Query 012070
Match_columns 471
No_of_seqs 139 out of 225
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3871 Cell adhesion complex 100.0 1E-153 2E-158 1150.1 30.9 411 6-420 10-433 (449)
2 PF05291 Bystin: Bystin; Inte 100.0 8E-131 2E-135 969.6 29.8 292 129-420 1-297 (301)
3 PF11510 FA_FANCE: Fanconi Ana 98.7 1.1E-06 2.3E-11 87.6 17.4 229 165-397 7-247 (263)
4 cd07439 FANCE_c-term Fanconi a 98.0 0.00043 9.3E-09 68.9 17.6 226 165-396 2-239 (254)
5 KOG1832 HIV-1 Vpr-binding prot 83.6 1.1 2.5E-05 52.3 4.0 17 116-132 1487-1503(1516)
6 PF04931 DNA_pol_phi: DNA poly 82.5 0.71 1.5E-05 52.2 1.9 15 164-178 735-749 (784)
7 cd07313 terB_like_2 tellurium 77.2 21 0.00045 29.8 8.6 74 313-394 4-79 (104)
8 PF10446 DUF2457: Protein of u 69.1 4.3 9.4E-05 44.1 3.3 15 397-411 422-436 (458)
9 PF11116 DUF2624: Protein of u 62.7 31 0.00067 30.0 6.6 53 369-421 18-70 (85)
10 PF10446 DUF2457: Protein of u 62.7 6.3 0.00014 42.9 3.0 29 170-200 206-234 (458)
11 PF04147 Nop14: Nop14-like fam 57.9 64 0.0014 37.6 10.1 137 173-320 427-593 (840)
12 PF07240 Turandot: Stress-indu 57.0 12 0.00026 32.5 3.2 30 368-397 12-43 (85)
13 COG4103 Uncharacterized protei 55.9 74 0.0016 30.3 8.3 82 306-395 26-109 (148)
14 KOG2153 Protein involved in th 53.1 69 0.0015 36.9 9.0 130 280-409 301-452 (704)
15 COG3189 Uncharacterized conser 49.6 24 0.00051 32.4 4.0 38 363-404 58-95 (117)
16 TIGR01565 homeo_ZF_HD homeobox 46.2 20 0.00044 28.8 2.7 52 377-430 3-56 (58)
17 PF08158 NUC130_3NT: NUC130/3N 46.1 19 0.00041 28.4 2.5 33 388-421 18-50 (52)
18 PF06524 NOA36: NOA36 protein; 44.0 13 0.00027 38.5 1.5 21 46-66 223-243 (314)
19 KOG2147 Nucleolar protein invo 42.2 2.1E+02 0.0045 33.7 10.7 84 217-310 467-553 (823)
20 KOG0943 Predicted ubiquitin-pr 40.0 17 0.00038 44.5 2.0 40 232-273 2058-2101(3015)
21 cd07311 terB_like_1 tellurium 37.5 1.1E+02 0.0023 28.7 6.4 61 362-429 21-81 (150)
22 PF04931 DNA_pol_phi: DNA poly 33.4 25 0.00054 40.2 2.0 17 168-184 732-748 (784)
23 PTZ00415 transmission-blocking 30.9 26 0.00056 44.3 1.6 12 6-17 91-102 (2849)
24 cd00159 RhoGAP RhoGAP: GTPase- 30.7 3.7E+02 0.008 23.6 8.6 106 177-308 31-149 (169)
25 PRK13434 F0F1 ATP synthase sub 28.6 3E+02 0.0066 25.9 8.0 95 306-412 50-147 (184)
26 KOG1832 HIV-1 Vpr-binding prot 27.1 20 0.00044 42.7 -0.1 15 48-62 1388-1402(1516)
27 PF08349 DUF1722: Protein of u 26.4 4.5E+02 0.0097 23.1 10.6 100 321-421 5-105 (117)
28 PF09026 CENP-B_dimeris: Centr 25.6 38 0.00082 30.4 1.3 10 165-174 64-73 (101)
29 PRK13430 F0F1 ATP synthase sub 24.8 3.2E+02 0.0069 27.6 7.8 86 305-402 145-231 (271)
30 PF04147 Nop14: Nop14-like fam 24.2 7.4E+02 0.016 29.2 11.6 85 185-271 414-501 (840)
31 KOG1617 CDP-alcohol phosphatid 24.1 69 0.0015 32.6 3.0 40 173-215 163-202 (243)
32 KOG4557 Origin recognition com 24.1 88 0.0019 31.9 3.7 56 170-237 105-172 (262)
33 KOG1991 Nuclear transport rece 23.2 53 0.0012 39.2 2.3 11 166-176 986-996 (1010)
34 PF12719 Cnd3: Nuclear condens 22.6 2.6E+02 0.0057 27.9 6.8 71 274-358 26-97 (298)
35 smart00777 Mad3_BUB1_I Mad3/BU 21.9 1.8E+02 0.004 26.5 5.0 79 342-441 21-104 (125)
No 1
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=100.00 E-value=1e-153 Score=1150.12 Aligned_cols=411 Identities=53% Similarity=0.822 Sum_probs=355.9
Q ss_pred hcccCCCCCCCCCCCCCCcccccccc--chhhhhh--hcccccccCchhhHHHHHHHHHHHHHHhhhccCCcccccchhh
Q 012070 6 KRERFQNPQPFLPSNDDDKSVASSKK--RSKAAKH--HQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVF 81 (471)
Q Consensus 6 ~k~rh~pL~~qi~~~~~~~~~~~~~~--r~k~~~~--~~~~e~~vd~k~SrKIL~~Ar~Qq~E~e~e~~~~~~~~~~~~~ 81 (471)
++.+|+||.+||. +++ ++++++ |+|.+++ ..++++|||+++|+|||++||+||.|+++|+.....+.+++..
T Consensus 10 ~~~~~~pl~kdl~---a~~-va~~k~~~r~k~k~~~e~~e~d~~ida~~S~KIL~~Ak~Qq~E~~~Ee~~~~~~~s~~~~ 85 (449)
T KOG3871|consen 10 RKQRHAPLLKDLA---AGQ-VAKKKKLARSKVKKHDEANEEDGFIDAKASRKILQLAKEQQLELAEEENAESSRNSAFEA 85 (449)
T ss_pred chhccCchhhhhH---HHh-hhhhhhhhhhhhhhhhhhccccccccchhhHHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence 4567999999998 333 555554 5555444 3445689999999999999999999998877654333323321
Q ss_pred hhhhhhhc-cCCCCcccccccCCCCcccc--ccCCcccccChHHHHHHHHHccCCCCCCcChHHHHHHHHhhhhhhcc--
Q 012070 82 AEEEQSKR-RVEEDEDDIDDFGGFNETQS--QFGNYEEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIA-- 156 (471)
Q Consensus 82 ~~~~~~~~-~~~dd~d~~dd~~~~~~~~~--~~~~ee~eIDeeDe~~l~~Fm~~~~~~~~tLADiImeKI~eke~~~~-- 156 (471)
..+-..-+ +++.+++++||.++++.+++ +++++.+|||++|++.|++|+++++++.+||+|+||+||+||+++..
T Consensus 86 ~~~~~~~~ee~~i~~~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r~l~k~a~~~~tL~diIm~ki~ekead~~~~ 165 (449)
T KOG3871|consen 86 RFTTASYGEEDEIEEEDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFERFLKKSADFNYTLADIIMAKIREKEADVETE 165 (449)
T ss_pred hccccccccccccccchhcccccccccccchhhhhhhhhcCcchHHHHHHHhccccchhccHHHHHHHHHHHHHhhHHhh
Confidence 11100000 11112222233333322221 12224699999999999999999999999999999999999998732
Q ss_pred ----cCCCCCCCCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHhhccCCCh
Q 012070 157 ----SGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA 232 (471)
Q Consensus 157 ----~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~L~nWEeiL~lT~Pe~WSp~A~y~aTriF~Snl~~ 232 (471)
+.++.+++.|||+|+++|++||.+||+||||||||||||||+|.|||+|||+|+|++|||||||||||||+|||++
T Consensus 166 ~~~~~~~e~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKiIp~l~nWediLylT~Pe~Ws~~amyqaTRiF~SnL~~ 245 (449)
T KOG3871|consen 166 QSDPDENEFPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKIIPSLRNWEDILYLTEPEEWSPAAMYQATRIFASNLKP 245 (449)
T ss_pred hcccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhcccccccHhHheeecCccccCHHHHHHHHHHHHhcCCH
Confidence 2334567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhcCCchHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHH
Q 012070 233 KKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS 312 (471)
Q Consensus 233 ~~aqrFy~~VLLPrvRedI~e~KKLn~HLY~ALkKAlyKP~AFfKGIL~PLc~sg~CTlrEA~IigSVL~K~SIPvlHsa 312 (471)
+|||||||+||||||||||+++||||||||+|||||||||+|||||||||||++||||+|||+||||||+||||||+|||
T Consensus 246 ~~~QrFynlvLLpRvRddi~e~kkLnyhLY~AlkKaLyKPsAffkG~l~PL~esgtCtlREAvI~gSvl~K~siPvlHSs 325 (449)
T KOG3871|consen 246 KMAQRFYNLVLLPRVRDDIREYKKLNYHLYQALKKALYKPSAFFKGILFPLVESGTCTLREAVIIGSVLAKVSIPVLHSS 325 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhhHHHHHHHHHHhcCcHHHhccchhhhccCCCchHHHHHHHHHHHhhCcchhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012070 313 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 392 (471)
Q Consensus 313 aAL~kl~em~ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQrYk~dlt~eqkeaLl~ 392 (471)
|||++||+|+|||+||+|||+||||||||||||||+||+|||||+++.|.|||+||||||+||||||+||++|||++|++
T Consensus 326 aallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~d~R~lpVlwHqslLtf~QRYK~di~~eqkdaLle 405 (449)
T KOG3871|consen 326 AALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRTDERVLPVLWHQSLLTFAQRYKNDITQEQKDALLE 405 (449)
T ss_pred HHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChhhHHHHHhhhhccCcc
Q 012070 393 LLKKQKHKLVRLSFLMPIIVSLLFVGSS 420 (471)
Q Consensus 393 Ll~~~~H~~ItpEIrREL~~s~~~~~~~ 420 (471)
|+|.|+|+.|||||||||.+|..+.+.-
T Consensus 406 llr~~~H~~i~PEIrREL~~~~~r~~~~ 433 (449)
T KOG3871|consen 406 LLRLQGHYLIGPEIRRELLASASRDEED 433 (449)
T ss_pred HHHhcCCCcCCHHHHHHHHhccccCccc
Confidence 9999999999999999999999888763
No 2
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=100.00 E-value=7.6e-131 Score=969.59 Aligned_cols=292 Identities=59% Similarity=0.994 Sum_probs=282.0
Q ss_pred HccCCCCCCcChHHHHHHHHhhhhhhcc----cCCCCCC-CCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH
Q 012070 129 FLSKDAGPQVTLADLIIKKIKENDANIA----SGETRPL-PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE 203 (471)
Q Consensus 129 Fm~~~~~~~~tLADiImeKI~eke~~~~----~~~~~~~-~~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~L~nWE 203 (471)
||++++++++||||+||+||+|+|++.+ ++++.+. ..+||||++||++||.+||+||||||||||||||+|+|||
T Consensus 1 fm~~~~~~~~~Lad~I~~Ki~e~e~~~~~~~~~~~~~~~~~~l~~kVvevY~~vG~~Ls~YrSGkLPKafKiiP~l~nWE 80 (301)
T PF05291_consen 1 FMNEEAGQRRTLADIIMEKIKEKEAEQQGQQSDEEGKPEPEELDPKVVEVYTKVGELLSRYRSGKLPKAFKIIPSLPNWE 80 (301)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhccccCccCCCCCcccCCHHHHHHHHHHHHHHhhcCCCCCCcCeecccCchhHH
Confidence 8999999999999999999999999842 2223333 4899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCchhHHHHhHHhhccCCChHHHHHHHHHhhhHHHHHhhhhhcCCchHHHHHHHHhhcCchhhhhhhhccc
Q 012070 204 QVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPL 283 (471)
Q Consensus 204 eiL~lT~Pe~WSp~A~y~aTriF~Snl~~~~aqrFy~~VLLPrvRedI~e~KKLn~HLY~ALkKAlyKP~AFfKGIL~PL 283 (471)
||||+|+|++|||||||+|||||+||||+++|||||++||||||||||++|||||||||+|||||+|||+||||||||||
T Consensus 81 eiL~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~~KKLn~hly~ALkKalyKP~AffkGil~PL 160 (301)
T PF05291_consen 81 EILYLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAENKKLNYHLYMALKKALYKPAAFFKGILLPL 160 (301)
T ss_pred HHHHhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCc
Q 012070 284 CKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 363 (471)
Q Consensus 284 c~sg~CTlrEA~IigSVL~K~SIPvlHsaaAL~kl~em~ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~L 363 (471)
|++||||+|||+||||||+||||||+||||||++||+|+|+|++|+|||+||||||||||||||+||+||+||.++.++|
T Consensus 161 ~~sg~CTlrEA~Ii~svl~k~sipvlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~l 240 (301)
T PF05291_consen 161 CESGTCTLREAVIIGSVLAKVSIPVLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRKL 240 (301)
T ss_pred hcCCCccHHHHHHHHHHHHhcCCCchhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcc
Q 012070 364 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSS 420 (471)
Q Consensus 364 PVlWHQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~ 420 (471)
||+||||||+||||||+|||+|||++|++|+++|+||+|||||||||.+|..++..-
T Consensus 241 PVlWHq~lL~F~qrYk~di~~eqk~~L~~ll~~~~H~~ItpEIrreL~~~~~r~~~~ 297 (301)
T PF05291_consen 241 PVLWHQSLLVFVQRYKNDITEEQKEALLELLRKQKHPQITPEIRRELLASRSRGVEI 297 (301)
T ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999998877643
No 3
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=98.67 E-value=1.1e-06 Score=87.58 Aligned_cols=229 Identities=16% Similarity=0.224 Sum_probs=155.1
Q ss_pred CCChHHHHHHHHHHHHHhhccc------CCCCccccccCCCc--hHHHHHhhcCCCCCchhHHHHhHHhh---ccCCChH
Q 012070 165 KLDESFINLYKGVGEFLSKYTA------GKMPKAFKHIPSTQ--MWEQVLYLTEPEKWTPNAMFQATRIF---SSNLNAK 233 (471)
Q Consensus 165 ~l~pkVvevY~~vG~~Ls~YrS------GKLPKaFKiiP~L~--nWEeiL~lT~Pe~WSp~A~y~aTriF---~Snl~~~ 233 (471)
+||..+.+..-++-++|..-.. |..|..++++=..+ .-|-+-..-+=.+||..++++..+.+ ..+++-.
T Consensus 7 ~lp~~~~~~~~~lk~ll~~~~e~~~~~~~~~~~~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~Ls~dls~~ 86 (263)
T PF11510_consen 7 ELPKHIQDQVPRLKELLETESEGLEGLEDAPPSELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCSSLLALSPDLSHS 86 (263)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-----------HHHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHHHHHH-SS---HH
T ss_pred hCcHHHHHHHHHHHHHHHHhhhhcccccCCChHHHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHccCcccchh
Confidence 4666666666666666655444 44677777775432 44555555555789999999999977 4577888
Q ss_pred HHHHHHHHhhhHHHHHhhhhhcCCchHHHHHHHHhhcC-chhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHH
Q 012070 234 KAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS 312 (471)
Q Consensus 234 ~aqrFy~~VLLPrvRedI~e~KKLn~HLY~ALkKAlyK-P~AFfKGIL~PLc~sg~CTlrEA~IigSVL~K~SIPvlHsa 312 (471)
.|--|....+||+++.- +..-.-+|..|+.-..-+ |.++..|+++|+...+.-..-.+-+|..++++-+++..|-.
T Consensus 87 ~a~~l~~sl~LpkilsL---~~~ASR~L~sal~~f~k~~p~~~~~all~PlL~~~~~g~~Q~eLl~rlvk~~~l~p~~~~ 163 (263)
T PF11510_consen 87 NATVLLRSLFLPKILSL---EEPASRLLVSALTSFCKKYPRPVCEALLVPLLQAPGLGPPQCELLCRLVKKECLEPDHRL 163 (263)
T ss_dssp HHHHHHHHHHHHHHHH----SS---HHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT--HHHHHHHHHHHH-TTS-HHHHH
T ss_pred hHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHH
Confidence 89999999999999987 556778888888766655 99999999999887665667789999999988899999999
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012070 313 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 392 (471)
Q Consensus 313 aAL~kl~em~ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQrYk~dlt~eqkeaLl~ 392 (471)
..+-.+.+.+|+-.+..++..++++|-.|+-..++.++.-+..-...- .=-+.+-+-+|+|+..|...+++.||..|-.
T Consensus 164 l~l~~~L~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~-skSlkFakLlLtvltKy~~~it~~~~~~L~~ 242 (263)
T PF11510_consen 164 LLLRQILELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQF-SKSLKFAKLLLTVLTKYQSQITEAHKLSLAE 242 (263)
T ss_dssp HHHHHHHHS---HHHHHHHHHHHTT-----HHHHHHHHHHHH---------SHHHHHHHHHHHHHTGGG--HHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhh-hcchHHHHHHHHHHHHcchhccHHHHHHHHH
Confidence 888899999999999999999999999999999998888775432211 1146799999999999999999999999988
Q ss_pred HHhhC
Q 012070 393 LLKKQ 397 (471)
Q Consensus 393 Ll~~~ 397 (471)
.+...
T Consensus 243 ~l~~n 247 (263)
T PF11510_consen 243 ALELN 247 (263)
T ss_dssp HH-SS
T ss_pred HHHhc
Confidence 87644
No 4
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=97.99 E-value=0.00043 Score=68.93 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=173.7
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH-----HHHhhcCCCCCchhHHHHhHHhhccCC---ChHHHH
Q 012070 165 KLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE-----QVLYLTEPEKWTPNAMFQATRIFSSNL---NAKKAE 236 (471)
Q Consensus 165 ~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~L~nWE-----eiL~lT~Pe~WSp~A~y~aTriF~Snl---~~~~aq 236 (471)
.+++.+.++-.++-++|..|..+. |-++-++-.+.-|. -+...-+.++=+...+....+.|.+.. +...+-
T Consensus 2 e~~~~i~~~~~~ikeLl~~~~~~~-~~~~~~L~~l~~~~~~~~~~lc~~L~~~~~~d~~~~~Lcs~lL~~~~~~s~~~~~ 80 (254)
T cd07439 2 ELPSVIQEVLEDIKELLLQEGEWL-PSSPDELQFLHSCSPSQMEVLCSQLQLSSLSDQTLLLLCSSLLPLSPDLSLANAV 80 (254)
T ss_pred cchHHHHHHHHHHHHHHHhhccCc-CChHHHHHHHccCCHHHHHHHHHHhccCCcccHHHHHHHHHHhccCCccCcccHH
Confidence 367778888888888888888765 55544444444442 233344444455556666677777763 777799
Q ss_pred HHHHHhhhHHHHHhhhhhcCCchHHHHHHHHhhc-CchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHHHHH
Q 012070 237 RFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLY-KPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 315 (471)
Q Consensus 237 rFy~~VLLPrvRedI~e~KKLn~HLY~ALkKAly-KP~AFfKGIL~PLc~sg~CTlrEA~IigSVL~K~SIPvlHsaaAL 315 (471)
.|...++||+++.-= ..-.-+|+-|+.--.- .|.++..++++||.+.+.-+.-.+-+|..++..+- ++.|....+
T Consensus 81 ~~~~~l~LpKl~~l~---~~aSR~L~~al~~f~~r~~~~~ceall~PLl~~~~~~~~q~ell~rlike~~-~~~~~~l~~ 156 (254)
T cd07439 81 VFTRHLLLPKLLSLN---ESASRALVAALASFAKRYPRPFCEALLRPLLQCPHPGPFQAELLCRLVKECF-EPDAVLLLL 156 (254)
T ss_pred HHHHHHHhhhhhccC---cchhHHHHHHHHHHHHhCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-cHHHHHHHH
Confidence 999999999998632 4445778887765544 49999999999999877557777788999998887 778888888
Q ss_pred HHHhccc---CCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012070 316 LKLAEME---YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 392 (471)
Q Consensus 316 ~kl~em~---ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQrYk~dlt~eqkeaLl~ 392 (471)
.++..-+ |+-.+-..+..+|+++-.|.-..++.+|.....-...-.. -+.+-+-++.|+..|...+++.++..|..
T Consensus 157 ~q~L~~~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~sk-SlkFa~lll~~itky~~~~~~~~~~~L~~ 235 (254)
T cd07439 157 HQILISPNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSK-SLKFAKLLLAVITKYGPQMSPAHKQSLSE 235 (254)
T ss_pred HHHHccccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHccHhhcHHHHHHHHH
Confidence 8887666 9999999999999999999999999999888665543221 45789999999999999999999999998
Q ss_pred HHhh
Q 012070 393 LLKK 396 (471)
Q Consensus 393 Ll~~ 396 (471)
.+..
T Consensus 236 ~~~~ 239 (254)
T cd07439 236 ALER 239 (254)
T ss_pred HHHh
Confidence 8763
No 5
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.57 E-value=1.1 Score=52.27 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=14.4
Q ss_pred cccChHHHHHHHHHccC
Q 012070 116 EEIDEDDERLLEAFLSK 132 (471)
Q Consensus 116 ~eIDeeDe~~l~~Fm~~ 132 (471)
...|+||+..++-||+.
T Consensus 1487 ~D~Dee~~~~~~d~~ss 1503 (1516)
T KOG1832|consen 1487 EDEDEEDDGEMQDFMSS 1503 (1516)
T ss_pred cccchhhhhhhhcccCC
Confidence 47788999999999887
No 6
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=82.50 E-value=0.71 Score=52.25 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=10.5
Q ss_pred CCCChHHHHHHHHHH
Q 012070 164 PKLDESFINLYKGVG 178 (471)
Q Consensus 164 ~~l~pkVvevY~~vG 178 (471)
..||+...++|+.-.
T Consensus 735 ~~lD~~La~~Fk~r~ 749 (784)
T PF04931_consen 735 MALDEQLAAIFKERK 749 (784)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888886543
No 7
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.20 E-value=21 Score=29.76 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=56.0
Q ss_pred HHHHHHhccc--CCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHH
Q 012070 313 VALLKLAEME--YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDL 390 (471)
Q Consensus 313 aAL~kl~em~--ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQrYk~dlt~eqkeaL 390 (471)
+-|.++|..+ ++-.--=.++.++...|.|+-...+.+..+|-....+.. .+-.|++..+..+++++|..+
T Consensus 4 ~Ll~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~r~~~ 75 (104)
T cd07313 4 ALLVEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAP--------DLYEFTSLIKEHFDYEERLEL 75 (104)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHhCCHHHHHHH
Confidence 3445555554 566666678889999999999999999999988776554 244678888888889999888
Q ss_pred HHHH
Q 012070 391 RILL 394 (471)
Q Consensus 391 l~Ll 394 (471)
++.+
T Consensus 76 l~~L 79 (104)
T cd07313 76 VEAL 79 (104)
T ss_pred HHHH
Confidence 7765
No 8
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=69.08 E-value=4.3 Score=44.12 Aligned_cols=15 Identities=0% Similarity=-0.283 Sum_probs=11.5
Q ss_pred CCCCCCChhhHHHHH
Q 012070 397 QKHKLVRLSFLMPII 411 (471)
Q Consensus 397 ~~H~~ItpEIrREL~ 411 (471)
++-+.-+.|=.|||=
T Consensus 422 rp~PG~GAERMrELG 436 (458)
T PF10446_consen 422 RPAPGKGAERMRELG 436 (458)
T ss_pred CCCCCchHHHHHHHH
Confidence 667778888888874
No 9
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=62.73 E-value=31 Score=29.97 Aligned_cols=53 Identities=11% Similarity=0.271 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcch
Q 012070 369 QSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSSD 421 (471)
Q Consensus 369 QsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~~ 421 (471)
.-||-+++.|.-.||.+|-+.+..++|.+++-..-++-|..|+..+...-|..
T Consensus 18 ~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ 70 (85)
T PF11116_consen 18 KELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQ 70 (85)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHH
Confidence 35889999999999999999999999999999999999999999999888876
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=62.73 E-value=6.3 Score=42.91 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccccCCCc
Q 012070 170 FINLYKGVGEFLSKYTAGKMPKAFKHIPSTQ 200 (471)
Q Consensus 170 VvevY~~vG~~Ls~YrSGKLPKaFKiiP~L~ 200 (471)
+-.+|--+-.-=.+-|.=.+|. -|=|+++
T Consensus 206 LE~AY~Scle~Rr~~K~~~iPQ--DIDPSFP 234 (458)
T PF10446_consen 206 LEAAYISCLEARRREKHIPIPQ--DIDPSFP 234 (458)
T ss_pred HHHHHHHHHHHHHHcCCCCCCC--CCCCCCC
Confidence 3445655444433333333443 3446555
No 11
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=57.93 E-value=64 Score=37.63 Aligned_cols=137 Identities=17% Similarity=0.260 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcccCCCCcccccc-----CCCc-------------hHHHHHhhcCCC-CCchhHHHHhHHhhc--cCCC
Q 012070 173 LYKGVGEFLSKYTAGKMPKAFKHI-----PSTQ-------------MWEQVLYLTEPE-KWTPNAMFQATRIFS--SNLN 231 (471)
Q Consensus 173 vY~~vG~~Ls~YrSGKLPKaFKii-----P~L~-------------nWEeiL~lT~Pe-~WSp~A~y~aTriF~--Snl~ 231 (471)
-|...-.+|+.|.....|.+++-| |+|. -|+-++++..+. .=.+..+-..+++.. +...
T Consensus 427 s~eel~~lL~~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~ 506 (840)
T PF04147_consen 427 SHEELLELLDGYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKY 506 (840)
T ss_pred CHHHHHHHHhcCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777655 5542 367777887766 333444555555332 2223
Q ss_pred hHHHHHHHHHhhhHHHHHhhhhh---------cCCchHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHh
Q 012070 232 AKKAERFYKLVLLPRIRDDIRKN---------KKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIE 302 (471)
Q Consensus 232 ~~~aqrFy~~VLLPrvRedI~e~---------KKLn~HLY~ALkKAlyKP~AFfKGIL~PLc~sg~CTlrEA~IigSVL~ 302 (471)
|..+-.+|..+|...-.. +... =.+.-=+|-.|.-.+|=-.-|+.-++-|- .+.||.+|.
T Consensus 507 p~~~a~~~r~~L~~~~~~-~~~~~l~~~~~~~P~l~~Lvllklv~~lFPTSD~~HpVVTPa----------lllm~~~L~ 575 (840)
T PF04147_consen 507 PEEAAECFREVLKEMQKR-FRKGALKPKERSWPSLSDLVLLKLVGTLFPTSDFRHPVVTPA----------LLLMSEYLS 575 (840)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhhcccccCCCCCChhHHHHHHHHHHhcCcccccCcchhHH----------HHHHHHHHh
Confidence 333444444444322111 1110 01122345555555555555555554443 256888888
Q ss_pred ccCCCcccHHHHHHHHhc
Q 012070 303 KISIPMLHSSVALLKLAE 320 (471)
Q Consensus 303 K~SIPvlHsaaAL~kl~e 320 (471)
+|.|-.++-.+.=+-||.
T Consensus 576 q~~v~s~~di~~GlfL~~ 593 (840)
T PF04147_consen 576 QCRVRSLRDIASGLFLCT 593 (840)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 888887765555444443
No 12
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=57.01 E-value=12 Score=32.48 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhh--cCHHHHHHHHHHHhhC
Q 012070 368 HQSLLAFVQRYKNE--LQKEDKDDLRILLKKQ 397 (471)
Q Consensus 368 HQsLL~FvQrYk~d--lt~eqkeaLl~Ll~~~ 397 (471)
-|.|+.|.+||... |++++++.+-+.++.+
T Consensus 12 i~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y 43 (85)
T PF07240_consen 12 IQELIAFYEKYSPRLPLTPQDRQRIDRFIRRY 43 (85)
T ss_pred HHHHHHHHHHcCccCCCCHHHHHHHHHHHHHH
Confidence 47899999999999 9999999999998864
No 13
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.92 E-value=74 Score=30.32 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=62.6
Q ss_pred CCcccHHHHHHHHhcccC--CchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcC
Q 012070 306 IPMLHSSVALLKLAEMEY--CGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQ 383 (471)
Q Consensus 306 IPvlHsaaAL~kl~em~y--sg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQrYk~dlt 383 (471)
=|.+-+++-|+.+++-+- +.+--.=.|.|+.-.|.+|-.-+|+|+.|=-.|..+.- .|-.|.-.-+.+|+
T Consensus 26 DP~lAa~~Llf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~--------d~y~fts~l~r~Ld 97 (148)
T COG4103 26 DPRLAAAALLFHVMEADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAI--------DLYSFTSVLKRHLD 97 (148)
T ss_pred CHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHhcC
Confidence 466655555555555543 33444567889999999999999999999988887654 45788889999999
Q ss_pred HHHHHHHHHHHh
Q 012070 384 KEDKDDLRILLK 395 (471)
Q Consensus 384 ~eqkeaLl~Ll~ 395 (471)
++||-.|..++=
T Consensus 98 ~e~R~eli~~mw 109 (148)
T COG4103 98 EEQRLELIGLMW 109 (148)
T ss_pred HHHHHHHHHHHH
Confidence 999999987763
No 14
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.15 E-value=69 Score=36.87 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=80.8
Q ss_pred hcccccCCCcchhHHH--------HHHHHHhccCCCcc----cHHHHHHHHhcccCCchHHHHHHHHHHhhc-cCcHHHH
Q 012070 280 LFPLCKSGTCNLREAV--------IIGSVIEKISIPML----HSSVALLKLAEMEYCGTTSYFIKLLLEKKY-GLPYRVV 346 (471)
Q Consensus 280 L~PLc~sg~CTlrEA~--------IigSVL~K~SIPvl----HsaaAL~kl~em~ysg~~SiFirvLLdKKY-aLPyrvI 346 (471)
++-+|-.--|++-+|+ |+..++...+-|-- -+.+++-.+++=|--|..|+++-.+++.-| ..=|.|+
T Consensus 301 l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~ 380 (704)
T KOG2153|consen 301 LAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVL 380 (704)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccch
Confidence 3344544457777777 67777777766622 223556666777776777887766665443 3446677
Q ss_pred HHHHHHHHhhhccCCCcchH--H--HHHHHHHHHHhhhhcCHHHHHHHHHHHhhC-----CCCCCChhhHHH
Q 012070 347 DAIVAHFMRFLEDTRVMPVI--W--HQSLLAFVQRYKNELQKEDKDDLRILLKKQ-----KHKLVRLSFLMP 409 (471)
Q Consensus 347 DalV~hFlrF~~~~~~LPVl--W--HQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~-----~H~~ItpEIrRE 409 (471)
-.+.+-|+.-+-+....+-- | .|...-|-+.=+..++.-||.+=++.-+.+ .-...++|+++-
T Consensus 381 ~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea~e~aeek~k 452 (704)
T KOG2153|consen 381 PDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEAEESAEEKMK 452 (704)
T ss_pred hhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhccccHHHHHH
Confidence 77888887766544433433 3 467777777777778888888776644433 233566666553
No 15
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=49.59 E-value=24 Score=32.38 Aligned_cols=38 Identities=34% Similarity=0.585 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHhhCCCCCCCh
Q 012070 363 MPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVRL 404 (471)
Q Consensus 363 LPVlWHQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H~~Itp 404 (471)
-|..|+ .|.+||..+|+...-.+|.+|+..-.|..+|.
T Consensus 58 dp~~w~----~F~~rY~~EL~~~~~~~l~~L~~~~~~~~lTL 95 (117)
T COG3189 58 DPKKWD----EFRERYRAELNAQDAQALEDLLDIASHGPLTL 95 (117)
T ss_pred CHHHHH----HHHHHHHHHHhcccHHHHHHHHHHHcCCCeEE
Confidence 366787 69999999997766668888887777777764
No 16
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=46.21 E-value=20 Score=28.79 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=36.7
Q ss_pred HhhhhcCHHHHHHHHHHHhhCCC--CCCChhhHHHHHhhhhccCcchhhHHHHHhh
Q 012070 377 RYKNELQKEDKDDLRILLKKQKH--KLVRLSFLMPIIVSLLFVGSSDLHKYLFQQN 430 (471)
Q Consensus 377 rYk~dlt~eqkeaLl~Ll~~~~H--~~ItpEIrREL~~s~~~~~~~~~~~~~~~~~ 430 (471)
|.+.-+|.+|++.|.+.....+- +.++.+.|.+|...+ -+.. ..-|.-|+.|
T Consensus 3 R~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l-gl~~-~vvKVWfqN~ 56 (58)
T TIGR01565 3 RRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI-GVTR-KVFKVWMHNN 56 (58)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh-CCCH-HHeeeecccC
Confidence 56788999999999999875433 246788899999887 3332 3345566655
No 17
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=46.11 E-value=19 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHhhhhccCcch
Q 012070 388 DDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSSD 421 (471)
Q Consensus 388 eaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~~ 421 (471)
+.|.+|++ ++|..+.||.|+-++.||+-.-.++
T Consensus 18 ~~L~~lL~-~~~~~L~p~lR~~lv~aLiLLRnK~ 50 (52)
T PF08158_consen 18 QELIDLLR-NHHTVLDPDLRMKLVKALILLRNKD 50 (52)
T ss_pred HHHHHHHH-hccccCCHHHHHHHHHHHHHHHccC
Confidence 46888887 6788999999999999998654443
No 18
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=43.98 E-value=13 Score=38.55 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=15.9
Q ss_pred cCchhhHHHHHHHHHHHHHHh
Q 012070 46 ISSGISSKILKEAMIQQKEVL 66 (471)
Q Consensus 46 vd~k~SrKIL~~Ar~Qq~E~e 66 (471)
-|=.||-|..+-+|+.+.+..
T Consensus 223 kdLSmStR~hkyGRQ~~~~~~ 243 (314)
T PF06524_consen 223 KDLSMSTRSHKYGRQGQADED 243 (314)
T ss_pred ccceeeeecchhccccCCCcC
Confidence 356788888888888887654
No 19
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=42.18 E-value=2.1e+02 Score=33.71 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=44.2
Q ss_pred hHHHHhHHhhccCCChHHHHHHHHHhhhHHHHHhhhhhcCCchHHHHHHHHhhcCchhhhh--hhhcccccCCCcchhHH
Q 012070 217 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNK--GILFPLCKSGTCNLREA 294 (471)
Q Consensus 217 ~A~y~aTriF~Snl~~~~aqrFy~~VLLPrvRedI~e~KKLn~HLY~ALkKAlyKP~AFfK--GIL~PLc~sg~CTlrEA 294 (471)
..+|..+.+|...++ .=...+||.++++.-++.|--|--.|-.|.-.+ ||+ |+|||-.....--..=|
T Consensus 467 ~~L~~l~q~~pe~~~-----~~~~~~ll~~~~e~~e~~k~k~~~~~psl~~Lv-----~f~l~g~LFptSDf~HpVVtPa 536 (823)
T KOG2147|consen 467 AHLISLAQMFPEIAS-----IVRCVRLLERIHEKGEQIKQKNHPVSPSLDDLV-----FFKLTGLLFPTSDFRHPVVTPA 536 (823)
T ss_pred HHHHHHHHhhhHHhh-----hhHHHHHHHHHHHHHHHhcccCccCCCCcchhh-----hhhhhcccccccccccccccHH
Confidence 356666666655322 222334788888877777744444444444333 344 45888665543333333
Q ss_pred HH-HHHHHhccCCCccc
Q 012070 295 VI-IGSVIEKISIPMLH 310 (471)
Q Consensus 295 ~I-igSVL~K~SIPvlH 310 (471)
.| ++-+|++|+|-.+.
T Consensus 537 lllm~e~L~~~p~~Sl~ 553 (823)
T KOG2147|consen 537 LLLMSEALSQSPIASLQ 553 (823)
T ss_pred HHHHHHHHHhCcchhHH
Confidence 33 33455555555443
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=39.99 E-value=17 Score=44.46 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhhHHHHHh--h--hhhcCCchHHHHHHHHhhcCch
Q 012070 232 AKKAERFYKLVLLPRIRDD--I--RKNKKLHFALYQALKKSLYKPA 273 (471)
Q Consensus 232 ~~~aqrFy~~VLLPrvRed--I--~e~KKLn~HLY~ALkKAlyKP~ 273 (471)
+-.|||.|.-+|-...|+. + ++.-|+||- ....||+..|+
T Consensus 2058 ~L~AqrlfgdilndafR~mgrmfa~eEAkinf~--E~~ekall~pA 2101 (3015)
T KOG0943|consen 2058 PLHAQRLFGDILNDAFREMGRMFAREEAKINFL--EGREKALLLPA 2101 (3015)
T ss_pred cchHhhhhhHHHHHHHHHHHhhhhhhhhhhhhh--hhhhhhhcccC
Confidence 4468999999999999988 3 566777764 55667766654
No 21
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=37.46 E-value=1.1e+02 Score=28.66 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=51.7
Q ss_pred CcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcchhhHHHHHh
Q 012070 362 VMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSSDLHKYLFQQ 429 (471)
Q Consensus 362 ~LPVlWHQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~~~~~~~~~~ 429 (471)
.-|--|-.+||+.+.- ...+|+.+++.+..++.. + .++++-++++... .+..++-.|+|+.
T Consensus 21 ~~~~~~~~~Ll~iAkA-DG~Vse~Ei~~~~~~m~~--~-~L~~e~~~~aie~---~~~~~L~~~~~~~ 81 (150)
T cd07311 21 QDKLAYLKALLVCAKG-DGVISPEERDWAIGYAAA--R-GGDADMVEELKEY---TADEDLEEVDFRS 81 (150)
T ss_pred ccHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH--c-CCCHHHHHHHHHh---CccccHHHHHHHH
Confidence 3467899999999944 788999999999999984 3 8999999999988 6777778888875
No 22
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=33.42 E-value=25 Score=40.17 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHhhc
Q 012070 168 ESFINLYKGVGEFLSKY 184 (471)
Q Consensus 168 pkVvevY~~vG~~Ls~Y 184 (471)
..+.++=..++.+.+.-
T Consensus 732 e~m~~lD~~La~~Fk~r 748 (784)
T PF04931_consen 732 EQMMALDEQLAAIFKER 748 (784)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555554444
No 23
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=30.88 E-value=26 Score=44.30 Aligned_cols=12 Identities=8% Similarity=-0.274 Sum_probs=6.5
Q ss_pred hcccCCCCCCCC
Q 012070 6 KRERFQNPQPFL 17 (471)
Q Consensus 6 ~k~rh~pL~~qi 17 (471)
-|+|..|.++.=
T Consensus 91 ~~~~~~~~~~~~ 102 (2849)
T PTZ00415 91 IKQRTCPFHKEG 102 (2849)
T ss_pred eecccCcccccc
Confidence 455555655544
No 24
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=30.75 E-value=3.7e+02 Score=23.55 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=64.2
Q ss_pred HHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHhhccCCCh-----HHHHHHHHHh-------hh
Q 012070 177 VGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA-----KKAERFYKLV-------LL 244 (471)
Q Consensus 177 vG~~Ls~YrSGKLPKaFKiiP~L~nWEeiL~lT~Pe~WSp~A~y~aTriF~Snl~~-----~~aqrFy~~V-------LL 244 (471)
+..+...+.+|..+. .+..|+++.+-.+-|.|..+|++ ...++|.+.. -.
T Consensus 31 ~~~l~~~~~~~~~~~------------------~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~ 92 (169)
T cd00159 31 IEELKKKFDRGEDID------------------DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERI 92 (169)
T ss_pred HHHHHHHHhcCCCCc------------------cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHH
Confidence 555667777777654 57889999999999999999865 5566666653 44
Q ss_pred HHHHHhhhhhcCCchHHHHHHHHhhcCchhhhhhhhcccccCCCcch-hHHHHHHHHHhccCCCc
Q 012070 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNL-REAVIIGSVIEKISIPM 308 (471)
Q Consensus 245 PrvRedI~e~KKLn~HLY~ALkKAlyKP~AFfKGIL~PLc~sg~CTl-rEA~IigSVL~K~SIPv 308 (471)
..++.-|..=-+.|.++...|..-+++ |.- -.+...+|. .=|+++|-.|-+.+.+.
T Consensus 93 ~~~~~~i~~Lp~~~~~~L~~l~~~l~~-------v~~-~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 93 EALKELLKSLPPENRDLLKYLLKLLHK-------ISQ-NSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHH-------HHh-hccCCCCCHHHHHHHHccccCCCCCcc
Confidence 455555554444445555554443332 211 001122333 34667777777777665
No 25
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=28.57 E-value=3e+02 Score=25.87 Aligned_cols=95 Identities=16% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCcccHHHHHHHHhcccCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCC-cchHHHHHHHHHHHHhhhhcCH
Q 012070 306 IPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRV-MPVIWHQSLLAFVQRYKNELQK 384 (471)
Q Consensus 306 IPvlHsaaAL~kl~em~ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~-LPVlWHQsLL~FvQrYk~dlt~ 384 (471)
||.-.-...|.+++.-..+..+.=||++|++++- ...+..++..|.+..++.+. .-+. + .....||+
T Consensus 50 i~~~~K~~~l~~~~~~~~~~~~~nfl~lL~e~~R---~~~l~~I~~~f~~l~~~~~~~~~~~-----V----~sA~~Ls~ 117 (184)
T PRK13434 50 VSPEEKEQTLAKNLRGKISDITLNFLGVLLNKGR---FIYLPEIQKDFTVELDKKKGRVRAQ-----I----VSYPSLEP 117 (184)
T ss_pred CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHcCeEEEE-----E----EEcCCCCH
Confidence 3433333444455443445556679999999875 35577777777766543211 0000 0 01236999
Q ss_pred HHHHHHHHHHhhCCCCC--CChhhHHHHHh
Q 012070 385 EDKDDLRILLKKQKHKL--VRLSFLMPIIV 412 (471)
Q Consensus 385 eqkeaLl~Ll~~~~H~~--ItpEIrREL~~ 412 (471)
+|++.|.+.+.++.... ++.+|=..|+.
T Consensus 118 ~q~~~l~~~L~k~~g~~v~l~~~vDpsLIG 147 (184)
T PRK13434 118 AQVDKLGSILSEKFKSEFILEVSEDKNLLG 147 (184)
T ss_pred HHHHHHHHHHHHHHCCEeEEEeeeChHHcC
Confidence 99999999998765443 33344444443
No 26
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.08 E-value=20 Score=42.65 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHHHH
Q 012070 48 SGISSKILKEAMIQQ 62 (471)
Q Consensus 48 ~k~SrKIL~~Ar~Qq 62 (471)
..++-||.+.+|..-
T Consensus 1388 ~sT~~r~yEIGR~r~ 1402 (1516)
T KOG1832|consen 1388 FSTSARMYEIGRRRP 1402 (1516)
T ss_pred hhhhhhhhhhcccCC
Confidence 455778888888766
No 27
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=26.35 E-value=4.5e+02 Score=23.12 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=64.8
Q ss_pred ccCCchHHHHHHHHHHhhccCc-HHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHhhCCC
Q 012070 321 MEYCGTTSYFIKLLLEKKYGLP-YRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKH 399 (471)
Q Consensus 321 m~ysg~~SiFirvLLdKKYaLP-yrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H 399 (471)
|.||-...--|+-++...=..| -.+++..-..|++-.+... -+=..-.++.--.-..|..+|+++|..+++++..-..
T Consensus 5 ma~s~~~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~~-~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~ 83 (117)
T PF08349_consen 5 MAHSQKIYRELGRLVANAGKRPLEEVFEEYEELLMEALSKPP-TRGSHINVLQHIFGYFKKKLSSEEKQHFLDLIEDYRE 83 (117)
T ss_pred eeCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 3444444555566666655555 2334444444444433221 1334556666667778899999999999999987777
Q ss_pred CCCChhhHHHHHhhhhccCcch
Q 012070 400 KLVRLSFLMPIIVSLLFVGSSD 421 (471)
Q Consensus 400 ~~ItpEIrREL~~s~~~~~~~~ 421 (471)
-.|+-.....++.+++..-..+
T Consensus 84 g~i~l~~~l~~L~~~~~ry~~~ 105 (117)
T PF08349_consen 84 GKIPLSVPLTLLKHLARRYPDE 105 (117)
T ss_pred CCccHHHHHHHHHHHHHHCCCH
Confidence 7888888888888877665544
No 28
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=25.61 E-value=38 Score=30.37 Aligned_cols=10 Identities=10% Similarity=0.208 Sum_probs=4.5
Q ss_pred CCChHHHHHH
Q 012070 165 KLDESFINLY 174 (471)
Q Consensus 165 ~l~pkVvevY 174 (471)
.|+.+|.-+|
T Consensus 64 ~id~~v~shi 73 (101)
T PF09026_consen 64 PIDDKVQSHI 73 (101)
T ss_dssp ---HHHHHHH
T ss_pred chhHhhhhhh
Confidence 3666666665
No 29
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=24.78 E-value=3.2e+02 Score=27.64 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHH-HhhhhcC
Q 012070 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQ-RYKNELQ 383 (471)
Q Consensus 305 SIPvlHsaaAL~kl~em~ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQ-rYk~dlt 383 (471)
++|.-.-...|.+++.-..+..+.-|+++|++++- ...+..++.+|....++.+..-+ +. .-...||
T Consensus 145 ~i~~e~K~~ll~~l~~~~~~~~~~nfl~~lv~~~R---~~~l~~i~~~f~~l~~~~~~~~~---------a~VtSA~pLs 212 (271)
T PRK13430 145 AAPAEAKRELLARLLYGKVTPVTERLAEQAVGRPR---GRSIEEGLDELSNLAAARRGRSV---------ATVTTAVPLS 212 (271)
T ss_pred CCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHHHHHcCeeE---------EEEEecCCCC
Confidence 34444444444455443344556679999999854 24566677777766554221000 00 0123699
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 012070 384 KEDKDDLRILLKKQKHKLV 402 (471)
Q Consensus 384 ~eqkeaLl~Ll~~~~H~~I 402 (471)
++|++.|.+.+.+..+..|
T Consensus 213 ~~q~~~L~~~L~k~~g~~V 231 (271)
T PRK13430 213 DEQKQRLAAALSRIYGRPV 231 (271)
T ss_pred HHHHHHHHHHHHHHHCCce
Confidence 9999999999987755433
No 30
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=24.20 E-value=7.4e+02 Score=29.21 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=51.3
Q ss_pred ccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHhhccCC---ChHHHHHHHHHhhhHHHHHhhhhhcCCchHH
Q 012070 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNL---NAKKAERFYKLVLLPRIRDDIRKNKKLHFAL 261 (471)
Q Consensus 185 rSGKLPKaFKiiP~L~nWEeiL~lT~Pe~WSp~A~y~aTriF~Snl---~~~~aqrFy~~VLLPrvRedI~e~KKLn~HL 261 (471)
....||-.|.+=-+.....++|.=. +..=-+-.+..+-+.+..+| |-..-++||. |||.+|-.-..+....++-+
T Consensus 414 ~~~elPftf~~P~s~eel~~lL~~~-~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~-vLlq~i~~la~~~~~~~~~~ 491 (840)
T PF04147_consen 414 AKSELPFTFPCPSSHEELLELLDGY-SPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFG-VLLQHILYLASQDSPPPFEV 491 (840)
T ss_pred cccCCCceecCCCCHHHHHHHHhcC-CHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHH-HHHHHHHHHhcccCCcCHHH
Confidence 4567888887444454555555421 22223334444455555665 4455667775 68899888666665778877
Q ss_pred HHHHHHhhcC
Q 012070 262 YQALKKSLYK 271 (471)
Q Consensus 262 Y~ALkKAlyK 271 (471)
.+.|.+-||.
T Consensus 492 ld~L~~~L~~ 501 (840)
T PF04147_consen 492 LDSLIPHLYD 501 (840)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 31
>KOG1617 consensus CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase [Lipid transport and metabolism]
Probab=24.14 E-value=69 Score=32.63 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCc
Q 012070 173 LYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWT 215 (471)
Q Consensus 173 vY~~vG~~Ls~YrSGKLPKaFKiiP~L~nWEeiL~lT~Pe~WS 215 (471)
|-=-.|-+--||++||+|+++.+ .+.-|....++| |..||
T Consensus 163 V~Lv~~~~y~ry~~l~~p~~~a~--~f~~~~~~~~l~-~~~~S 202 (243)
T KOG1617|consen 163 VLLVAGAFYLRYQNLKLPYTLAV--FFNPWKAATQLT-PLLAS 202 (243)
T ss_pred HHHHHHHHHHHHhcCCCchhHHH--hcchhhhhhhcc-chhhh
Confidence 33444666789999999999999 899999999855 66666
No 32
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair]
Probab=24.09 E-value=88 Score=31.90 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccccCCCchHHHH-HhhcCCCCCchhHHHHhHHhh-----------ccCCChHHHHH
Q 012070 170 FINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQV-LYLTEPEKWTPNAMFQATRIF-----------SSNLNAKKAER 237 (471)
Q Consensus 170 VvevY~~vG~~Ls~YrSGKLPKaFKiiP~L~nWEei-L~lT~Pe~WSp~A~y~aTriF-----------~Snl~~~~aqr 237 (471)
.++|-+..-.+|+.|++. ||- =+++ +.+|+|. +|..|+|+|.|+. +|++++.+.++
T Consensus 105 c~evi~~a~~vl~syk~~-lpa----------T~~~~~D~SrP~-ft~aA~~~ack~lKlKVdK~kli~~sg~~~s~F~~ 172 (262)
T KOG4557|consen 105 CVEVIKSAQNVLSSYKER-LPA----------TRRANADFSRPV-FTAAAFYLACKKLKLKVDKLKLIEVSGTSESEFSC 172 (262)
T ss_pred HHHHHHHHHHHHHHHHhc-Cch----------hhhcCCcccchH-HHHHHHHHHHHHHHHhhhHhhcccccCCCHHHHHH
Confidence 467888999999999986 332 2332 5678886 9999999999865 57777766554
No 33
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.19 E-value=53 Score=39.18 Aligned_cols=11 Identities=9% Similarity=-0.006 Sum_probs=4.2
Q ss_pred CChHHHHHHHH
Q 012070 166 LDESFINLYKG 176 (471)
Q Consensus 166 l~pkVvevY~~ 176 (471)
|+|.=.+...+
T Consensus 986 L~~~q~~~lq~ 996 (1010)
T KOG1991|consen 986 LTPEQQDSLQT 996 (1010)
T ss_pred CCHHHHHHHHH
Confidence 44433333333
No 34
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=22.64 E-value=2.6e+02 Score=27.94 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=42.7
Q ss_pred hhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCch-HHHHHHHHHHhhccCcHHHHHHHHHH
Q 012070 274 AFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGT-TSYFIKLLLEKKYGLPYRVVDAIVAH 352 (471)
Q Consensus 274 AFfKGIL~PLc~sg~CTlrEA~IigSVL~K~SIPvlHsaaAL~kl~em~ysg~-~SiFirvLLdKKYaLPyrvIDalV~h 352 (471)
..+.+++.|-..+.+...|+..+-. .+|..|.+..+... -.+|++.+-.--..+...++.+++|.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~c--------------LGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dl 91 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKC--------------LGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDL 91 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH--------------HHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678889999999888888877632 12222222222222 23455555222556666677788887
Q ss_pred HHhhhc
Q 012070 353 FMRFLE 358 (471)
Q Consensus 353 FlrF~~ 358 (471)
.+-|.-
T Consensus 92 l~~~g~ 97 (298)
T PF12719_consen 92 LLTHGI 97 (298)
T ss_pred HHHcCc
Confidence 777753
No 35
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.94 E-value=1.8e+02 Score=26.50 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHh-hhcc--CCCcchHHHHHHHHH--HHHhhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhc
Q 012070 342 PYRVVDAIVAHFMR-FLED--TRVMPVIWHQSLLAF--VQRYKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLF 416 (471)
Q Consensus 342 PyrvIDalV~hFlr-F~~~--~~~LPVlWHQsLL~F--vQrYk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~ 416 (471)
|..+-+..|.+... |-.. ...|+.+=.+|+-.| ..+||||. +.+++.-.-- . ..
T Consensus 21 PL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~------RyLkiWi~ya--------------~-~~ 79 (125)
T smart00777 21 PLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDP------RYLKIWLKYA--------------D-NC 79 (125)
T ss_pred ChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCH------HHHHHHHHHH--------------H-hc
Confidence 66666666666653 3322 345777777788776 57888885 3333322110 0 11
Q ss_pred cCcchhhHHHHHhhhhhHHHHHHHH
Q 012070 417 VGSSDLHKYLFQQNMISMHSLLTCR 441 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (471)
....++.+||+.+++|.+|+++-..
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~ 104 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEE 104 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHH
Confidence 3345679999999999999998754
Done!