Query 012069
Match_columns 471
No_of_seqs 179 out of 792
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 2E-135 4E-140 1098.0 43.7 440 20-470 1-447 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 1E-123 2E-128 1032.0 37.9 389 72-471 269-681 (784)
3 PLN02592 ent-copalyl diphospha 100.0 5E-108 1E-112 904.9 36.3 373 72-471 309-722 (800)
4 PF01397 Terpene_synth: Terpen 100.0 6.1E-57 1.3E-61 424.7 15.0 175 30-212 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 2.5E-37 5.4E-42 302.2 16.0 227 243-470 1-228 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 1.2E-33 2.6E-38 278.1 21.2 213 257-470 1-213 (284)
7 cd00687 Terpene_cyclase_nonpla 99.8 2.9E-20 6.3E-25 186.3 12.5 200 264-470 18-219 (303)
8 cd00385 Isoprenoid_Biosyn_C1 I 99.4 4.8E-13 1E-17 125.1 6.9 165 291-470 2-166 (243)
9 cd00867 Trans_IPPS Trans-Isopr 70.9 16 0.00035 35.1 7.5 85 379-469 86-171 (236)
10 PF00494 SQS_PSY: Squalene/phy 40.7 3.6E+02 0.0078 26.4 12.2 127 288-434 7-137 (267)
11 KOG1914 mRNA cleavage and poly 35.3 5.9E+02 0.013 28.9 12.5 158 251-417 223-408 (656)
12 COG3063 PilF Tfp pilus assembl 34.2 3.7E+02 0.008 27.2 9.9 141 54-240 53-206 (250)
13 cd00685 Trans_IPPS_HT Trans-Is 33.3 1.3E+02 0.0028 29.7 6.9 86 378-469 108-194 (259)
14 TIGR03486 cas_csx13_C CRISPR-a 27.8 3.3E+02 0.0072 25.5 7.9 85 327-414 31-126 (152)
15 PF08843 DUF1814: Nucleotidyl 27.8 1.4E+02 0.0031 27.9 5.9 96 299-415 129-233 (233)
16 cd07604 BAR_ASAPs The Bin/Amph 27.2 1.9E+02 0.0041 28.4 6.7 86 46-150 12-100 (215)
17 KOG3951 Uncharacterized conser 26.9 85 0.0018 31.9 4.2 57 149-213 264-320 (321)
18 smart00027 EH Eps15 homology d 26.5 3.7E+02 0.008 22.2 7.8 84 327-416 5-93 (96)
19 COG0864 NikR Predicted transcr 26.5 55 0.0012 30.0 2.6 53 361-426 16-68 (136)
20 TIGR02749 prenyl_cyano solanes 25.4 2.3E+02 0.0049 29.3 7.2 87 378-469 133-219 (322)
21 PF11848 DUF3368: Domain of un 24.0 58 0.0013 24.2 1.9 21 128-148 24-44 (48)
22 PLN02890 geranyl diphosphate s 21.6 2.2E+02 0.0048 30.8 6.5 86 378-469 227-313 (422)
23 KOG2099 Glycogen phosphorylase 20.1 1.2E+02 0.0026 34.3 4.1 36 334-369 381-417 (843)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.7e-135 Score=1098.03 Aligned_cols=440 Identities=53% Similarity=0.918 Sum_probs=417.3
Q ss_pred CCCCCCCCCCCCC-CcccccCCccccchHHHHHHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHHhCcccccHHH
Q 012069 20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENE 95 (471)
Q Consensus 20 r~~a~~~ps~Wgd-~fl~~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~---~~~~~~d~~~~L~lID~LqRLGI~~hFe~E 95 (471)
||+++||||+||| +|+++++... ....+.+++++||++||+||.. .. |++++|+|||+||||||+|||++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E 75 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE 75 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence 7899999999999 6766543322 2226889999999999999986 45 899999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHHhcCcccchhhhhcccccccccccccccchHHHHhHhhhcccc
Q 012069 96 IKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLR 175 (471)
Q Consensus 96 I~~~L~~i~~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~l~ 175 (471)
|+++|++||++|.+..... ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||++
T Consensus 76 I~~~L~~i~~~~~~~~~~~----~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~ 151 (542)
T cd00684 76 IKEILDYIYRYWTERGESN----EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLS 151 (542)
T ss_pred HHHHHHHHHHhhccccccc----CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcC
Confidence 9999999999884321111 479999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHhhc---CCCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCccccHHHHHHHHhhhH
Q 012069 176 VQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (471)
Q Consensus 176 ~~gE~iLdeA~~Ft~~~L~~~~~~---~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn 252 (471)
+|||+|||||++||++||++.+++ ++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||+|||
T Consensus 152 ~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldfn 230 (542)
T cd00684 152 FPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDFN 230 (542)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHHH
Confidence 999999999999999999999986 789999999999999999999999999999999999 9999999999999999
Q ss_pred HhhHhhHHHHHHHHHHHhhcCCCCCCCcchhhHHHHHHHhhccccCCCCchhhHHHHHHHHHHHhhhhhhcccCCHHHHH
Q 012069 253 LLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELK 332 (471)
Q Consensus 253 ~~Q~~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yGTleEL~ 332 (471)
+||++||+||++++|||+++||.++|||+|||++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+
T Consensus 231 ~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~ 310 (542)
T cd00684 231 ILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELE 310 (542)
T ss_pred HHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHhhhcCchhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHh
Q 012069 333 LFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 412 (471)
Q Consensus 333 ~ft~av~RWD~~~~~~Lpeymki~f~al~~~~~ei~~~~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEY 412 (471)
.||+||+|||++++++||+|||+||.+|+++++|+++++.++++.+.++|+++.|+++++||++||+|+++||+||++||
T Consensus 311 ~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEY 390 (542)
T cd00684 311 LFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEY 390 (542)
T ss_pred HHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999555599999999999999999999999999999999999
Q ss_pred HhhhccccchhHHHHHHHhccCCccccHHHhhhccCccHHHHHHhHHHHhcCCcCccC
Q 012069 413 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYK 470 (471)
Q Consensus 413 l~na~iS~~~~~l~~~s~~~mg~~~~t~e~~ewl~~~p~iv~~~~~i~RL~nDi~t~k 470 (471)
|+|+.+|+|+++++++++++||+. +|+++++|+..+|+|+++++.|+||+|||+||+
T Consensus 391 l~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~ 447 (542)
T cd00684 391 MENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYE 447 (542)
T ss_pred HhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhH
Confidence 999999999999999999999999 999999999888999999999999999999986
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.1e-123 Score=1031.96 Aligned_cols=389 Identities=30% Similarity=0.482 Sum_probs=371.6
Q ss_pred chHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHHhcCcccchhhhhcccccc
Q 012069 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEK 151 (471)
Q Consensus 72 d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~ 151 (471)
++++++++||+||||||+|||++||+++|+++|++|.++.... ..|+++|||+|||||||||+||||||++|+|+
T Consensus 269 ~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~----~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~- 343 (784)
T PLN02279 269 DQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEI----FLDLATCALAFRILRLNGYDVSSDPLKQFAED- 343 (784)
T ss_pred cHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCC----CCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-
Confidence 6899999999999999999999999999999999885431111 47999999999999999999999999999966
Q ss_pred ccccccc---ccchHHHHhHhhhcccccCCchHHHHHHHHHHHHHHHHhhc-------CCCchHHHHHHhccCCccCCcc
Q 012069 152 GEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-------LSTPLVDQVEHSLEIPLHRGMP 221 (471)
Q Consensus 152 G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-------~~~~L~~eV~~aL~~P~~~~l~ 221 (471)
+ |++++ .+||+||||||||||+++|||+|||||++||++||++.++. ++++|+++|+|||++|||+++|
T Consensus 344 ~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~ 422 (784)
T PLN02279 344 H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLE 422 (784)
T ss_pred c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCcc
Confidence 5 99998 59999999999999999999999999999999999998874 5788999999999999999999
Q ss_pred hhHHhhhHHhhhcCCcc------------ccHHHHHHHHhhhHHhhHhhHHHHHHHHHHHhhcCCCCCCCcchhhHHHHH
Q 012069 222 RLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECY 289 (471)
Q Consensus 222 Rlear~yI~~Y~~~~~~------------~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~y 289 (471)
|||||+||++|+++ +. +|++||||||+|||+||++||+||++|+|||+++|| .+|||||||+||||
T Consensus 423 RlEaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Y 500 (784)
T PLN02279 423 RLANRRSIENYAVD-DTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCY 500 (784)
T ss_pred HHHHHHHHHHhccc-cchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHH
Confidence 99999999999988 75 899999999999999999999999999999999999 69999999999999
Q ss_pred HHhhccccCCCCchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhH-hhhcCchhHHHHHHHHHHHHHHHH
Q 012069 290 FWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVV-AANELPKYMQVCYFALLDVVKEME 368 (471)
Q Consensus 290 fw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yGTleEL~~ft~av~RWD~~-~~~~Lpeymki~f~al~~~~~ei~ 368 (471)
||++|++||||||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++ +++.||+|||+||++|++++|||+
T Consensus 501 f~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~ 580 (784)
T PLN02279 501 FSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIG 580 (784)
T ss_pred HHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 669999999999999999999999
Q ss_pred HHHHc-cCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHHHHHHhccCCccccHHHhhhcc
Q 012069 369 DKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAI 447 (471)
Q Consensus 369 ~~~~k-~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~~mg~~~~t~e~~ewl~ 447 (471)
.++.+ +|+ ++++|++++|++++++|++||||+++||+||++|||+||.+|+|++++++++++++|+. +|+++++| .
T Consensus 581 ~~~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~-l~eev~e~-~ 657 (784)
T PLN02279 581 DKAFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPK-LSEEVVDS-P 657 (784)
T ss_pred HHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCC-CCHHHHhC-c
Confidence 99876 888 99999999999999999999999999999999999999999999999999999999998 99999999 5
Q ss_pred CccHHHHHHhHHHHhcCCcCccCC
Q 012069 448 SVPKIIRSSSLIARLDDDVHTYKV 471 (471)
Q Consensus 448 ~~p~iv~~~~~i~RL~nDi~t~k~ 471 (471)
++|+|+++++.|+||+|||+||++
T Consensus 658 ~~~~L~~l~s~I~RLlNDI~S~e~ 681 (784)
T PLN02279 658 ELHKLYKLMSTCGRLLNDIRGFKR 681 (784)
T ss_pred chhHHHHHHHHHHHHHHhccccHh
Confidence 999999999999999999999974
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=4.6e-108 Score=904.89 Aligned_cols=373 Identities=29% Similarity=0.427 Sum_probs=344.2
Q ss_pred chHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccC-CCCCCCCCCCCchHHHHHHHHHHHhcCcccchhhhhccccc
Q 012069 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVN-GNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (471)
Q Consensus 72 d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~~~~~-~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~ 150 (471)
+++++|++||+||||||+|||++||+++|+++|++|.+ +++........|+++|||+|||||||||+||||||++|++
T Consensus 309 d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~- 387 (800)
T PLN02592 309 DLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK- 387 (800)
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-
Confidence 78999999999999999999999999999999998854 3221000004799999999999999999999999999987
Q ss_pred cccccccc---ccchHHHHhHhhhcccccCCchHHHHHHHHHHHHHHHHhh--c------CCCchHHHHHHhccCCccCC
Q 012069 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--H------LSTPLVDQVEHSLEIPLHRG 219 (471)
Q Consensus 151 ~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~--~------~~~~L~~eV~~aL~~P~~~~ 219 (471)
+|+|++.+ .+|++|||+||||||+++|||+|||+|++||++||++.+. + ++++|+++|+|||++|||++
T Consensus 388 ~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~ 467 (800)
T PLN02592 388 GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYAS 467 (800)
T ss_pred CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcC
Confidence 79999765 8999999999999999999999999999999999999863 1 36789999999999999999
Q ss_pred cchhHHhhhHHhhhcCCcc-------------ccHHHHHHHHhhhHHhhHhhHHHHHHHHHHHhhcCCCCCCCcchhhHH
Q 012069 220 MPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLV 286 (471)
Q Consensus 220 l~Rlear~yI~~Y~~~~~~-------------~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~l~l~~~L~faRdr~v 286 (471)
+||||||+||++|+++ ++ +|++||||||+|||+||++||+||++|+||||++|| .+|||||||+|
T Consensus 468 l~RlEaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~v 545 (800)
T PLN02592 468 LPRVETRFYIEQYGGE-DDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELL 545 (800)
T ss_pred cchHHHHHHHHHhcCC-cccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHH
Confidence 9999999999999987 54 499999999999999999999999999999999999 59999999999
Q ss_pred HHHHHhhccccCCCCchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHH--------hhhhHhhhcCch------h
Q 012069 287 ECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIE--------RWEVVAANELPK------Y 352 (471)
Q Consensus 287 e~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yGTleEL~~ft~av~--------RWD~~~~~~Lpe------y 352 (471)
|||||++|++||||||.+|++|||+++|+|+|||+||+|||+|||++||++|+ |||.+++++||+ |
T Consensus 546 e~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~ 625 (800)
T PLN02592 546 LAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKT 625 (800)
T ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhH
Confidence 99999999999999999999999999999999999999999999999999997 999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHHHHHHh
Q 012069 353 MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV 431 (471)
Q Consensus 353 mki~f~al~~~~~ei~~~~~k-~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~ 431 (471)
||+||.|||||+|||+.++.+ ||+ ++++|++++|.++|+ +|+++|| +|+|.+.+++++++
T Consensus 626 mki~f~aLy~tineia~~a~~~qGr-~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~ 686 (800)
T PLN02592 626 GEELVGLLLGTLNQLSLDALEAHGR-DISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTIN 686 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHH
Confidence 999999999999999999999 888 999999999999999 6666665 56677888899998
Q ss_pred -ccCCccccHHHhhhccCccHHHHHHhHHHHhcCCcCccCC
Q 012069 432 -GLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKV 471 (471)
Q Consensus 432 -~mg~~~~t~e~~ewl~~~p~iv~~~~~i~RL~nDi~t~k~ 471 (471)
.+|+. +|+|+++ +|++.+++++|.||+||++|+++
T Consensus 687 l~~g~~-lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~ 722 (800)
T PLN02592 687 LTAGRS-LSEELLA----HPQYEQLAQLTNRICYQLGHYKK 722 (800)
T ss_pred HhcCCC-CCHHHcc----chhHHHHHHHHHHHHHhhhHHhh
Confidence 45998 9999976 69999999999999999999874
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=6.1e-57 Score=424.67 Aligned_cols=175 Identities=52% Similarity=0.849 Sum_probs=148.2
Q ss_pred CCCCcccc-----cCCccccchHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhCcccccHHHHHHHHHHHH
Q 012069 30 WGDHFINV-----SSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY 104 (471)
Q Consensus 30 Wgd~fl~~-----~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~ 104 (471)
|||+||+. +++.+...+.+.+++++||++||.||..... |++++|+|||+||||||+|||++||+++|+++|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~---d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYP---DPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSS---HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 99999952 2211233578899999999999999987542 799999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCchHHHHHHHHHHHhcCcccchhhhhcccccccccccccccchHHHHhHhhhcccccCCchHHHH
Q 012069 105 DSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184 (471)
Q Consensus 105 ~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 184 (471)
+.|.+... . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||+||||||+++|||+||||
T Consensus 78 ~~~~~~~~----~-~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 152 (183)
T PF01397_consen 78 RSWDEDNE----E-IDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDE 152 (183)
T ss_dssp HTTTTTSH----T-SSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHH
T ss_pred hhcccccc----c-cCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHH
Confidence 98743210 0 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC---chHHHHHHhc
Q 012069 185 ACEFSRKHLKSLLSHLST---PLVDQVEHSL 212 (471)
Q Consensus 185 A~~Ft~~~L~~~~~~~~~---~L~~eV~~aL 212 (471)
|+.||++||++++++..+ +|+++|+|||
T Consensus 153 A~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 153 ARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 999999999999986543 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=2.5e-37 Score=302.20 Aligned_cols=227 Identities=29% Similarity=0.398 Sum_probs=212.7
Q ss_pred HHHHHHhhhHHhhHhhHHHHHHHHHHHhhcCCCCCCCcchhhHHHHHHHhhccccCCCCchhhHHHHHHHHHHHhhhhhh
Q 012069 243 ILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIY 322 (471)
Q Consensus 243 lLelAKlDFn~~Q~~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~y 322 (471)
+|+|||+|||.||++||+|++++++||+++|+..+.+.+|+|++.++||.++.++.|..+..|+++||.++++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999888888999999999999999999998888999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhhhhHhhhcCchhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHhHh
Q 012069 323 DVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWF 401 (471)
Q Consensus 323 D~yGTleEL~~ft~av~RWD~~~~~~Lpeymki~f~al~~~~~ei~~~~~k-~~~~~~~~~lke~w~~l~~ayl~EAkW~ 401 (471)
|..|+.++++.|+++++||++...+.+|++++.++.++.++++++...+.+ +++.++++++++.|.+++++++.|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888999999999999999999999999988 4442478999999999999999999999
Q ss_pred cCCCCCChHHhHhhhccccchhHHHHHHHhccCCccccHHHhhhccCccHHHHHHhHHHHhcCCcCccC
Q 012069 402 HAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYK 470 (471)
Q Consensus 402 ~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~~mg~~~~t~e~~ewl~~~p~iv~~~~~i~RL~nDi~t~k 470 (471)
.+|++||++||++....|+|+++++....++||.. .+++..+++.+.|.+.++++.+++|+|||.|++
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~ 228 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFA-LGELPPEVLEHPPMLRRLAADIIRLVNDLYSYK 228 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSC-HTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCc-cccccHHHHHhchHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999999999999877 787788888888889999999999999999874
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=1.2e-33 Score=278.11 Aligned_cols=213 Identities=52% Similarity=0.954 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCcchhhHHHHHHHhhccccCCCCchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHH
Q 012069 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (471)
Q Consensus 257 ~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yGTleEL~~ft~ 336 (471)
.||+|++++++||+++||....+++|.+..++|+|+++++|+|+.+..|+++||.++++.++||.||.+|+.+|+..|++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999976666999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHhhhcCchhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhh
Q 012069 337 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENS 416 (471)
Q Consensus 337 av~RWD~~~~~~Lpeymki~f~al~~~~~ei~~~~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na 416 (471)
+++||++...+.+|++++.++.+++++.+++...+.++++......+++.|.++++++..||+|+.+|++||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 99999999999999999999999999999999999883333789999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHhccCCccccHHHhhhccCccHHHHHHhHHHHhcCCcCccC
Q 012069 417 TMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYK 470 (471)
Q Consensus 417 ~iS~~~~~l~~~s~~~mg~~~~t~e~~ewl~~~p~iv~~~~~i~RL~nDi~t~k 470 (471)
..|+|.++.+..+.+++|.. +|++.+.+....+++++.++.+++|+||+.||+
T Consensus 161 ~~~~g~~~~~~l~~~~~g~~-l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~ 213 (284)
T cd00868 161 RVSIGYPPLLALSFLGMGDI-LPEEAFEWLPSYPKLVRASSTIGRLLNDIASYE 213 (284)
T ss_pred eehhhHHHHHHHHHHHcCCC-CCHHHHHHhhhhHHHHHHHHHHHHHhccchHHH
Confidence 99999999999999999998 998677777889999999999999999999985
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.83 E-value=2.9e-20 Score=186.31 Aligned_cols=200 Identities=16% Similarity=0.075 Sum_probs=169.7
Q ss_pred HHHHHHhhcCCCCCCCcchhhHHHHHHHhhccccCCCCchhhHHHH-HHHHHHHhhhhhhcccC-CHHHHHHHHHHHHhh
Q 012069 264 EISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMT-KIIAIASVIDDIYDVYG-TLEELKLFTHAIERW 341 (471)
Q Consensus 264 ~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~a-K~~~l~tviDD~yD~yG-TleEL~~ft~av~RW 341 (471)
+...|.++.|+ -.-+.+|+|.++++|+.++.++.|+.+..|+.++ +.++++.++||.||..| +.++++.+++.+.++
T Consensus 18 ~~~~w~~~~~l-~~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEML-IPSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCC-CCcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhc
Confidence 36678888866 2344899999999999999999999999999555 99999999999999984 999999999888887
Q ss_pred hhHhhhcCchhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccc
Q 012069 342 EVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSG 421 (471)
Q Consensus 342 D~~~~~~Lpeymki~f~al~~~~~ei~~~~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~ 421 (471)
.......-|.....+..++.++...+...+.. .....+++.|.+++.+++.|++|+.+|++||++||+++...|+|
T Consensus 97 ~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~~----~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g 172 (303)
T cd00687 97 LRGDGLDSPDDATPLEFGLADLWRRTLARMSA----EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIG 172 (303)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhccc
Confidence 55322111478888899999888877655432 45688999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccCCccccHHHhhhccCccHHHHHHhHHHHhcCCcCccC
Q 012069 422 YPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYK 470 (471)
Q Consensus 422 ~~~l~~~s~~~mg~~~~t~e~~ewl~~~p~iv~~~~~i~RL~nDi~t~k 470 (471)
..+++..+.+++|.. ++.++.+. ....+++++++.+++|+|||.||+
T Consensus 173 ~~~~~~l~~~~~g~~-lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~ 219 (303)
T cd00687 173 ADPCLGLSEFIGGPE-VPAAVRLD-PVMRALEALASDAIALVNDIYSYE 219 (303)
T ss_pred ccccHHHHHHhcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999899999987 88887664 334569999999999999999986
No 8
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.39 E-value=4.8e-13 Score=125.10 Aligned_cols=165 Identities=26% Similarity=0.323 Sum_probs=133.2
Q ss_pred HhhccccCCCCchhhHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHhhhhHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 012069 291 WILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDK 370 (471)
Q Consensus 291 w~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yGTleEL~~ft~av~RWD~~~~~~Lpeymki~f~al~~~~~ei~~~ 370 (471)
|+++++|+|+++..|..++++..++.++||++|..++..+.......+ .....|.++...+..+.+.++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 567889999999999999999999999999999999888776664443 34567888888888888888888754
Q ss_pred HHccCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHHHHHHhccCCccccHHHhhhccCcc
Q 012069 371 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVP 450 (471)
Q Consensus 371 ~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~~mg~~~~t~e~~ewl~~~p 450 (471)
.. ......+.+.|.+++.++..|+.|..+ +.||++||+.....++| +++.....++++.. .+. ..+.....
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~-~~~~~~~~~~~~~~-~~~--~~~~~~~~ 146 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTA-GLVGALCLLGAGLS-GGE--AELLEALR 146 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHH-HHHHHHHHHHHHHh-CCC--HHHHHHHH
Confidence 22 256789999999999999999999877 89999999999999984 44444455555543 333 44445567
Q ss_pred HHHHHHhHHHHhcCCcCccC
Q 012069 451 KIIRSSSLIARLDDDVHTYK 470 (471)
Q Consensus 451 ~iv~~~~~i~RL~nDi~t~k 470 (471)
++...++.+++|.||+.++.
T Consensus 147 ~~~~~~g~~~ql~nDl~~~~ 166 (243)
T cd00385 147 KLGRALGLAFQLTNDLLDYE 166 (243)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999875
No 9
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=70.94 E-value=16 Score=35.05 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhcc-ccchhHHHHHHHhccCCccccHHHhhhccCccHHHHHHh
Q 012069 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTM-SSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (471)
Q Consensus 379 ~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~i-S~~~~~l~~~s~~~mg~~~~t~e~~ewl~~~p~iv~~~~ 457 (471)
......+...+++.+...+..|..+ ..||+++|++...- |.++....+......+.. +.+..+.+ .++-+..+
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~lG 159 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA--DDEQAEAL---KDYGRALG 159 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc--CHHHHHHH---HHHHHHHH
Confidence 4566678889999999999999654 57999999999988 665544433333333332 33333333 46788899
Q ss_pred HHHHhcCCcCcc
Q 012069 458 LIARLDDDVHTY 469 (471)
Q Consensus 458 ~i~RL~nDi~t~ 469 (471)
+..-+.||+..+
T Consensus 160 ~a~Qi~dd~~D~ 171 (236)
T cd00867 160 LAFQLTDDLLDV 171 (236)
T ss_pred HHHHHHHHhccc
Confidence 999999998764
No 10
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=40.67 E-value=3.6e+02 Score=26.37 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=78.0
Q ss_pred HHHHhhccccCCCCchhhHHHHHHHHHHHhhhhhhcccCCHHH----HHHHHHHHHhhhhHhhhcCchhHHHHHHHHHHH
Q 012069 288 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEE----LKLFTHAIERWEVVAANELPKYMQVCYFALLDV 363 (471)
Q Consensus 288 ~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yGTleE----L~~ft~av~RWD~~~~~~Lpeymki~f~al~~~ 363 (471)
.||++. .+-| ...|..+.=+-.+.-.+||+=|......+ |+-+-++++..--+..+..|...-.+..+|.++
T Consensus 7 sf~~a~--~~lP--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~ 82 (267)
T PF00494_consen 7 SFYLAS--LLLP--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADL 82 (267)
T ss_dssp HHHHHH--TTS---HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHH
T ss_pred cHHHHH--HHCC--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHH
Confidence 344443 3445 56788888889999999999999885443 344444444432222224455556666666655
Q ss_pred HHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHHHHHHhccC
Q 012069 364 VKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLE 434 (471)
Q Consensus 364 ~~ei~~~~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~~mg 434 (471)
+... +--++...+++.++-... ...-.||++|+..-+.-+.|....++...++..
T Consensus 83 ~~~~-------------~l~~~~l~~li~~~~~dl---~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~ 137 (267)
T PF00494_consen 83 VRRY-------------GLPREPLLELIDGMEMDL---EFTPYETFADLERYCYYVAGSVGLLLLQLLGAH 137 (267)
T ss_dssp HCCS-------------HHHHHHHHHHHHHHHHCT---T-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSS
T ss_pred HHHH-------------hhhHHHHHHHHHHhcccc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4321 133455667777777443 335578999999999888888777777777663
No 11
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=35.31 E-value=5.9e+02 Score=28.93 Aligned_cols=158 Identities=21% Similarity=0.274 Sum_probs=96.1
Q ss_pred hHHhhHhhHHHHHHHHHH--HhhcCCCCC---CC--cchhhHHHHHHHhh-ccccCCCCchhhHHHHHHHHHHHhhhhhh
Q 012069 251 FNLLQALHRIELSEISRW--WKDIDFATK---LP--FARDRLVECYFWIL-GVYFEPKYSTTRKFMTKIIAIASVIDDIY 322 (471)
Q Consensus 251 Fn~~Q~~hq~EL~~lsrW--wk~l~l~~~---L~--faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~y 322 (471)
+-+=|.--..|.+++++| |-+..-... +. ---.|++..|=-++ .+.|-|+ +|--.+..+.-+-|++
T Consensus 223 ~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe------iWy~~s~yl~~~s~l~ 296 (656)
T KOG1914|consen 223 PAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE------IWYDYSMYLIEISDLL 296 (656)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHhhHHH
Confidence 335556667889999999 544332222 32 22348887775543 4556664 6667778888888999
Q ss_pred cccCCHHHHHHHHHHHHhhhhHhhhcCchhHHHHHHHHHH------------HHHHHHHHHHc-cCC-c---ch--hhHH
Q 012069 323 DVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLD------------VVKEMEDKLVN-KEP-L---CC--MYYA 383 (471)
Q Consensus 323 D~yGTleEL~~ft~av~RWD~~~~~~Lpeymki~f~al~~------------~~~ei~~~~~k-~~~-~---~~--~~~l 383 (471)
+.+|..++-.+||+-...-=..+++.+..--+.+|-++-+ -+.++..++.+ +.. . +| ++++
T Consensus 297 ~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~i 376 (656)
T KOG1914|consen 297 TEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFI 376 (656)
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHH
Confidence 9999999999999766555445666665555555555532 23344445444 211 1 11 3333
Q ss_pred HHH-HHHHHHHHHHHHhHhcCCCCCChHHhHhhhc
Q 012069 384 KEA-IKGLVKAYFVEAKWFHAKYVPTFEECVENST 417 (471)
Q Consensus 384 ke~-w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~ 417 (471)
+.+ =.+.+|+-+++|. ..++.| -+-|..+|.
T Consensus 377 rR~eGlkaaR~iF~kaR--~~~r~~-hhVfVa~A~ 408 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAR--EDKRTR-HHVFVAAAL 408 (656)
T ss_pred HHhhhHHHHHHHHHHHh--hccCCc-chhhHHHHH
Confidence 332 2467888888886 556666 455555553
No 12
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.16 E-value=3.7e+02 Score=27.17 Aligned_cols=141 Identities=19% Similarity=0.180 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhc-ccccccchHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHH
Q 012069 54 TLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132 (471)
Q Consensus 54 ~Lk~eVr~~l~~-~~~~~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~DL~~~AL~FRLL 132 (471)
.-|..+++.|.. .+ .....+-+-..-|++|---+=.++-..+|..-.
T Consensus 53 ~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p---------------------------- 100 (250)
T COG3063 53 QAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAP---------------------------- 100 (250)
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----------------------------
Confidence 345566666654 33 556677777777777755555444444441110
Q ss_pred HhcCcccchhhhhcccccccccccccccchHHHHhHhhhcccccCCc--hHHHHHHHHH---------HHHHHHHhhcC-
Q 012069 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGE--NILEEACEFS---------RKHLKSLLSHL- 200 (471)
Q Consensus 133 RqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE--~iLdeA~~Ft---------~~~L~~~~~~~- 200 (471)
.+| ||+||| |.|-|+...=..+|--+=+|..--.-|| +.++.+.-.+ +.+|+..+...
T Consensus 101 -~~G-----dVLNNY----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 101 -NNG-----DVLNNY----GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred -Ccc-----chhhhh----hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 113 899999 8899888888888888888887766566 3555554433 34555555422
Q ss_pred CCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCcccc
Q 012069 201 STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRN 240 (471)
Q Consensus 201 ~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~~n 240 (471)
+.+.+ .-.+-.+.+..=.+..||.|++.|.+. -.-+
T Consensus 171 ~~~~~---~l~~a~~~~~~~~y~~Ar~~~~~~~~~-~~~~ 206 (250)
T COG3063 171 QFPPA---LLELARLHYKAGDYAPARLYLERYQQR-GGAQ 206 (250)
T ss_pred CCChH---HHHHHHHHHhcccchHHHHHHHHHHhc-cccc
Confidence 11111 112333445566778999999999887 4444
No 13
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=33.33 E-value=1.3e+02 Score=29.73 Aligned_cols=86 Identities=17% Similarity=0.095 Sum_probs=57.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHHHHHHhcc-CCccccHHHhhhccCccHHHHHH
Q 012069 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSS 456 (471)
Q Consensus 378 ~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~~m-g~~~~t~e~~ewl~~~p~iv~~~ 456 (471)
.++..+.+....++.+-+.+-.|... ..||.++|++...--+|.....++...++ +. .+.+..+-+ -++-+..
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~--~~~~~~~~l---~~~g~~l 181 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG--ADEEEAEAL---KRFGRNL 181 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 35666777888899998889998654 67999999999877776654433322221 11 123333332 4677888
Q ss_pred hHHHHhcCCcCcc
Q 012069 457 SLIARLDDDVHTY 469 (471)
Q Consensus 457 ~~i~RL~nDi~t~ 469 (471)
++..-+.||+..+
T Consensus 182 G~afQi~DD~ld~ 194 (259)
T cd00685 182 GLAFQIQDDILDL 194 (259)
T ss_pred HHHHHHHHHhhcc
Confidence 8888899997654
No 14
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=27.82 E-value=3.3e+02 Score=25.52 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhhhhHhhhcCchhHHHHHHHHHHHHHHHHHHHHccC---CcchhhHHHH-HHHHHHHHHHHHH----
Q 012069 327 TLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKE---PLCCMYYAKE-AIKGLVKAYFVEA---- 398 (471)
Q Consensus 327 TleEL~~ft~av~RWD~~~~~~Lpeymki~f~al~~~~~ei~~~~~k~~---~~~~~~~lke-~w~~l~~ayl~EA---- 398 (471)
--+.|..+++.++.||..+-. --++.|-.|+-.++..|.......| .+..+..-.+ .-..+.+|+-.|+
T Consensus 31 er~gL~~M~~~~~~~~~e~eq---~fiqa~HeAlr~~~~qI~~~tk~~g~~~~~~~~e~e~erir~~l~r~kt~~~fr~~ 107 (152)
T TIGR03486 31 ERDELNKMIENSEIWDSEAEQ---WFVQSFHEALRRIYAKIASHTKRRGSETLGDRWKRENERIYSSLARAKTSEQFRTF 107 (152)
T ss_pred HHHhHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 344577788888888743211 1356667777777777777666522 2122222222 2234444444331
Q ss_pred ---hHhcCCCCCChHHhHh
Q 012069 399 ---KWFHAKYVPTFEECVE 414 (471)
Q Consensus 399 ---kW~~~g~~Pt~eEYl~ 414 (471)
=|.+.|-.||++|+-.
T Consensus 108 i~df~srAg~~~~Lqe~~~ 126 (152)
T TIGR03486 108 IADLWARAGRIPSLQEHWG 126 (152)
T ss_pred HHHHHHHccCCcchHHHHH
Confidence 2778899999988743
No 15
>PF08843 DUF1814: Nucleotidyl transferase of unknown function (DUF1814); InterPro: IPR014942 This large group of proteins are largely uncharacterised. Some are annotated as abortive infective proteins but support for this annotation could not be found.
Probab=27.78 E-value=1.4e+02 Score=27.90 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=54.3
Q ss_pred CCCchhhHHHHHHHHHHHh---------hhhhhcccCCHHHHHHHHHHHHhhhhHhhhcCchhHHHHHHHHHHHHHHHHH
Q 012069 299 PKYSTTRKFMTKIIAIASV---------IDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMED 369 (471)
Q Consensus 299 P~~s~~R~~~aK~~~l~tv---------iDD~yD~yGTleEL~~ft~av~RWD~~~~~~Lpeymki~f~al~~~~~ei~~ 369 (471)
|-+|...++..|+.++..- .-|+||.+-= ...+...+.....+..++...+..-..
T Consensus 129 ~v~s~~~~~a~Kl~a~~~r~~~~~~~~r~RDl~Dl~~L---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (233)
T PF08843_consen 129 PVYSLEEILAEKLHALLDRSEGDPPRRRARDLYDLYYL---------------AQPISRDELDLEELREAFLAKFDRRGR 193 (233)
T ss_pred eeCCHHHHHHHHHHHHHhcccccccccCCCCHHHHHHH---------------HhhccccccCHHHHHHHHHHHHHhccc
Confidence 7889999999999998872 3688886521 111222233344444444333333221
Q ss_pred HHHccCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhh
Q 012069 370 KLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 415 (471)
Q Consensus 370 ~~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~n 415 (471)
....... ... ++.|.....++..--. ..+..|+|++++++
T Consensus 194 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~ 233 (233)
T PF08843_consen 194 ELLPRLL--FLQ--REFWQRDYEAMRDALL--YAGDLPDFDDALAR 233 (233)
T ss_pred ccccccc--ccc--HHHHHHHHHHhHhhhh--ccCCCcCHHHHhcC
Confidence 1111111 111 5667666666664444 36788999999875
No 16
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=27.21 E-value=1.9e+02 Score=28.39 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccc-hHHHHHHHHHHHHhCcccc--cHHHHHHHHHHHHhhccCCCCCCCCCCCCch
Q 012069 46 TEVEKRFETLKAEIEKLLVSNNTAWKT-LEEIVAIVNQLQRLGVAYH--FENEIKEALQTIYDSHVNGNCDVNYDHNNDL 122 (471)
Q Consensus 46 ~~~~~~~e~Lk~eVr~~l~~~~~~~~d-~~~~L~lID~LqRLGI~~h--Fe~EI~~~L~~i~~~~~~~~~~~~~~~~~DL 122 (471)
+....+.++++.-+|.|..+.. + .-....+++.|+.||=..- .+.+|..+|...- .-+
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~g~----~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~---------------~~l 72 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNSGL----AHVENELQFAEALEKLGSKALSREEEDLGAAFLKFS---------------VFT 72 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHH---------------HHH
Confidence 3456788888889988887643 3 4468899999999993221 2335777764321 224
Q ss_pred HHHHHHHHHHHhcCcccchhhhhccccc
Q 012069 123 YIVALRFRLLRQHGYKVSADIFKKFRDE 150 (471)
Q Consensus 123 ~~~AL~FRLLRqhGy~VS~DvF~~Fkd~ 150 (471)
..++=.+-.|++|=-++-...+.+|..+
T Consensus 73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 73 KELAALFKNLMQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566778887767767778888755
No 17
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.92 E-value=85 Score=31.90 Aligned_cols=57 Identities=28% Similarity=0.353 Sum_probs=40.2
Q ss_pred ccccccccccccchHHHHhHhhhcccccCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHhcc
Q 012069 149 DEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLE 213 (471)
Q Consensus 149 d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~L~~eV~~aL~ 213 (471)
+.+|-|...-+-|+||-..|-++-- ... =+-|=.|+.||++||. +.+-+++|++-|.
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~-~e~LLnaLRfTTKHlN------desTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQ-SECLLNALRFTTKHLN------DESTPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chh-hHHHHHHHHHHHhhcC------CCCChHHHHHHhc
Confidence 5678888778889999999988643 222 2456789999999995 2334566666553
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=26.54 E-value=3.7e+02 Score=22.17 Aligned_cols=84 Identities=4% Similarity=-0.014 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhhhhHhhhcCc-hhHHHHHHHHH---HHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhHhc
Q 012069 327 TLEELKLFTHAIERWEVVAANELP-KYMQVCYFALL---DVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFH 402 (471)
Q Consensus 327 TleEL~~ft~av~RWD~~~~~~Lp-eymki~f~al~---~~~~ei~~~~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~ 402 (471)
|.+|+..+.++++..|.+.-..++ +.++-+++.+= ..+++|-..+..++. ..+. ..+.+..+..-++|..
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~-g~I~-----~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDND-GELD-----KDEFALAMHLIYRKLN 78 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC-CCcC-----HHHHHHHHHHHHHHHc
Confidence 455666666666666654444442 34444444421 112222222222222 2343 3466777778888887
Q ss_pred CCCCC-ChHHhHhhh
Q 012069 403 AKYVP-TFEECVENS 416 (471)
Q Consensus 403 ~g~~P-t~eEYl~na 416 (471)
..-+| .+.-||.++
T Consensus 79 g~~~~~~~~~~~~~~ 93 (96)
T smart00027 79 GYPIPASLPPSLIPP 93 (96)
T ss_pred CCCCCccCCHhhcCC
Confidence 66677 677777654
No 19
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=26.51 E-value=55 Score=30.00 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHH
Q 012069 361 LDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLA 426 (471)
Q Consensus 361 ~~~~~ei~~~~~k~~~~~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~ 426 (471)
++.++++..+-... ++- +...+.+|.|++|.+|.... |-+..|.++..+....
T Consensus 16 l~elD~~i~~rg~~---sRS----E~IrdAir~yl~e~~~~~~~------~~~~~G~i~vvy~h~~ 68 (136)
T COG0864 16 LEELDELIEERGYS---SRS----ELIRDALREYLEEYRWLEDI------EGERAGVITVVYDHEK 68 (136)
T ss_pred HHHHHHHHHHcCCC---cHH----HHHHHHHHHHHHHhhhhccc------cceeEEEEEEEEcccc
Confidence 66666665532221 222 56678899999999998765 5566777776665543
No 20
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=25.41 E-value=2.3e+02 Score=29.33 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=56.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHHHHHHhccCCccccHHHhhhccCccHHHHHHh
Q 012069 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (471)
Q Consensus 378 ~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~~mg~~~~t~e~~ewl~~~p~iv~~~~ 457 (471)
.++..+.+...++|.+-+.+..|... ..+|.++|++...--+|.-.-.++..-.+--. .+++..+-+ -++-+..+
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag-~~~~~~~~l---~~~G~~lG 207 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSD-VPSQVANDL---YEYGKHLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHHH
Confidence 45667777888899988888877543 35899999998766665443222111111112 345444443 45677889
Q ss_pred HHHHhcCCcCcc
Q 012069 458 LIARLDDDVHTY 469 (471)
Q Consensus 458 ~i~RL~nDi~t~ 469 (471)
+..-+.||+-.+
T Consensus 208 ~aFQi~DDild~ 219 (322)
T TIGR02749 208 LAFQVVDDILDF 219 (322)
T ss_pred HHHHHHHHhccC
Confidence 999999998764
No 21
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.01 E-value=58 Score=24.17 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=16.2
Q ss_pred HHHHHHhcCcccchhhhhccc
Q 012069 128 RFRLLRQHGYKVSADIFKKFR 148 (471)
Q Consensus 128 ~FRLLRqhGy~VS~DvF~~Fk 148 (471)
.+.-|+++||.+|+++++.+.
T Consensus 24 ~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 24 LLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHHcCcccCHHHHHHHH
Confidence 344558889999999988765
No 22
>PLN02890 geranyl diphosphate synthase
Probab=21.64 E-value=2.2e+02 Score=30.82 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=59.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHhcCCCCCChHHhHhhhccccchhHHHHHHHhc-cCCccccHHHhhhccCccHHHHHH
Q 012069 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 456 (471)
Q Consensus 378 ~~~~~lke~w~~l~~ayl~EAkW~~~g~~Pt~eEYl~na~iS~~~~~l~~~s~~~-mg~~~~t~e~~ewl~~~p~iv~~~ 456 (471)
.++..+-++...+|.+-+.+..|.. ...+|.++|++...--+|...-.++..-. ++. .+++..+.+ -++-+..
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag--a~~~~~~~l---~~fG~~l 300 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAG--QTAEVAVLA---FEYGRNL 300 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 4677788888999999999999864 45689999998766555544332221111 222 355655554 3677888
Q ss_pred hHHHHhcCCcCcc
Q 012069 457 SLIARLDDDVHTY 469 (471)
Q Consensus 457 ~~i~RL~nDi~t~ 469 (471)
++..-+.||+-.+
T Consensus 301 GlAFQI~DDiLD~ 313 (422)
T PLN02890 301 GLAFQLIDDVLDF 313 (422)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998654
No 23
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=20.10 E-value=1.2e+02 Score=34.31 Aligned_cols=36 Identities=22% Similarity=0.498 Sum_probs=27.2
Q ss_pred HHHHHHhhhhHhhhcC-chhHHHHHHHHHHHHHHHHH
Q 012069 334 FTHAIERWEVVAANEL-PKYMQVCYFALLDVVKEMED 369 (471)
Q Consensus 334 ft~av~RWD~~~~~~L-peymki~f~al~~~~~ei~~ 369 (471)
+-+|++||-.+.++.| |.+|+|+|.-=...++.+..
T Consensus 381 lpEALErWp~~L~e~LLPRHleIIy~In~~~l~~i~~ 417 (843)
T KOG2099|consen 381 LPEALERWPVSLMEKLLPRHLEIIYEINQRFLQTVAA 417 (843)
T ss_pred cHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999866 99999999754444444443
Done!