Query 012066
Match_columns 471
No_of_seqs 243 out of 2067
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 20:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.8E-48 6.2E-53 388.6 35.3 421 34-457 5-439 (460)
2 3mkt_A Multi antimicrobial ext 99.8 6.3E-20 2.2E-24 182.3 19.8 206 37-243 234-446 (460)
3 2k1k_A Ephrin type-A receptor 24.5 77 0.0026 18.3 2.9 17 219-235 14-30 (38)
4 2ks1_B Epidermal growth factor 14.6 2.2E+02 0.0074 17.0 4.5 10 234-243 29-38 (44)
5 2jwa_A Receptor tyrosine-prote 14.6 2.1E+02 0.007 17.1 3.3 10 234-243 29-38 (44)
6 2l2t_A Receptor tyrosine-prote 10.7 3E+02 0.01 16.4 4.0 6 237-242 31-36 (44)
7 3hd7_A Vesicle-associated memb 7.7 4.3E+02 0.015 18.5 3.7 27 335-361 57-83 (91)
8 3hd7_B Syntaxin-1A; membrane p 7.6 4E+02 0.014 19.4 3.6 27 333-359 70-96 (109)
9 2wgm_A ATP synthase subunit C, 6.5 6.9E+02 0.024 17.4 4.3 17 111-127 44-60 (89)
10 4aw6_A CAAX prenyl protease 1 5.5 1.7E+03 0.06 21.0 11.2 19 423-441 175-193 (482)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.8e-48 Score=388.64 Aligned_cols=421 Identities=18% Similarity=0.286 Sum_probs=387.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 012066 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (471)
Q Consensus 34 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~ 113 (471)
...++..|++++.+.|.+++++...+.+.+|+.+++++|++++|+++++.++..+ ...+..|++.+..+.+++++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5567889999999999999999999999999999999999999999999999876 677889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHH
Q 012066 114 YYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (471)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (471)
+|+.++.+++++.+..+.++++.+++.+.++++.+++.+++..+.+..|++++.++.++..+....++++++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877667788888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-c---CCCcchhHHHHHHHHHHHHHHHHHHHhccCCCC--c-cCCCCHHhhhcHHHHHHH
Q 012066 194 WVSLVALLVHIFVSWLFVNR-M---QLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL--T-WTGFTLEAFSGLWQFVKL 266 (471)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~-~---~~gi~g~a~a~~i~~~i~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 266 (471)
..++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++++|++... + ++++.+.+++.+|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 4 589999999999999999998888887662211 1 122323446779999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012066 267 SAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSV 346 (471)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~ 346 (471)
++|..++++.+.+.+.+++.+++++| ++++|+|+++.++.++..++..+++++..|.+++++|++|.+++++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHHh
Q 012066 347 VTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIG 426 (471)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 426 (471)
++++.++++++++++++++++..+|.+|+++.+.+.+++++++++.++++++.+..+++++.||+|.+++.++++.++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHH-------hccccceeccccccccccccc
Q 012066 427 VPLGCLMGWV-------FHQGVMVWNLGWNDFRWHCNP 457 (471)
Q Consensus 427 i~l~~~l~~~-------~~~~~~~~~~~~s~~~~~~~~ 457 (471)
+|+++++.+. +|..|.||++.+++.......
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~ 439 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALML 439 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHH
Confidence 9999999999 899999999888876654433
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=6.3e-20 Score=182.31 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCChhH
Q 012066 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (471)
Q Consensus 37 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~ 116 (471)
++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++.++ ...+..+++++..|.+++.+|++|+|+
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4467889999999999999999999999999999999999999999999998 677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccchhHHHHH
Q 012066 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (471)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (471)
.++..+++..+...++++..++ +.+.+++..++..|++..+.+.+++++.+++.++..+.....+.+++.||++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999888875 788999999988888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhh----cC-CCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 012066 196 SLVAL-LVHIFVSWLFVNR----MQ-LGVIGTAATLNFSWWILVFGLFGYVSCG 243 (471)
Q Consensus 196 ~~~~~-~~~i~l~~~li~~----~~-~gi~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (471)
++++. ++++++++++.+. .+ +|+.|+++++.+++.+..++..++++|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 9999999999987 55 7999999999999999988776666554
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.46 E-value=77 Score=18.26 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=7.3
Q ss_pred chhHHHHHHHHHHHHHH
Q 012066 219 IGTAATLNFSWWILVFG 235 (471)
Q Consensus 219 ~g~a~a~~i~~~i~~~~ 235 (471)
.|..++.+.+-.+...+
T Consensus 14 AGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 34444444444433333
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=14.60 E-value=2.2e+02 Score=17.02 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.2
Q ss_pred HHHHHHHhcc
Q 012066 234 FGLFGYVSCG 243 (471)
Q Consensus 234 ~~~~~~~~~~ 243 (471)
+..+++.+|+
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.57 E-value=2.1e+02 Score=17.14 Aligned_cols=10 Identities=0% Similarity=-0.360 Sum_probs=4.6
Q ss_pred HHHHHHHhcc
Q 012066 234 FGLFGYVSCG 243 (471)
Q Consensus 234 ~~~~~~~~~~ 243 (471)
+....|++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3334455544
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.72 E-value=3e+02 Score=16.43 Aligned_cols=6 Identities=33% Similarity=0.180 Sum_probs=2.4
Q ss_pred HHHHhc
Q 012066 237 FGYVSC 242 (471)
Q Consensus 237 ~~~~~~ 242 (471)
+++.+|
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 334444
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=7.69 E-value=4.3e+02 Score=18.47 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012066 335 GKGAKFATIVSVVTSVIIGLFFWLLIM 361 (471)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (471)
.+--++..++.+++.+++++.+.++++
T Consensus 57 ~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 57 AKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777776666665555444
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=7.57 E-value=4e+02 Score=19.38 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 012066 333 GNGKGAKFATIVSVVTSVIIGLFFWLL 359 (471)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (471)
++.+++.++-+++.+...++.+++.++
T Consensus 70 ~eL~kA~~yqk~~rkk~~i~l~~~~i~ 96 (109)
T 3hd7_B 70 SDTKKAVKYQSKARRKKIMIIICCVIL 96 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcceehHHHHHHH
Confidence 344555555555555554444433333
No 9
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=6.50 E-value=6.9e+02 Score=17.37 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=9.8
Q ss_pred cCChhHHHHHHHHHHHH
Q 012066 111 AKRYYMLGVYMQRSWIV 127 (471)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (471)
.+|+|..++.+.+.+..
T Consensus 44 arqPe~~~~l~~~~ii~ 60 (89)
T 2wgm_A 44 ARQPEAKGDIISTMVLG 60 (89)
T ss_dssp HHCGGGHHHHHHHHHHH
T ss_pred HhCchHhhhHHHHHHHH
Confidence 35667666666555543
No 10
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=5.49 E-value=1.7e+03 Score=21.02 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHhcccc
Q 012066 423 YLIGVPLGCLMGWVFHQGV 441 (471)
Q Consensus 423 ~~~~i~l~~~l~~~~~~~~ 441 (471)
.+++.|+...+.......|
T Consensus 175 ~vi~~pl~~~~~~ii~~~g 193 (482)
T 4aw6_A 175 QCILLPVSSLLLYIIKIGG 193 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 5667777777777777666
Done!