BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012068
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/255 (58%), Positives = 183/255 (71%), Gaps = 6/255 (2%)
Query: 37 DRISALPGQPPVTFSQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPGCSSV 96
DRI+ LPGQP V F +SGY+TV+E GR+LFY L EA A PLVLWLNGGPGCSSV
Sbjct: 5 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 64
Query: 97 AYGASEEIGPFRINRNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTSSNLKDSGDNR 156
AYGASEE+G FR+ G+ L LN+Y W++ AN+LFL+SPAGVGFSYTNTSS++ SGDNR
Sbjct: 65 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 157 TAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIINLKGF 216
TA D+ FL +W RFP YKYR+FYIAGESYAGHYVP+L++ + P+INLKGF
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 180
Query: 217 IVGNAVTDNYYDSIGTVTFWWTHSMISDKTYRSIINHC-NFSAEKSSKKCDDTVNYAMNH 275
+VGN + D+Y+D +GT FWW H ++SD TYR + C + S S CD + A
Sbjct: 181 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA- 239
Query: 276 EFGDIDQYSIYTPSC 290
E G+ID YS+YTP C
Sbjct: 240 EQGNIDMYSLYTPVC 254
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/255 (58%), Positives = 183/255 (71%), Gaps = 6/255 (2%)
Query: 37 DRISALPGQPPVTFSQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPGCSSV 96
DRI+ LPGQP V F +SGY+TV+E GR+LFY L EA A PLVLWLNGGPGCSSV
Sbjct: 9 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 68
Query: 97 AYGASEEIGPFRINRNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTSSNLKDSGDNR 156
AYGASEE+G FR+ G+ L LN+Y W++ AN+LFL+SPAGVGFSYTNTSS++ SGDNR
Sbjct: 69 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 157 TAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIINLKGF 216
TA D+ FL +W RFP YKYR+FYIAGESYAGHYVP+L++ + P+INLKGF
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 184
Query: 217 IVGNAVTDNYYDSIGTVTFWWTHSMISDKTYRSIINHC-NFSAEKSSKKCDDTVNYAMNH 275
+VGN + D+Y+D +GT FWW H ++SD TYR + C + S S CD + A
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA- 243
Query: 276 EFGDIDQYSIYTPSC 290
E G+ID YS+YTP C
Sbjct: 244 EQGNIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/255 (58%), Positives = 183/255 (71%), Gaps = 6/255 (2%)
Query: 37 DRISALPGQPPVTFSQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPGCSSV 96
DRI+ LPGQP V F +SGY+TV+E GR+LFY L EA A PLVLWLNGGPGCSSV
Sbjct: 4 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 63
Query: 97 AYGASEEIGPFRINRNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTSSNLKDSGDNR 156
AYGASEE+G FR+ G+ L LN+Y W++ AN+LFL+SPAGVGFSYTNTSS++ SGDNR
Sbjct: 64 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 157 TAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIINLKGF 216
TA D+ FL +W RFP YKYR+FYIAGESYAGHYVP+L++ + P+INLKGF
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 179
Query: 217 IVGNAVTDNYYDSIGTVTFWWTHSMISDKTYRSIINHC-NFSAEKSSKKCDDTVNYAMNH 275
+VGN + D+Y+D +GT FWW H ++SD TYR + C + S S CD + A
Sbjct: 180 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA- 238
Query: 276 EFGDIDQYSIYTPSC 290
E G+ID YS+YTP C
Sbjct: 239 EQGNIDMYSLYTPVC 253
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 308 bits (790), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/255 (58%), Positives = 183/255 (71%), Gaps = 6/255 (2%)
Query: 37 DRISALPGQPPVTFSQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPGCSSV 96
DRI+ LPGQP V F +SGY+TV+E GR+LFY L EA A PLVLWLNGGPGCSSV
Sbjct: 9 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 68
Query: 97 AYGASEEIGPFRINRNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTSSNLKDSGDNR 156
AYGASEE+G FR+ G+ L LN+Y W++ AN+LFL+SPAGVGFSYTNTSS++ SGDNR
Sbjct: 69 AYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 157 TAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIINLKGF 216
TA D+ FL +W RFP YKYR+FYIAGESYAGHYVP+L++ + P+INLKGF
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 184
Query: 217 IVGNAVTDNYYDSIGTVTFWWTHSMISDKTYRSIINHC-NFSAEKSSKKCDDTVNYAMNH 275
+VGN + D+Y+D +GT FWW H ++SD TYR + C + S S CD + A
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA- 243
Query: 276 EFGDIDQYSIYTPSC 290
E G+ID YS+YTP C
Sbjct: 244 EQGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/271 (49%), Positives = 184/271 (67%), Gaps = 9/271 (3%)
Query: 32 KQQKLDRISALPGQP-PVTFSQFSGYVTVNENHGRALFYWLTEAASSALKKP-LVLWLNG 89
+QQ+ DRI LPGQP V F + GYVT+++N+GRAL+YW EA ++ LVLWLNG
Sbjct: 3 QQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNG 62
Query: 90 GPGCSSVAYGASEEIGPFRINRNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTSSNL 149
GPGCSS+ GA +E+G FR++ NG SL LN+Y+W++ ANILF ESPAGVGFSY+NTSS+L
Sbjct: 63 GPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDL 122
Query: 150 KDSGDNRTAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRP 209
GD++ AQD FL++W RFP Y YREFYIAGES GH++PQL++ + Y + + P
Sbjct: 123 S-MGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVV--YRNRNNSP 177
Query: 210 IINLKGFIVGNAVTDNYYDSIGTVTFWWTHSMISDKTYRSIINHC-NFSAEKSSKKCDDT 268
IN +G +V + +T+++ D IG WW H +ISD+T S + C S + +C +
Sbjct: 178 FINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEV 237
Query: 269 VNYAMNHEFGDIDQYSIYTPSCIALPNSTVR 299
N A+ E G+I+ Y+IYTP+C P+ R
Sbjct: 238 WNKAL-AEQGNINPYTIYTPTCDREPSPYQR 267
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Query: 315 YDPCTENYAEKYYNRQEVQKALHANVTG-IPYKWTACSDVLINNWKDSEDSVLPTYKQLI 373
YDPCTE Y+ YYNR++VQ ALHANVTG + Y W CSD + +W D+ S+LP Y++LI
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 374 AAGLKIWVFSGDTDSVVPVTATRFSLSHLNLPIKTPWYPWYSGNQVGGWTEVYKGLTFAT 433
AAGL+IWVFSGDTD+VVP+TATR+S+ L LP T WYPWY +VGGW++VYKGLT +
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 123
Query: 434 VRGAGHEVPLFQPRRALILFRSFLAGKQLP 463
VRGAGHEVPL +PR+AL+LF+ FL GK +P
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Query: 315 YDPCTENYAEKYYNRQEVQKALHANVTG-IPYKWTACSDVLINNWKDSEDSVLPTYKQLI 373
YDPCTE Y+ YYNR++VQ ALHANVTG + Y W CSD + +W D+ S+LP Y++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 374 AAGLKIWVFSGDTDSVVPVTATRFSLSHLNLPIKTPWYPWYSGNQVGGWTEVYKGLTFAT 433
AAGL+IWVFSGDTD+VVP+TATR+S+ L LP T WYPWY +VGGW++VYKGLT +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 434 VRGAGHEVPLFQPRRALILFRSFLAGKQLP 463
VRGAGHEVPL +PR+AL+LF+ FL GK +P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Query: 315 YDPCTENYAEKYYNRQEVQKALHANVTG-IPYKWTACSDVLINNWKDSEDSVLPTYKQLI 373
YDPCTE Y+ YYNR++VQ ALHANVTG + Y W CSD + +W D+ S+LP Y++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 374 AAGLKIWVFSGDTDSVVPVTATRFSLSHLNLPIKTPWYPWYSGNQVGGWTEVYKGLTFAT 433
AAGL+IWVFSGDTD+VVP+TATR+S+ L LP T WYPWY +VGGW++VYKGLT +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 434 VRGAGHEVPLFQPRRALILFRSFLAGKQLP 463
VRGAGHEVPL +PR+AL+LF+ FL GK +P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Query: 315 YDPCTENYAEKYYNRQEVQKALHANVTG-IPYKWTACSDVLINNWKDSEDSVLPTYKQLI 373
YDPCTE Y+ YYNR++VQ ALHANVTG + Y W CSD + +W D+ S+LP Y++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 374 AAGLKIWVFSGDTDSVVPVTATRFSLSHLNLPIKTPWYPWYSGNQVGGWTEVYKGLTFAT 433
AAGL+IWVFSGDTD+VVP+TATR+S+ L LP T WYPWY +VGGW++VYKGLT +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 434 VRGAGHEVPLFQPRRALILFRSFLAGKQLP 463
VRGAGHEVPL +PR+AL+LF+ FL GK +P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 217/459 (47%), Gaps = 49/459 (10%)
Query: 33 QQKLDRISALPGQPPVTFSQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPG 92
Q ++ R+ L QP +F Q+SGY+ + + L YW E+ P+VLWLNGGPG
Sbjct: 4 QDEIQRLPGLAKQP--SFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPG 59
Query: 93 CSSVAYGASEEIGPFRINRNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTSSNLKDS 152
CSS+ G E GPF + +G +L N YSW+ AN+L+LESPAGVGFSY++ +
Sbjct: 60 CSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYAT 116
Query: 153 GDNRTAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIIN 212
D AQ L + FP+YK + ++ GESYAG Y+P LA ++ P +N
Sbjct: 117 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QDPSMN 170
Query: 213 LKGFIVGNAVTDNYYDSIGTVTFWWTHSMISDKTYRSIINH------CNFSAEKSSKKCD 266
L+G VGN ++ + V F + H ++ ++ + S+ H CNF K +
Sbjct: 171 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVT 230
Query: 267 DTVNYAMNHEFGDIDQYSIYTPSCIALPN------STVRPMRLKNTLLR----------- 309
+ A ++ Y++Y P +P+ TV L N R
Sbjct: 231 NLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQAL 290
Query: 310 ----RRVSGYDPCTE-NYAEKYYNRQEVQKALHANVTGIPYKWTACSDVLINNWKDSEDS 364
+V PCT A Y N V+KAL N+ +W C+ ++ ++ S
Sbjct: 291 LRSGDKVRMDPPCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLVNLQYRRLYRS 348
Query: 365 VLPTYKQLIAA-GLKIWVFSGDTDSVVPVTATRFSLSHLNLPIKTPWYPWY-----SGNQ 418
+ Y +L+++ +I +++GD D + + LN ++ PW SG Q
Sbjct: 349 MNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQ 408
Query: 419 VGGWTEVYKGLTFATVRGAGHEVPLFQPRRALILFRSFL 457
+ G+ + + + F T++GAGH VP +P A +F FL
Sbjct: 409 IAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 447
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 111/153 (72%), Gaps = 4/153 (2%)
Query: 315 YDPCTENYAEKYYNRQEVQKALHANVTGI-PYKWTACSDVLINNWKDSEDSVLPTYKQLI 373
YDPC + Y N EVQ ALHANV+GI Y WT CS+ + + W + D +LP Y++LI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 374 AAGLKIWVFSGDTDSVVPVTATRFSLSHLNLPIKTPWYPWY---SGNQVGGWTEVYKGLT 430
AGL++WV+SGDTDSVVPV++TR SL+ L LP+KT WYPWY + +VGGW+ Y+GLT
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 431 FATVRGAGHEVPLFQPRRALILFRSFLAGKQLP 463
+ TVRGAGH VP+ +P +A +LF+ FL G+ +P
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 138/268 (51%), Gaps = 19/268 (7%)
Query: 33 QQKLDRISALPGQPPVTFSQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPG 92
Q ++ R+ L QP +F Q+SGY+ + + L YW E+ P+VLWLNGGPG
Sbjct: 6 QDEIQRLPGLAKQP--SFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPG 61
Query: 93 CSSVAYGASEEIGPFRINRNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTSSNLKDS 152
CSS+ G E GPF + +G +L N YSW+ AN+L+LESPAGVGFSY++ +
Sbjct: 62 CSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYAT 118
Query: 153 GDNRTAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIIN 212
D AQ L + FP+YK + ++ GESYAG Y+P LA ++ P +N
Sbjct: 119 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QDPSMN 172
Query: 213 LKGFIVGNAVTDNYYDSIGTVTFWWTHSMISDKTYRSIINH------CNFSAEKSSKKCD 266
L+G VGN ++ + V F + H ++ ++ + S+ H CNF K +
Sbjct: 173 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVT 232
Query: 267 DTVNYAMNHEFGDIDQYSIYTPSCIALP 294
+ A ++ Y++Y P +P
Sbjct: 233 NLQEVARIVGNSGLNIYNLYAPCAGGVP 260
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 210/439 (47%), Gaps = 66/439 (15%)
Query: 51 SQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPGCSSVAYGASEEIGPFRIN 110
+Q++GY+ V E+ + F+W E+ + K P++LWLNGGPGCSS+ G E+GP I
Sbjct: 15 TQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIG 72
Query: 111 RNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTS--SNLKDSGDNRTAQDALVFLIRW 168
+ + N YSW+ A ++FL+ P VGFSY+ +S SN +G +D FL +
Sbjct: 73 PDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAG-----KDVYNFLELF 126
Query: 169 MSRFPQY--KYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIINLKGFIVGNAVTD-- 224
+FP+Y K ++F+IAGESYAGHY+P A +I+ ++ NL ++GN +TD
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEIL----SHKDRNFNLTSVLIGNGLTDPL 182
Query: 225 ---NYYDSIGTVTFWWTHSMISDKTYRSIINHCNFSAEKSSKKCDDTVNYAMNHEFGDID 281
NYY+ + + S++ C+ + E S ++C + D
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEE--------CS-AMEDSLERCLGLIESCY-------D 226
Query: 282 QYSIYT--PSCIALPNSTVRPMRL--KNTL-LRRRVSGYDPC--TENYAEKYYNRQEVQK 334
S+++ P+ I N+ + P + +N +R+ G + C T + Y N+ V++
Sbjct: 227 SQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKE 286
Query: 335 ALHANVTGIPYKWTACSDVLINNWKDSEDSVLPTY---KQLIAAGLKIWVFSGDTDSVV- 390
A+ A V + +C+ + N+ + D + P + L+ L I V++GD D +
Sbjct: 287 AVGAEVD----HYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICN 342
Query: 391 --------PVTATRFSLSHLNLPIKTPWYPWYSG--NQVGGWTEVYKGLTFATVRGAGHE 440
V ++ + ++ W + ++V G + YK T+ V GH
Sbjct: 343 WLGNKAWTDVLPWKYDEEFASQKVRN----WTASITDEVAGEVKSYKHFTYLRVFNGGHM 398
Query: 441 VPLFQPRRALILFRSFLAG 459
VP P AL + ++ G
Sbjct: 399 VPFDVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 124/444 (27%), Positives = 207/444 (46%), Gaps = 76/444 (17%)
Query: 51 SQFSGYVTVNENHGRALFYWLTEAASSALKKPLVLWLNGGPGCSSVAYGASEEIGPFRIN 110
+Q++GY+ V E+ + F+W E+ + K P++LWLNGGPGCSS+ G +GP I
Sbjct: 15 TQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIG 72
Query: 111 RNGSSLYLNKYSWSREANILFLESPAGVGFSYTNTS--SNLKDSGDNRTAQDALVFLIRW 168
+ + N YSW+ A ++FL+ P VGFSY+ +S SN +G +D FL +
Sbjct: 73 PDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAG-----KDVYNFLELF 126
Query: 169 MSRFPQY--KYREFYIAGESYAGHYVPQLAKKIIDYNSAYSRPIINLKGFIVGNAVTD-- 224
+FP+Y K ++F+IAG SYAGHY+P A +I+ ++ NL ++GN +TD
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEIL----SHKDRNFNLTSVLIGNGLTDPL 182
Query: 225 ---NYYDSIGTVTFWWTHSMISDKTYRSIINHCNFSAEKSSKKCDDTVNYAMNHEFGDID 281
NYY+ + + S++ C+ + E S ++C + D
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEE--------CS-AMEDSLERCLGLIESCY-------D 226
Query: 282 QYSIYT--PSCIALPNSTVRPMRL--KNTL-LRRRVSGYDPC--TENYAEKYYNRQEVQK 334
S+++ P+ I N+ + P + +N +R+ G + C T + Y N+ V++
Sbjct: 227 SQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKE 286
Query: 335 ALHANVTGIPYKWTACSDVLINNWKDSEDSVLPTY---KQLIAAGLKIWVFSGDTDSVVP 391
A+ A V + +C+ + N+ + D + P + L+ L I V++GD D
Sbjct: 287 AVGAEVD----HYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD---- 338
Query: 392 VTATRFSLSHLNLPIKTPWYPW-----YSGNQVGGWT-----------EVYKGLTFATVR 435
F + L T PW ++ +V WT + YK T+ V
Sbjct: 339 -----FICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVF 393
Query: 436 GAGHEVPLFQPRRALILFRSFLAG 459
GH VP P AL + ++ G
Sbjct: 394 NGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 184/416 (44%), Gaps = 55/416 (13%)
Query: 68 FYW--LTEAASSALKKPLVLWLNGGPGCSSVAYGASEEIGPFRINRNGSSLYLNKYSWSR 125
F+W ++ + +PL++WLNGGPGCSS+ GA E GPFR+N +G LYLN+ SW
Sbjct: 52 FFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWIS 109
Query: 126 EANILFLESPAGVGFSYTNTSSNLKDSGD---NRTAQDA-------LVFLIRWMSRFPQY 175
+ ++LF++ P G GFS KD G N+ +D + FL + FP+
Sbjct: 110 KGDLLFIDQPTGTGFSVEQN----KDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPED 165
Query: 176 KYREFYIAGESYAGHYVPQLAKKIIDYN--SAYSRPIINLKGFIVGNAVTDNYYDSIGTV 233
R+ ++GESYAG Y+P A I+++N S +LK ++GN D S+ +
Sbjct: 166 LTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYL 225
Query: 234 TFWWTHSMI--SDKTYRSIIN-HCNFSAEKSSKKCDDTVNYAMNHEFGDIDQYSIYTPSC 290
F +I S+ ++ + N H N +S D+ +++ ++ YT
Sbjct: 226 PFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHFSYQECENILNLLLSYTRE- 284
Query: 291 IALPNSTVRPMRLKNTLLRRRVSGYDPCTEN------YAEKYYNRQEVQKALHANVTGIP 344
+ T + + N L+ Y C N + K+++ V +LH + I
Sbjct: 285 -SSQKGTADCLNMYNFNLK---DSYPSCGMNWPKDISFVSKFFSTPGVIDSLHLDSDKID 340
Query: 345 YKWTACSDV----LINNWKDSEDSVLPTYKQLIAAGLKIWVFSGDTDSVVPVTATRFSLS 400
+ W C++ L N +LP L+ +G++I +F+GD D + ++
Sbjct: 341 H-WKECTNSVGTKLSNPISKPSIHLLPG---LLESGIEIVLFNGDKDLICNNKGVLDTID 396
Query: 401 HLN------LPIKTPWYPWY-------SGNQVGGWTEVYKGLTFATVRGAGHEVPL 443
+L + W + G+ + + LTF +V A H VP
Sbjct: 397 NLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHMVPF 452
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 317 PCTENYA-EKYYNRQEVQKALHANVTGIPYKWTACSDVLINNWKDSEDSVLPTYKQLIAA 375
PCT A Y N V+KAL N+ +W C+ ++ ++ S+ Y +L+++
Sbjct: 4 PCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 376 -GLKIWVFSGDTDSVVPVTATRFSLSHLNLPIKTPWYPWY-----SGNQVGGWTEVYKGL 429
+I +++GD D + + LN ++ PW SG Q+ G+ + + +
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI 121
Query: 430 TFATVRGAGHEVPLFQPRRALILFRSFL 457
F T++GAGH VP +P A +F FL
Sbjct: 122 AFLTIKGAGHMVPTDKPLAAFTMFSRFL 149
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 247 YRSIINHCNFSAEKSSKKCDDTVNYAMNHEFGDIDQYSIYTPSCIAL 293
Y+ +HC F +K+ D N MN E ++ ++Y P A
Sbjct: 92 YKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAF 138
>pdb|4IC1|A Chain A, Crystal Structure Of Sso0001
pdb|4IC1|B Chain B, Crystal Structure Of Sso0001
pdb|4IC1|C Chain C, Crystal Structure Of Sso0001
pdb|4IC1|D Chain D, Crystal Structure Of Sso0001
pdb|4IC1|F Chain F, Crystal Structure Of Sso0001
pdb|4IC1|G Chain G, Crystal Structure Of Sso0001
pdb|4IC1|H Chain H, Crystal Structure Of Sso0001
pdb|4IC1|I Chain I, Crystal Structure Of Sso0001
pdb|4IC1|J Chain J, Crystal Structure Of Sso0001
pdb|4IC1|K Chain K, Crystal Structure Of Sso0001
Length = 206
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 331 EVQKALHANVTGIPYKWTACSDVLINN----------WKDSEDSVLPTYKQLIAAGLKIW 380
EV+ NV G YK +D +I N D LP + +W
Sbjct: 82 EVETLREINVGGKVYKIKGRADAIIRNDNGKSIVIEIKTSRSDKGLPLIHHKXQLQIYLW 141
Query: 381 VFSGDTDSVVPVTATRFSLSHLNLPI 406
+FS + +V +T R + +N P+
Sbjct: 142 LFSAEKGILVYITPDRIAEYEINEPL 167
>pdb|3JY1|A Chain A, Bacillus Cereus Alkylpurine Dna Glycosylase Alkd Bound To
Dna Containing An Abasic Site (across From C)
Length = 226
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 255 NFSAEKSSKKCDDTVNYAMNHEFGDIDQYSIYTPSCIALPNSTVR----PMRLKNTLLRR 310
+F+A ++ +K + Y NH I TP L ++ P + ++ R
Sbjct: 12 HFTAHQNPEKAEPMARYMKNHFLF----LGIQTPERRQLLKDIIQIHTLPDQKDFQIIIR 67
Query: 311 RVSGYDPCTENYAEKYYNRQEVQKALHANVTGIPYKWTACSDVLINNWKDSEDSVLPTY- 369
+ P E A Q+ +K H N T IP+ ++ +W DS DS++PT+
Sbjct: 68 ELWDL-PEREFQAAALDIMQKYKK--HINETHIPF---LEELIVTKSWWDSVDSIVPTFL 121
Query: 370 -------KQLIAAGLKIWVFSGD 385
+LI+A + W+ S +
Sbjct: 122 GDIFLKHPELISAYIPKWIASDN 144
>pdb|3JXZ|A Chain A, Bacillus Cereus Alkylpurine Dna Glycosylase Alkd Bound To
Dna Containing An Abasic Site (Across From T)
Length = 225
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 255 NFSAEKSSKKCDDTVNYAMNHEFGDIDQYSIYTPSCIALPNSTVR----PMRLKNTLLRR 310
+F+A ++ +K + Y NH I TP L ++ P + ++ R
Sbjct: 11 HFTAHQNPEKAEPMARYMKNHFLF----LGIQTPERRQLLKDIIQIHTLPDQKDFQIIIR 66
Query: 311 RVSGYDPCTENYAEKYYNRQEVQKALHANVTGIPYKWTACSDVLINNWKDSEDSVLPTY- 369
+ P E A Q+ +K H N T IP+ ++ +W DS DS++PT+
Sbjct: 67 ELWDL-PEREFQAAALDIMQKYKK--HINETHIPF---LEELIVTKSWWDSVDSIVPTFL 120
Query: 370 -------KQLIAAGLKIWVFSGD 385
+LI+A + W+ S +
Sbjct: 121 GDIFLKHPELISAYIPKWIASDN 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,332,770
Number of Sequences: 62578
Number of extensions: 623302
Number of successful extensions: 1456
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 22
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)