Query 012066
Match_columns 471
No_of_seqs 243 out of 2067
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.3E-55 9.3E-60 430.0 48.4 418 36-456 12-435 (455)
2 PRK10189 MATE family multidrug 100.0 1E-49 2.3E-54 395.6 50.8 413 39-454 27-452 (478)
3 PRK00187 multidrug efflux prot 100.0 2.7E-49 5.8E-54 392.7 49.3 413 37-452 6-432 (464)
4 PRK09575 vmrA multidrug efflux 100.0 7.9E-49 1.7E-53 388.8 47.5 415 37-455 8-427 (453)
5 PRK10367 DNA-damage-inducible 100.0 1.5E-47 3.3E-52 376.6 47.9 411 37-455 5-422 (441)
6 PRK01766 multidrug efflux prot 100.0 2.2E-47 4.7E-52 380.3 48.7 423 34-459 5-437 (456)
7 TIGR00797 matE putative efflux 100.0 1.3E-36 2.8E-41 292.2 43.5 337 49-388 1-341 (342)
8 TIGR01695 mviN integral membra 100.0 2.7E-36 5.9E-41 305.1 46.1 408 43-459 2-423 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 2.9E-36 6.3E-41 303.9 41.9 409 44-461 2-431 (488)
10 KOG1347 Uncharacterized membra 100.0 1.2E-34 2.5E-39 282.7 32.4 408 34-442 21-428 (473)
11 PRK15099 O-antigen translocase 100.0 3.8E-33 8.2E-38 274.7 42.8 396 43-455 3-403 (416)
12 PF03023 MVIN: MviN-like prote 100.0 2E-28 4.3E-33 241.4 44.4 383 71-461 5-400 (451)
13 COG0728 MviN Uncharacterized m 100.0 4.6E-27 9.9E-32 227.5 47.0 407 41-452 7-425 (518)
14 PRK10459 colanic acid exporter 100.0 5E-27 1.1E-31 236.6 40.5 389 40-454 4-395 (492)
15 COG2244 RfbX Membrane protein 100.0 1.7E-24 3.6E-29 217.7 38.7 389 39-446 4-394 (480)
16 PRK00187 multidrug efflux prot 99.9 4E-20 8.8E-25 184.0 27.4 206 36-242 231-443 (464)
17 PRK01766 multidrug efflux prot 99.9 2.6E-19 5.5E-24 178.7 26.0 207 36-243 234-442 (456)
18 COG0534 NorM Na+-driven multid 99.8 5.3E-19 1.2E-23 174.5 26.4 208 34-243 234-443 (455)
19 PRK10189 MATE family multidrug 99.8 2.1E-18 4.6E-23 171.8 29.2 208 36-244 254-463 (478)
20 PRK09575 vmrA multidrug efflux 99.8 2.9E-18 6.2E-23 170.4 26.6 205 36-243 229-436 (453)
21 PRK10367 DNA-damage-inducible 99.8 1.1E-18 2.5E-23 172.0 23.0 194 257-452 5-200 (441)
22 TIGR01695 mviN integral membra 99.8 4.4E-17 9.5E-22 165.0 32.6 205 37-243 219-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 5.2E-16 1.1E-20 144.0 33.7 271 43-329 1-272 (273)
24 PF01554 MatE: MatE; InterPro 99.8 1.2E-18 2.7E-23 148.3 7.5 162 269-432 1-162 (162)
25 PF03023 MVIN: MviN-like prote 99.8 2.8E-15 6E-20 148.2 31.2 204 38-243 195-403 (451)
26 TIGR02900 spore_V_B stage V sp 99.7 1E-15 2.2E-20 154.5 25.6 203 35-242 219-433 (488)
27 PF01554 MatE: MatE; InterPro 99.7 4.2E-18 9.1E-23 145.0 5.4 160 49-209 1-162 (162)
28 COG0728 MviN Uncharacterized m 99.7 9.1E-14 2E-18 135.5 35.4 204 38-243 229-437 (518)
29 TIGR00797 matE putative efflux 99.7 8.8E-16 1.9E-20 147.5 19.2 182 269-453 1-186 (342)
30 PRK10459 colanic acid exporter 99.7 2E-13 4.4E-18 137.8 34.8 200 37-242 203-404 (492)
31 PRK15099 O-antigen translocase 99.6 1.1E-13 2.4E-18 136.5 26.7 199 36-241 210-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 2.5E-12 5.4E-17 117.8 32.1 246 60-328 3-250 (251)
33 COG2244 RfbX Membrane protein 99.6 1.1E-12 2.5E-17 132.0 26.1 185 36-225 208-394 (480)
34 PF04506 Rft-1: Rft protein; 99.1 9.3E-08 2E-12 95.6 29.4 405 44-449 4-455 (549)
35 PF07260 ANKH: Progressive ank 99.0 2.1E-06 4.5E-11 77.2 29.5 315 38-361 8-343 (345)
36 KOG1347 Uncharacterized membra 99.0 1.3E-08 2.8E-13 100.3 17.1 181 257-441 24-205 (473)
37 KOG2864 Nuclear division RFT1 99.0 2E-06 4.3E-11 80.7 29.0 415 39-461 6-446 (530)
38 PF04506 Rft-1: Rft protein; 98.5 2E-05 4.4E-10 79.1 22.3 203 40-243 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 3E-05 6.6E-10 64.2 17.7 79 163-243 2-80 (146)
40 KOG2864 Nuclear division RFT1 98.0 0.0042 9.2E-08 59.0 23.4 200 42-243 240-449 (530)
41 COG4267 Predicted membrane pro 97.8 0.025 5.4E-07 52.6 28.6 322 90-441 73-416 (467)
42 PF14667 Polysacc_synt_C: Poly 97.7 3.1E-05 6.7E-10 64.2 3.1 76 385-461 2-77 (146)
43 PF01943 Polysacc_synt: Polysa 97.3 0.057 1.2E-06 49.5 19.8 159 266-438 4-164 (273)
44 PF13440 Polysacc_synt_3: Poly 97.1 0.036 7.8E-07 50.3 16.7 123 285-423 9-132 (251)
45 PF07260 ANKH: Progressive ank 97.1 0.13 2.8E-06 47.1 18.8 154 258-421 8-168 (345)
46 COG4267 Predicted membrane pro 75.9 77 0.0017 30.4 13.7 114 115-235 320-434 (467)
47 PF04505 Dispanin: Interferon- 61.5 54 0.0012 23.8 6.8 36 319-354 37-72 (82)
48 PF03904 DUF334: Domain of unk 36.1 1.7E+02 0.0036 25.8 6.8 40 113-152 142-181 (230)
49 PF05313 Pox_P21: Poxvirus P21 31.4 2.5E+02 0.0054 23.8 6.8 27 217-243 135-161 (189)
50 KOG2234 Predicted UDP-galactos 22.4 6.9E+02 0.015 23.9 17.0 74 225-307 51-127 (345)
51 PF04505 Dispanin: Interferon- 22.3 3.1E+02 0.0067 19.8 6.1 33 103-135 42-74 (82)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.3e-55 Score=429.99 Aligned_cols=418 Identities=22% Similarity=0.296 Sum_probs=393.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChh
Q 012066 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (471)
Q Consensus 36 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (471)
.++..|+++++++|++++++...+++.+|++++||+|++++++.++++++..+ ...+..|++.|..+.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 56689999999999999999999999999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHH
Q 012066 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (471)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (471)
++++..++++.++++.+++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..++..+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999766664 89999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHhccCC--CCccCCCCHHhhhcHHHHHHHHhHH
Q 012066 195 VSLVALLVHIFVSWLFVNR-MQ-LGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTWTGFTLEAFSGLWQFVKLSAAS 270 (471)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~-~~-~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 270 (471)
.+++++++|+++|++|++. ++ +|+.|+++||++++.+..++..+++.|++. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999997 57 999999999999999999999999988742 3332333344567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q 012066 271 GVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSV 350 (471)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 350 (471)
++++..+...+...+.+++++| ++++|+|+++.++.++.++++.+++++..|.+++++|+||+|++++..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHH
Q 012066 351 IIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLG 430 (471)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 430 (471)
.+++..+++++++++++.++|++|+|+.+.+.+++++.++..++++++.+..+++||.||+|.+++.++.+.|++++|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hccccceecccccccccccc
Q 012066 431 CLMGWV-FHQGVMVWNLGWNDFRWHCN 456 (471)
Q Consensus 431 ~~l~~~-~~~~~~~~~~~~s~~~~~~~ 456 (471)
+++.+. +|..|.||+...++......
T Consensus 409 ~~l~~~~~g~~Gvw~~~~~~~~~~~~~ 435 (455)
T COG0534 409 YLLGFFFLGLAGVWIGFPLSLILRAIL 435 (455)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 999999 99999999888877664443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1e-49 Score=395.57 Aligned_cols=413 Identities=14% Similarity=0.121 Sum_probs=373.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHH
Q 012066 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (471)
Q Consensus 39 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~ 118 (471)
..|+++++++|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++.+..++++|++|++|+|+++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 48999999999999999999999999999999999999999999999887 77889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHH
Q 012066 119 VYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG--QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (471)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (471)
+..++++.++..++++..++ +++.++++.++. .|+|+.+.+.+|+++..++.++..+...+++++|+.||++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 99999999999999877765 778889998884 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHhcc-C--CCCccCC-CCHHhhhcHHHHHHHH
Q 012066 196 SLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCG-G--CPLTWTG-FTLEAFSGLWQFVKLS 267 (471)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~----~~gi~g~a~a~~i~~~i~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~ 267 (471)
+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +++.+++.+|++++.|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 9999999999999999853 68999999999999999988876666543 1 1222222 1122456799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 012066 268 AASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVV 347 (471)
Q Consensus 268 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~ 347 (471)
+|.++..........+.+.+++++| +.++|+|+++.++.++.+++..|++++..|.+++++|++|++++|+..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999988888888888888889998 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhH
Q 012066 348 TSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGV 427 (471)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (471)
+++.+++.++++++.+++++..+|++|+|+.+.+...+++.++..++++.+.+..+.++|.||++.+++.++.+.|++++
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--ccccceecccccccccc
Q 012066 428 PLGCLMGWVF--HQGVMVWNLGWNDFRWH 454 (471)
Q Consensus 428 ~l~~~l~~~~--~~~~~~~~~~~s~~~~~ 454 (471)
|+.+++.... |..|.||+..+++....
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~~~~~~~~ 452 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMFLDWAVRG 452 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999998764 45556776666555433
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.7e-49 Score=392.69 Aligned_cols=413 Identities=19% Similarity=0.231 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhH
Q 012066 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (471)
Q Consensus 37 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (471)
++..|++++++.|.+++++...+.+.+|+.+++|+|++++++++++.++..+ ...+..|++.+..+.++|++|++|+|+
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 5578999999999999999999999999999999999999999999999988 677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHH
Q 012066 117 LGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (471)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (471)
+++..++++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.++..+....++++++.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998777665567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHhccC-C-CCcc-CCCCHHhhhcHHHHHHHHhH
Q 012066 197 LVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGG-C-PLTW-TGFTLEAFSGLWQFVKLSAA 269 (471)
Q Consensus 197 ~~~~~~~i~l~~~li~~~----~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~p 269 (471)
+++.++|+++|+++++.+ ++|+.|+++|+.+++....+...+++++++ . +.+. ++..+.+++.+|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999853 379999999999999888877766666542 1 1111 12223345679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q 012066 270 SGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTS 349 (471)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 349 (471)
.+++++.+...+.+++.+++++| ++++|++++++++..+.+++..+++++..+.++|++|+||+|++++..+++..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHH
Q 012066 350 VIIGLFFWLLIMIYHNELALIFSS--SE---AVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYL 424 (471)
Q Consensus 350 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (471)
+.++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||+|.+++.++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6889999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcc--ccceecccccccc
Q 012066 425 IGVPLGCLMGWVFHQ--GVMVWNLGWNDFR 452 (471)
Q Consensus 425 ~~i~l~~~l~~~~~~--~~~~~~~~~s~~~ 452 (471)
+++|+.+++.+.+|+ .|.|++..+++.+
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~ 432 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLAC 432 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHH
Confidence 999999999987554 4456666666554
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.9e-49 Score=388.77 Aligned_cols=415 Identities=16% Similarity=0.179 Sum_probs=379.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChh
Q 012066 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (471)
Q Consensus 37 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (471)
++..|++++.+.|.+++++...+++.+|+.+++++ |+++++++++++++..+ ...+..+++.+..+.++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45778999999999999999999999999999995 99999999999999987 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHH
Q 012066 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (471)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (471)
++++..++++.++.+++++..++ +.+.++++.+++.|++..+.+.+|+++..++.++..+.....+++|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999877765 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCcc--CCCCHHhhhcHHHHHHHHhHHHH
Q 012066 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTW--TGFTLEAFSGLWQFVKLSAASGV 272 (471)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~ 272 (471)
.++.+.++|+++++++++.+++|+.|+++|+.+++.+..++..+++++++.+.++ +++ +.+++.+|++++.|.|.++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHH
Confidence 9999999999999999998889999999999999999998887777655222222 222 2335668999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q 012066 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (471)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (471)
+.....+...+.+.+++++|+ +.++|+++++.++..+.+++..+++++..|.+++++|+||+|++++..+.+.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999998888888884 5679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHH
Q 012066 353 GLFFWLLIMIYHNELALIFSS-SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGC 431 (471)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 431 (471)
+++.++++..+++++.++|++ |+|+.+.+.+++++.+++.++++++.+..+++++.||++.++..+... +++++|+.+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHH
Confidence 999999999999999999995 789999999999999999999999999999999999999999999877 678999999
Q ss_pred HHHHHhccccceeccccccccccc
Q 012066 432 LMGWVFHQGVMVWNLGWNDFRWHC 455 (471)
Q Consensus 432 ~l~~~~~~~~~~~~~~~s~~~~~~ 455 (471)
++...+|..|.||++..+++...+
T Consensus 404 ll~~~~G~~Gvw~a~~~~~~~~~~ 427 (453)
T PRK09575 404 ILPKWLGVDGVWLAMPLSNIALSL 427 (453)
T ss_pred HHHHHHCcchHhhHHHHHHHHHHH
Confidence 999889999999998887766433
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=376.64 Aligned_cols=411 Identities=15% Similarity=0.104 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChh
Q 012066 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (471)
Q Consensus 37 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (471)
+++.|++++++.|.++++++..+++.+|+.+++++ |++++++++++.++..+ ...+..+++.+..+.+||++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45688999999999999999999999999999998 78899999999999998 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHH
Q 012066 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (471)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (471)
++++..++++.++.+++++..++ ..+.++++.+++.|+++.+.+.+|+++..++.|+..+..++.+++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999877765 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccC-CC-CccCCCCHHhhhcHHHHHHHHhHHHH
Q 012066 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGG-CP-LTWTGFTLEAFSGLWQFVKLSAASGV 272 (471)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (471)
.++++.++|+++++++++.+++|+.|+++|+.+++.+..++..+++++++ .+ .+.+.++.+.++.+|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888777776542 11 11111221112458999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q 012066 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (471)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (471)
++..+...+.+.+.+++++| +.++|+|+++.++.++.++++.|++++..|.++|++|+||+|++|+..+++.++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCc---chhhHHHHHHHHHHHhHHH
Q 012066 353 GLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGW---QSYVAYINLGCYYLIGVPL 429 (471)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l 429 (471)
+..++++++.+++++..+|++|+|+.+.+..++++.++..+......+..+++++.+| +|.++..+.++.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999988764433345444555666665 99999999998765332
Q ss_pred HHHHHHHhccccceeccccccccccc
Q 012066 430 GCLMGWVFHQGVMVWNLGWNDFRWHC 455 (471)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~s~~~~~~ 455 (471)
..+.+|..|.||+...++.....
T Consensus 400 ---~~~~~g~~Gvw~a~~~~~~~~~i 422 (441)
T PRK10367 400 ---TLPWLGNHGLWLALTVFLALRGL 422 (441)
T ss_pred ---HHHHcCchHHHHHHHHHHHHHHH
Confidence 22457888888887766554433
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.2e-47 Score=380.33 Aligned_cols=423 Identities=18% Similarity=0.304 Sum_probs=382.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 012066 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (471)
Q Consensus 34 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~ 113 (471)
+..++..|+++++++|.+++++...+.+.+|+.+++++|++++++++++.++... ...+..|++.+..+.+||++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4457789999999999999999999999999999999999999999999998776 667888999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHH
Q 012066 114 YYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (471)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (471)
+|+.++..++++.+.+.+++++.++ +.+.+++..+++.|++..+.+.+|+++.+++.++..+...+++++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999877765 777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHhccCCC--C-ccCCCCHHhhhcHHHHHH
Q 012066 193 AWVSLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGGCP--L-TWTGFTLEAFSGLWQFVK 265 (471)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~----~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 265 (471)
++.+.++.++|+++++++++.. ++|+.|+++++.+++.+..++..++++|++.. . .+.++.+.+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 9999999999999999998642 46999999999999999999888887765211 1 112222334567899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 012066 266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVS 345 (471)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~ 345 (471)
.++|..+++..+...+.++..+++++| ++++++++++.++.++..+++.+++.+..+.++|++|+||++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999998 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHH
Q 012066 346 VVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLI 425 (471)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 425 (471)
.++++.++++.+++++.+++++.++|++|+++.+.+..++++..+..++++++....+++++.||++.+++.+.++.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHH--hccccceeccccccccccccccC
Q 012066 426 GVPLGCLMGWV--FHQGVMVWNLGWNDFRWHCNPNL 459 (471)
Q Consensus 426 ~i~l~~~l~~~--~~~~~~~~~~~~s~~~~~~~~~~ 459 (471)
++|+.+++.+. +|..|.||+..+++.+.......
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~ 437 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLL 437 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHH
Confidence 99999998876 56667888888877765544333
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.3e-36 Score=292.17 Aligned_cols=337 Identities=26% Similarity=0.473 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 012066 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (471)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 128 (471)
|.+++++...+...+|+.+++++|++++++++++.++..+ ...+..|++++..+.++++.|++|+|+.++..++++.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999998887 777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 012066 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVS 207 (471)
Q Consensus 129 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 207 (471)
.+++++.+++ +++.+++..+++.+++..+.+..+++++.++.++..+.....+.+++.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999887765 788899998888788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CCcchhHHHHHHHHHHHHHHHHHHHhcc-CCCCccCCCCHHhhhcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012066 208 WLFVN-RMQ-LGVIGTAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRIL 284 (471)
Q Consensus 208 ~~li~-~~~-~gi~g~a~a~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 284 (471)
+++++ .++ +|+.|+++++.+++++..++..++.+|+ +.+.++++..+.+++..|++++++.|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 677 7899999999999999998887777653 33322222122234668999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012066 285 ISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (471)
Q Consensus 285 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (471)
+.+++.+| +.++++|+++.++.++...++.+++++..|.++++++++|+++.++..+++.++.+.++++.+.++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCcHHHHHHHHHHHHHH
Q 012066 365 NELALIFSSSEAVLQAVNKLSILL 388 (471)
Q Consensus 365 ~~i~~l~~~~~~~~~~~~~~l~i~ 388 (471)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888888764
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.7e-36 Score=305.08 Aligned_cols=408 Identities=13% Similarity=0.060 Sum_probs=341.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHhccCChhHHHH
Q 012066 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIEL-AAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGV 119 (471)
Q Consensus 43 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~s~~~~~~~~~~~~~ 119 (471)
+.|.+.-..++++++.+++++|.+++++ +|++++ ++++++.++...+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 899999 899999999876333333 468888777776654322 57777
Q ss_pred HHHHHHHHHHHHH-HHHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHH
Q 012066 120 YMQRSWIVLFVCC-VLLLPL-YLFASPVLKLL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (471)
Q Consensus 120 ~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (471)
...+++......+ ++..++ +++.+++..++ +.+++..+.+.+|++++.++.++..+....++++|+.+|++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666555444 444444 67778888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHH
Q 012066 196 SLVALLVHIFVSWLFVNRMQLGVIGTA--ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (471)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~~~gi~g~a--~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (471)
+++.++++++..+++ ..++|..|++ +++++++.+..++.+++.+|++.+.+. +++ .+++.+|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 999988877643333 3467999988 999999999988887776654322111 121 1235689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q 012066 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMM-IPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (471)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (471)
+....+...++..+.+.++ +.++++|+.+.++.+++.. +..+++++..|.+++++|++|++++++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877776 5678899999999998875 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHH
Q 012066 353 GLFFWLLIMIYHNELALIFSS----SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (471)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (471)
++|+++++..+++++.+++.+ |+|..+...+++++++++.++.+++.+....+++.||+|.+++.+..+ .++++|
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHH
Confidence 999999999999999999876 557788899999999999999999999999999999999999999998 688999
Q ss_pred HHHHHHHHhccccceeccccccccccccccC
Q 012066 429 LGCLMGWVFHQGVMVWNLGWNDFRWHCNPNL 459 (471)
Q Consensus 429 l~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~ 459 (471)
+++++.+.+|..|.+|++.+++.........
T Consensus 393 l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~ 423 (502)
T TIGR01695 393 LSLLLIFPLGLVGIALATSAASMVSSVLLYL 423 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887765444433
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.9e-36 Score=303.87 Aligned_cols=409 Identities=12% Similarity=0.093 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHHHHHH
Q 012066 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (471)
Q Consensus 44 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~ 122 (471)
.|.+.|.+++++...+.+++|+.+++| +|+|++|.++.+.++..++......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 7999999999999998874444556999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012066 123 RSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (471)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (471)
+++.+..+.++++.++ +.+.+++...++.+++. ..++++..+..++..+....++++++.+|++..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999877765 66777776666655543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc-----CCCcchhHHHHHHHHHHHHHHHHHHHhcc-CCC--CccCCCCHHhhhcHHHHHHHHhHHHHH
Q 012066 202 VHIFVSWLFVNRM-----QLGVIGTAATLNFSWWILVFGLFGYVSCG-GCP--LTWTGFTLEAFSGLWQFVKLSAASGVM 273 (471)
Q Consensus 202 ~~i~l~~~li~~~-----~~gi~g~a~a~~i~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (471)
+++.++..++..+ +.++.|+++++.+++.+..+...++.+|+ +.+ ..+.+.++.+++.+|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9987766665421 24678888999999999988876665544 211 111112223356789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC----c-hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012066 274 LCLENWYYRILISMTGNLQ----N-AE---IAVDAL-SICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIV 344 (471)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~----~-~~---~~~a~~-~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~ 344 (471)
++...+...+++.++++.. . .. ...+.| +++.++..++..+..+++++..|.++++.|++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988886542 1 01 223333 4567788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHH
Q 012066 345 SVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYL 424 (471)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (471)
+.++...++.|.++++..+++++..++.++++ +.+++++.++..++.+++.+..+++++.||+|..++.+..+ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999876543 56789999999999999999999999999999999999998 68
Q ss_pred HhHHHHHHHH--HHhccccceeccccccccccccccCCC
Q 012066 425 IGVPLGCLMG--WVFHQGVMVWNLGWNDFRWHCNPNLDS 461 (471)
Q Consensus 425 ~~i~l~~~l~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 461 (471)
+++++++++. +.+|..|+++++.+++...........
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~ 431 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEI 431 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 889999999999888777555555444
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=282.71 Aligned_cols=408 Identities=44% Similarity=0.721 Sum_probs=389.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 012066 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (471)
Q Consensus 34 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~ 113 (471)
+..+.+.|++++++.|.++..+.+...+.+++.++||+|+.++++.+++++..+.+...+..|+..+..++++|++|.++
T Consensus 21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~ 100 (473)
T KOG1347|consen 21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK 100 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence 33478899999999999999999999999999999999999999999999999987888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHH
Q 012066 114 YYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (471)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (471)
++......+++..+....+++...++.+.+++...++.|+++...+..|.++..+..+..........+++++++.....
T Consensus 101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHH
Q 012066 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (471)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (471)
+......++|+.+++++++..++|..|++++..+++.+.......|.....++..|..+..+ .+.+++++++++|.+++
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 99999999999999999999999999999999999999999998888766556667777666 78899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q 012066 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIG 353 (471)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (471)
...+++.+.+..+..+.+++...+++..++..++....++++.+++.++..++++.+|+++.+++|...+.....++..+
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g 339 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIG 339 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999998788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHHHH
Q 012066 354 LFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLM 433 (471)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 433 (471)
...+..++...+.+.++|++|+++.+...+..++++...++++.+.+..++.++.|++++..+.+..+.+++++|..+.+
T Consensus 340 ~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l 419 (473)
T KOG1347|consen 340 ASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYL 419 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccc
Q 012066 434 GWVFHQGVM 442 (471)
Q Consensus 434 ~~~~~~~~~ 442 (471)
...++.++.
T Consensus 420 ~~~~~~g~~ 428 (473)
T KOG1347|consen 420 GFFTKFGVK 428 (473)
T ss_pred EEEEecCce
Confidence 977777773
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=3.8e-33 Score=274.71 Aligned_cols=396 Identities=11% Similarity=-0.010 Sum_probs=333.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHHHHH
Q 012066 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (471)
Q Consensus 43 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~ 121 (471)
+.|.+.....++++..+.+++...+++| +|++++|.++..+++...+......|++++..+.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 79999999999999888745555888888888899987 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 012066 122 QRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL 200 (471)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (471)
+.++.+.+..+++++++ +.+.+|+...++.+++. ..+..+..+..++..+.....+.+|+.+|++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877765 78888988877766653 34566666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCC-CCccCCCCHHhhhcHHHHHHHHhHHHHHHHHHHH
Q 012066 201 LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGC-PLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENW 279 (471)
Q Consensus 201 ~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 279 (471)
++|+.+ +++.... .|+.|+++|+++++.+..+...++++|++. +.+..+++ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444332 399999999999999988777776665422 11111222 2345689999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHH
Q 012066 280 YYRILISMTG-NLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFW 357 (471)
Q Consensus 280 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (471)
....++.+++ .+| ++++|+|+.+.++.+. ...+..+++++..|.++++ +|+++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 776 7799999999999885 4789999999999999995 6789999999999999999999999
Q ss_pred HHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHHHHHHHh
Q 012066 358 LLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVF 437 (471)
Q Consensus 358 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 437 (471)
++++++++++.+++.+|+ ++.+.+++++.+++.++...+......+.+.++++.....++.. .++++|+++++.+.+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~~ 385 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPLH 385 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999998775 66678899999999999888888888888888888877777666 788999999999999
Q ss_pred ccccceeccccccccccc
Q 012066 438 HQGVMVWNLGWNDFRWHC 455 (471)
Q Consensus 438 ~~~~~~~~~~~s~~~~~~ 455 (471)
|..|++|++.+++.....
T Consensus 386 G~~G~a~a~~is~~~~~~ 403 (416)
T PRK15099 386 GALGAAQAYMATYIVYFS 403 (416)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999999877554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=2e-28 Score=241.42 Aligned_cols=383 Identities=15% Similarity=0.105 Sum_probs=327.2
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 012066 71 LGDI-ELAAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLK 147 (471)
Q Consensus 71 lg~~-~~~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 147 (471)
+|.. +..+|.++.++..++...+. .+++++..|..++.. ++|+|+.++..+..+.+..+..+.++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 45689999999998444444 568999999999998 8888999999998888887777766665 788899888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCC---cchhH
Q 012066 148 LL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG---VIGTA 222 (471)
Q Consensus 148 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---i~g~a 222 (471)
.+ +.+++..+.+.+.++++.+..++..+..++.+++++++|...+....++.++..+....++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 5678889999999999999999999999999999999999999999999887766644433333 36 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 012066 223 ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALS 302 (471)
Q Consensus 223 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 302 (471)
++..++.+++.++.....+|...+.+.. ++.+ .+..|++++...|..+.....++...+++.+.+.++ +.++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHH
Confidence 9999999999999888888764332221 1111 244899999999999999999999999999999998 45688999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----cHHH
Q 012066 303 ICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSS----SEAV 377 (471)
Q Consensus 303 ~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~ 377 (471)
.+.++.+++. .+..+++++..|.++++..++|.++.++..++.++..+.+.+|+++++..+++++++++.. |+|.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999988 5678999999999999999999999999999999999999999999999999999988642 5666
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHHHHHHHhccccceeccccccccccccc
Q 012066 378 LQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMVWNLGWNDFRWHCNP 457 (471)
Q Consensus 378 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~s~~~~~~~~ 457 (471)
.+.....+++++++.++.+++.+....+++.||+|.+.+.+.++ .++++.+++++.+.+|..|.++++.++.++....-
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l 396 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPFFGVAGLALATSLSAIISALLL 396 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999 78999999999999999999988887766544443
Q ss_pred cCCC
Q 012066 458 NLDS 461 (471)
Q Consensus 458 ~~~~ 461 (471)
....
T Consensus 397 ~~~l 400 (451)
T PF03023_consen 397 YILL 400 (451)
T ss_pred HHHH
Confidence 3333
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=4.6e-27 Score=227.48 Aligned_cols=407 Identities=11% Similarity=0.036 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHhccCChhHH
Q 012066 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDI-ELAAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYML 117 (471)
Q Consensus 41 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~s~~~~~~~~~~~ 117 (471)
++++|.+.-....++++.+.+++...+++. +|+. ...++.++.++.+++--.+. ..++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 457777788888899999999998888888 7885 46799999999998544333 35799999999999888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHH
Q 012066 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLL-GQ--PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (471)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (471)
++..+........+.+..+++ .++.+.+.+.. +. |++....+....+++.+..++.++.....+.+++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777766665666666666655 66677777444 32 234333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHH
Q 012066 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (471)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (471)
+..+..++.-+.....+.........+.++++.++-+.+.++.+..++|.....+. ++..++ +.+|++.+.-.|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p-~~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKP-RFGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCCCCc-hhHHHHHHHHHHHHHH
Confidence 99999988888666555554322367889999999999999999999887322221 111111 4589999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q 012066 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (471)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (471)
....++...+++.+.+.+.+ .+++.+..+.++.+++. .+..++++++.|.++++..++|+++.++..+.+++.++++
T Consensus 245 ~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974 45779999999999999 7789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHH
Q 012066 353 GLFFWLLIMIYHNELALIFSS----SEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (471)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (471)
++|.++++.++++|+.+++.. ++++.....+.+..++++.++.++..+....+++.+|+|.++++.+++ .++++.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHH
Confidence 999999999999999988642 456678889999999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHHhccccceecccccccc
Q 012066 429 LGCLMGWVFHQGVMVWNLGWNDFR 452 (471)
Q Consensus 429 l~~~l~~~~~~~~~~~~~~~s~~~ 452 (471)
+++.+...+|..|.+.++..+.++
T Consensus 402 l~~~l~~~~~~~giala~s~a~~~ 425 (518)
T COG0728 402 LNLLLIPPLGHVGLALATSLAAWV 425 (518)
T ss_pred HHHHHHhhccchHHHHHHHHHHHH
Confidence 999999999999976666665444
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=5e-27 Score=236.59 Aligned_cols=389 Identities=10% Similarity=0.022 Sum_probs=311.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHH
Q 012066 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (471)
Q Consensus 40 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~ 118 (471)
.++..+.+.+..++++...+.+++...+++| +|++++|.++.+..+..++......|++++.. |. .++++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~---- 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH---- 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----
Confidence 3567888889999999999999999999999 79999999999999999856667778887643 21 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 012066 119 VYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSL 197 (471)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (471)
+.....+.+....++++.++ +.+.+++...++ +++ ....+++..+..++..+.....+.++..++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 23344555666666655554 445555554443 443 234677778888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHHHHHH
Q 012066 198 VALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLE 277 (471)
Q Consensus 198 ~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 277 (471)
...++...+...+.. .+.|+.+.+++..+++.+..+...+..++ +.++++ +++ ++..|++++++.|...++...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~~---~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HFS---LASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-eec---HHHHHHHHhhhHHHHHHHHHH
Confidence 888887777665554 46799999999999988877654433333 222211 122 345899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q 012066 278 NWYYRILISMTGNLQNAEIAVDALSICMTINGWEMM-IPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (471)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (471)
.+..++|.++++.+. +++++|.|+.+.++.+++.. +...++++..|..++. ++|.++.++..++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988876 37889999999999988664 5556788999999886 5788999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 012066 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV 436 (471)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 436 (471)
++++..+++++..++.+|+ +..+.+.++++++..++..+.......+++.||+|..++.+.+. .++.+|..+++.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~ 377 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQL 377 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhh
Confidence 9999999999998887665 77789999999999999999999999999999999999999887 78889999999999
Q ss_pred hccccceecccccccccc
Q 012066 437 FHQGVMVWNLGWNDFRWH 454 (471)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~ 454 (471)
+|..|.+|++.+++....
T Consensus 378 ~G~~g~a~a~~i~~~~~~ 395 (492)
T PRK10459 378 AGLIGVALGFLLVQIINT 395 (492)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 999999999888766543
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=1.7e-24 Score=217.75 Aligned_cols=389 Identities=14% Similarity=0.071 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHH
Q 012066 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (471)
Q Consensus 39 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (471)
..+++.|.+.....+++.+.+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++..+++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 46678899999999999999999999999999 79999999999999999867767789999999999988766665555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHH
Q 012066 118 GVY-MQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (471)
Q Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (471)
... ....+......+.+.........+. + +.....+++..+..++........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 554 4444444444443333332222221 1 2234457788999999999999999999999999999995
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHHHHH
Q 012066 197 LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCL 276 (471)
Q Consensus 197 ~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 276 (471)
+.+ ..-....+.+.. .......++...+..........+..+++........+ ..++..|+.+++++|....+..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR-FSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC-chhHHHHHHHHHhhHHHHHHHH
Confidence 444 111222222221 24455666666666666655555553221111111111 1346699999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q 012066 277 ENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (471)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (471)
..+..+.|+++++++. +++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 488999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 012066 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV 436 (471)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 436 (471)
.+++..+++++..++.+++ +..+...++++++..++.+........+++.|+++...+.+.++ .+.++.+++++++.
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~ 384 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPR 384 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHh
Confidence 9999999999999987765 44588999999999999999999999999999999999999999 68999999999999
Q ss_pred hccccceecc
Q 012066 437 FHQGVMVWNL 446 (471)
Q Consensus 437 ~~~~~~~~~~ 446 (471)
+|..|++.++
T Consensus 385 ~g~~g~~~a~ 394 (480)
T COG2244 385 FGLIGAAIAT 394 (480)
T ss_pred hhhhhHHHHH
Confidence 9999976655
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.87 E-value=4e-20 Score=183.96 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChh
Q 012066 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (471)
Q Consensus 36 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (471)
.++..|+++|.++|.+++++.......+|+.+++++|++++++++++.++..+ ...+..|++.+..++++|++|++|+|
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~~ 309 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRLL 309 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45679999999999999999999999999999999999999999999999998 77889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccch
Q 012066 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ--PD---DVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKN 189 (471)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 189 (471)
++++..+.++.++.+.+++..++ +.+.+++.+++.. ++ |+.+.+..|+++.+++.++..+..++.+.+|+.|++
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 99999999999999999877765 7788999988853 33 688899999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 012066 190 MVIAWVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (471)
Q Consensus 190 ~~~~~~~~~~~-~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~ 242 (471)
+.+++.+++.. ++++++++++.+.+++|+.|+++++.+++.+..+.....+++
T Consensus 390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985 999999999998888999999999999999988776665543
No 17
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=2.6e-19 Score=178.68 Aligned_cols=207 Identities=20% Similarity=0.188 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChh
Q 012066 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (471)
Q Consensus 36 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (471)
.++..|++++.++|.+++++.......++..+++++|++++++++++.++.++ ...+..|++.+.++.++|++|++|++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSL-LFMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 35678999999999999999999999999999999999999999999999998 67788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHH
Q 012066 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (471)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (471)
++++..+.++.++...+++..++ +.+.+++..++..|+++.+.+..++++..+..++..+.....+.+++.||++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 99999999999999999877765 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 195 VSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 195 ~~~~~~-~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
.++++. ++++++.+++.+..++|+.|+++++.+++++..++..+++++.
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 7899999988887788999999999999999999887776653
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.85 E-value=5.3e-19 Score=174.45 Aligned_cols=208 Identities=20% Similarity=0.227 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 012066 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (471)
Q Consensus 34 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~ 113 (471)
+.+++..|++++.+.|..++++.......+.+.+++++|++.+++++++.++.++ ...+..|+++++++++++++|++|
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4456899999999999999999999999999999999999999999999999998 888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHH
Q 012066 114 YYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (471)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (471)
+|++++..+.++.++..+++...++ +.+.+++..++..|+++.+.+..++++..+..++...+....+++||.||++.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999877765 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 193 AWVSLVA-LLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 193 ~~~~~~~-~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
++.++.+ ..+.+++.+++.+.. +|..|.+++...++.+..+...++++++
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997 666788888887764 7999999999999999999988888765
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=2.1e-18 Score=171.79 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChh
Q 012066 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (471)
Q Consensus 36 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (471)
.++..|++++.+.|..++.+...+...+.+.+++++|++++++++++.++.++ ......|++++.++++++++|++|.|
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~-~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAAL-INLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999988889999999999999999999998 77789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHH
Q 012066 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (471)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (471)
++++..+.+..++.+.++.+.++ +.+.+++..++..|+++.+.+..++++.++..++.....+..+.++|.||++.++.
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999998877765 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccC
Q 012066 195 VSLVA-LLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGG 244 (471)
Q Consensus 195 ~~~~~-~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~ 244 (471)
.++.. .++.+++.+++....++|+.|++++..+++.+..++..+.+++.+
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~ 463 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGR 463 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99987 578888888887767889999999999999999988777776553
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.83 E-value=2.9e-18 Score=170.42 Aligned_cols=205 Identities=14% Similarity=0.186 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCh
Q 012066 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (471)
Q Consensus 36 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~ 114 (471)
.++..|++++.+.|..+++....+...+.+.+++++|+ +++++++++.++..+ ...+..|++.+.++.++|++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 45678999999999999999999999999999999885 689999999999998 7779999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHH
Q 012066 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ-PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (471)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (471)
|++++..+.++.+++..+++..++ +.+.+++..++.. |+++.+.+.+|+++..++.++..+.....+++++.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999887775 7789999999985 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
+..+....++++++.+++... +|+.|+++++.+++.+..++..++++++
T Consensus 388 ~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 388 LFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888777654 5999999999999999888877776654
No 21
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.83 E-value=1.1e-18 Score=172.02 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=180.4
Q ss_pred hhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH
Q 012066 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (471)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 336 (471)
+++.|+++++++|..+.++...+...+|+.++++++ +++++|+.+++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 355889999999999999999999999999999996 3678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHH
Q 012066 337 GAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAY 416 (471)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (471)
++++..+++...++.++++..+....+.+++..+++.|+|+.+.+.+++++..++.++..++.+..+++++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHh--ccccceecccccccc
Q 012066 417 INLGCYYLIGVPLGCLMGWVF--HQGVMVWNLGWNDFR 452 (471)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~~--~~~~~~~~~~~s~~~ 452 (471)
.++++ .++++++++++++.+ |..|++|++.++++.
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~ 200 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYA 200 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 99999 788999999998855 566689998887665
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=4.4e-17 Score=165.00 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhH
Q 012066 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (471)
Q Consensus 37 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (471)
++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++..+....+..+++++..|.++++++++|+|+
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 35688999999999999999999999999886668999999999999999874445678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhH
Q 012066 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ----PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (471)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (471)
.++..++++......+++..++ ..+++++..++.. +++..+.+.+++++.+++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999888875 7889999988765 4577788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 192 IAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 192 ~~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
+++.+....++|++++++++..+ |..|+++++.+++.+..++..++.+|+
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~~--G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFPL--GLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988754 999999999999999998888777764
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=5.2e-16 Score=143.98 Aligned_cols=271 Identities=15% Similarity=0.118 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHHHHH
Q 012066 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (471)
Q Consensus 43 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~ 121 (471)
++|.+.....+++...+.+++...+++| +|+|++|.++....+.+++......|++++..+..++...+ +++.+...
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888899999999999999999999 79999999999999999855566889999988888876432 34455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 012066 122 QRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (471)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (471)
........+.+++..+...... ....+ +... .+........++.........++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS----FFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444443333322211 33333 2211 12222222225777888899999999999999999999988
Q ss_pred HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHHHHHHHHHH
Q 012066 202 VHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYY 281 (471)
Q Consensus 202 ~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 281 (471)
...++...++.. +.+..+..++..++..+..++..++.+|+. +.++ +..+++..|++++++.|..+.++...+..
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc---cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666654 335889999999999999888888777642 1222 22224668999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012066 282 RILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANE 329 (471)
Q Consensus 282 ~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~ 329 (471)
+.|.++++.+. +++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 488999999999999999999999999999999875
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=1.2e-18 Score=148.28 Aligned_cols=162 Identities=23% Similarity=0.389 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 012066 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (471)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (471)
|..++++.+...+.+++.+++++| ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999996 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHH
Q 012066 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (471)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (471)
+..++++.++.+..+++++..+|++|+|+.+.+.+++++..++.++.++.....+++++.||++..++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 012066 429 LGCL 432 (471)
Q Consensus 429 l~~~ 432 (471)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=2.8e-15 Score=148.23 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHH
Q 012066 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (471)
Q Consensus 38 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (471)
+..|++++...|..++....++...+|+.+.+.+++.++++++.++++.+++...+..++++...|..|+...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 35888999999999999999999999999999999999999999999999967778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHH
Q 012066 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (471)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (471)
++..++++.....+.++.++. +.+++|+++.+. .+.+..+....++++++++.++..+...+...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999875 889999998764 356777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
+..++++.++|++++.++...+ |..|.++|+.++..++.++.+++++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~~--g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPFF--GVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888765 999999999999999999988888775
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=1e-15 Score=154.47 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------H---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHH
Q 012066 35 TIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGD------I---ELAAI-SIANNVIVGFDFGLLLGMASALET 103 (471)
Q Consensus 35 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~ 103 (471)
..++..|++++++.|..++++...+...+|+.++++ +++ + .+|.+ +.+.++..+ ...+..+++.+..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999987 432 1 22333 345566666 45678899999999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012066 104 LCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRF 182 (471)
Q Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 182 (471)
.++++.+++|+|+.++..++...+....+++..++ ..+++++..++..++ ++.++++++++..++........+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887775 778888888876443 3577899999999999999999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 012066 183 LQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (471)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~ 242 (471)
+++.||+|..++.++...++|++++++++...++|+.|+++++.+++.+..++..++.+|
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988873334699999999999999999888887765
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=4.2e-18 Score=144.98 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 012066 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (471)
Q Consensus 49 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 128 (471)
|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++.+..+.++|++|++|+|++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999998 777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-HHHHHH
Q 012066 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL-LVHIFV 206 (471)
Q Consensus 129 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 206 (471)
.+++++..++ +.+.+++..+++.|++..+.+.+|+++..++.++........+++++.||++..++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999988876 88899999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 012066 207 SWL 209 (471)
Q Consensus 207 ~~~ 209 (471)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=9.1e-14 Score=135.45 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHH
Q 012066 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (471)
Q Consensus 38 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~ 117 (471)
+..|++.+...|+.++...+++..++|+.+.+.+.+...+.+..++.+++++.-.+..++++...|..|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 57899999999999999999999999999999999999999999999999977789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHH
Q 012066 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (471)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (471)
++..++++.+..+..++.++. ..+++|+.+.+. .+++......+.+....++.++..+..++...+++++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999986 889999998763 245566677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
+++.+++.++|+.+++.+...+ |..|.++++.++.+++..++++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~~--~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPPL--GHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997777654 888899999999999998888888776
No 29
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.70 E-value=8.8e-16 Score=147.54 Aligned_cols=182 Identities=17% Similarity=0.164 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 012066 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (471)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (471)
|.++.++...+...+++.+++++| ++++++++.+.++..+...+..+++++..|.++++.|++|+|++++..++...+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999998 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHH
Q 012066 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVP 428 (471)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (471)
...++++.++++..+++++..+++.|++..+.+.+++++.+++.++.+++.....++++.||++...+.++++ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987788889999999999999999999999999999999999999999998 578899
Q ss_pred HHHHHHH-Hhc---cccceeccccccccc
Q 012066 429 LGCLMGW-VFH---QGVMVWNLGWNDFRW 453 (471)
Q Consensus 429 l~~~l~~-~~~---~~~~~~~~~~s~~~~ 453 (471)
+.+++.+ .+| ..|.+|++.+++...
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~ 186 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLM 186 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 9888887 666 556777777665543
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.68 E-value=2e-13 Score=137.76 Aligned_cols=200 Identities=13% Similarity=-0.006 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChh
Q 012066 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (471)
Q Consensus 37 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~ 115 (471)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.......+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4567999999999999999999999999999999 69999999999999988745555566788888999885 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHH
Q 012066 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (471)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (471)
+.++.+++...+....++++.++ ...+++++..+.+++ ...+.+.++++++...+..........+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 99999999999999999888875 778899888776543 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 012066 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (471)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~ 242 (471)
.+++..+++++..+.+... +|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888776666543 499999999999999988888877755
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.64 E-value=1.1e-13 Score=136.47 Aligned_cols=199 Identities=7% Similarity=-0.051 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCh
Q 012066 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (471)
Q Consensus 36 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~ 114 (471)
+++..|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 45678999999999999999999999999999985 89999999999999988535778899999999999995 577
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHH
Q 012066 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (471)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (471)
|+.++..++........+++..++ ++++++++.++.+++ .+.+.+++++++++.++...+......+.+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888888777765 688999998887654 23367789999999888888887777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 012066 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVS 241 (471)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~ 241 (471)
...+...++++++++++++.+ |..|+++++.+++.+..++......
T Consensus 365 ~~~~~~~~l~i~l~~~li~~~--G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPLH--GALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998999999999999865 9999999999999999987765544
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.63 E-value=2.5e-12 Score=117.77 Aligned_cols=246 Identities=13% Similarity=0.109 Sum_probs=178.8
Q ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012066 60 MLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL 138 (471)
Q Consensus 60 ~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (471)
.+++..++++| +|++++|.++....+..+.......|++..... ..++|+++.++..+..+....+.++...++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999 899999999999999998444456677766444 234566677777766665544444333332
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 012066 139 YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGV 218 (471)
Q Consensus 139 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gi 218 (471)
...+..++ .+++ ...++....+..+.........+.+++++|.+.....+....+....+...+.. .+.+.
T Consensus 78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 11111233 2332 233456677778888889999999999999999999999998888555444444 33488
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCHHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012066 219 IGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAV 298 (471)
Q Consensus 219 ~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (471)
.+..++..++.++..++.....+++ .+ ..+ +.+ .++.++.+.|..+.++......+.+..+++.+. +.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK-LR--LSF----KFS-WRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cC--CCc----hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH
Confidence 8899999999888877665543322 11 111 112 234799999999999999999999999999944 38899
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 012066 299 DALSICMTINGWEM-MIPLAFFAGTGVRVAN 328 (471)
Q Consensus 299 a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~ 328 (471)
|.|+++.++...+. .+..++++...|.++|
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.1e-12 Score=131.98 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCh
Q 012066 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (471)
Q Consensus 36 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~ 114 (471)
.++..|+.++.+.|....++...+.+.+|+.++++ +|++++|.|+.+.++... ...+...++....|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46789999999999999999999999999999999 799999999988888887 7778899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHH
Q 012066 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (471)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (471)
++.++..++.+......+++..++ ..+++|+...+.+++.. .+...+.+.++..++..+.......+++.||++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999988876 78888998877655432 277789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHH
Q 012066 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATL 225 (471)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~ 225 (471)
..+.++.++|++++++++..+ |..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~~--g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPRF--GLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHhh--hhhhHHHHH
Confidence 999999999999999999865 889999988
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.14 E-value=9.3e-08 Score=95.65 Aligned_cols=405 Identities=10% Similarity=-0.033 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhccCChhHHHHHH
Q 012066 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGF-DFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (471)
Q Consensus 44 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~ 121 (471)
.+-+.-.++.++++.+..++-+.++-| ++++.+|..++=..+.... ....=-++..+..+.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 355667788899999999987777777 8999998886655554431 22333467777555433321122233333333
Q ss_pred HHHHHHHHHHHHHHHHH-H-HhhHH----HHHHcCCC-HH---HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHhcc
Q 012066 122 QRSWIVLFVCCVLLLPL-Y-LFASP----VLKLLGQP-DD---VAELSGMVSIWMIPLHFSFAFQFPL----QRFLQSQL 187 (471)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~-~~~~~----i~~~~~~~-~~---~~~~~~~~~~i~~~~~~~~~~~~~~----~~~l~~~~ 187 (471)
+....+..+.++++..+ + ..+.| ...+.... ++ ..+.....+.+...+...-.+...+ +..+.-..
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 33222233332222211 1 11111 11111111 11 1223333444555555554444444 44444445
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-cCCCc-----ch-hHHHHHHHHHHHHHHHHHHHhcc-CCC-----CccCCCCH
Q 012066 188 KNMVIAWVSLVALLVHIFVSWLFVNR-MQLGV-----IG-TAATLNFSWWILVFGLFGYVSCG-GCP-----LTWTGFTL 254 (471)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~l~~~li~~-~~~gi-----~g-~a~a~~i~~~i~~~~~~~~~~~~-~~~-----~~~~~~~~ 254 (471)
|.+.-........+.+..+.+..... .+++. .+ +.++..++++...+......... ..+ ...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555555443333211 11111 11 23445556555544332211111 111 11112211
Q ss_pred H---hhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 012066 255 E---AFSGLWQFVKLSAASGVMLCLENWYYRILISMTGN--LQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVAN 328 (471)
Q Consensus 255 ~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~ 328 (471)
. ....-++.++.......+++.-.+..+-+.+++.. +.+ .++-|.|++++++.+++. .+...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0 11123789999999999999999999999999988 664 677889999999999876 7788899999999988
Q ss_pred HhhCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012066 329 ELGAGNG---------KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQP 399 (471)
Q Consensus 329 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 399 (471)
...+++. +++.+.....++....+++.+...-.-.++.+.+++.++.-........++.++...++.++++
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765433 4466677777777777777777777777777777776543223345789999999999999999
Q ss_pred HHHHHHhhcCcchhhHHHHH--HHHHHHhHHHHHHHHHH-hccccceeccccc
Q 012066 400 ILSGVAVGSGWQSYVAYINL--GCYYLIGVPLGCLMGWV-FHQGVMVWNLGWN 449 (471)
Q Consensus 400 ~~~~~l~~~g~~~~~~~~~~--~~~~~~~i~l~~~l~~~-~~~~~~~~~~~~s 449 (471)
+..++.++..+.+.....+- ....++.+..++++... +|..|..||..++
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iN 455 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCIN 455 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 99999999988776544322 22245667788889985 7777777765443
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=2.1e-06 Score=77.19 Aligned_cols=315 Identities=13% Similarity=0.059 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCh
Q 012066 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL--GD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (471)
Q Consensus 38 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~ 114 (471)
...+++.++-+|..++.+...+...+-+.-+++- .+ +.+++|+++..+.-+ .......+.+.... ++++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~-----~V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLV-----FVNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHH-----Hhcchh
Confidence 4677899999999999999999999988889873 33 348999999999887 55566666555333 334443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-H-HhhHHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhH
Q 012066 115 YMLGVYMQRSWIVLFVCCVLLLPL-Y-LFASPVL-KLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (471)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (471)
++.+..... .....+...+..++ + .+...++ ..++.++++.+.++..+.++.+--++.++....++++--++++..
T Consensus 82 srr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 322222222 22222222222222 2 3444444 556889999999999999999999999999999998887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCc-chh---HHHHHHHHHHHH--HHHHHHHhccCCCCccCCCCHHhhhcHHHHHH
Q 012066 192 IAWVSLVALLVHIFVSWLFVNRMQLGV-IGT---AATLNFSWWILV--FGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVK 265 (471)
Q Consensus 192 ~~~~~~~~~~~~i~l~~~li~~~~~gi-~g~---a~a~~i~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (471)
....++...+..+++...++.. ++.. ..+ ..+...+..+.. +.+.+|..-++..+...........-++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 7777766655555555455531 1111 111 122222222222 11222222222222222222222345899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH----
Q 012066 266 LSAASGVMLCLENWYYRILISMTGN-LQNA---EIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKG---- 337 (471)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~---- 337 (471)
+.+|.+.....+.+.-.+.+.++++ ++.+ +++++...+.+...-..+....-+ .+..|..-.+--+++..+
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~ 318 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNP 318 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCc
Confidence 9999999999999999999999999 5532 356666666665555555554443 244555433222222221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Q 012066 338 -AKFATIVSVVTSVIIGLFFWLLIM 361 (471)
Q Consensus 338 -~~~~~~~~~~~~~~~~~~~~~~~~ 361 (471)
.+..++|....++.+++..++.++
T Consensus 319 v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 319 VTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233667777777777776665543
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.02 E-value=1.3e-08 Score=100.33 Aligned_cols=181 Identities=12% Similarity=0.138 Sum_probs=165.1
Q ss_pred hhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCh
Q 012066 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNG 335 (471)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~g~~~~ 335 (471)
+++.|++.+++.|..+....+.....++...++++| +.+.++.+.+....+. .+.+..++..+..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 567899999999999999999999999999999999 4478899999888776 5578899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 012066 336 KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVA 415 (471)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (471)
+....+.+++........+|.+.. +.+.+++...+..|+++...+..+.+......+-.+........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999999999888888854 5555999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccc
Q 012066 416 YINLGCYYLIGVPLGCLMGWVFHQGV 441 (471)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~~~~~~ 441 (471)
+....+ .++++++.+++++..+++.
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~ 205 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGI 205 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCC
Confidence 999998 8999999999999988885
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=2e-06 Score=80.73 Aligned_cols=415 Identities=13% Similarity=-0.022 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhccCChhH
Q 012066 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGF-DFGLLLGMASALETLCGQAFGAKRYYM 116 (471)
Q Consensus 39 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (471)
...+-.+-+.-.+..+++..+..++-+.++-| ++++.+|..++-..+..-. .+..--++.-+..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 44556667777788888889888887777767 8999999988766665531 2222234555544333221 123445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC-CHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHH
Q 012066 117 LGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQ-PDD-VAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (471)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (471)
..+..+.+..+..+..+.+.-++ +.+... |+. ..+.-..-+.+...+...-.+...+.-..|..-+.+.-.+
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~w------l~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFW------LGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHH------HHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 55555555555544443333221 111111 111 1222222344455555555555555666666666666677
Q ss_pred HHHHHHHHH-HHHHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHH-HHhccC-CCCc---------cCCCCHH--hhhc
Q 012066 195 VSLVALLVH-IFVSWLFVNRMQ-LGVIGTAATLNFSWWILVFGLFG-YVSCGG-CPLT---------WTGFTLE--AFSG 259 (471)
Q Consensus 195 ~~~~~~~~~-i~l~~~li~~~~-~gi~g~a~a~~i~~~i~~~~~~~-~~~~~~-~~~~---------~~~~~~~--~~~~ 259 (471)
.+.+..++. ++.-..++.+-+ .++.--|+|.......-.+...+ |++.++ .+.. .++.... ..-.
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 776666666 332222222221 24444455555444333332222 333222 1100 0111000 0001
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChHH
Q 012066 260 LWQFVKLSAASGVMLCLENWYYRILISMTGNLQN-AEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKG 337 (471)
Q Consensus 260 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~~ 337 (471)
-++..+.-....-+.+.-++...-+..+++.... +-.+-|.|.++++..++.. ++...+-.......++...+++.|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 2456666666666666777777777766664321 1224559999999988766 7788888888888888887666555
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 012066 338 AKFA---TIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYV 414 (471)
Q Consensus 338 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 414 (471)
.|+. .....+....+++.....-.-.++++..+++++.-.-..+...++++++..++.+++.+..++.++.++.+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 5544 4445555555555554444556667777776543222235588999999999999999999999998877665
Q ss_pred HHHHH--HHHHHHhHHHHHHHHHHhccccceeccccccccccccccCCC
Q 012066 415 AYINL--GCYYLIGVPLGCLMGWVFHQGVMVWNLGWNDFRWHCNPNLDS 461 (471)
Q Consensus 415 ~~~~~--~~~~~~~i~l~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 461 (471)
..-+- ...-+..+.+++++..++|..|...|-.++-.++-+...+.+
T Consensus 398 ~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI 446 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFI 446 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 122455677899999999998877776665555544444444
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.54 E-value=2e-05 Score=79.08 Aligned_cols=203 Identities=9% Similarity=0.022 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCh--
Q 012066 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH--L-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY-- 114 (471)
Q Consensus 40 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~-- 114 (471)
-+++++.+.....+++...+..--|+.++.. + ..++-|.|++++++-++..=.+...+--+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678888999999999999999999999999 5 8889999999999999866667778888888888887654432
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 012066 115 -------YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQ 186 (471)
Q Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 186 (471)
++..+.+...+.+...+++++..+ ...++.++.++++++...+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 345566777777778888666654 677777788776655555566788999999999999999999999887
Q ss_pred cchhHHHHHH---HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 187 LKNMVIAWVS---LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 187 ~~~~~~~~~~---~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
...+-....+ ....++.+..+++++.+ ++|..|..+|.++...+..+...++.+|.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666554444 44456666777888876 67999999999999999999998888765
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.44 E-value=3e-05 Score=64.24 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=73.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 012066 163 SIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (471)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~ 242 (471)
+++.+++.++..+....++.+++.||++.....+.++.++|+++++++++.+ |..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~--G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRF--GIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999998765 99999999999999999988888877
Q ss_pred c
Q 012066 243 G 243 (471)
Q Consensus 243 ~ 243 (471)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.0042 Score=59.03 Aligned_cols=200 Identities=9% Similarity=0.050 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhHHH
Q 012066 42 KLWYIVGPAIFSRLASYSMLVITQAFAGH---LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (471)
Q Consensus 42 ~i~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~ 118 (471)
+..+......-+.++..+..--|.++++- ++-++-|.|.++++.-++..=.+...+--..-...+|...++++|+.+
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 34444445555667778888888888884 455667788888777776555566677777777777777666665555
Q ss_pred H---HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHH--
Q 012066 119 V---YMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI-- 192 (471)
Q Consensus 119 ~---~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 192 (471)
+ +....+.+...++++++.. ...+++.+.+.++++--...+...+++.+..+++.+++.+..++..+....+-.
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~ 399 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK 399 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence 4 5566666667777555543 667777778777665555556678999999999999999999999887655443
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 193 -AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 193 -~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
.+...+..++.++++++++.++ |..|..+|.++...+.-+....+.++.
T Consensus 400 ~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 400 HNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred cccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677788899999887 779999999999888877776666554
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.85 E-value=0.025 Score=52.58 Aligned_cols=322 Identities=11% Similarity=0.059 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 012066 90 DFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPL 169 (471)
Q Consensus 90 ~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 169 (471)
.+.+..|+....++.+|+..=++|++++..-..-...+....+..+..+ +-....+... .|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si-----~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSI-----VYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhH-----HHHHHHHHH
Confidence 4446678888888899988878888777665544444443333332211 1111222211 122233444
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 012066 170 HFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTW 249 (471)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~ 249 (471)
....+..-+...++.+.+|.+.....-.++.++.+.+..++-. .++.|..++..++..+.......+..|.-...+.
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 5555666667788999999999999999998888887766543 4899999999999999888887777765111111
Q ss_pred CCCCHHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH------HHHHHHHHHHHHHHHH-----HHH
Q 012066 250 TGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVD------ALSICMTINGWEMMIP-----LAF 318 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~i~~~~~~~~-----~~i 318 (471)
..++.-. ..++. ....+.++.-.+.-.+++.+.=.-+++++-.+ .|-+..-...+...|. ..+
T Consensus 218 i~FdFL~--~~~~y----~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 218 IGFDFLL--YRRKY----PSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred cceehhh--hhhcc----hHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 1121110 01111 11223333444444555544322222221111 2333333333322222 223
Q ss_pred HHHHHHHHHHHhhC-----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHH
Q 012066 319 FAGTGVRVANELGA-----------GNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSIL 387 (471)
Q Consensus 319 ~~a~~p~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i 387 (471)
-+...+.--+.+.+ ++.++.....++.+.-.+-+-...++.++.+++.+...+.-++. ..+.+.+
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~v 367 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYV 367 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHH
Confidence 33333332222211 23344445556666666667778888999999999888765432 2333334
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHHHHHHHhcccc
Q 012066 388 LAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGV 441 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~ 441 (471)
-.++......-....++.--..+.+.....+. ..+..+.+++..+...|
T Consensus 368 d~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~-----~fli~N~ilT~i~l~lg 416 (467)
T COG4267 368 DVLGVSCQIVFMSLLNIFLYFDYRRIALELTA-----LFLISNGILTFIFLELG 416 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----HHHHHhHHHHHHHHHhC
Confidence 44443333333333333333444444333332 23445566666554444
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.67 E-value=3.1e-05 Score=64.19 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHhHHHHHHHHHHhccccceeccccccccccccccCCC
Q 012066 385 SILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMVWNLGWNDFRWHCNPNLDS 461 (471)
Q Consensus 385 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 461 (471)
+++++++.++.+.....+.++++.||+|..++.+.++ .++++++++++.+.+|..|+++++..++...........
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYV 77 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999 899999999999999999999999988877665555555
No 43
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.26 E-value=0.057 Score=49.53 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=91.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012066 266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMI-PLAFFAGTGVRVANELGAGNGKGAKFATIV 344 (471)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~ 344 (471)
-+......+....+..-+...++.+.. ++++.|.|+....+.++...+ ..|+.++..-..++...+ .++.++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~ 80 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSS 80 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHH
Confidence 344444555555555555555555554 378899999999999888766 678888887777766432 2333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhhcCcchhhHHHHHHHHH
Q 012066 345 SVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFT-ILLNSVQPILSGVAVGSGWQSYVAYINLGCYY 423 (471)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 423 (471)
........++.......+.. .+. +++. .. ...+.... .++.........++++.++.+.....++...
T Consensus 81 ~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 81 VLFLLLIFSLIFLLILLIAS-----FFG-NPSL-SL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HcC-CchH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333333222222222222 333 3321 11 11222222 2577888889999999999999988888874
Q ss_pred HHhHHHHHHHHHHhc
Q 012066 424 LIGVPLGCLMGWVFH 438 (471)
Q Consensus 424 ~~~i~l~~~l~~~~~ 438 (471)
+..+.+.+.+....+
T Consensus 150 ~~~~~~~~~~~~~~~ 164 (273)
T PF01943_consen 150 LLSLLLILLLLFLGS 164 (273)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555545454444433
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.12 E-value=0.036 Score=50.26 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=78.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012066 285 ISMTGNLQNAEIAVDALSICMTINGWEMMI-PLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIY 363 (471)
Q Consensus 285 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (471)
.++...++ +++.|.|+....+..+...+ ..++.+...- ..++|+++.++..+.........++...+.
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL---- 77 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34444444 78899999999998887776 3444433322 233556666666655555444444433333
Q ss_pred hhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHH
Q 012066 364 HNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYY 423 (471)
Q Consensus 364 ~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 423 (471)
...+...+ ++++ ...++.+..+..++..+.......+++.+|.+.....+.....
T Consensus 78 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (251)
T PF13440_consen 78 AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL 132 (251)
T ss_pred HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22232333 3433 2345566677778889999999999999999999988888743
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.07 E-value=0.13 Score=47.14 Aligned_cols=154 Identities=9% Similarity=0.131 Sum_probs=106.6
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH
Q 012066 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNL-QNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (471)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 336 (471)
..+++++++-+|.+++..+..+.-++.+.-+++- -+..+..|.|+++..+.-+...+...+.+.....+.. +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 4588999999999999999999999988888763 3334668999999999998888888877766655532 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh-----hhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCc
Q 012066 337 GAKFATIVSVVTSVIIGLFFWLL-IMIYHNE-----LALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGW 410 (471)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 410 (471)
|+...... ...+..++.+ ..+.-.+ +.+++.-++++.+.+...+.++.+.-+++++.....+++.=.++
T Consensus 83 --rr~~vl~~---~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 83 --RRKAVLCM---AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred --hHHHHHHH---HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 22222222 2222222222 1222222 23555668899999999999999999999999999998885566
Q ss_pred chhhHHHHHHH
Q 012066 411 QSYVAYINLGC 421 (471)
Q Consensus 411 ~~~~~~~~~~~ 421 (471)
+......++..
T Consensus 158 s~iV~~aSI~~ 168 (345)
T PF07260_consen 158 SWIVGSASIAD 168 (345)
T ss_pred eeEeehHHHHH
Confidence 66555545443
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=75.88 E-value=77 Score=30.42 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHH
Q 012066 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (471)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (471)
++.....++++.-..-.-.+.++. +..++.+..+++.++.. .+.+++-..+.........+-...--.++.+...
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344445555555555555555554 67788888888766543 3446666666666555555556666677777888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 012066 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFG 235 (471)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~i~~~~ 235 (471)
.....-.+.|-++++++... +-+..|+. ..++.++..++
T Consensus 396 ~~t~~fli~N~ilT~i~l~l-gp~~~g~g--ff~a~fl~vlv 434 (467)
T COG4267 396 ELTALFLISNGILTFIFLEL-GPGYYGVG--FFLASFLYVLV 434 (467)
T ss_pred hhhhHHHHHhHHHHHHHHHh-CccceehH--HHHHHHHHHHH
Confidence 88888888888888877653 33444433 23444444433
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=61.53 E-value=54 Score=23.78 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q 012066 319 FAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGL 354 (471)
Q Consensus 319 ~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 354 (471)
+-.....+.+.+.+||++++++.-+++.+++.+-..
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 334455677788899999999999999888754333
No 48
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=36.12 E-value=1.7e+02 Score=25.83 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCC
Q 012066 113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQP 152 (471)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (471)
+++...+.+..++...+.+..++++++.+..++..+++.+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 4444455555555555554445555566677777777643
No 49
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=31.43 E-value=2.5e+02 Score=23.78 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=19.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 217 GVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 217 gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
++.|...+..+++.+.+++...|..+.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 445666777888888888777776654
No 50
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=22.41 E-value=6.9e+02 Score=23.87 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhcc-CC--CCccCCCCHHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 012066 225 LNFSWWILVFGLFGYVSCG-GC--PLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDAL 301 (471)
Q Consensus 225 ~~i~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 301 (471)
...++++-.+++...+.++ +. +...+..++..+...++.++.++|..+ -.+-+++..+-...+. .+.|
T Consensus 51 v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~i----YalqNnl~yval~~ld-----aaty 121 (345)
T KOG2234|consen 51 VFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALI----YALQNNLQYVALSNLD-----AATY 121 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHH----HHHhhhHHHHHHhcCC-----chhh
Confidence 3444444444444443333 11 223344555556777899999999986 3333444445555543 2356
Q ss_pred HHHHHH
Q 012066 302 SICMTI 307 (471)
Q Consensus 302 ~~~~~i 307 (471)
++.++.
T Consensus 122 qVt~ql 127 (345)
T KOG2234|consen 122 QVTYQL 127 (345)
T ss_pred hhhhhH
Confidence 665554
No 51
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=22.31 E-value=3.1e+02 Score=19.82 Aligned_cols=33 Identities=6% Similarity=-0.014 Sum_probs=24.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHHH
Q 012066 103 TLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLL 135 (471)
Q Consensus 103 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (471)
..+-+.+.+||++++++.-+++..++.+..++.
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667778999999998888887776554433
Done!