Query 012071
Match_columns 471
No_of_seqs 237 out of 758
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 21:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 7.5E-18 2.6E-22 138.2 5.4 63 409-471 8-71 (83)
2 2lk2_A Homeobox protein TGIF1; 99.7 3.1E-18 1.1E-22 144.0 1.8 57 414-470 11-68 (89)
3 3k2a_A Homeobox protein MEIS2; 99.7 3.2E-17 1.1E-21 129.7 4.6 58 414-471 4-62 (67)
4 1x2n_A Homeobox protein pknox1 99.7 5.7E-17 2E-21 129.0 5.9 63 409-471 8-71 (73)
5 1du6_A PBX1, homeobox protein 99.6 4.2E-16 1.4E-20 120.9 5.3 60 409-468 4-64 (64)
6 1k61_A Mating-type protein alp 99.6 6.1E-16 2.1E-20 118.6 5.5 58 412-469 2-59 (60)
7 1puf_B PRE-B-cell leukemia tra 99.6 1.3E-15 4.3E-20 121.3 5.7 61 409-469 2-63 (73)
8 1b72_B Protein (PBX1); homeodo 99.6 1.2E-15 4.2E-20 124.8 4.8 61 409-469 2-63 (87)
9 1le8_B Mating-type protein alp 99.6 2.5E-15 8.7E-20 122.8 5.8 58 414-471 8-66 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 2.6E-15 8.8E-20 123.5 5.6 58 410-467 29-86 (87)
11 2ecc_A Homeobox and leucine zi 99.4 5.7E-13 1.9E-17 109.0 5.4 58 410-470 5-63 (76)
12 1akh_A Protein (mating-type pr 99.3 3.8E-13 1.3E-17 103.1 4.0 55 409-466 6-60 (61)
13 2da4_A Hypothetical protein DK 99.3 9.5E-13 3.3E-17 106.4 2.8 60 409-468 9-70 (80)
14 1bw5_A ISL-1HD, insulin gene e 99.3 3E-12 1E-16 99.9 5.2 59 409-470 4-63 (66)
15 1ig7_A Homeotic protein MSX-1; 99.3 2.6E-12 9E-17 97.5 4.5 55 410-467 2-56 (58)
16 2dmu_A Homeobox protein goosec 99.2 9.6E-12 3.3E-16 98.0 5.5 57 409-468 8-65 (70)
17 2l7z_A Homeobox protein HOX-A1 99.2 1.2E-11 4.1E-16 98.7 5.9 58 408-468 7-64 (73)
18 2cra_A Homeobox protein HOX-B1 99.2 9.1E-12 3.1E-16 98.3 5.0 57 409-468 8-65 (70)
19 3rkq_A Homeobox protein NKX-2. 99.2 9E-12 3.1E-16 93.9 4.7 54 410-466 4-57 (58)
20 2k40_A Homeobox expressed in E 99.2 1.1E-11 3.7E-16 97.0 5.1 57 409-468 2-59 (67)
21 2e1o_A Homeobox protein PRH; D 99.2 9.3E-12 3.2E-16 98.3 4.6 56 409-467 8-64 (70)
22 2djn_A Homeobox protein DLX-5; 99.2 9.8E-12 3.4E-16 98.1 4.6 57 409-468 8-65 (70)
23 1jgg_A Segmentation protein EV 99.2 1.2E-11 4.2E-16 94.7 4.9 56 409-467 2-58 (60)
24 2hdd_A Protein (engrailed home 99.2 9.6E-12 3.3E-16 95.6 4.2 56 409-467 4-60 (61)
25 2da2_A Alpha-fetoprotein enhan 99.2 1.1E-11 3.9E-16 97.5 4.6 57 409-468 8-65 (70)
26 2da1_A Alpha-fetoprotein enhan 99.2 1E-11 3.5E-16 97.7 4.0 58 408-468 7-65 (70)
27 2h1k_A IPF-1, pancreatic and d 99.2 1.5E-11 5.2E-16 95.2 4.5 56 409-467 4-60 (63)
28 2dmq_A LIM/homeobox protein LH 99.2 1.6E-11 5.4E-16 99.0 4.7 56 409-467 8-64 (80)
29 2da3_A Alpha-fetoprotein enhan 99.2 1.6E-11 5.4E-16 98.7 4.4 57 409-468 18-75 (80)
30 1fjl_A Paired protein; DNA-bin 99.2 1.9E-11 6.4E-16 99.0 4.7 57 408-467 18-75 (81)
31 2dmt_A Homeobox protein BARH-l 99.2 2.4E-11 8.2E-16 98.4 5.0 57 409-468 18-75 (80)
32 2ecb_A Zinc fingers and homeob 99.1 2.6E-11 9E-16 101.6 5.2 55 410-467 13-67 (89)
33 1nk2_P Homeobox protein VND; h 99.1 2.9E-11 9.9E-16 97.2 5.1 57 408-467 9-66 (77)
34 2vi6_A Homeobox protein nanog; 99.1 2.4E-11 8.3E-16 93.6 4.3 55 410-467 5-60 (62)
35 3a02_A Homeobox protein arista 99.1 2.3E-11 7.9E-16 93.2 3.7 53 412-467 3-56 (60)
36 1zq3_P PRD-4, homeotic bicoid 99.1 3.5E-11 1.2E-15 94.6 4.7 56 409-467 3-59 (68)
37 1wh5_A ZF-HD homeobox family p 99.1 5E-11 1.7E-15 97.3 5.6 58 409-466 18-77 (80)
38 2dms_A Homeobox protein OTX2; 99.1 3.5E-11 1.2E-15 97.2 4.6 56 409-467 8-64 (80)
39 2cue_A Paired box protein PAX6 99.1 3.7E-11 1.3E-15 97.3 4.7 56 409-467 8-64 (80)
40 1uhs_A HOP, homeodomain only p 99.1 6.2E-11 2.1E-15 94.0 5.3 56 410-467 3-59 (72)
41 2dn0_A Zinc fingers and homeob 99.1 4.7E-11 1.6E-15 95.8 4.6 55 410-467 10-65 (76)
42 1yz8_P Pituitary homeobox 2; D 99.1 2E-11 7E-16 95.8 2.0 56 409-467 4-60 (68)
43 1ahd_P Antennapedia protein mu 99.1 4.1E-11 1.4E-15 94.3 3.6 55 410-467 4-59 (68)
44 3nau_A Zinc fingers and homeob 99.1 3.7E-11 1.3E-15 96.1 3.4 52 413-467 9-60 (66)
45 1ftt_A TTF-1 HD, thyroid trans 99.1 7.4E-11 2.5E-15 92.8 4.8 55 410-467 4-59 (68)
46 2dmp_A Zinc fingers and homeob 99.1 9.2E-11 3.1E-15 97.3 5.2 55 410-467 15-69 (89)
47 1puf_A HOX-1.7, homeobox prote 99.1 8.6E-11 2.9E-15 94.4 4.7 57 408-467 13-70 (77)
48 2da5_A Zinc fingers and homeob 99.1 1.1E-10 3.9E-15 93.6 5.4 55 410-467 9-64 (75)
49 2kt0_A Nanog, homeobox protein 99.1 9.8E-11 3.4E-15 95.1 5.0 57 408-467 22-79 (84)
50 2hi3_A Homeodomain-only protei 99.1 8.4E-11 2.9E-15 93.6 4.5 56 410-467 4-60 (73)
51 1b8i_A Ultrabithorax, protein 99.1 8.7E-11 3E-15 95.5 4.4 56 409-467 21-77 (81)
52 2d5v_A Hepatocyte nuclear fact 99.1 8E-11 2.7E-15 106.7 4.6 57 408-467 97-154 (164)
53 3a03_A T-cell leukemia homeobo 99.1 8.3E-11 2.8E-15 89.2 3.7 51 414-467 3-54 (56)
54 2m0c_A Homeobox protein arista 99.0 1.2E-10 4E-15 92.3 4.5 55 410-467 11-66 (75)
55 2ly9_A Zinc fingers and homeob 99.0 1.5E-10 5.2E-15 91.9 5.0 57 408-467 6-63 (74)
56 3a01_A Homeodomain-containing 99.0 1.5E-10 5.1E-15 96.6 4.6 56 409-467 18-74 (93)
57 3d1n_I POU domain, class 6, tr 99.0 1.9E-10 6.5E-15 103.3 5.4 56 409-467 94-149 (151)
58 2r5y_A Homeotic protein sex co 99.0 1.7E-10 5.9E-15 94.8 4.4 57 408-467 28-84 (88)
59 2cuf_A FLJ21616 protein; homeo 99.0 1.9E-10 6.4E-15 96.0 4.5 56 409-467 8-79 (95)
60 3nar_A ZHX1, zinc fingers and 99.0 2E-10 6.9E-15 96.1 4.7 57 409-468 26-83 (96)
61 2cqx_A LAG1 longevity assuranc 99.0 1.3E-10 4.4E-15 93.1 2.9 58 409-469 9-67 (72)
62 1b72_A Protein (homeobox prote 99.0 2.5E-10 8.6E-15 95.6 4.4 57 408-467 34-91 (97)
63 1au7_A Protein PIT-1, GHF-1; c 99.0 3E-10 1E-14 102.0 4.7 57 409-468 88-144 (146)
64 1wh7_A ZF-HD homeobox family p 99.0 5.1E-10 1.7E-14 91.7 5.0 57 409-466 18-77 (80)
65 1e3o_C Octamer-binding transcr 98.9 5.3E-10 1.8E-14 101.5 4.9 57 409-468 102-158 (160)
66 2xsd_C POU domain, class 3, tr 98.9 4E-10 1.4E-14 103.2 4.0 57 409-468 100-156 (164)
67 2e19_A Transcription factor 8; 98.9 7.5E-10 2.6E-14 86.9 4.6 51 413-466 8-59 (64)
68 3l1p_A POU domain, class 5, tr 98.9 5.7E-10 2E-14 101.0 3.3 58 409-469 97-154 (155)
69 1wi3_A DNA-binding protein SAT 98.9 1.6E-09 5.3E-14 87.7 4.5 55 408-464 7-61 (71)
70 2l9r_A Homeobox protein NKX-3. 98.8 1.9E-09 6.5E-14 86.2 3.9 51 415-468 11-62 (69)
71 1x2m_A LAG1 longevity assuranc 98.8 2E-09 7E-14 85.3 3.1 50 418-469 10-59 (64)
72 2da6_A Hepatocyte nuclear fact 98.8 4.5E-09 1.5E-13 90.4 5.2 55 409-466 7-83 (102)
73 1mh3_A Maltose binding-A1 home 98.8 2.4E-09 8.2E-14 105.6 3.5 53 412-467 369-421 (421)
74 1lfb_A Liver transcription fac 98.7 7.9E-09 2.7E-13 87.9 3.9 55 409-466 10-86 (99)
75 2h8r_A Hepatocyte nuclear fact 98.5 4E-08 1.4E-12 94.5 4.5 52 410-464 144-217 (221)
76 1ic8_A Hepatocyte nuclear fact 98.5 2.1E-08 7.3E-13 94.5 2.2 55 409-466 116-191 (194)
77 2da7_A Zinc finger homeobox pr 98.4 9.6E-08 3.3E-12 77.4 3.1 45 417-464 14-59 (71)
78 2nzz_A Penetratin conjugated G 93.5 0.017 5.9E-07 41.3 0.6 16 453-468 1-16 (37)
79 2ys9_A Homeobox and leucine zi 90.3 0.081 2.8E-06 42.8 1.1 44 415-461 13-56 (70)
80 1we3_A CPN60(groel); chaperoni 72.4 14 0.00047 39.4 9.6 82 289-371 356-458 (543)
81 1kp8_A Groel protein; chaperon 65.1 10 0.00034 40.5 6.8 82 289-371 357-458 (547)
82 1wlx_A Alpha-actinin 4; three- 50.4 80 0.0027 27.9 8.9 78 290-369 44-124 (129)
83 3rtk_A 60 kDa chaperonin 2; he 45.3 26 0.00088 37.5 5.8 57 289-346 356-425 (546)
84 1iok_A Chaperonin 60; chaperon 43.1 14 0.00049 39.3 3.5 82 289-371 358-459 (545)
85 3h8k_B Autocrine motility fact 42.7 32 0.0011 23.2 3.9 24 289-315 2-26 (28)
86 4afl_A P29ING4, inhibitor of g 38.7 50 0.0017 27.2 5.5 70 298-368 18-87 (104)
87 3iyg_H T-complex protein 1 sub 37.2 75 0.0026 33.4 7.8 64 305-371 371-445 (515)
88 2glo_A Brinker CG9653-PA; prot 36.8 35 0.0012 24.9 3.8 46 412-461 3-48 (59)
89 1hlv_A CENP-B, major centromer 36.2 44 0.0015 27.5 4.8 46 410-461 3-48 (131)
90 1gs9_A Apolipoprotein E, APOE4 35.5 1.1E+02 0.0039 27.6 7.7 67 292-370 93-159 (165)
91 3ko1_A Chaperonin; 9-fold symm 35.1 92 0.0031 33.1 8.1 64 305-371 389-463 (553)
92 3iyg_B T-complex protein 1 sub 35.0 87 0.003 32.8 7.8 64 305-371 368-442 (513)
93 3iyg_Q T-complex protein 1 sub 34.3 90 0.0031 32.7 7.8 64 305-371 367-441 (512)
94 3p9d_C T-complex protein 1 sub 33.7 69 0.0024 34.5 6.9 64 305-371 443-517 (590)
95 3iyg_D T-complex protein 1 sub 33.1 96 0.0033 32.5 7.8 64 305-371 375-449 (518)
96 1tc3_C Protein (TC3 transposas 33.1 45 0.0016 21.8 3.6 40 414-461 5-44 (51)
97 1a6d_B Thermosome (beta subuni 32.8 96 0.0033 32.8 7.7 67 305-371 380-454 (543)
98 3lsg_A Two-component response 32.7 43 0.0015 26.5 4.0 39 419-460 3-41 (103)
99 3ruv_A Chaperonin, CPN; double 32.5 98 0.0034 32.7 7.8 64 305-371 375-449 (543)
100 3aq1_B Thermosome subunit; gro 32.2 92 0.0032 32.5 7.4 67 305-371 333-407 (500)
101 3iyg_G T-complex protein 1 sub 31.7 1E+02 0.0035 32.3 7.7 64 305-371 370-444 (515)
102 3iyg_E T-complex protein 1 sub 31.3 1.1E+02 0.0038 32.0 7.9 64 305-371 371-445 (515)
103 3p9d_B T-complex protein 1 sub 31.0 1.1E+02 0.0037 32.2 7.8 64 305-371 375-449 (527)
104 2elh_A CG11849-PA, LD40883P; s 30.3 42 0.0014 26.4 3.5 44 410-461 18-61 (87)
105 3p9d_G T-complex protein 1 sub 29.9 1.1E+02 0.0039 32.3 7.7 64 305-371 384-458 (550)
106 3iyg_A T-complex protein 1 sub 28.7 1.3E+02 0.0046 31.5 8.0 64 305-371 377-451 (529)
107 1q3q_A Thermosome alpha subuni 27.7 1.2E+02 0.004 32.2 7.3 67 305-371 382-456 (548)
108 1a6d_A Thermosome (alpha subun 26.3 1.2E+02 0.004 32.1 7.1 67 305-371 379-453 (545)
109 3hug_A RNA polymerase sigma fa 25.3 21 0.00073 28.1 0.9 46 414-467 37-83 (92)
110 4afl_A P29ING4, inhibitor of g 25.2 2.8E+02 0.0095 22.6 10.0 61 295-357 26-101 (104)
111 1ez3_A Syntaxin-1A; three heli 25.0 2.5E+02 0.0086 23.1 7.6 37 299-335 48-84 (127)
112 3p9d_E T-complex protein 1 sub 24.9 1.1E+02 0.0037 32.5 6.5 64 305-371 414-488 (562)
113 3p9d_A T-complex protein 1 sub 24.8 1.7E+02 0.0057 31.1 7.9 64 305-371 393-467 (559)
114 3iyg_Z T-complex protein 1 sub 23.9 1.6E+02 0.0056 30.8 7.6 64 305-371 374-448 (517)
115 2o8x_A Probable RNA polymerase 23.3 24 0.00084 25.6 0.9 47 413-467 14-61 (70)
116 1gk4_A Vimentin; intermediate 22.7 1.3E+02 0.0044 24.2 5.1 70 292-370 2-77 (84)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-18 Score=138.21 Aligned_cols=63 Identities=32% Similarity=0.493 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCCC
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKFT 471 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i~ 471 (471)
+|+++.|+++++.+|+.||.+|..||||+.++|+.||.+|||++.||++||+| |+|.++++++
T Consensus 8 rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 8 KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 34444599999999999999999999999999999999999999999999999 9999998874
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-18 Score=144.03 Aligned_cols=57 Identities=42% Similarity=0.556 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCC
Q 012071 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKF 470 (471)
Q Consensus 414 glpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i 470 (471)
-||++++.+|++||.+|..||||+.++|+.||++|||++.||+|||+| |+|.|++++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 499999999999999999999999999999999999999999999999 999998875
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=3.2e-17 Score=129.68 Aligned_cols=58 Identities=36% Similarity=0.585 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCCC
Q 012071 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKFT 471 (471)
Q Consensus 414 glpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i~ 471 (471)
.||++++.+|+.||.+|..||||+..+|+.||.+|||+..||++||+| |+|.+|++++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 599999999999999999999999999999999999999999999999 9999999874
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=5.7e-17 Score=129.02 Aligned_cols=63 Identities=32% Similarity=0.479 Sum_probs=58.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCCC
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKFT 471 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i~ 471 (471)
+|++..|+++++.+|+.||.+|..+|||+.++|+.||.+|||++.||.+||+| |+|.+|++++
T Consensus 8 rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 8 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 34445599999999999999999999999999999999999999999999999 9999999875
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=4.2e-16 Score=120.91 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+++++.|+++++.+|+.||.+|..+|||+.++++.||.++||++.||.+||+| |+|.+|+
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35555699999999999999999999999999999999999999999999999 7777664
No 6
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.60 E-value=6.1e-16 Score=118.61 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhcC
Q 012071 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMK 469 (471)
Q Consensus 412 rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp~ 469 (471)
++.|+++++.+|+.||..|..+|||+.++++.||.++||++.||.+||+|||+.+|++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4569999999999999999999999999999999999999999999999955555543
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.58 E-value=1.3e-15 Score=121.26 Aligned_cols=61 Identities=25% Similarity=0.385 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcC
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMK 469 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~ 469 (471)
+|+++.|+++++.+|+.||.+|..+|||+..++..||..+||+..||.+||+| |+|.++.+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 45666699999999999999999999999999999999999999999999999 77766654
No 8
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.57 E-value=1.2e-15 Score=124.84 Aligned_cols=61 Identities=25% Similarity=0.385 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcC
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMK 469 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~ 469 (471)
+|+++.|+++++.+|+.||.+|..+|||+.++++.||.++||++.||.+||+| |+|.+|.+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 45566699999999999999999999999999999999999999999999999 77777654
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=2.5e-15 Score=122.85 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCCC
Q 012071 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKFT 471 (471)
Q Consensus 414 glpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i~ 471 (471)
.|+.+++.+|+.||..|..+|||+..++..||.++||+..||.+||+| |+|.++..|+
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 399999999999999999999999999999999999999999999999 8887776653
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.56 E-value=2.6e-15 Score=123.49 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
+++..|+++++.+|+.||..|..+|||+..+|+.||.++||++.||.+||+|||+.||
T Consensus 29 k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 29 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3344599999999999999999999999999999999999999999999999555554
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=5.7e-13 Score=109.03 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCC
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKF 470 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i 470 (471)
.+++.|+++++.+|+.||.. +|||+.++++.||+.|||++.||.+||+| |.|.+|..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45566999999999999995 59999999999999999999999999999 776666543
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.35 E-value=3.8e-13 Score=103.13 Aligned_cols=55 Identities=20% Similarity=0.086 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELW 466 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~ 466 (471)
+|++..|+.+++.+|+.||..| |||+..++..||..+||+..||.+||+|||..+
T Consensus 6 rr~Rt~ft~~q~~~Le~~f~~~---~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 6 PKGKSSISPQARAFLEEVFRRK---QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp ------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHhC---CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 3444559999999999999865 999999999999999999999999999944443
No 13
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=9.5e-13 Score=106.44 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=51.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEH-FLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH-~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.||..+ ..+|||+..+++.||.++||++.||.+||+| |.|.+|.
T Consensus 9 rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 9 LQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 3444459999999999999876 6669999999999999999999999999999 6655543
No 14
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.27 E-value=3e-12 Score=99.89 Aligned_cols=59 Identities=24% Similarity=0.137 Sum_probs=51.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhcCC
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIMKF 470 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp~i 470 (471)
+|++..|+.+++.+|+.||.. +|||+..+++.||..+||+..||.+||+| |.+.+|..|
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 455566999999999999985 69999999999999999999999999999 766665543
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=2.6e-12 Score=97.52 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||.|||..+|
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 45566999999999999984 69999999999999999999999999999444444
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.6e-12 Score=98.03 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.||.. +|||+..+++.||.++||++.||.+||+| |.|.+|.
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 8 RRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 455556999999999999985 69999999999999999999999999999 6665554
No 17
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.21 E-value=1.2e-11 Score=98.67 Aligned_cols=58 Identities=10% Similarity=-0.048 Sum_probs=49.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhc
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIM 468 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp 468 (471)
.+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||.|||..||.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 64 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHH
Confidence 3455556999999999999985 599999999999999999999999999994444443
No 18
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=9.1e-12 Score=98.32 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.+|.. +|||+..+++.||..+||++.||.+||+| |.+.+|.
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 8 RKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 455556999999999999984 69999999999999999999999999999 6555543
No 19
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.21 E-value=9e-12 Score=93.91 Aligned_cols=54 Identities=19% Similarity=0.061 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELW 466 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~ 466 (471)
|++..|+.+++.+|+.+|. .+|||+..++..||..+||+..||.+||+|||..+
T Consensus 4 r~Rt~~t~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 4 KPRVLFSQAQVYELERRFK---QQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 4444599999999999997 67999999999999999999999999999944443
No 20
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=96.96 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.||. .+|||+..++..||..+||++.||.+||.| |.+.++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFR---VNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 45566699999999999997 579999999999999999999999999999 6655543
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.20 E-value=9.3e-12 Score=98.27 Aligned_cols=56 Identities=20% Similarity=0.039 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
++++..|+.+++.+|+.||.. +|||+..+++.||.++||++.||.+||.| |.|.++
T Consensus 8 ~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2e1o_A 8 KGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 64 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCC
Confidence 455556999999999999984 69999999999999999999999999999 555444
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=9.8e-12 Score=98.13 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.||. .+|||+..+++.||..+||++.||.+||+| |.|.+|.
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 8 RKPRTIYSSFQLAALQRRFQ---KTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCSSCSSCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 44555699999999999997 579999999999999999999999999999 6665553
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.19 E-value=1.2e-11 Score=94.74 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||.| |.+.+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 456667999999999999985 59999999999999999999999999999 666554
No 24
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.19 E-value=9.6e-12 Score=95.61 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|.. +|||+..+++.||..+||+..||.+||.| |.+.+|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 355556999999999999984 69999999999999999999999999999 555443
No 25
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=97.47 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.||.. +|||+..+++.||..+||++.||.+||+| |.+.+|.
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 8 RSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 445556999999999999985 69999999999999999999999999999 6655543
No 26
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=97.75 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=50.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
.+|++..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+| |.+.+|.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 3455556999999999999985 59999999999999999999999999999 6555543
No 27
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.17 E-value=1.5e-11 Score=95.22 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||.| |.+.+|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 4 KRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 355556999999999999984 69999999999999999999999999999 555444
No 28
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=98.98 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.||.. +|||+..+++.||.++||++.||.+||.| |.|.+|
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 8 KRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 455556999999999999984 59999999999999999999999999999 665554
No 29
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=98.67 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.||.. +|||+..+++.||.++||++.||.+||.| |.|.+|.
T Consensus 18 rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 18 KRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp TTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 444556999999999999985 49999999999999999999999999999 6665554
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.16 E-value=1.9e-11 Score=99.04 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=49.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.+|++..|+.+++.+|+.||.. +|||+..++..||.++||++.||.+||+| |.|.+|
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhh
Confidence 3445555999999999999985 69999999999999999999999999999 555444
No 31
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=98.35 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.+|.. +|||+..+++.||..+||++.||.+||+| |.+.+|.
T Consensus 18 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 18 RRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 444555999999999999985 69999999999999999999999999999 6555543
No 32
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.15 E-value=2.6e-11 Score=101.59 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
++.+.|+.+++.+|+.||.. ++||+..++..||..+||++.||.+||+|||..|+
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~r 67 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKA 67 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHH
Confidence 44557999999999999984 69999999999999999999999999999554443
No 33
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.14 E-value=2.9e-11 Score=97.21 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=49.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.+|++..|+.+++.+|+.+|.. +|||+..+++.||..+||++.||.+||+| |.+.++
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhh
Confidence 3444555999999999999984 69999999999999999999999999999 655544
No 34
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.14 E-value=2.4e-11 Score=93.63 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||.| |.+.+|
T Consensus 5 r~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 5 KMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ---CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 44556999999999999984 69999999999999999999999999999 555443
No 35
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.13 E-value=2.3e-11 Score=93.18 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 412 rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||.| |.+.+|
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 456999999999999974 69999999999999999999999999999 555443
No 36
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.13 E-value=3.5e-11 Score=94.64 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|. .+|||+..++..||..+||+..||.+||.| |.|.++
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk 59 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFL---QGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 59 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHH
Confidence 34555699999999999997 579999999999999999999999999999 665544
No 37
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.12 E-value=5e-11 Score=97.33 Aligned_cols=58 Identities=9% Similarity=-0.053 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhh
Q 012071 409 WRPQRGLPESSVSILRAWLFE-HFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELW 466 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~e-H~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~ 466 (471)
+|++..|+.+++.+|+.+|.. ++.+|||+..+++.||..+||++.||++||+| |.+.+
T Consensus 18 rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 18 KRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 344445999999999998885 46689999999999999999999999999999 65544
No 38
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=3.5e-11 Score=97.21 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|.. +|||+..+++.||.++||++.||.+||.| |.+.+|
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk 64 (80)
T 2dms_A 8 RRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 64 (80)
T ss_dssp CCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhH
Confidence 445556999999999999985 69999999999999999999999999999 555444
No 39
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=3.7e-11 Score=97.25 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|. .+|||+..++..||..+||++.||.+||.| |.+.+|
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (80)
T 2cue_A 8 QRNRTSFTQEQIEALEKEFE---RTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64 (80)
T ss_dssp CCCCCCSCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHH
Confidence 44555699999999999997 579999999999999999999999999999 555443
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=6.2e-11 Score=94.00 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+++..|+.+++.+|+.+|.. .+|||+..+++.||.++||++.||.+||.| |.+.+|
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk 59 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhh
Confidence 45566999999999999972 269999999999999999999999999999 655544
No 41
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.7e-11 Score=95.76 Aligned_cols=55 Identities=25% Similarity=0.207 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+.+..|+.+++.+|+.||.. +|||+..+++.||+++||++.||.+||.| |.|.+|
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 34556999999999999984 69999999999999999999999999999 555444
No 42
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.09 E-value=2e-11 Score=95.80 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.||. .+|||+..++..||..+||++.||.+||.| |.+.+|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 60 (68)
T 1yz8_P 4 RRQRTHFTSQQLQQLEATFQ---RNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60 (68)
T ss_dssp SCSCCCCCHHHHHHHHHHHT---TCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHH
Confidence 34555699999999999997 479999999999999999999999999999 655444
No 43
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.09 E-value=4.1e-11 Score=94.33 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
|++..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||.| |.+.+|
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 59 (68)
T 1ahd_P 4 RGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59 (68)
T ss_dssp CTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhH
Confidence 44455999999999999984 59999999999999999999999999999 665554
No 44
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.09 E-value=3.7e-11 Score=96.10 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 413 Rglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
|.-+++++.+|+.+|.. +|||+..|+..||..|||++.||.+||.|||-.||
T Consensus 9 ~~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 9 RKKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQ 60 (66)
T ss_dssp --CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhh
Confidence 44589999999999994 59999999999999999999999999999444444
No 45
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.08 E-value=7.4e-11 Score=92.76 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
|++..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||.| |.+.++
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 59 (68)
T 1ftt_A 4 KRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59 (68)
T ss_dssp SSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhh
Confidence 44445999999999999984 59999999999999999999999999999 655544
No 46
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=9.2e-11 Score=97.31 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
++.+.++.+++.+|+.+|.. +|||+..+++.||.++||++.||.+||.|||.+||
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r 69 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRD 69 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHH
Confidence 34455999999999999985 59999999999999999999999999999444444
No 47
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.07 E-value=8.6e-11 Score=94.44 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=49.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||.| |.+.+|
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 70 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3445556999999999999984 59999999999999999999999999999 555443
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=93.57 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
++++.|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||.| |.+.+|
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNA 64 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHH
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHH
Confidence 45556999999999999985 59999999999999999999999999999 655544
No 49
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.06 E-value=9.8e-11 Score=95.11 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=48.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+| |.+.+|
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444555999999999999984 69999999999999999999999999999 555443
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.06 E-value=8.4e-11 Score=93.60 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+++..|+.+++.+|+.+|.. .+|||+..++..||..+||++.||.+||.| |.+.+|
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk 60 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHH--TTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 44455999999999999972 259999999999999999999999999999 655444
No 51
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.06 E-value=8.7e-11 Score=95.52 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|.. +|||+..+++.||..+||++.||.+||.| |.+.+|
T Consensus 21 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 77 (81)
T 1b8i_A 21 RRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77 (81)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhh
Confidence 345556999999999999985 69999999999999999999999999999 555544
No 52
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.06 E-value=8e-11 Score=106.67 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=49.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.+|++..|+.+++.+|+.||..+ |||+..+++.||.++||++.||.+||+| |+|.++
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~ 154 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKEN---KRPSKELQITISQQLGLELSTVSNFFMNARRRSLD 154 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccc
Confidence 34555569999999999999965 9999999999999999999999999999 766655
No 53
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.05 E-value=8.3e-11 Score=89.20 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 414 glpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||.| |.|.+|
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4899999999999984 69999999999999999999999999999 555443
No 54
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=92.33 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
|++..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||.| |.+.+|
T Consensus 11 r~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 11 RNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp SCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 34445999999999999984 58999999999999999999999999999 555444
No 55
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=91.94 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=49.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.++.+..|+.+++.+|+.+|.. +|||+..+++.||..+||++.||.+||+| |.+.+|
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 63 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRN 63 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHh
Confidence 3455566999999999999984 69999999999999999999999999999 555443
No 56
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.02 E-value=1.5e-10 Score=96.61 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+| |.|.+|
T Consensus 18 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 74 (93)
T 3a01_A 18 KKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74 (93)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhh
Confidence 344445999999999999985 59999999999999999999999999999 555444
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=103.31 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
+|++..|+.+++.+|+.||.. +|||+..++..||.++||++.||.+||+|||..||
T Consensus 94 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~K 149 (151)
T 3d1n_I 94 RKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLK 149 (151)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccC
Confidence 344445999999999999985 69999999999999999999999999999555554
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.01 E-value=1.7e-10 Score=94.85 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=47.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
.+|++..|+.+++.+|+.+|. .+|||+..+++.||..+||++.||.+||.|||..||
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFH---FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhH
Confidence 445556699999999999997 579999999999999999999999999999444444
No 59
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.01 E-value=1.9e-10 Score=96.00 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CCchhhcccccc-cchhhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTG---------------LSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TG---------------Ls~sQVsNWFiN-RrRl~K 467 (471)
+|++..|+.+++.+|+.||.+ +|||+..+++.||..+| |+..||.+||+| |.+.++
T Consensus 8 rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 8 RGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp CCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 344445999999999999996 69999999999999999 999999999999 555443
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.01 E-value=2e-10 Score=96.11 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
+|++..|+.+++.+|+.+|.. +|||+..+++.||.++||++.||.+||+| |.+.+|.
T Consensus 26 ~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 26 TGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp -CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 455566999999999999984 69999999999999999999999999999 5555543
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.99 E-value=1.3e-10 Score=93.14 Aligned_cols=58 Identities=12% Similarity=-0.043 Sum_probs=50.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhcC
Q 012071 409 WRPQRGLPESSVSILRAWL-FEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMK 469 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl-~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp~ 469 (471)
.++++.++.+++.+|+..| . .++||+..++..||.++||++.||.+||+|||..||+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~---~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVS---VTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHH---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3556668889999999999 5 56999999999999999999999999999966666664
No 62
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.98 E-value=2.5e-10 Score=95.56 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=48.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.+|++..|+.+++.+|+.+|. .+|||+..++..||..+||++.||.+||+| |.+.+|
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 91 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFH---FNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 91 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhH
Confidence 345555699999999999997 569999999999999999999999999999 655544
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=98.97 E-value=3e-10 Score=102.02 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp 468 (471)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|||..||.
T Consensus 88 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 88 RKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 445556999999999999985 699999999999999999999999999995555543
No 64
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.95 E-value=5.1e-10 Score=91.66 Aligned_cols=57 Identities=9% Similarity=-0.060 Sum_probs=47.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEH--FLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELW 466 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH--~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~ 466 (471)
+|++..|+.+++.+|+ -|.++ +.+|||+..+++.||.++||++.||++||+| |.+.+
T Consensus 18 rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 18 KRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp SCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 3444459999999999 57764 3389999999999999999999999999999 55443
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=98.93 E-value=5.3e-10 Score=101.54 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=48.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp 468 (471)
+|++..|+.+++.+|+.+|.. +|||+..++..||.++||++.||.+||+|||..||.
T Consensus 102 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 102 RKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp --CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 344445999999999999985 699999999999999999999999999995554443
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.93 E-value=4e-10 Score=103.15 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhc
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIM 468 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp 468 (471)
+|++..|+..++.+|+.+|.. +|||+..++..||.++||++.||.+||+|||..||.
T Consensus 100 rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 100 RKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTB
T ss_pred CCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhh
Confidence 344455999999999999985 699999999999999999999999999995555554
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=7.5e-10 Score=86.94 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhh
Q 012071 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELW 466 (471)
Q Consensus 413 Rglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~ 466 (471)
-.+.++++.+|+.+|. .+|||+..++..||+++||++.||.+||+| |.|.+
T Consensus 8 ~~p~~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~ 59 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYA---LNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQI 59 (64)
T ss_dssp CCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCS
T ss_pred CCccHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCC
Confidence 3477999999999997 579999999999999999999999999999 66544
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.88 E-value=5.7e-10 Score=100.96 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhcC
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMK 469 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp~ 469 (471)
+|++..|+.+++.+|+.||. .+|||+..++..||.++||++.||.+||+|||..||++
T Consensus 97 rr~Rt~ft~~Q~~~Le~~F~---~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 97 KRKRTSIENRVRWSLETMFL---KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCCCCCCHHHHHHHHTTTT---TCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCcccCHHHHHHHHHHHc---cCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 34444599999999999996 67999999999999999999999999999966666653
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.86 E-value=1.6e-09 Score=87.67 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=48.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccch
Q 012071 408 AWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLE 464 (471)
Q Consensus 408 ~~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrR 464 (471)
.+|++..|+.++..+|+..|.. .+|||+.++++.||.+|||++.+|..||+|||-
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 4566667999999999999884 169999999999999999999999999999443
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.82 E-value=1.9e-09 Score=86.22 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhhc
Q 012071 415 LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWIM 468 (471)
Q Consensus 415 lpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~Kp 468 (471)
++..++.+|+.+|.. +|||+..++..||.++||++.||++||+| |.|.+|.
T Consensus 11 ~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 11 MSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 789999999999974 59999999999999999999999999999 5554443
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.79 E-value=2e-09 Score=85.32 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhhcC
Q 012071 418 SSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWIMK 469 (471)
Q Consensus 418 ~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~Kp~ 469 (471)
+...+|+..|.. .++||+..++..||+++||++.||..||+|||-.+||.
T Consensus 10 ~~~~~LE~~F~~--~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 10 QPNAILEKVFTA--ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp CHHHHHHHHHHT--TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 457889888842 35899999999999999999999999999977777765
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.5e-09 Score=90.37 Aligned_cols=55 Identities=16% Similarity=-0.028 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCCchhhcccccc-cchhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQT---------------------GLSKNQVRKIEIL-LLELW 466 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~T---------------------GLs~sQVsNWFiN-RrRl~ 466 (471)
+|.+..|+..+..+|+.+|. .+|||+..+++.||..+ +|++.+|.+||+| |.+.+
T Consensus 7 Rr~Rt~ft~~ql~~Le~~F~---~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 7 GRNRFKWGPASQQILYQAYD---RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCCCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 44444599999999999998 56899999999999999 7999999999999 55543
No 73
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.77 E-value=2.4e-09 Score=105.62 Aligned_cols=53 Identities=21% Similarity=0.071 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccccchhhh
Q 012071 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEILLLELWI 467 (471)
Q Consensus 412 rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiNRrRl~K 467 (471)
++.|.+.++..|+.+|. .||||+..+|++||++|||++.||++||+|||+++|
T Consensus 369 ~~~~~~~q~~~Le~~f~---~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFR---RKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHh---cCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34589999999999997 459999999999999999999999999999655554
No 74
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.69 E-value=7.9e-09 Score=87.89 Aligned_cols=55 Identities=18% Similarity=0.044 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CCchhhcccccc-cchhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQ------------------TG---LSKNQVRKIEIL-LLELW 466 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~------------------TG---Ls~sQVsNWFiN-RrRl~ 466 (471)
+|++..|+..++.+|+.+|. .+|||+..+++.||.. +| |+..||.+||+| |.+.+
T Consensus 10 rr~Rt~ft~~Ql~~LE~~F~---~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 10 RRNRFKWGPASQQILFQAYE---RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ---CCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCcCcCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 34444599999999999998 5699999999999999 88 999999999999 65543
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.54 E-value=4e-08 Score=94.53 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CCchhhcccccc-cch
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTG---------------------LSKNQVRKIEIL-LLE 464 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TG---------------------Ls~sQVsNWFiN-RrR 464 (471)
|.|..|++.+..+|+.||.. +|||+..+|+.||..+| ||..||.|||+| |.+
T Consensus 144 R~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 144 RNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 33345999999999999995 69999999999999988 899999999999 544
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.53 E-value=2.1e-08 Score=94.52 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=47.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CCchhhcccccccchhh
Q 012071 409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTG---------------------LSKNQVRKIEILLLELW 466 (471)
Q Consensus 409 ~r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TG---------------------Ls~sQVsNWFiNRrRl~ 466 (471)
+|++..|+..+..+|+.+|..+ |||+..+|+.||..++ |+..||.+||+|||..+
T Consensus 116 rr~R~~ft~~ql~~Le~~F~~~---~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 116 RRNRFKWGPASQQILFQAYERQ---KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHH---CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCcccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 3444459999999999999965 9999999999999999 99999999999944443
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=9.6e-08 Score=77.41 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cch
Q 012071 417 ESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLE 464 (471)
Q Consensus 417 k~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrR 464 (471)
+++..+|++.|. .+|+|+.+|+..||..+||.+..|+.||+| |.+
T Consensus 14 k~ql~~Lk~yF~---~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYA---MNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 778999999999 569999999999999999999999999999 643
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=93.54 E-value=0.017 Score=41.30 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=11.8
Q ss_pred hhhcccccccchhhhc
Q 012071 453 NQVRKIEILLLELWIM 468 (471)
Q Consensus 453 sQVsNWFiNRrRl~Kp 468 (471)
.||..||.|||-+||.
T Consensus 1 rQVkIWFQNRRaK~Kk 16 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKK 16 (37)
T ss_dssp CCTTTTTTCSHHHHTS
T ss_pred CCceeccHHHHHHHHH
Confidence 4899999995555543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.27 E-value=0.081 Score=42.78 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc
Q 012071 415 LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL 461 (471)
Q Consensus 415 lpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN 461 (471)
.++...++|++.|.+|. ...+++...|+.+++++-.||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~hk---~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQ---QLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTC---CCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhc---ccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 46667889999999883 678899999999999999999999965
No 80
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=72.42 E-value=14 Score=39.37 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHH-----
Q 012071 289 SHAERQELLNKKTKLL-------------SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISR----- 350 (471)
Q Consensus 289 s~~er~elq~kk~KLl-------------~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~sr----- 350 (471)
|.-+|..||.+.+||. .+|+|++||.+--..=.+.++.. ..|+|.|++..+++.+|+..+.
T Consensus 356 s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~-giVpGGGa~e~~~s~~L~~~~~~~~g~ 434 (543)
T 1we3_A 356 SEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEE-GIVPGGGVTLLRAISAVEELIKKLEGD 434 (543)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH-CEEETTTHHHHHHHHHHHHHHTTCCHH
T ss_pred chhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcc-CcCCCccHHHHHHHHHHHHHhhccCch
Confidence 4567888999999984 58888888887777766666665 3899999999999988887654
Q ss_pred ---hhhHHHHHHHHHHHHHhhhcC
Q 012071 351 ---HFRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 351 ---hfr~lrd~I~~qi~~~~~~~g 371 (471)
-++.+.+|+..=.+.+....|
T Consensus 435 ~q~~i~~~a~ALe~ip~~La~NaG 458 (543)
T 1we3_A 435 EATGAKIVRRALEEPARQIAENAG 458 (543)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 234666776665555555444
No 81
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=65.15 E-value=10 Score=40.51 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHH------
Q 012071 289 SHAERQELLNKKTKLL-------------SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTIS------ 349 (471)
Q Consensus 289 s~~er~elq~kk~KLl-------------~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~s------ 349 (471)
|.-+|..||.+.+||. ..|+|++||.+--..=.+.++.. ..|+|.|++..+++.+|+..+
T Consensus 357 s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~-giVpGGGa~e~~~s~~L~~~~~~~g~~ 435 (547)
T 1kp8_A 357 SDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE-GVVAGGGVALIRVASKLADLRGQNADQ 435 (547)
T ss_dssp SHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHH-CEEETTTHHHHHHHHHTTTCCCSSHHH
T ss_pred chhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccC-CEEeCCcHHHHHHHHHHHHHhccCchH
Confidence 4568888999999985 58888888888777777776666 399999999888888876543
Q ss_pred -HhhhHHHHHHHHHHHHHhhhcC
Q 012071 350 -RHFRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 350 -rhfr~lrd~I~~qi~~~~~~~g 371 (471)
--++.+.+|+..=.+.+....|
T Consensus 436 q~~i~~~a~ALe~ip~~la~NaG 458 (547)
T 1kp8_A 436 NVGIKVALRAMEAPLRQIVLNCG 458 (547)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 1245666766666666555444
No 82
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=50.42 E-value=80 Score=27.91 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcccccCCchhhcHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012071 290 HAERQELLNKKTKLLSMLEEVDRGYKQY---YHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVT 366 (471)
Q Consensus 290 ~~er~elq~kk~KLl~mLdEVdrRY~qY---~~qmq~v~ssF~~vag~g~a~~yt~lal~~~srhfr~lrd~I~~qi~~~ 366 (471)
-.|=++|+.+-.....=|.+.+.++++- .+++...+.++....+.. .|||.+....|.+-++.|++-|...=..+
T Consensus 44 leEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~--npYT~it~~~l~~~W~~l~~li~~Rd~~L 121 (129)
T 1wlx_A 44 IEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGS--NPYTTVTPQIINSKWEKVQQLVPKRDHAL 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSS--CSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCC--CCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999899999999999999876 578888888888655544 48999999999999999999998766655
Q ss_pred hhh
Q 012071 367 GRS 369 (471)
Q Consensus 367 ~~~ 369 (471)
.+.
T Consensus 122 q~E 124 (129)
T 1wlx_A 122 LEE 124 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 83
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=45.29 E-value=26 Score=37.45 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHH
Q 012071 289 SHAERQELLNKKTKLL-------------SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQ 346 (471)
Q Consensus 289 s~~er~elq~kk~KLl-------------~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~ 346 (471)
|.-||..||.+.+||- .+|+|++||.+--..-.+.++.. ..|+|.|++..+++.+|+
T Consensus 356 s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~-giVpGGGa~e~~~s~~L~ 425 (546)
T 3rtk_A 356 SDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEE-GIVAGGGVTLLQAAPTLD 425 (546)
T ss_dssp CHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHH-CEEETTTHHHHTTGGGST
T ss_pred chhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhC-CcccCCcHHHHHHHHHHH
Confidence 4567888999999986 47899999888777777776665 389999998877665554
No 84
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=43.14 E-value=14 Score=39.29 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHH------
Q 012071 289 SHAERQELLNKKTKLL-------------SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTIS------ 349 (471)
Q Consensus 289 s~~er~elq~kk~KLl-------------~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~s------ 349 (471)
|.-+|..||.+.+||. ..|+|++||.+--..=.+.++.. ..|+|.|++..+++.+|+..+
T Consensus 358 s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~-giVpGGGa~e~~~s~~L~~~~~~~g~~ 436 (545)
T 1iok_A 358 SDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE-GIVVGGGVALVQGAKVLEGLSGANSDQ 436 (545)
T ss_dssp CSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH-CEEETTTHHHHHHGGGGGSCCCSSHHH
T ss_pred chhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCchHHHHHHHHHHHHHhccCchH
Confidence 3447888899988874 68889988888777777766665 389999998887777776432
Q ss_pred -HhhhHHHHHHHHHHHHHhhhcC
Q 012071 350 -RHFRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 350 -rhfr~lrd~I~~qi~~~~~~~g 371 (471)
--++.+.+|+..=.+.+....|
T Consensus 437 q~~i~~~a~ALe~ip~~La~NaG 459 (545)
T 1iok_A 437 DAGIAIIRRALEAPMRQIAENAG 459 (545)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 1234666666666665555444
No 85
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=42.66 E-value=32 Score=23.18 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.4
Q ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 012071 289 SHAERQE-LLNKKTKLLSMLEEVDRGYK 315 (471)
Q Consensus 289 s~~er~e-lq~kk~KLl~mLdEVdrRY~ 315 (471)
|+.||+. ||.+|.+|+. +-.|||-
T Consensus 2 s~~eRq~~Lq~Rk~~mi~---~ARrryl 26 (28)
T 3h8k_B 2 SADERQRMLVQRKDELLQ---QARKRFL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 6788887 8888887654 6788874
No 86
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=38.71 E-value=50 Score=27.25 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 012071 298 NKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGR 368 (471)
Q Consensus 298 ~kk~KLl~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~srhfr~lrd~I~~qi~~~~~ 368 (471)
....++++++.|+|.+|.....++...+..|-.-.|--...+=- -.++.|.+.|..++.--.+.|..+.+
T Consensus 18 ~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~-~~l~~I~~~~~~~~~l~dEKv~lA~~ 87 (104)
T 4afl_A 18 FELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKL-ALLKQIQEAYGKCKEFGDDKVQLAMQ 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458889999999999999999999888886544322222211 22366788887666666666655544
No 87
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=37.23 E-value=75 Score=33.39 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+ |-+.+|-..++ .|+|.|++..+++.+|+..++. ++.+.+|++.=.+.+....|
T Consensus 371 ~~l~E~kr~i~---DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 445 (515)
T 3iyg_H 371 QFMEETERSLH---DAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAG 445 (515)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667776654 55555656655 6899999999888888876543 44666666666665555444
No 88
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=36.80 E-value=35 Score=24.90 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc
Q 012071 412 QRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL 461 (471)
Q Consensus 412 rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN 461 (471)
++.++.+.+..+...+... .+.......+|++.|++...|.+|...
T Consensus 3 r~~ys~efK~~~~~~~~~g----~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND----NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC----TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC----CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4568877776554444322 111123578999999999999999765
No 89
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=36.15 E-value=44 Score=27.50 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL 461 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN 461 (471)
++++.|+.+.+..+..++.++ +.++. ..+|+..|++.+.|..|..+
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~---g~~~~---~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEEN---PDLRK---GEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHC---TTSCH---HHHHHHHTCCHHHHHHHHHT
T ss_pred CcceeCCHHHHHHHHHHHHHC---CCCcH---HHHHHHhCCCHHHHHHHHhc
Confidence 356679999997777776543 44442 36889999999999999887
No 90
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=35.47 E-value=1.1e+02 Score=27.58 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHHhhhHHHHHHHHHHHHHhhhc
Q 012071 292 ERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSL 370 (471)
Q Consensus 292 er~elq~kk~KLl~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~srhfr~lrd~I~~qi~~~~~~~ 370 (471)
=.++.+.-+++|...++||..|=..|.++++.++ .+|+.=.-+.+.=++..||..+...+..+++.|
T Consensus 93 l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l------------~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 93 LSKELQAAQARLGADMEDVRGRLVQYRGEVQAML------------GQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST------------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4567888899999999999999999999988654 335554445566677778888877777777654
No 91
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=35.09 E-value=92 Score=33.10 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+--. .+|-...+ .|+|.|++..+++.+|+..++- ++.+.+|+..=.+.+....|
T Consensus 389 ~~l~E~er~l~DAl---~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 463 (553)
T 3ko1_A 389 RLVDETERALRDAL---GTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAG 463 (553)
T ss_dssp THHHHHHHHHHHHH---HHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---HHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcC
Confidence 46677777765544 44445444 7899999999998888876543 44666666665555555433
No 92
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=35.02 E-value=87 Score=32.84 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+-- +.+|-..++ .|+|.|++...++.+|+..++. ++.+.+|+..=.+.+....|
T Consensus 368 ~~l~E~kr~l~DA---l~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG 442 (513)
T 3iyg_B 368 QILDEAERSLHDA---LCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAG 442 (513)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667777766544 445555554 6899999999998888876543 34666666666665555444
No 93
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=34.30 E-value=90 Score=32.66 Aligned_cols=64 Identities=11% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+ |-+.+|-+..+ .|+|.|++..+++.+|+..++- ++.+.+|+..=.+.+....|
T Consensus 367 ~~l~E~kr~i~---DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 441 (512)
T 3iyg_Q 367 NLMDDIERAVD---DGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSG 441 (512)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677777654 55566666665 7899999999998888876543 34566666665555555444
No 94
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=33.66 E-value=69 Score=34.46 Aligned_cols=64 Identities=19% Similarity=0.349 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+- -+.+|-...+ .|+|.|++..+++.+|+..++- ++.+.+|+..=.+.++...|
T Consensus 443 ~~l~E~kr~i~D---Al~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 517 (590)
T 3p9d_C 443 DILNEIDRNLQD---AMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAG 517 (590)
T ss_dssp TTHHHHHHHHHH---HHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777654 4555555544 6899999999988888875543 45677776666666655444
No 95
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=33.12 E-value=96 Score=32.54 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+ +-+.+|-..++ .|+|.|++..+++.+|+..++. ++.+.+|+..=.+.+....|
T Consensus 375 ~~l~E~kr~l~---DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG 449 (518)
T 3iyg_D 375 LVIEEAERSIH---DALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAG 449 (518)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46777777755 44455555554 7899999999888888876542 34566666655555555444
No 96
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.12 E-value=45 Score=21.80 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc
Q 012071 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL 461 (471)
Q Consensus 414 glpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN 461 (471)
.++.+....+...+.+. + ....+|+.+|+++.-|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46776664443434332 2 2567899999999999999866
No 97
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=32.77 E-value=96 Score=32.75 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHH--------hhhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISR--------HFRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~sr--------hfr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++|+.+--..=.+.++..=-.|+|.|++...++.+|+..++ -++.+.+|+..=.+.+....|
T Consensus 380 ~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG 454 (543)
T 1a6d_B 380 HVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAG 454 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4677888777655555555444433789999999999888887664 234666776666665555444
No 98
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=32.65 E-value=43 Score=26.48 Aligned_cols=39 Identities=10% Similarity=0.087 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhccccc
Q 012071 419 SVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEI 460 (471)
Q Consensus 419 a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFi 460 (471)
.++.+..|+.+|...|-++. ..||+..|+++..+...|.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHH
Confidence 46677889999977754554 5688888999988887764
No 99
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=32.46 E-value=98 Score=32.70 Aligned_cols=64 Identities=20% Similarity=0.381 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+- -+.+|-...+ .|+|.|++..+++.+|+..++. ++.+.+|++.=.+.+....|
T Consensus 375 ~~l~E~kr~l~D---Al~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 449 (543)
T 3ruv_A 375 HVIEEVARAVDD---AVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAG 449 (543)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456677776654 4445555554 7899999999999988876653 34666666655555554433
No 100
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=32.16 E-value=92 Score=32.52 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHH--------hhhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISR--------HFRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~sr--------hfr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+--..=.+.++..=-.|+|.|++...++.+|+..++ -++.+.+|+..=.+.+....|
T Consensus 333 ~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG 407 (500)
T 3aq1_B 333 HVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAG 407 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4677888776655555444444433789999999999988887664 234666666655555555444
No 101
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=31.72 E-value=1e+02 Score=32.33 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---cccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSF---DMVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF---~~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++|+. +|-+..|-..+ ..|+|.|++...++.+|+..++- ++.+.+|++.=.+.+....|
T Consensus 370 ~~l~E~er~i---~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG 444 (515)
T 3iyg_G 370 EILSEVERNL---QDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCG 444 (515)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667777765 45555666665 37899999988888888765432 45667777666666665544
No 102
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=31.25 E-value=1.1e+02 Score=32.00 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+ +-+.+|-+..+ .|+|.|++..+++.+|+..++. ++.+.+|+..=.+.+....|
T Consensus 371 ~~l~E~kr~i~---DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG 445 (515)
T 3iyg_E 371 MIIEEAKRSLH---DALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSG 445 (515)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46667666654 45555555555 7899999999888888876543 34566666665555555444
No 103
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=30.97 E-value=1.1e+02 Score=32.16 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+- =+.+|-...+ .|+|.|++...++.+|+..++. ++.+.+|++.=.+.+....|
T Consensus 375 ~~l~E~kr~i~D---Al~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 449 (527)
T 3p9d_B 375 QTLDEAERSLHD---ALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAG 449 (527)
T ss_dssp THHHHHHTHHHH---HHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 356777777654 4445555554 7899999999988888876543 44667776666666655444
No 104
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=30.32 E-value=42 Score=26.42 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc
Q 012071 410 RPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL 461 (471)
Q Consensus 410 r~rRglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN 461 (471)
++++.++.+.+.....++.+. . ....+|+++|+++..|.+|...
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g--~------s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG--E------SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT--C------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC--C------CHHHHHHHHCcCHHHHHHHHHH
Confidence 445668888764444444322 1 2567899999999999999755
No 105
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=29.93 E-value=1.1e+02 Score=32.34 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+ |-+.+|-...+ .|+|.|++...++.+|+..++- ++.+.+|++.=.+.+....|
T Consensus 384 ~~l~E~kr~l~---DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 458 (550)
T 3p9d_G 384 QVIAEVERSLH---DAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAG 458 (550)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSC
T ss_pred HHHHHHHHHHH---hHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667777655 44555555554 7899999999888888876543 44666666665555554433
No 106
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=28.66 E-value=1.3e+02 Score=31.55 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++|+.. +-+.+|-..++ .|+|.|++...++.+|+..++- ++.+.+|++.=.+.++...|
T Consensus 377 ~~l~E~er~l~---Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG 451 (529)
T 3iyg_A 377 FMCDEMERSLH---DALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAA 451 (529)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46777777754 45555555555 7899999998888888876543 33555555554554544433
No 107
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=27.72 E-value=1.2e+02 Score=32.19 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+--..=.+.++..=-.|+|.|++...++.+|+..++. ++.+.+|+..=.+.+....|
T Consensus 382 ~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG 456 (548)
T 1q3q_A 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAG 456 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677777766555444444433237899999999998888876542 34566666555555554434
No 108
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=26.27 E-value=1.2e+02 Score=32.14 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHH--------hhhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISR--------HFRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~sr--------hfr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++|+.+--..=.+.++..=-.|+|.|++...++.+|+..++ -++.+.+|+..=.+.+....|
T Consensus 379 ~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG 453 (545)
T 1a6d_A 379 HVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAG 453 (545)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567777776655554444444323789999999999988887654 234666666666666555444
No 109
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=25.26 E-value=21 Score=28.11 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 414 GLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 414 glpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
.||.....+|.-.+++.+ .-..+|..+|++..-|.++... |+++++
T Consensus 37 ~L~~~~r~vl~l~~~~g~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--------STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 489999999977665542 2467899999999999999998 887765
No 110
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=25.18 E-value=2.8e+02 Score=22.62 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhhcccccCCchhhcHHHHHHH---HHHhhhHHHH
Q 012071 295 ELLNKKTKLLSMLEEVDRGYKQYYH------------QMQIVASSFDMVAGHGAAKSYTVLALQT---ISRHFRSLRD 357 (471)
Q Consensus 295 elq~kk~KLl~mLdEVdrRY~qY~~------------qmq~v~ssF~~vag~g~a~~yt~lal~~---~srhfr~lrd 357 (471)
+++..=.|...++.+++.+++.|.. .+..+-..|..+-.++--+ ..+|-++ |.||.|.|-.
T Consensus 26 ~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEK--v~lA~~~~dlvdkhirrLD~ 101 (104)
T 4afl_A 26 LMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDK--VQLAMQTYEMVDKHIRRLDT 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 3555567788889999999999984 5677788888777777544 4555555 9999998753
No 111
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.00 E-value=2.5e+02 Score=23.08 Aligned_cols=37 Identities=11% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 012071 299 KKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHG 335 (471)
Q Consensus 299 kk~KLl~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g 335 (471)
-+.+|-.+.+||-++.++.+..++.+-...+...|.+
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~ 84 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4556778889999999999999999988777654443
No 112
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=24.86 E-value=1.1e+02 Score=32.55 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+ +-+.+|-...+ .|+|.|++...++.+|+..++. ++.+.+|++.=.+.+....|
T Consensus 414 ~~l~E~kr~i~---DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 488 (562)
T 3p9d_E 414 MIVDEAERALH---DSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSG 488 (562)
T ss_dssp TTHHHHTHHHH---HHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666666654 55555555555 7899999999998888876543 34666666655555555433
No 113
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=24.85 E-value=1.7e+02 Score=31.10 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||.+ +=+.+|-...+ .|+|.|++...++.+|+..++- ++.+.+|+..=.+.+....|
T Consensus 393 ~~l~E~kr~l~---DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG 467 (559)
T 3p9d_A 393 YSLDEMERSLH---DSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAA 467 (559)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45667776654 55556666665 7899999999998888876542 44666776666665555443
No 114
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=23.86 E-value=1.6e+02 Score=30.83 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---ccccCCchhhcHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhhcC
Q 012071 305 SMLEEVDRGYKQYYHQMQIVASSFD---MVAGHGAAKSYTVLALQTISRH--------FRSLRDAISDQIQVTGRSLG 371 (471)
Q Consensus 305 ~mLdEVdrRY~qY~~qmq~v~ssF~---~vag~g~a~~yt~lal~~~srh--------fr~lrd~I~~qi~~~~~~~g 371 (471)
.+|+|++||. +|-+..|-...+ .|+|.|++..+++.+|+..++. ++.+.+|++.-=+.+....|
T Consensus 374 ~~l~E~kr~l---~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG 448 (517)
T 3iyg_Z 374 HTLTQIKDAI---RDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSG 448 (517)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4677777665 456666666665 7899999999888888876553 33455555533334444333
No 115
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.31 E-value=24 Score=25.63 Aligned_cols=47 Identities=13% Similarity=-0.074 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCchhhcccccc-cchhhh
Q 012071 413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVRKIEIL-LLELWI 467 (471)
Q Consensus 413 Rglpk~a~~iLr~Wl~eH~~~PYPs~~eK~~LA~~TGLs~sQVsNWFiN-RrRl~K 467 (471)
..||+....+|...+.+. + .-..+|...|++...|.+|... |+++.+
T Consensus 14 ~~L~~~~r~il~l~~~~g----~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG----L----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 358999999998765543 2 2357899999999999999988 777655
No 116
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.67 E-value=1.3e+02 Score=24.17 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcHHHHHHHHHHh---hh---HHHHHHHHHHHH
Q 012071 292 ERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRH---FR---SLRDAISDQIQV 365 (471)
Q Consensus 292 er~elq~kk~KLl~mLdEVdrRY~qY~~qmq~v~ssF~~vag~g~a~~yt~lal~~~srh---fr---~lrd~I~~qi~~ 365 (471)
|-+.++..|+.|-.-|.|++.||..=..+++..++..+..-. . +-.-|.++ |. ..|-+....|.+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~----~-----~r~e~~~q~~EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQ----N-----MKEEMARHLREYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345678899999999999999999999999999988874311 1 11224433 44 344456666665
Q ss_pred Hhhhc
Q 012071 366 TGRSL 370 (471)
Q Consensus 366 ~~~~~ 370 (471)
-++-|
T Consensus 73 YRkLL 77 (84)
T 1gk4_A 73 YRKLL 77 (84)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56555
Done!