCcCcceeeeeeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCC-----CcCCCCc--------
Q 012064 191 CRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA-----DYFCPPN-------- 255 (471)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~-------- 255 (471)
........ +........+....++. ..++.++.+|.++++|.++++.+....+.... +..+...
T Consensus 301 ~~~~d~wd-~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 379 (677)
T 1kb0_A 301 ETPGDNWD-YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG 379 (677)
T ss_dssp SSTTCCSC-CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred cCCCcccc-cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence 53221100 00111122223333421 67889999999999999999876543332100 0000000
Q ss_pred -----ccCCC--ccceEEEEEcCCCCeEEEeeCC-cEEEEecCCCCCCC-CCCCCCccccccc-----cccCC--CCCCc
Q 012064 256 -----LIGDE--QVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPN-PPPSSPVSTRSEA-----SEMGS--DHTSA 319 (471)
Q Consensus 256 -----~~~~~--~~~i~~~~~~~~~~~l~~~~~~-~i~i~d~~~~~~~~-~~~~~~~~~~~~~-----~~~~~--~~~~~ 319 (471)
..... ...-..++++|++.++++...+ ...++....-..-. .....+....... ....+ ....+
T Consensus 380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l 459 (677)
T 1kb0_A 380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL 459 (677)
T ss_dssp TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence 00000 0001257888988877766532 22223221000000 0000000000000 00000 00000
Q ss_pred cCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCc-ceEEEEEcCCCC
Q 012064 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-VVNCIEPHPHST 398 (471)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~~~~s~~~~ 398 (471)
... +....+..-.+.... . .....+ ..++..++.++.||.+++||..+|+.+..+....+ ...-+.+.++|+
T Consensus 460 ~A~---D~~tG~~~W~~~~~~-~--~~~g~~-~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 460 LAW---DPVAQKAAWSVEHVS-P--WNGGTL-TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp EEE---ETTTTEEEEEEEESS-S--CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EEE---eCCCCcEEeecCCCC-C--CcCcce-EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence 000 000011111111111 1 223333 55677888899999999999999999988864432 233455667887
Q ss_pred E-EEEeec----------------CCcEEEecCCC
Q 012064 399 V-LASSGI----------------ESDIKILTPNA 416 (471)
Q Consensus 399 ~-l~s~~~----------------dg~i~iw~~~~ 416 (471)
. ++..+. .+.+..|.+..
T Consensus 533 ~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 533 QYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 4 444222 36788888873
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=1.2e-10 Score=103.89 Aligned_cols=223 Identities=12% Similarity=0.077 Sum_probs=139.8
Q ss_pred CCCCCC-CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC
Q 012064 4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (471)
Q Consensus 4 ~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d 82 (471)
..++++ +.++++...++.|..||.++++.. .+. +...+.+++|+|+|+++++. .+
T Consensus 54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------~~~-~~~~v~~i~~~~dg~l~v~~-~~ 109 (326)
T 2ghs_A 54 PTFDPASGTAWWFNILERELHELHLASGRKT----------------------VHA-LPFMGSALAKISDSKQLIAS-DD 109 (326)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEE----------------------EEE-CSSCEEEEEEEETTEEEEEE-TT
T ss_pred CeEeCCCCEEEEEECCCCEEEEEECCCCcEE----------------------EEE-CCCcceEEEEeCCCeEEEEE-CC
Confidence 346665 566777778899999998866533 121 23578999999999887765 44
Q ss_pred CeEEEEECCCCceEEEeecC---CCcceeEEEEecCCCCeEEEEEeCC----CeEEEEeccccCcceeeEeeceeeeEEE
Q 012064 83 RRVILWDWKTERVKLSFHSG---HNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHK 155 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 155 (471)
.|.+||..+++........ ....+.+++++| +|+++++...+ +...+|.+.+++ ... +..+......
T Consensus 110 -gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~--~~~~~~~~~~ 183 (326)
T 2ghs_A 110 -GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAKGK-VTK--LFADISIPNS 183 (326)
T ss_dssp -EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEETTE-EEE--EEEEESSEEE
T ss_pred -CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeCCc-EEE--eeCCCcccCC
Confidence 4999999888753322111 124688999999 99877655422 234455444322 211 2233345678
Q ss_pred EEEccCCCcEEEEEecCCeEEEEecc--CC-ccc--eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 156 LAIEPGSPHVFYTCGEDGLVQHFDLR--TG-AAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 156 ~~~~~~~~~~l~~~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
++|+|+++.++++.+.++.|.+||+. ++ ... ..+.... . .......++++++ +++.++...++.|..
T Consensus 184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~-----~~~~p~gi~~d~~-G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--G-----IKGGMDGSVCDAE-GHIWNARWGEGAVDR 255 (326)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--T-----SSSEEEEEEECTT-SCEEEEEETTTEEEE
T ss_pred eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC--C-----CCCCCCeeEECCC-CCEEEEEeCCCEEEE
Confidence 99999996555666667899999986 55 321 1121110 0 1124578999998 566666656788999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc-CCCCeEEEee
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN 280 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 280 (471)
||.. ++... ....+...+.+++|. |+++.|+.++
T Consensus 256 ~d~~-g~~~~---------------~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 256 YDTD-GNHIA---------------RYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ECTT-CCEEE---------------EEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred ECCC-CCEEE---------------EEECCCCCcEEEEEecCCCCEEEEEe
Confidence 9984 33211 111223468999998 8887665443
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.43 E-value=7.3e-12 Score=123.87 Aligned_cols=236 Identities=13% Similarity=0.114 Sum_probs=148.3
Q ss_pred CCCCCCCCcEEEE-----ecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEE
Q 012064 3 DASNNNNNKRART-----SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (471)
Q Consensus 3 ~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 77 (471)
.+++||||++||- |+++.+|++||+++|+.+. ..+. ......++|+ ||+.|+
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~--------------------~~~~--~~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE--------------------TPLK--DVKFSGISWL-GNEGFF 189 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE--------------------EEEE--EEESCCCEEE-TTTEEE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc--------------------cccC--CceeccEEEe-CCCEEE
Confidence 3578999999883 4445689999999988652 1111 1113567899 999999
Q ss_pred EecCCC-------------eEEEEECCCCce--EEEee-cC-CCcceeEEEEecCCCCeEEEEEeC----CCeEEEEecc
Q 012064 78 SGSDDR-------------RVILWDWKTERV--KLSFH-SG-HNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQIL 136 (471)
Q Consensus 78 s~~~d~-------------~i~iwd~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~ 136 (471)
.++.+. .|++|++.++.. ...+. .. |......+.|+| |+++|+.... +..|.++|+.
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECC
Confidence 887763 499999987653 22221 22 344577899999 9998865433 2489999987
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC---CeEEEEeccCCccc--eeeeecccCCcCcceeeeeeEEEEE
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
++..... .+..+....... +++++..+++.+..+ +.|..+|+.++... ..+.. +...+. .|
T Consensus 268 ~~~~~~~-~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~----------~~~~~~--~~ 333 (693)
T 3iuj_A 268 QENAPLL-TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP----------ERQQVL--TV 333 (693)
T ss_dssp STTCCCE-EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC----------CCSSCE--EE
T ss_pred CCCCceE-EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec----------CCCCEE--EE
Confidence 7643222 244454444444 666676666666554 68999999887541 22221 111233 78
Q ss_pred cCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe-eC----CcE
Q 012064 212 DPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-ND----EFI 284 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~----~~i 284 (471)
++++..++++...++ .|++||+..... ..+.......+..+.++++++.++.. ++ +.+
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~~---------------~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFDYEGKRV---------------REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTSCEE---------------EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred EEECCEEEEEEEECCeeEEEEEECCCCee---------------EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 888544445555555 688888875431 11111223457778888888765543 33 579
Q ss_pred EEEecCCC
Q 012064 285 YLFTQDMG 292 (471)
Q Consensus 285 ~i~d~~~~ 292 (471)
+.||+.++
T Consensus 399 ~~~d~~~g 406 (693)
T 3iuj_A 399 YRFEPKSG 406 (693)
T ss_dssp EEECTTTC
T ss_pred EEEECCCC
Confidence 99998765
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=1.2e-10 Score=102.97 Aligned_cols=236 Identities=9% Similarity=0.014 Sum_probs=148.3
Q ss_pred EEeccccccEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 55 AKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
..+..+........|+|+|+ +++++..++.|..|+. +++. ..+ ..+...+..+++.+ +|+.+++...++.|..|
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~-~~~~~~~~gl~~d~--dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVL-LDATAFTNGNAVDA--QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEE-EESCSCEEEEEECT--TSCEEEEETTTTEEEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEE-eCCCCccceeeECC--CCCEEEEECCCCEEEEE
Confidence 34444556678899999998 6677777899999997 4553 333 34556789999999 99877666666789999
Q ss_pred eccccCcceee-Eeece-eeeEEEEEEccCCCcEEEE----Eec-------------CCeEEEEeccCCccceeeeeccc
Q 012064 134 QILERGGVETK-LLGKH-QGRAHKLAIEPGSPHVFYT----CGE-------------DGLVQHFDLRTGAATELFTCRPI 194 (471)
Q Consensus 134 d~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 194 (471)
+.. ++..... ...+. ...+.++++.|+| .++++ +.. .+.|..+|.++++..... .
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--- 186 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--- 186 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E---
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c---
Confidence 875 3321110 01111 1346779999999 46564 331 256888887776654332 1
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCC------CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEE
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA 268 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 268 (471)
....+.++|+|+ +..|+.+... +.|+.|++....+... .............++
T Consensus 187 --------~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~------------~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 187 --------LDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDR------------RHFASVPDGLPDGFC 245 (305)
T ss_dssp --------ESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEE------------EEEECCSSSCCCSEE
T ss_pred --------CCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCC------------eEEEECCCCCCCeEE
Confidence 113578999999 5666665554 7899999875431100 000000122345688
Q ss_pred EcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeee
Q 012064 269 FSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348 (471)
Q Consensus 269 ~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (471)
++++|++.++. .+.|.+|+... .....+..... +.++
T Consensus 246 ~d~~G~lwv~~-~~gv~~~~~~g---------------------------------------~~~~~~~~~~~---~~~~ 282 (305)
T 3dr2_A 246 VDRGGWLWSSS-GTGVCVFDSDG---------------------------------------QLLGHIPTPGT---ASNC 282 (305)
T ss_dssp ECTTSCEEECC-SSEEEEECTTS---------------------------------------CEEEEEECSSC---CCEE
T ss_pred ECCCCCEEEec-CCcEEEECCCC---------------------------------------CEEEEEECCCc---eeEE
Confidence 99999855554 55699998743 12233333222 6778
Q ss_pred eeeCCCCcEEEEeeCCCe
Q 012064 349 NFFGPKCEYVVSGSDCGR 366 (471)
Q Consensus 349 ~~~s~~g~~l~~g~~dg~ 366 (471)
+| +++++.|+.++.++.
T Consensus 283 ~f-~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 283 TF-DQAQQRLFITGGPCL 299 (305)
T ss_dssp EE-CTTSCEEEEEETTEE
T ss_pred EE-eCCCCEEEEEcCCeE
Confidence 88 899988888776543
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.39 E-value=1.1e-11 Score=111.13 Aligned_cols=297 Identities=13% Similarity=0.065 Sum_probs=177.9
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd 89 (471)
+..+..++.++.|..|| .+|+... ....+...+.++...++|.++ .++.+ |..+|
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~---------------------~~~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d 84 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKW---------------------FFKSGEIIECRPSIGKDGTIY-FGSDK--VYAIN 84 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEE---------------------SSCGGGEEEECCEETTTTEEC-CSSCE--EEEEC
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEE---------------------EEecCCCcccceEEecCCcEE-EecCc--EEEEC
Confidence 34566777788899999 7777652 222344556778887777644 44444 88888
Q ss_pred CCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEE
Q 012064 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 169 (471)
. +++....+ ............. +..+..++.++.+..+|.. ++.... .......+.++...+++ . ++.+
T Consensus 85 ~-~g~~~~~~-~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~--~~~~~~~~~~~~~~~~g-~-l~vg 153 (330)
T 3hxj_A 85 P-DGTEKWRF-DTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWR--FKTKKAIYATPIVSEDG-T-IYVG 153 (330)
T ss_dssp C-CGGGGGGS-CC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEE--EECSSCCCSCCEECTTS-C-EEEE
T ss_pred C-CCcEEEEE-ECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEE--EcCCCceeeeeEEcCCC-E-EEEE
Confidence 5 56554333 1122222223332 3456777778899999986 444332 23333445566677676 3 6778
Q ss_pred ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCC
Q 012064 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (471)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (471)
+.++.|..+|.+ ++....+... ...+.++...++ +. +..++ +.+..+| .+++....
T Consensus 154 t~~~~l~~~d~~-g~~~~~~~~~----------~~~~~~~~~d~~-g~-l~v~t--~~l~~~d-~~g~~~~~-------- 209 (330)
T 3hxj_A 154 SNDNYLYAINPD-GTEKWRFKTN----------DAITSAASIGKD-GT-IYFGS--DKVYAIN-PDGTEKWN-------- 209 (330)
T ss_dssp CTTSEEEEECTT-SCEEEEEECS----------SCCCSCCEECTT-CC-EEEES--SSEEEEC-TTSCEEEE--------
T ss_pred cCCCEEEEECCC-CCEeEEEecC----------CCceeeeEEcCC-CE-EEEEe--CEEEEEC-CCCcEEEE--------
Confidence 888999999998 7665554421 223556677766 44 44455 7799999 55432211
Q ss_pred cCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCccc
Q 012064 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (471)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (471)
.......+.++...++|.+.+...++.+..++....
T Consensus 210 -------~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~------------------------------------- 245 (330)
T 3hxj_A 210 -------FYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT------------------------------------- 245 (330)
T ss_dssp -------ECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC-------------------------------------
T ss_pred -------EccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC-------------------------------------
Confidence 011123466777888887777666778888874321
Q ss_pred ccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcE
Q 012064 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (471)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 409 (471)
....+...... +..+.. .++++ |..++.+|.|..+|. +++.+..+......+.++...++++++ .++.+|.+
T Consensus 246 --~~~~~~~~~~~--~~~~~~-~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~ 317 (330)
T 3hxj_A 246 --EKWRFKTGKRI--ESSPVI-GNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKF 317 (330)
T ss_dssp --EEEEEECSSCC--CSCCEE-CTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCE
T ss_pred --EeEEeeCCCCc--cccceE-cCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeE
Confidence 11111111111 233444 55664 666777889999996 677776666555667778877787755 47789999
Q ss_pred EEecCCCCC
Q 012064 410 KILTPNAAD 418 (471)
Q Consensus 410 ~iw~~~~~~ 418 (471)
++...+..+
T Consensus 318 ~~~~~~~~~ 326 (330)
T 3hxj_A 318 YALFNLEHH 326 (330)
T ss_dssp EEEEC----
T ss_pred EEEeccccc
Confidence 998766543
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.30 E-value=7.6e-09 Score=93.13 Aligned_cols=240 Identities=11% Similarity=0.058 Sum_probs=140.8
Q ss_pred CCeEEEE-EeCCCeEEEEecccc--CcceeeEee------c-eeeeEEEEEEccCCCcEEEEEecC------CeEEEEec
Q 012064 117 DDRSIVT-CAADGQVRHAQILER--GGVETKLLG------K-HQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDL 180 (471)
Q Consensus 117 ~~~~l~s-~~~dg~i~iwd~~~~--~~~~~~~~~------~-~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~ 180 (471)
++++|+. +..+++|.++|+.+. +....+.+. . .......+...|++ +++++..+ +.+.++|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 7777765 556789999998644 222222231 1 12245677888998 56666555 78999999
Q ss_pred cCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-------------------CCCeEEEEEcCCCccCCC
Q 012064 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------------------SDEYTRLYDIRKYKWDGS 241 (471)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~ 241 (471)
++.+.+..+...... ..--..+-|+|+ ++.+++.. .+.+|.+||+.+++....
T Consensus 172 ~T~~v~~~~~~~~~~-------~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD-------QYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp TTCCEEEECCSBCTT-------CCCCCCEEEETT-TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEccCCCC-------ccccceEEECCC-CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 999988777532111 112346788998 56777763 368999999998764433
Q ss_pred CCCCCCCCcCCCCcccCCCccceEEEEE--cCCCCeEEEeeC-------CcEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 242 TDFGQPADYFCPPNLIGDEQVGITGLAF--SDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
...+ ........+.| +|+++++..+.. ++|.+|..+.+.. ....
T Consensus 244 I~vg-------------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-~~~~------------- 296 (462)
T 2ece_A 244 LTLG-------------EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-NAEK------------- 296 (462)
T ss_dssp EESC-------------TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-EEEE-------------
T ss_pred EecC-------------CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-eEEE-------------
Confidence 2221 01233445555 999998766553 3677666543210 0000
Q ss_pred CCCCCCccCCCCCCcccccCC----eeeecCCceeEeeeeeeeCCCCcEEEEeeC-CCeEEEEEccC---CeeeEEecCC
Q 012064 313 GSDHTSAASPSTANTDVRIAP----QVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG---GELIRVIEAD 384 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~-dg~v~iwd~~~---~~~~~~~~~h 384 (471)
.+..... .. ...+ ..+.+... ....+.+ ++||++|+++.. .+.|.+||+.. .+++..+...
T Consensus 297 -----vIdi~~~--~v-~~~lp~~~~~f~~~~~--~pa~I~l-S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 297 -----VIEIPAE--PL-EGNLPEILKPFKAVPP--LVTDIDI-SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp -----EEEECCE--EC-CSSCCGGGGGGTEECC--CCCCEEE-CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred -----EEeCCCc--cc-cccccccccccccCCC--ceeEEEE-CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 0000000 00 0000 00000001 2567777 999999987765 58999999853 3555554332
Q ss_pred C--------------cceEEEEEcCCCCEEEEee
Q 012064 385 R--------------HVVNCIEPHPHSTVLASSG 404 (471)
Q Consensus 385 ~--------------~~v~~~~~s~~~~~l~s~~ 404 (471)
. +....++++|||++|+.+.
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1 1368899999999888887
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=119.27 Aligned_cols=185 Identities=12% Similarity=0.021 Sum_probs=106.8
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
++.++++++.||.|..||.++|+.+- ++.. +.+.+..+..++..+++++.|+.|+.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---------------------~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~ 64 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---------------------TLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTL 64 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---------------------EEEC--CCSCCCC-----CCEEECTTTCCEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---------------------EecC--CCceecceEcCCCEEEEeCCCCEEEEE
Confidence 57889999999999999999999772 3333 344455556678788888899999999
Q ss_pred ECCCCceEEEeecCCCc-ceeEEEEecCC-CCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEE
Q 012064 89 DWKTERVKLSFHSGHND-NVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (471)
|.++|+.+... ..+.. .+. -+|.. ++..+++++.++.++.||..+++.... +..+. ...++|++ ..+
T Consensus 65 d~~tG~~~w~~-~~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~--~~~~~----~~~~~p~~-~~v 133 (369)
T 2hz6_A 65 GSKNNEGLTKL-PFTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT--LSSAF----ADSLSPST-SLL 133 (369)
T ss_dssp -----CCSEEC-SCCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC-----------------------------E
T ss_pred ECCCCceeeee-eccCccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEE--ecCCC----cccccccC-CEE
Confidence 99999876665 22211 111 11211 455778888899999999998877654 32222 23455666 467
Q ss_pred EEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC--CceEEEEeCCCeEEEEEcCCCccC
Q 012064 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 167 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
++++.|+.|+.||.++++....+... .....+++++. ...+++++.+|.++.||.++++..
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYF------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEE------------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred EEEecCCEEEEEECCCCCEEEeEecc------------cccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 88899999999999999877665421 11222333321 145777889999999999987643
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.28 E-value=1.5e-08 Score=87.54 Aligned_cols=253 Identities=11% Similarity=0.062 Sum_probs=151.2
Q ss_pred CCEEEEecCCCeEEEEECCCCceE----EEeecCCCcceeEEEEecCCCCeEEEEE-eCCCeEEEEeccccCcceeeEee
Q 012064 73 GDILISGSDDRRVILWDWKTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLG 147 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 147 (471)
|.+|+.+.. +.|+.+++...... .............++|.| +++.|+.+ ..++.|..++........ ...
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~ 75 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTT--IIR 75 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEE--EEC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEE--EEE
Confidence 345555554 47888888654321 111111234578899998 76555544 456899999986544321 122
Q ss_pred ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC--C
Q 012064 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--D 225 (471)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d 225 (471)
........+++++++.+++++-...+.|.++++...... .+... .......++++|+++.++++... .
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~---------~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT---------GLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS---------SCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC---------CCCCccEEEEeeCCCEEEEEECCCCC
Confidence 222467899999976567667677789999998754322 22110 11245889999975555554433 4
Q ss_pred CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCc
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPV 303 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~ 303 (471)
+.|..+++..... ..+..........++++|++..|..+. .+.|..++....
T Consensus 146 ~~I~~~~~dg~~~---------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~----------- 199 (267)
T 1npe_A 146 PKIETSHMDGTNR---------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP----------- 199 (267)
T ss_dssp CEEEEEETTSCCC---------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-----------
T ss_pred cEEEEEecCCCCc---------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-----------
Confidence 6888888754321 001111123468899999887766655 457999987642
Q ss_pred cccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecC
Q 012064 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 383 (471)
.......+... ...++. . ++..+++....+.|+.+|..+++.+..+..
T Consensus 200 ---------------------------~~~~~~~~~~~---P~gi~~-d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 200 ---------------------------GRRKVLEGLQY---PFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp ---------------------------EEEEEEECCCS---EEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred ---------------------------ceEEEecCCCC---ceEEEE-e-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 00111122111 345554 3 344444444568999999999998888864
Q ss_pred CC-cceEEEEEcCCCC
Q 012064 384 DR-HVVNCIEPHPHST 398 (471)
Q Consensus 384 h~-~~v~~~~~s~~~~ 398 (471)
.. .....+++.|++.
T Consensus 248 g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 248 HKQTRLYGITIALSQC 263 (267)
T ss_dssp SSCCCCCCEEEECSCC
T ss_pred ccccccceeeecCccC
Confidence 43 2477888888764
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.26 E-value=5.6e-09 Score=95.36 Aligned_cols=281 Identities=7% Similarity=-0.033 Sum_probs=161.4
Q ss_pred CCCEEEEecCCCeEEEEECCCCceEEEeecCC--------CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGH--------NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 72 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
++..++.++.++.|..+|.++|+.+.+..... ...+.+. ... ++..++.++.++.+..+|..+++..-.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTV--SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceE--eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 35677778888999999999999887763321 1222221 122 556777888899999999988876544
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
...... ....... .++ .++.++.++.|..+|.++++.............. . ........ + ..++.++
T Consensus 129 ~~~~~~--~~~~p~~-~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~---~--~~~~~~~~-~--~~v~~g~ 195 (376)
T 3q7m_A 129 TKVAGE--ALSRPVV-SDG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL---R--GESAPTTA-F--GAAVVGG 195 (376)
T ss_dssp EECSSC--CCSCCEE-ETT--EEEEECTTSEEEEEETTTCCEEEEEECCC--------C--CCCCCEEE-T--TEEEECC
T ss_pred EeCCCc--eEcCCEE-ECC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee---c--CCCCcEEE-C--CEEEEEc
Confidence 222211 1111112 233 5778889999999999999887766542210000 0 00111222 2 3677788
Q ss_pred CCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCc
Q 012064 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPV 303 (471)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~ 303 (471)
.++.+..+|..+++.........+........+......++ . .++..++...++.+..+|..+++....
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~-~~~~v~~~~~~g~l~~~d~~tG~~~w~------ 264 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----V-VNGVVFALAYNGNLTALDLRSGQIMWK------ 264 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E-ETTEEEEECTTSCEEEEETTTCCEEEE------
T ss_pred CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----E-ECCEEEEEecCcEEEEEECCCCcEEee------
Confidence 89999999998877543322211100000000000001111 1 134344444477899999877532111
Q ss_pred cccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecC
Q 012064 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 383 (471)
.. ... ...+.. ++..++.++.++.|..+|..+++.+.....
T Consensus 265 --------------------------------~~--~~~--~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 265 --------------------------------RE--LGS--VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp --------------------------------EC--CCC--EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred --------------------------------cc--CCC--CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 11 011 222322 355777888899999999999988766652
Q ss_pred -CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 384 -DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 384 -h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
....+..... .+..|+.++.+|.|+++|..+++..
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 2222222232 2467888888999999999988763
No 232
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.25 E-value=2.9e-08 Score=99.95 Aligned_cols=300 Identities=10% Similarity=0.078 Sum_probs=178.6
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 64 V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
|.++...++|.+.+ ++.++-|..|+..+++............|.++...+ ++...+.. .++-+..||..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g~lwigt-~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PTRIWVAT-EGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TTEEEEEE-BSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CCCEEEEE-CCCCeEEEeCCCCeEEEe
Confidence 88888888887666 555444888998776653221122345788888887 77765544 343488888765432211
Q ss_pred eEe-----eceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 144 KLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 144 ~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
... .-....|.++...+++. +..|+.+ .|.+||..+++....... .. .........|.++..++++ .
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~-~~--~~~~l~~~~i~~i~~D~~g--~ 322 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSN-PV--ENGSLSQRSVRSIFMDSQG--G 322 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCC-TT--STTSCSSSCEEEEEECTTS--C
T ss_pred ecCCCCccccCCCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecC-CC--CCCCCCCCcEEEEEEeCCc--C
Confidence 000 01235689999988883 5666665 588999877654322111 00 0011133468999999874 3
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~ 298 (471)
+..|+.++.|..|+....+...-... .....-....|.++...++|.+.+...++.+..|+..++.....
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~~---------~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~- 392 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRNI---------PYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSY- 392 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECCC---------TTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEE-
T ss_pred EEEEECCCCeEEeCCCcccceEEcCC---------CCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEE-
Confidence 55677777899998765532110000 00001124569999999999877766666899998765321000
Q ss_pred CCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee
Q 012064 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377 (471)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~ 377 (471)
. ....... ......|.++.. +++|+.|..|+.++-|..||..+++.
T Consensus 393 ~--------------------------------~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 393 T--------------------------------LQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp C--------------------------------CC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred e--------------------------------cCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 0 0000000 000113788887 88888566777777899999887754
Q ss_pred eEEec----CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 378 IRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 378 ~~~~~----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
..... .+...|.++...++|++.+... +.+.+|+..+++..
T Consensus 440 ~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 440 ENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFT 484 (795)
T ss_dssp EEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEE
T ss_pred EEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEE
Confidence 43221 1345789999988888766554 45888888765543
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.24 E-value=6.9e-11 Score=110.10 Aligned_cols=324 Identities=8% Similarity=-0.027 Sum_probs=185.6
Q ss_pred EEEecCCCeEEEEEcccCcccccc--ccc-eecc---cccceeeee------------eeE--EeccccccEEEEEEcC-
Q 012064 13 ARTSVDKALVDVWLRELGQLSTRN--FAL-RRRA---SEDLVLRLG------------IYA--KLDKHRGCVNTVSFNT- 71 (471)
Q Consensus 13 l~~~~~dg~i~iw~~~~~~~~~~~--~~~-~~~~---~~~~~~~~~------------~~~--~l~~h~~~V~~~~~s~- 71 (471)
+.+|+..|.++|+-+.+++.+.+. |.+ ...| .++...-+. ..- .+. .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~--~gd~hh~~~s~t 95 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD--NGDLHHVHMSFT 95 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCC--CCCBCCEEEEEE
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecc--cCCCCccccCCC
Confidence 778999999999999999888652 211 0000 000000000 000 010 11112234444
Q ss_pred ----CCCEEEEecC-CCeEEEEECCCCceEEEeecCCCcceeEEEE-e-cCCCCeEEEEEe------------------C
Q 012064 72 ----DGDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKI-M-PFTDDRSIVTCA------------------A 126 (471)
Q Consensus 72 ----~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~l~s~~------------------~ 126 (471)
||++|..... +++|.+.|+.+.++...+.-........+++ . | +++++++++ .
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p--~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC--CCcEEEEecccccccCCCCccccccccc
Confidence 7887776554 5689999999999877442233345778887 4 7 999998884 2
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCC-e--------------EEEEeccCCccceeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-L--------------VQHFDLRTGAATELFTC 191 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~--------------i~iwd~~~~~~~~~~~~ 191 (471)
++.+.++|..+.+........+ ....++++|+++ .+++.+.+. . +.++|....+
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------- 242 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------- 242 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-------
T ss_pred CceEEEEECCCCeEEEEEEeCC---CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeecccee-------
Confidence 4578899988765554433322 345678999995 455554432 2 3333322111
Q ss_pred cccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC
Q 012064 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD 271 (471)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (471)
.+.++| .+... +.|.+.|.++.+.. ....... -.....++.++|
T Consensus 243 ------------------~~v~~G-k~~~i----~~V~VID~~~~~~~------------~~~~~Ip-vg~~PhGv~~sP 286 (595)
T 1fwx_A 243 ------------------KAIAAG-DYQEL----NGVKVVDGRKEASS------------LFTRYIP-IANNPHGCNMAP 286 (595)
T ss_dssp ------------------HHHHHT-CSEEE----TTEEEEECSGGGCC------------SSEEEEE-EESSCCCEEECT
T ss_pred ------------------EeccCC-CeeEE----CcEEEEeCcccCCc------------eeEEEEe-cCCCceEEEEcC
Confidence 122342 23322 45999999873200 0000010 012356789999
Q ss_pred CCCeEEEee--CCcEEEEecCCCCCCC--CCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeee
Q 012064 272 QSELLVSYN--DEFIYLFTQDMGLGPN--PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG 347 (471)
Q Consensus 272 ~~~~l~~~~--~~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (471)
||++++.++ ++++.++|+.+.+... .+. ..........-... ...
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~----------------------------~~~~v~~~v~vG~g---P~h 335 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD----------------------------PRSAVVAEPELGLG---PLH 335 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC----------------------------GGGGEEECCBCCSC---EEE
T ss_pred CCCEEEEeCCCCCeEEEEECcccccccccccC----------------------------cccceEEEcCCCCC---cce
Confidence 999988877 5689999997531000 000 00001111111122 677
Q ss_pred eeeeCCCCcEEEEeeCCCeEEEEEccC----------CeeeEEecCCCcce-----EEEEEcCCCCEEEEeec---CCcE
Q 012064 348 VNFFGPKCEYVVSGSDCGRIFIWKKKG----------GELIRVIEADRHVV-----NCIEPHPHSTVLASSGI---ESDI 409 (471)
Q Consensus 348 ~~~~s~~g~~l~~g~~dg~v~iwd~~~----------~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~~~---dg~i 409 (471)
++| +|+|....+...|+.|.+||+.+ .+.+..+..|..+- ..+..+|||++|+++.. |..+
T Consensus 336 ~aF-~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~ 414 (595)
T 1fwx_A 336 TAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFL 414 (595)
T ss_dssp EEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSC
T ss_pred EEE-CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccc
Confidence 888 99994444566789999999987 55667776665432 22356899999998854 3321
Q ss_pred ----------EEecCCCCCC
Q 012064 410 ----------KILTPNAADR 419 (471)
Q Consensus 410 ----------~iw~~~~~~~ 419 (471)
.++|+.+++.
T Consensus 415 ~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 415 NVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCCSSCCEEEEEEECSSSSC
T ss_pred cCCCCCCCcceEEEcCCCcE
Confidence 7888866553
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=1.4e-09 Score=106.75 Aligned_cols=331 Identities=11% Similarity=0.101 Sum_probs=177.5
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcc---------e-eEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDN---------V-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 142 (471)
+..++.++.++.|.-+|..+|+.+.++....... + ..+.. ++..++.++.|+.+..+|..+++.+-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEee
Confidence 5567777778899999999999988873221111 0 11222 45678888889999999999988765
Q ss_pred eeEeeceeeeEEEEEEcc---CCCcEEEEEe------cCCeEEEEeccCCccceeeeecccCCcCcc-------------
Q 012064 143 TKLLGKHQGRAHKLAIEP---GSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDRRNY------------- 200 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------- 200 (471)
......+......+...| ++ . ++.++ .++.|+.||.++++.+..+...........
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNG-K-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eecCcCCCCCCccccCCcEEECC-E-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 432210100000111111 44 3 44443 378999999999998877653211000000
Q ss_pred --------eeeeeeEEEEEcCCCCceEEEEeCCCe-------------------EEEEEcCCCccCCCCCCCCCCCcCCC
Q 012064 201 --------MTVVNLNAIAIDPRNANLFAVAGSDEY-------------------TRLYDIRKYKWDGSTDFGQPADYFCP 253 (471)
Q Consensus 201 --------~~~~~v~~~~~~p~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (471)
........++++|+ ..+++.+..++. |..+|.++++.......... ...
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~-d~w-- 299 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG-DAW-- 299 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT-CCS--
T ss_pred CceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc-ccc--
Confidence 01111236788887 567888877764 99999999876543222100 000
Q ss_pred CcccCCCccceEEEEEcCCCC---eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCC-Ccc
Q 012064 254 PNLIGDEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA-NTD 328 (471)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~---~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 328 (471)
. .. ...+..-.....+|+ .++.++ ++.++++|..+++.+...+..+.... ..... .....+...... ...
T Consensus 300 -d-~~-~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~-~~~~~-~~~~pi~~~~~~~~~~ 374 (689)
T 1yiq_A 300 -D-YT-ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT-KGMDM-KTGRPILDEENAAYWK 374 (689)
T ss_dssp -C-CC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-EEEET-TTTEEEECHHHHCTTT
T ss_pred -c-cc-CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc-cccCc-cCCCcccchhhccccC
Confidence 0 00 011111122223554 566666 67899999999876533222111100 00000 000000000000 000
Q ss_pred cccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC---------------------------------------------
Q 012064 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD--------------------------------------------- 363 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~--------------------------------------------- 363 (471)
.........+......-..++| +|+..++++...
T Consensus 375 ~~~~~~~~p~~~Gg~~w~~~a~-dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~ 453 (689)
T 1yiq_A 375 NGKRNLVTPAFWGAHDWQPMSY-NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSW 453 (689)
T ss_dssp SSSCEEESSCTTCSSCSSCCEE-ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTC
T ss_pred CCCeeEeCCCcccccCCCcceE-CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCc
Confidence 0000000110000000123555 666665554321
Q ss_pred CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 364 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
+|.|+.||+.+|+.+-.++.+. +...-.+...+.+++.++.||.|+.||.++++..
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4789999999999988776554 3333455667889999999999999999998764
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.22 E-value=3.7e-09 Score=95.09 Aligned_cols=252 Identities=12% Similarity=0.054 Sum_probs=146.5
Q ss_pred CCCcEE-EEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEec------c-ccccEEEEEEcCCCCEEEEe
Q 012064 8 NNNKRA-RTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD------K-HRGCVNTVSFNTDGDILISG 79 (471)
Q Consensus 8 ~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~-h~~~V~~~~~s~~g~~l~s~ 79 (471)
.++++| +.|..++.|.+.|..+.... .++.+.+. . ....-..+..+|+| +++++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-----------------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE-----------------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS-----------------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC-----------------ceeeeeechhhcccccCCCcccceeECCCe-EEEEc
Confidence 666664 56777899999998743111 12223331 1 11245667889999 77666
Q ss_pred cCC------CeEEEEECCCCceEEEeecCCC--cceeEEEEecCCCCeEEEEEe-------------------CCCeEEE
Q 012064 80 SDD------RRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCA-------------------ADGQVRH 132 (471)
Q Consensus 80 ~~d------~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~-------------------~dg~i~i 132 (471)
..+ +.|.+.|.++++.+.++..+-. ..-+.+.|+| +++.+++.. ...+|.+
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 554 7899999999999888743311 2245688899 999888874 3679999
Q ss_pred EeccccCcceeeEeeceeeeEEEEEE--ccCCCcEEEEEe-----cCCeEEEEeccCCcccee--eeeccc--C-CcC--
Q 012064 133 AQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCG-----EDGLVQHFDLRTGAATEL--FTCRPI--D-DRR-- 198 (471)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~--~~~~~~--~-~~~-- 198 (471)
||+.+++......+.........+.| +|+++..++++- .++.|.+|..+.++.... +..... . ..+
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 99988655554333212233445555 999976655555 677898887765432111 111110 0 000
Q ss_pred --ccee-eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC---ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC
Q 012064 199 --NYMT-VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY---KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (471)
Q Consensus 199 --~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (471)
+... ......+.++||+..+.++.-..+.|.+||+... ++......+.......... -..-...-..++++||
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~-G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPA-GHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTT-SCCCCSCCCCEEECTT
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccc-cccCCCCCCEEEEcCC
Confidence 0000 2346889999995444444446789999998632 2222211111000000000 0000123577899999
Q ss_pred CCeEEEee
Q 012064 273 SELLVSYN 280 (471)
Q Consensus 273 ~~~l~~~~ 280 (471)
|++|++++
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99888776
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.21 E-value=1.7e-09 Score=97.32 Aligned_cols=235 Identities=8% Similarity=0.031 Sum_probs=143.3
Q ss_pred CCCCCCCCcEEEEec--CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEec
Q 012064 3 DASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~ 80 (471)
.++++++++.+++.. .++.++||.+.+|++.. +.... ....+|-..+..++++++|+++++..
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~--~p~~~-------------~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIP--FPPQS-------------GNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEE--SCCCC-------------SSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCeec--CCCcc-------------cCcccceeEeeEEEEcCCCcEEEEcC
Confidence 456788998888853 23446777776454321 10000 01224667899999999998776553
Q ss_pred C-----CCeEEEEECCCCceEEEeecC-----CCcceeEEEEecCCCCeE-EEEEe---CCCeEEEEeccccCcceeeEe
Q 012064 81 D-----DRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRS-IVTCA---ADGQVRHAQILERGGVETKLL 146 (471)
Q Consensus 81 ~-----d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~-l~s~~---~dg~i~iwd~~~~~~~~~~~~ 146 (471)
. ++.|.+||+.+++.+..+... +......+++.| ++.. +++-. .++.|.+||+.+++.... +
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~--~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~--~ 161 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL--IHNFVYISDPAPDDKAALIRVDLQTGLAARV--L 161 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET--TTTEEEEEECCSGGGCEEEEEETTTCCEEEE--C
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEec--CCCEEEEEcCccCCCCeEEEEECCCCCEEEE--e
Confidence 3 578999999998876665321 224568999997 6544 45544 578999999876543221 1
Q ss_pred ece-----------------------------eeeEEEEEEccCCCcEEEEEecCC-eEEEEeccC---Ccc-----cee
Q 012064 147 GKH-----------------------------QGRAHKLAIEPGSPHVFYTCGEDG-LVQHFDLRT---GAA-----TEL 188 (471)
Q Consensus 147 ~~~-----------------------------~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~---~~~-----~~~ 188 (471)
..| ...+..++|+|++. .++.+..++ .+..++... +.. ...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 110 12368899999995 455555444 555555321 110 000
Q ss_pred eeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccC-CCccceEEE
Q 012064 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGL 267 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 267 (471)
+... + .......++++++ ++++++...++.|.+||..+++.. .+.. .......++
T Consensus 241 ~~~~------g--~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~~---------------~~~~~~~~~~p~~v 296 (343)
T 2qe8_A 241 IERY------S--EKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAYK---------------LLVTDEKLSWTDSF 296 (343)
T ss_dssp CEEE------E--ECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEEE---------------EEEECGGGSCEEEE
T ss_pred eEec------c--cCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCEE---------------EEEECCceecCCee
Confidence 0000 0 1123567999998 688888888999999998444321 0111 113457899
Q ss_pred EEcCCCCeEEEeeC
Q 012064 268 AFSDQSELLVSYND 281 (471)
Q Consensus 268 ~~~~~~~~l~~~~~ 281 (471)
++.++++++++.+.
T Consensus 297 a~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 297 NFGSDGYLYFDCNQ 310 (343)
T ss_dssp EECTTSCEEEEECC
T ss_pred EECCCCcEEEEeCc
Confidence 99999887777653
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=1.4e-09 Score=106.64 Aligned_cols=325 Identities=11% Similarity=0.060 Sum_probs=180.4
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcc----------eeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDN----------VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 142 (471)
+..|+.++.++.|.-+|..+|+.+.++....... ...+.+ ++..++.++.|+.+..+|..+++.+-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4566667778899999999999988874221110 112333 45678888889999999999888765
Q ss_pred eeEee-cee--eeEEEEEEccCCCcEEEEEec------CCeEEEEeccCCccceeeeecccCCcC---------------
Q 012064 143 TKLLG-KHQ--GRAHKLAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRR--------------- 198 (471)
Q Consensus 143 ~~~~~-~~~--~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------- 198 (471)
..... ... ..+.+--...++ . +++++. ++.|+.+|.++++.+..+.........
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~-~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVFKG-K-VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eecCCcCcCcCcccccCcEEECC-E-EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 43221 000 111110011133 3 455543 799999999999988777653322100
Q ss_pred --c--c---eeeeeeEEEEEcCCCCceEEEEeCCC-------------------eEEEEEcCCCccCCCCCCCCCCCcCC
Q 012064 199 --N--Y---MTVVNLNAIAIDPRNANLFAVAGSDE-------------------YTRLYDIRKYKWDGSTDFGQPADYFC 252 (471)
Q Consensus 199 --~--~---~~~~~v~~~~~~p~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (471)
+ + ........++++|+ ..+++.+..++ .|..+|.++++....+...... ..
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d-~w- 307 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD-NW- 307 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC-CS-
T ss_pred ccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc-cc-
Confidence 0 0 01112236788898 46777776654 4999999988765433221100 00
Q ss_pred CCcccCCCccceEEEEEcCCC---CeEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcc
Q 012064 253 PPNLIGDEQVGITGLAFSDQS---ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (471)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~---~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (471)
-... .....-+....+| ..++.++ ++.++++|..+++.+......+..... .+...+..+...... .
T Consensus 308 ---d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~---~~d~~g~~~~~~~~~-~- 378 (677)
T 1kb0_A 308 ---DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS---GYDKHGKPIGIAAAR-D- 378 (677)
T ss_dssp ---CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE---EECTTSCEEECGGGG-C-
T ss_pred ---cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc---ccCCCCceeeccccC-c-
Confidence 0000 1112222333466 4666666 678999999998765443222111000 000000000000000 0
Q ss_pred cccCCeee---ecCCceeEeeeeeeeCCCCcEEEEeeC------------------------------------------
Q 012064 329 VRIAPQVY---KGHRNCVTVKGVNFFGPKCEYVVSGSD------------------------------------------ 363 (471)
Q Consensus 329 ~~~~~~~~---~~~~~~~~i~~~~~~s~~g~~l~~g~~------------------------------------------ 363 (471)
.......+ .+... -..+++ +|++.++++...
T Consensus 379 ~~~~~~~~P~~~G~~~---w~~~a~-dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 454 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHN---WHPMSF-NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSK 454 (677)
T ss_dssp TTSCEECSSCTTCSSC---SSCCEE-ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSC
T ss_pred CCCccEECcCcccccC---CCCceE-cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCC
Confidence 00000000 11111 124566 787777766432
Q ss_pred -CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 364 -dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
.|.|..||+.+++.+-.+.. ..++....+..++.+++.++.||.+++||..+++..
T Consensus 455 ~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 455 PFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 27899999999998877653 334455556677888888999999999999998763
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.19 E-value=1e-08 Score=86.64 Aligned_cols=205 Identities=10% Similarity=0.043 Sum_probs=136.7
Q ss_pred CCCCCCCcEEEEecC--CCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC
Q 012064 4 ASNNNNNKRARTSVD--KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~ 81 (471)
+.+++++.+.++.+. ++.|++.|..+++.+.+ + .+..+. ....+++.. ++..++.-.
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~---------------i----~l~~~~-fgeGi~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENI---------------H----KMDDSY-FGEGLTLLN-EKLYQVVWL 84 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE---------------E----ECCTTC-CEEEEEEET-TEEEEEETT
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE---------------E----ecCCCc-ceEEEEEeC-CEEEEEEec
Confidence 456777655555443 68999999999998731 0 112221 112345542 244445556
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee---eEEEEEE
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAI 158 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~ 158 (471)
++.+.++|..+.+.+.++..+ ... ...+++ |++.++.+..++.|.++|..+.+............ .++.+.|
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SSS--CCEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECC-CCC--eEEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 789999999999998888544 122 234566 88888877788999999998877665533332222 3667888
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCC---cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
. ++ .+++....++.|.+.|+++++....+....... ..........+.++|+|++..+++++...+.+...++..
T Consensus 160 ~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 160 I-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp E-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred E-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 7 66 566666668899999999999988887532100 000001235689999999777888888899999999876
Q ss_pred C
Q 012064 236 Y 236 (471)
Q Consensus 236 ~ 236 (471)
.
T Consensus 238 ~ 238 (266)
T 2iwa_A 238 V 238 (266)
T ss_dssp C
T ss_pred c
Confidence 4
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.16 E-value=7.4e-07 Score=89.78 Aligned_cols=296 Identities=8% Similarity=0.080 Sum_probs=179.5
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecC-------CCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG-------HNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
...|.++...++|.+.+. +.+| |.+||..+++.. .+... ....|.++...+ +|. |..|+.++-|..+
T Consensus 262 ~~~i~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~--~g~-lWigt~~~Gl~~~ 335 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIG-TFND-LNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDS--QGG-MWLGTYFGGLNYY 335 (795)
T ss_dssp CSBEEEEEECTTSCEEEE-ESSC-EEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECT--TSC-EEEEESSSCEEEE
T ss_pred CCeEEEEEEcCCCCEEEE-eCCh-hheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeC--CcC-EEEEECCCCeEEe
Confidence 467999999999886654 4455 889998776543 33111 235688998887 665 4556666778888
Q ss_pred eccccCcceeeEe----eceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEE
Q 012064 134 QILERGGVETKLL----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (471)
Q Consensus 134 d~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (471)
+............ .-....|.++...+++. +..|+.++-|..||..+++............ .. .....|.++
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~-~~-l~~~~v~~i 411 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESA-RG-IGSNNIKAV 411 (795)
T ss_dssp CGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC-------C-CSCSCEEEE
T ss_pred CCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcc-cC-CCCccEEEE
Confidence 8765443211000 01235689999888873 6778888889999988765432211100000 00 022468899
Q ss_pred EEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEec
Q 012064 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~ 289 (471)
+.+++ +.+|..|+.++.+..||..+++...-.. .. .......|.++...++|++.++.. +.+.+|+.
T Consensus 412 ~~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~~~~----------~~-~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~ 478 (795)
T 4a2l_A 412 YVDEK-KSLVYIGTHAGGLSILHRNSGQVENFNQ----------RN-SQLVNENVYAILPDGEGNLWLGTL-SALVRFNP 478 (795)
T ss_dssp EEETT-TTEEEEEETTTEEEEEETTTCCEEEECT----------TT-SCCSCSCEEEEEECSSSCEEEEES-SCEEEEET
T ss_pred EEcCC-CCEEEEEeCcCceeEEeCCCCcEEEeec----------CC-CCcCCCeeEEEEECCCCCEEEEec-CceeEEeC
Confidence 98887 5546677887889999988765321100 00 001235689999999998776665 67999987
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEE
Q 012064 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (471)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~i 369 (471)
.++..... .. ......+ .. ..|.++.. +++|++.+... +-+..
T Consensus 479 ~~~~~~~~-~~-----------------------------~~~~~~~--~~--~~i~~i~~-d~~g~lWigt~--~Gl~~ 521 (795)
T 4a2l_A 479 EQRSFTTI-EK-----------------------------EKDGTPV--VS--KQITTLFR-DSHKRLWIGGE--EGLSV 521 (795)
T ss_dssp TTTEEEEC-CB-----------------------------CTTCCBC--CC--CCEEEEEE-CTTCCEEEEES--SCEEE
T ss_pred CCCeEEEc-cc-----------------------------ccccccc--CC--ceEEEEEE-CCCCCEEEEeC--CceEE
Confidence 65321000 00 0000000 01 13778877 88887655443 45888
Q ss_pred EEccCCeeeEEec-------CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 370 WKKKGGELIRVIE-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 370 wd~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
||..+++. .+. .....|.++...++|++.++.. . -|..|+..+++..
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 99877665 222 1234689999999998776554 3 5888887765443
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.14 E-value=8.9e-11 Score=106.58 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee
Q 012064 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (471)
Q Consensus 72 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 151 (471)
++..+++++.|+.|..||..+|+.+.++. . +.+.+..+.+ ++..+++++.||.++.||..+++.... +..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccCc
Confidence 57789999999999999999999988873 3 4555555666 777888888999999999988776543 221211
Q ss_pred -eEE-EEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEE
Q 012064 152 -RAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (471)
Q Consensus 152 -~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (471)
.+. +..+. .+ ..+++++.++.++.||.++++....+.... ...++|+ +..+++++.++.|+
T Consensus 81 ~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--------------~~~~~p~-~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 81 ELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--------------ADSLSPS-TSLLYLGRTEYTIT 143 (369)
T ss_dssp HHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------------EEEEEEEEEEE
T ss_pred cccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC--------------ccccccc-CCEEEEEecCCEEE
Confidence 110 01111 23 346788889999999999998776654211 1234555 45777777788888
Q ss_pred EEEcCCCc
Q 012064 230 LYDIRKYK 237 (471)
Q Consensus 230 i~d~~~~~ 237 (471)
.||.++++
T Consensus 144 a~d~~tG~ 151 (369)
T 2hz6_A 144 MYDTKTRE 151 (369)
T ss_dssp CCCSSSSS
T ss_pred EEECCCCC
Confidence 88887765
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=1.6e-08 Score=98.98 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=120.3
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEecccc-ccE-EEEEEcCCCCEEEEecCCCeEEE
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL 87 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V-~~~~~s~~g~~l~s~~~d~~i~i 87 (471)
+..+++++.++.|..+|.++|+.+-+.-...... ....+. ..+ ..+++ ++..++.++.|+.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKV------------KARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGG------------GGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcc------------ccccccccCCccceEE--ECCEEEEEcCCCEEEE
Confidence 5567777788999999999998773211000000 000000 000 11122 3457778888999999
Q ss_pred EECCCCceEEEeecCCCcceeEEEEecCC-CCeEEEEEeC------CCeEEEEeccccCcceeeEeec------------
Q 012064 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAA------DGQVRHAQILERGGVETKLLGK------------ 148 (471)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~------------ 148 (471)
+|..+|+.+.++..........+.-+|.- ++. ++.+.. +|.|..+|..+++.+-......
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 99999999888743221111111111100 444 444432 5889999998887654422110
Q ss_pred -----------------eeeeEEEEEEccCCCcEEEEEecCC-------------------eEEEEeccCCccceeeeec
Q 012064 149 -----------------HQGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFTCR 192 (471)
Q Consensus 149 -----------------~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 192 (471)
+......+++.|+. .+++.++.++ .|..+|.++++....++..
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 00111246788877 4667776655 4999999999988887653
Q ss_pred ccCCcCcceeeeeeEEEEEcCCCCc---eEEEEeCCCeEEEEEcCCCccC
Q 012064 193 PIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWD 239 (471)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~ 239 (471)
..... .+....+.....+..+ +. .++.++.+|.++++|.+++++.
T Consensus 290 ~~~~w-d~~~~~~~~~~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 290 PGDSW-DFTATQQITLAELNID-GKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCccc-cccCCCCcEEEEeccC-CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 21110 0000111122222223 33 6888999999999999998865
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.09 E-value=4.3e-07 Score=78.36 Aligned_cols=231 Identities=10% Similarity=0.056 Sum_probs=138.6
Q ss_pred eEEEEEeCCCeEEEEeccccCcce---eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccC
Q 012064 119 RSIVTCAADGQVRHAQILERGGVE---TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (471)
Q Consensus 119 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (471)
.+|+.+.. +.|+.+++....... ...+......+.+++|++++.+++++-..++.|..+++.......... .
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~--- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-Q--- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-T---
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-C---
Confidence 45555553 478888876543211 111222345678999999776777777778899999997665332221 0
Q ss_pred CcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe
Q 012064 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (471)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (471)
.......++++|+++.++++-...+.|.++++..... ..+..........++++|++..
T Consensus 77 ------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---------------~~~~~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 77 ------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---------------RVLFDTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp ------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEETTTTE
T ss_pred ------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---------------EEEEECCCCCccEEEEeeCCCE
Confidence 1124688999997566666666778999999864321 0111111234688999997655
Q ss_pred EEEee-C---CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeee
Q 012064 276 LVSYN-D---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNF 350 (471)
Q Consensus 276 l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 350 (471)
|..+. . +.|..++++... ...+. .... ....+++
T Consensus 136 lyv~~~~~~~~~I~~~~~dg~~---------------------------------------~~~~~~~~~~--~P~gia~ 174 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDGTN---------------------------------------RRILAQDNLG--LPNGLTF 174 (267)
T ss_dssp EEEEECCSSSCEEEEEETTSCC---------------------------------------CEEEECTTCS--CEEEEEE
T ss_pred EEEEECCCCCcEEEEEecCCCC---------------------------------------cEEEEECCCC--CCcEEEE
Confidence 54443 2 467777765321 11111 1111 2567888
Q ss_pred eCCCCcEEEEe-eCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 351 FGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 351 ~s~~g~~l~~g-~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+++++.|+.+ ...+.|.++|.........+.. ......++.. .+.++++....+.|.+++..+++.
T Consensus 175 -d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 175 -DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp -ETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred -cCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc
Confidence 9987666554 4568999999875544333332 2334566654 344444444568999999987764
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.09 E-value=6.8e-08 Score=80.58 Aligned_cols=219 Identities=12% Similarity=0.079 Sum_probs=139.0
Q ss_pred eeeeeeeEEecccc--ccEEEEEEcCCCCEEEEecCCC--eEEEEECCCCceEEEeecCCCcceeEEEEecCCCC-eEEE
Q 012064 48 VLRLGIYAKLDKHR--GCVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIV 122 (471)
Q Consensus 48 ~~~~~~~~~l~~h~--~~V~~~~~s~~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~ 122 (471)
....++++++. |. .....+.|+ ++.++.+.+.+| .|+++|+++++.+.++..+ .........+ ++ +..+
T Consensus 28 ~~~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~--~g~~ly~ 101 (262)
T 3nol_A 28 IYDYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISD--WKDKIVG 101 (262)
T ss_dssp EEEEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEE--ETTEEEE
T ss_pred ccceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--CccceeEEEE--eCCEEEE
Confidence 34556777774 54 345789998 777777777766 8999999999998887432 3343333333 33 4444
Q ss_pred EEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCccee
Q 012064 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 123 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
..-.++.+.++|..+.+.+.+..... ....+.+++..+ +.+..++.|.++|.++.+....+....... .
T Consensus 102 ltw~~~~v~v~D~~t~~~~~ti~~~~-----eG~glt~dg~~L-~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~-----~ 170 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQVRSFNYDG-----EGWGLTHNDQYL-IMSDGTPVLRFLDPESLTPVRTITVTAHGE-----E 170 (262)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSS-----CCCCEEECSSCE-EECCSSSEEEEECTTTCSEEEEEECEETTE-----E
T ss_pred EEeeCCEEEEEECccCcEEEEEECCC-----CceEEecCCCEE-EEECCCCeEEEEcCCCCeEEEEEEeccCCc-----c
Confidence 44568899999999888776643332 223334567554 444457889999999998887776532100 1
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (471)
...++.+.|. + +.+.+..-.++.|.+.|.++++......+......... ........+.++|+|+++.|...+..
T Consensus 171 ~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~---~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 171 LPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP---LPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS---CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc---ccCcCCceEEEEEcCCCCEEEEECCC
Confidence 1234567776 4 56666666788999999999987766555322111000 11123456899999998877766654
Q ss_pred cEEEEe
Q 012064 283 FIYLFT 288 (471)
Q Consensus 283 ~i~i~d 288 (471)
--++|.
T Consensus 246 Wp~~~e 251 (262)
T 3nol_A 246 WPKVFE 251 (262)
T ss_dssp CSEEEE
T ss_pred CCceEE
Confidence 333333
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=1.6e-07 Score=79.46 Aligned_cols=225 Identities=6% Similarity=-0.013 Sum_probs=140.9
Q ss_pred eeeeeEEeccccc--cEEEEEEcCCCCEEEEecC--CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 50 RLGIYAKLDKHRG--CVNTVSFNTDGDILISGSD--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 50 ~~~~~~~l~~h~~--~V~~~~~s~~g~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
..+.++++. |.. ....++|+||+.++++.+. ++.|.+.|+.+++.+..+..+.......+++. ++...++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEe
Confidence 445666664 443 4689999999766665543 57999999999999888743322222344554 234445555
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.++.+.++|..+.+.+...... .. ....+++++..++++ ..++.|.++|.++.+....+....... ....
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g--~~--~g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~-----p~~~ 153 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ--MK--DGWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGH-----RVIR 153 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC--SS--SCCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTE-----ECCC
T ss_pred cCCEEEEEECCCCcEEEEEECC--CC--CeEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCc-----cccc
Confidence 6889999999887766553222 11 123456677665554 468899999999988877766432100 1123
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCc
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEF 283 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~ 283 (471)
++.+.|. + +.+.+....++.|.+.|..+++......+....... .............++|+|+++.+..++ .++
T Consensus 154 ~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~--~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 154 LNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL--IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH--HHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred ceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc--ccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 5677887 5 566666657889999999998866554331000000 000001123568999999987665554 567
Q ss_pred EEEEecCCC
Q 012064 284 IYLFTQDMG 292 (471)
Q Consensus 284 i~i~d~~~~ 292 (471)
++..++...
T Consensus 230 v~~i~l~~~ 238 (266)
T 2iwa_A 230 LFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 888887653
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=3.5e-09 Score=98.79 Aligned_cols=194 Identities=10% Similarity=0.032 Sum_probs=131.2
Q ss_pred CCCcEEEEec-CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEE-c-CCCCEEEEec----
Q 012064 8 NNNKRARTSV-DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF-N-TDGDILISGS---- 80 (471)
Q Consensus 8 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-s-~~g~~l~s~~---- 80 (471)
+||++|.... .+..|.+-|+.+.++.. ++ .+. .......+++ + |++++++.++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~------------------ii-~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDA------------------IL-EIP-NAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEE------------------EE-ECS-SCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEee------------------EE-eCC-CCCCCcceeeeecCCCcEEEEeccccc
Confidence 3677766554 46789999999877652 11 222 2234678887 5 8999988874
Q ss_pred --------------CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC------------------
Q 012064 81 --------------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG------------------ 128 (471)
Q Consensus 81 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------------------ 128 (471)
.++.+.+.|.++.+...++.-+- .-..++++| +|+++++.+.+.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECC--CCCEEEEEecCcccCcchhhccccccceEE
Confidence 34689999999998888875432 345677899 999988887543
Q ss_pred --------------------eEEEEeccc--cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc
Q 012064 129 --------------------QVRHAQILE--RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (471)
Q Consensus 129 --------------------~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 186 (471)
.|.+.|..+ ++... ..+. -.....++.++|||+++++++..+.+|.++|+++.+..
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~-~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT-RYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE-EEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccCCceeE-EEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 356666655 22211 1122 22356789999999888888888899999999865311
Q ss_pred --------eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 187 --------ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 187 --------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
....... ........++|+|+| +..++...|++|..||+..
T Consensus 313 ~~~~l~~~~~v~~~v-------~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 313 FYENADPRSAVVAEP-------ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHSCCCGGGGEEECC-------BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cccccCcccceEEEc-------CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 0000000 023357889999995 6667778999999999976
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.05 E-value=1.4e-08 Score=84.77 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=122.7
Q ss_pred CCCCCCcEEEEecCCC--eEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEE-ecC
Q 012064 5 SNNNNNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSD 81 (471)
Q Consensus 5 ~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s-~~~ 81 (471)
.|+ ++.+..+++.+| .|+++|+++|+.+. ++.-. .........++++.|.. .-.
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~---------------------~~~l~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ---------------------QIELG-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEE---------------------EEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEE---------------------EEecC-CccceeEEEEeCCEEEEEEee
Confidence 345 566666777666 99999999999873 22211 12222222223444443 445
Q ss_pred CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee---eeEEEEEE
Q 012064 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAI 158 (471)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~ 158 (471)
++.+.+||.++.+.+.++..+- ....+++ |++.|+.+..++.|.++|..+.+........... ..++.+.|
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~----eG~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDG----EGWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSS----CCCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred CCEEEEEECccCcEEEEEECCC----CceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 7899999999999998884332 2233445 7888887777889999999888776654343222 33455777
Q ss_pred ccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcC--cceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 159 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
. ++ .+++..-.+..|.+.|.++++....+......... ......-.+.++|+|++..++++|-.
T Consensus 180 ~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 180 V-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp E-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred E-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6 56 56666667889999999999998888765332111 11123356899999996666666543
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.04 E-value=1.8e-08 Score=83.94 Aligned_cols=186 Identities=9% Similarity=0.016 Sum_probs=123.5
Q ss_pred CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEE
Q 012064 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (471)
Q Consensus 9 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iw 88 (471)
++.+..+.+.+|.|+++|+++|+.+.+ .+..+. .--.+++..+ ++.+..-.++.+.+|
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~--------------------~l~~~~-FgeGit~~g~-~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWM--------------------ERLGNI-FAEGLASDGE-RLYQLTWTEGLLFTW 121 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEE--------------------EECTTC-CEEEEEECSS-CEEEEESSSCEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeE--------------------ECCCCc-ceeEEEEeCC-EEEEEEccCCEEEEE
Confidence 356777888889999999999998841 122111 1122444332 344444568899999
Q ss_pred ECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceee---eEEEEEEccCCCcE
Q 012064 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPHV 165 (471)
Q Consensus 89 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~ 165 (471)
|.++.+.+.++... ..-..++ + |++.|+.+..++.|.++|..+.+.........+.. .++.+.|. +| .+
T Consensus 122 D~~Tl~~~~ti~~~--~eGwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~l 193 (268)
T 3nok_A 122 SGMPPQRERTTRYS--GEGWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VI 193 (268)
T ss_dssp ETTTTEEEEEEECS--SCCCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred ECCcCcEEEEEeCC--CceeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EE
Confidence 99999999888432 2223444 4 77788877778999999998887766544433322 34667776 56 56
Q ss_pred EEEEecCCeEEEEeccCCccceeeeecccCCc-C--cceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-R--NYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
++..-.+..|.+.|.++++....+........ . ......-.+.++++|++..++++|-.
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 66555688999999999999888876432110 0 01122357899999987777776643
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=2.1e-06 Score=86.34 Aligned_cols=293 Identities=9% Similarity=0.017 Sum_probs=172.8
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEee-------------cCCCcceeEEEEecCCCCeEEEEEeCC
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-------------SGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~l~s~~~d 127 (471)
...|.++...++|.+.+ |+..+-|.++|..+++...... .-....|.++...+ +|. |..|..+
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence 46799999988887555 5553448888987665322110 01245688888876 665 5556656
Q ss_pred CeEEEEeccccCcceeeE-------eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcc
Q 012064 128 GQVRHAQILERGGVETKL-------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (471)
+-|..++........... .......|.++...+++. +..|+.++-|..||..++..... ... ..
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~-~~~--~~---- 403 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYN-KEN--RE---- 403 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC------------
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEc-cCC--CC----
Confidence 678888875543321100 001235688998888773 67788777899999876533221 100 00
Q ss_pred eeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee
Q 012064 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (471)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (471)
.....|.++...++ + .|..|+.++.+..+|.++++.... ... ......|.++...++|++.+...
T Consensus 404 ~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~----------~~~---~~~~~~v~~i~~d~~g~lwigt~ 468 (781)
T 3v9f_A 404 LLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQII----------ELE---KNELLDVRVFYEDKNKKIWIGTH 468 (781)
T ss_dssp CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEEEC----------CST---TTCCCCEEEEEECTTSEEEEEET
T ss_pred CCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEEEe----------ccC---CCCCCeEEEEEECCCCCEEEEEC
Confidence 02346889988876 3 355577777799999876543211 000 11245688999998887666554
Q ss_pred CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEE
Q 012064 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (471)
Q Consensus 281 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~ 360 (471)
+.+..|+..++...... ... ........+.++.. +++|++.+
T Consensus 469 -~Gl~~~~~~~~~~~~~~---------------------------------~~~--~~~~~~~~i~~i~~-d~~g~lWi- 510 (781)
T 3v9f_A 469 -AGVFVIDLASKKVIHHY---------------------------------DTS--NSQLLENFVRSIAQ-DSEGRFWI- 510 (781)
T ss_dssp -TEEEEEESSSSSCCEEE---------------------------------CTT--TSSCSCSCEEEEEE-CTTCCEEE-
T ss_pred -CceEEEeCCCCeEEecc---------------------------------cCc--ccccccceeEEEEE-cCCCCEEE-
Confidence 77999997654211000 000 00000113778877 88887555
Q ss_pred eeCCCeEEEEEccCCeeeEEecC----CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcc
Q 012064 361 GSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (471)
Q Consensus 361 g~~dg~v~iwd~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 421 (471)
|+.++-+..||..+++.. .+.. ....|.++...++|++.++.. +|.+..|+..+++...
T Consensus 511 gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 511 GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV 573 (781)
T ss_dssp EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE
T ss_pred EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE
Confidence 444334777887665443 3321 134689999999998776554 6655889987765543
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.01 E-value=6e-08 Score=92.99 Aligned_cols=211 Identities=10% Similarity=0.046 Sum_probs=115.6
Q ss_pred CcEEEEecC-CCeEEEEEc-ccCccccccccceecccccceeeeeeeEEecccc----ccE-EEEEEcCCCCEEEEecCC
Q 012064 10 NKRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR----GCV-NTVSFNTDGDILISGSDD 82 (471)
Q Consensus 10 ~~~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~----~~V-~~~~~s~~g~~l~s~~~d 82 (471)
+..+++++. ++.|.-+|. ++|+.+-+.... .....+. ..+ ..+++ ++..++.++.|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~d 124 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPK---------------QDASTKAVMCCDVVDRGLAY--GAGQIVKKQAN 124 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCC---------------CCGGGGGGCTTCSCCCCCEE--ETTEEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCC---------------CCccccccccccccccccEE--ECCEEEEEeCC
Confidence 445666666 888999999 888876311000 0000000 000 01122 35567778889
Q ss_pred CeEEEEECCCCceEEEeecCC-Cc--ceeE-EEEecCCCCeEEEEEeC------CCeEEEEeccccCcceeeEeecee--
Q 012064 83 RRVILWDWKTERVKLSFHSGH-ND--NVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQ-- 150 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~-~~--~v~~-~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~-- 150 (471)
+.+..+|..+|+.+.+..... .. .+.+ ... . ++. ++.++. ++.|..+|..+++.+-........
T Consensus 125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~--~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~ 200 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-A--KDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDS 200 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E--TTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred CEEEEEECCCCCEEEEecCCCCCccceeccCCEE-E--CCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccc
Confidence 999999999999988763221 10 1211 111 1 444 444443 789999999888765432221110
Q ss_pred ---------------------------------e-eEEEEEEccCCCcEEEEEecC----------------CeEEEEec
Q 012064 151 ---------------------------------G-RAHKLAIEPGSPHVFYTCGED----------------GLVQHFDL 180 (471)
Q Consensus 151 ---------------------------------~-~v~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~ 180 (471)
. ....+++.++.. +++.+..+ +.|..+|.
T Consensus 201 ~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~ 279 (571)
T 2ad6_A 201 VRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL 279 (571)
T ss_dssp HTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEET
T ss_pred cccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEec
Confidence 0 001245666553 44544421 36999999
Q ss_pred cCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCCccCCCCC
Q 012064 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (471)
++++....++..............++ -+...+++. ..++.++.+|.++++|..+++......
T Consensus 280 ~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 280 DTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp TTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 99998877764321100000011111 122223422 357778899999999999987654433
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.01 E-value=2.4e-08 Score=89.26 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=131.2
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
+..+..++.++.|..+|.. ++..... ..+...+.++...+ ++. +..++.++.+..+|.. ++.... .......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~--~g~-l~vgt~~~~l~~~d~~-g~~~~~--~~~~~~~ 178 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSE--DGT-IYVGSNDNYLYAINPD-GTEKWR--FKTNDAI 178 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECT--TSC-EEEECTTSEEEEECTT-SCEEEE--EECSSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcC--CCE-EEEEcCCCEEEEECCC-CCEeEE--EecCCCc
Confidence 4456677888999999988 7776665 34445566666665 555 6667778899999987 544333 3333445
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
+.++.+.+++ . ++.++ +.+..+| .+++....... ....+.++..+++ + .+..++.++.+..+|
T Consensus 179 ~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~~~~~~~~----------~~~~~~~~~~~~~-g-~l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 179 TSAASIGKDG-T-IYFGS--DKVYAIN-PDGTEKWNFYA----------GYWTVTRPAISED-G-TIYVTSLDGHLYAIN 241 (330)
T ss_dssp CSCCEECTTC-C-EEEES--SSEEEEC-TTSCEEEEECC----------SSCCCSCCEECTT-S-CEEEEETTTEEEEEC
T ss_pred eeeeEEcCCC-E-EEEEe--CEEEEEC-CCCcEEEEEcc----------CCcceeceEECCC-C-eEEEEcCCCeEEEEC
Confidence 6667777777 3 45555 7899999 66665544432 1234677788876 3 456677788888887
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCcccccccccc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 312 (471)
..... ..... .....+..+...+++.+.+...++.+..+|. +++
T Consensus 242 ~~g~~-~~~~~---------------~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~------------------- 285 (330)
T 3hxj_A 242 PDGTE-KWRFK---------------TGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT------------------- 285 (330)
T ss_dssp TTSCE-EEEEE---------------CSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC-------------------
T ss_pred CCCCE-eEEee---------------CCCCccccceEcCCCeEEEecCCCCEEEECC-CCc-------------------
Confidence 53322 11100 0111122345566776666666778999985 321
Q ss_pred CCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccC
Q 012064 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (471)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~ 374 (471)
....+..... .+.++.. +++|+ |..|+.+|.+++...+.
T Consensus 286 -------------------~~~~~~~~~~--~~~~~~~-d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 286 -------------------EKWNFETGSW--IIATPVI-DENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -------------------EEEEEECSSC--CCSCCEE-CTTCC-EEEECTTSCEEEEEC--
T ss_pred -------------------EEEEEEcCCc--cccceEE-cCCCE-EEEEcCCCeEEEEeccc
Confidence 1111111111 1455555 67776 55688899999887643
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.01 E-value=1.2e-07 Score=90.74 Aligned_cols=216 Identities=10% Similarity=0.018 Sum_probs=118.7
Q ss_pred CcEEEEecC-CCeEEEEEc-ccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCE----EEEecCCC
Q 012064 10 NKRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI----LISGSDDR 83 (471)
Q Consensus 10 ~~~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~----l~s~~~d~ 83 (471)
+..+++++. ++.|.-+|. ++|+.+-+........... ....+ .....++++|.+.. ++.++.|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~---------~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg 131 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA---------VACCD-LVNRGLAYWPGDGKTPALILKTQLDG 131 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG---------GCSSC-SCCCCCEEECCCSSSCCEEEEECTTS
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccc---------ccccc-ccccceEEEecCCcceeEEEEEcCCC
Confidence 456666776 888999999 8888763111000000000 00000 00112345443433 77788899
Q ss_pred eEEEEECCCCceEEEeecCCCc---ceeE-EEEecCCCCeEEEEEe------CCCeEEEEeccccCcceeeEeeceee--
Q 012064 84 RVILWDWKTERVKLSFHSGHND---NVFQ-AKIMPFTDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQG-- 151 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~---~v~~-~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~-- 151 (471)
.+.-+|..+|+.+.+....... .+.+ ... . ++. ++.++ .+|.|+.+|..+++.+-.........
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~--~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~ 207 (599)
T 1w6s_A 132 NVAALNAETGETVWKVENSDIKVGSTLTIAPYV-V--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL 207 (599)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E--TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEEEEECCCCCEEEeecCCCCCccceeecCCEE-E--CCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence 9999999999998776322110 1221 112 1 444 44444 37899999998887654322211100
Q ss_pred ---------------------------------eE-EEEEEccCCCcEEEEEecC----------------CeEEEEecc
Q 012064 152 ---------------------------------RA-HKLAIEPGSPHVFYTCGED----------------GLVQHFDLR 181 (471)
Q Consensus 152 ---------------------------------~v-~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~ 181 (471)
.+ ...++.+... +++.+..+ +.|..+|.+
T Consensus 208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~ 286 (599)
T 1w6s_A 208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD 286 (599)
T ss_dssp TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence 00 1345556663 55665544 489999999
Q ss_pred CCccceeeeecccCCcCcceeeeeeEEEEEc-CCCC---ceEEEEeCCCeEEEEEcCCCccCCCC
Q 012064 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA---NLFAVAGSDEYTRLYDIRKYKWDGST 242 (471)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (471)
+++....++..............++. +... .+ + ..++.++.+|.++++|.++++.+...
T Consensus 287 TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD-GKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT-SCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCceeeEeecCCCccccccCCCccEE-EeccccC-CcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 99998877654321100000011111 2222 34 4 46777889999999999998865443
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.97 E-value=6.4e-07 Score=79.63 Aligned_cols=103 Identities=9% Similarity=0.111 Sum_probs=62.3
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCC-------------------CcceeEEEEecCCCCeEEE
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGH-------------------NDNVFQAKIMPFTDDRSIV 122 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~~l~ 122 (471)
....+++|+++|+++.++..++.|..||..+++. ..+.... ......+++.+ ++..|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcC--CCCcEE
Confidence 3456788999998777888889999999876553 2221100 12467889986 455566
Q ss_pred EEeCCCeEEEEeccccCcceee-Eeec-eeeeEEEEEEcc-CCCcEEEE
Q 012064 123 TCAADGQVRHAQILERGGVETK-LLGK-HQGRAHKLAIEP-GSPHVFYT 168 (471)
Q Consensus 123 s~~~dg~i~iwd~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~~l~~ 168 (471)
.+...+.+..+|..++...... ...+ .......+++.+ ++ +++++
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~ 143 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFT 143 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEE
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEE
Confidence 6655556888886544321110 0111 112467788888 77 45444
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.1e-05 Score=81.10 Aligned_cols=294 Identities=10% Similarity=0.067 Sum_probs=173.0
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeec------CCCcceeEEEEecCCCCeEEEEEeCCCeEEEEe
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 134 (471)
...|.++...++|.+.+.. .+ -+.+||..+++...-... .....|.++...+ ++... .|...+-|.+++
T Consensus 210 ~~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lW-igt~~~Gl~~~~ 284 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK--DNKLW-IATELNGIMILD 284 (781)
T ss_dssp CSSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECT--TSEEE-EEESSSCEEEEE
T ss_pred CCceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC--CCCEE-EEeCCCCeEEEC
Confidence 3568999999888876643 44 488999876654221111 1235688888876 66644 455545678888
Q ss_pred ccccCcceeeE------------eeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCccee
Q 012064 135 ILERGGVETKL------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 135 ~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (471)
..+........ ..-....|.++...+++. +..|+.++-|..++..+..... +.............
T Consensus 285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLS 361 (781)
T ss_dssp TTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCS
T ss_pred CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCccee-eccCccccccCCCC
Confidence 76554321110 011235689999988883 6788888889999987654332 21100000000002
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (471)
...|.++...++ + .|..|+.++.|..||..+.+...-. .........|.++...++|.+.+....+
T Consensus 362 ~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~d~~g~lWigt~~~ 427 (781)
T 3v9f_A 362 NKVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAIYNK------------ENRELLSNSVLCSLKDSEGNLWFGTYLG 427 (781)
T ss_dssp SSCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTE
T ss_pred CcceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEEEcc------------CCCCCCCcceEEEEECCCCCEEEEeccC
Confidence 346889998887 3 3556776677999998765422110 0001224568999999888877755557
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEe
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSG 361 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g 361 (471)
.+..++..++.. ..+.. ......|.++.. +++|++.+ |
T Consensus 428 Gl~~~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~i~~-d~~g~lwi-g 466 (781)
T 3v9f_A 428 NISYYNTRLKKF---------------------------------------QIIELEKNELLDVRVFYE-DKNKKIWI-G 466 (781)
T ss_dssp EEEEECSSSCEE---------------------------------------EECCSTTTCCCCEEEEEE-CTTSEEEE-E
T ss_pred CEEEEcCCCCcE---------------------------------------EEeccCCCCCCeEEEEEE-CCCCCEEE-E
Confidence 899998765311 00100 001113778877 88887544 4
Q ss_pred eCCCeEEEEEccCCeeeEEecCC-----CcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 362 SDCGRIFIWKKKGGELIRVIEAD-----RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 362 ~~dg~v~iwd~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+. +-|..||..+++........ ...|.++...++|++.+... ++-+..|+..+++.
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-GGGVGIYTPDMQLV 527 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-SSCEEEECTTCCEE
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-CCCEEEEeCCCCeE
Confidence 44 56888998776544332222 35789999999988766543 34477788766543
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.93 E-value=1.3e-06 Score=73.46 Aligned_cols=222 Identities=6% Similarity=0.112 Sum_probs=137.4
Q ss_pred EEeccccccEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 55 AKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 55 ~~l~~h~~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
+.+.+-.+.+..++|+|++. ++++...++.|...|.. ++.+.++..+-......+++.+ ++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence 45666667899999999865 44557778899999987 8877777433335677888988 88877776677889999
Q ss_pred eccccCcce---eeEee----ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC---CccceeeeecccCCcCcceee
Q 012064 134 QILERGGVE---TKLLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 134 d~~~~~~~~---~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 203 (471)
++.....+. ...+. ..+.....++|+|.+..+ +++.+.....+|.++. ............ ......
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L-~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~---~~~~~~ 172 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF-WFFKEKNPIEVYKVNGLLSSNELHISKDKAL---QRQFTL 172 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE-EEEEESSSEEEEEEESTTCSSCCEEEECHHH---HHTCCS
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE-EEEECcCCceEEEEcccccCCceeeecchhh---cccccc
Confidence 886654311 11111 123446899999998655 4455544445555441 111111111000 000022
Q ss_pred eeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCc
Q 012064 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (471)
..+.+++++|..+++++....+..+..+|.... ......+.... .-....-.....++|.++|++.+++-.+-
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~------~~l~~~~~qpEGia~d~~G~lyIvsE~n~ 245 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGS------RGLSHNIKQAEGVAMDASGNIYIVSEPNR 245 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTG------GGCSSCCCSEEEEEECTTCCEEEEETTTE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc------CCcccccCCCCeeEECCCCCEEEEcCCce
Confidence 357899999998888888888999999997654 33322221100 00001123568899999998777655556
Q ss_pred EEEEecC
Q 012064 284 IYLFTQD 290 (471)
Q Consensus 284 i~i~d~~ 290 (471)
++.|...
T Consensus 246 ~y~f~~~ 252 (255)
T 3qqz_A 246 FYRFTPQ 252 (255)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 7777543
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.92 E-value=8.6e-07 Score=85.09 Aligned_cols=169 Identities=11% Similarity=0.062 Sum_probs=95.2
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCc---cee-EEEEec-CCCCe-EEEEEe------CCCeEEEEeccccCc
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVF-QAKIMP-FTDDR-SIVTCA------ADGQVRHAQILERGG 140 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~-~~~~~~-~~~~~-~l~s~~------~dg~i~iwd~~~~~~ 140 (471)
+..++.++.|+.|.-+|..+|+.+.+....... .+. ...... ..+++ .+++++ .+|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 456777888999999999999998776322110 111 111221 00122 555554 378899999988776
Q ss_pred ceeeEeec-ee--------------------------------------eeEEEEEEccCCCcEEEEEec----------
Q 012064 141 VETKLLGK-HQ--------------------------------------GRAHKLAIEPGSPHVFYTCGE---------- 171 (471)
Q Consensus 141 ~~~~~~~~-~~--------------------------------------~~v~~~~~~~~~~~~l~~~~~---------- 171 (471)
+-...... +. ..-..+++.|+.. +++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCccc
Confidence 54321100 00 0001245566653 4555442
Q ss_pred ----------C----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc-CCCC--ceEEEEeCCCeEEEEEcC
Q 012064 172 ----------D----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA--NLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 172 ----------d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~i~i~d~~ 234 (471)
| +.|..+|.++++....++..............++ -+... .++. ..++.++.+|.++++|.+
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 6899999999999887765321110000001111 12221 3422 378889999999999999
Q ss_pred CCccCCCCC
Q 012064 235 KYKWDGSTD 243 (471)
Q Consensus 235 ~~~~~~~~~ 243 (471)
+++......
T Consensus 355 tG~~lw~~~ 363 (582)
T 1flg_A 355 NGKLQNAFP 363 (582)
T ss_dssp TCCEEEEEE
T ss_pred CCCEecccc
Confidence 988664433
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.90 E-value=2.8e-07 Score=76.18 Aligned_cols=191 Identities=12% Similarity=0.063 Sum_probs=122.1
Q ss_pred CCCCCcEEEEecCC--CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCCC
Q 012064 6 NNNNNKRARTSVDK--ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (471)
Q Consensus 6 ~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~ 83 (471)
|++ +.+..+.+.+ +.|+.+|+++|+.+.+ ..+..+.-. -.+++. .++.....-.++
T Consensus 28 ~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-------------------~~l~~~~fg-eGi~~~-~~~ly~ltw~~~ 85 (243)
T 3mbr_X 28 YLR-GHLYESTGETGRSSVRKVDLETGRILQR-------------------AEVPPPYFG-AGIVAW-RDRLIQLTWRNH 85 (243)
T ss_dssp EET-TEEEEEECCTTSCEEEEEETTTCCEEEE-------------------EECCTTCCE-EEEEEE-TTEEEEEESSSS
T ss_pred EEC-CEEEEECCCCCCceEEEEECCCCCEEEE-------------------EeCCCCcce-eEEEEe-CCEEEEEEeeCC
Confidence 444 4555666655 4999999999998731 111111111 123332 233444455688
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeecee---eeEEEEEEcc
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEP 160 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~ 160 (471)
.+.+||.++.+.+.++..+. .-..++ + +++.|+.+..++.|.++|..+.+.........+. ..++.+.+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~--~Gwglt--~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG--EGWALT--S--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS--CCCEEE--E--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEEECCcCcEEEEEeCCC--CceEEe--e--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 99999999999998885332 224444 4 7777777777899999999888776654443322 234556665
Q ss_pred CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCc---ceeeeeeEEEEEcCCCCceEEEEeCCC
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN---YMTVVNLNAIAIDPRNANLFAVAGSDE 226 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (471)
++ .+++..-.+..|.+.|.++++....+.......... .....-.+.++++|++..++++|-.=.
T Consensus 159 ~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 159 NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 55 566555567899999999999998887654432211 112235789999998666666665433
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.89 E-value=2.5e-06 Score=70.52 Aligned_cols=213 Identities=13% Similarity=0.037 Sum_probs=133.7
Q ss_pred eeeeeEEecccc--ccEEEEEEcCCCCEEEEecCC--CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe
Q 012064 50 RLGIYAKLDKHR--GCVNTVSFNTDGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 50 ~~~~~~~l~~h~--~~V~~~~~s~~g~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
..++++++ .|. .....+.|++ +.++.+.+.+ ..|+.+|+++++.+.++.-....--..++.. +++..+..-
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~---~~~ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW---RDRLIQLTW 82 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEES
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe---CCEEEEEEe
Confidence 34566666 454 5577899986 6666666665 4899999999999887732222111233443 344555555
Q ss_pred CCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 126 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.++.+.++|..+.+.+.+....++ -..+ .+++..++++ ..++.|.++|.++.+....+....... ....
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~---Gwgl--t~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~-----~~~~ 151 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGE---GWAL--TSDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGR-----PLDN 151 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSC---CCEE--EECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTE-----ECCC
T ss_pred eCCEEEEEECCcCcEEEEEeCCCC---ceEE--eeCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCc-----cccc
Confidence 688999999988877766433321 2333 3566555454 458899999999998887776532110 1123
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (471)
++.+.+. + +.+++..-.+..|.+.|.++++......+........ ........-.+.++++|+++.|...+..
T Consensus 152 lNeLe~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 152 LNELEWV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEEE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeEEe-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 5566665 3 5666666577899999999998776655432211100 0001123457899999988776666644
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.88 E-value=1.6e-05 Score=69.89 Aligned_cols=124 Identities=8% Similarity=0.007 Sum_probs=74.7
Q ss_pred eeeEEeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC--e
Q 012064 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--Q 129 (471)
Q Consensus 52 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~ 129 (471)
+....+..+ .....++|+++|+++++...++.|..||... +....+ ........+++.+ +++.+++..... .
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~--~~~~~p~gia~~~--dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA--TVEGKVSGLAFTS--NGDLVATGWNADSIP 96 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE--ECSSEEEEEEECT--TSCEEEEEECTTSCE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE--eCCCCceeEEEcC--CCcEEEEeccCCcce
Confidence 344555433 4567899999999888777889999999764 433333 2235688999999 888666554332 3
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 183 (471)
|..++..+++........ .......++..+++ .++++-..++.|+.+|..++
T Consensus 97 v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEEECTTSCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred EEEEcCCCCeEEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCC
Confidence 555665555432211111 11223444555544 44454445788888887654
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.87 E-value=9.3e-07 Score=73.73 Aligned_cols=208 Identities=10% Similarity=0.025 Sum_probs=131.6
Q ss_pred eeeeEEecccc--ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeE--EEEecCCCCeEEEEEeC
Q 012064 51 LGIYAKLDKHR--GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ--AKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 51 ~~~~~~l~~h~--~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~s~~~ 126 (471)
.++++++ .|. .....+.|+ ++.++.+.+.+|.|+++|+++++.+.++ ... .... +++. +++..+..-.
T Consensus 43 ~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~---g~~Ly~ltw~ 114 (268)
T 3nok_A 43 AHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG--NIFAEGLASD---GERLYQLTWT 114 (268)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT--TCCEEEEEEC---SSCEEEEESS
T ss_pred eEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC--CcceeEEEEe---CCEEEEEEcc
Confidence 3556666 344 445788887 4677778888899999999999988776 332 3333 4443 2344444556
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
++.+.++|..+.+.+.+...... -..++ +++.. |+.+..++.|.++|.++.+....+....... ....+
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-----~v~~l 183 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRYSGE---GWGLC--YWNGK-LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-----PVELI 183 (268)
T ss_dssp SCEEEEEETTTTEEEEEEECSSC---CCCEE--EETTE-EEEECSSSEEEEECTTTCCEEEEEECEETTE-----ECCCE
T ss_pred CCEEEEEECCcCcEEEEEeCCCc---eeEEe--cCCCE-EEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-----ccccc
Confidence 88999999988887766433222 13333 56654 4555568899999999998887776532110 11245
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (471)
+.+.|. + +.+.+....+..|.+.|.++++....+.+........ ........-.+.|+++|+++.|...+.
T Consensus 184 NeLe~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~--~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 184 NELECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA--GQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT--TTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cccEEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc--ccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 667776 4 5666666678899999999998776655421100000 001112345689999998766555553
No 260
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=3e-07 Score=90.09 Aligned_cols=327 Identities=11% Similarity=0.086 Sum_probs=171.4
Q ss_pred CCEEEEecCCCeEEEEECCCCceEEEeecCCCcc---------e-eEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce
Q 012064 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDN---------V-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (471)
Q Consensus 73 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 142 (471)
+..++.++.++.|.-+|..+|+.+.++....... + ..+.+ .+..++.++.|+.+..+|..+++.+-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 4566667778999999999999988873221110 0 11223 34567778889999999999888765
Q ss_pred eeEeecee--eeEEE-EEEccCCCcEEEEEec------CCeEEEEeccCCccceeeeecccCCcCc------------c-
Q 012064 143 TKLLGKHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRN------------Y- 200 (471)
Q Consensus 143 ~~~~~~~~--~~v~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~- 200 (471)
........ ..+.+ ..+ .++ . ++++.. +|.|..+|.++++.+..+.......... .
T Consensus 142 ~~~~~~~~~~~~~~~~P~v-~~~-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRV-VKG-K-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEECSCTTSSCBCCSCCEE-ETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeccCCCCCcceecCCCEE-ECC-E-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 43221100 01110 011 133 3 444433 5899999999999988776421110000 0
Q ss_pred --------eeeeeeEEEEEcCCCCceEEEEeCCC-------------------eEEEEEcCCCccCCCCCCCCCCCcCCC
Q 012064 201 --------MTVVNLNAIAIDPRNANLFAVAGSDE-------------------YTRLYDIRKYKWDGSTDFGQPADYFCP 253 (471)
Q Consensus 201 --------~~~~~v~~~~~~p~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (471)
........++++|+ ..+++.++.++ .|..+|.++++........... ..
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~-~w-- 294 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD-SW-- 294 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC-CS--
T ss_pred ccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc-cc--
Confidence 01111235788887 45777777665 3899999988765433221000 00
Q ss_pred CcccCCCccceEEEEEcCCCC---eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCC-CCCCccCCCCCCcc
Q 012064 254 PNLIGDEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS-DHTSAASPSTANTD 328 (471)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~---~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 328 (471)
. . ....+.....+..+|+ .++.++ ++.++++|..+++.+...+..+.... . .+.. .+..+...... .
T Consensus 295 -d-~-~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~-~--~~d~~~g~p~~~~~~~-~- 366 (668)
T 1kv9_A 295 -D-F-TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA-E--KVDLATGRPVEAPGVR-Y- 366 (668)
T ss_dssp -C-C-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE-E--EECTTTCCEEECTTTT-C-
T ss_pred -c-c-cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc-c--ccccccCCcccccccc-c-
Confidence 0 0 0011222222333564 455655 67899999998876533222111000 0 0000 00000000000 0
Q ss_pred cccCCeeeecCCceeEeeeeeeeCCCCcEEEE------------------------------------eeCCCeEEEEEc
Q 012064 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS------------------------------------GSDCGRIFIWKK 372 (471)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~------------------------------------g~~dg~v~iwd~ 372 (471)
.......+.+......-..+++ +|+...++. ...+|.|+-||+
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~ 445 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSF-NPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP 445 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEE-ETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET
T ss_pred cCCeeEECCCCccccCCCcceE-CCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC
Confidence 0000000000000000112333 444443332 123488999999
Q ss_pred cCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 373 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
.+|+.+-....+. +.....+...+.+++.++.|+.++.||.++++..
T Consensus 446 ~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 446 VKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp TTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 9999887665432 2333344456788888999999999999988763
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.81 E-value=2.4e-05 Score=70.02 Aligned_cols=197 Identities=9% Similarity=0.033 Sum_probs=121.7
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccCc
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGG 140 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~ 140 (471)
+..+|.+..+++ +|+.+.. ..|+..++..... ..+... ......++|.+ .++.|+ +-...+.|..+++.....
T Consensus 34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~-~~~~~~-~~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEY-TLLLNN-LENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCE-EEEECS-CSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCc-eeEeecc-cceEEEeCCCCee-EEeecC-CCceEEEEEec--cccEEEEEeccCCceEEEecCCCCc
Confidence 344566666644 4444433 4588888765554 333233 34578999997 555555 444568898888865543
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (471)
... ..........+++.+.+.+++++-...+.|.+.++.......... . .......++++|.++.+++
T Consensus 108 ~~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 108 EEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp EEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-T---------TCSCEEEEEEETTTTEEEE
T ss_pred eEE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-C---------CCCCcceEEEecCcCeEEE
Confidence 221 222223457889988665677777777899999987654322221 1 1124688999997666666
Q ss_pred EEeCC-CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCC
Q 012064 221 VAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (471)
Q Consensus 221 ~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~ 291 (471)
+-... +.|..+++...... .+....-.....++++|++..|..+. .+.|..+++..
T Consensus 176 td~~~~~~I~r~~~dG~~~~---------------~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGRR---------------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EECSSSCEEEEEETTSCSCE---------------ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eccCCCCEEEEEeCCCCCcE---------------EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 65555 78888887653211 11111233468999999877766665 44799998764
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.79 E-value=2.8e-05 Score=68.65 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=138.5
Q ss_pred EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEecccc---CcceeeEeecee
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILER---GGVETKLLGKHQ 150 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 150 (471)
+|+.+.. ..|+..|+...+....+ ........++|.+ +++.|+ +-...+.|..+++... .... ..+....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~-~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CE-EEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEehh--cCCCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccE-EEEeCCC
Confidence 4444444 45889999877654433 2345678999998 655555 4455688999988652 1211 1122222
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC-CeEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTR 229 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~ 229 (471)
.....+++.+.+.+++++-...+.|.++|+........... .......++++|.++.++++.... +.|.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----------~~~~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC----------TTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC----------CCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence 34578899876656667767788999999875443322221 112468899999756555554443 7888
Q ss_pred EEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccc
Q 012064 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS 307 (471)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~ 307 (471)
.+++..... ..+....-.....++++|++..|..+. .+.|..+|++...
T Consensus 147 ~~~~dG~~~---------------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-------------- 197 (316)
T 1ijq_A 147 KGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-------------- 197 (316)
T ss_dssp EEETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------
T ss_pred EEcCCCCCe---------------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc--------------
Confidence 888754321 011111234568999999887776665 4479999986421
Q ss_pred cccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
...+ ...........+++ . .+.++++-...+.|..++..+++.+..+.
T Consensus 198 -------------------------~~~~~~~~~~~~~P~giav-~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 198 -------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp -------------------------CEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -------------------------eEEEeecCCccCCcEEEEE-E-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 1111 11000001456666 4 35555555667889999987777665554
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.76 E-value=3.4e-06 Score=74.24 Aligned_cols=224 Identities=12% Similarity=0.093 Sum_probs=128.7
Q ss_pred CCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC-
Q 012064 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD- 82 (471)
Q Consensus 4 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d- 82 (471)
++++++++++++-..++.|..||.+. +.. ..+. -.+....++++++|+++++....
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g-~~~---------------------~~~~-~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDG-NQQ---------------------IHAT-VEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTC-CEE---------------------EEEE-CSSEEEEEEECTTSCEEEEEECTT
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCC-ceE---------------------EEEe-CCCCceeEEEcCCCcEEEEeccCC
Confidence 45667888777777788898888773 322 1111 12457899999999976655332
Q ss_pred -CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceee--------EeeceeeeE
Q 012064 83 -RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK--------LLGKHQGRA 153 (471)
Q Consensus 83 -~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~v 153 (471)
..|..+|..+++...............++..+ ++..+++-..++.|..+|...+...... .....-...
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 25777787777753322112222234445444 5555555556788888886543111000 000111223
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccC-Cccc--eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
..+ +|++..++++-...+.|..+|+.. ++.. ..+. .......++++++ ++++++....+.|.+
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-----------~~~~P~gi~vd~d-G~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-----------EQTNIDDFAFDVE-GNLYGATHIYNSVVR 237 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-----------ESCCCSSEEEBTT-CCEEEECBTTCCEEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-----------ccCCCCCeEECCC-CCEEEEeCCCCeEEE
Confidence 445 778766667777788999999875 3221 1111 1123567899998 567666666788999
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc---CCCCeEEEee
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---DQSELLVSYN 280 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~ 280 (471)
+|.. ++.... .. ....-....+++|. |+++.|+..+
T Consensus 238 ~~~~-G~~~~~------------~~-~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 238 IAPD-RSTTII------------AQ-AEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECTT-CCEEEE------------EC-GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred ECCC-CCEEEE------------ee-cccccCCceEEEEecccCCCCEEEEEC
Confidence 9875 321100 00 01112457899998 8877666554
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.75 E-value=1e-06 Score=87.72 Aligned_cols=193 Identities=11% Similarity=0.048 Sum_probs=112.6
Q ss_pred CCCC-CCCcEEEEecC-C----CeEEEEEcccC-ccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEE
Q 012064 4 ASNN-NNNKRARTSVD-K----ALVDVWLRELG-QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL 76 (471)
Q Consensus 4 ~~~~-~~~~~l~~~~~-d----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l 76 (471)
..+| |||++||-+.+ + .+|+++|+++| +.+. ..+. .....++|+|||+.|
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------~~~~---~~~~~~~WspDg~~l 235 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------DKVS---GTNGEIVWGPDHTSL 235 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------CCEE---EECSCCEECSSTTEE
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------cccc---CceeeEEEecCCCEE
Confidence 4578 99998885433 2 36999999988 6431 0111 113468899999888
Q ss_pred EEecCC-----CeEEEEECCCCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeC---CCeEEEEeccccCcce--ee
Q 012064 77 ISGSDD-----RRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVE--TK 144 (471)
Q Consensus 77 ~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~--~~ 144 (471)
+....+ ..|.++++.+++. ...+..........+.|+| |+++|+..+. ...|.++|+.++.... ..
T Consensus 236 ~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 313 (751)
T 2xe4_A 236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI 313 (751)
T ss_dssp EEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred EEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence 877654 3688889877642 2222122334456789999 9998886653 3468888887653222 22
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecC----CeEEEEeccCC-ccce-eeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTG-AATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
...........+.|+. +..+++....+ ..|..+|+.++ +... .+.. . ....+..+.+. ++.+
T Consensus 314 l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~--------~~~~l~~~~~~--~~~l 381 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-S--------EDVFMESIAVR--SNYL 381 (751)
T ss_dssp SSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-C--------SSEEEEEEEEC--SSEE
T ss_pred eecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-C--------CCcEEEEEEEE--CCEE
Confidence 2333344455555554 43565665544 36777777653 2122 1211 0 11234555554 3567
Q ss_pred EEEEeCCCeEE--EEEc
Q 012064 219 FAVAGSDEYTR--LYDI 233 (471)
Q Consensus 219 l~~~~~dg~i~--i~d~ 233 (471)
+++...++..+ ++++
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 77777888655 4554
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.75 E-value=1.4e-05 Score=72.81 Aligned_cols=254 Identities=10% Similarity=0.026 Sum_probs=148.0
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccCccee
Q 012064 65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 65 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~ 143 (471)
.|.+..+++ +|+.+.. ..|+..++......... . .......++|.+ .++.|+ +-...+.|..+++.......
T Consensus 80 ~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~- 152 (386)
T 3v65_B 80 SCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLL-N-NLENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEE- 152 (386)
T ss_dssp CEEECSSCC-EEEEECB-SCEEEECTTSCCCEEEE-C-SCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEE-
T ss_pred eECCccccc-eeEeecC-ccceeeccCCCcEEEEe-c-CCCccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEE-
Confidence 455555533 4444433 46888888765543332 3 334578999997 555554 44556788888886544222
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
...........+++.+.+.+++++-...+.|.+.++........+. . .......++++|.++.++++-.
T Consensus 153 -~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~---------~l~~P~giavdp~~g~ly~td~ 221 (386)
T 3v65_B 153 -VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYWTDW 221 (386)
T ss_dssp -EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-S---------SCSCEEEEEEETTTTEEEEEEC
T ss_pred -EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-C---------CCCCCcEEEEEcCCCeEEEecc
Confidence 1222223456788888665677777777889999887554322221 1 1124688999998666666555
Q ss_pred CC-CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCC
Q 012064 224 SD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPS 300 (471)
Q Consensus 224 ~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~ 300 (471)
.. +.|..+++..... ..+....-.....++++|++..|..+. .+.|..+++.....
T Consensus 222 ~~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------ 280 (386)
T 3v65_B 222 GNTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------ 280 (386)
T ss_dssp SSSCEEEEEETTSCSC---------------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC------
T ss_pred CCCCEEEEEeCCCCCc---------------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee------
Confidence 55 7888888765321 111112233468899998777666655 44788888764210
Q ss_pred CCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEE
Q 012064 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (471)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~ 380 (471)
...+..... ....+++ . .+..+++-...+.|..++..+|+.+..
T Consensus 281 --------------------------------~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~~~ 324 (386)
T 3v65_B 281 --------------------------------KAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQEI 324 (386)
T ss_dssp --------------------------------EEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred --------------------------------EEEEECCCC--CceEEEE-E-CCEEEEeeCCCCeEEEEECCCCcceEE
Confidence 011111111 1455665 3 344555556678899998767776666
Q ss_pred ecCCCcceEEEEE
Q 012064 381 IEADRHVVNCIEP 393 (471)
Q Consensus 381 ~~~h~~~v~~~~~ 393 (471)
+.........+++
T Consensus 325 i~~~~~~p~gi~v 337 (386)
T 3v65_B 325 IRNKLHFPMDIHT 337 (386)
T ss_dssp EECSCSCCCCEEE
T ss_pred EccCCCCCceEEE
Confidence 6543333444444
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=8.6e-07 Score=85.00 Aligned_cols=331 Identities=12% Similarity=0.063 Sum_probs=165.3
Q ss_pred CCEEEEecC-CCeEEEEEC-CCCceEEEeecCCCcce----------eEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHNDNV----------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 73 g~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
+..++.++. ++.|.-+|. .+|+.+.++.......+ ..+.. ++..++.++.|+.+..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence 445555666 788999999 89999888732221111 11222 355777788899999999988887
Q ss_pred ceeeEeeceee--eEEE-EEEccCCCcEEEEEec------CCeEEEEeccCCccceeeeecccCCc----C---------
Q 012064 141 VETKLLGKHQG--RAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDR----R--------- 198 (471)
Q Consensus 141 ~~~~~~~~~~~--~v~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~----~--------- 198 (471)
.-......+.. .+.+ ..+ .++ . +++++. ++.|..+|.++++.+..+........ +
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v-~~g-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFV-AKD-T-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-E-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEecCCCCCccceeccCCEE-ECC-E-EEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 65433332110 1111 111 134 3 455544 79999999999998877664321100 0
Q ss_pred -------------cc--eeeeeeEEEEEcCCCCceEEEEeCC----------------CeEEEEEcCCCccCCCCCCCCC
Q 012064 199 -------------NY--MTVVNLNAIAIDPRNANLFAVAGSD----------------EYTRLYDIRKYKWDGSTDFGQP 247 (471)
Q Consensus 199 -------------~~--~~~~~v~~~~~~p~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~ 247 (471)
.. ........++++++. ..++.+..+ +.|..+|.++++..........
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence 00 000001235667763 455555432 3588999988875433222100
Q ss_pred CCcCCCCcccCCCccceEEEEEcCCCC---eEEEee-CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 248 ADYFCPPNLIGDEQVGITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
. .. -......++. +...++|+ .++.++ ++.++++|..+++.....+..+.......... ..+..+....
T Consensus 294 d-~~----d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~-~~g~p~~~~~ 366 (571)
T 2ad6_A 294 D-EW----DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL-KTGTPVRDPE 366 (571)
T ss_dssp C-SS----CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT-TTCSEEECGG
T ss_pred c-cc----ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc-cCCceecccc
Confidence 0 00 0000112221 22234674 455555 66899999988865433221110000000000 0000000000
Q ss_pred CCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEee-------------------------------------CCCe
Q 012064 324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------------------------------------DCGR 366 (471)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~-------------------------------------~dg~ 366 (471)
..............+......-..+++ +|+..+++... .+|.
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~ 445 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSY-DPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQ 445 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEE-ETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceE-CCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCe
Confidence 000000000000000000000123444 66655554432 3578
Q ss_pred EEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 367 v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
|+.||+.+++.+.++.... .+........+..++.++.||.|+.||.++++..
T Consensus 446 l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 446 IRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 9999999998887665322 2222223334567777899999999999988764
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=1e-05 Score=68.03 Aligned_cols=216 Identities=13% Similarity=0.130 Sum_probs=129.9
Q ss_pred EeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
.+.+-...+..++++|++..++++...++.|...|+. ++....+... .......+++.++ +.++++.-.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------g~~D~EGIa~~~~-g~~~vs~E~ 89 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------FVKDLETIEYIGD-NQFVISDER 89 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------SCSSEEEEEECST-TEEEEEETT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------CCCChHHeEEeCC-CEEEEEECC
Confidence 3555667899999999876777778888999999998 7766666432 1235678888887 556666557
Q ss_pred CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCCCCCCCCCCc
Q 012064 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV 303 (471)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~ 303 (471)
++.+.++++......... ............+.....++|+|.++.|.++. .+...+|... +.....
T Consensus 90 ~~~l~~~~v~~~~~i~~~------~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~~~~~------ 156 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKIL------KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GLLSSN------ 156 (255)
T ss_dssp TTEEEEEEECTTCCEEEE------EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-STTCSS------
T ss_pred CCcEEEEEcCCCCeeeee------eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-ccccCC------
Confidence 788999988654311000 00000000112355689999999987666665 3344455443 110000
Q ss_pred cccccccccCCCCCCccCCCCCCcccccCCeee-----ecCCceeEeeeeeeeCC-CCcEEEEeeCCCeEEEEEccCCee
Q 012064 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGEL 377 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~s~-~g~~l~~g~~dg~v~iwd~~~~~~ 377 (471)
..... .+......+.++++ +| .+++++...+...+.++|.. |+.
T Consensus 157 ----------------------------~l~i~~~~~~~~~~~~~d~S~l~~-dp~tg~lliLS~~s~~L~~~d~~-g~~ 206 (255)
T 3qqz_A 157 ----------------------------ELHISKDKALQRQFTLDDVSGAEF-NQQKNTLLVLSHESRALQEVTLV-GEV 206 (255)
T ss_dssp ----------------------------CCEEEECHHHHHTCCSSCCCEEEE-ETTTTEEEEEETTTTEEEEECTT-CCE
T ss_pred ----------------------------ceeeecchhhccccccCCceeEEE-cCCCCeEEEEECCCCeEEEEcCC-CCE
Confidence 00000 00000011567777 55 45566677777889999974 556
Q ss_pred eEEecCCC---------cceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 378 IRVIEADR---------HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 378 ~~~~~~h~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
+..+.-.. .....|+|.++|++.++ ++.+.++.+...
T Consensus 207 ~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 207 IGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred EEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 65543221 25789999999985555 677777776543
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.69 E-value=0.00012 Score=66.80 Aligned_cols=248 Identities=11% Similarity=0.024 Sum_probs=145.8
Q ss_pred EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEE-eCCCeEEEEeccccC--cceeeEeeceee
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERG--GVETKLLGKHQG 151 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~ 151 (471)
+|+.+.. ..|+..++......... .....+..++|.+ .++.|+.+ ...+.|+.+++.... ............
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEE--CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEecc-ceeEEEccCCcceeEec--cccCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 4554443 67999998866553333 3456788999998 65555554 456788888876532 111122332345
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC-CCeEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i 230 (471)
....+++.+.+.+++++-...+.|.+.+++.......+.. .......++++|.++.++.+-.. .+.|..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----------~~~~P~~iavdp~~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----------SSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----------CCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence 6788999986557777777788999999886654333321 11246899999975555554423 467888
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCcccccc
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 308 (471)
.++..... ..+....-.....+++++++..|..+. .+.|..+|++...
T Consensus 230 ~~~dG~~~---------------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~--------------- 279 (400)
T 3p5b_L 230 GGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--------------- 279 (400)
T ss_dssp EETTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---------------
T ss_pred EeCCCCcc---------------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc---------------
Confidence 88765321 111112234578899999887777665 4479999876421
Q ss_pred ccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcc
Q 012064 309 ASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV 387 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 387 (471)
...+ ...........++. . .+.++.+-...+.|+.+|..+|+.+..+......
T Consensus 280 ------------------------~~~~~~~~~~l~~P~gl~v-~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~ 333 (400)
T 3p5b_L 280 ------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 333 (400)
T ss_dssp ------------------------CEEEEECSSTTSSEEEEEE-E-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSC
T ss_pred ------------------------cEEEEeCCCCCCCCEEEEE-e-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCC
Confidence 1111 11100001345554 2 3344455556688999997788777666544334
Q ss_pred eEEEEE
Q 012064 388 VNCIEP 393 (471)
Q Consensus 388 v~~~~~ 393 (471)
...+..
T Consensus 334 p~~i~v 339 (400)
T 3p5b_L 334 PEDMVL 339 (400)
T ss_dssp EEEEEE
T ss_pred CceEEE
Confidence 444443
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.68 E-value=4e-05 Score=68.64 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=132.2
Q ss_pred CeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeE
Q 012064 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
..|+..++....... +......+..++|++.+..++++-...+.|..+++........... ......
T Consensus 53 ~~I~~i~~~g~~~~~---~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~ 119 (349)
T 3v64_C 53 IDIRQVLPHRSEYTL---LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPG 119 (349)
T ss_dssp SCEEEECTTSCCEEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCC
T ss_pred cceEEEeCCCCeeEE---eecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----------CCCCcc
Confidence 457777765443221 2223345789999987756766766788999999887653332211 112356
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--C-CcE
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D-EFI 284 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~-~~i 284 (471)
.+++++.+++++++-...+.|.+.++..... ..+..........++++|.+..|.... . +.|
T Consensus 120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEecCCCeEEEEcCCCCeEEEEcCCCCce---------------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 8899887566767767778999999875421 111112234468899999766665554 3 468
Q ss_pred EEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEe-eC
Q 012064 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SD 363 (471)
Q Consensus 285 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g-~~ 363 (471)
+.++++... ...+.. ........+++ +|++..|+.+ ..
T Consensus 185 ~r~~~dG~~---------------------------------------~~~~~~-~~~~~PnGla~-d~~~~~lY~aD~~ 223 (349)
T 3v64_C 185 EASSMDGSG---------------------------------------RRIIAD-THLFWPNGLTI-DYAGRRMYWVDAK 223 (349)
T ss_dssp EEEETTSCS---------------------------------------CEESCC-SSCSCEEEEEE-ETTTTEEEEEETT
T ss_pred EEEeCCCCC---------------------------------------cEEEEE-CCCCCcceEEE-eCCCCEEEEEECC
Confidence 877765421 111100 01112578888 8876666655 44
Q ss_pred CCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 364 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
.+.|..+|+........+.........+++. .+.++++-...+.|...+..+++
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCC
Confidence 6789999986443333333334456778873 44555555567788888754443
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.68 E-value=1.4e-05 Score=72.68 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=136.8
Q ss_pred EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCc
Q 012064 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (471)
Q Consensus 120 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (471)
+|+.+. ...|+.+++....... +......+..++|++.+..++++-...+.|+.+++........+..
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~---~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-------- 156 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTL---LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-------- 156 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS--------
T ss_pred eeEeec-CccceeeccCCCcEEE---EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC--------
Confidence 343333 3568888876554322 2223345789999987657777767788999999887653332211
Q ss_pred ceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEe
Q 012064 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (471)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (471)
.......+++++.++.++++-...+.|.+.++..... ..+..........++++|.+..|...
T Consensus 157 --~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---------------~~l~~~~l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 157 --GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------------KVLLWQSLEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp --SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred --CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---------------EEeecCCCCCCcEEEEEcCCCeEEEe
Confidence 1113467888887566666666778888888764321 11122223456889999977766655
Q ss_pred e--C-CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee-cCCceeEeeeeeeeCCCC
Q 012064 280 N--D-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKC 355 (471)
Q Consensus 280 ~--~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~g 355 (471)
. . +.|+.++++.. ....+. .... ....+++ +|++
T Consensus 220 d~~~~~~I~r~~~dG~---------------------------------------~~~~~~~~~~~--~PnGlav-d~~~ 257 (386)
T 3v65_B 220 DWGNTPRIEASSMDGS---------------------------------------GRRIIADTHLF--WPNGLTI-DYAG 257 (386)
T ss_dssp ECSSSCEEEEEETTSC---------------------------------------SCEEEECSSCS--CEEEEEE-EGGG
T ss_pred ccCCCCEEEEEeCCCC---------------------------------------CcEEEEECCCC--CeeeEEE-eCCC
Confidence 4 2 46777776542 111111 1111 2578888 8776
Q ss_pred cEEEEe-eCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCC
Q 012064 356 EYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (471)
Q Consensus 356 ~~l~~g-~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 418 (471)
..|+.+ ...+.|+.+|+........+.........+++ ..+.++++-...+.|..++..+++
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 258 RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 666655 44678999998644333333333445678888 344566666667888888854443
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=3.8e-06 Score=80.50 Aligned_cols=213 Identities=11% Similarity=0.011 Sum_probs=117.5
Q ss_pred CCEEEEecC-CCeEEEEEC-CCCceEEEeecCCCcc----------eeEEEEecCCCCeE----EEEEeCCCeEEEEecc
Q 012064 73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHNDN----------VFQAKIMPFTDDRS----IVTCAADGQVRHAQIL 136 (471)
Q Consensus 73 g~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~----l~s~~~dg~i~iwd~~ 136 (471)
+..++.++. ++.|.-+|. .+|+.+.++....... ...+++.| .+.. ++.++.|+.+..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence 445666666 788999999 8999988874322110 12345554 4444 7888889999999998
Q ss_pred ccCcceeeEeeceee--eEEE-EEEccCCCcEEEEEe------cCCeEEEEeccCCccceeeeecccCCc----------
Q 012064 137 ERGGVETKLLGKHQG--RAHK-LAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDR---------- 197 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~---------- 197 (471)
+++.+-......+.. .+.+ ..+ .++ . +++++ .++.|+.+|.++++.+..+........
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYV-VKD-K-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEE-ETT-E-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCEEEeecCCCCCccceeecCCEE-ECC-E-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 888765433322110 1111 111 134 3 45554 379999999999998877664321100
Q ss_pred ----------------Cccee-eeee-EEEEEcCCCCceEEEEeCC----------------CeEEEEEcCCCccCCCCC
Q 012064 198 ----------------RNYMT-VVNL-NAIAIDPRNANLFAVAGSD----------------EYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 198 ----------------~~~~~-~~~v-~~~~~~p~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~ 243 (471)
..+.. ...+ ..++++++ ..+++.+..+ +.|..+|.++++....+.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~-~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG-TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCC-CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 00000 0000 13556676 3566666654 378999999887543322
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEc-CCC---CeEEEee-CCcEEEEecCCCCCCCC
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFS-DQS---ELLVSYN-DEFIYLFTQDMGLGPNP 297 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~---~~l~~~~-~~~i~i~d~~~~~~~~~ 297 (471)
..... .. -......++. +... .+| +.++.++ ++.++++|..+++.+..
T Consensus 296 ~~~~d-~w----d~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 296 KTPHD-EW----DYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp SSTTC-SS----CCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCCCc-cc----cccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 21100 00 0000111222 2222 466 3455554 67899999988875543
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.68 E-value=1.1e-06 Score=86.32 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=75.4
Q ss_pred EEEEcC-CCCEEEEecCCC-----------eEEEEECCCCce--EEEeecCCCcceeEEEEecCCCCeEEEEEeC-CCeE
Q 012064 66 TVSFNT-DGDILISGSDDR-----------RVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQV 130 (471)
Q Consensus 66 ~~~~s~-~g~~l~s~~~d~-----------~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i 130 (471)
++++.| +|+.++.|+.+. .+.+||..+++- +......+.....++++.+ +++.++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCce
Confidence 456667 888888887542 688999887763 2223223333444567777 8999999884 4589
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEe-cC-----CeEEEEeccCCccc
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-ED-----GLVQHFDLRTGAAT 186 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~ 186 (471)
.+||..+........+.... .-.++++.+++ ++++.|+ .+ ..+.+||..+++..
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVAR-GYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCC-SSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEecCcCCceeECCCCCccc-cccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999877654332122111 11345566677 5788888 34 56899999887543
No 273
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.63 E-value=1.2e-05 Score=71.29 Aligned_cols=254 Identities=11% Similarity=0.005 Sum_probs=131.5
Q ss_pred CCCCCCCCcEEEEecCCCeEEEEEcccCccccccccceecc--cccceeeeeeeEEeccccccEEEEEEcC-CCCEEEEe
Q 012064 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRA--SEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISG 79 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~h~~~V~~~~~s~-~g~~l~s~ 79 (471)
++++.++++++.++..++.|..|+.++++...-........ ..+.... .........+..+++.+ +|++++ +
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~p~gi~~~~~~g~l~v-~ 97 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD----AEKRPLCGRTYDISYNLQNNQLYI-V 97 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCC----GGGHHHHCCEEEEEEETTTTEEEE-E
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccc----hhccccCCCCceEEEcCCCCcEEE-E
Confidence 45667788878888889999999988654331000000000 0000000 00001123578899998 665555 4
Q ss_pred cCCCeEEEEECCCCceEEEeec---C-CCcceeEEEEecCCCCeEEEEEeC-----------------CCeEEEEecccc
Q 012064 80 SDDRRVILWDWKTERVKLSFHS---G-HNDNVFQAKIMPFTDDRSIVTCAA-----------------DGQVRHAQILER 138 (471)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~ 138 (471)
...+.|..+|..+++. ..+.. + .......+++.|. +|+..++-.. ++.|..+|..++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 4445588888765542 22211 1 1123567777751 3444444322 366777776544
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc--eeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
+... +.........++++|++..++++-+..+.|..|++...... ..+.. . . . ...++++++ +
T Consensus 176 ~~~~---~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~-------~-g-P~gi~~d~~-G 240 (322)
T 2fp8_A 176 ETTL---LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--I-------P-N-PGNIKRNAD-G 240 (322)
T ss_dssp EEEE---EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--C-------S-S-EEEEEECTT-S
T ss_pred EEEE---eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--C-------C-C-CCCeEECCC-C
Confidence 3221 11122345679999998545555567789999998764221 11110 0 1 1 567899998 4
Q ss_pred ceEEEEeC----------CCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEE
Q 012064 217 NLFAVAGS----------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIY 285 (471)
Q Consensus 217 ~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~ 285 (471)
++.++... .+.|..+|.. ++....+... . ......+..+++ .+++++++.. .+.|.
T Consensus 241 ~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~--------~---g~~~~~~~~~~~-~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 241 HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP--------P---PFAGEHFEQIQE-HDGLLYIGTLFHGSVG 307 (322)
T ss_dssp CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--------T---TTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--------C---CCccccceEEEE-eCCEEEEeecCCCceE
Confidence 55554433 4567788764 3322111100 0 000123455555 3555555443 56899
Q ss_pred EEecCC
Q 012064 286 LFTQDM 291 (471)
Q Consensus 286 i~d~~~ 291 (471)
.+++..
T Consensus 308 ~~~~~~ 313 (322)
T 2fp8_A 308 ILVYDK 313 (322)
T ss_dssp EEEC--
T ss_pred EEeccc
Confidence 998764
No 274
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.61 E-value=0.00053 Score=66.25 Aligned_cols=159 Identities=7% Similarity=0.014 Sum_probs=97.3
Q ss_pred ccEEEEEEcCCCC-EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC--CCeEEEEecccc
Q 012064 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILER 138 (471)
Q Consensus 62 ~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~ 138 (471)
.....+++.+.+. +.++-...+.|.+.++..... ..+....-.....+++.| .+.+|+.... .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCC
Confidence 4678899998655 555556678999999875433 334334445677899998 6555555442 356666665433
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
.... .....-.....+++++++.+++++-...+.|..+|+........... .......+++.++ .+
T Consensus 161 ~~~~--l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~----------~~~~P~gi~~~~~--~l 226 (619)
T 3s94_A 161 SRFI--IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG----------SLPHPFALTLFED--IL 226 (619)
T ss_dssp SCEE--EECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESSS--EE
T ss_pred ceEE--EEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC----------CCCCceEEEEeCC--EE
Confidence 2221 12223345789999998767767767778899999876443322210 0112346677654 45
Q ss_pred EEEEeCCCeEEEEEcCCCc
Q 012064 219 FAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~ 237 (471)
+++-...+.|...|..+++
T Consensus 227 y~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEECTTTCSEEEEESSSCC
T ss_pred EEecCCCCEEEEEECCCCc
Confidence 5555567789999987765
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.60 E-value=5.1e-06 Score=81.55 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=69.5
Q ss_pred CCcEEEEecCCC-----------eEEEEEcccCccccccccceecccccceeeeeeeEEe-ccccccEEEEEEcCCCCEE
Q 012064 9 NNKRARTSVDKA-----------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDIL 76 (471)
Q Consensus 9 ~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~~g~~l 76 (471)
+++.++.|+.+. .+.+||..+++... + ..+ ..+.....++++.++|+++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~----------------~---~~~~~~~~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD----------------R---TVTVTKHDMFCPGISMDGNGQIV 257 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC----------------C---EEEECSCCCSSCEEEECTTSCEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe----------------C---cccCCCCCCccccccCCCCCCEE
Confidence 778888876543 68889988777552 1 111 1233334456778899999
Q ss_pred EEecC-CCeEEEEECCCCceEEEeecCCC-cceeEEEEecCCCCeEEEEEe-CC-----CeEEEEeccccC
Q 012064 77 ISGSD-DRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCA-AD-----GQVRHAQILERG 139 (471)
Q Consensus 77 ~s~~~-d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~ 139 (471)
+.|+. +..+.+||..+++-.. ....+. ..-.+++..+ +++.++.|+ .+ ..+.+||..++.
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIP-GPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEE-CCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EeCCCCCCceEEecCcCCceeE-CCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99985 4589999988765322 111111 1223455667 888888888 34 468889886654
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.58 E-value=9.2e-05 Score=65.18 Aligned_cols=237 Identities=15% Similarity=0.099 Sum_probs=137.9
Q ss_pred EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEE-EEEeCCCeEEEEeccccCcceeeEeeceeeeE
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 153 (471)
+|+.+. ...|+..++...................+.|.+ .++.| ++-...+.|..+++........ .........
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~-~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQN-VVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCE-EEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEE-EEcCCCCCc
Confidence 344443 357999998766311111112234567899998 54444 4545567898898866532221 122222346
Q ss_pred EEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe-CCCeEEEEE
Q 012064 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYD 232 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d 232 (471)
..+++.+.+.+++++-...+.|.++++.......... . .......++++|.++.++.+-. ..+.|..++
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-Q---------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-C---------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 7789987665677776777899999987654322221 1 1224688999997555554432 357888888
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCcccccccc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
+..... ..+....-.....++++|++..|..+. .+.|..++++...
T Consensus 152 ~dG~~~---------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~----------------- 199 (318)
T 3sov_A 152 MDGSSR---------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN----------------- 199 (318)
T ss_dssp TTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------
T ss_pred cCCCCe---------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-----------------
Confidence 764321 011111223468999999877776665 4579999876421
Q ss_pred ccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecC
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~ 383 (471)
...+ .+... ....+++ .. +.++.+-...+.|..++..+|+....+..
T Consensus 200 ----------------------~~~~~~~~~~--~P~glav-~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 200 ----------------------RQAVVKGSLP--HPFALTL-FE-DILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp ----------------------CEEEECSCCS--CEEEEEE-ET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ----------------------eEEEecCCCC--CceEEEE-eC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 1111 11111 1456665 43 34445555678899999877776655543
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=2.1e-05 Score=75.55 Aligned_cols=114 Identities=17% Similarity=0.085 Sum_probs=67.2
Q ss_pred CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcce--------eEEEEecCCCCeEEEEEeCCCeEEEEeccccCccee
Q 012064 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNV--------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (471)
Q Consensus 72 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 143 (471)
++. ++.++.++.|.-+|..+|+.+.++........ ..+++ .+..++.++.|+.+..+|..+++..-.
T Consensus 68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEee
Confidence 444 44445534499999999999888742211110 12222 345677778899999999998887654
Q ss_pred eEeeceee--eEE-EEEEcc---CCCcEEEEEe------cCCeEEEEeccCCccceeee
Q 012064 144 KLLGKHQG--RAH-KLAIEP---GSPHVFYTCG------EDGLVQHFDLRTGAATELFT 190 (471)
Q Consensus 144 ~~~~~~~~--~v~-~~~~~~---~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 190 (471)
.....+.. .+. ...+.. +++..+++++ .++.|+.+|.++++.+....
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 33322110 111 111111 2222456654 37899999999999877554
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.57 E-value=0.00016 Score=63.62 Aligned_cols=225 Identities=8% Similarity=0.006 Sum_probs=136.5
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
...|+..++..........+. ......+++|++.+..++++-...+.|..+++........+... .....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~---------~l~~p 81 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS---------GLLSP 81 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE---------CCSCC
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC---------CCCCc
Confidence 457899998765422222222 33456789999876577777777889999998876432222111 11235
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee---CCc
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEF 283 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~ 283 (471)
..+++++.+++++++-...+.|.++++..... ..+..........+++.|.+.+|.... .+.
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~ 146 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---------------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 146 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE---------------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence 67899886566777766778999999865321 111112234568899998766655554 346
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeCCCCcEEEEe-
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSG- 361 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~g~~l~~g- 361 (471)
|+.++++... ...+ ..... ....+++ +++++.|+.+
T Consensus 147 I~r~~~dG~~---------------------------------------~~~~~~~~l~--~Pnglav-d~~~~~lY~aD 184 (318)
T 3sov_A 147 IERAGMDGSS---------------------------------------RFIIINSEIY--WPNGLTL-DYEEQKLYWAD 184 (318)
T ss_dssp EEEEETTSCS---------------------------------------CEEEECSSCS--CEEEEEE-ETTTTEEEEEE
T ss_pred EEEEEcCCCC---------------------------------------eEEEEECCCC--CccEEEE-eccCCEEEEEE
Confidence 7777765321 1111 11111 2578888 9876666655
Q ss_pred eCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 362 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+..+.|+.+|+..........+.......+++.. +.++.+-...+.|..++..+++.
T Consensus 185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 4568899999864333222333344567777753 34555555678899998866554
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.55 E-value=0.00024 Score=62.57 Aligned_cols=230 Identities=11% Similarity=0.013 Sum_probs=131.8
Q ss_pred EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCC-EEEEecCCCeEEEEEC
Q 012064 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW 90 (471)
Q Consensus 12 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~ 90 (471)
+|+.+.. ..|+..++++++.. ..+. .......++|++++. ++++-..++.|..++.
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~---------------------~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~ 59 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYT---------------------SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCE---------------------EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEECC-CeEEEEECCCcceE---------------------ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEEC
Confidence 3444433 45888888865543 1222 234578999998654 4555556789999998
Q ss_pred CC---CceEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEE
Q 012064 91 KT---ERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (471)
Q Consensus 91 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (471)
.. +.....+....-.....+++.+ .+ +.+++-...+.|.+.++....... ...........++++|.+..++
T Consensus 60 ~g~~~~~~~~~~~~~~~~~p~glavd~--~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 60 DRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVADTKGVKRKT--LFRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp --------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEETTSSSEEE--EEECTTCCEEEEEEETTTTEEE
T ss_pred CCCCCCcccEEEEeCCCCCcCEEEEee--cCCeEEEEECCCCEEEEEeCCCCceEE--EEECCCCCcceEEeCCCCCEEE
Confidence 75 1222233222224557888886 44 444555667899999876433221 1222334578999999765665
Q ss_pred EEEecC-CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCC
Q 012064 167 YTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (471)
Q Consensus 167 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (471)
++.... +.|..+++..... ..+... .....+.++++|+++.+.++-...+.|..+|+......
T Consensus 136 ~~d~~~~~~I~~~~~dG~~~-~~~~~~---------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~------ 199 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGVDI-YSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK------ 199 (316)
T ss_dssp EEECSSSCEEEEEETTSCCE-EEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------
T ss_pred EEccCCCCeEEEEcCCCCCe-EEEEEC---------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE------
Confidence 555443 7888888764332 222111 11246899999986666666667789999998743210
Q ss_pred CCCCcCCCCcccC--CCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCCC
Q 012064 246 QPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (471)
Q Consensus 246 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~~ 294 (471)
.+.. ........+++.. +.++++-. .+.|..++..++..
T Consensus 200 ---------~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 200 ---------TILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp ---------EEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCC
T ss_pred ---------EEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcc
Confidence 0100 1112346677753 43333333 45788888766543
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.50 E-value=9e-05 Score=73.80 Aligned_cols=117 Identities=13% Similarity=0.220 Sum_probs=71.4
Q ss_pred ceeEEEEe-cCCCCeEEEEEeC-CC----eEEEEecccc-CcceeeEeeceeeeEEEEEEccCCCcEEEEEecC----Ce
Q 012064 106 NVFQAKIM-PFTDDRSIVTCAA-DG----QVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED----GL 174 (471)
Q Consensus 106 ~v~~~~~~-~~~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~ 174 (471)
.+...+|+ | ||++|+.+.. +| +|+++|+.++ +.+.. .+. .....++|+||++.++++...+ ..
T Consensus 175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 67889999 9 9998885543 22 5999999887 53221 111 2235689999996655554321 36
Q ss_pred EEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe---CCCeEEEEEcCCC
Q 012064 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKY 236 (471)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~ 236 (471)
|+.+++.+++....+..... .......+.|+|| +++|+... ....|+++|+.+.
T Consensus 249 v~~~~lgt~~~~~~lv~~~~-------~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEH-------NPLFSAFMYKAAD-TNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEETTSCGGGCEEEEECC-------CTTCEEEEEECTT-SSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCchhcEEEEecC-------CCceEEEEEECCC-CCEEEEEecCCCCceEEEEECCCC
Confidence 88888877653322111100 1113457899999 55555443 2346888888764
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.44 E-value=0.00049 Score=62.80 Aligned_cols=229 Identities=10% Similarity=0.019 Sum_probs=135.9
Q ss_pred EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc---cceeeeecccCC
Q 012064 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA---ATELFTCRPIDD 196 (471)
Q Consensus 120 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~ 196 (471)
+|+.+. ...|+..++....... +......+..++|++.+..++++-...+.|+.+++.... ....+...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~---~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---- 156 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---- 156 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS----
T ss_pred eeEEec-cceeEEEccCCcceeE---eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC----
Confidence 444443 4678888887654433 223445678999998776676766677899999987632 11111110
Q ss_pred cCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeE
Q 012064 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (471)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (471)
.......+++++.++++.++-...+.|.+.++..... ..+..........++++|.+.+|
T Consensus 157 -----~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~---------------~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 157 -----DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---------------KTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp -----SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE---------------EEEEECSSCCEEEEEEETTTTEE
T ss_pred -----CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce---------------EEEEeCCCCCcceEEEecccCeE
Confidence 1124678899886566777767788899998875431 11111223346889999976666
Q ss_pred EEee---CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeC
Q 012064 277 VSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFG 352 (471)
Q Consensus 277 ~~~~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s 352 (471)
.... .+.|+..+++... ...+ ..... ....+++ +
T Consensus 217 y~td~~~~~~I~~~~~dG~~---------------------------------------~~~~~~~~l~--~P~glav-d 254 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVD---------------------------------------IYSLVTENIQ--WPNGITL-D 254 (400)
T ss_dssp EEEECSSSCCEEEEETTSCS---------------------------------------CEEEECSSCS--CEEEEEE-E
T ss_pred EEEeCCCCCEEEEEeCCCCc---------------------------------------cEEEEECCCC--ceEEEEE-E
Confidence 5554 2468888775421 1111 11111 2678888 8
Q ss_pred CCCcEEEEee-CCCeEEEEEccCCeeeEEecC--CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 353 PKCEYVVSGS-DCGRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 353 ~~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
++++.|+.+. ..+.|+.+|+........... .-.....+++. .+.++++-...+.|..++..+++.
T Consensus 255 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 255 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 8777776654 467899999865433322222 22345677773 334555666678898888655543
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.44 E-value=0.00021 Score=65.84 Aligned_cols=158 Identities=14% Similarity=0.091 Sum_probs=93.1
Q ss_pred cEEEEEEcCC--CCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC---Ce-EEEEecc
Q 012064 63 CVNTVSFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQ-VRHAQIL 136 (471)
Q Consensus 63 ~V~~~~~s~~--g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~-i~iwd~~ 136 (471)
....++|+|+ +..|..+...+.|+.+|..+++.. .+ .........+++++ +++.+++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~-~~~~~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IK-TTNIGQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EE-CCCCSCEEEEEECT--TCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-Ee-ecCCCCccEEEECC--CCCEEEEcCCCCcccceEEEEECC
Confidence 4568999985 334444444488999998777654 33 23445688999999 99844443311 11 3333322
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
........+. .......++++|++.+++++-..++.|+.+|..++.....+..... ......++|+|++.
T Consensus 216 -~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 216 -SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------KGSNFHIVWHPTGD 285 (433)
T ss_dssp -GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC--------CSSCEEEEECTTSS
T ss_pred -CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC--------CCCcccEEEeCCCC
Confidence 2221111122 2234567889994336666666778899999987765222221110 11124699999953
Q ss_pred ceEEEEeCCCeEEEEEcC
Q 012064 217 NLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~ 234 (471)
.++++-...+.|+.++..
T Consensus 286 ~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEEETTTTEEEEEEBC
T ss_pred EEEEEeCCCCEEEEEeCC
Confidence 355555667889998875
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00036 Score=64.30 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=96.2
Q ss_pred cEEEEEEcC-CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-C---eEEEEeccc
Q 012064 63 CVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-G---QVRHAQILE 137 (471)
Q Consensus 63 ~V~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g---~i~iwd~~~ 137 (471)
....++++| ++..|..+...+.|+.+|...+.. ..+. ........++|++ ++++|+.+... + ...+|....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~~~-~~~~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-STVY-SGLSKVRTICWTH--EADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EEEE-CCCSCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EEEe-cCCCCcceEEEeC--CCCEEEEEeCCCCcccceEEEEeCC
Confidence 457889998 455555555548899999876654 3332 3445678999999 99866666542 2 222333233
Q ss_pred cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCc
Q 012064 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (471)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (471)
+.......+. .......++++|++.+++++-..++.|..++..++......... .......++|+|++..
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------DSGWEFHIQFHPSGNY 283 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------SSSCCEEEEECTTSSE
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------CCCcceeEEEcCCCCE
Confidence 3332111222 22345778899944367666667789999998866542222211 1123578999998432
Q ss_pred eEEEEeCCCeEEEEEcCC
Q 012064 218 LFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~ 235 (471)
++++-...+.|..++...
T Consensus 284 lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEETTTTEEEEEEEET
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 555555677888887653
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.43 E-value=0.0016 Score=63.04 Aligned_cols=199 Identities=11% Similarity=0.049 Sum_probs=119.4
Q ss_pred ccEEEEEEcCCCCEE-EEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEeccccC
Q 012064 62 GCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERG 139 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 139 (471)
..+..++|++.+..| .+-..++.|..+++..... ..+..........+++.+ .+ +.+++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~GlAvD~--~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGMAVDW--LGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceEEEEe--CCCEEEEEECCCCEEEEEecCCCc
Confidence 457899999865554 4555678999999875443 333232234567888886 44 444555556889998886543
Q ss_pred cceeeEeeceeeeEEEEEEccCCCcEEEEE-ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
... .....-....++++.|....++++- +..+.|...++.......... .....+.++++++++.+
T Consensus 114 ~~~--l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-----------~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 114 RQV--LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-----------NVGRANGLTIDYAKRRL 180 (628)
T ss_dssp CEE--EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----------SCSSEEEEEEETTTTEE
T ss_pred EEE--EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-----------CCCCcceEEEccccCEE
Confidence 221 1223335568999998654555543 235688888887655433322 12246899999985555
Q ss_pred EEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecCCCC
Q 012064 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (471)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~~~~ 293 (471)
.++-...+.|..+|+..... ............+++.. +.++++-. .+.|...|..++.
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~----------------~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR----------------EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC----------------EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEECCCCEEEEEcCCCCce----------------EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 56556778899999875431 11111122345667655 33333322 4567777766554
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.42 E-value=0.0009 Score=64.76 Aligned_cols=187 Identities=10% Similarity=0.034 Sum_probs=117.1
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEE-EEeCCCeEEEEeccccCcceeeEeeceeee
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGR 152 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 152 (471)
.+|+.+ ....|+..+++..+....+....-.....++|.+ .+..|+ +-..++.|..+++....... .+......
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~--v~~~g~~~ 81 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEH--VVEFGLDY 81 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSC
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEE--EEeCCCCC
Confidence 345544 4467999999876543333223345678999998 655555 44557889888876543222 12222245
Q ss_pred EEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE-eCCCeEEEE
Q 012064 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTRLY 231 (471)
Q Consensus 153 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~ 231 (471)
...+++.+.+.+++++-...+.|.+.++.......... . .......++++|.++.++.+- +..+.|...
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~---------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-K---------DLDSPRALALDPAEGFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-S---------SCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-C---------CCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence 67889987776777777777899999987654322221 1 122468999999756555543 235678888
Q ss_pred EcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCC
Q 012064 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (471)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~ 291 (471)
++..... ..+. ..-.....++++++++.|..+. .+.|..+++..
T Consensus 152 ~~dG~~~---------------~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 152 AMDGSER---------------TTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp ETTSCSC---------------EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eCCCCce---------------EEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 7765431 1111 1234578999999887777665 45788888865
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.00047 Score=68.33 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=113.5
Q ss_pred EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEE-EEEeCCCeEEEEeccccCc--ceeeEeeceee
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGG--VETKLLGKHQG 151 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~ 151 (471)
+|+.+.. ..|+..++...+..... .....+..++|.+ ....| ++-...+.|+.+++..... .....+.....
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred ccccccc-cceeEeeccCCcceeee--cCCCceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 4444433 45788888765543332 3345678899988 55544 4545567888888865321 11122332334
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC-CeEEE
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRL 230 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i 230 (471)
....|++.+.+.+++++-...+.|.+.++........+. . .......|+++|.++.++++-... +.|..
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~---------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E---------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 541 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-C---------TTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-C---------CCCCcceEEEecCCCCEEEecCCCCCeEEE
Confidence 567899998876777777788999999998654333322 1 112468999999855555544333 67888
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCC
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM 291 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~ 291 (471)
.++..... ..+....-.....|++++.+..|+.+. .+.|..+++..
T Consensus 542 ~~~dG~~~---------------~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 542 GGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EecCCCce---------------EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 88865431 111222234578899998777776665 34788888764
No 287
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.40 E-value=0.00074 Score=57.79 Aligned_cols=271 Identities=11% Similarity=0.133 Sum_probs=163.1
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.+..|.|-|+.++..+.+....-+..| .+| ..+.++.-. ..++.++|+++........+ ...|.--.|-.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~AdsAI----MnP--~~~ViALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis 116 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISADSAI----MNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 116 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCSEEE----ECS--SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCEEEEEECS
T ss_pred CCCEEEEEECCCCCCccccccccceee----eCC--CccEEEEec-CCeEEEechHHhhhhcceec---CCccEEEEecC
Confidence 344788999988766544333333333 578 777776655 67899999988776655332 35676677766
Q ss_pred CCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE-EEe------CCCeEEEEE
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAG------SDEYTRLYD 232 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~------~dg~i~i~d 232 (471)
+. .++..+ +..++.|+++.. .+.+.+..+... ....|-.-..+++. ++++ +|- -.|.+.+|.
T Consensus 117 ~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L------~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS 186 (365)
T 2xzh_A 117 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYS 186 (365)
T ss_dssp SS--EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG------TTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEE
T ss_pred CC--eEEEEc-CCcEEEEcccCCCCCceeeecchhc------ccceEEEEEECCCC-CEEEEEeEeccCCccceeEEEEe
Confidence 55 234333 357999999753 444455443322 23467788888984 5544 332 236788999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC---CCeEEEeeC----CcEEEEecCCCC-CCCCCCCCCcc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVS 304 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~----~~i~i~d~~~~~-~~~~~~~~~~~ 304 (471)
.+... .....+|......+.+..+ ..+++.+.. +++++.++.... ...++.
T Consensus 187 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~----- 245 (365)
T 2xzh_A 187 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 245 (365)
T ss_dssp TTTTE----------------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-----
T ss_pred ecccc----------------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-----
Confidence 87654 2344555544433333221 124444432 478888885431 111111
Q ss_pred ccccccccCCCCCCccCCCCCCcccccCCeee-ec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
.+....+ .. .... ...++.. ++.-..++.-+.-|.|++||++++.++..-+
T Consensus 246 -------------------------kk~vdi~fppea~~D-FPVamqv-s~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 246 -------------------------KKAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp -------------------------CEEEEECCCTTCTTC-CEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -------------------------cccceeeCCccccCC-ceEEEEe-cccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 0111111 11 1111 2446666 7777888888999999999999999987776
Q ss_pred CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
-....|..-+-+....-++.....|.|.--.++....
T Consensus 299 IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 299 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred cCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 6666776666555555566666788877777776555
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00036 Score=64.59 Aligned_cols=274 Identities=9% Similarity=-0.003 Sum_probs=140.3
Q ss_pred eeEEEEecCCC-CeEEEEE-eCCCeEEEEeccccCcceeeEee-ceeeeEEEEEE-------ccCCCcEEEEEecCC---
Q 012064 107 VFQAKIMPFTD-DRSIVTC-AADGQVRHAQILERGGVETKLLG-KHQGRAHKLAI-------EPGSPHVFYTCGEDG--- 173 (471)
Q Consensus 107 v~~~~~~~~~~-~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~-------~~~~~~~l~~~~~dg--- 173 (471)
...|+|.| . ...|+.+ ...+.|++.|+.++......... ........++| ++++..++++...++
T Consensus 141 p~~la~dp--~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDP--LNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEET--TEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEcc--CCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 45788987 4 3444444 44467888887665443221111 01235789999 999964555544432
Q ss_pred ---eEEEEeccC-Cccc-----eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC-------CCc
Q 012064 174 ---LVQHFDLRT-GAAT-----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR-------KYK 237 (471)
Q Consensus 174 ---~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-------~~~ 237 (471)
.+.+++... +... ..+. .......++++|+++.++++-..++.|+.+|+. ++.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~-----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIA-----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEE-----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred cCceEEEEecCCCCceeecccceeec-----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 366666433 2222 1111 112356788999767777777888999999997 443
Q ss_pred cCCCCCCCCCCCcCCCCc-ccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 238 WDGSTDFGQPADYFCPPN-LIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
.........+- .... ...........++|+|+|++|..+. ...|+.++.........-. ...+.....
T Consensus 288 ~~tp~~~~~~g---~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~------~~~aG~~g~ 358 (496)
T 3kya_A 288 SWDPIVKNNPN---TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP------YNFVGGYKQ 358 (496)
T ss_dssp CCCCBGGGCTT---TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC------EEEEEBTTB
T ss_pred eeccccccccc---ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc------EEecCCCCC
Confidence 20000000000 0000 0111123457899999999655554 4478887654321000000 000000000
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCceeEee-eeeeeC-------CCCcEEEEeeCCCeEEEEEccCCeeeEEecCC--
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVK-GVNFFG-------PKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-- 384 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s-------~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h-- 384 (471)
.+ ..+. ......|. . .. .+.. . ++|.++++=..++.|+.++ .+|. +.++-+.
T Consensus 359 ~G------~~DG---~~~~a~f~---~---P~~gv~v-d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~ 420 (496)
T 3kya_A 359 SG------YRDD---VGTEARMN---N---PCQGVFV-KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGA 420 (496)
T ss_dssp CC------CBCC---BGGGCBCS---S---EEEEEEE-ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCT
T ss_pred Cc------ccCC---cccccccC---C---CeEEEEE-ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccc
Confidence 00 0000 00000000 0 22 2222 3 4666666666778999998 4553 3333211
Q ss_pred ----------------------CcceEEEEEcCC-CCEEEEeecCCcEEEecCCCCCCc
Q 012064 385 ----------------------RHVVNCIEPHPH-STVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 385 ----------------------~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
-.....++++++ +.++++=....+|+.++++.....
T Consensus 421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred cccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 123678999997 776666667889999999875543
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.33 E-value=5.6e-06 Score=81.34 Aligned_cols=240 Identities=11% Similarity=0.017 Sum_probs=133.9
Q ss_pred CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe-CCCeEEEEeccc----cCcceeeEeeceeeeEEEEE
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILE----RGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~ 157 (471)
+.|+..++...+....+ .....+..++|.+ .+..|+.+. ..+.|+.+++.. ...... +.........++
T Consensus 386 ~~I~~id~~~~~~~~~~--~~~~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~gla 459 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLA 459 (699)
T ss_dssp TC-CEECTTSCCEECCS--CCCTTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCB--CCSCC--CCCEE
T ss_pred cceEEEeCCCCcceeee--ccCcceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEE--EeCCCCCcceEE
Confidence 56888888766543322 2234567889998 666666554 457898888865 111111 211122346688
Q ss_pred EccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC-CeEEEEEcCCC
Q 012064 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKY 236 (471)
Q Consensus 158 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~ 236 (471)
+.+.+.+++++-...+.|.++++........+.. .......++++|.++.++++-... +.|..+++...
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC----------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC----------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 8865556666666778899999876543322211 112357789999755555544333 67777776542
Q ss_pred ccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
.. ..+....-.....|+|+|++..|+.+. .+.|..+++.....
T Consensus 530 ~~---------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------------------- 574 (699)
T 1n7d_A 530 DI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------------------- 574 (699)
T ss_dssp CC---------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--------------------
T ss_pred Ce---------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--------------------
Confidence 21 011111123356799999876665555 44798888764210
Q ss_pred CCCCccCCCCCCcccccCCeeeec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEE
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 393 (471)
..+.. .........+++ ..+ .++++....+.|..++..+|+.+..+......+..|++
T Consensus 575 -------------------~~~~~~~~~~~~P~glav-d~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 575 -------------------KTILEDEKRLAHPFSLAV-FED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp -------------------EEECCCSSSCSSCCCCEE-ETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred -------------------EEEEecCCcCCCceEeEE-ECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 11100 000001334554 333 44455556789999998888887777543334455544
Q ss_pred c
Q 012064 394 H 394 (471)
Q Consensus 394 s 394 (471)
.
T Consensus 634 ~ 634 (699)
T 1n7d_A 634 F 634 (699)
T ss_dssp C
T ss_pred e
Confidence 3
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.32 E-value=0.0028 Score=61.21 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=124.6
Q ss_pred CCeEEEEeccccCcceeeEee-ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeee
Q 012064 127 DGQVRHAQILERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (471)
.+.|+..++........ .+. ..-..+.+++|.+.+..++++-...+.|+.+++........+.. ....
T Consensus 325 ~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~----------~~~~ 393 (619)
T 3s94_A 325 RTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA----------QIAH 393 (619)
T ss_dssp SSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSC
T ss_pred ccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC----------CCCC
Confidence 34566666654432211 111 12245678999986656666666788899999876543322211 1124
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC---C
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---E 282 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~ 282 (471)
...+++++.++++.++-...+.|.+.++..... ..+....-.....+++.|...+|..... .
T Consensus 394 p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---------------~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~ 458 (619)
T 3s94_A 394 PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---------------KILISEDLEEPRAIVLDPMVGYMYWTDWGEIP 458 (619)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECTTCCSEEEEEEETTTTEEEEEECSSSC
T ss_pred cCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---------------EEEEECCCCCeeeEEEEcCCCcEEEecCCCCC
Confidence 568889876566777767788999998875421 1112222345789999997445544442 3
Q ss_pred cEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeCCCCcEEEEe
Q 012064 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSG 361 (471)
Q Consensus 283 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~g~~l~~g 361 (471)
.|...+++.. ....+ ...-. ....+++ +++++.|+.+
T Consensus 459 ~I~r~~~dG~---------------------------------------~~~~l~~~~l~--~P~Glal-D~~~~~LY~a 496 (619)
T 3s94_A 459 KIERAALDGS---------------------------------------DRVVLVNTSLG--WPNGLAL-DYDEGKIYWG 496 (619)
T ss_dssp EEEEEETTSC---------------------------------------SCEEEECSSCS--CEEEEEE-ETTTTEEEEE
T ss_pred EEEEEccCCC---------------------------------------ccEEEEeCCCC--CCeeeEE-cccCCEEEEE
Confidence 5666665431 11111 11112 2667887 8766666655
Q ss_pred e-CCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 362 S-DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 362 ~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
. ..+.|..+++........+...-.....++...+ .++++-...+.|..-+..++..
T Consensus 497 D~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~~ 554 (619)
T 3s94_A 497 DAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAER 554 (619)
T ss_dssp ETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCCE
T ss_pred ECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCce
Confidence 4 4578999998543332222222223345555433 3334434456676666666543
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.30 E-value=0.00041 Score=63.95 Aligned_cols=249 Identities=8% Similarity=0.072 Sum_probs=126.2
Q ss_pred EEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC---Ce-EEE
Q 012064 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD---RR-VIL 87 (471)
Q Consensus 12 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d---~~-i~i 87 (471)
.|..+...+.|+.++.++++.. .+.........++++++|+++++.... .. +..
T Consensus 154 ~Lyv~D~~~~I~~id~~~g~v~----------------------~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 154 DLYWVGQRDAFRHVDFVNQYVD----------------------IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp EEEEECBTSCEEEEETTTTEEE----------------------EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred EEEEEeCCCCEEEEECCCCEEE----------------------EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 3444433377888887766544 222334567899999999955554321 22 333
Q ss_pred EECCCCceE-EEeecCCCcceeEEEEecCCCCeEEEEE-eCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcE
Q 012064 88 WDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (471)
Q Consensus 88 wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (471)
.+...+... ..+ . .-.....+++.| ++..|+.+ ..++.|+.++..++.........+....-..++|+|++..+
T Consensus 212 ~~~~~~~~~~~~~-~-~~~~P~giavd~--~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 212 FTRASGFTERLSL-C-NARGAKTCAVHP--QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp ECGGGTTCCEEEE-E-ECSSBCCCEECT--TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred EECCCCeeccccc-c-ccCCCCEEEEeC--CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 333222110 111 1 123345678887 55555544 45678888887655431211111111223469999999656
Q ss_pred EEEEecCCeEEEEeccC--Cccc--eeeeecccCCcCcce-------eeeeeEEEEE---------cCCCCceEEEEeCC
Q 012064 166 FYTCGEDGLVQHFDLRT--GAAT--ELFTCRPIDDRRNYM-------TVVNLNAIAI---------DPRNANLFAVAGSD 225 (471)
Q Consensus 166 l~~~~~dg~i~iwd~~~--~~~~--~~~~~~~~~~~~~~~-------~~~~v~~~~~---------~p~~~~~l~~~~~d 225 (471)
+++-...+.|+.+++.. +... ..+... ....++. .......+++ .++ +.++++-...
T Consensus 288 Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~--~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~-g~lyvaD~~n 364 (433)
T 4hw6_A 288 YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQ--HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE-YDFYFCDRDS 364 (433)
T ss_dssp EEEETTTTEEEEEEBCTTTCCBCCCEEEEEC--TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC-EEEEEEETTT
T ss_pred EEEeCCCCEEEEEeCCCCCcccCcEEEEEec--CCCCccCCCcccceEEcCCccEEEEccccccccCCC-CcEEEEECCC
Confidence 66667778999988653 3221 111111 0000000 1123567888 555 5666666677
Q ss_pred CeEEEEEcCCCccCCCCCCCCC-CCcCCCC-cccCCCccceEEEEEc-CCCCeEEEee-CCcEEEEecC
Q 012064 226 EYTRLYDIRKYKWDGSTDFGQP-ADYFCPP-NLIGDEQVGITGLAFS-DQSELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~l~~~~-~~~i~i~d~~ 290 (471)
+.|+.++. .+........+.. ...+..- ......-.....++++ ++|.++++-. ...|+.++++
T Consensus 365 ~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 365 HTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 88998885 3322111000000 0000000 0000112346789999 5665554443 4578888764
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.29 E-value=0.0039 Score=64.64 Aligned_cols=76 Identities=9% Similarity=-0.023 Sum_probs=52.2
Q ss_pred cccEEEEEEcCC------CCEEEEecC-CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEE
Q 012064 61 RGCVNTVSFNTD------GDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (471)
Q Consensus 61 ~~~V~~~~~s~~------g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 133 (471)
...|.|+++.|. ++++|.|.. |++++|+++.+.+.+....-+......++.+.......+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 467999999863 369999996 9999999998776654432222234445554432245688889999987666
Q ss_pred ecc
Q 012064 134 QIL 136 (471)
Q Consensus 134 d~~ 136 (471)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 554
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.25 E-value=0.0022 Score=56.76 Aligned_cols=275 Identities=9% Similarity=0.047 Sum_probs=142.6
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEee---cCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 137 (471)
...+.++.|.+++..+++| .+|.| +...+.|+.=.... ......+.++.|.| +..++ ++.++.|. ...+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i~--~S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIML--HTTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEEE--EESS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeEE--EECC
Confidence 4579999998888877754 56755 33334343211111 11244788898875 34444 45566443 3333
Q ss_pred cCcc-eeeEee-ceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCC
Q 012064 138 RGGV-ETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (471)
Q Consensus 138 ~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (471)
+... ...... .+...+..+.+.+++ .+++ ++.++.|.. ....++.-...... ....+..+++.|+
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~g~v~~-S~DgG~tW~~~~~~---------~~~~~~~~~~~~~- 173 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNG-SAEM-ITNVGAIYR-TKDSGKNWQALVQE---------AIGVMRNLNRSPS- 173 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETT-EEEE-EETTCCEEE-ESSTTSSEEEEECS---------CCCCEEEEEECTT-
T ss_pred CCCCceECccccCCCCCeEEEEEECCC-CEEE-EeCCccEEE-EcCCCCCCEEeecC---------CCcceEEEEEcCC-
Confidence 2211 111011 123456777777666 4544 445564432 11223222222111 1235788999997
Q ss_pred CceEEEEeCCCeEEE-EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCC
Q 012064 216 ANLFAVAGSDEYTRL-YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (471)
Q Consensus 216 ~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~ 294 (471)
+.+++.+. +|.++. .|-...... .........+..+.+.+++++++.+.++.+++.+.+.+..
T Consensus 174 ~~~~~~g~-~G~~~~S~d~gG~tW~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 174 GEYVAVSS-RGSFYSTWEPGQTAWE---------------PHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp SCEEEEET-TSSEEEEECTTCSSCE---------------EEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred CcEEEEEC-CCcEEEEeCCCCCcee---------------ECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence 56666654 444433 332111100 0011223467888999999888777777777664221110
Q ss_pred CCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCee--eecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEc
Q 012064 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV--YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (471)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~ 372 (471)
-. .+.. +. ... .+..+.+ .+++..++++. +|.| ++..
T Consensus 238 W~-----------------------------------~~~~~~~~-~~~--~~~~v~~-~~~~~~~~~g~-~g~i-~~S~ 276 (327)
T 2xbg_A 238 WG-----------------------------------ELLSPLRR-NSV--GFLDLAY-RTPNEVWLAGG-AGAL-LCSQ 276 (327)
T ss_dssp EC-----------------------------------CCBCTTSS-CCS--CEEEEEE-SSSSCEEEEES-TTCE-EEES
T ss_pred eE-----------------------------------eccCCccc-CCc--ceEEEEe-cCCCEEEEEeC-CCeE-EEeC
Confidence 00 0000 00 111 2667777 78887777665 6766 3444
Q ss_pred cCCeeeEEec---CCCcceEEEEEcCCCCEEEEeecCCcEEEecC
Q 012064 373 KGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (471)
Q Consensus 373 ~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 414 (471)
..|+.-..+. .....+..+.|.++++ ++.++.+|.|.-++-
T Consensus 277 DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 277 DGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp STTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 4454444443 2345678888875554 556667898777664
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00038 Score=64.18 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=86.6
Q ss_pred CCC-CCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC-C-
Q 012064 6 NNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-D- 82 (471)
Q Consensus 6 ~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~-d- 82 (471)
++| ++..|.++...+.|+.+|.++++.. .+.........++|+++|++|+.+.. +
T Consensus 144 vdp~~~g~Lyv~d~~~~I~~id~~~~~v~----------------------~~~~~~~~P~~ia~d~~G~~lyvad~~~~ 201 (430)
T 3tc9_A 144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVS----------------------TVYSGLSKVRTICWTHEADSMIITNDQNN 201 (430)
T ss_dssp EETTEEEEEEEEEBTEEEEEEETTTTEEE----------------------EEECCCSCEEEEEECTTSSEEEEEECCSC
T ss_pred ECCCCCCeEEEEeCCCcEEEEECCCCEEE----------------------EEecCCCCcceEEEeCCCCEEEEEeCCCC
Confidence 444 2344444444477777777754433 22223456789999999996655544 1
Q ss_pred --C-eEEEEECCCCceE--EEeecCCCcceeEEEEecCCCCeEEEE-EeCCCeEEEEeccccCcceeeEeeceeeeEEEE
Q 012064 83 --R-RVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (471)
Q Consensus 83 --~-~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 156 (471)
. .+...+ ..+... ..+ . .......+++.| ++..|+. -..++.|..++............. .......+
T Consensus 202 ~~~~~v~~~~-~~g~~~~~~~l-~-~~~~p~giavdp--~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gi 275 (430)
T 3tc9_A 202 NDRPNNYILT-RESGFKVITEL-T-KGQNCNGAETHP--INGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHI 275 (430)
T ss_dssp TTSEEEEEEE-GGGTSCSEEEE-E-ECSSCCCEEECT--TTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEE
T ss_pred cccceEEEEe-CCCceeeeeee-c-cCCCceEEEEeC--CCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeE
Confidence 1 343344 333321 222 1 123456778888 5555554 445788999988654331111111 12346789
Q ss_pred EEccCCCcEEEEEecCCeEEEEeccC
Q 012064 157 AIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 157 ~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
+|+|+++.++++-...+.|..++...
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99999965667767788999988764
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.14 E-value=0.00068 Score=60.02 Aligned_cols=200 Identities=7% Similarity=-0.004 Sum_probs=106.9
Q ss_pred cccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc
Q 012064 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (471)
Q Consensus 61 ~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 140 (471)
.+.+..+.+.+++..++.+. ++.|.. ..+.|+.-.....++...+..+.+.| ++.+++.+...+..+-+|-. +..
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~--~~~~~~~g~~G~~~~S~d~g-G~t 195 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP--SGEYVAVSSRGSFYSTWEPG-QTA 195 (327)
T ss_dssp SSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT--TSCEEEEETTSSEEEEECTT-CSS
T ss_pred CCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcC--CCcEEEEECCCcEEEEeCCC-CCc
Confidence 34567788877777777664 454322 22334433333345566789999998 88877666543333333311 111
Q ss_pred ceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE
Q 012064 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (471)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (471)
-... -......+..+.+.+++ . ++.++.+|.+++.+...++.-..+...... ....+.++.+.|+ +.+++
T Consensus 196 W~~~-~~~~~~~~~~~~~~~~g-~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~------~~~~~~~v~~~~~-~~~~~ 265 (327)
T 2xbg_A 196 WEPH-NRTTSRRLHNMGFTPDG-R-LWMIVNGGKIAFSDPDNSENWGELLSPLRR------NSVGFLDLAYRTP-NEVWL 265 (327)
T ss_dssp CEEE-ECCSSSCEEEEEECTTS-C-EEEEETTTEEEEEETTEEEEECCCBCTTSS------CCSCEEEEEESSS-SCEEE
T ss_pred eeEC-CCCCCCccceeEECCCC-C-EEEEeCCceEEEecCCCCCeeEeccCCccc------CCcceEEEEecCC-CEEEE
Confidence 1111 12344567888998887 3 456667888777642222221111110000 1124788889886 55555
Q ss_pred EEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEec
Q 012064 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (471)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~ 289 (471)
++ .+|.+ .+....++--. ...........+..+.|.+++++++.+.++.+..++-
T Consensus 266 ~g-~~g~i-~~S~DgG~tW~------------~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 266 AG-GAGAL-LCSQDGGQTWQ------------QDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EE-STTCE-EEESSTTSSCE------------ECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred Ee-CCCeE-EEeCCCCcccE------------EcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 54 46666 33433332100 0000001124567788877777788888888777664
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0049 Score=57.08 Aligned_cols=161 Identities=12% Similarity=0.123 Sum_probs=96.2
Q ss_pred cEEEEEEcCC-C-CEEEEecCCCeEEEEECCCCceEEEeecC--CCcceeEEEE-------ecCCCCeEEEEEeCCC---
Q 012064 63 CVNTVSFNTD-G-DILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKI-------MPFTDDRSIVTCAADG--- 128 (471)
Q Consensus 63 ~V~~~~~s~~-g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~~l~s~~~dg--- 128 (471)
....|+|+|. + +++++....+.|++.|.+++........+ .......++| ++ ++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCCCCc
Confidence 3568999983 4 44444444467999998876654333111 1235788999 99 888676665543
Q ss_pred ----eEEEEeccc-cCcce-e--eEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEecc-------CCcc--------
Q 012064 129 ----QVRHAQILE-RGGVE-T--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-------TGAA-------- 185 (471)
Q Consensus 129 ----~i~iwd~~~-~~~~~-~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~-------- 185 (471)
.+.+++... +.... . ..+.. -.....++++|++..++++-..++.|..+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 255555333 12210 0 11222 22346788999665777777788899999998 5543
Q ss_pred ---ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 012064 186 ---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (471)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (471)
...+.... .......++|+|++..++++-.....|+.++..
T Consensus 297 ~g~~~~l~~~~--------~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFTIA--------DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEECS--------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEecC--------CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 11111100 122357899999943245555667889886654
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.09 E-value=0.00064 Score=58.80 Aligned_cols=170 Identities=10% Similarity=0.095 Sum_probs=109.2
Q ss_pred eccccccEEEEEEcCCCCEEEEec-CCCeEEEEECCCCceEEEeecC----C--CcceeEEEE---ecCCCCeEEEEEe-
Q 012064 57 LDKHRGCVNTVSFNTDGDILISGS-DDRRVILWDWKTERVKLSFHSG----H--NDNVFQAKI---MPFTDDRSIVTCA- 125 (471)
Q Consensus 57 l~~h~~~V~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~~~l~s~~- 125 (471)
++...-.--+++|++....|..++ ..++|..||...+........+ . ...+..+.| .| +++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~~ 85 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMKN 85 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEcc
Confidence 334444455789987554554444 7899999998755443332222 1 114678999 58 877777544
Q ss_pred ------------CCCeEEEEecc---ccCcceeeEeecee-----------eeEEEEEEccCCCcEEEEEecC-CeEEEE
Q 012064 126 ------------ADGQVRHAQIL---ERGGVETKLLGKHQ-----------GRAHKLAIEPGSPHVFYTCGED-GLVQHF 178 (471)
Q Consensus 126 ------------~dg~i~iwd~~---~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~l~~~~~d-g~i~iw 178 (471)
.+..+..+|+. +++......+.... .....++..++| +..++++.. +.|..+
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARV 164 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEE
Confidence 25779999998 66665543343221 358899999999 577878888 888888
Q ss_pred eccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 012064 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (471)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (471)
+..... ...+........ .....+.++++|+ ++.|++....|.+..+|++.
T Consensus 165 ~pdG~~-~~~~~~~~~~~~----~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SADGKT-VSTFAWESGNGG----QRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CTTSCC-EEEEEECCCCSS----SCCSCSEEEEETT-TTEEEEESSSSSEEEEECSS
T ss_pred eCCCCE-EeeeeecCCCcc----cccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCC
Confidence 876542 222222111100 2234679999999 56666666699999999873
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.08 E-value=0.0059 Score=60.54 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=100.8
Q ss_pred ccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCc---eEEEeecCCCcceeEEEEecCCCC-eEEEEEeCCCeEEEEe
Q 012064 60 HRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQ 134 (471)
Q Consensus 60 h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd 134 (471)
....+..++|++.+ .++++-...+.|+.+++.... ....+..........|++.+ .+ +++++-...+.|.+.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~--~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee--cCCcEEEEecCCCeEEEEe
Confidence 34567889999854 455565667889999886421 11222233445667888887 55 4555555678999999
Q ss_pred ccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC-CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
+...... ..+.........|++.|.+..++++-... +.|...++........+. . .....+.|++++
T Consensus 500 ldG~~~~--~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~---------~l~~P~GLavD~ 567 (791)
T 3m0c_C 500 TKGVKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-E---------NIQWPNGITLDL 567 (791)
T ss_dssp TTSSSEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-S---------SCSCEEEEEEET
T ss_pred CCCCeEE--EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-C---------CCCCceEEEEec
Confidence 8644322 11333334578999999865655554333 789998887554433322 1 122568899998
Q ss_pred CCCceEEEEeCCCeEEEEEcCCC
Q 012064 214 RNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
.++.++++-...+.|..+++...
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCeEEEEeCCCCcEEEEecCCC
Confidence 85555555556678999998654
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.04 E-value=0.0013 Score=57.35 Aligned_cols=193 Identities=10% Similarity=0.166 Sum_probs=111.9
Q ss_pred CCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecC--CCCe---EEE-EEeC--CCeEEEEecccc-Ccce
Q 012064 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF--TDDR---SIV-TCAA--DGQVRHAQILER-GGVE 142 (471)
Q Consensus 72 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---~l~-s~~~--dg~i~iwd~~~~-~~~~ 142 (471)
...+++.....+-+.+||+ +|+.+..+ .. +.++.+..-|. -.++ .++ +... +++|++|++... ..+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 3455665566778999999 78888776 22 45666666550 0222 223 3333 578999977422 1221
Q ss_pred ee-----EeeceeeeEEEEEE--ccC-CCcEEEEEecCCeEEEEeccC---C----ccceeeeecccCCcCcceeeeeeE
Q 012064 143 TK-----LLGKHQGRAHKLAI--EPG-SPHVFYTCGEDGLVQHFDLRT---G----AATELFTCRPIDDRRNYMTVVNLN 207 (471)
Q Consensus 143 ~~-----~~~~~~~~v~~~~~--~~~-~~~~l~~~~~dg~i~iwd~~~---~----~~~~~~~~~~~~~~~~~~~~~~v~ 207 (471)
.. .+......+..+++ +|. +...+++...+|.+..|++.. + +.++.+.. ...+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----------gsq~E 183 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----------NSQTE 183 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----------SSCEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----------CCCcc
Confidence 11 01011155677887 664 433577888889999999832 2 33344432 23577
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc--cCCCccceEEEEE--cCCCC-eEEEee--
Q 012064 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL--IGDEQVGITGLAF--SDQSE-LLVSYN-- 280 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~--~~~~~-~l~~~~-- 280 (471)
.+..++. ...|+.+-++..|..|+.+-..-... ..... ...-...+..+++ .++++ +|++++
T Consensus 184 gcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~----------~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 184 GMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNG----------TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EEEEETT-TTEEEEEETTTEEEEEECSTTSCSCC----------EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred eEEEcCC-CCeEEEecccceEEEEeCCcCCCCCc----------eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 8888887 56788888887777777542210000 00001 1111235777777 45555 666665
Q ss_pred CCcEEEEecC
Q 012064 281 DEFIYLFTQD 290 (471)
Q Consensus 281 ~~~i~i~d~~ 290 (471)
+++..+||..
T Consensus 253 ~~s~~Vydr~ 262 (355)
T 3amr_A 253 NSSYAIYDRQ 262 (355)
T ss_dssp GTEEEEEESS
T ss_pred CCEEEEEECC
Confidence 5589999986
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.01 E-value=0.0074 Score=53.95 Aligned_cols=272 Identities=11% Similarity=0.127 Sum_probs=166.3
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
.+..|.|-|+.++..+.+....-. +.-.+| ..+.++.-. ..++.++|+++........+ ...|.--.|-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP--~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS----EEEECS--SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceecccccc----eeeeCC--CCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEecC
Confidence 344889999988766544323333 334677 667666655 67999999988776554322 24565666765
Q ss_pred CCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE-EEe------CCCeEEEEE
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAG------SDEYTRLYD 232 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~------~dg~i~i~d 232 (471)
+. .++..+ +..|+.|+++.. .+.+.+..+... ....|..-..+++. ++++ +|- -.|.+.+|.
T Consensus 116 ~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp TT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------TTCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEE
T ss_pred CC--eEEEEc-CCeeEEecccCCCCchhheecchhc------ccceEEEEEECCCC-CeEEEEeecccCCcccceEEEee
Confidence 54 234333 457999999753 444455443322 23567888889984 5554 332 346788999
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCC---CeEEEeeC----CcEEEEecCCCC-CCCCCCCCCcc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVS 304 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~----~~i~i~d~~~~~-~~~~~~~~~~~ 304 (471)
.+... .....+|......+....+. .+++.+.. +++++.++.... ...++.
T Consensus 186 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~----- 244 (494)
T 1bpo_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP----- 244 (494)
T ss_dssp STTCC----------------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-----
T ss_pred ccccc----------------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-----
Confidence 87653 34455665555444443221 24444432 479999885531 111111
Q ss_pred ccccccccCCCCCCccCCCCCCcccccCCee-eec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQV-YKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
.+.... +.. .... ...++.. ++.-..++.-+.-|.|++||++++.++..-+
T Consensus 245 -------------------------kk~vdv~fppe~~~D-FPvamqv-s~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 245 -------------------------KKAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp -------------------------CEEEECCCCTTSTTC-CEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -------------------------ceeeeeeCCcccccC-ceeEEEe-cccCCEEEEEecCceEEEEecccceeeeeec
Confidence 000010 111 1111 1445666 7888888889999999999999999997776
Q ss_pred CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
-....|..-+-+....-++.....|.|.--.++.....
T Consensus 298 Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 298 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred ccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 66677776666666666666778888887777776553
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.00 E-value=0.0044 Score=55.38 Aligned_cols=261 Identities=13% Similarity=0.069 Sum_probs=122.1
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEe---eceeeeEEEEEEccC---CCcEEEEEecC-----Ce
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPG---SPHVFYTCGED-----GL 174 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~ 174 (471)
.-..++|.| +++.+++ ..+|.|++++ +++......+ .........++++|+ +..++++-... +.
T Consensus 32 ~P~~ia~~p--dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLP--DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECT--TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcC--CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 456899999 9985554 5569999888 3321111001 112346789999998 44555554433 67
Q ss_pred EEEEeccCCccc---eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC-------------CCeEEEEEcCCCcc
Q 012064 175 VQHFDLRTGAAT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDIRKYKW 238 (471)
Q Consensus 175 i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~~ 238 (471)
|..++...+... ..+...+... . .......++|.|+ +.+.++.+. .|.|.-++... +.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~--~--~~h~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~ 180 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARP--H--GLHSGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EP 180 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCT--T--CCCCCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SB
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCC--C--CCcCCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CC
Confidence 888887754221 1111111000 0 1112368999999 455554322 14565555542 11
Q ss_pred CCCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeEEEee-CCcE------EEEecCCCCCCCCCCCCCcccccccc
Q 012064 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFI------YLFTQDMGLGPNPPPSSPVSTRSEAS 310 (471)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i------~i~d~~~~~~~~~~~~~~~~~~~~~~ 310 (471)
.....+... ..........+ -.....++|+| +++++++-. .+.+ .+.-+..+...-- +...
T Consensus 181 p~~npf~~~-~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGw---------p~~~ 249 (352)
T 2ism_A 181 APGNPFLGR-RGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGW---------PRVV 249 (352)
T ss_dssp CTTCTTTTC-TTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCT---------TTCC
T ss_pred CCCCcccCC-CCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCC---------Cccc
Confidence 000000000 00001111111 12356789999 666555433 2221 1222222211000 0000
Q ss_pred ccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee------eEEecCC
Q 012064 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL------IRVIEAD 384 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~------~~~~~~h 384 (471)
.+. .......+...+..+.. ...++| .+|+++++.-..+.|...+++.... ...+...
T Consensus 250 ---g~~--------~~~~~~~p~~~~~~~~a---p~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 313 (352)
T 2ism_A 250 ---GRG--------NDPRYRDPLYFWPQGFP---PGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG 313 (352)
T ss_dssp ---SCC--------CCTTSCCCSEECTTCCC---EEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred ---CCC--------CCCCCcCCeEecCCCCC---CcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc
Confidence 000 00000112223322332 456666 3566666666667888887754321 1222222
Q ss_pred CcceEEEEEcCCCCEEEEee
Q 012064 385 RHVVNCIEPHPHSTVLASSG 404 (471)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~ 404 (471)
...+..+++.|||.++++..
T Consensus 314 ~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 314 FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp SCCEEEEEECTTSCEEEEEC
T ss_pred CCCeeEEEECCCCcEEEEEe
Confidence 35789999999998776654
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.99 E-value=0.0078 Score=53.75 Aligned_cols=280 Identities=11% Similarity=0.127 Sum_probs=129.4
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc--cee--eEeeceeeeEEEEEEccC---CCcEEEEEec-------
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VET--KLLGKHQGRAHKLAIEPG---SPHVFYTCGE------- 171 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~--~~~~~~~~~v~~~~~~~~---~~~~l~~~~~------- 171 (471)
.-..++|.| +++.++.+...|.|++++...... +.. ............++++|+ +..+.++-+.
T Consensus 19 ~P~~i~~~p--dG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLP--DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECS--TTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcC--CCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999 998344555679999887432211 110 001112345689999996 4355555333
Q ss_pred CCeEEEEeccCCc--c--cee-eeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC-------------CCeEEEEEc
Q 012064 172 DGLVQHFDLRTGA--A--TEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDI 233 (471)
Q Consensus 172 dg~i~iwd~~~~~--~--~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~ 233 (471)
...|..|++.... . .+. +...+ .... .......++|.|+ +.+.++.+. .|.|.-++.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p--~~~~--~~h~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMP--KLST--GNHFGGRLVFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSS--CCBS--SSCCCCCEEECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECC--CCCC--CcccCccEEECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 2356666665431 1 111 11111 0000 1112357999999 455444332 245666665
Q ss_pred CCCccCCCCCCCCCCCcC--CCCcccCCCccceEEEEEcC-CCCeEEEeeC--CcEEEEecCCCCCCC-CCCCCCccccc
Q 012064 234 RKYKWDGSTDFGQPADYF--CPPNLIGDEQVGITGLAFSD-QSELLVSYND--EFIYLFTQDMGLGPN-PPPSSPVSTRS 307 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~--~~i~i~d~~~~~~~~-~~~~~~~~~~~ 307 (471)
... ... ..|.... ....+....-.....++|+| +|+++++-.. +.=.+.-+..+.... +.......
T Consensus 172 dG~-~p~----~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~--- 243 (353)
T 2g8s_A 172 QGE-IPD----DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGIN--- 243 (353)
T ss_dssp TSC-CCT----TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBC---
T ss_pred CCC-CCC----CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCC---
Confidence 432 100 0010000 00111111123467899999 5655554332 112333232221110 00000000
Q ss_pred cccccCCCCCCccCCC-CCCcccccCCeeeecCCceeEeeeeeeeC------CCCcEEEEeeCCCeEEEEEccCCeeeEE
Q 012064 308 EASEMGSDHTSAASPS-TANTDVRIAPQVYKGHRNCVTVKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGGELIRV 380 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~s------~~g~~l~~g~~dg~v~iwd~~~~~~~~~ 380 (471)
. ++..+.... ........+...+..+.. ...+.|+. .+|+++++.-..+.|...++..++....
T Consensus 244 ----~--~~~~~~~~~~~~~~~~~~P~~~~~~~~a---p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~ 314 (353)
T 2g8s_A 244 ----Y--SGFKIPEAKGEIVAGTEQPVFYWKDSPA---VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTED 314 (353)
T ss_dssp ----T--TSSCCTTCCBSSCTTSCCCSEEESSCCC---EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred ----C--CCCccCcccCCCCCCccCCeEEeCCCcC---cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeee
Confidence 0 000000000 000000122233333332 55666632 2477777777778898888876654432
Q ss_pred --e-cCCCcceEEEEEcCCCCEEEEee-cCCcE
Q 012064 381 --I-EADRHVVNCIEPHPHSTVLASSG-IESDI 409 (471)
Q Consensus 381 --~-~~h~~~v~~~~~s~~~~~l~s~~-~dg~i 409 (471)
+ ......+..+++.|||.++++.. .+|.|
T Consensus 315 ~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 315 GRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred EEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 2 22234789999999999766543 34433
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.85 E-value=0.0001 Score=72.45 Aligned_cols=222 Identities=10% Similarity=0.017 Sum_probs=120.8
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCC----ccceeeeecccCCcCccee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG----AATELFTCRPIDDRRNYMT 202 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~ 202 (471)
.+.|+..++...+.... +. ....+.+++|++.+..++++-...+.|+.+++... .....+.. .
T Consensus 385 ~~~I~~id~~~~~~~~~--~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~----------~ 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------D 451 (699)
T ss_dssp TTC-CEECTTSCCEECC--SC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS----------C
T ss_pred ccceEEEeCCCCcceee--ec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC----------C
Confidence 35677777765443221 11 22346678999877566555556788999998751 11111100 1
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC-
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND- 281 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 281 (471)
......+++++.+++++++-...+.|.++++...... .+..........++++|.+.+|+.+..
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~---------------~l~~~~~~~P~giavDp~~g~ly~td~~ 516 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---------------TLFREQGSKPRAIVVDPVHGFMYWTDWG 516 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE---------------EECCCSSCCCCCEECCSSSSCCEECCCS
T ss_pred CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE---------------EEEeCCCCCcceEEEccCCCcEEEcccC
Confidence 1134568888765666666566788999988754311 111111223467788886655544432
Q ss_pred --CcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeeeCCCCcEE
Q 012064 282 --EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYV 358 (471)
Q Consensus 282 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~g~~l 358 (471)
+.|+.+++.... ...+ ..... ....+++ +|+++.|
T Consensus 517 ~~~~I~~~~~dG~~---------------------------------------~~~l~~~~l~--~PnGlav-d~~~~~L 554 (699)
T 1n7d_A 517 TPAKIKKGGLNGVD---------------------------------------IYSLVTENIQ--WPNGITL-DLLSGRL 554 (699)
T ss_dssp SSCCEEBCCSSSCC---------------------------------------CCEESCSSCS--SCCCEEE-CTTTCCE
T ss_pred CCCeEEEEeCCCCC---------------------------------------eeEEEeCCCC--CccEEEE-eccCCEE
Confidence 456666654321 0111 01111 1567887 8876655
Q ss_pred EEe-eCCCeEEEEEccCCeeeEEecC--CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 359 VSG-SDCGRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 359 ~~g-~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+.+ ...+.|+.+++........+.. .......|++..+ .++++....+.|..++..+++.
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 544 4567899999864333222221 1223445566543 4555666678899988765543
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.85 E-value=0.0039 Score=54.48 Aligned_cols=194 Identities=12% Similarity=0.209 Sum_probs=111.7
Q ss_pred CCCcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCC----CC---E-EEEe
Q 012064 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GD---I-LISG 79 (471)
Q Consensus 8 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~----g~---~-l~s~ 79 (471)
|...++++...++-+.+||+ +|+.++ .+.. +.++.+..-|+ |+ + +++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~---------------------~~~~--g~~nnVD~r~~~~l~g~~~dla~as~ 93 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLH---------------------SYNT--GKLNNVDIRYDFPLNGKKVDIAAASN 93 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEE---------------------EECC--SCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEE---------------------EccC--CCcccEEEecccccCCceEeEEEEeC
Confidence 34456666667789999999 588773 3432 44555555552 22 2 3333
Q ss_pred cC--CCeEEEEECC--CCceEEEeec---C--CC-cceeEEEE--ecCCCC-eEEEEEeCCCeEEEEeccccC-c-c---
Q 012064 80 SD--DRRVILWDWK--TERVKLSFHS---G--HN-DNVFQAKI--MPFTDD-RSIVTCAADGQVRHAQILERG-G-V--- 141 (471)
Q Consensus 80 ~~--d~~i~iwd~~--~~~~~~~~~~---~--~~-~~v~~~~~--~~~~~~-~~l~s~~~dg~i~iwd~~~~~-~-~--- 141 (471)
-. +++|.+|++. +++ +..+.. . .. ..++.+++ +|. .+ .++++...+|.+..|++.... . .
T Consensus 94 R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~-~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 94 RSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQK-TGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp CSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCC-CCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 34 5789999773 333 444411 0 11 56677777 662 23 368888889999999985421 1 1
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc--cceeeeecccCCcCcceeeeeeEEEEE--cCCCCc
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNAN 217 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~ 217 (471)
....+. ....+..+...+.. ..|+.+-++..|..++.+... ....+....... -...+..|++ .+++..
T Consensus 172 lVR~f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-----l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 172 KVRAFK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-----LTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp EEEEEE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-----BCSCEEEEEEEECGGGCE
T ss_pred EEEEec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-----cccCcceEEEEecCCCCE
Confidence 111122 23567888888876 467888888777777754221 111221111110 1124677777 444332
Q ss_pred eEEEEe-CCCeEEEEEcC
Q 012064 218 LFAVAG-SDEYTRLYDIR 234 (471)
Q Consensus 218 ~l~~~~-~dg~i~i~d~~ 234 (471)
+|++++ .+....+||.+
T Consensus 245 yLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEGGGTEEEEEESS
T ss_pred EEEEEcCCCCEEEEEECC
Confidence 454444 67799999986
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.76 E-value=0.0012 Score=57.18 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc--CCCccceEEEEE---cCCCCeEEEee
Q 012064 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAF---SDQSELLVSYN 280 (471)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~~l~~~~ 280 (471)
..+++|++.++.++++.-..+.|..||...+..... . ..... ......+..+.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~---------~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V---------IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C---------CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e---------cCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 467899987555555555899999999875432111 0 01111 112335689999 68888877543
Q ss_pred --------------CCcEEEEecC---CCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCcee
Q 012064 281 --------------DEFIYLFTQD---MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (471)
Q Consensus 281 --------------~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (471)
+..+..||+. +++....... ... ....+...+.. ..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL------------------------~~~--~~~~~~~~g~~-~~ 137 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNF------------------------EKV--QDEFEKKAGKR-PF 137 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEES------------------------HHH--HHHHHHHHSSC-CE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecC------------------------ccc--ccccccccccc-cc
Confidence 3458889987 4422111000 000 00000000111 12
Q ss_pred EeeeeeeeCCCCcEEEEeeCC-CeEEEEEccCCeeeEEec------CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCC
Q 012064 344 TVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVIE------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (471)
Q Consensus 344 ~i~~~~~~s~~g~~l~~g~~d-g~v~iwd~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 416 (471)
....++. +++|+..++++.. +.|...+.. |+.+..+. ......+.|+++|+|+.|+.....|.+..+|+..
T Consensus 138 ~~nDvav-D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 138 GVVQSAQ-DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEE-CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCceeEE-CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3778887 9999999988888 888777764 33333321 1122467999999999888877799999999874
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.72 E-value=0.013 Score=51.90 Aligned_cols=159 Identities=13% Similarity=0.032 Sum_probs=89.4
Q ss_pred CCCCCCCCcEEEEec------------CCCeEEEEEcccCccccccccceecccccceeeeeeeEE-eccccccEEEEEE
Q 012064 3 DASNNNNNKRARTSV------------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAK-LDKHRGCVNTVSF 69 (471)
Q Consensus 3 ~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~ 69 (471)
|+...++|..+.+++ .+|.|.++|.++..... ..+..... +.........+.+
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~--------------~~l~~~g~~~~~~~f~PhGi~~ 119 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV--------------SELEIIGNTLDISSFNPHGIST 119 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE--------------EECEEECSSCCGGGCCEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce--------------EEEEccCCCCCcCceeeeeeEE
Confidence 444566665544442 68999999987432110 01111110 1112344556666
Q ss_pred cC--CCC--EEEEecC--CCeEEEEECCCCce----EEEeecCCCcceeEEEEecCCCCeEEEEEeC-------------
Q 012064 70 NT--DGD--ILISGSD--DRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA------------- 126 (471)
Q Consensus 70 s~--~g~--~l~s~~~--d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------- 126 (471)
.+ +|. ++++-.. +.+|.+|+++.+.. +..+....-...+++.+.+ +|.+.++...
T Consensus 120 ~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~ 197 (355)
T 3sre_A 120 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMH 197 (355)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHH
T ss_pred EECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhh
Confidence 55 453 3343222 56888888765432 2222111234578999999 9988777541
Q ss_pred ----CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccC
Q 012064 127 ----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 127 ----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
.|.+.-++. ++ .. .+...-...+.++|+||++.++++-+..+.|..|++..
T Consensus 198 ~~~~~g~vyr~d~--~~-~~--~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 198 LGLAWSFVTYYSP--ND-VR--VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TTCCCEEEEEECT--TC-CE--EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccCCccEEEEEEC--Ce-EE--EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 234444443 32 11 13333455789999999977767777789999999874
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.66 E-value=0.029 Score=50.06 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=123.4
Q ss_pred cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEe---eceeeeEEEEEEccC---CCcEEEEEec---C---
Q 012064 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPG---SPHVFYTCGE---D--- 172 (471)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~---d--- 172 (471)
..-..++|.| +++.+++ ..+|.|++++. +++ .....+ .........++++|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~p--dG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLG--GGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEE--TTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcC--CCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 3567899999 9985555 55699998873 332 111111 112345789999997 4355554432 3
Q ss_pred -CeEEEEeccCCc--cc--e-eeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC-------------CCeEEEEEc
Q 012064 173 -GLVQHFDLRTGA--AT--E-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDI 233 (471)
Q Consensus 173 -g~i~iwd~~~~~--~~--~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~ 233 (471)
..|..|+..... .. + .+...+ .. .......++|.|+ +.+.++.+. .|.|.-++.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~--~~----~~h~~~~l~~~pD-G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIP--GA----YIHNGGRIRFGPD-GMLYITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEE--CC----SSCCCCCEEECTT-SCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCC--CC----CCcCCceEEECCC-CcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence 567778776541 11 1 111111 00 1112467999999 455554322 245555554
Q ss_pred CCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcC-CCCeEEEeeC-C---cEEEEecCCCCCCC-CCCCCCccccc
Q 012064 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND-E---FIYLFTQDMGLGPN-PPPSSPVSTRS 307 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-~---~i~i~d~~~~~~~~-~~~~~~~~~~~ 307 (471)
... ... ..|.. .......+ -.....++|+| +|+++++-.. + .|.+.. .+...- +....
T Consensus 177 dG~-~p~----~npf~--~~~i~a~G-~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g------ 240 (354)
T 3a9g_A 177 EGR-PPA----DNPFP--NSPIWSYG-HRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATG------ 240 (354)
T ss_dssp TSC-CCT----TSSST--TCCEEEEC-CSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCS------
T ss_pred CCC-CCC----CCCCC--CCcEEEEc-cCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccC------
Confidence 321 100 00100 00111111 12346799999 6666555432 1 244332 221100 00000
Q ss_pred cccccCCCCCCccCCCCCCcccccCCeee-ecCCceeEeeeeeee------CCCCcEEEEeeCCCeEEEEEccCC-eee-
Q 012064 308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFF------GPKCEYVVSGSDCGRIFIWKKKGG-ELI- 378 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~------s~~g~~l~~g~~dg~v~iwd~~~~-~~~- 378 (471)
+.. .. ....+...+ ..+.. ...+.|+ ..+|+++++.-..+.|...++... +..
T Consensus 241 -------~~~------~~--~~~~p~~~~~~~~~a---p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~ 302 (354)
T 3a9g_A 241 -------KAG------RG--EFVDPVIDTGSETWA---PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK 302 (354)
T ss_dssp -------CCC------CT--TSCCCSEECTTCCCC---EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE
T ss_pred -------CCC------CC--CCcCCEeecCCCCcC---CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc
Confidence 000 00 000111222 12222 4556652 146777777666788988888753 322
Q ss_pred -EEe-cCCCcceEEEEEcCCCCEEEEee
Q 012064 379 -RVI-EADRHVVNCIEPHPHSTVLASSG 404 (471)
Q Consensus 379 -~~~-~~h~~~v~~~~~s~~~~~l~s~~ 404 (471)
..+ .+....+..+++.|||.++++..
T Consensus 303 ~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 303 ISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 233 22245789999999998776664
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.52 E-value=0.017 Score=50.24 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=80.8
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCc---eEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-----CeEEEEecccc
Q 012064 72 DGDILISGSDD-----RRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILER 138 (471)
Q Consensus 72 ~g~~l~s~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 138 (471)
++++++.|+.+ ..+.+||..+++ -...-.......-.++.. . +++.++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 56777777754 468899988765 221111111111122222 2 67777777654 35788888776
Q ss_pred CcceeeEeeceeeeEEEEEEccCCCcEEEEEecC-----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcC
Q 012064 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (471)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (471)
+......+......-..+.+ ++ ++++.|+.+ ..+..||+.+.+....-.. .. .......+.+
T Consensus 139 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~-----~r~~~~~~~~-- 205 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---AT-----KRSGAGVALL-- 205 (301)
T ss_dssp EEEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SS-----CCBSCEEEEE--
T ss_pred eEEECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCC---Cc-----ccccceEEEE--
Confidence 65443222211111112222 44 677777764 4688999888765433111 10 0011122222
Q ss_pred CCCceEEEEeCC-----CeEEEEEcCCCccC
Q 012064 214 RNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (471)
Q Consensus 214 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 239 (471)
+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 206 ~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 206 N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp T-TEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred C-CEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 2 5677777754 46899999887654
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.42 E-value=0.061 Score=47.94 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=41.8
Q ss_pred eeEEEEEcCC------CCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEE
Q 012064 205 NLNAIAIDPR------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (471)
Q Consensus 205 ~v~~~~~~p~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (471)
....++|... .+.++++....+.|...++...+.... ..+.......+..+++.|||.++++
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~------------~~~~~~~~~rp~~v~~~pdG~lyv~ 339 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTED------------GRILTDRGQRIRDVRTGPDGYLYVL 339 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE------------EEESGGGCCCEEEEEECTTSCEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeee------------EEcccCCCCceeEEEECCCCcEEEE
Confidence 4567777642 256777766778888888765432111 0111122346889999999987665
Q ss_pred eeCCcEEEEe
Q 012064 279 YNDEFIYLFT 288 (471)
Q Consensus 279 ~~~~~i~i~d 288 (471)
.....=+||.
T Consensus 340 td~~~g~I~r 349 (353)
T 2g8s_A 340 TDESSGELLK 349 (353)
T ss_dssp ECSTTEEEEE
T ss_pred EeCCCCEEEE
Confidence 4433334443
No 310
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.35 E-value=0.037 Score=57.34 Aligned_cols=271 Identities=11% Similarity=0.129 Sum_probs=149.8
Q ss_pred CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEcc
Q 012064 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (471)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (471)
...+|.|-|+.++..+.+....-.+ .-.+| ..+.++.-. ..++.|+|+++........+ ..+|.--.|-.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~Ads----AIMnP--~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis 115 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISADS----AIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS 115 (1630)
T ss_pred CCceEEEEECCCCCCcccccccchh----hccCC--CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecC
Confidence 3447889999887654333222222 33577 666665544 67999999988877665333 34566667765
Q ss_pred CCCcEEEEEecCCeEEEEeccCC-ccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEE-EEe------CCCeEEEEE
Q 012064 161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAG------SDEYTRLYD 232 (471)
Q Consensus 161 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~------~dg~i~i~d 232 (471)
.. .++..+ +..|+.|++... .+.+.+..+... ....|..-..+++. ++++ +|- -.|.+.+|.
T Consensus 116 ~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L------~~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred CC--eeEEEc-CCeEEEeccCCCCccHHHHhcchhc------ccCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeee
Confidence 54 233333 357999999753 333333322211 23467777888884 5544 332 447888998
Q ss_pred cCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEc--C-CCCeEEEee----CCcEEEEecCCC-CCCCCCCCCCcc
Q 012064 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS--D-QSELLVSYN----DEFIYLFTQDMG-LGPNPPPSSPVS 304 (471)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~~----~~~i~i~d~~~~-~~~~~~~~~~~~ 304 (471)
.+... .....+|.+....+... + ...+++.+. .+++++.++... ....++..
T Consensus 186 ~er~~----------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k---- 245 (1630)
T 1xi4_A 186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---- 245 (1630)
T ss_pred ccccc----------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc----
Confidence 87653 22233343333322222 1 122333332 257888888543 11111110
Q ss_pred ccccccccCCCCCCccCCCCCCcccccCCee-eec-CCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 305 TRSEASEMGSDHTSAASPSTANTDVRIAPQV-YKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
..... +.. .... ...++.. ++.-..+..-+.-|.|++||+.+|.++..-+
T Consensus 246 --------------------------k~~~~~~~~~~~~D-fpv~~~v-s~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 246 --------------------------KAVDVFFPPEAQND-FPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred --------------------------ccccccCCcccccC-cceEEEe-ccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 00010 111 1111 1345555 7777788888899999999999998876554
Q ss_pred CCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 383 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
-...+|...+-++...-++.....|.|.--.++....
T Consensus 298 is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 298 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 4445555555444434444445666666666665544
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.34 E-value=0.033 Score=48.43 Aligned_cols=66 Identities=6% Similarity=0.096 Sum_probs=39.1
Q ss_pred CCcEEEEeeCC-----CeEEEEEccCCeeeE--EecCCCcceEEEEEcCCCCEEEEeecCC-----cEEEecCCCCCCcc
Q 012064 354 KCEYVVSGSDC-----GRIFIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIES-----DIKILTPNAADRAT 421 (471)
Q Consensus 354 ~g~~l~~g~~d-----g~v~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~ 421 (471)
++++++.|+.+ ..+.+||..+.+-.. .+.........+. -++++++.|+.++ .+.+||+.+.+-..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 56777787764 368999987764332 2211111111222 2677778887653 48999998765433
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.34 E-value=0.054 Score=47.12 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=115.5
Q ss_pred CcEEEEecCC--CeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecCC----C
Q 012064 10 NKRARTSVDK--ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD----R 83 (471)
Q Consensus 10 ~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~d----~ 83 (471)
+.+++.|+.+ ..+.+||..+++...- ..+......-..+. -++.+++.|+.+ .
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~-------------------~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~ 70 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDI-------------------RCPFEKRRDAACVF--WDNVVYILGGSQLFPIK 70 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEEC-------------------CCCSCCCBSCEEEE--ETTEEEEECCBSSSBCC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecC-------------------CCCCcccceeEEEE--ECCEEEEEeCCCCCCcc
Confidence 4566677653 5788888887664420 00111111111222 266777788754 6
Q ss_pred eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC------CeEEEEeccccCcceeeEeeceeeeEEEEE
Q 012064 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (471)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 157 (471)
.+.+||..+++-...-.......-.+++ .- +++.++.|+.+ ..+.+||..+........+......-..+.
T Consensus 71 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 71 RMDCYNVVKDSWYSKLGPPTPRDSLAAC-AA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEEEETTTTEEEEEECCSSCCBSCEEE-EE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred eEEEEeCCCCeEEECCCCCccccceeEE-EE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 7889998876532221111111112222 22 67777887765 458888887765433211211111111122
Q ss_pred EccCCCcEEEEEec---------CCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC---
Q 012064 158 IEPGSPHVFYTCGE---------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--- 225 (471)
Q Consensus 158 ~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--- 225 (471)
+ ++ ++++.|+. -..+.+||+.+.+....-.. .. .... .+++.. + +.+++.|+.+
T Consensus 148 ~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~-----~r~~-~~~~~~-~-~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 148 A--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IE-----ARKN-HGLVFV-K-DKIFAVGGQNGLG 213 (306)
T ss_dssp E--TT-EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SS-----CCBS-CEEEEE-T-TEEEEECCEETTE
T ss_pred E--CC-EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cc-----hhhc-ceEEEE-C-CEEEEEeCCCCCC
Confidence 2 44 57777764 34588999988754433211 10 0011 122222 2 5677777643
Q ss_pred --CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-C-----CcEEEEecCCC
Q 012064 226 --EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-----EFIYLFTQDMG 292 (471)
Q Consensus 226 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-----~~i~i~d~~~~ 292 (471)
..+.+||+.+.+......+ . ........+.+ ++++++.++ + +.+.+||..+.
T Consensus 214 ~~~~~~~yd~~~~~W~~~~~~---------p----~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 214 GLDNVEYYDIKLNEWKMVSPM---------P----WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EBCCEEEEETTTTEEEECCCC---------S----CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCceEEEeeCCCCcEEECCCC---------C----CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3588999988765432111 0 01111222333 566666655 2 35888998764
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.32 E-value=0.21 Score=51.93 Aligned_cols=178 Identities=7% Similarity=0.056 Sum_probs=98.5
Q ss_pred eEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe----------CCCeEEEEEcCCCccCCCCC
Q 012064 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----------SDEYTRLYDIRKYKWDGSTD 243 (471)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~ 243 (471)
.|++.|..+.+.+..+...+. .....+..+.|..+...++++|+ ..|.|++|++...++..
T Consensus 808 ~i~lidp~t~~~i~~~~l~~n------E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l--- 878 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQN------EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT--- 878 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTT------EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE---
T ss_pred EEEEEeCCCCeEEEEEeCCCC------cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE---
Confidence 355666555554444333211 12223344445444356888886 35789999986433210
Q ss_pred CCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCC
Q 012064 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS 323 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
. .....++++++++-- +| +|+++-..++++|++...+.
T Consensus 879 ----------v-~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~----------------------------- 916 (1158)
T 3ei3_A 879 ----------V-AEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKE----------------------------- 916 (1158)
T ss_dssp ----------E-EEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSC-----------------------------
T ss_pred ----------E-EEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCce-----------------------------
Confidence 0 011124667777744 34 66667778999999865311
Q ss_pred CCCcccccCCe-eeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEE--ccCCeeeEEec-CCCcceEEEEEcCCCCE
Q 012064 324 TANTDVRIAPQ-VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK--KKGGELIRVIE-ADRHVVNCIEPHPHSTV 399 (471)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd--~~~~~~~~~~~-~h~~~v~~~~~s~~~~~ 399 (471)
++ ....... +..+.. ...+++++.|+.-..|.++. ...+++...-+ .+...++++.+-.++ .
T Consensus 917 ---------L~~~~~~~~~---i~~~~l-~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t 982 (1158)
T 3ei3_A 917 ---------LRTECNHYNN---IMALYL-KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-N 982 (1158)
T ss_dssp ---------EEEEEEECCC---SCEEEE-EEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-E
T ss_pred ---------EEEEeecccc---EEEEEE-eccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-c
Confidence 11 0000111 111121 23467888888777776654 43444432222 245578888887554 6
Q ss_pred EEEeecCCcEEEecCCC
Q 012064 400 LASSGIESDIKILTPNA 416 (471)
Q Consensus 400 l~s~~~dg~i~iw~~~~ 416 (471)
++.++.+|.+.+.....
T Consensus 983 ~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 983 FLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEETTSEEEEEEECT
T ss_pred EEEEcCCCcEEEEecCC
Confidence 67788999999987765
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.28 E-value=0.089 Score=46.83 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=60.2
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCce--EEEee--cCCCcceeEEEEecCCC---CeEEEEEeC-C-----C
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFH--SGHNDNVFQAKIMPFTD---DRSIVTCAA-D-----G 128 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~---~~~l~s~~~-d-----g 128 (471)
..-..++|.|+|+++++ ..+|.|.+++ +++. +..+. .........++|+| + +..|+.+.. . +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEecCCCCCcc
Confidence 34579999999996665 5569999998 4442 11111 11234678999999 7 455554433 2 5
Q ss_pred eEEEEeccccCccee-eE---ee---ceeeeEEEEEEccCCCcEEEEEe
Q 012064 129 QVRHAQILERGGVET-KL---LG---KHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 129 ~i~iwd~~~~~~~~~-~~---~~---~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
.|..++......... .. +. ........++|.|++ +++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence 677777654321111 11 21 111233689999999 5666543
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.26 E-value=0.061 Score=48.17 Aligned_cols=156 Identities=9% Similarity=0.080 Sum_probs=96.3
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceEEEeecCC---CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCc------
Q 012064 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG------ 140 (471)
Q Consensus 70 s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------ 140 (471)
..+|..++.+- ++.||.-++..+..-+.+...+ -..|..+..+| +|++|+..+. ..|.|-.+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp--sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST--SGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT--TSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC--CCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 34566666553 3678888877444323332221 23688899999 9999998874 5888888873321
Q ss_pred ----ceeeEeec------eeeeEEEEEEccCCCc--EEEEEecCCeEEEEeccCCccceeeeecccCCc-CcceeeeeeE
Q 012064 141 ----VETKLLGK------HQGRAHKLAIEPGSPH--VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLN 207 (471)
Q Consensus 141 ----~~~~~~~~------~~~~v~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 207 (471)
.+.+.+.- ...+|..+.|+|-+.+ .+++-..|+.|++||+........ ........ ........+.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 11111221 2467999999996543 689999999999999986332222 11111000 0001225788
Q ss_pred EEEEcCCCCceEEEEe--CCCeEEEE
Q 012064 208 AIAIDPRNANLFAVAG--SDEYTRLY 231 (471)
Q Consensus 208 ~~~~~p~~~~~l~~~~--~dg~i~i~ 231 (471)
+++|.++ +-.|...+ ++|.|+-.
T Consensus 184 S~~Fg~~-~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKD-GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTT-SSCEEEEECTTSCEEEEE
T ss_pred EEEEcCC-CcEEEEEecCCCCCEEEE
Confidence 9999996 66666644 77888654
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.23 E-value=0.078 Score=46.17 Aligned_cols=150 Identities=10% Similarity=0.084 Sum_probs=78.7
Q ss_pred CCCEEEEecC----C-----CeEEEEECCCCceEEEeecCCCc-ceeEEEEecCCCCeEEEEEeCC-----CeEEEEecc
Q 012064 72 DGDILISGSD----D-----RRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQIL 136 (471)
Q Consensus 72 ~g~~l~s~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 136 (471)
++.+++.|+. + ..+.+||..+.+-. .+...... .-.+++. - +++.++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS-PCAPMSVPRNRIGVGV-I--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE-ECCCCSSCCBTCEEEE-E--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEe-ECCCCCcCccccEEEE-E--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5677777775 2 35888998776532 22111111 1112222 2 67777777643 357888887
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC-----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+.+......+......-..+.+ ++ ++++.|+.+ ..+.+||+.+.+....-.. .. .......+.+
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~-----~r~~~~~~~~ 214 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NT-----IRSGAGVCVL 214 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SS-----CCBSCEEEEE
T ss_pred CCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CC-----ccccceEEEE
Confidence 6654332112211111122222 44 677777764 4588999887754432111 10 0011122222
Q ss_pred cCCCCceEEEEeCC-----CeEEEEEcCCCccC
Q 012064 212 DPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (471)
Q Consensus 212 ~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 239 (471)
+ +.+++.|+.+ ..+.+||+.+.+..
T Consensus 215 --~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 215 --H-NCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp --T-TEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred --C-CEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 3 5677777654 46899999887654
No 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.20 E-value=0.14 Score=47.37 Aligned_cols=110 Identities=13% Similarity=0.211 Sum_probs=59.8
Q ss_pred cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec------eeeeEEEEEEccC---CCcEEEEEec----
Q 012064 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------HQGRAHKLAIEPG---SPHVFYTCGE---- 171 (471)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~l~~~~~---- 171 (471)
..-..++|.| +|+.+++-...+.|++++..++.......+.. ....+..++|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3456999999 99877765544578888754443221111111 2456779999995 4355554432
Q ss_pred --------CCeEEEEeccCCc--c---ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEe
Q 012064 172 --------DGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (471)
Q Consensus 172 --------dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (471)
...|.-+++..+. . ...+.... .. .......|+|.||+ .+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--~~----~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SS----KDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CC----SSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC--CC----CCCCCCeEeECCCC-eEEEEEC
Confidence 2356666654321 1 11111111 11 11246899999995 5555433
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.19 E-value=0.056 Score=46.88 Aligned_cols=149 Identities=16% Similarity=0.156 Sum_probs=79.2
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-----CeEEEEeccccCcc
Q 012064 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGV 141 (471)
Q Consensus 72 ~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 141 (471)
+++.++.|+.+ ..+.+||..+.+-...-.......-.++.. . +++.++.|+.+ ..+.+||+.+....
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-A--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-E--CCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 57777777754 368899987765322111111111122222 2 67777877754 35888888776554
Q ss_pred eeeEeeceeeeEEEEEEccCCCcEEEEEecC-----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
....+.........+.+ ++ ++++.|+.+ ..+.+||+++.+....-... . .......+.+ + +
T Consensus 189 ~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~-----~r~~~~~~~~--~-~ 254 (301)
T 2vpj_A 189 NVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT---T-----PRCYVGATVL--R-G 254 (301)
T ss_dssp EECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS---S-----CCBSCEEEEE--T-T
T ss_pred eCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC---C-----cccceeEEEE--C-C
Confidence 32112111111122222 34 677888764 46899999887654332111 0 0011122222 3 5
Q ss_pred ceEEEEeCC-----CeEEEEEcCCCc
Q 012064 217 NLFAVAGSD-----EYTRLYDIRKYK 237 (471)
Q Consensus 217 ~~l~~~~~d-----g~i~i~d~~~~~ 237 (471)
.+++.|+.+ ..+.+||+++.+
T Consensus 255 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 255 RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 677777755 357888887765
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.18 E-value=0.11 Score=45.83 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=65.1
Q ss_pred EeccccccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEE--Ee---ecCCCcceeEEEEecCCC---CeEEEEE---
Q 012064 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL--SF---HSGHNDNVFQAKIMPFTD---DRSIVTC--- 124 (471)
Q Consensus 56 ~l~~h~~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~--~~---~~~~~~~v~~~~~~~~~~---~~~l~s~--- 124 (471)
.+...-...+.|+|.|||+++++--..|.|++++...++... .+ ..........++++| + +.+|+..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~ 103 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTS 103 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEEC
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEec
Confidence 333334567899999999988876658999999866555321 11 112345678999998 6 3444432
Q ss_pred eCCCeEEEEeccccC----cc--eeeEee----ceeeeEEEEEEccCCCcEEEEEe
Q 012064 125 AADGQVRHAQILERG----GV--ETKLLG----KHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 125 ~~dg~i~iwd~~~~~----~~--~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
..++.|.-|.+.... .. ....+. .....-..+.|.|++ +++++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence 234455556554421 10 111111 111234569999999 5666654
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.18 E-value=0.065 Score=43.25 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=82.2
Q ss_pred eeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCccc-CCCccceEEEEEcCCCCeEEEeeCCc
Q 012064 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSDQSELLVSYNDEF 283 (471)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (471)
.+..++|+|+ +.+.++ .+|.++-.+..+.+-.. .+.....+ ...-.....+.|.|+|.+.++ +++.
T Consensus 42 ~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~---------W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDN---------WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDK 108 (236)
T ss_dssp TCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCC---------HHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTE
T ss_pred cceeEEECCC-ccEEEE--eCCeEEEECCCCCCccc---------ccccccEecccccccceEEEECCCCCEEEe-CCCE
Confidence 5679999996 666655 67777666654422100 00000000 001112478899999988888 7888
Q ss_pred EEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeC
Q 012064 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (471)
Q Consensus 284 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~ 363 (471)
|+-++..+..... .......-+......+..+.+ +|+|.+.+..
T Consensus 109 iyr~~pP~~~~~~---------------------------------Wl~~a~~vg~~gw~~~~~lff-~p~G~Lyav~-- 152 (236)
T 1tl2_A 109 LYKASPPQSDTDN---------------------------------WIARATEVGSGGWSGFKFLFF-HPNGYLYAVH-- 152 (236)
T ss_dssp EEEESCCCSTTCC---------------------------------HHHHSEEEECSSGGGEEEEEE-CTTSCEEEEE--
T ss_pred EEEeCCCcCCCCc---------------------------------eeccccEeccCCCCceEEEEE-CCCceEEEEe--
Confidence 8877753311000 000011212222223677777 9999877766
Q ss_pred CCeEEEEEccCCe------eeEEec-CCCcceEEEEEcCCCCEEEEeecCCcEE
Q 012064 364 CGRIFIWKKKGGE------LIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIK 410 (471)
Q Consensus 364 dg~v~iwd~~~~~------~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~ 410 (471)
|+.++-....++. ....+- .....-..+.|.|++.+.+.. ++.++
T Consensus 153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 153 GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 7775433222111 011111 223345567799999877766 67444
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.14 E-value=0.069 Score=47.86 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=78.5
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCc------------eEEEeecC-----CCcceeEEEEecCC-CCeEEEEE
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER------------VKLSFHSG-----HNDNVFQAKIMPFT-DDRSIVTC 124 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~s~ 124 (471)
.|..+..||+|++||..+.. .|.|-.+..+. ..+.+.-+ ...+|..+.|+|.. .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 57889999999999988764 78888876321 11223212 25679999999953 35689999
Q ss_pred eCCCeEEEEeccccCcceeeEee---------ceeeeEEEEEEccCCCcEEEEEe--cCCeEEEEe
Q 012064 125 AADGQVRHAQILERGGVETKLLG---------KHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFD 179 (471)
Q Consensus 125 ~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd 179 (471)
..|+.|++||+......+. .+. .....|.+++|.+++ -.|+..+ ++|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEEEC
Confidence 9999999999986332222 222 122568899999876 4556644 778887654
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.13 E-value=0.096 Score=45.76 Aligned_cols=189 Identities=12% Similarity=0.053 Sum_probs=96.3
Q ss_pred cEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEecC-----C---
Q 012064 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-----D--- 82 (471)
Q Consensus 11 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~~~-----d--- 82 (471)
.+++.|+ ..+.+||..+++... ..+..............+++.++.|+. .
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~--------------------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 63 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYC--------------------ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKED 63 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEE--------------------EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSS
T ss_pred EEEEEcC--CceEEECCCCCeEec--------------------CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCcc
Confidence 3455666 578999999776531 111111111222233457778888873 1
Q ss_pred ---CeEEEEECCCCceEEEeec-CCCcceeEEEEecCCCCeEEEEEeCC--------CeEEEEeccccCcceeeEeecee
Q 012064 83 ---RRVILWDWKTERVKLSFHS-GHNDNVFQAKIMPFTDDRSIVTCAAD--------GQVRHAQILERGGVETKLLGKHQ 150 (471)
Q Consensus 83 ---~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~ 150 (471)
..+.+||..+++-. .+.. .....-.+++.. ++..++.|+.+ ..+.+||..+.+......+....
T Consensus 64 ~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 139 (315)
T 4asc_A 64 PMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV 139 (315)
T ss_dssp CEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred ccccceEEecCCCCeEE-ECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc
Confidence 13778888776531 2211 111111122222 66777777632 35888888776543321122111
Q ss_pred eeEEEEEEccCCCcEEEEEec-C-----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC
Q 012064 151 GRAHKLAIEPGSPHVFYTCGE-D-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (471)
..-. ++. .++ ++++.|+. + ..+.+||+.+.+-...-.. .. ......++.+ + +.+++.|+.
T Consensus 140 ~~~~-~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~-----~r~~~~~~~~--~-~~iyv~GG~ 205 (315)
T 4asc_A 140 YGHT-VLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QT-----ARSLFGATVH--D-GRIIVAAGV 205 (315)
T ss_dssp BSCE-EEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SS-----CCBSCEEEEE--T-TEEEEEEEE
T ss_pred ccee-EEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CC-----chhceEEEEE--C-CEEEEEecc
Confidence 1111 122 244 57777776 2 4688999888754432211 10 0001122222 3 567777775
Q ss_pred CC-----eEEEEEcCCCccC
Q 012064 225 DE-----YTRLYDIRKYKWD 239 (471)
Q Consensus 225 dg-----~i~i~d~~~~~~~ 239 (471)
++ .+.+||+.+.+..
T Consensus 206 ~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 206 TDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp CSSSEEEEEEEEETTTTEEE
T ss_pred CCCCccceEEEEECCCCeEE
Confidence 54 5889999887654
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.12 E-value=0.063 Score=46.69 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=79.2
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC---------CCeEEEEecc
Q 012064 72 DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQIL 136 (471)
Q Consensus 72 ~g~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~ 136 (471)
++++++.|+.+ ..+.+||..+.+-...-.......-.++.. - +++.++.|+. ...+.+||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-A--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-E--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 67777888765 468899988765322110111111122222 2 6777777764 2457888887
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC-----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+........+......-..+.+ ++ ++++.|+.+ ..+.+||+++.+....-... . ......++.+
T Consensus 178 ~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~-----~r~~~~~~~~ 246 (306)
T 3ii7_A 178 TETWTELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP---W-----KGVTVKCAAV 246 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCS---C-----CBSCCEEEEE
T ss_pred CCeEEECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC---C-----CccceeEEEE
Confidence 7655432212111111112222 44 677777754 46889999887544331111 0 1111222333
Q ss_pred cCCCCceEEEEeCC-----CeEEEEEcCCCcc
Q 012064 212 DPRNANLFAVAGSD-----EYTRLYDIRKYKW 238 (471)
Q Consensus 212 ~p~~~~~l~~~~~d-----g~i~i~d~~~~~~ 238 (471)
+ +.+++.|+.+ ..+..||+.+.+.
T Consensus 247 --~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 247 --G-SIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp --T-TEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred --C-CEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 3 5677788744 4688888887653
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.11 E-value=0.061 Score=47.03 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=53.3
Q ss_pred EEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEec----C-------CeEEEEeccCCcccee
Q 012064 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE----D-------GLVQHFDLRTGAATEL 188 (471)
Q Consensus 120 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~ 188 (471)
.++.|+ ..+..||..+++... ..+..............++ .+++.|+. + ..+..||+.+.+....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 468889988776543 1122111111222223345 57777774 1 1277888887764322
Q ss_pred eeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCC--------CeEEEEEcCCCccC
Q 012064 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIRKYKWD 239 (471)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~ 239 (471)
-. .+. .........+ + +.+++.|+.+ ..+.+||..+.+..
T Consensus 83 ~~---~p~-----~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~ 130 (315)
T 4asc_A 83 PP---LPS-----PRCLFGLGEA--L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130 (315)
T ss_dssp CC---BSS-----CEESCEEEEE--T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEE
T ss_pred CC---CCc-----chhceeEEEE--C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEe
Confidence 11 110 1111122222 2 5677777632 35889999887643
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.09 E-value=0.13 Score=45.24 Aligned_cols=260 Identities=15% Similarity=0.152 Sum_probs=128.3
Q ss_pred CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeE----eeceeeeEEEEEEccC---CCcEEEEE--ecCCe
Q 012064 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL----LGKHQGRAHKLAIEPG---SPHVFYTC--GEDGL 174 (471)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~---~~~~l~~~--~~dg~ 174 (471)
-..-+.++|.| |+..+++-...|.|++++...+....... ..........++++|+ +..+.++- ..++.
T Consensus 31 L~~P~~ia~~p--dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLP--GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcC--CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34567999999 99877776658999998765443221111 1223456789999995 32444432 24456
Q ss_pred EEEEeccCCc--------cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeC-------------CCeEEEEEc
Q 012064 175 VQHFDLRTGA--------ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDI 233 (471)
Q Consensus 175 i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~ 233 (471)
|.-|.+..+. ....+...+. ... | ....|+|.|| +.+.++.+. .|.|.-++.
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~--~~~--H--~g~~l~fgpD-G~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK--GVI--H--NGGRIAFGPD-KMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECC--CSS--C--CCCCEEECTT-SCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCC--CCC--c--cCccccCCCC-CCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 6666665421 1111111111 111 2 3467999999 455555332 244444444
Q ss_pred CCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee--CCcEEEEecCCCCCCCCCCCCCccccccccc
Q 012064 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (471)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 311 (471)
... ... ..|+. .......++ .....++|+|+|.+.++-. ++.-.+.-+..+...-- + ....
T Consensus 182 dG~-ip~----~nPf~--~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGw----P-----~~~g 244 (347)
T 3das_A 182 DGE-PAP----GNPFP--GSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGW----P-----EAEG 244 (347)
T ss_dssp TSS-BCT----TCSST--TCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCT----T-----TCCS
T ss_pred CCC-ccC----CCCCC--CCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecC----C-----cccC
Confidence 321 000 01110 011112222 3356899999887666543 22222222222221100 0 0000
Q ss_pred cCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCee----eEEecCCCcc
Q 012064 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL----IRVIEADRHV 387 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~----~~~~~~h~~~ 387 (471)
.........++..+..+... ...+.|+ +|..+...-..+.|....+..... ...+.+..+.
T Consensus 245 -----------~~~~~~~~~P~~~~~~~~~a--p~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR 309 (347)
T 3das_A 245 -----------KGGGSGFHDPVAQWSTDEAS--PSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGR 309 (347)
T ss_dssp -----------SCCCTTCCCCSEEECTTTCC--EEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSC
T ss_pred -----------CCCCccccCCcEecCCCCCC--CcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCC
Confidence 00000111223333322211 5677773 456665555556677667765432 2334444568
Q ss_pred eEEEEEcCCCCEEEEee
Q 012064 388 VNCIEPHPHSTVLASSG 404 (471)
Q Consensus 388 v~~~~~s~~~~~l~s~~ 404 (471)
+..++..|||.++++.+
T Consensus 310 ~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 310 LRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEEETTEEEEEEC
T ss_pred ccEEEECCCCcEEEEEc
Confidence 99999999998776654
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.09 E-value=0.047 Score=44.05 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=64.7
Q ss_pred eeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEE
Q 012064 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (471)
Q Consensus 151 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (471)
..+..++|+|++ .+ ++. .+|.++-.+..+.....-+......... .-....++.|+|+ +.+.++ .||.|+-
T Consensus 41 ~~~~~laf~P~G-~L-YaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~---Gw~~F~a~~fD~~-G~LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGG-EL-YGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG---GWNQFQFLFFDPN-GYLYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTS-CE-EEE-ETTEEEEESCCCSTTCCHHHHCEEEECS---CGGGCSEEEECTT-SCEEEE--ETTEEEE
T ss_pred ccceeEEECCCc-cE-EEE-eCCeEEEECCCCCCcccccccccEeccc---ccccceEEEECCC-CCEEEe--CCCEEEE
Confidence 467799999988 44 444 7788777776553221111100000000 0011478999998 555555 5698887
Q ss_pred EEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEE
Q 012064 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (471)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (471)
++..+.....-. ..-..+-...-..+..+.+.|+|.+.+.. ++.++-
T Consensus 112 ~~pP~~~~~~Wl--------~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 112 ASPPQSDTDNWI--------ARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp ESCCCSTTCCHH--------HHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred eCCCcCCCCcee--------ccccEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 775432210000 00001111122568999999999988888 777543
No 327
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.06 E-value=0.15 Score=45.31 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=59.7
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eEEEee--cCCCcceeEEEEecCCC---CeEEEEEeC----C----
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSFH--SGHNDNVFQAKIMPFTD---DRSIVTCAA----D---- 127 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~v~~~~~~~~~~---~~~l~s~~~----d---- 127 (471)
.....++|.|+|+++++ ..+|.|++++ .+++ .+..+. .........++++| + +..|+.+.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEeccCCCCCcc
Confidence 45689999999986665 5569999997 4454 222211 11234678999999 7 455554432 2
Q ss_pred CeEEEEeccccC--cc-eeeE---ee-ceeeeEEEEEEccCCCcEEEEEe
Q 012064 128 GQVRHAQILERG--GV-ETKL---LG-KHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 128 g~i~iwd~~~~~--~~-~~~~---~~-~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
..|..|+..... .. .... +. ........++|.|++ +++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence 566677665431 10 0011 11 111234679999999 5666543
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.06 E-value=0.029 Score=48.75 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC-------CeEEEEeccccC
Q 012064 72 DGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQVRHAQILERG 139 (471)
Q Consensus 72 ~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~ 139 (471)
+++.++.|+.++ .+.+||..+.+-...-.......-.+++.. +++.++.|+.+ ..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 567777777553 578889877653221111111111222332 67777777643 357888887765
Q ss_pred cceeeEeeceeeeEEEEEEccCCCcEEEEEecC-----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCC
Q 012064 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (471)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (471)
......+.........+.+ ++ ++++.|+.+ ..+.+||+++.+....-... . .. . ....+.+ +
T Consensus 185 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~-~r----~--~~~~~~~--~ 251 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-M-CR----R--NAGVCAV--N 251 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-S-CC----B--SCEEEEE--T
T ss_pred EEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-C-cc----c--cCeEEEE--C
Confidence 5432112211111122222 34 677888765 46889999887654332111 0 00 1 1112222 3
Q ss_pred CCceEEEEeCCC-----eEEEEEcCCCcc
Q 012064 215 NANLFAVAGSDE-----YTRLYDIRKYKW 238 (471)
Q Consensus 215 ~~~~l~~~~~dg-----~i~i~d~~~~~~ 238 (471)
+.+++.|+.++ .+.+||+.+.+.
T Consensus 252 -~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 252 -GLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp -TEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred -CEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 56777777553 489999987764
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.02 E-value=0.16 Score=44.94 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=108.7
Q ss_pred cEEEEEEcCCCCEEEEec------------CCCeEEEEECCCC--ceEEEee-cC-----CCcceeEEEEecCCCCe-EE
Q 012064 63 CVNTVSFNTDGDILISGS------------DDRRVILWDWKTE--RVKLSFH-SG-----HNDNVFQAKIMPFTDDR-SI 121 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~------------~d~~i~iwd~~~~--~~~~~~~-~~-----~~~~v~~~~~~~~~~~~-~l 121 (471)
..-.++..|+|..+++++ .+|.|.++|.++. +. ..+. .+ ..-....+.+.+..++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344666788886666552 6899999998743 22 2221 22 12355666665511232 45
Q ss_pred EEE-eC--CCeEEEEeccccCccee--eEeec-eeeeEEEEEEccCCCcEEEEEe-----------------cCCeEEEE
Q 012064 122 VTC-AA--DGQVRHAQILERGGVET--KLLGK-HQGRAHKLAIEPGSPHVFYTCG-----------------EDGLVQHF 178 (471)
Q Consensus 122 ~s~-~~--dg~i~iwd~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~iw 178 (471)
+.+ .. +.++.+|++........ ..+.+ .-...+++.+.++| .+.++.. ..|.+.-+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 444 22 46888988876543322 11211 12357889999998 4544432 12445555
Q ss_pred eccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC-ccCCCCCCCCCCCcCCCCccc
Q 012064 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFGQPADYFCPPNLI 257 (471)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (471)
|. ++...... .-...+.++|+||+..+.++-+..+.|+.|++... ++.. ....
T Consensus 209 d~--~~~~~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~-------------~~~~ 262 (355)
T 3sre_A 209 SP--NDVRVVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP-------------LRVL 262 (355)
T ss_dssp CT--TCCEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE-------------EEEE
T ss_pred EC--CeEEEeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec-------------CEEE
Confidence 54 32221111 22346899999995455555567789999998642 1110 0111
Q ss_pred CCCccceEEEEEcC-CCCeEEEeeCC--cEEEEe
Q 012064 258 GDEQVGITGLAFSD-QSELLVSYNDE--FIYLFT 288 (471)
Q Consensus 258 ~~~~~~i~~~~~~~-~~~~l~~~~~~--~i~i~d 288 (471)
......-.++..+ +|++.+++..+ .+..|+
T Consensus 263 -~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 263 -SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp -ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred -eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 1134567889999 59887766533 444443
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.00 E-value=0.15 Score=44.34 Aligned_cols=151 Identities=11% Similarity=0.102 Sum_probs=78.1
Q ss_pred CCCCEEEEecCC----CeEEEEECCCCceEEEeec-CCCcceeEEEEecCCCCeEEEEEeC----C-----CeEEEEecc
Q 012064 71 TDGDILISGSDD----RRVILWDWKTERVKLSFHS-GHNDNVFQAKIMPFTDDRSIVTCAA----D-----GQVRHAQIL 136 (471)
Q Consensus 71 ~~g~~l~s~~~d----~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~----d-----g~i~iwd~~ 136 (471)
-++.+++.|+.+ ..+.+||..+++-. .+.. .....-.+++. . ++..++.|+. + ..+.+||+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWL-RLADLQVPRSGLAGCV-V--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEE-E--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEe-ECCCCCcccccceEEE-E--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 356777777742 36889998776532 2111 11111112222 2 6777777765 2 357888887
Q ss_pred ccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC-----CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
+.+......+......-..+.+ ++ ++++.|+.+ ..+.+||+.+.+....-... ... .....+.+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r------~~~~~~~~ 167 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRR------IGVGVAVL 167 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCC------BSCEEEEE
T ss_pred CCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--ccc------cceEEEEE
Confidence 6654332212211111122222 44 677777654 36888998877544322111 000 11122222
Q ss_pred cCCCCceEEEEeCC-----CeEEEEEcCCCccC
Q 012064 212 DPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (471)
Q Consensus 212 ~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 239 (471)
+ +.+++.|+.+ ..+..||+.+.+..
T Consensus 168 --~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 168 --N-RLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp --T-TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred --C-CEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 3 5677777654 45889999877654
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.82 E-value=0.16 Score=44.43 Aligned_cols=153 Identities=13% Similarity=0.187 Sum_probs=76.9
Q ss_pred EcCCCCEEEEecC----CC-------eEEEEECCCCceEEEeec-CCCcceeEEEEecCCCCeEEEEEeCC-------Ce
Q 012064 69 FNTDGDILISGSD----DR-------RVILWDWKTERVKLSFHS-GHNDNVFQAKIMPFTDDRSIVTCAAD-------GQ 129 (471)
Q Consensus 69 ~s~~g~~l~s~~~----d~-------~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d-------g~ 129 (471)
...++..++.|+. ++ .+.+||..+++-. .+.. .....-.+++.. ++..++.|+.+ ..
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV-GLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE-ECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE-ECCCCCccccccceEEE---CCEEEEEcCccCCCCcccce
Confidence 3457788888873 11 2777887766532 2211 111111222222 67777777753 25
Q ss_pred EEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecC------CeEEEEeccCCccceeeeecccCCcCcceee
Q 012064 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (471)
Q Consensus 130 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (471)
+.+||..+.+......+......- +++. .++ ++++.|+.+ ..+.+||+.+.+....-... ...
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r------ 197 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--TPR------ 197 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESC-EEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS--SCC------
T ss_pred EEEEeCCCCCEeECCCCCCccccc-EEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC--CCc------
Confidence 778888766544321111111111 1222 344 677777642 45899999887644332111 000
Q ss_pred eeeEEEEEcCCCCceEEEEeCC-----CeEEEEEcCCCccC
Q 012064 204 VNLNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWD 239 (471)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 239 (471)
....++.+ + +.+++.|+.+ ..+.+||+.+.+..
T Consensus 198 ~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 198 SMFGVAIH--K-GKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp BSCEEEEE--T-TEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ccceEEEE--C-CEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 01122222 2 4677777643 34778998877644
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.80 E-value=0.23 Score=43.36 Aligned_cols=147 Identities=12% Similarity=0.143 Sum_probs=72.2
Q ss_pred EEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC----CC-------eEEEEeccccCccee
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DG-------QVRHAQILERGGVET 143 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~ 143 (471)
.++.|+. .+..||..+++-...-............... ++..++.|+. ++ .+..+|..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4445553 4789998877643321111111112222233 6777777773 12 166778766554332
Q ss_pred eEeeceeeeEEEEEEccCCCcEEEEEecC-------CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
..+......-....+ ++ ++++.|+.+ ..+.+||+.+.+....-... . .... .+++. .+ +
T Consensus 94 ~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~-----~r~~-~~~~~-~~-~ 159 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP---I-----KVYG-HNVIS-HN-G 159 (318)
T ss_dssp SCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS---S-----CEES-CEEEE-ET-T
T ss_pred CCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC---C-----cccc-cEEEE-EC-C
Confidence 112111111111222 44 677888764 35788898877544322111 0 0011 12222 23 5
Q ss_pred ceEEEEeC------CCeEEEEEcCCCccC
Q 012064 217 NLFAVAGS------DEYTRLYDIRKYKWD 239 (471)
Q Consensus 217 ~~l~~~~~------dg~i~i~d~~~~~~~ 239 (471)
.+++.|+. -..+.+||+.+.+..
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 66676663 235899999887654
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.78 E-value=0.51 Score=47.05 Aligned_cols=296 Identities=10% Similarity=0.017 Sum_probs=153.5
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 141 (471)
..|.++...+++..|..|.. +-+..+|..+++.. .+.......|.++...+ ++...+ |..+ -+.+++..+....
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~~l~~~~i~~i~~d~--~g~lWi-gT~~-Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK-QTEAFHNNSIKSLALDG--NGDLLA-GTDN-GLYVYHNDTTPLQ 264 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE-EEEEEEEEEEEEEEECT--TCCEEE-EETT-EEEEECCTTSCCE
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE-eccCCCCCeEEEEEEcC--CCCEEE-EeCC-ceeEEecCCCcEE
Confidence 34888888877765444554 34888887766542 22111234577877765 665554 4444 4777876554322
Q ss_pred eeeEe-----eceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCC
Q 012064 142 ETKLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (471)
Q Consensus 142 ~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (471)
..... .-....|.++....++. +..|+..| +.++.. .. ....+...... .......|.++.-.+++
T Consensus 265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiGT~~G-l~~~~~-~~-~~~~~~~~~~~---~~~~~~~v~~i~~D~~g- 335 (758)
T 3ott_A 265 HIIHDSRNIQSLTNNIIWNIFADQEHN--IWLGTDYG-ISLSRY-NS-ALQFIPISQIT---GTGDGNQFYSLFRDSKG- 335 (758)
T ss_dssp EECCCTTCTTSCSCSCEEEEEECTTCC--EEEEESSS-EEEECC-CC--CEEEEHHHHS---CSCCCCBEEEEEECTTC-
T ss_pred EEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEEeCCc-cccccc-CC-ceeEEecccCC---CCCCCceEEEEEEcCCC-
Confidence 11000 01234588888887773 56677666 554432 21 11121111000 00022357888888773
Q ss_pred ceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCc-ccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCC
Q 012064 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (471)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~ 295 (471)
. |..|+.+ .+..++..+++.... ..+.... ...-....|.++.-.++|++.+.. ++.+..|+..++...
T Consensus 336 ~-lWiGt~~-Gl~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 336 F-YWFGGAN-GLIRFTDPAGERHDA-------IWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFI 405 (758)
T ss_dssp C-EEEEETT-EEEEESCTTSSCCCC-------EEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE
T ss_pred C-EEEeeCC-cceeeccccccccee-------EEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEE
Confidence 3 4445555 466776654321100 0000000 000113458889888888766554 668999997653110
Q ss_pred CCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeee--cCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEcc
Q 012064 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (471)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~ 373 (471)
. ..... +......|.++.. +++|++ ..|+..+-+.++|..
T Consensus 406 ~------------------------------------~~~~~~~~~~~~~~v~~i~~-d~~g~l-WigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 406 H------------------------------------YNIVDNTGTYNTNWTYYIFE-DTAGQL-WISTCLGGIFVVDKH 447 (758)
T ss_dssp E------------------------------------EEEECCC--CBSSSEEEEEE-CTTSEE-EEEESSSCEEEEEHH
T ss_pred E------------------------------------eecCCCcCCCCCceEEEEEE-cCCCCE-EEEECCCceEEEccc
Confidence 0 00000 0001112677776 777764 446655568888865
Q ss_pred CC-----eee---EEec---C-CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCc
Q 012064 374 GG-----ELI---RVIE---A-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (471)
Q Consensus 374 ~~-----~~~---~~~~---~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 420 (471)
+. ... ..+. + ....|.++...++|++.+.++..+-|..++..+++..
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 448 KLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp HHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred cccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 31 111 1111 1 1235889999999997764333455888888765543
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.51 E-value=0.18 Score=52.45 Aligned_cols=223 Identities=12% Similarity=0.078 Sum_probs=126.4
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (471)
..+|.|.|+..+..+.++... .-+.-.+|.. ++++.- ...++.+||+++....+..... .+|
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks~~~~-----------e~V 108 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHTMT-----------DDV 108 (1630)
T ss_pred CceEEEEECCCCCCccccccc-----chhhccCCCc-ceEEEe-cCCeEEEeehHHhhhhcccccC-----------CCc
Confidence 347889998887665432222 2334568877 444443 4789999999998877766532 245
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEee------
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN------ 280 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------ 280 (471)
.-=.|-.. +.|+..+ +..|+-|++.... .|.+.+....... ...|..-..+++.++++..+
T Consensus 109 vfWkWis~--~~l~lVT-~~aVyHW~~~~~s--------~P~k~fdR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 109 TFWKWISL--NTVALVT-DNAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred eEEEecCC--CeeEEEc-CCeEEEeccCCCC--------ccHHHHhcchhcc--cCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 55566654 3444443 4569999996522 2322222222222 46788888899999876433
Q ss_pred --CCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEE
Q 012064 281 --DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (471)
Q Consensus 281 --~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l 358 (471)
.|.+.+|..+.+ ..+.+.||.....-..+.=..+....+
T Consensus 176 ~v~G~mQLyS~er~---------------------------------------~sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 176 RVVGAMQLYSVDRK---------------------------------------VSQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred cccceeeeeecccc---------------------------------------cchhhhHhHhhhheeccCCCCCCceEE
Confidence 245788877643 233444544331100000001111222
Q ss_pred EEeeC---CCeEEEEEccCC---eeeE------EecC---CCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCC
Q 012064 359 VSGSD---CGRIFIWKKKGG---ELIR------VIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (471)
Q Consensus 359 ~~g~~---dg~v~iwd~~~~---~~~~------~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 419 (471)
+.+.. .+.++|-++... .... .+.. ..+-..++..|+.-..+...+.-|.|.++|+.++.+
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 22211 268888887432 1110 1111 123355677777777777788889999999998765
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.35 Score=42.35 Aligned_cols=202 Identities=10% Similarity=-0.046 Sum_probs=101.6
Q ss_pred CcEEEEecCCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccc-cccEEEEEE---cCCCCEEEEe-cCCCe
Q 012064 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVNTVSF---NTDGDILISG-SDDRR 84 (471)
Q Consensus 10 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~---s~~g~~l~s~-~~d~~ 84 (471)
+.+++.++.||.|.-.|.++|+..- +++.. ..++....- ..++..++.. ..||.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W---------------------~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~ 68 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIW---------------------SIEPENFQPLIEIQEPSRLETYETLIIEPFGDGN 68 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEE---------------------EECGGGSCCSEECCCSCTTTSSEEEEECCSTTTE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---------------------EecCCccCCcEEecCCccccCCcEEEEEECCCCE
Confidence 4578899999999999999998773 22211 011111100 0133444443 57999
Q ss_pred EEEEECCCCceEEEeecC---CCcceeEEEEecCC-------CCeEEEEEeCCCeEEEEeccccCcceeeEeeceeee--
Q 012064 85 VILWDWKTERVKLSFHSG---HNDNVFQAKIMPFT-------DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR-- 152 (471)
Q Consensus 85 i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 152 (471)
|..++..+|.....+... ...++.. .=.|.- .+..+++++.+|.+...|+.+++.+...........
T Consensus 69 l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 147 (339)
T 2be1_A 69 IYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFG 147 (339)
T ss_dssp EEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---
T ss_pred EEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccc
Confidence 999998888655444211 1111211 111111 567888999999999999998887654222111110
Q ss_pred ---EEEEEEc---c-CCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeee-EEEEEcCCCCceEEEEeC
Q 012064 153 ---AHKLAIE---P-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGS 224 (471)
Q Consensus 153 ---v~~~~~~---~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~ 224 (471)
..|.... . .....++.+..+..+.+.+ ++++ ...+......... ....+ ..-..+.+ +.+ +.++.
T Consensus 148 ~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~~~~~s~D-g~~-~~~~~ 220 (339)
T 2be1_A 148 SQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLALQNTFSKD-GMC-IAPFR 220 (339)
T ss_dssp -----------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHTTCSSCSS-SCC-EEEET
T ss_pred ccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccc---cccccccccccccC-CcE-EEECC
Confidence 0111110 0 1113567777777777777 4453 3222110000000 00000 00001123 334 44788
Q ss_pred CCeEEEEEcCCCccCC
Q 012064 225 DEYTRLYDIRKYKWDG 240 (471)
Q Consensus 225 dg~i~i~d~~~~~~~~ 240 (471)
||.|.-+|..+++...
T Consensus 221 dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 221 DKSLLASDLDFRIARW 236 (339)
T ss_dssp TTEEEEECSTTCCEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 8999999988776554
No 336
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.23 E-value=0.51 Score=40.71 Aligned_cols=202 Identities=12% Similarity=0.211 Sum_probs=111.9
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEee
Q 012064 68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG 147 (471)
Q Consensus 68 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 147 (471)
-.+|..+.+|--. ..++.|+|+++.+.+..+. ....|.-=+|- +.+.|+.... ..|.-|++..... +.+.+.
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWi---s~~~L~lVT~-taVyHWs~~~~s~-P~kvFd 144 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI---SLNTVALVTD-NAVYHWSMEGESQ-PVKMFD 144 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEEC---SSSEEEEEES-SEEEEEESSTTCC-CEEEEE
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEec---CCCeEEEEcC-CcEEEEcccCCCC-Cceeee
Confidence 3588888777655 5789999999998888773 23466555665 5666766663 4899999976333 223354
Q ss_pred cee----eeEEEEEEccCCCcEEEEEe------cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE--cCCC
Q 012064 148 KHQ----GRAHKLAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRN 215 (471)
Q Consensus 148 ~~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~ 215 (471)
.|. ..|..-..+++.+-++++|- -.|.+.+|..+.+.. +.+.. |......+.+ .+..
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG----------haa~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG----------HAASFAQFKMEGNAEE 213 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECC----------SEEEEEEECCTTCSSC
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceeee----------eeeeeEEEecCCCCCC
Confidence 443 56778888888854444442 236788888776532 22221 1111111111 1111
Q ss_pred CceEEEEeC---CCeEEEEEcCCCccCCCCCCCC-CCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEecC
Q 012064 216 ANLFAVAGS---DEYTRLYDIRKYKWDGSTDFGQ-PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (471)
Q Consensus 216 ~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~~ 290 (471)
..+++.+.. .+.+.+-++..... ....+.. ..+.+-|.. ....-..++..++.-..+..-+ .|.+++||++
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~-~~~~f~kk~vdi~fppe---a~~DFPVamqvs~kygviyviTK~G~ihlyDle 289 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPT-GNQPFPKKAVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 289 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCT-TCCCCCCEEEEECCCTT---CTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCC-CCCCcccccceeeCCcc---ccCCceEEEEecccCCEEEEEeCCcEEEEEEcc
Confidence 123333222 25788888854310 0101100 001111111 1123345677777655655555 7899999999
Q ss_pred CC
Q 012064 291 MG 292 (471)
Q Consensus 291 ~~ 292 (471)
++
T Consensus 290 Tg 291 (365)
T 2xzh_A 290 TG 291 (365)
T ss_dssp TC
T ss_pred cC
Confidence 86
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.16 E-value=0.56 Score=40.49 Aligned_cols=173 Identities=7% Similarity=0.004 Sum_probs=89.7
Q ss_pred cCCCCEEEEec--CCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCC--------------CeEEEE
Q 012064 70 NTDGDILISGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------------GQVRHA 133 (471)
Q Consensus 70 s~~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iw 133 (471)
+++|..+.... .++.|...+.+... ...+.. .. +--+++ ++++|+-+... ..|+..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~---~~--~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN---DT--AMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE---EE--EEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC---Cc--eeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 34666666543 35666666654333 344421 11 234577 88888877543 356666
Q ss_pred eccccCcceeeEeeceeeeEEEEEEccCCCcEEEEE---ecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC---GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
++...+... +.... +..|+++++.+.++- ..+..|+..++..... +.+.. + .+ .+
T Consensus 94 ~~dg~~~~~---l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~----------~--~~--~~ 151 (302)
T 3s25_A 94 KRNGHGSTV---LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKN----------H--YL--FT 151 (302)
T ss_dssp ETTSCCCEE---EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEES----------S--CC--CC
T ss_pred eCCCCcceE---eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeC----------C--Cc--eE
Confidence 665554322 22111 226677886655554 2345666667664433 22221 1 11 34
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCC---cEEEE
Q 012064 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE---FIYLF 287 (471)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~i~i~ 287 (471)
++|+++.+..+......|+..++..... ..+..+ .. ...+.|++.+|+-...+ .|..-
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~---------------~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~ 212 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSE---------------ALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHV 212 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEE---------------EEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEE
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCE---------------EEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEE
Confidence 5677544444544467788878765431 111111 11 12356888888766522 46666
Q ss_pred ecCC
Q 012064 288 TQDM 291 (471)
Q Consensus 288 d~~~ 291 (471)
++..
T Consensus 213 ~ldG 216 (302)
T 3s25_A 213 NINN 216 (302)
T ss_dssp CSSS
T ss_pred ECCC
Confidence 6654
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.91 E-value=0.85 Score=40.43 Aligned_cols=95 Identities=9% Similarity=0.036 Sum_probs=47.3
Q ss_pred CCCEEEEecCC-CeEEEEECCCCceEEEeecC-C--CcceeEEEEecCCCCeEEEEEeC-C---------CeEEEEeccc
Q 012064 72 DGDILISGSDD-RRVILWDWKTERVKLSFHSG-H--NDNVFQAKIMPFTDDRSIVTCAA-D---------GQVRHAQILE 137 (471)
Q Consensus 72 ~g~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~l~s~~~-d---------g~i~iwd~~~ 137 (471)
++++++.|+.+ ..+.+||..+.......... . ...-.+++.. ++..++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 66677777653 46888998642111221111 1 1111222322 6777777765 2 3688888877
Q ss_pred cCcceeeEee-ceeeeEEEEEEccCCCcEEEEEecC
Q 012064 138 RGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGED 172 (471)
Q Consensus 138 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d 172 (471)
.+........ .....-.++ . .++ ++++.|+.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~-~-~~~-~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTF-V-HNG-KAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEE-E-ETT-EEEEEECCC
T ss_pred CcEEECCCCCCcccccceEE-E-ECC-EEEEEeCcC
Confidence 6554322121 111111122 2 345 677888754
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.86 E-value=1.1 Score=41.33 Aligned_cols=106 Identities=15% Similarity=0.274 Sum_probs=61.9
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceE--EEeecC-----CCcceeEEEEecCCC---CeEEEEEeC-----
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSG-----HNDNVFQAKIMPFTD---DRSIVTCAA----- 126 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~-----~~~~v~~~~~~~~~~---~~~l~s~~~----- 126 (471)
...+.|+|.|+|+++++-...+.|++++..++... ..+... .......++|+| + +..|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEEEEeccccC
Confidence 35579999999998887655457888876555532 222111 245677999998 6 666665542
Q ss_pred --------CCeEEEEeccccCcc---eeeEe---e-ceeeeEEEEEEccCCCcEEEEEe
Q 012064 127 --------DGQVRHAQILERGGV---ETKLL---G-KHQGRAHKLAIEPGSPHVFYTCG 170 (471)
Q Consensus 127 --------dg~i~iwd~~~~~~~---~~~~~---~-~~~~~v~~~~~~~~~~~~l~~~~ 170 (471)
...|.-++....... ....+ . ........++|.|+| +++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 124555554322110 11111 1 112346889999999 5666654
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.85 E-value=0.59 Score=45.94 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=82.5
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCC--eEEEEeccccCccee
Q 012064 72 DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVET 143 (471)
Q Consensus 72 ~g~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 143 (471)
+++.++.||.+ ..+.+||..+.+-...-.......-.+++... ++..++.|+.++ .+.+||..+......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 77788888754 35788898775431111001111112333334 778888887654 688899877665432
Q ss_pred eE---eeceeeeEEEEEEccCCCcEEEEEec--C-----CeEEEEeccCCcc-----ceeeeecccCCcCcceeeeeeEE
Q 012064 144 KL---LGKHQGRAHKLAIEPGSPHVFYTCGE--D-----GLVQHFDLRTGAA-----TELFTCRPIDDRRNYMTVVNLNA 208 (471)
Q Consensus 144 ~~---~~~~~~~v~~~~~~~~~~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~ 208 (471)
.. .......-.++.+..+..++++.|+. + ..+..||+.+... -..+...+.... ....+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R------~~~~~ 602 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR------YGSQI 602 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC------BSCEE
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc------ccceE
Confidence 11 11111112234455552367788876 2 4688999988872 111111111111 11122
Q ss_pred EEEcCCCCceEEEEeC--------CCeEEEEEcCCCccC
Q 012064 209 IAIDPRNANLFAVAGS--------DEYTRLYDIRKYKWD 239 (471)
Q Consensus 209 ~~~~p~~~~~l~~~~~--------dg~i~i~d~~~~~~~ 239 (471)
+.+ .+ +.+++.|+. ...+.+||+.+.++.
T Consensus 603 ~~~-~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 603 KYI-TP-RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEE-ET-TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEe-CC-CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 222 32 467777764 345888888877643
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.83 E-value=0.25 Score=43.96 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=63.7
Q ss_pred CeEEEEECCCCceEEEeecCCCcce-eEEEEecCCCCeEEEEEeCC------CeEEEEec--cccCcceeeEeeceeeeE
Q 012064 83 RRVILWDWKTERVKLSFHSGHNDNV-FQAKIMPFTDDRSIVTCAAD------GQVRHAQI--LERGGVETKLLGKHQGRA 153 (471)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~d------g~i~iwd~--~~~~~~~~~~~~~~~~~v 153 (471)
..+.+||..+.+-...-.......- .+++.. +++.++.|+.+ ..+..+|+ .+........+.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 4789999887653221111111111 233333 67777776642 35666776 443332211111111111
Q ss_pred EEEEEccCCCcEEEEEecC----------------------CeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEE
Q 012064 154 HKLAIEPGSPHVFYTCGED----------------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (471)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (471)
...+...++ ++++.|+.+ ..+.+||+++.+....-... .. + ....++.+
T Consensus 245 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~-r------~~~~~~~~ 315 (357)
T 2uvk_A 245 GGFAGISND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QG-R------AYGVSLPW 315 (357)
T ss_dssp SCEEEEETT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SC-C------BSSEEEEE
T ss_pred cceEEEECC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CC-c------ccceeEEe
Confidence 111122244 677777743 25778999877655432211 10 0 01122222
Q ss_pred cCCCCceEEEEeCCC------eEEEEEcCCCccC
Q 012064 212 DPRNANLFAVAGSDE------YTRLYDIRKYKWD 239 (471)
Q Consensus 212 ~p~~~~~l~~~~~dg------~i~i~d~~~~~~~ 239 (471)
+ +.+++.|+.++ .+.++++++++..
T Consensus 316 --~-~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 316 --N-NSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp --T-TEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred --C-CEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 3 56777787543 3666788776643
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.19 Score=44.07 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=69.5
Q ss_pred CEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecC-CCCeEEEEE-eCCCeEEEEeccccCcceeeEeec--e
Q 012064 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTC-AADGQVRHAQILERGGVETKLLGK--H 149 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~--~ 149 (471)
.+++.++.||.|.-.|.++|+...++......++....-... .++..++.. ..||.+..++..++.......... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 467888999999999999999988884331122222111110 023334343 578999888877663322211111 0
Q ss_pred eeeEEE---EEE------ccCCCcEEEEEecCCeEEEEeccCCccceeeee
Q 012064 150 QGRAHK---LAI------EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (471)
Q Consensus 150 ~~~v~~---~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (471)
..++.. ..+ +.+ ..+++++.+|.+...|+++|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~--g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVED--EKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CC--EEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccC--CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 111111 001 122 3689999999999999999999888764
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.67 E-value=1 Score=41.96 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=64.3
Q ss_pred EEEecCCCeEEEEEcccCcccccc--ccc-eecc---cccceeeee---eeEEeccccccEEEEEEc---CCCCEEEEec
Q 012064 13 ARTSVDKALVDVWLRELGQLSTRN--FAL-RRRA---SEDLVLRLG---IYAKLDKHRGCVNTVSFN---TDGDILISGS 80 (471)
Q Consensus 13 l~~~~~dg~i~iw~~~~~~~~~~~--~~~-~~~~---~~~~~~~~~---~~~~l~~h~~~V~~~~~s---~~g~~l~s~~ 80 (471)
+.+|+..|.++|+-+.+++.+.+. |.+ ...| .++...-+. ....=..|.- .+++. .||++|..-.
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp---~~S~tdg~yDGrylfiNd 149 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHP---HISMTDGKYDGKYLFIND 149 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCC---EEEEETTEEEEEEEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCC---cccccCCeeeeEEEEEec
Confidence 789999999999999998888652 111 0000 000000000 0000011221 22222 2678888766
Q ss_pred C-CCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeC
Q 012064 81 D-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 81 ~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
. +..|-.-+++.-++..-+.......+..++|-..++..|++.+++
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence 4 567888888888775555456677888888862127788887765
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.51 E-value=1.6 Score=40.72 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=55.5
Q ss_pred EEEEecCCCeEEEEECCCCceEEEeecCC------------------------Cccee--EEEEec-CCCCeEEEEEeC-
Q 012064 75 ILISGSDDRRVILWDWKTERVKLSFHSGH------------------------NDNVF--QAKIMP-FTDDRSIVTCAA- 126 (471)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------------------~~~v~--~~~~~~-~~~~~~l~s~~~- 126 (471)
.|.||+..|.|+|+-+.+++.++.+.--. .+... .+++.- ..||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 36799999999999999999888772100 01111 122210 015677777663
Q ss_pred CCeEEEEeccccCcceeeEeeceeeeEEEEEEc--cCCCcEEEEEe
Q 012064 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE--PGSPHVFYTCG 170 (471)
Q Consensus 127 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~ 170 (471)
+.+|...+++..+..+...++ ....+.+++|- |+.. .++.++
T Consensus 152 n~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~-yv~~~~ 195 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTK-YVFANA 195 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCC-EEEEEE
T ss_pred CcceEEEECCcEeeceeEeCC-CCcCcccccccccCCcc-EEEecc
Confidence 567777777766654433222 34567777775 5554 344444
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.24 E-value=1.6 Score=42.92 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=79.7
Q ss_pred CCeEEEEEeCC----CeEEEEeccccCcceee-E-----eeceeeeEEEEEEcc-CCCcEEEEEecC------CeEEEEe
Q 012064 117 DDRSIVTCAAD----GQVRHAQILERGGVETK-L-----LGKHQGRAHKLAIEP-GSPHVFYTCGED------GLVQHFD 179 (471)
Q Consensus 117 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~iwd 179 (471)
++..++.|+.+ ..+.+||..++...... . ....... .+++..+ ++ ++++.||.+ ..+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTT-EEEEECCBSSTTCBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCC-EEEEEcCCCCCCCccccEEEEe
Confidence 66777777753 35788888777654422 1 1111111 2233333 55 677888754 3578889
Q ss_pred ccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCC--eEEEEEcCCCccCCCCCCCCCCCcCCCCccc
Q 012064 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (471)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (471)
+.+.+....-.... .. .-.+++...+ +.+++.|+.++ .+.+||..+.++......+ ..
T Consensus 475 ~~t~~W~~~~~~p~--------~R-~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g----------~~ 534 (695)
T 2zwa_A 475 MKTREWSMIKSLSH--------TR-FRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD----------EF 534 (695)
T ss_dssp TTTTEEEECCCCSB--------CC-BSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSS----------GG
T ss_pred CCCCcEEECCCCCC--------Cc-ccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCC----------CC
Confidence 88865433311110 00 1122333224 57778877654 6999999887654221100 00
Q ss_pred CCCccceEEEEEcCC-CCeEEEeeC--------CcEEEEecCCC
Q 012064 258 GDEQVGITGLAFSDQ-SELLVSYND--------EFIYLFTQDMG 292 (471)
Q Consensus 258 ~~~~~~i~~~~~~~~-~~~l~~~~~--------~~i~i~d~~~~ 292 (471)
.........+.+..+ +++++.|+. +.+..||+.+.
T Consensus 535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 011111233455554 566666542 24888998775
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.24 E-value=1.7 Score=39.29 Aligned_cols=203 Identities=12% Similarity=0.216 Sum_probs=113.1
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEe
Q 012064 67 VSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL 146 (471)
Q Consensus 67 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 146 (471)
.-.+|..+.+|--. ..++.|+|+++.+.+..+. ....|.-=+|- +.+.|+... +..|.-|++..... +.+.+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWi---s~~~l~lVT-~taVyHWsi~~~s~-P~kvF 142 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI---SLNTVALVT-DNAVYHWSMEGESQ-PVKMF 142 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEE---ETTEEEEEC-SSEEEEEESSSSCC-CEEEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEec---CCCeEEEEc-CCeeEEecccCCCC-chhhe
Confidence 34577777777654 5799999999998888773 23456666676 456666665 45899999976332 33335
Q ss_pred ecee----eeEEEEEEccCCCcEEEEEe------cCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEc--CC
Q 012064 147 GKHQ----GRAHKLAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID--PR 214 (471)
Q Consensus 147 ~~~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~ 214 (471)
..|. ..|.....+++.+-++++|- -.|.+.+|..+.+.. +.+.. |......+.+. +.
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG----------haa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG----------HAASFAQFKMEGNAE 211 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECC----------SEEEEEEEECTTCSS
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhee----------eeeeeEEEecCCCCC
Confidence 4443 56778888888854444432 247788888876542 22221 11111122111 11
Q ss_pred CCceEEEEeC---CCeEEEEEcCCCccCCCCCCCC-CCCcCCCCcccCCCccceEEEEEcCCCCeEEEee-CCcEEEEec
Q 012064 215 NANLFAVAGS---DEYTRLYDIRKYKWDGSTDFGQ-PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ 289 (471)
Q Consensus 215 ~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~d~ 289 (471)
...++..+.. .+.+.+-++..... ....+.. ..+.+-+. .....-..++..++.-..+..-+ .|.+++||+
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~-~~~~f~kk~vdv~fpp---e~~~DFPvamqvs~kygviyviTK~G~i~lyDl 287 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPT-GNQPFPKKAVDVFFPP---EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 287 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCT-TCCCCCCEEEECCCCT---TSTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCcc-CCCCccceeeeeeCCc---ccccCceeEEEecccCCEEEEEecCceEEEEec
Confidence 0123333322 37889988865310 0001100 00111111 11123345677777666665555 788999999
Q ss_pred CCC
Q 012064 290 DMG 292 (471)
Q Consensus 290 ~~~ 292 (471)
+++
T Consensus 288 eTg 290 (494)
T 1bpo_A 288 ETG 290 (494)
T ss_dssp TTC
T ss_pred ccc
Confidence 986
No 347
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=95.20 E-value=1.6 Score=38.85 Aligned_cols=192 Identities=12% Similarity=0.155 Sum_probs=98.9
Q ss_pred eEEEEeccCC--ccceeeeecccCCcCcceeeeeeEEEEEc---CC---CCceEEEEe-CCCeEEEEEcCCCccCCCCC-
Q 012064 174 LVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAID---PR---NANLFAVAG-SDEYTRLYDIRKYKWDGSTD- 243 (471)
Q Consensus 174 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~- 243 (471)
.|.+||++++ +.++.+........ ....+..++++ |. +..++..+. ..+.|.+||+.+++.-....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~----~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE----KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC----CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc----cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC
Confidence 4667899998 88877776432221 23457788877 22 123444333 56789999999875322110
Q ss_pred -CCCCCCcCCCCcccCCC----ccceEEEEEcCC----CCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCC
Q 012064 244 -FGQPADYFCPPNLIGDE----QVGITGLAFSDQ----SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (471)
Q Consensus 244 -~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~----~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
+. +... ......+. ...+..++++|+ ++.|....-..-++|.+.+......
T Consensus 200 ~~~-pd~~--~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~----------------- 259 (381)
T 3q6k_A 200 TFK-AERP--TKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQK----------------- 259 (381)
T ss_dssp GGS-CCSC--EEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSST-----------------
T ss_pred CCc-cccC--cceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCc-----------------
Confidence 00 0000 00011111 246889999998 7777766633344444433111000
Q ss_pred CCCCccCCCCCCcccccCCeeeecCCc-eeEeeeeeeeC-CCCcEEEEeeCCCeEEEEEccC-C---eeeEEec-C-CCc
Q 012064 315 DHTSAASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFG-PKCEYVVSGSDCGRIFIWKKKG-G---ELIRVIE-A-DRH 386 (471)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s-~~g~~l~~g~~dg~v~iwd~~~-~---~~~~~~~-~-h~~ 386 (471)
.....++. .|... ......+++ + .+|.++++--+...|..|+..+ . +....+. . .-.
T Consensus 260 -------------~~~~~v~~-~G~kg~~s~~~~~~~-D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~ 324 (381)
T 3q6k_A 260 -------------GGKLNPEL-LGNRGKYNDAIALAY-DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFV 324 (381)
T ss_dssp -------------TCCCCCEE-EEECCTTCCEEEEEE-CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCC
T ss_pred -------------chhhceEE-eeecCCCCCcceEEE-eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCcc
Confidence 00011111 12111 001223444 5 5777777777889999999865 1 1122221 1 223
Q ss_pred ceEEEEEcCCCCEEEEee
Q 012064 387 VVNCIEPHPHSTVLASSG 404 (471)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~ 404 (471)
.+..+.+.++|.+.+.++
T Consensus 325 ~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 325 FGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp SEEEEEECTTSCEEEEEC
T ss_pred ccCeEEECCCCeEEEEEC
Confidence 467788777777666654
No 348
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.09 E-value=3 Score=41.45 Aligned_cols=291 Identities=9% Similarity=-0.025 Sum_probs=152.3
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCC----CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccc
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 137 (471)
..|.++...++|.+.+ |..+| +..++..+++......... ...|.++...+ ++..|..+.. +-+..++..+
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT--TRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET--TTTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEEC--CCCEEEEEEC-CCCeEEcCCC
Confidence 4588888888887666 44444 7778877665422111111 22477887766 6665555554 4577788655
Q ss_pred cCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCc
Q 012064 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (471)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (471)
++.... .......|.++...+++. +..|+. +-+.+++..+++... +...... ........|.++..+.++
T Consensus 221 ~~~~~~--~~l~~~~i~~i~~d~~g~--lWigT~-~Gl~~~~~~~~~~~~-~~~~~~~--~~~l~~~~i~~i~~D~~g-- 290 (758)
T 3ott_A 221 GQIKQT--EAFHNNSIKSLALDGNGD--LLAGTD-NGLYVYHNDTTPLQH-IIHDSRN--IQSLTNNIIWNIFADQEH-- 290 (758)
T ss_dssp TEEEEE--EEEEEEEEEEEEECTTCC--EEEEET-TEEEEECCTTSCCEE-ECCCTTC--TTSCSCSCEEEEEECTTC--
T ss_pred CeEEec--cCCCCCeEEEEEEcCCCC--EEEEeC-CceeEEecCCCcEEE-EEcCCCC--cCcCCcCeEEEEEEcCCC--
Confidence 433221 111245688888887773 455664 468888887664322 2111000 000123458889888774
Q ss_pred eEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcc-cCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCCCCCCC
Q 012064 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (471)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~ 296 (471)
.|-.|+..| +.++... .... . ...... .......|.++.-.++|.+.+.. .+.+..++..++....
T Consensus 291 ~lWiGT~~G-l~~~~~~-~~~~-~---------~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~ 357 (758)
T 3ott_A 291 NIWLGTDYG-ISLSRYN-SALQ-F---------IPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHD 357 (758)
T ss_dssp CEEEEESSS-EEEECCC-C-CE-E---------EEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCC
T ss_pred CEEEEeCCc-ccccccC-Ccee-E---------EecccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecccccccce
Confidence 344455566 5444321 1100 0 000000 00113468888888888876655 4567777755421100
Q ss_pred CCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe
Q 012064 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (471)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~ 376 (471)
. .. ... ......+ ....|.++.- +.+|++-+ |+ ++-+..||..+++
T Consensus 358 ~-~~---------------------~~~-----~~~~~~l----~~~~v~~i~~-d~~g~lWi-gt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 358 A-IW---------------------YRM-----GDKTYPL----SHNRIRHIYE-DKEQQLWI-AT-DGSINRYDYATRQ 403 (758)
T ss_dssp C-EE---------------------ECT-----TCSSSCC----SCSCEEEEEE-CTTSCEEE-EE-TTEEEEEETTTTE
T ss_pred e-EE---------------------ecc-----CCcCCCC----CCCceEEEEE-CCCCCEEE-Ee-CCcHhhcCcCCCc
Confidence 0 00 000 0000000 0112777776 77777443 44 4568899987765
Q ss_pred eeEEe--cC----CCcceEEEEEcCCCCEEEEeecCCcEEEecCC
Q 012064 377 LIRVI--EA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (471)
Q Consensus 377 ~~~~~--~~----h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 415 (471)
...-. .. ....|.++...+++++.+ |+..+-|.+++..
T Consensus 404 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~ 447 (758)
T 3ott_A 404 FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKH 447 (758)
T ss_dssp EEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHH
T ss_pred EEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccc
Confidence 43221 11 123578888877777555 4445557777643
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.76 E-value=1.8 Score=37.28 Aligned_cols=178 Identities=9% Similarity=0.070 Sum_probs=95.4
Q ss_pred EEEcCCCCEEEEecCC--------------CeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEe--CCCeE
Q 012064 67 VSFNTDGDILISGSDD--------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQV 130 (471)
Q Consensus 67 ~~~s~~g~~l~s~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i 130 (471)
--++++|.+|+.+... ..|+..++..++. ..+ ... ....|++ ++++|+-.. .++.-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l-~~~----~~~~~s~--~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVL-DPD----PCIYASL--IGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEE-ECS----CEEEEEE--ETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEe-ecC----CccEEEE--eCCEEEEEeecCCCCc
Confidence 3457889888876543 4677778776653 233 221 1236788 888888765 34444
Q ss_pred EEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEE
Q 012064 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (471)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (471)
.|+.+......... +..+.. .+++++++.++.+......|...++..+.....+. . .. ...
T Consensus 130 ~Iy~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----------~--~~-~~~ 190 (302)
T 3s25_A 130 SLYRIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-----------C--NC-YKP 190 (302)
T ss_dssp EEEEEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-----------S--CE-EEE
T ss_pred eEEEEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-----------C--Cc-cce
Confidence 44444332222211 333322 45678887666665556788888887765443322 1 11 123
Q ss_pred EcCCCCceEEEEeCC-CeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeC---CcEEE
Q 012064 211 IDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYL 286 (471)
Q Consensus 211 ~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~i~i 286 (471)
++|+++.+..+...+ ..|..-++..... ..+.. ..+ ..|+|++++|..+.+ +.|..
T Consensus 191 ~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----------------~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~ 250 (302)
T 3s25_A 191 VVLDDTNVYYMDVNRDNAIVHVNINNPNP----------------VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCV 250 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEECSSSCCC----------------EECSC--SCE--EEEEEETTEEEEEECSSSCEEEE
T ss_pred eeecCCEEEEEEcCCCcEEEEEECCCCCe----------------EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEE
Confidence 558855444443333 3555555554331 11111 122 237888888876542 35666
Q ss_pred EecCC
Q 012064 287 FTQDM 291 (471)
Q Consensus 287 ~d~~~ 291 (471)
.+++.
T Consensus 251 ~~~DG 255 (302)
T 3s25_A 251 VKNDG 255 (302)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 66654
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.38 E-value=4.3 Score=41.46 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.5
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (471)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45778888888899999999999999999999987765
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.99 E-value=10 Score=33.93 Aligned_cols=164 Identities=10% Similarity=0.042 Sum_probs=76.2
Q ss_pred cccEEEEEEcC--CCCEEEEecCCC----eEEEEECCCCceEEEeecC-------------CCcceeEEEEecCCC-CeE
Q 012064 61 RGCVNTVSFNT--DGDILISGSDDR----RVILWDWKTERVKLSFHSG-------------HNDNVFQAKIMPFTD-DRS 120 (471)
Q Consensus 61 ~~~V~~~~~s~--~g~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~-~~~ 120 (471)
...|.+|++.| ++.+++.+ ..| .|... ...++.-..+... ....|.++++.|. + ...
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHA-SEPGT 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCT-TSTTC
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCC-CCCCE
Confidence 35699999998 55555544 333 34332 2333321222110 1125778888762 2 455
Q ss_pred EEEEeCCCeEEEEeccccCcceeeEee-------------------ceeeeEEEEEEccCCCcEEEEEecCCeEEEEecc
Q 012064 121 IVTCAADGQVRHAQILERGGVETKLLG-------------------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (471)
Q Consensus 121 l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 181 (471)
+..+...+.|... ..+...-.. +. .....+.++.+.|..+..++.+..++.|...+ .
T Consensus 131 l~~g~~~ggl~~S--~DgG~tW~~-~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRS--TDHGASWEP-VAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-D 206 (394)
T ss_dssp EEEEEETTEEEEE--SSTTSBCEE-CHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-S
T ss_pred EEEEecCCcEEEE--cCCCCCeEE-CcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-C
Confidence 6665555554433 222221111 11 01235788999885434456565555444432 1
Q ss_pred CCccceeeeec-ccCCcC--cceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 012064 182 TGAATELFTCR-PIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (471)
Q Consensus 182 ~~~~~~~~~~~-~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (471)
.++.-..+... .....+ .......+.+++++|.++..+..+...+ |...+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 22211111100 000000 0000135789999997556777776544 55444
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.10 E-value=18 Score=35.46 Aligned_cols=207 Identities=8% Similarity=-0.028 Sum_probs=101.9
Q ss_pred cEEEEE-EcCCCCEEEEe----cC-CCeEEEEECCCCceEEEeecC-CCc------ceeEEEEecCCCCeEEEEEe----
Q 012064 63 CVNTVS-FNTDGDILISG----SD-DRRVILWDWKTERVKLSFHSG-HND------NVFQAKIMPFTDDRSIVTCA---- 125 (471)
Q Consensus 63 ~V~~~~-~s~~g~~l~s~----~~-d~~i~iwd~~~~~~~~~~~~~-~~~------~v~~~~~~~~~~~~~l~s~~---- 125 (471)
....+. ++|++++++.+ |. -..++++|+.+++.+..-+.. -+. ....++|.. ++..+++..
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d--~~~~~~~~~~~~~ 207 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN--KDTIIFNLVLHKN 207 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE--TTEEEECCCCSTT
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC--CCEEEEEeCCCCC
Confidence 344555 89999887753 22 247999999998875321110 000 113448875 555555421
Q ss_pred ------CCCeEEEEeccccCcceeeEeeceeeeE-EEEEEccCCCc----EEEEEecC---CeEEEEeccCCcc-ceeee
Q 012064 126 ------ADGQVRHAQILERGGVETKLLGKHQGRA-HKLAIEPGSPH----VFYTCGED---GLVQHFDLRTGAA-TELFT 190 (471)
Q Consensus 126 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~l~~~~~d---g~i~iwd~~~~~~-~~~~~ 190 (471)
....++.|.+-+........+.+....+ .....++++.. ++++.+.+ ..+.+.|...... ...+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 1246888887665443333344333322 33445666643 34443322 3456666543211 11111
Q ss_pred ecccCCcCcceeeeeeEEEEEcCCCCceEEEE----------eCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCc-ccCC
Q 012064 191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA----------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGD 259 (471)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 259 (471)
. + .. ..+..+++ +.+++.. ...+.|...|+.+..... ........ +...
T Consensus 288 ~---~------~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~ 347 (711)
T 4hvt_A 288 M---P------SD---ATLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTE-------SDKTSLKILFTPT 347 (711)
T ss_dssp S---C------TT---CEEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCG-------GGCTTCEEEECCC
T ss_pred c---C------Cc---ceEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccc-------cccccceEEECCC
Confidence 1 0 00 11122333 3444422 246678888887642100 00000111 2233
Q ss_pred CccceEEEEEcCCCCeEEEee-CC--cEEEEecCCC
Q 012064 260 EQVGITGLAFSDQSELLVSYN-DE--FIYLFTQDMG 292 (471)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-~~--~i~i~d~~~~ 292 (471)
....+..+.|..+ .++++.. ++ .++++++.++
T Consensus 348 ~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 348 ANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp TTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETT
T ss_pred CCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCC
Confidence 4567888999876 4555554 44 4778876543
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.01 E-value=15 Score=31.12 Aligned_cols=230 Identities=14% Similarity=0.071 Sum_probs=118.1
Q ss_pred cceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCc
Q 012064 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184 (471)
Q Consensus 105 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 184 (471)
..|..++-.. ...++. . ||.+..|-......... .......|..++.... +.++. . ||.++.|-.....
T Consensus 24 ~~i~~ia~G~---~h~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 24 SGVDAIAGGY---FHGLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDG 92 (282)
T ss_dssp SSCCEEEECS---SEEEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTS
T ss_pred CCCcEEEeCC---CeEEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCC
Confidence 3577776542 333444 5 89999998655433221 1112235666666544 33444 4 8999999765433
Q ss_pred cceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccce
Q 012064 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI 264 (471)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (471)
...... . ....|..++.... ..++ -. +|.|+.|-........ .| . .....|
T Consensus 93 qlg~P~--~--------~~~~v~~ia~G~~--hs~a-l~-~G~v~~wG~n~~gqlg-----~~------~----~~~~~i 143 (282)
T 3qhy_B 93 QTTVPA--E--------ARSGVDAIAAGAW--ASYA-LK-DGKVIAWGDDSDGQTT-----VP------A----EAQSGV 143 (282)
T ss_dssp TTCCCG--G--------GSSSEEEEEEETT--EEEE-EE-TTEEEEEECCTTSTTS-----CC------G----GGGSSE
T ss_pred CCCCCc--c--------cCCCeEEEECcCC--EEEE-Ee-CCeEEEecCCCCCcCC-----CC------c----cCCCCe
Confidence 222100 0 1125777777654 3333 34 9999999876532211 01 0 112346
Q ss_pred EEEEEcCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCceeE
Q 012064 265 TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (471)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (471)
..++...+..+++ .++.++.|-......... +... .. .
T Consensus 144 ~~i~~G~~~~~~l--~~G~v~~wG~n~~gqlg~-----------------------------------p~~~---~~--~ 181 (282)
T 3qhy_B 144 TALDGGVYTALAV--KNGGVIAWGDNYFGQTTV-----------------------------------PAEA---QS--G 181 (282)
T ss_dssp EEEEECSSEEEEE--ETTEEEEEECCTTSTTSC-----------------------------------CGGG---GS--S
T ss_pred EEEEcccCEEEEE--ECCEEEEecCCCCCCCCC-----------------------------------ceec---CC--C
Confidence 6666554433333 378899997654211100 0000 01 1
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEecCCCcceEEEEEcCCCCEEEEeecCCcEEEecCCCCCCcccC
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP 423 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 423 (471)
+..++. ..+ ..++. +||.|+.|=....-.+..-......|..++......+.+ . ||.|+.|-.....+..++
T Consensus 182 v~~i~~-G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al-~--~g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 182 VDDVAG-GIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL-K--NGKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp EEEEEE-CSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE-E--TTEEEEESTTCCCCGGGS
T ss_pred eEEEEe-cCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE-E--CCEEEEecCCCCccccCC
Confidence 555554 333 23333 589999997543222211111123577777654433333 3 899999987765544443
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.82 E-value=21 Score=32.78 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=33.4
Q ss_pred ceeEEEEecCCCCe-EEEEEeCCCeEEEEeccccC-cceeeEe----e-----ceeeeEEEEEEccC
Q 012064 106 NVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERG-GVETKLL----G-----KHQGRAHKLAIEPG 161 (471)
Q Consensus 106 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~----~-----~~~~~v~~~~~~~~ 161 (471)
.-+.|+|.| ++. .++++...|.|++++..... ......+ . ........++|+|+
T Consensus 15 ~P~~~a~~p--dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSG--DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCS--SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECC--CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 446889999 885 45566778999999753221 1010001 1 11456789999996
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.51 E-value=27 Score=32.08 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=58.4
Q ss_pred ccEEEEEEcCCCC-EEEEecCCCeEEEEECCCC---ceEEEee----cC----CCcceeEEEEecCCC----CeEEEEEe
Q 012064 62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTE---RVKLSFH----SG----HNDNVFQAKIMPFTD----DRSIVTCA 125 (471)
Q Consensus 62 ~~V~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~---~~~~~~~----~~----~~~~v~~~~~~~~~~----~~~l~s~~ 125 (471)
..-+.|+|.|||. .|+.+...|.|++++.... ..+..+. .+ .......++|+| + +...++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P--~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP--NYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT--THHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC--CCcCCCEEEEEEe
Confidence 3457899999996 3444567899999975322 1222221 11 145678899998 5 34444322
Q ss_pred C--C----------CeEEEEecccc--C---c-ceeeEe----eceeeeEEEEEEccCCCcEEEEEecC
Q 012064 126 A--D----------GQVRHAQILER--G---G-VETKLL----GKHQGRAHKLAIEPGSPHVFYTCGED 172 (471)
Q Consensus 126 ~--d----------g~i~iwd~~~~--~---~-~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d 172 (471)
. + ..|.-|.+... . . .....+ .........|+|.||+ +++++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 2 1 13444555321 1 0 011111 1122345789999999 566665543
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.87 E-value=30 Score=30.80 Aligned_cols=209 Identities=15% Similarity=0.055 Sum_probs=89.9
Q ss_pred CEEEEecCCCeEEEEECCC-CceEEEe-ecCCCcceeEEEEecCCCCeEEEEEeCCC--eEEEEeccccCcceeeE----
Q 012064 74 DILISGSDDRRVILWDWKT-ERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVETKL---- 145 (471)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---- 145 (471)
..|..|...| +.+++... +..-... .......|.++++.|. +...+..+...| .-.||....+...-...
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~-~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPR-EPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSS-STTCEEEEEEC--CCEEEEEESSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCC-CCCeEEEEecCCCCCccEEEeCCCCCCceECCccc
Confidence 3566677767 55554332 2221111 0123457999999873 344455555444 01233332222111100
Q ss_pred -eec--------eeeeEEEEEEccCC-CcEEEEEecCCeEEEEeccCCccceeeeecc-cCCc--------Ccceeeeee
Q 012064 146 -LGK--------HQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRP-IDDR--------RNYMTVVNL 206 (471)
Q Consensus 146 -~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~--------~~~~~~~~v 206 (471)
+.. ....|.++++.|.+ +..+++++..+.|...+= .++.-..+.... .... .+......+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 110 11357889998742 345677766666655432 222111111000 0000 000122357
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCC-CCeEEEeeCCcEE
Q 012064 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIY 285 (471)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~ 285 (471)
.++.++|.+...+..+..++.|...+-........ ... ....+.+... ......+..+.++|+ ...|..+..+.|+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~-~~~-~~~~~~p~~~-~~~g~~~~~i~~~~~~~~~l~vg~~~gl~ 256 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPL-NRG-CAANFLPDPN-VEFGHDPHCVVQHPAAPDILYQQNHCGIY 256 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEEC-CTT-CCCTTSSSSS-SSSCBCEEEEEECSSSTTEEEEEETTEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceEC-CCC-ccccccCCCc-cccCcceeEEEECCCCCCEEEEEcCCeEE
Confidence 89999985445555565555554433222111100 000 0000000000 000135888999986 3456666666665
Q ss_pred EEe
Q 012064 286 LFT 288 (471)
Q Consensus 286 i~d 288 (471)
..+
T Consensus 257 ~s~ 259 (394)
T 3b7f_A 257 RMD 259 (394)
T ss_dssp EEE
T ss_pred EeC
Confidence 544
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.69 E-value=29 Score=35.46 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=31.7
Q ss_pred eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeee
Q 012064 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (471)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 191 (471)
.+.+++..++. .++++-+.|+++|+|++.+++++.....
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 45667777766 5788999999999999999998877654
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.97 E-value=3.6 Score=43.08 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=32.2
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (471)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34556667788899999999999999999999987775
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.61 E-value=49 Score=32.43 Aligned_cols=241 Identities=14% Similarity=0.165 Sum_probs=113.3
Q ss_pred CCCCCcEEEEec-----CCCeEEEEEcccCccccccccceecccccceeeeeeeEEeccccccEEEEEEcCCCCEEEEe-
Q 012064 6 NNNNNKRARTSV-----DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG- 79 (471)
Q Consensus 6 ~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~- 79 (471)
++|++++++.+- +-..++++|+++++.+...+.+....+. +. ......++|-.+..++++.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~--~~-----------~~~~~~~~W~d~~~~~~~~~ 203 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGK--LL-----------EGKFTYPTWINKDTIIFNLV 203 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCC--BC-----------CEETCCEEEEETTEEEECCC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCccccccccc--cc-----------ccccceeeEECCCEEEEEeC
Confidence 788988876542 3348999999999988533321000000 00 0011223554223333321
Q ss_pred ---------cCCCeEEEEECCCCce--EEEeecCCCcce-eEEEEecCCCCe-----EEEEEeCC---CeEEEEeccccC
Q 012064 80 ---------SDDRRVILWDWKTERV--KLSFHSGHNDNV-FQAKIMPFTDDR-----SIVTCAAD---GQVRHAQILERG 139 (471)
Q Consensus 80 ---------~~d~~i~iwd~~~~~~--~~~~~~~~~~~v-~~~~~~~~~~~~-----~l~s~~~d---g~i~iwd~~~~~ 139 (471)
+....|+.|.+-+... ...+ .+....+ .....++ +++ .+++.+.+ ..+.+.+.....
T Consensus 204 ~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~-~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 280 (711)
T 4hvt_A 204 LHKNEITSSLYPNSLYIWKRGESIEKAKKLF-EVPKEYIYVSAGKLL--SDTISSSLIFISANKDFYNYDNYILDTKYKN 280 (711)
T ss_dssp CSTTCBCTTSSBCEEEEEETTSCGGGCEEEE-ECCTTSCEEEEEESS--CTTTCSSEEEEEEESSSSCEEEEEEECSSSS
T ss_pred CCCCCcCcCCCCCEEEEEECCCChHHCeEEe-ccCCCceEEEEEEec--CCCceEEEEEEEEecccCceeEEEEcCCCCC
Confidence 2235788998765431 1222 2222232 2333444 554 24444322 345555544322
Q ss_pred cc-eeeEeeceeeeEEEEEEccCCCcEEEEE----------ecCCeEEEEeccCCcc-------ceeeeecccCCcCcce
Q 012064 140 GV-ETKLLGKHQGRAHKLAIEPGSPHVFYTC----------GEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYM 201 (471)
Q Consensus 140 ~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~ 201 (471)
.. ........ .. +..+.++ .+++.. ...+.|...|+.+... .+.+-...
T Consensus 281 ~~~~~l~~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 347 (711)
T 4hvt_A 281 LKLQKINMPSD-AT---LQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT-------- 347 (711)
T ss_dssp CEEEECCSCTT-CE---EEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC--------
T ss_pred CcceEeecCCc-ce---EeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC--------
Confidence 21 11111111 11 2234455 444422 1356788888876421 11111111
Q ss_pred eeeeeEEEEEcCCCCceEEEEeCCCe--EEEEEcCCCccCCCCCCCCCCCcCCCCc-ccCCCccceEEEEEcCCCC-eEE
Q 012064 202 TVVNLNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGDEQVGITGLAFSDQSE-LLV 277 (471)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~ 277 (471)
....+..+.+..+ .++++...++. +.++++.+++... .. +.....+.+......+++. +++
T Consensus 348 ~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~-------------~~~i~lp~~~~~~~~~~~~~~~~~~~ 412 (711)
T 4hvt_A 348 ANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTK-------------PVVLKLPYQNAIFGMSSYEEEEEALI 412 (711)
T ss_dssp TTEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECC-------------CEEECCCSTTCEEEEECCTTCSCEEE
T ss_pred CCCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEE-------------EeccCCCCCeEEEEEeecCcCCEEEE
Confidence 2335778888875 57777777775 5666665442100 01 0011123466666667765 444
Q ss_pred EeeC----CcEEEEecC
Q 012064 278 SYND----EFIYLFTQD 290 (471)
Q Consensus 278 ~~~~----~~i~i~d~~ 290 (471)
+.+. ..++.+|..
T Consensus 413 ~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 413 TIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECSSSCCEEEEECTT
T ss_pred EEecCCCCCEEEEEeCC
Confidence 4332 257888765
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=71.38 E-value=45 Score=28.07 Aligned_cols=183 Identities=14% Similarity=0.073 Sum_probs=96.2
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEeecCCCcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcce
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 142 (471)
.|..++...+...++ . ||.|..|-......+- +...-...|..++-.. ...+ .-. +|.+..|-........
T Consensus 64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~---~hs~-al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGA---WASY-ALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEET---TEEE-EEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcC---CEEE-EEe-CCeEEEecCCCCCcCC
Confidence 566666654433333 3 7888888654322111 1111234677776653 3333 334 8999999765433322
Q ss_pred eeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEE
Q 012064 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (471)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (471)
. .......|..++.-... .++ -. ||.++.|-............ ....|..++.... +.++.
T Consensus 135 ~--~~~~~~~i~~i~~G~~~--~~~-l~-~G~v~~wG~n~~gqlg~p~~----------~~~~v~~i~~G~~--hs~al- 195 (282)
T 3qhy_B 135 V--PAEAQSGVTALDGGVYT--ALA-VK-NGGVIAWGDNYFGQTTVPAE----------AQSGVDDVAGGIF--HSLAL- 195 (282)
T ss_dssp C--CGGGGSSEEEEEECSSE--EEE-EE-TTEEEEEECCTTSTTSCCGG----------GGSSEEEEEECSS--EEEEE-
T ss_pred C--CccCCCCeEEEEcccCE--EEE-EE-CCEEEEecCCCCCCCCCcee----------cCCCeEEEEecCC--EEEEE-
Confidence 1 11123456666655433 333 33 79999997654332211000 1235777777654 34444
Q ss_pred eCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
.+|.++.|-........ .|. . ....|..++-..+. .++.. ++.++.|-...
T Consensus 196 -~~G~v~~wG~n~~gqlg-----~p~------~----~~~~v~~i~~G~~h-~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 196 -KDGKVIAWGDNRYKQTT-----VPT------E----ALSGVSAIASGEWY-SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -ETTEEEEEECCTTSTTC-----CCG------G----GGSSCCEEEECSSC-EEEEE-TTEEEEESTTC
T ss_pred -ECCeEEEEECCCCCCCC-----CCc------c----cCCCceEEEcCCCE-EEEEE-CCEEEEecCCC
Confidence 59999999876543221 111 1 12246666655444 34444 88999997544
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=70.08 E-value=59 Score=28.86 Aligned_cols=118 Identities=13% Similarity=0.170 Sum_probs=67.5
Q ss_pred cccEEEEEEc---CC----CCEE-EEecCCCeEEEEECCCCceEEEee---cCC--------------CcceeEEEEecC
Q 012064 61 RGCVNTVSFN---TD----GDIL-ISGSDDRRVILWDWKTERVKLSFH---SGH--------------NDNVFQAKIMPF 115 (471)
Q Consensus 61 ~~~V~~~~~s---~~----g~~l-~s~~~d~~i~iwd~~~~~~~~~~~---~~~--------------~~~v~~~~~~~~ 115 (471)
...+..+++. |. +.+. ++-+..+-|.|+|+.+++.-+... ... ...+..++.+|
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp- 229 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD- 229 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC-
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecC-
Confidence 4567788877 22 2233 333346789999999887643331 000 23677888888
Q ss_pred CC----CeEEEEEeCCCeEEEEeccc-----cCcceeeEeecee---eeEEEEEEc-cCCCcEEEEEecCCeEEEEeccC
Q 012064 116 TD----DRSIVTCAADGQVRHAQILE-----RGGVETKLLGKHQ---GRAHKLAIE-PGSPHVFYTCGEDGLVQHFDLRT 182 (471)
Q Consensus 116 ~~----~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~ 182 (471)
+ ++.|.-..-.+. ++|.+.+ ..........+.. ..-..+++. .+| .++++--....|..|+..+
T Consensus 230 -~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 230 -RDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -CCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEETTS
T ss_pred -CcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeCCC
Confidence 6 677776655442 4444432 1111111122222 233456675 556 6777778889999999876
No 362
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.78 E-value=20 Score=34.10 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=41.2
Q ss_pred eeeeeeeCCCCcEEEEeeCC------------CeEEEEEccCCeeeEEecCCC-cceEEEEEcCCCCEEEEe
Q 012064 345 VKGVNFFGPKCEYVVSGSDC------------GRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTVLASS 403 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~d------------g~v~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~ 403 (471)
.-.|.| +|.|+++++-..+ ..+.+.+..+++....+.++. ..++.++|+||++.|...
T Consensus 478 PDNL~f-d~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEE-CTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEE-CCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 345677 9999976654322 346667777788777776654 579999999999977654
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.52 E-value=14 Score=35.79 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=29.7
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEEEECCCCceEEEe
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF 99 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (471)
..|.++.+ +..++++-+.|.++|+||+.+++++...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 45666655 4779999999999999999999987776
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=65.13 E-value=1.1e+02 Score=30.32 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=57.5
Q ss_pred CcceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEeec-------eeeeEEEEEEccCCCcEEEEEecCCe--
Q 012064 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-------HQGRAHKLAIEPGSPHVFYTCGEDGL-- 174 (471)
Q Consensus 104 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~-- 174 (471)
.+.|.+++++|. +...++.+...+.|...+ ++...-.. +.. ....+.++++.|.++..++++..+..
T Consensus 14 ~g~i~~i~~~p~-~~~~~~a~~~~ggv~rS~--DgG~tW~~-~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPK-TKDLLYARTDIGGAYRWD--AGTSKWIP-LNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSS-STTCEEEEESSSCEEEEE--TTTTEEEE-SCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCcEEEEEECCC-CCCEEEEEecCCCEEEec--CCCCCeeE-CccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 458999999983 345666666666554433 32221111 111 12468999999865455555543211
Q ss_pred --EEEEecc-CCccceeeeecccCCcCc-ceeeeeeEEEEEcCCCCceEEEEeCCCe
Q 012064 175 --VQHFDLR-TGAATELFTCRPIDDRRN-YMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (471)
Q Consensus 175 --i~iwd~~-~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (471)
-.||--. .++.-..... ... ... ......+..++++|.++..++.+...+.
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~-~~~-~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYES-PFP-MGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp SCCEEEEESSTTSEEEEEEC-SSC-CCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred cccEEEEECCCCCcceeccC-Ccc-cCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 2333322 3322222211 100 000 0001124568888875567777764443
No 365
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=60.76 E-value=37 Score=32.02 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.2
Q ss_pred eeeeeeeCCCCcEEEEeeC------------CCeEEEEEccCCeeeEEecCC-CcceEEEEEcCCCCEEEEe
Q 012064 345 VKGVNFFGPKCEYVVSGSD------------CGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASS 403 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~------------dg~v~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~ 403 (471)
...+.| +++|.+.++-.. ...|+.++..+++....+.+. ...++.++|+||++.|+.+
T Consensus 478 PDnL~f-d~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGF-DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEE-CTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEE-CCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 567777 999987773221 226777777778776666543 3579999999999977655
No 366
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=60.59 E-value=1.4e+02 Score=29.73 Aligned_cols=156 Identities=11% Similarity=0.119 Sum_probs=75.9
Q ss_pred cccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEeecCC-------CcceeEEEEecCCCCeEEEEEeCCCe---
Q 012064 61 RGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGH-------NDNVFQAKIMPFTDDRSIVTCAADGQ--- 129 (471)
Q Consensus 61 ~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~--- 129 (471)
.+.|.+++++|.. ..+..++..+.|...+ +.|+.=..+ ..+ ...+.++++.|. +.+.++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~-~~~~~~~~~~~~~i~~ia~dp~-~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPL-NDFIEAQDMNIMGTESIALDPN-NPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEES-CTTCCGGGGGGCSEEEEEEETT-EEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeEC-ccCCCcccccCCceeEEEECCC-CCCEEEEEeCccCCCc
Confidence 4689999999963 4455566666555544 334432222 221 246899999882 2344444432211
Q ss_pred -EEEEeccccCcceeeEeec-e-------eeeEEEEEEccCCCcEEEEEecCCeEEEEeccC-CccceeeeecccCCcCc
Q 012064 130 -VRHAQILERGGVETKLLGK-H-------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRN 199 (471)
Q Consensus 130 -i~iwd~~~~~~~~~~~~~~-~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 199 (471)
-.||.-.++...-...... . ...+..++++|..+..++.+...+.| |--.. ++.-...... .....
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~--~~~~~ 166 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSI--PDAFT 166 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTS--CCCCS
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccC--ccccC
Confidence 3445443333221111100 0 01245678887655566666644433 32222 2222211110 00000
Q ss_pred ceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 200 YMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
....+..+.++|.++..++.+..+
T Consensus 167 --~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 167 --NGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp --TTTCEEEEEECTTSTTCEEEEESS
T ss_pred --CCCCeEEEEECCCCCCEEEEEEcC
Confidence 113468899998756566666654
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.84 E-value=39 Score=32.12 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCEEEEecCC------------CeEEEEECCCCceEEEeecC-CCcceeEEEEecCCCCeEEEEE
Q 012064 63 CVNTVSFNTDGDILISGSDD------------RRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTC 124 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~ 124 (471)
..-.|.|+|.|.+++.-..+ ..+.+.+..+++. ..|+.+ ...+++.++|+| |++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~P~gaE~TG~~fsp--Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSP--DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECT--TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeCCCCccCcCeeECC--CCCEEEEE
Confidence 34668999999977653321 2456667667775 444444 456899999999 98887664
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=56.17 E-value=65 Score=30.41 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=42.1
Q ss_pred ccEEEEEEcCCCCEEE-EecC-----------CCeEEEEECCCCceEEEeecC-CCcceeEEEEecCCCCeEEEEEe
Q 012064 62 GCVNTVSFNTDGDILI-SGSD-----------DRRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCA 125 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~-s~~~-----------d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~ 125 (471)
.....|.|+++|.+.+ +-.. ...+..++..+++. ..+..+ ....++.++|+| |++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl~~P~~aEpnGiafSP--D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSP--DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECT--TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEEeCCCCccccCCEECC--CCCEEEEEE
Confidence 4567899999998777 4221 12566777767775 444343 346789999999 998887653
No 369
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=53.65 E-value=1.2e+02 Score=26.88 Aligned_cols=213 Identities=13% Similarity=0.111 Sum_probs=100.9
Q ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCC-c---------eEEEeecC-CCcceeEEEEecCCCCeEEEEEeCCCeEE
Q 012064 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTE-R---------VKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (471)
Q Consensus 63 ~V~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~---------~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 131 (471)
.+..++++.-..+.+.-..||.|..|-.... + ........ ....|..++- .....+....+|.|.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~----G~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA----GGAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE----CSSEEEEEETTSCEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe----CcCeEEEEeCCCeEE
Confidence 3455666655556666677888888854321 1 11111111 1224555544 345556667789999
Q ss_pred EEeccccCcc---------eeeEeec-eeeeEEEEEEccCCCcEEEEEecCCeEEEEeccCCccc------eeeeecccC
Q 012064 132 HAQILERGGV---------ETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT------ELFTCRPID 195 (471)
Q Consensus 132 iwd~~~~~~~---------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~ 195 (471)
.|-....... ....+.. ....|..++..... ...+....||.|+.|-....... .........
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 260 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence 9975432111 0000111 12345566554322 24566678899999964321111 000000000
Q ss_pred CcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccceEEEEEcCCCCe
Q 012064 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (471)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (471)
.. ....|..++... ...+.-..+|.|+.|-.........-. ......|..+.......|..++.... ..
T Consensus 261 ~~----~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~l~~~~v~~ia~G~~-h~ 329 (389)
T 3kci_A 261 SL----TGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGS---DDHVRRPRQVQGLQGKKVIAIATGSL-HC 329 (389)
T ss_dssp GG----TTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSS---CCCEEEEEECGGGTTCCEEEEEECSS-EE
T ss_pred cc----CCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCC---CccccCCeEeccCCCCCEEEEEeccC-eE
Confidence 00 112356666544 344445789999999875433222110 00111111111111234555554332 23
Q ss_pred EEEeeCCcEEEEecCC
Q 012064 276 LVSYNDEFIYLFTQDM 291 (471)
Q Consensus 276 l~~~~~~~i~i~d~~~ 291 (471)
++...++.++.|-...
T Consensus 330 ~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 330 VCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETTCCEEEEECCT
T ss_pred EEECCCCCEEEeeCCC
Confidence 5555678899997654
No 370
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=48.74 E-value=1.5e+02 Score=26.57 Aligned_cols=115 Identities=11% Similarity=0.011 Sum_probs=59.9
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc----------eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeE
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV----------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 175 (471)
.|..++- .+...+....||.|..|-....... ...........|..++... ...+....||.|
T Consensus 76 ~v~~va~----G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v 148 (423)
T 3mvd_K 76 DAVDISA----GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRV 148 (423)
T ss_dssp SEEEEEE----CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCE
T ss_pred CceEEee----CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeE
Confidence 4545443 4556666678999999965432110 0000111223565555543 234556789999
Q ss_pred EEEec--cC-Cccc-----eeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 012064 176 QHFDL--RT-GAAT-----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (471)
Q Consensus 176 ~iwd~--~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (471)
+.|-. .. ++.- ......... ....|..++... ...+.-..+|.|+.|-....
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~~~------~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~ 208 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPIDLM------EGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQ 208 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEESS------TTCCEEEEEECS---SEEEEEETTSCEEEEECCTT
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeEec------CCCcEEEEecCC---CeEEEEecCCeEEEeeCCcC
Confidence 99975 22 1110 000000000 122466666654 35555678999999976543
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.36 E-value=18 Score=37.88 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=29.7
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEe
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~ 381 (471)
+.+++. .++..++++-+.|+++|+|++.+++++.+.
T Consensus 240 ~vs~~~-~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEE-ETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeec-cCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445555 678899999999999999999999887653
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=39.35 E-value=1.9e+02 Score=24.99 Aligned_cols=170 Identities=13% Similarity=0.112 Sum_probs=85.7
Q ss_pred ccEEEEEEcCCCCEEEEecCCCeEEE---EECCCC------ceEEEeec-CCCcceeEEE-EecCCCCeEEEEEeCCCeE
Q 012064 62 GCVNTVSFNTDGDILISGSDDRRVIL---WDWKTE------RVKLSFHS-GHNDNVFQAK-IMPFTDDRSIVTCAADGQV 130 (471)
Q Consensus 62 ~~V~~~~~s~~g~~l~s~~~d~~i~i---wd~~~~------~~~~~~~~-~~~~~v~~~~-~~~~~~~~~l~s~~~dg~i 130 (471)
+.+..+........|+.-+..|.+.- |++... .++..+.. .....|..+. ...+.+..+++.++.+|.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 34444444444445555555665543 444322 22111111 1233454443 3322257899999999999
Q ss_pred EEEeccccCcc-----eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEecc--CCcccee-eeecccCCcCccee
Q 012064 131 RHAQILERGGV-----ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAATEL-FTCRPIDDRRNYMT 202 (471)
Q Consensus 131 ~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~-~~~~~~~~~~~~~~ 202 (471)
+--.+..-... ....+.. .+.+..+...... ..++..+..|.+..+... .-..... -......... .
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~---~ 196 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN---I 196 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC---T
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC---C
Confidence 98887653221 1112333 2344444443334 346777888888888765 2111000 0000000000 2
Q ss_pred eeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 012064 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (471)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (471)
...|.++...+. +..++..+..|.++.-.+....
T Consensus 197 ~d~Vv~~~~~~~-~~~ll~~T~~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 197 DDRLLSLNVVRE-GTYLLVATSGGYAKRTAIEEYP 230 (327)
T ss_dssp TCCEEEEEECCT-TCEEEEEETTSEEEEEEGGGSC
T ss_pred CCEEEEEEEECC-CCEEEEEeCCCcEEEEEHHHcc
Confidence 234555555544 4578888999999988876544
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.19 E-value=3.2e+02 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=28.6
Q ss_pred eeeeeeeCCCCcEEEEeeCCCeEEEEEccCCeeeEEec
Q 012064 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (471)
Q Consensus 345 i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~~~~~~~ 382 (471)
|.++.+ +..++++-+.|.++|+|++++++++....
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 555544 47799999999999999999999887654
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=32.46 E-value=2.6e+02 Score=24.63 Aligned_cols=172 Identities=9% Similarity=0.048 Sum_probs=81.1
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcc--------e-eeEeece-eeeEEEEEEccCCCcEEEEEecCCeE
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--------E-TKLLGKH-QGRAHKLAIEPGSPHVFYTCGEDGLV 175 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~-~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i 175 (471)
.+..++.+. .....+....||.|..|-....... . ...+... ...|..++... ...+....+|.|
T Consensus 106 ~~~~v~i~~--G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v 180 (389)
T 3kci_A 106 FIKKVAVNS--GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDL 180 (389)
T ss_dssp CEEEEEECT--TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCE
T ss_pred ceeEEEECc--CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeE
Confidence 344456655 5666677778999999965432111 0 0011111 12455555433 234566789999
Q ss_pred EEEeccCCcc------ceeeeecccCCcCcceeeeeeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCC
Q 012064 176 QHFDLRTGAA------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (471)
Q Consensus 176 ~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (471)
+.|-....-. ............ ....+..++.... ....+.-..+|.|+.|-.........-. ...
T Consensus 181 ~~wG~n~~GqLG~~~~~~~~~p~~v~~~----~~~~v~~ia~G~g-~~~t~~l~~~G~v~~wG~n~~GqLG~g~---~~~ 252 (389)
T 3kci_A 181 YTWGKGRYGRLGHSDSEDQLKPKLVEAL----QGHRVVDIACGSG-DAQTLCLTDDDTVWSWGDGDYGKLGRGG---SDG 252 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGG----TTSCEEEEEECCS-SCEEEEEETTTEEEEEECCGGGTTSSSS---CCC
T ss_pred EEeCCCCCCCcCCCCCcccccceEeccc----CCCeEEEEEEcCC-CcEEEEEccCCEEEEEeCCCCCCCCCCC---CCC
Confidence 9996533111 111111101000 1224566666432 2455566789999999765433221110 000
Q ss_pred cCCCCcccCCCccceEEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
...|..+.......|..++.-.+ ..++...++.++.|-...
T Consensus 253 ~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 253 CKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEEEECCG
T ss_pred ccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEEEeCCC
Confidence 01111111111223555554332 234445577898887543
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.15 E-value=2.4e+02 Score=24.02 Aligned_cols=253 Identities=8% Similarity=-0.016 Sum_probs=112.6
Q ss_pred CCeEEEEEeCCCeEEEEeccccCcc-------eeeEeeceeeeEEEEEEccCCCcEEEEEecCCeEEEEec---cCCccc
Q 012064 117 DDRSIVTCAADGQVRHAQILERGGV-------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL---RTGAAT 186 (471)
Q Consensus 117 ~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~~~~ 186 (471)
+...+++.+.+|.|+--.+.+-+.. ....+... +.+..+......+ .++..+..|.++-+.. +.....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~-~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD-HILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC-EEEEEECCCEEEEEEhhHCcCCCCC
Confidence 6678889999999987665432211 11112222 3333333333332 3566667777655543 322110
Q ss_pred e-eeeecccCCcCcceeeeeeEEEEEcC--CCCceEEEEeCCCeEEEEEcCCCccCCCCCCCCCCCcCCCCcccCCCccc
Q 012064 187 E-LFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (471)
Q Consensus 187 ~-~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
. -.......... ....|.++..-+ +...+++..+.+|.++--.+......... ......+. .. ..
T Consensus 80 a~G~~i~~~l~l~---~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~-------G~~~i~l~-~~-d~ 147 (307)
T 1zi0_A 80 ARGRPIVNLLPLE---QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA-------GKVAIKLV-DG-DE 147 (307)
T ss_dssp SCCEEGGGTSCCC---TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTT-------CEESSCCC-TT-CC
T ss_pred CCCeEhhhccCCC---CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccC-------CeEEEEEC-CC-CE
Confidence 0 00000000000 122344443311 12457888899999999887643321110 00001111 22 33
Q ss_pred eEEEEE-cCCCCeEEEeeCCcEEEEecCCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCcccccCCeeeecCCce
Q 012064 264 ITGLAF-SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (471)
Q Consensus 264 i~~~~~-~~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (471)
+..+.. ..+..+++..+.|.+..++...-..... .........+....
T Consensus 148 lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr-----------------------------~a~Gv~~i~L~~~d-- 196 (307)
T 1zi0_A 148 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-----------------------------NTTGVRGIRLGEGD-- 196 (307)
T ss_dssp EEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT-----------------------------TCCCEECCCCCTTC--
T ss_pred EEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCC-----------------------------CCCCeEeEEeCCCC--
Confidence 444443 4444555666678877777653110000 00011111122111
Q ss_pred eEeeeeeeeCCCCcEEEEeeCCCeEEEEEccCCe-------ee--EEecCCCcceEEEEEcCCCCEEEEeecCCcEEEec
Q 012064 343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-------LI--RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (471)
Q Consensus 343 ~~i~~~~~~s~~g~~l~~g~~dg~v~iwd~~~~~-------~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 413 (471)
.+.++.. -+++..++..++.|.++-.++.... -+ ..+....+.+..+....+..-++..+.+|.+.-.+
T Consensus 197 -~Vv~~~~-~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~ 274 (307)
T 1zi0_A 197 -KVVSLIV-PRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTR 274 (307)
T ss_dssp -CEEEEEC-CCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEE
T ss_pred -EEEEEEE-ecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEe
Confidence 2555544 3445678888999999888774321 11 11222224444443333334444555667666555
Q ss_pred CCC
Q 012064 414 PNA 416 (471)
Q Consensus 414 ~~~ 416 (471)
+..
T Consensus 275 ~~~ 277 (307)
T 1zi0_A 275 VSE 277 (307)
T ss_dssp GGG
T ss_pred ccc
Confidence 543
No 376
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=28.23 E-value=4.4e+02 Score=25.96 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=76.3
Q ss_pred cccccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEeecC-----------CCcceeEEEEecCCCCeEEEEEeC
Q 012064 59 KHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSG-----------HNDNVFQAKIMPFTDDRSIVTCAA 126 (471)
Q Consensus 59 ~h~~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~l~s~~~ 126 (471)
+-.+.|.+++++|.+ ..+..+...|.|...+ +.|+.=..+... ....+.++++.|...+..++..+.
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 346789999999976 4555555555544433 234332222111 124588999988322334443321
Q ss_pred ----CCeEEEEeccccCcceee-Eeece-----ee--eEEEEEEccCCCcEEEEEecCCeEEEEeccCCccceeeeeccc
Q 012064 127 ----DGQVRHAQILERGGVETK-LLGKH-----QG--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (471)
Q Consensus 127 ----dg~i~iwd~~~~~~~~~~-~~~~~-----~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (471)
.....||.-.++...-.. ..... .. ....++++|.++..+++++.++.|.. ....++.-..... .
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~--~ 173 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQ--L 173 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTT--S
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCcccccc--C
Confidence 112445554443322111 11100 01 11358888876556666665543331 2222222111110 0
Q ss_pred CCcCcceeeeeeEEEEEcCCCCceEEEEeCCC
Q 012064 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (471)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (471)
.. .......+..++++|.++..++.+..++
T Consensus 174 ~~--~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 174 PD--SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CC--CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cc--cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 00 0001124678899987656666666654
No 377
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=28.21 E-value=4.3e+02 Score=25.85 Aligned_cols=114 Identities=14% Similarity=0.045 Sum_probs=56.3
Q ss_pred ceeEEEEecCCCCeEEEEEeCCCeEEEEeccccCcceeeEee--c----eeeeEEEEEEccCCCcEEEEEecC-------
Q 012064 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG--K----HQGRAHKLAIEPGSPHVFYTCGED------- 172 (471)
Q Consensus 106 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~~l~~~~~d------- 172 (471)
.|..++++|. +...++.+...+.|...+ +....-..... . ....+.+++++|.++..++++...
T Consensus 24 ~i~~i~~~p~-~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 24 FMPGIVFNET-EKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp CCCEEEECSS-STTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred eeeEEEECCC-CCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 7999999993 334566666556544433 33222111111 1 124589999998654455554421
Q ss_pred CeEEEEeccC-Cccceeeeeccc-CC-cCcceeeeeeEEEEEcCCCCceEEEEeCC
Q 012064 173 GLVQHFDLRT-GAATELFTCRPI-DD-RRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (471)
Q Consensus 173 g~i~iwd~~~-~~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (471)
+...+|.-.. ++.-........ .. ..+ ...+..++++|.++..++.+...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g---~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPG---RSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTT---TTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCc---ccccceEEECCCCCCEEEEeecc
Confidence 1234454333 332222221100 00 000 01246789999877777777643
No 378
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.44 E-value=1.8e+02 Score=20.15 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=15.9
Q ss_pred EEEEEcCCCCeEEEeeCCcEEEEecCC
Q 012064 265 TGLAFSDQSELLVSYNDEFIYLFTQDM 291 (471)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~i~i~d~~~ 291 (471)
..+.+..+|.+++...++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 35677778877776544443 676543
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=23.28 E-value=5.3e+02 Score=25.21 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=56.8
Q ss_pred ccEEEEEEcCCC-CEEEEecCCCeEEEEECCCCceEEEeecCC-------CcceeEEEEecCCCCeEEEEEeCC------
Q 012064 62 GCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGH-------NDNVFQAKIMPFTDDRSIVTCAAD------ 127 (471)
Q Consensus 62 ~~V~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~d------ 127 (471)
+.|..++++|.. ..+..+...+.|..++ ..|+.=..+ ..+ ...|.++++.|...+..++..+..
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i-~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPL-LDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEEC-CTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEEC-cCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 389999999973 3454555555555554 234432222 221 245889999984223444443210
Q ss_pred CeEEEEeccccCcceeeEeecee--------eeEEEEEEccCCCcEEEEEecC
Q 012064 128 GQVRHAQILERGGVETKLLGKHQ--------GRAHKLAIEPGSPHVFYTCGED 172 (471)
Q Consensus 128 g~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~~~~~d 172 (471)
+...||.-.++...-........ ..+..++++|.++..++.+...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 12456665544332221111110 1246789998776667776643
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.55 E-value=2.8e+02 Score=25.68 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=35.9
Q ss_pred EEEEeeCCCeEEEEEc-cCC-------eeeEEecC--CCcceEEEEEcCCCCEEEEeecCCcEEE
Q 012064 357 YVVSGSDCGRIFIWKK-KGG-------ELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKI 411 (471)
Q Consensus 357 ~l~~g~~dg~v~iwd~-~~~-------~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~i 411 (471)
.++.|+.+|.|.=.-+ ..+ ..+.++.- ...+|..|.++++.++|..++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 5667899997653322 221 12233332 3568999999999999999988776665
No 381
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.46 E-value=2e+02 Score=26.57 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=40.1
Q ss_pred eEEEEEEccC----C-CcEEEEEecCCeEEEEecc-CCc-------cceeeeecccCCcCcceeeeeeEEEEEcCCCCce
Q 012064 152 RAHKLAIEPG----S-PHVFYTCGEDGLVQHFDLR-TGA-------ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (471)
Q Consensus 152 ~v~~~~~~~~----~-~~~l~~~~~dg~i~iwd~~-~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (471)
..++|+...- + -.+++.|+.+|.|.-.-+. .+. .+..+...+ ...+|..|.++++ ...
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~--------~~~pI~~m~l~~~-~~~ 475 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFR--------EPTTISAMELSTK-QQQ 475 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSS--------SCCCCCEEEEETT-TTE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecC--------CCCccceEEEcCC-CCE
Confidence 3566665431 2 2467788889887544332 211 111222111 2347899999998 678
Q ss_pred EEEEeCCCeEEE
Q 012064 219 FAVAGSDEYTRL 230 (471)
Q Consensus 219 l~~~~~dg~i~i 230 (471)
|++++.++.+++
T Consensus 476 Lyv~s~~~V~~v 487 (495)
T 1q47_A 476 LYIGSTAGVAQL 487 (495)
T ss_dssp EEEEBSSCEEEE
T ss_pred EEEEECCeEEEE
Confidence 888888776554
No 382
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=20.00 E-value=88 Score=14.93 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhee
Q 012064 444 MMMVVAVVAAAVVML 458 (471)
Q Consensus 444 ~~~~~~~~~~~~~~~ 458 (471)
+++++++. ++|+.|
T Consensus 9 lLIviav~-aaVlly 22 (26)
T 3j1r_A 9 LLILIAVA-AAVLLY 22 (26)
T ss_dssp HHHHHHHH-HHHHHH
T ss_pred HHHHHHHH-HHHHHH
Confidence 34445544 444444
Done!