BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012071
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 412 QRG-LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
+RG LP+ + +++R+WLF+H HPYP + EK +A QT L+ QV
Sbjct: 10 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQV 54
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 415 LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
LP+ SV ILR WL+EH + YP++ EK +L++QT LS QV
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQV 52
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 415 LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
P+ + +I RAWLF+H HPYP++ +K LA+ TGL+ QV
Sbjct: 5 FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQV 45
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 415 LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
LP SV ILR W+++H YP++ EK ML+++T LS Q+
Sbjct: 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQI 54
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
A R +R + + IL + + H +PYP++ K LAK++G++ +QV
Sbjct: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQV 49
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
A R +R + + IL + + H +PYP++ K LAK+ G++ +QV
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 48
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
A R +R + + IL + + H +PYP++ K LAK+ G++ +QV
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 48
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
A R +R + + IL + + H +PYP++ K LA++ G++ +QV
Sbjct: 1 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQV 48
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 426 WLFEH--FLHPYPNDSEKIMLAKQTGLSKN 453
WLF+ FL P NDS KI++AK TG +KN
Sbjct: 71 WLFKEGSFLEPSKNDSGKIVVAKITGPAKN 100
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 426 WLFEH--FLHPYPNDSEKIMLAKQTGLSKN 453
WLF+ FL P NDS KI++AK TG +KN
Sbjct: 72 WLFKEGSFLEPSKNDSGKIVVAKITGPAKN 101
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
R + + + IL + + H +PYP++ K LAK+ G++ +QV
Sbjct: 8 RHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 50
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 417 ESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQV 455
E S +LR W + H +PYP+ EK LA+ TGL+ QV
Sbjct: 503 EKSRGVLREW-YAH--NPYPSPREKRELAEATGLTTTQV 538
>pdb|2I76|A Chain A, Crystal Structure Of Protein Tm1727 From Thermotoga
Maritima
pdb|2I76|B Chain B, Crystal Structure Of Protein Tm1727 From Thermotoga
Maritima
Length = 276
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 315 KQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQ 364
K+ YH ++AS+F + + + + YT+L L +L ++D I+
Sbjct: 157 KKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLXKGVADNIK 206
>pdb|2LY9|A Chain A, Solution Nmr Structure Of Homeobox 2 Domain From Human
Zhx1 Repressor, Northeast Structural Genomics Consortium
(Nesg) Target Hr7907f
Length = 74
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRK 457
A + + L E VS L+ + +P+DSE I L K TGL+K +++K
Sbjct: 11 AKKTKEQLAELKVSYLK--------NQFPHDSEIIRLMKITGLTKGEIKK 52
>pdb|4B4T|Q Chain Q, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 337 AKSYTVLALQTISRHFRSLRDAISDQIQVTGRSL 370
AKS TV L+T+ F + D++ DQI V +S+
Sbjct: 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSI 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,446,886
Number of Sequences: 62578
Number of extensions: 525598
Number of successful extensions: 1021
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 17
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)