BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012073
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 543 bits (1400), Expect = e-155, Method: Compositional matrix adjust.
Identities = 250/411 (60%), Positives = 318/411 (77%), Gaps = 1/411 (0%)
Query: 52 QERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKL 111
Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDPDEGIRFRG SIPECQK+
Sbjct: 18 QARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKM 77
Query: 112 LPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHP 171
LP AK TG++P++EQV LSKE RA +P +V +D P HP
Sbjct: 78 LPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP 137
Query: 172 MTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG 231
M+Q ++ + AL +S F AY +GIH++KYWE YED ++LIA++P VAA +Y+ +Y++G
Sbjct: 138 MSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREG 197
Query: 232 KIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEGGNVSAHT HLV SALSD
Sbjct: 198 SSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+L+DY+W TLNSG+VVPG
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPG 317
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + GK KNPWPNVDAH
Sbjct: 318 YGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAH 377
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 461
SGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ D
Sbjct: 378 SGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD 428
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 543 bits (1399), Expect = e-155, Method: Compositional matrix adjust.
Identities = 250/411 (60%), Positives = 318/411 (77%), Gaps = 1/411 (0%)
Query: 52 QERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKL 111
Q R+K + + G +G ITVDM+ GGMRGM GL++ETS+LDPDEGIRFRG SIPECQK+
Sbjct: 18 QARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKM 77
Query: 112 LPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHP 171
LP AK TG++P++EQV LSKE RA +P +V +D P HP
Sbjct: 78 LPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP 137
Query: 172 MTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG 231
M+Q ++ + AL +S F AY +GIH++KYWE YED ++LIA++P VAA +Y+ +Y++G
Sbjct: 138 MSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREG 197
Query: 232 KIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEGGNVSAHT HLV SALSD
Sbjct: 198 SSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAA+NGLAGPLHGLANQEVL+W+ + E G++V+ E+L+DY+W TLNSG+VVPG
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPG 317
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + GK KNPWPNVDAH
Sbjct: 318 YGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAH 377
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 461
SGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ D
Sbjct: 378 SGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD 428
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/415 (60%), Positives = 316/415 (76%), Gaps = 1/415 (0%)
Query: 52 QERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKL 111
Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDPDEGIRFRG SIPECQKL
Sbjct: 18 QARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKL 77
Query: 112 LPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHP 171
LP A TG++P+ EQV +SKE RA +P +V +D P HP
Sbjct: 78 LPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHP 137
Query: 172 MTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG 231
M+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA++P VAA +Y+ +Y+ G
Sbjct: 138 MSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAG 197
Query: 232 KIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVSAHT HLV SALSD
Sbjct: 198 SSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+L+DY+W TLNSG+VVPG
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPG 317
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + GK KNPWPNVDAH
Sbjct: 318 YGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAH 377
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 465
SGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ +EK
Sbjct: 378 SGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTAGLEK 432
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/415 (60%), Positives = 316/415 (76%), Gaps = 1/415 (0%)
Query: 52 QERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKL 111
Q R+K + + G +G ITVDM GGMRGM GL++ETS+LDPDEGIRFRG SIPECQKL
Sbjct: 16 QARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKL 75
Query: 112 LPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHP 171
LP A TG++P+ EQV +SKE RA +P +V +D P HP
Sbjct: 76 LPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHP 135
Query: 172 MTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG 231
M+Q ++ + AL +S F AY +GI+++KYWE YED+++LIA++P VAA +Y+ +Y+ G
Sbjct: 136 MSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAG 195
Query: 232 KIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
I DS LD+ NF++MLG+ DP+ ELMRLY+TIHSDHEGGNVSAHT HLV SALSD
Sbjct: 196 SSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 255
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAA+NGLAGPLHGLANQEVLLW+ + + G + + E+L+DY+W TLNSG+VVPG
Sbjct: 256 PYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPG 315
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + GK KNPWPNVDAH
Sbjct: 316 YGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAH 375
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEK 465
SGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ +EK
Sbjct: 376 SGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTAGLEK 430
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/411 (58%), Positives = 300/411 (72%), Gaps = 1/411 (0%)
Query: 52 QERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKL 111
Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDPDEGIRFRG SIPECQKL
Sbjct: 18 QARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKL 77
Query: 112 LPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHP 171
LP TG++P+ QV LSKE RA +P +V +D P HP
Sbjct: 78 LPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP 137
Query: 172 MTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG 231
M+Q ++ + AL +S F AY +GI ++KYWE YE +++LIA++P VAA +Y+ +Y+ G
Sbjct: 138 MSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAG 197
Query: 232 KIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEGGNVSAHT HLV SALSD
Sbjct: 198 SSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAA+NGLAGPLHGLANQEVL W+ + L+DY+W TLNSG+VVPG
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADASLRDYIWNTLNSGRVVPG 317
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + G NPWPNVDAH
Sbjct: 318 YGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANPWPNVDAH 377
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 461
SGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ D
Sbjct: 378 SGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD 428
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 242/411 (58%), Positives = 303/411 (73%), Gaps = 5/411 (1%)
Query: 52 QERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKL 111
Q R+K + + G LG ITVDM GGMRGM GL++ETS+LDPDEGIRFRG SIPECQKL
Sbjct: 18 QARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKL 77
Query: 112 LPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHP 171
LP TG++P+ QV LSKE RA +P +V +D P HP
Sbjct: 78 LPKGG-GGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHP 136
Query: 172 MTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG 231
M+Q ++ + AL +S F AY +GI ++KYWE YE +++LIA++P VAA +Y+ +Y+ G
Sbjct: 137 MSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAG 196
Query: 232 KIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSD 290
I DS LD+ NF++MLG+ D + ELMRLY+TIHSDHEGGNVSAHT HLV SALSD
Sbjct: 197 SSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 256
Query: 291 PYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPG 350
PYLSFAAA+NGLAGPLHGLANQEVL W+ + G + + L+DY+W TLNSG+VVPG
Sbjct: 257 PYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADAS---LRDYIWNTLNSGRVVPG 313
Query: 351 FGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAH 410
+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + G NPWPNVDAH
Sbjct: 314 YGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANPWPNVDAH 373
Query: 411 SGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLD 461
SGVLL ++G+ E YYTVLFGVSR+LG+ +QLIW RALG PLERPKS++ D
Sbjct: 374 SGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD 424
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 165/350 (47%), Gaps = 40/350 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G++P+ EQV +E+ ++ V ++V AI A+P HPM+ +GV L +
Sbjct: 101 GELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEH------ 154
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
IH + E E + N++A++ +AA Y+ + + PK + Y NF +M+
Sbjct: 155 ---IHNGQK-ESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKME-YGYAENFLYMMFA 209
Query: 253 DD----PKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 306
DD P L + M +H+DHE N S T L S + PY + A + L GP
Sbjct: 210 DDESYKPDELHIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGITALWGPA 268
Query: 307 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYT 364
HG AN+ VL ++ E G +TE + Y+ K + + GFGH V + TDPR T
Sbjct: 269 HGGANEAVL----KMLSEIG---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRAT 321
Query: 365 -----CQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFG 419
C+ A D+PL + KL E+ + + + + NVD +SG++L G
Sbjct: 322 AMKKNCEEILAKLGHSDNPLLTVAKKLEEIA--LQDEFFIERKLFSNVDFYSGIILKAMG 379
Query: 420 LAEARYYTVLFGVSRSLGICSQLIWDRALGLPLE---RPKSVTLDWIEKN 466
+ E +T +F ++R+ G SQ W + P + RP+ + +N
Sbjct: 380 IPE-DMFTAIFALARTSGWISQ--WIEMVNDPAQKIGRPRQLYTGATNRN 426
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 35/319 (10%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P++E+++ ++LR+ +PD++ K + + A PM + V L
Sbjct: 53 GKLPNREELNWFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLL---------- 102
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
GI SK E T + LI++ P + A Y R+ K II D L + NF +ML
Sbjct: 103 --GIEDSKNDERTDIKGIKLISKFPTIVA-NYARLRKGLDIIEPDPKLSHSENFLYMLYG 159
Query: 253 DDPKMLELMRLYVTI--HSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
D P ++ + VT+ H DHE N S +VAS SD Y S A ++ L GPLHG A
Sbjct: 160 DRPNEIKSKAMDVTLILHIDHEM-NASTFASLVVASTFSDLYSSIVAGISALKGPLHGGA 218
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
N E L K E G + E++ DY+ L++ + + GFGH V + DPR +++A
Sbjct: 219 NYEALKMFK----EIG---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYA 271
Query: 371 LKHLPDD------PLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 424
K L + L+Q+ K+ E+ + LG K +PNVD S ++ G E
Sbjct: 272 -KLLAEKEGGEIYTLYQIAEKVEEIG---IKYLGP-KGIYPNVDFFSSIVFYSLGF-EPD 325
Query: 425 YYTVLFGVSRSLGICSQLI 443
++ +F +R +G + ++
Sbjct: 326 FFPAVFASARVVGWVAHIM 344
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 155/337 (45%), Gaps = 35/337 (10%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
G++P+K Q D + L + + + + + AHPM V AL + + +A
Sbjct: 99 NGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALS--AFYPDA 156
Query: 192 YEKGIHKSKYWEPTYED--SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHM 249
+ I P D ++ LIA++P +AA+ Y+ + I P++D L+Y NF M
Sbjct: 157 NDIAI-------PANRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRND-LNYAENFLSM 208
Query: 250 LGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGL 302
+ +P + M + +H+DHE N S T L S ++P+ AA + L
Sbjct: 209 MFARMSEPYKVNPVLARAMNRILILHADHEQ-NASTSTVRLAGSTGANPFACIAAGIAAL 267
Query: 303 AGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPR 362
GP HG AN+ VL + + + Q+KD NSG + GFGH V + DPR
Sbjct: 268 WGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDK-----NSGVKLMGFGHRVYKNFDPR 322
Query: 363 -----YTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNH 417
TC + DDPL L +L ++ + + +PNVD +SG++L
Sbjct: 323 AKIMQQTCHEVLTELGIKDDPLLDLAVELEKIA--LSDDYFVQRKLYPNVDFYSGIILKA 380
Query: 418 FGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLER 454
G+ + +TVLF V+R+ G SQ W + P +R
Sbjct: 381 MGIPTS-MFTVLFAVARTTGWVSQ--WKEMIEEPGQR 414
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 163/334 (48%), Gaps = 39/334 (11%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ--E 190
G++P +++++ S L R +P ++ ++ PV+AHPM+ + V SEF +
Sbjct: 53 GRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAV------SEFGMLD 106
Query: 191 AYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML 250
E I + E YE L+LIA+ + A +R+ + + IP + L + NF +M
Sbjct: 107 PTEGDISR----EALYEKGLDLIAKFATIVA-ANKRLKEGKEPIPPREDLSHAANFLYMA 161
Query: 251 -GFD-DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 308
G + P+ LM + +H++H G N S T S +D Y + AA+ L GP HG
Sbjct: 162 NGVEPSPEQARLMDAALILHAEH-GFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHG 220
Query: 309 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRY----T 364
AN+ V+ I+ E G T E+ +++V + L + + G GH V + DPR
Sbjct: 221 GANEAVMRMIQ----EIG---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEK 273
Query: 365 CQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNP---WPNVDAHSGVLLNHFGLA 421
R A KH SK ++++ + + GKV NP +PNVD +SGV+ + G +
Sbjct: 274 LARLVAEKHGH--------SKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFS 325
Query: 422 EARYYTVLFGVSRSLGICSQLIWDRALGLPLERP 455
++T +F V+R G ++ + L L RP
Sbjct: 326 -LEFFTPIFAVARISGWVGHILEYQELDNRLLRP 358
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 38/316 (12%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P+K +++ +++ D +P + LP H + V+ + +
Sbjct: 52 GKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYID-----VLKIFL-------- 98
Query: 193 EKGIHKSKYW--EPTYEDSLNLIARVPVVAAYVYQRIYKDGK--IIPKDDSLDYGGNFSH 248
IH S E E ++ + + P + AY Y+ Y GK I P+ D L + NF +
Sbjct: 99 --SIHGSMDGNDEDLREKAIRVASVFPTILAYYYR--YSKGKELIRPRKD-LSHVENFYY 153
Query: 249 ML-GFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 307
M+ G + K+ L ++ + + N S ++AS LSD Y AL L GPLH
Sbjct: 154 MMFGERNEKIRLLESAFILLM--EQDINASTFAALVIASTLSDLYSCIVGALGALKGPLH 211
Query: 308 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 367
G A+++V +++E G + ++++++V K L + + GFGH V + DPR +
Sbjct: 212 GGASEKV----PPMLEEIG---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLK 264
Query: 368 EFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYT 427
+H PD LF++ SKL E + K+KN +PNVD +S VL G +T
Sbjct: 265 RVLQEHFPDSKLFRIASKLEEYIVS-----NKIKNIYPNVDLYSSVLFEELGFPR-NMFT 318
Query: 428 VLFGVSRSLGICSQLI 443
LF +R +G + +I
Sbjct: 319 ALFATARVVGWTAHVI 334
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 173/382 (45%), Gaps = 45/382 (11%)
Query: 76 IGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKV 135
I + G G+LW +RG I E +L G++
Sbjct: 36 ISDIDGEKGILW------------YRGYRIEELARL---------STYEEVSYLILYGRL 74
Query: 136 PSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSE----FQEA 191
P+K +++ ++ + + I L AHPM + V A E EA
Sbjct: 75 PTKRELEDYINRMKKYRELHPATVEVIRNL-AKAHPMFALEAAVAAEGAYDEDNQKLIEA 133
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
G +K++ E Y + L+A++P + AY Y R + +++ D L + NF +M+
Sbjct: 134 LSVGRYKAEEKELAYRIAEKLVAKMPTIVAYHY-RFSRGLEVVRPRDDLGHAANFLYMMF 192
Query: 252 FDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 309
+P L + LY+ +H+DHE S H+VAS LSD Y S AAA+ L GPLHG
Sbjct: 193 GREPDPLASRGIDLYLILHADHEV-PASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGG 251
Query: 310 ANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREF 369
AN+ + +++ + E G +++ + K G + G GH V + DPR +EF
Sbjct: 252 ANE---MAVRNYL-EIGTPAKAKEIVEAATKP--GGPKLMGVGHRVYKAYDPRAKIFKEF 305
Query: 370 ALKHLPD--DP--LFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARY 425
+ ++ DP LF + S + + V + + + +PNVD SG+ + G+ Y
Sbjct: 306 SRDYVAKFGDPQNLFAIASAIEQEV--LSHPYFQQRKLYPNVDFWSGIAFYYMGIP-YEY 362
Query: 426 YTVLFGVSRSLGICSQLI--WD 445
+T +F +SR +G + ++ W+
Sbjct: 363 FTPIFAMSRVVGWVAHVLEYWE 384
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/437 (23%), Positives = 192/437 (43%), Gaps = 56/437 (12%)
Query: 58 VKSELGKAQLGNITVDMVIGGMRGM----------TGLLWETSLLDPDEGIRF-RGLSIP 106
V+ ++ K LG +D+ G +G+ T + + +D DEGI RG I
Sbjct: 15 VELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTTSCESKITFIDGDEGILLHRGFPID 74
Query: 107 ECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALP 166
+ G+ P++EQ D + + + + + A
Sbjct: 75 QLA---------TDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFR 125
Query: 167 VTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 226
+HPM AL + + ++ + ++ ++ E + L++++P +AA Y+
Sbjct: 126 RDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKY 178
Query: 227 IYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAH 279
+ P++D L Y GNF +M+ +P + M + +H+DHE N S
Sbjct: 179 SIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTS 236
Query: 280 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW 339
T S+ ++P+ AA + L GP HG AN+ L +++E G+ E + ++V
Sbjct: 237 TVRTAGSSGANPFACIAAGIASLWGPAHGGANEAAL----KMLEEIGKK---ENIPEFVR 289
Query: 340 --KTLNSGKVVPGFGHGVLRKTDPRYTCQREFA---LKHL-PDDPLFQLVSKLFEVV--P 391
K N + GFGH V + DPR T RE LK L D L ++ +L +
Sbjct: 290 RAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALND 349
Query: 392 PILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLP 451
P + K +PNVD +SG++L G+ + +TV+F ++R++G + + G+
Sbjct: 350 PYFIE----KKLYPNVDFYSGIILKAMGIPSS-MFTVIFAMARTVGWIAHWSEMHSDGMK 404
Query: 452 LERPKSVTLDWIEKNCK 468
+ RP+ + + +++ K
Sbjct: 405 IARPRQLYTGYEKRDFK 421
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 150/313 (47%), Gaps = 26/313 (8%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+PS +++ KEL +P V + ++ALP HPM + + L ++
Sbjct: 51 GKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYL---GNIDDSG 107
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-G 251
+ + E Y +++ A++P + A Y RI + +P + L + NF +ML G
Sbjct: 108 DIPVTP----EEVYRIGISVTAKIPTIVANWY-RIKNGLEYVPPKEKLSHAANFLYMLHG 162
Query: 252 FDDPKMLE-LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
+ PK E M + + ++++HE N S V S LSD Y + A + L GP+HG A
Sbjct: 163 EEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGA 221
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
+E + + E + E+++++ +K L + + G GH V + DPR +++A
Sbjct: 222 VEE-------AIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYA 274
Query: 371 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTVL 429
K L D LF++ +L +V L+K G NVD SG++ +G+ YT +
Sbjct: 275 SK-LGDKKLFEIAERLERLVEEYLSKKGIS----INVDYWSGLVF--YGMKIPIELYTTI 327
Query: 430 FGVSRSLGICSQL 442
F + R G + L
Sbjct: 328 FAMGRIAGWTAHL 340
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 142/335 (42%), Gaps = 34/335 (10%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G+ P++EQ + + V + + AHP V AL
Sbjct: 96 GEAPTREQYEKFKTTVTRHTXVHEQIASFFHGFRRDAHPXAVXCGVVGALAAFYHDSLDI 155
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
+H+ + L+++ P +AA Y+ I P++D L Y NF H
Sbjct: 156 NNDLHREI-------TAYRLLSKXPTLAAXCYKYSTGQPFIYPRND-LSYAENFLHXXFA 207
Query: 253 D-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGP 305
+P + T+H+DHE N S T L S+ ++P+ AA + L GP
Sbjct: 208 TPCEEYEVNPVVARAXDKIFTLHADHEQ-NASTSTVRLAGSSGANPFACIAAGIASLWGP 266
Query: 306 LHGLANQEVLLWIKSV--VDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRY 363
HG AN+ L ++ + VD E V + KD ++ + GFGH V + DPR
Sbjct: 267 AHGGANEACLKXLEEIGSVDNIPEYVDRAKDKDDPFR-------LXGFGHRVYKNYDPRA 319
Query: 364 TCQREFA---LKHLP-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFG 419
T RE LK L DPL + +L + + + K +PNVD +SG++L G
Sbjct: 320 TVXRETCHEVLKELNIQDPLLDVAXELERIA--LSDEYFVSKKLYPNVDFYSGIILKAIG 377
Query: 420 LAEARYYTVLFGVSRSLGICSQLIWDRALGLPLER 454
+ +TV+F +SR++G + W+ PL R
Sbjct: 378 IP-VSXFTVIFAISRTIGWIAH--WNEXHSDPLNR 409
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 36/352 (10%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 91 NGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 148
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 149 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 202
Query: 252 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 203 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 261
Query: 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW--KTLNSGKVVPGFGHGVLRKTDPR 362
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 262 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 314
Query: 363 YTCQREFA---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLN 416
T RE LK L D L ++ +L + P + K +PNVD +SG++L
Sbjct: 315 ATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILK 370
Query: 417 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 468
G+ + +TV+F ++R++G + + G+ + RP+ + + +++ K
Sbjct: 371 AMGIPSS-MFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 421
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 36/352 (10%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 92 NGEKPTQEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 149
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 150 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 203
Query: 252 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 204 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 262
Query: 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 362
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 263 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 315
Query: 363 YTCQREFA---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLN 416
T RE LK L D L ++ +L + P + K +PNVD +SG++L
Sbjct: 316 ATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILK 371
Query: 417 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 468
G+ + +TV+F ++R++G + + G+ + RP+ + + +++ K
Sbjct: 372 AMGIPSS-MFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 422
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 31/318 (9%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P+K++++ L +L + VP V I +P A + G AL
Sbjct: 54 GKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALA--------- 104
Query: 193 EKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
I K+ W E E ++++IA++ + A VY+R + IP + S + +F
Sbjct: 105 --SIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIP-EPSDSFAKSFLLASF 161
Query: 252 FDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 309
+P E+ M + +++DHE S + AS LSD Y S AAL L GPLHG
Sbjct: 162 AREPTTDEINAMDKALILYTDHEVP-ASTTAALVAASTLSDMYSSLTAALAALKGPLHGG 220
Query: 310 ANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREF 369
A +E K ++ N D K +N + GFGH V + DPR ++
Sbjct: 221 AAEEAF---KQFIEIGDPNRVQNWFND---KVVNQKNRLMGFGHRVYKTYDPRAKIFKKL 274
Query: 370 ALKHLPDDP----LFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARY 425
AL + + F++ KL E + K K +PN D +SG++ G
Sbjct: 275 ALTLIERNADARRYFEIAQKLEE----LGIKQFSSKGIYPNTDFYSGIVFYALGFP-VYM 329
Query: 426 YTVLFGVSRSLGICSQLI 443
+T LF +SR+LG + +I
Sbjct: 330 FTALFALSRTLGWLAHII 347
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 149/320 (46%), Gaps = 31/320 (9%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+P++++++ +L+ +P V ++ALP +HPM +GV AL +E +
Sbjct: 83 GKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGH 142
Query: 193 EKGIHKSKYWEPTYEDSLNLIAR----VPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSH 248
T + ++ + + + Y Y + +I P+ D GG+F H
Sbjct: 143 ------------TVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLH 190
Query: 249 MLGFDDPKML--ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 306
+L + P + M + + ++++HE N S T ++A SD Y + A+ L GP
Sbjct: 191 LLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAIIGAIGALRGPK 249
Query: 307 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQ 366
HG AN EV L I+ + T ++ + + K + + +VV GFGH V DPR+
Sbjct: 250 HGGAN-EVSLEIQQRYE------TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVI 302
Query: 367 REFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYY 426
+ A K L ++ K++ + + T + + K +PN+D S V N G+ +
Sbjct: 303 KRVA-KQLSEE---GGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNMMGVP-TEMF 357
Query: 427 TVLFGVSRSLGICSQLIWDR 446
T LF ++R G + +I R
Sbjct: 358 TPLFVIARVTGWAAHIIEQR 377
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 161/352 (45%), Gaps = 36/352 (10%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
G+ P++EQ D + + + + + A +HPM AL + + ++
Sbjct: 92 NGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDS 149
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
+ ++ ++ E + L++++P +AA Y+ + P++D L Y GNF +M+
Sbjct: 150 LD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMF 203
Query: 252 FD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304
+P + M + +H+DHE N S T S+ ++P+ AA + L G
Sbjct: 204 STPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWG 262
Query: 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGKVVPGFGHGVLRKTDPR 362
P HG AN+ L ++ + + + + ++ K N + GFGH V + DPR
Sbjct: 263 PAHGGANEAALKMLEEI-------SSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPR 315
Query: 363 YTCQREFA---LKHL-PDDPLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLN 416
T RE LK L D L ++ +L + P + K +PNVD +SG++L
Sbjct: 316 ATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILK 371
Query: 417 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCK 468
G+ + +TV+ ++R++G + + G+ + RP+ + + +++ K
Sbjct: 372 AMGIPSS-MFTVIAAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFK 422
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 26/316 (8%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
K+P+K ++D +K+L + ++P + ++ +P ++HP +G L E + +
Sbjct: 57 NKLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPXDVXRTGCSXLG-NLEPENGF 115
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
E E D L+A P + Y Y + +I + D L G F H+L
Sbjct: 116 EN--------EQNIAD--RLVAIFPAIQCYWYHYSHHGKRIDTELDDLTLAGYFLHLLLG 165
Query: 253 DDPKM--LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
++ + ++++HE N S + ++ LSD Y + AA+ L GPLHG A
Sbjct: 166 KKAAQXAIDCXNASLILYAEHEF-NASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGA 224
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
N+ + D T + + + L + +++ GFGH V R+ DPR + +A
Sbjct: 225 NE-------AAXDLIXLYKTPSEAIAGIKRKLANKELIXGFGHAVYRERDPRNAIIKSWA 277
Query: 371 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLF 430
K P+ LF++ I K +PN+D +S HF + +T +F
Sbjct: 278 QKLAPN----AADGYLFDISDAIENTXQDEKKLFPNLDFYSATAY-HFLNIPTKLFTPIF 332
Query: 431 GVSRSLGICSQLIWDR 446
SR G C+ + R
Sbjct: 333 VXSRVTGWCAHIFEQR 348
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase
Length = 378
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 28/331 (8%)
Query: 132 TGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEA 191
++P+ ++ R + + V AID L HPM + V L
Sbjct: 54 NSELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGAN------ 107
Query: 192 YEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG 251
+ + S E E +++L+A P V AY +R + I P++D LDY NF M
Sbjct: 108 HARAQDSSP--EANLEKAMSLLATFPSVVAYDQRRRRGEELIEPRED-LDYSANFLWMTF 164
Query: 252 FDD--PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGL 309
++ P+++E + + ++++H N S T ++ S L+D + + A+ L GPLHG
Sbjct: 165 GEEAAPEVVEAFNVSMILYAEH-SFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGG 223
Query: 310 ANQEVLLWIKSVVDECGENVTTEQLKDYVW--KTLNSGKVVPGFGHGVLRKTDPRYTCQR 367
AN+ V+ + + E++ + W L K V GFGH V + D R +
Sbjct: 224 ANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMK 283
Query: 368 ---EFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR 424
+ +KH + L + L + + K PN+D +G N G +
Sbjct: 284 SALDAMIKHYDRPEMLGLYNGL-------EAAMEEAKQIKPNLDYPAGPTYNLMGF-DTE 335
Query: 425 YYTVLFGVSRSLGICSQL---IWDRALGLPL 452
+T LF +R G + + + D AL PL
Sbjct: 336 MFTPLFIAARITGWTAHIMEQVADNALIRPL 366
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 29/315 (9%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
GK+PS E++ +L +P+++ + I +LP M+ + V AL
Sbjct: 51 GKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALG--------- 101
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYG--GNFSHML 250
+ + P E+++ LIA P + AY + + I P S YG N+ +ML
Sbjct: 102 ----ENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAP---SSQYGHVENYYYML 154
Query: 251 GFDDPKMLE--LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHG 308
+ P + + Y+ + ++H G N S + + S SD + AAL + GPLHG
Sbjct: 155 TGEQPSEAKKKALETYMILATEH-GMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHG 213
Query: 309 LANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQRE 368
A V ++++ GE E + Y+ + L G+ + GFGH V + DPR R+
Sbjct: 214 GAPSAV----TKMLEDIGEK---EHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQ 266
Query: 369 FALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTV 428
A + +D L + +L + + NV+ ++ ++ + +T
Sbjct: 267 KAEEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDF-DDELFTP 325
Query: 429 LFGVSRSLGICSQLI 443
F SR +G C+ ++
Sbjct: 326 TFSASRMVGWCAHVL 340
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 159/344 (46%), Gaps = 49/344 (14%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALP--VTAHPMTQFASGVMALQVQSEFQE 190
G++P+++Q++ + + + VP+ V I ++P A M + A G++A ++
Sbjct: 55 GELPNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNR 114
Query: 191 AYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK--DDSLDYGGNFSH 248
A K E ++ +IA+ + A +Y+ K+G + PK + S Y +F
Sbjct: 115 ATNK------------ELAVQIIAKTATITANIYRA--KEG-LKPKIPEPSESYAESFLA 159
Query: 249 MLGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASA-LSDPYLSFAAALNGLAGP 305
P E+ M + +++DHE ++ T LVAS+ LSD Y AAL L GP
Sbjct: 160 ATFGKKPTQEEIKAMDASLILYTDHEVP--ASTTAALVASSTLSDMYSCIVAALAALKGP 217
Query: 306 LHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKV-VPGFGHGVLRKTDPRY- 363
LHG A +E K V E G + E + + + GK + GFGH V + DPR
Sbjct: 218 LHGGAAEEAF---KQFV-EIG---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAK 270
Query: 364 ---TCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLG----KVKNPWPNVDAHSGVLLN 416
T + FA K+ + V K +E+ I KLG K+ +PN D +SG++
Sbjct: 271 IFKTLAKSFAEKN-------ENVKKYYEIAERI-EKLGVDTFGSKHIYPNTDFYSGIVFY 322
Query: 417 HFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTL 460
G +T LF +SR LG + +I L RP+++ +
Sbjct: 323 ALGFP-IYMFTSLFALSRVLGWLAHIIEYVEEQHRLIRPRALYI 365
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 134/329 (40%), Gaps = 20/329 (6%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G +P+++++ + ++ +PD+V AI LP + +A SE + +
Sbjct: 58 GNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESD-AVAMQMAAVAAMAASETKFKW 116
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNF-SHMLG 251
K + + + +I R+ + VY+ I +PK S Y +F + G
Sbjct: 117 NKDTDR--------DVAAEMIGRMSAITVNVYRHIMNMPAELPKP-SDSYAESFLNAAFG 167
Query: 252 FDDPKM-LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
K ++ M + +++DHE S G + S LSD Y AAL L GPLHG A
Sbjct: 168 RKATKEEIDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGA 226
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
+ + + D + + D + +N K + GFGH V + DPR + A
Sbjct: 227 AEAAIAQFDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGIA 280
Query: 371 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTVL 429
K P V ++ + K K +PN D SG++ G YT L
Sbjct: 281 EKLSSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTAL 340
Query: 430 FGVSRSLGICSQLIWDRALGLPLERPKSV 458
F +SR G + I L RP++V
Sbjct: 341 FALSRVTGWQAHFIEYVEEQQRLIRPRAV 369
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 134/329 (40%), Gaps = 20/329 (6%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G +P+++++ + ++ +PD+V AI LP + +A SE + +
Sbjct: 57 GNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESD-AVAMQMAAVAAMAASETKFKW 115
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNF-SHMLG 251
K + + + +I R+ + VY+ I +PK S Y +F + G
Sbjct: 116 NKDTDR--------DVAAEMIGRMSAITVNVYRHIMNMPAELPKP-SDSYAESFLNAAFG 166
Query: 252 FDDPKM-LELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
K ++ M + +++DHE S G + S LSD Y AAL L GPLHG A
Sbjct: 167 RKATKEEIDAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGA 225
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
+ + + D + + D + +N K + GFGH V + DPR + A
Sbjct: 226 AEAAIAQFDEIKDPA---MVEKWFNDNI---INGKKRLMGFGHRVYKTYDPRAKIFKGIA 279
Query: 371 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYYTVL 429
K P V ++ + K K +PN D SG++ G YT L
Sbjct: 280 EKLSSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTAL 339
Query: 430 FGVSRSLGICSQLIWDRALGLPLERPKSV 458
F +SR G + I L RP++V
Sbjct: 340 FALSRVTGWQAHFIEYVEEQQRLIRPRAV 368
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 139/330 (42%), Gaps = 31/330 (9%)
Query: 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAY 192
G++P+ ++ S+ R V + + LP HPM + + L + ++
Sbjct: 99 GELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDED-- 156
Query: 193 EKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF 252
+ +++K ++ ++A +P + A +R I P L Y NF HM
Sbjct: 157 DAAANRAK--------AMRMMAVLPTIVAIDMRRRRGLPPIAPHS-GLGYAQNFLHMCFG 207
Query: 253 DDPK--MLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310
+ P+ ++ + ++++H G N S +V S SD Y + A+ L G LHG A
Sbjct: 208 EVPETAVVSAFEQSMILYAEH-GFNASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGA 266
Query: 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFA 370
N+ V+ + + D ++++ L + + GFGH V R D R + A
Sbjct: 267 NEAVMHDMIEIGDPA-------NAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKR-A 318
Query: 371 LKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSG--VLLNHFGLAEARYYTV 428
L+ + Q +++V + ++ PN+D +G L F +A +T
Sbjct: 319 LERVGTVRDGQRWLDIYQV---LAAEMASATGILPNLDFPTGPAYYLMGFDIAS---FTP 372
Query: 429 LFGVSRSLGICSQLIWDRALGLPLERPKSV 458
+F +SR G + I ++A L RP S
Sbjct: 373 IFVMSRITGWTAH-IMEQATANALIRPLSA 401
>pdb|2GH9|A Chain A, Thermus Thermophilus Maltotriose Binding Protein Bound
With Maltotriose
Length = 386
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 370 ALKHLPDDPLFQLVSKLFEVVPPI--LTKLGKVKNPWPN 406
A+K L DP+ SK+F + P+ + ++GKV PW N
Sbjct: 312 AVKQLEKDPVVAGFSKVFPLGAPMPNIPEMGKVWGPWGN 350
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 302 LAGPLHGLANQEVLLWIKSVVDECG 326
L G LH + +E+L++IKS ECG
Sbjct: 59 LMGQLHRMNKEEILVFIKSCQHECG 83
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 302 LAGPLHGLANQEVLLWIKSVVDECG 326
L G LH + +E+L++IKS ECG
Sbjct: 58 LMGQLHRMNKEEILVFIKSCQHECG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,864,656
Number of Sequences: 62578
Number of extensions: 572367
Number of successful extensions: 1242
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 31
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)