Query 012070
Match_columns 471
No_of_seqs 139 out of 225
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 21:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jgga_ a.4.1.1 (A:) Even-skip 54.9 4.2 0.0003 29.0 3.0 36 378-415 2-37 (57)
2 d1le8a_ a.4.1.1 (A:) Mating ty 52.8 6.7 0.00049 27.4 3.8 34 380-415 2-35 (53)
3 d1lkja_ a.39.1.5 (A:) Calmodul 48.6 38 0.0028 25.9 8.3 120 227-353 1-128 (146)
4 d1p7ia_ a.4.1.1 (A:) Engrailed 33.3 23 0.0017 24.4 4.1 34 380-415 4-37 (53)
5 d1ngka_ a.1.1.1 (A:) Protozoan 32.4 98 0.0071 23.5 8.5 34 381-414 77-114 (126)
6 d1fx0a1 a.69.1.1 (A:373-501) F 31.1 42 0.0031 27.0 6.0 84 165-269 30-122 (129)
7 d1pbya1 a.3.1.7 (A:1-85) Quino 29.1 22 0.0016 27.1 3.6 40 364-405 33-72 (85)
8 d1lfba_ a.4.1.1 (A:) Hepatocyt 26.5 29 0.0021 26.0 3.9 32 381-414 3-34 (78)
9 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 24.3 25 0.0018 26.3 3.0 51 377-430 19-72 (80)
10 d2craa1 a.4.1.1 (A:7-64) Homeo 24.1 41 0.003 23.7 4.1 46 379-428 5-50 (58)
11 d2e1oa1 a.4.1.1 (A:8-64) Homeo 23.6 42 0.003 23.4 4.0 32 381-414 6-37 (57)
12 d1fjla_ a.4.1.1 (A:) Paired pr 22.7 43 0.0031 23.9 4.1 39 380-421 7-45 (65)
13 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 20.6 55 0.004 23.7 4.3 38 379-416 5-43 (73)
No 1
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=54.94 E-value=4.2 Score=28.97 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=30.3
Q ss_pred hhhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhh
Q 012070 378 YKNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLL 415 (471)
Q Consensus 378 Yk~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~ 415 (471)
++.-+|++|.+.|.......+| .+++-|.+|...+-
T Consensus 2 ~Rt~fT~~Ql~~Le~~F~~~~y--p~~~~r~~LA~~lg 37 (57)
T d1jgga_ 2 YRTAFTRDQLGRLEKEFYKENY--VSRPRRCELAAQLN 37 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSC--CCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHhC
Confidence 4567899999999999997666 48999999998874
No 2
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.84 E-value=6.7 Score=27.42 Aligned_cols=34 Identities=3% Similarity=0.039 Sum_probs=28.5
Q ss_pred hhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhh
Q 012070 380 NELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLL 415 (471)
Q Consensus 380 ~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~ 415 (471)
.-||++|+..|-......++ .+.+-+.+|...+-
T Consensus 2 t~~s~~q~~~Le~~F~~~~~--P~~~~~~~LA~~lg 35 (53)
T d1le8a_ 2 SSISPQARAFLEQVFRRKQS--LNSKEKEEVAKKCG 35 (53)
T ss_dssp CCCCHHHHHHHHHHHHHCSC--CCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHC
Confidence 46899999999999987544 58999999998874
No 3
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.57 E-value=38 Score=25.86 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=74.5
Q ss_pred ccCCChHHHHHHHHHhhhHHHHHhhhhhcCCchH-HHHHHHHhhcCchhhh-hhhhcccc--cCCCcchhHHHHHHHHHh
Q 012070 227 SSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFA-LYQALKKSLYKPAAFN-KGILFPLC--KSGTCNLREAVIIGSVIE 302 (471)
Q Consensus 227 ~Snl~~~~aqrFy~~VLLPrvRedI~e~KKLn~H-LY~ALkKAlyKP~AFf-KGIL~PLc--~sg~CTlrEA~IigSVL~ 302 (471)
+|||++.+.+.|-...=+ =|...+.+|++. +..+|...-+.|.... ..++.-.+ ..++++..+...+-+
T Consensus 1 ~~~ls~~~i~~l~~~F~~----~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 73 (146)
T d1lkja_ 1 SSNLTEEQIAEFKEAFAL----FDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMS--- 73 (146)
T ss_dssp CCCCCHHHHHHHHHHHHH----HCCSSSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCSSSCCEEEHHHHHHHHH---
T ss_pred CCCCCHHHHHHHHHHHHH----HCCCCCCcEeHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCcccccHHHHHHHHH---
Confidence 589999999887332211 277888899987 5666777767765432 23333233 233455444443332
Q ss_pred ccCCCccc--HHHHHHHHhcccCCchHHH--HHHHHHHhhccCcHHHHHHHHHHH
Q 012070 303 KISIPMLH--SSVALLKLAEMEYCGTTSY--FIKLLLEKKYGLPYRVVDAIVAHF 353 (471)
Q Consensus 303 K~SIPvlH--saaAL~kl~em~ysg~~Si--FirvLLdKKYaLPyrvIDalV~hF 353 (471)
........ -.....+..+.+-+|.-+. |.++|-.=...+|-..++.++.+|
T Consensus 74 ~~~~~~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 128 (146)
T d1lkja_ 74 RQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 128 (146)
T ss_dssp HHTCCCCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCcccHHHHHHHHHhc
Confidence 22222221 2334466777788885444 888888889999999999988876
No 4
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=33.29 E-value=23 Score=24.42 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=28.0
Q ss_pred hhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhh
Q 012070 380 NELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLL 415 (471)
Q Consensus 380 ~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~ 415 (471)
.-+|++|.+.|-......+ -.+++-|.+|..+|=
T Consensus 4 t~ft~~Q~~~Le~~F~~~~--yp~~~~r~~LA~~lg 37 (53)
T d1p7ia_ 4 TAFSSEQLARLKREFNENR--YLTERRRQQLSSELG 37 (53)
T ss_dssp CCCCHHHHHHHHHHHHHCS--SCCHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHhC
Confidence 4589999999999998755 457899999998874
No 5
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
Probab=32.42 E-value=98 Score=23.51 Aligned_cols=34 Identities=6% Similarity=0.006 Sum_probs=23.8
Q ss_pred hcCHHHHHHHHHHH----hhCCCCCCChhhHHHHHhhh
Q 012070 381 ELQKEDKDDLRILL----KKQKHKLVRLSFLMPIIVSL 414 (471)
Q Consensus 381 dlt~eqkeaLl~Ll----~~~~H~~ItpEIrREL~~s~ 414 (471)
.|++++.++-+.++ .....+.++|+.+.++++.+
T Consensus 77 ~I~~~~fd~wl~~~~~al~~~~~~~~~~~~~~~l~~~~ 114 (126)
T d1ngka_ 77 RISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYL 114 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 58888888766554 33466778888888776554
No 6
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=31.12 E-value=42 Score=26.97 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=63.0
Q ss_pred CCChHH---HHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHhhccCCChHHHHHHHHH
Q 012070 165 KLDESF---INLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKL 241 (471)
Q Consensus 165 ~l~pkV---vevY~~vG~~Ls~YrSGKLPKaFKiiP~L~nWEeiL~lT~Pe~WSp~A~y~aTriF~Snl~~~~aqrFy~~ 241 (471)
.||+.. ++--+++-++|+.=.- ..++-+++++. +|++|+-|.-+++.....+|=+.
T Consensus 30 dlD~~t~~~l~rG~rl~ElLKQ~q~----------~Pl~v~eQv~i-----------LyA~~~G~LD~ipv~~I~~fe~~ 88 (129)
T d1fx0a1 30 DLDKATQNQLARGQRLRELLKQPQS----------APLTVEEQVMT-----------IYTGTNGYLDSLELDQVRKYLVE 88 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCCCTT----------CCCCHHHHHHH-----------HHHHHTTSSSSSCHHHHHHHHHH
T ss_pred chhHHHHHhhhHHHHHHHHHHcccc----------cCCCHHHHHHH-----------HHHHHcCccccCCHHHHHHHHHH
Confidence 477766 4445677777764332 23556777775 59999999999999999998555
Q ss_pred hh------hHHHHHhhhhhcCCchHHHHHHHHhh
Q 012070 242 VL------LPRIRDDIRKNKKLHFALYQALKKSL 269 (471)
Q Consensus 242 VL------LPrvRedI~e~KKLn~HLY~ALkKAl 269 (471)
++ .|-+.+.|.++++|+--+=..|++++
T Consensus 89 ll~~l~~~~~~il~~I~~~~~ltde~~~~L~~~i 122 (129)
T d1fx0a1 89 LRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAI 122 (129)
T ss_dssp HHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44 37889999999999988888887775
No 7
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=29.11 E-value=22 Score=27.13 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHhhCCCCCCChh
Q 012070 364 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVRLS 405 (471)
Q Consensus 364 PVlWHQsLL~FvQrYk~dlt~eqkeaLl~Ll~~~~H~~ItpE 405 (471)
+--|...+-.-++.|...|+++++..+.+-|-. |+.+.|+
T Consensus 33 ~~~W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa~--~yG~~p~ 72 (85)
T d1pbya1 33 PEGWDMTVTRMMRNHGVALEPEERAAIVRHLSD--TRGLSLA 72 (85)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHH--HSCCCSG
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HcCCCcc
Confidence 446999999999999999999999999998876 4555554
No 8
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=26.50 E-value=29 Score=26.02 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=28.5
Q ss_pred hcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhh
Q 012070 381 ELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSL 414 (471)
Q Consensus 381 dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~ 414 (471)
-+|++|...|-+......|| +.+.|.+|+..+
T Consensus 3 ~~tp~Ql~~Le~~F~~n~yP--s~~~Re~LA~~l 34 (78)
T d1lfba_ 3 KWGPASQQILFQAYERQKNP--SKEERETLVEEC 34 (78)
T ss_dssp CCCHHHHHHHHHHHTTCSSC--CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHh
Confidence 37899999999999988887 899999999887
No 9
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.27 E-value=25 Score=26.29 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=34.6
Q ss_pred HhhhhcCHHHHHHHHHHHhhC---CCCCCChhhHHHHHhhhhccCcchhhHHHHHhh
Q 012070 377 RYKNELQKEDKDDLRILLKKQ---KHKLVRLSFLMPIIVSLLFVGSSDLHKYLFQQN 430 (471)
Q Consensus 377 rYk~dlt~eqkeaLl~Ll~~~---~H~~ItpEIrREL~~s~~~~~~~~~~~~~~~~~ 430 (471)
|++.-+|.+|++.|...+... .|+. +.+.+.+|...+ -++..+ -+..||.|
T Consensus 19 R~Rt~ft~~Q~~~L~~~fe~~~~~~~~p-~~~~~~~la~~~-gl~~~~-i~vWFqN~ 72 (80)
T d1wh7a_ 19 RFRTKFTAEQKEKMLAFAERLGWRIQKH-DDVAVEQFCAET-GVRRQV-LKIWMHNN 72 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSCCCSS-TTHHHHHHHHHS-CCCHHH-HHHHHHTT
T ss_pred CccccCCHHHHHHHHHHHHHhcccccCc-CHHHHHHHHHHH-CCCHHH-eeeecccC
Confidence 567789999999998877652 3333 778888888776 344444 34456543
No 10
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.15 E-value=41 Score=23.70 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=32.7
Q ss_pred hhhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcchhhHHHHH
Q 012070 379 KNELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSSDLHKYLFQ 428 (471)
Q Consensus 379 k~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~~~~~~~~~ 428 (471)
+.-+|++|.+.|-......+ -.+++-|.+|...+--.+..+ +.-||
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~--yp~~~~r~~LA~~l~l~~~qV--~vWFq 50 (58)
T d2craa1 5 RIPYSKGQLRELEREYAANK--FITKDKRRKISAATSLSERQI--TIWFQ 50 (58)
T ss_dssp CCCSCHHHHHHHHHHHHHCS--SCCHHHHHHHHHHTCCCHHHH--HHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHcCCCHHHe--eeccc
Confidence 34689999999999998754 457899999988875333333 33454
No 11
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.59 E-value=42 Score=23.39 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=27.0
Q ss_pred hcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhh
Q 012070 381 ELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSL 414 (471)
Q Consensus 381 dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~ 414 (471)
-+|++|.+.|-......+| .+++-+.+|.+.|
T Consensus 6 ~ft~~Q~~~Le~~F~~n~y--p~~~~r~~LA~~l 37 (57)
T d2e1oa1 6 RFSNDQTIELEKKFETQKY--LSPPERKRLAKML 37 (57)
T ss_dssp CCCHHHHHHHHHHHHHCSS--CCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHh
Confidence 4799999999999987666 4689999998776
No 12
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.72 E-value=43 Score=23.89 Aligned_cols=39 Identities=5% Similarity=0.048 Sum_probs=29.1
Q ss_pred hhcCHHHHHHHHHHHhhCCCCCCChhhHHHHHhhhhccCcch
Q 012070 380 NELQKEDKDDLRILLKKQKHKLVRLSFLMPIIVSLLFVGSSD 421 (471)
Q Consensus 380 ~dlt~eqkeaLl~Ll~~~~H~~ItpEIrREL~~s~~~~~~~~ 421 (471)
.-+|++|.+.|.......+|| +++-+.+|...+- ++...
T Consensus 7 t~ft~~Q~~~Le~~F~~n~yP--s~~~r~~LA~~lg-l~~~~ 45 (65)
T d1fjla_ 7 TTFSASQLDELERAFERTQYP--DIYTREELAQRTN-LTEAR 45 (65)
T ss_dssp CCCCHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHT-CCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHhC-CCHHH
Confidence 358999999999999976655 7888888876653 33333
No 13
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.56 E-value=55 Score=23.67 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=30.2
Q ss_pred hhhcCHHHHHHHHHHHhhCC-CCCCChhhHHHHHhhhhc
Q 012070 379 KNELQKEDKDDLRILLKKQK-HKLVRLSFLMPIIVSLLF 416 (471)
Q Consensus 379 k~dlt~eqkeaLl~Ll~~~~-H~~ItpEIrREL~~s~~~ 416 (471)
+.-+|++|++.|...+..+. ||--|.+-+.+|+..+--
T Consensus 5 R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl 43 (73)
T d1pufb_ 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGI 43 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCc
Confidence 34689999999999998764 777888888888876543
Done!