Query 012070
Match_columns 471
No_of_seqs 139 out of 225
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 21:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ilr_A Protein FACE, fanconi a 98.5 4.7E-06 1.6E-10 81.8 18.6 182 212-397 62-247 (264)
2 2ilr_A Protein FACE, fanconi a 28.2 4.3E+02 0.015 25.9 11.1 129 289-431 47-186 (264)
3 1abv_A Delta subunit of the F1 26.0 1.3E+02 0.0044 25.0 5.9 87 299-397 45-131 (134)
4 2iu1_A EIF5, eukaryotic transl 25.7 19 0.00064 33.9 0.7 15 45-59 131-145 (208)
5 1wh5_A ZF-HD homeobox family p 24.9 50 0.0017 26.1 3.0 51 377-429 19-71 (80)
6 3k2a_A Homeobox protein MEIS2; 23.0 98 0.0034 23.5 4.3 36 381-416 4-40 (67)
7 1jgg_A Segmentation protein EV 21.1 79 0.0027 23.1 3.3 42 377-420 3-44 (60)
8 2zc2_A DNAD-like replication p 20.4 1.8E+02 0.0061 22.3 5.4 44 370-416 5-49 (78)
9 2dk8_A DNA-directed RNA polyme 18.0 65 0.0022 26.4 2.4 49 368-424 16-64 (81)
10 4gco_A Protein STI-1; structur 17.4 2.4E+02 0.0081 22.3 5.6 67 166-243 8-74 (126)
No 1
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=98.53 E-value=4.7e-06 Score=81.81 Aligned_cols=182 Identities=12% Similarity=0.166 Sum_probs=153.8
Q ss_pred CCCchhHHHHhHHhhcc---CCChHHHHHHHHHhhhHHHHHhhhhhcCCchHHHHHHHHhhcC-chhhhhhhhcccccCC
Q 012070 212 EKWTPNAMFQATRIFSS---NLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSG 287 (471)
Q Consensus 212 e~WSp~A~y~aTriF~S---nl~~~~aqrFy~~VLLPrvRedI~e~KKLn~HLY~ALkKAlyK-P~AFfKGIL~PLc~sg 287 (471)
++-|..++++....+.+ -++=..|.-|....+||++++- +..=.-+|..|+.--.-| |.||..|+++||...+
T Consensus 62 ~~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L---~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~ 138 (264)
T 2ilr_A 62 PQLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSL---TSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAP 138 (264)
T ss_dssp GGCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC---SSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHST
T ss_pred ccCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc---cCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence 36788899998886666 4567889999999999999987 677788888888766544 9999999999999877
Q ss_pred CcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHH
Q 012070 288 TCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIW 367 (471)
Q Consensus 288 ~CTlrEA~IigSVL~K~SIPvlHsaaAL~kl~em~ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlW 367 (471)
.-..-.+-+|..+|.--++++.|.+..+-.+-+.+|+-.+...+..++++|-.|.-..++.+|..+..-...-.. -..+
T Consensus 139 ~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk-SlkF 217 (264)
T 2ilr_A 139 GTGPAQTELLCCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATT-SMAY 217 (264)
T ss_dssp TCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CC-SHHH
T ss_pred CCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhc-ccHH
Confidence 667788889999998678999999999999999999999999999999999999999999999988754432221 4679
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHhhC
Q 012070 368 HQSLLAFVQRYKNELQKEDKDDLRILLKKQ 397 (471)
Q Consensus 368 HQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~ 397 (471)
-+-+|+|+..|...+++.|+..|...+...
T Consensus 218 akLll~~itky~~~i~~~~~~~L~~~l~~n 247 (264)
T 2ilr_A 218 AKLMLTVMTKYQANITETQRLGLAMALEPN 247 (264)
T ss_dssp HHHHHHHHHHTGGGCCHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhHHhcCHHHHHHHHHHHHhh
Confidence 999999999999999999999898887643
No 2
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=28.17 E-value=4.3e+02 Score=25.85 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=77.4
Q ss_pred cchhHHHHHHHHHhccCCCcccHHHHHHHHhcc----cCCchHHHHHHHHHHhhccCc---HHH-HHHHHHHHHhhhccC
Q 012070 289 CNLREAVIIGSVIEKISIPMLHSSVALLKLAEM----EYCGTTSYFIKLLLEKKYGLP---YRV-VDAIVAHFMRFLEDT 360 (471)
Q Consensus 289 CTlrEA~IigSVL~K~SIPvlHsaaAL~kl~em----~ysg~~SiFirvLLdKKYaLP---yrv-IDalV~hFlrF~~~~ 360 (471)
|+.++--.+.+-+.-.+++=--.......+..+ .|+.++.++=..+|.|--+|. -|+ +++++.++-+|-..-
T Consensus 47 ~sp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L~~~ASR~L~sal~~f~k~~p~a~ 126 (264)
T 2ilr_A 47 CSPSQMDLLCAQLQLPQLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSLTSSASRLLTTALTSFAAKYTYPV 126 (264)
T ss_dssp CCHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHSHHHH
T ss_pred CCHHHHHHHHHHHhhccCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHhCcHHH
Confidence 888888888888886655533222222223333 244444444444555554442 333 677777775554321
Q ss_pred ---CCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcchhhHHHHHhhh
Q 012070 361 ---RVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSSDLHKYLFQQNM 431 (471)
Q Consensus 361 ---~~LPVlWHQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~~~~~~~~~~~~ 431 (471)
--+|++| +..+...|.+.+..+++ |..+.|+.+.-+...++..+-.+-|--+||.-+
T Consensus 127 ~~all~PLL~-----------~~~~g~~Q~eLi~rlik---~e~l~p~~~~lll~~iL~l~WtE~~~~Vlq~lL 186 (264)
T 2ilr_A 127 CSALLDPVLQ-----------APGTGPAQTELLCCLVK---MESLEPDAQVLMLGQILELPWKEETFLVLQSLL 186 (264)
T ss_dssp HHHHHHHHHH-----------STTCCHHHHHHHHHHHH---CTTSCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----------CCCCCHHHHHHHHHHHH---hccCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 1124444 35799999999999998 567778888877777776666665555555433
No 3
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=25.96 E-value=1.3e+02 Score=25.05 Aligned_cols=87 Identities=7% Similarity=0.124 Sum_probs=35.6
Q ss_pred HHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhccCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHh
Q 012070 299 SVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRY 378 (471)
Q Consensus 299 SVL~K~SIPvlHsaaAL~kl~em~ysg~~SiFirvLLdKKYaLPyrvIDalV~hFlrF~~~~~~LPVlWHQsLL~FvQrY 378 (471)
.+|. -.||.-.-...|..++.-..+..+.-||++|++++- ...+..++..|....++.+.. ..+-| ..
T Consensus 45 ~~l~-P~i~~~~K~~~l~~~~~~~~~~~~~nfl~ll~~~~R---l~~l~~I~~~f~~l~~~~~~~-------~~a~V-~S 112 (134)
T 1abv_A 45 ELLS-GALAPETLAESFIAVCGEQLDENGQNLIRVMAENGR---LNALPDVLEQFIHLRAVSEAT-------AEVDV-IS 112 (134)
T ss_dssp HHHT-CSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHC-ccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHCCe-------eEEEE-Ee
Confidence 3444 444554445666677665566677789999999884 234555666665554432100 00000 12
Q ss_pred hhhcCHHHHHHHHHHHhhC
Q 012070 379 KNELQKEDKDDLRILLKKQ 397 (471)
Q Consensus 379 k~dlt~eqkeaLl~Ll~~~ 397 (471)
...||++|++.|.+.+.+.
T Consensus 113 A~~Ls~~q~~~l~~~L~~~ 131 (134)
T 1abv_A 113 AAALSEQQLAKISAAMEKR 131 (134)
T ss_dssp -------------------
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 2368999999998887654
No 4
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=25.69 E-value=19 Score=33.93 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.5
Q ss_pred ccCchhhHHHHHHHH
Q 012070 45 MISSGISSKILKEAM 59 (471)
Q Consensus 45 ~vd~k~SrKIL~~Ar 59 (471)
|++..++++++++|.
T Consensus 131 ~~~~e~~k~v~~~~~ 145 (208)
T 2iu1_A 131 YVSKELAKEIRVKAE 145 (208)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 444455555554443
No 5
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=24.92 E-value=50 Score=26.14 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=34.4
Q ss_pred HhhhhcCHHHHHHHHHHHhhCC--CCCCChhhHHHHHhhhhccCcchhhHHHHHh
Q 012070 377 RYKNELQKEDKDDLRILLKKQK--HKLVRLSFLMPIIVSLLFVGSSDLHKYLFQQ 429 (471)
Q Consensus 377 rYk~dlt~eqkeaLl~Ll~~~~--H~~ItpEIrREL~~s~~~~~~~~~~~~~~~~ 429 (471)
|.+.-+|.+|.+.|......-+ .+-.+.+-|.+|...|--.+.- -+.-||.
T Consensus 19 R~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~--VkvWFqN 71 (80)
T 1wh5_A 19 RHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQV--LKVWLHN 71 (80)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHH--HHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCccc--ccCCccc
Confidence 3456799999999999887521 2336888999998887333322 2556664
No 6
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=22.97 E-value=98 Score=23.49 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=28.4
Q ss_pred hcCHHHHHHHHHHHhhC-CCCCCChhhHHHHHhhhhc
Q 012070 381 ELQKEDKDDLRILLKKQ-KHKLVRLSFLMPIIVSLLF 416 (471)
Q Consensus 381 dlt~eqkeaLl~Ll~~~-~H~~ItpEIrREL~~s~~~ 416 (471)
-++.+|+..|.+.+..| .||-.|++.|.+|...+--
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l 40 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGL 40 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCc
Confidence 47999999999998866 5677899999999887643
No 7
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=21.14 E-value=79 Score=23.09 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=31.0
Q ss_pred HhhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcc
Q 012070 377 RYKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSS 420 (471)
Q Consensus 377 rYk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~ 420 (471)
|.+.-+|.+|...|-......++ .+++-+.+|...+--.+..
T Consensus 3 r~Rt~ft~~Q~~~Le~~F~~~~y--p~~~~r~~La~~l~l~~~q 44 (60)
T 1jgg_A 3 RYRTAFTRDQLGRLEKEFYKENY--VSRPRRCELAAQLNLPEST 44 (60)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSC--CCHHHHHHHHHHHTSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHCcCHHH
Confidence 45567899999999999876554 4677788888877544443
No 8
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.41 E-value=1.8e+02 Score=22.30 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=35.9
Q ss_pred HHHHHHHHhhh-hcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhc
Q 012070 370 SLLAFVQRYKN-ELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLF 416 (471)
Q Consensus 370 sLL~FvQrYk~-dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~ 416 (471)
.++.|+|++.+ .+|+-+.+.|.+++... ..+||+..++++-.+.
T Consensus 5 ~l~~~~e~~~gr~ls~~e~~~i~~w~~~~---~~~~elI~~A~~~a~~ 49 (78)
T 2zc2_A 5 ALVEDFERELGRMLSPFELEDLQKTVSDD---KTDPDLVRSALREAVF 49 (78)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 56788888877 89999999999998853 4569999999877653
No 9
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=17.96 E-value=65 Score=26.44 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcchhhH
Q 012070 368 HQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSSDLHK 424 (471)
Q Consensus 368 HQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~~~~~ 424 (471)
.+.+|.|++.|-+-+|.++-..-+ +.|+++.|-+.+|.|+.-.-=++.|
T Consensus 16 e~~IL~l~~~~P~GItd~~L~~~~--------p~~~~~~r~~aIN~LL~~gkiel~K 64 (81)
T 2dk8_A 16 ENRIIELCHQFPHGITDQVIQNEM--------PHIEAQQRAVAINRLLSMGQLDLLR 64 (81)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHC--------TTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHC--------CCCCHHHHHHHHHHHHHcCCeEEEe
No 10
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=17.39 E-value=2.4e+02 Score=22.30 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHhhccCCChHHHHHHHHHhh
Q 012070 166 LDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 243 (471)
Q Consensus 166 l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~L~nWEeiL~lT~Pe~WSp~A~y~aTriF~Snl~~~~aqrFy~~VL 243 (471)
|||...+.|...|..+ |+.|+..+|++ .+++.|.+ +...+.+.+.-..++...=+...|...|+.+|
T Consensus 8 inP~~a~~~~~~G~~~--~~~g~~~~A~~------~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 8 INPELAQEEKNKGNEY--FKKGDYPTAMR------HYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp CCHHHHHHHHHHHHHH--HHTTCHHHHHH------HHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHH--HHcCCHHHHHH------HHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Done!