Query 012066
Match_columns 471
No_of_seqs 243 out of 2067
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 20:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012066.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012066hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkzb_ f.3.1.1 (B:) Light-har 11.9 1.2E+02 0.0084 16.2 4.4 33 335-367 8-40 (41)
2 d1pv7a_ f.38.1.2 (A:) Lactose 6.4 5.6E+02 0.041 20.1 18.9 7 217-223 377-383 (417)
3 d1ijdb_ f.3.1.1 (B:) Light-har 5.6 2.4E+02 0.017 14.8 4.0 30 335-364 9-38 (40)
4 d2yvxa3 f.57.1.1 (A:276-448) M 2.6 9.6E+02 0.07 17.1 6.7 29 110-138 70-98 (173)
5 d2r6gf2 f.58.1.1 (F:261-504) M 2.3 1.1E+03 0.081 17.3 6.9 33 339-371 14-46 (244)
6 d1m56d_ f.23.8.1 (D:) Bacteria 2.3 5.5E+02 0.04 13.6 5.2 32 331-362 5-36 (42)
7 d1qled_ f.23.8.1 (D:) Bacteria 2.2 5.9E+02 0.043 13.6 5.2 33 331-363 6-38 (43)
8 d1j1va_ a.4.12.2 (A:) Chromoso 2.1 7.9E+02 0.058 15.2 3.3 29 316-344 42-70 (94)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 2.1 4E+02 0.029 16.8 1.6 19 260-278 61-79 (91)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 2.1 8.5E+02 0.062 15.2 8.9 64 221-287 33-97 (100)
No 1
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=11.88 E-value=1.2e+02 Score=16.21 Aligned_cols=33 Identities=12% Similarity=-0.055 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012066 335 GKGAKFATIVSVVTSVIIGLFFWLLIMIYHNEL 367 (471)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (471)
-++..+....+.+....+++..=++.+...+++
T Consensus 8 aEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 8 SEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 477888888999998888888877777776654
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.45 E-value=5.6e+02 Score=20.10 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=3.0
Q ss_pred CcchhHH
Q 012066 217 GVIGTAA 223 (471)
Q Consensus 217 gi~g~a~ 223 (471)
|.....+
T Consensus 377 g~~~~~~ 383 (417)
T d1pv7a_ 377 GFQGAYL 383 (417)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5444433
No 3
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.60 E-value=2.4e+02 Score=14.84 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012066 335 GKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (471)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (471)
-++..+....+.+....++++.=++.+...
T Consensus 9 aEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 9 AEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 467788888888888888777666655544
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.56 E-value=9.6e+02 Score=17.09 Aligned_cols=29 Identities=10% Similarity=-0.158 Sum_probs=18.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012066 110 GAKRYYMLGVYMQRSWIVLFVCCVLLLPL 138 (471)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (471)
|+-+.++.++...+=+...+..+..+.++
T Consensus 70 g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 70 RDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp TCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44356667777777777777776555543
No 5
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.31 E-value=1.1e+03 Score=17.26 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 012066 339 KFATIVSVVTSVIIGLFFWLLIMIYHNELALIF 371 (471)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 371 (471)
++..+++...++.+++....+...++-.++.+.
T Consensus 14 ~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l 46 (244)
T d2r6gf2 14 QKPFLAIFVWTVVFSLITVFLTVAVGMVLACLV 46 (244)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555444
No 6
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.30 E-value=5.5e+02 Score=13.64 Aligned_cols=32 Identities=6% Similarity=-0.079 Sum_probs=17.0
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012066 331 GAGNGKGAKFATIVSVVTSVIIGLFFWLLIMI 362 (471)
Q Consensus 331 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (471)
|+-|...-.+...--+++....++.+.+.+++
T Consensus 5 G~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 5 GSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544444443
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=2.17 E-value=5.9e+02 Score=13.61 Aligned_cols=33 Identities=3% Similarity=0.022 Sum_probs=17.3
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012066 331 GAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIY 363 (471)
Q Consensus 331 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (471)
|+-|...-.+...--+++....++.+.++++++
T Consensus 6 G~MDi~vQEkTF~gFi~~~t~~~i~~i~~lifl 38 (43)
T d1qled_ 6 GEMDIRHQQATFAGFIKGATWVSILSIAVLVFL 38 (43)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444444433
No 8
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.14 E-value=7.9e+02 Score=15.25 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012066 316 LAFFAGTGVRVANELGAGNGKGAKFATIV 344 (471)
Q Consensus 316 ~~i~~a~~p~~~~~~g~~~~~~~~~~~~~ 344 (471)
.-......+.+|+.+|.+|+.-+....++
T Consensus 42 r~~~~~sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 42 KELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHhCCCCchHHHHHHHH
Confidence 34444567889999988888877776665
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.08 E-value=4e+02 Score=16.83 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 012066 260 LWQFVKLSAASGVMLCLEN 278 (471)
Q Consensus 260 ~~~~~~~~~p~~~~~~~~~ 278 (471)
..|.....+|..+-.....
T Consensus 61 ~lEi~WtiIP~iil~~iav 79 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFLAV 79 (91)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHH
Confidence 4588888899877554443
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.07 E-value=8.5e+02 Score=15.24 Aligned_cols=64 Identities=6% Similarity=0.054 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc-CCCCccCCCCHHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012066 221 TAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISM 287 (471)
Q Consensus 221 ~a~a~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 287 (471)
..++..+.-.+...+.+...+++ +......+.+... .-|+...-+|..+-......+......+
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~---~LEiiWTviP~lILi~l~~pS~~~ly~m 97 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNS---PLEIAWTIVPIVILVAIGAFSLPVLFNQ 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!