Query 012073
Match_columns 471
No_of_seqs 264 out of 1541
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1csh_A Citrate synthase; lyase 100.0 1E-121 5E-126 961.3 46.4 432 38-469 2-434 (435)
2 3hwk_A Methylcitrate synthase; 100.0 1E-102 4E-107 811.4 36.7 373 54-463 25-406 (414)
3 3msu_A Citrate synthase; helix 100.0 1E-101 5E-106 805.8 35.5 363 67-463 46-423 (427)
4 2h12_A Citrate synthase; acido 100.0 3E-101 9E-106 807.3 36.6 382 46-463 22-426 (436)
5 2ibp_A Citrate synthase; disul 100.0 2E-101 8E-106 802.5 34.0 376 61-462 9-398 (409)
6 3l96_A Citrate synthase; quate 100.0 5E-102 2E-106 809.9 25.4 372 54-462 30-415 (426)
7 2p2w_A Citrate synthase; trans 100.0 7E-100 2E-104 782.8 36.1 351 74-462 1-352 (367)
8 3tqg_A 2-methylcitrate synthas 100.0 4E-100 1E-104 785.0 33.6 354 68-462 3-363 (375)
9 3o8j_A 2-methylcitrate synthas 100.0 5E-100 2E-104 789.8 34.3 365 63-462 18-392 (404)
10 2c6x_A Citrate synthase 1; tri 100.0 1.3E-99 5E-104 779.3 36.2 355 76-463 2-359 (363)
11 1o7x_A Citrate synthase; lyase 100.0 1.7E-98 6E-103 774.9 35.8 353 77-463 6-367 (377)
12 1iom_A Citrate synthase; open 100.0 5.4E-98 2E-102 771.2 38.8 355 77-462 5-365 (377)
13 1vgm_A 378AA long hypothetical 100.0 2.3E-98 8E-103 774.2 35.7 356 70-462 3-367 (378)
14 1aj8_A Citrate synthase; hyper 100.0 3.8E-98 1E-102 770.9 36.7 354 76-462 2-359 (371)
15 1a59_A Citrate synthase; cold- 100.0 4.9E-98 2E-102 772.6 37.0 359 75-462 5-372 (378)
16 2ifc_A Citrate synthase; oxalo 100.0 3.9E-98 1E-102 774.1 35.2 355 75-462 7-373 (385)
17 1vgp_A 373AA long hypothetical 100.0 5.4E-98 2E-102 770.7 34.3 352 75-462 3-362 (373)
18 3tqg_A 2-methylcitrate synthas 43.5 59 0.002 33.0 8.0 61 121-183 153-217 (375)
19 3u5c_P 40S ribosomal protein S 37.6 14 0.00047 32.7 1.9 23 98-130 15-37 (142)
20 3j20_T 30S ribosomal protein S 37.3 13 0.00045 32.4 1.7 22 98-129 6-27 (132)
21 1a59_A Citrate synthase; cold- 34.0 1E+02 0.0034 31.2 8.0 59 122-182 154-216 (378)
22 1aj8_A Citrate synthase; hyper 33.3 1.1E+02 0.0036 31.0 8.0 60 122-183 151-214 (371)
23 3o8j_A 2-methylcitrate synthas 33.2 1E+02 0.0035 31.6 7.9 61 121-183 182-246 (404)
24 4ay7_A Methylcobalamin\: coenz 33.1 43 0.0015 33.0 5.0 44 330-373 302-346 (348)
25 1iom_A Citrate synthase; open 32.8 1.1E+02 0.0037 31.0 8.0 60 122-183 152-215 (377)
26 2ifc_A Citrate synthase; oxalo 32.4 1.3E+02 0.0044 30.6 8.4 60 122-183 156-219 (385)
27 3hwk_A Methylcitrate synthase; 31.8 80 0.0027 32.5 6.8 61 121-183 195-259 (414)
28 2xzm_S RPS15E; ribosome, trans 31.7 18 0.0006 32.1 1.6 14 98-111 11-24 (144)
29 1vgp_A 373AA long hypothetical 31.3 1.2E+02 0.004 30.7 7.9 60 122-183 148-211 (373)
30 2ibp_A Citrate synthase; disul 31.3 1.2E+02 0.004 31.1 8.0 60 122-183 182-245 (409)
31 1vgm_A 378AA long hypothetical 30.2 1.5E+02 0.005 30.0 8.5 60 122-183 152-215 (378)
32 2qsr_A Transcription-repair co 24.3 64 0.0022 29.0 4.1 37 127-163 29-69 (173)
33 3iz6_R 40S ribosomal protein S 24.2 16 0.00055 32.6 0.0 14 98-111 24-37 (154)
34 2c6x_A Citrate synthase 1; tri 23.2 1.8E+02 0.0061 29.2 7.5 60 122-183 145-208 (363)
No 1
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=1.4e-121 Score=961.28 Aligned_cols=432 Identities=60% Similarity=1.056 Sum_probs=415.0
Q ss_pred cchhhHHHhhchhhHHHHHHHHHhhCCCcccceeecccccccccccccceecceecCCCCeeecCCCHHHHHhhCCCCCC
Q 012073 38 LFIYPSFFFSFLGHQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (471)
Q Consensus 38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~ 117 (471)
++|||+++++||.+++++|+||++||++++|++|+||+++||+|+++++|+||+||+++||+||||+|+||++++|++++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~ 81 (435)
T 1csh_A 2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG 81 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998878
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccC
Q 012073 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 197 (471)
Q Consensus 118 ~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~ 197 (471)
+.+++||||+||||+|+|||++|+++|+++|.+++.+|+++.++|++||+++|||++|+++|++|+++++|+++|+++.+
T Consensus 82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~ 161 (435)
T 1csh_A 82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN 161 (435)
T ss_dssp CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCC-cccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCC
Q 012073 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG-KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNV 276 (471)
Q Consensus 198 ~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~-~~~~~~~~l~~a~n~~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~ 276 (471)
+++||++.++++++|||++|+|+|++||++++++ .+++|++++||++||++||++|++.++++||++|||||||||+|+
T Consensus 162 ~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~ 241 (435)
T 1csh_A 162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV 241 (435)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCch
Confidence 6778999999999999999999999999998765 578999999999999999999999999999999999999976999
Q ss_pred chhHHHHHhhcCCChHHHHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 012073 277 SAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 356 (471)
Q Consensus 277 St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vy 356 (471)
||||+|+++||++|+|+|++||+++|+||+||||||+|++||.++.++||++.+++++++||++.+++|++|||||||||
T Consensus 242 STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVy 321 (435)
T 1csh_A 242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL 321 (435)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCcccc
Confidence 99999999999999999999999999999999999999999999988888766789999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhh
Q 012073 357 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 436 (471)
Q Consensus 357 r~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~ 436 (471)
|+.|||+++|+++++++.+++++++++.+||+++++++.++++.|++|||||||+|+++++||||+.++||++|++||++
T Consensus 322 k~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~ 401 (435)
T 1csh_A 322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRAL 401 (435)
T ss_dssp CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhH
Confidence 99999999999999999888999999999999999988888999999999999999999999995459999999999999
Q ss_pred HHHHHHHHHHHcCCCccCCCccchhHHHHHhhh
Q 012073 437 GICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 469 (471)
Q Consensus 437 GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~~~ 469 (471)
||+||++||+..+.||+||+|+||++++++|+.
T Consensus 402 Gw~AH~~Eq~~~~~~I~RP~~~y~~~~~~~~~~ 434 (435)
T 1csh_A 402 GVLAQLIWSRALGFPLERPKSMSTAGLEKLSAG 434 (435)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCcCcHHHhhHHHHHHhcC
Confidence 999999999999988999999999999999863
No 2
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-102 Score=811.40 Aligned_cols=373 Identities=21% Similarity=0.292 Sum_probs=329.9
Q ss_pred HHHHHHHhhCCCcccceeecc---cccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHH
Q 012073 54 RLKKVKSELGKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (471)
Q Consensus 54 ~~k~l~~~~g~~~~g~~tvd~---~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 129 (471)
.++.+|++||.+++++.|+|+ +.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~d~~~~~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~I~dLa~~~---------~fEevayL 95 (414)
T 3hwk_A 25 PLAAARSVAATKSMTAPTVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARC---------SFEQVAFL 95 (414)
T ss_dssp -----------------------CCCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHH
T ss_pred eHHHHHHhhCCcccCCccccCCCCCCCCCCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHH
Confidence 467889999999999999999 88999999999999999999999 699999999999986 59999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHH
Q 012073 130 LLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDS 209 (471)
Q Consensus 130 Ll~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a 209 (471)
||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++++.. . + |+..++++
T Consensus 96 Ll~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~vsaL~~~~~~~--------~-~-~~~~~~~a 165 (414)
T 3hwk_A 96 LWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDE--------D-D-AAANRAKA 165 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTCTTT--------T-C-GGGHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCCcc--------c-C-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764321 1 1 89999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhc
Q 012073 210 LNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASA 287 (471)
Q Consensus 210 ~~liA~~P~i~a~iyr~~~~~~~~~~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt 287 (471)
++|||++|+|+|++||++.+ ..+++|++++||++||++||++ +++.+.++||++|||||||| +|+||||+|+++||
T Consensus 166 ~rLiAk~pti~a~~yr~~~g-~~~~~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~NaST~taRvvaSt 243 (414)
T 3hwk_A 166 MRMMAVLPTIVAIDMRRRRG-LPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHG-FNASTFAARVVTST 243 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhc
Confidence 99999999999999998754 3578999999999999999976 78999999999999999999 89999999999999
Q ss_pred CCChHHHHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHH
Q 012073 288 LSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 367 (471)
Q Consensus 288 ~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~ 367 (471)
++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+
T Consensus 244 ~ad~ysavaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~L~ 316 (414)
T 3hwk_A 244 QSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEI----G---DPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMK 316 (414)
T ss_dssp TCCHHHHHHHHHHHHTSTTTTHHHHHHHHHHHHH----C---SGGGHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCccCChHHHHHHHHHHh----C---CchHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHH
Confidence 9999999999999999999999999999999887 5 46899999999999999999999999999999999999
Q ss_pred HHHHhh---CCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHH
Q 012073 368 EFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIW 444 (471)
Q Consensus 368 ~~a~~~---~~~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ie 444 (471)
++++++ .+++++++++.+||+++.+ .|+++||||||+|+++++||||. ++||+||++||++||+||++|
T Consensus 317 ~~a~~l~~~~g~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~E 388 (414)
T 3hwk_A 317 RALERVGTVRDGQRWLDIYQVLAAEMAS-------ATGILPNLDFPTGPAYYLMGFDI-ASFTPIFVMSRITGWTAHIME 388 (414)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------HHCCCBCTHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-------hcCCCCchHHHHHHHHHHhCCCH-HHHHHHHHHHhHHHHHHHHHH
Confidence 999864 5678999999999999854 27999999999999999999995 999999999999999999999
Q ss_pred HHHcCCCccCCCccchhHH
Q 012073 445 DRALGLPLERPKSVTLDWI 463 (471)
Q Consensus 445 q~~~~~pI~RP~s~~~~~~ 463 (471)
|+..+ +|+||++.|+|.-
T Consensus 389 q~~~~-riiRPr~~Y~G~~ 406 (414)
T 3hwk_A 389 QATAN-ALIRPLSAYCGHE 406 (414)
T ss_dssp HHHSC-CCCCCEEEECSCC
T ss_pred HHhcC-CCcCCCceeeCCC
Confidence 99887 7999999999864
No 3
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=1.4e-101 Score=805.77 Aligned_cols=363 Identities=28% Similarity=0.414 Sum_probs=330.0
Q ss_pred ccceeecccccccccccccceecceecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHH
Q 012073 67 LGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLS 145 (471)
Q Consensus 67 ~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~ 145 (471)
.|.+|+|+ ||.|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+
T Consensus 46 ~G~~t~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~G~LPt~~el~~f~ 113 (427)
T 3msu_A 46 HGIFTYDP---GFMSTAACESKITYIDGGKGVLLHRGYPIEEWTQKS---------NYRTLCYALIYGELPTDEQVKSFR 113 (427)
T ss_dssp GTEEEECT---TCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred CCCEeeCC---CcCCceEEEEEeeEEeCCCCEEEECCeEHHHHhccC---------CHHHHHHHHHcCcCCCHHHHHHHH
Confidence 47999998 999999999999999999995 99999999999985 599999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHH
Q 012073 146 KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQ 225 (471)
Q Consensus 146 ~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr 225 (471)
++|.+++.||+++.++|++||+++|||++|+++|++|++++ .+. ..|+..++++++||||+|+|+|++||
T Consensus 114 ~~l~~~~~lp~~~~~~i~~~p~~~hPM~~L~~~v~aL~~~~-------~~~---~~~~~~~~~a~rLiAk~pti~a~~yr 183 (427)
T 3msu_A 114 QEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEH-------IHN---GQKESQDEVAKNIVAKIATIAAMAYR 183 (427)
T ss_dssp HHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHH-------HHT---TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhc-------cCC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998642 122 34899999999999999999999999
Q ss_pred HHhcCCcccCCCCCCCHHHHHHHHhcC------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHH
Q 012073 226 RIYKDGKIIPKDDSLDYGGNFSHMLGF------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAAL 299 (471)
Q Consensus 226 ~~~~~~~~~~~~~~l~~a~n~~~ml~~------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl 299 (471)
+..|+ .+++|++++||++||++||++ ++|.++++||++|||||||| +|+||||+|+++||++|+|+|++||+
T Consensus 184 ~~~G~-~~~~p~~~ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvvaSt~ad~ysavaAgi 261 (427)
T 3msu_A 184 HNHGK-KFLEPKMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGI 261 (427)
T ss_dssp HHTTC-CCCCCCTTSCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHcCC-CCCCCCCccCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCC-CChhHHHHHHHHccCCCHHHHHHHHH
Confidence 88654 478899999999999999965 48899999999999999999 99999999999999999999999999
Q ss_pred hccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCccHHHHHHHHHhh----
Q 012073 300 NGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYTCQREFALKH---- 373 (471)
Q Consensus 300 ~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~--~ipGfGH~vyr~~DPRa~~l~~~a~~~---- 373 (471)
++|+||+||||||+|++||.+| + +++++++||++.+++|+ +||||||||||+.|||+++|+++|+++
T Consensus 262 ~aL~GPlHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~~i~GFGHrVYk~~DPRa~~Lk~~a~~l~~~~ 334 (427)
T 3msu_A 262 TALWGPAHGGANEAVLKMLSEI----G---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEILAKL 334 (427)
T ss_dssp HHHTSHHHHCHHHHHHHHHHHH----C---STTHHHHHHHHHHTC-----CCSBCCSSSSSCCHHHHHHHHHTHHHHHHG
T ss_pred HHccCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 9999999999999999999887 5 46799999999999999 999999999999999999999999875
Q ss_pred -CCCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcC-CC
Q 012073 374 -LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LP 451 (471)
Q Consensus 374 -~~~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~p 451 (471)
.+++++++++.+||+++.+ +++++.|++|||||||+|+++++||||. ++||++|++||++||+||++||+..+ .+
T Consensus 335 g~~~~~~~~la~~le~~a~~--d~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR~~Gw~AH~~Eq~~~p~~r 411 (427)
T 3msu_A 335 GHSDNPLLTVAKKLEEIALQ--DEFFIERKLFSNVDFYSGIILKAMGIPE-DMFTAIFALARTSGWISQWIEMVNDPAQK 411 (427)
T ss_dssp GGCSSHHHHHHHHHHHHHC--------CCCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHHhh--cccccccCCCCChHHHHHHHHHHcCCCc-cccceehhHHhHHHHHHHHHHHHhCCCCc
Confidence 2378999999999999976 6788999999999999999999999995 99999999999999999999999873 57
Q ss_pred ccCCCccchhHH
Q 012073 452 LERPKSVTLDWI 463 (471)
Q Consensus 452 I~RP~s~~~~~~ 463 (471)
|+||+|+|+|.-
T Consensus 412 I~RPr~~Y~G~~ 423 (427)
T 3msu_A 412 IGRPRQLYTGAT 423 (427)
T ss_dssp CCCCEEEECSCC
T ss_pred eeCCCceecCCC
Confidence 999999999853
No 4
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=100.00 E-value=2.7e-101 Score=807.35 Aligned_cols=382 Identities=26% Similarity=0.407 Sum_probs=345.1
Q ss_pred hhchhhHH-------HHHHHHHhhCCCcccceeecccccccccccccceecceecCCCCe-eecCCCHHHHHhhCCCCCC
Q 012073 46 FSFLGHQE-------RLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKP 117 (471)
Q Consensus 46 ~~ip~~~~-------~~k~l~~~~g~~~~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~ 117 (471)
.++|+.+. ++++|+++.| .+|+| +||+|+.+++|+||+||+++|+ +||||+|+||+++.
T Consensus 22 ~~~pi~~~~~~~~~~d~~~l~~~~g-----~~t~~---~Gl~g~~~~~S~Is~idg~~G~L~YRGy~I~dLa~~~----- 88 (436)
T 2h12_A 22 AEMPVLSGTLGPDVIDIRKLPAQLG-----VFTFD---PGYGETAACNSKITFIDGDKGVLLHRGYPIAQLAENA----- 88 (436)
T ss_dssp EEEEEECCSBSCCEEECTTHHHHHS-----CEEEC---TTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC-----
T ss_pred EEEeeecCCCCCceeeehhhcccCC-----cEeeC---CccCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC-----
Confidence 45666553 5778877755 88998 6999999999999999999995 99999999999986
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccC
Q 012073 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 197 (471)
Q Consensus 118 ~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~ 197 (471)
+||||+||||+|+|||++|+++|+++|.+++.+|+++.+++++||+++|||++|+++|++|+++++ +...
T Consensus 89 ----~feEvayLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~~~~------~~~~ 158 (436)
T 2h12_A 89 ----SYEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYP------DAND 158 (436)
T ss_dssp ----CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGGCC----------
T ss_pred ----CHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCc------cccc
Confidence 599999999999999999999999999999999999999999999999999999999999998532 2222
Q ss_pred CCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhcC-------CChHHHHHHHHHHHHhcC
Q 012073 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSD 270 (471)
Q Consensus 198 ~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~~~~~~~l~~a~n~~~ml~~-------~~~~~~~~l~~~LvL~AD 270 (471)
. ..++..++++++|||++|+|+|++||+..+++ +++|++++||++||++|+.+ ++|..+++||++||||||
T Consensus 159 ~-~~~~~~~~~a~rLiAk~ptiaa~~yr~~~g~~-~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhAD 236 (436)
T 2h12_A 159 I-AIPANRDLAAMRLIAKIPTIAAWAYKYTQGEA-FIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHAD 236 (436)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSC
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecC
Confidence 2 22467899999999999999999999887654 78999999999999999974 789999999999999999
Q ss_pred CCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--Ccc
Q 012073 271 HEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVV 348 (471)
Q Consensus 271 Heg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g--~~i 348 (471)
|| +|+||||+||+|||++|+|+|++|||++|+||+||||||+|++||.+| | +++++++||++.++++ ++|
T Consensus 237 He-~NaSTftaRvvaSt~ad~ysaiaAgi~aL~GPlHGGAne~v~~ml~ei----~---~~~~v~~~i~~~l~~~~g~~i 308 (436)
T 2h12_A 237 HE-QNASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARI----G---KKENIPAFIAQVKDKNSGVKL 308 (436)
T ss_dssp CS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHH----C---SGGGHHHHHHHHHCTTSCCCC
T ss_pred CC-CchHHHHHHHHHhcCccHHHHHHHHHHhcCCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhccCCCcc
Confidence 98 899999999999999999999999999999999999999999999987 6 5789999999999955 999
Q ss_pred cccCCCCCCCCCccHHHHHHHHHhh---CC--CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCcc
Q 012073 349 PGFGHGVLRKTDPRYTCQREFALKH---LP--DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEA 423 (471)
Q Consensus 349 pGfGH~vyr~~DPRa~~l~~~a~~~---~~--~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~ 423 (471)
|||||||||+.|||+++|+++++++ .+ ++++++++.+||+++.+ .++|+.|++|||||||+|+++++||||.
T Consensus 309 mGFGHrVYk~~DPRa~iLk~~a~~l~~~~g~~~~~~~~la~~lE~~al~--~~~~~~k~l~pNVDfysg~i~~~lGiP~- 385 (436)
T 2h12_A 309 MGFGHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALS--DDYFVQRKLYPNVDFYSGIILKAMGIPT- 385 (436)
T ss_dssp TTBCCSSCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--SHHHHHTTCCBCTHHHHHHHHHHTTCCG-
T ss_pred cCCCccccCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh--hhhccccCCCcChHHHHHHHHHHhCCCh-
Confidence 9999999999999999999999987 34 78999999999999844 4577789999999999999999999996
Q ss_pred ccchhhHhhhhhhHHHHHHHHHHHcC-CCccCCCccchhHH
Q 012073 424 RYYTVLFGVSRSLGICSQLIWDRALG-LPLERPKSVTLDWI 463 (471)
Q Consensus 424 ~~~t~lF~vsR~~GwlAH~ieq~~~~-~pI~RP~s~~~~~~ 463 (471)
++||+||++||++||+||++||+..+ .+|+||+++|+|..
T Consensus 386 ~~ft~lFaisR~~GW~AH~~Eq~~~~~~kI~RPr~~Y~G~~ 426 (436)
T 2h12_A 386 SMFTVLFAVARTTGWVSQWKEMIEEPGQRISRPRQLYIGAP 426 (436)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCEEEECSCC
T ss_pred hhhhhhhhhhccccHHHHHHHHHhCCCCceecccccccCCC
Confidence 99999999999999999999999987 56999999999863
No 5
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=100.00 E-value=2.5e-101 Score=802.54 Aligned_cols=376 Identities=28% Similarity=0.404 Sum_probs=353.8
Q ss_pred hhCCCcccceeecccccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHH
Q 012073 61 ELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKE 139 (471)
Q Consensus 61 ~~g~~~~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ 139 (471)
+||.++++.+|++ +.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++
T Consensus 9 ~~~~~~~~~~~~~-~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~ 78 (409)
T 2ibp_A 9 KTTGKILQSPCGP-IIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEELARLS---------TYEEVSYLILYGRLPTKR 78 (409)
T ss_dssp EESSCEECCTTSC-EEGGGTTCEEEEECSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHH
T ss_pred CCCCcccCcCCCC-CCCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHH
Confidence 7999999999998 77999999999999999999999 699999999999986 599999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhh----HHhhhccCCCCCCcchHHHHHHHHhh
Q 012073 140 QVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ----EAYEKGIHKSKYWEPTYEDSLNLIAR 215 (471)
Q Consensus 140 q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~----~~y~~~~~~~~~~e~~~e~a~~liA~ 215 (471)
|+++|+++|.+++.+|+++.++++.||++ |||++|+++|++|++++++. ++|..|.+|.++|+..++++++|||+
T Consensus 79 el~~f~~~l~~~~~lp~~~~~~~~~~p~~-hPM~~l~~~v~aL~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~a~~Lia~ 157 (409)
T 2ibp_A 79 ELEDYINRMKKYRELHPATVEVIRNLAKA-HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAK 157 (409)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHhCCcc-CchHHHHHHHHHHhccCccccchhhhhhcccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999987765 57888888887899999999999999
Q ss_pred hhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHH
Q 012073 216 VPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYL 293 (471)
Q Consensus 216 ~P~i~a~iyr~~~~~~~~~~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~ 293 (471)
+|+|+|++||+.+++ ++++|++++||++||++|+.+ +++..+++||++|||||||| +|+||||+|+++||++|+|+
T Consensus 158 ~p~i~a~~y~~~~g~-~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg-~naST~aaRv~aSt~ad~~s 235 (409)
T 2ibp_A 158 MPTIVAYHYRFSRGL-EVVRPRDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHE-VPASTFAAHVVASTLSDLYS 235 (409)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHcCC-CcccCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHhhcCCcHHH
Confidence 999999999998764 478899999999999999976 78999999999999999998 89999999999999999999
Q ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC-CCcccccCCCCCCCCCccHHHHHHHHHh
Q 012073 294 SFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNS-GKVVPGFGHGVLRKTDPRYTCQREFALK 372 (471)
Q Consensus 294 avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~-g~~ipGfGH~vyr~~DPRa~~l~~~a~~ 372 (471)
|++||+++|+||+||||||+|++||.++ + +++++++||++.+++ |++||||||||||+.|||+++|++++++
T Consensus 236 avaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~ 308 (409)
T 2ibp_A 236 SVAAAIAALKGPLHGGANEMAVRNYLEI----G---TPAKAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRD 308 (409)
T ss_dssp HHHHHHHHHTSTTTSCHHHHHHHHHHHH----C---CGGGHHHHHHHHTSTTCCCCTTBCCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCccCCchHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcCcCCCccccCCCCCchHHHHHHHHH
Confidence 9999999999999999999999999887 5 468999999999999 9999999999999999999999999998
Q ss_pred hC---CCC-hHHHHHHHHHHhh--hhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHH
Q 012073 373 HL---PDD-PLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDR 446 (471)
Q Consensus 373 ~~---~~~-~~~~~a~~le~~~--~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~ 446 (471)
+. +++ ++++++.+||+++ ++++ +.||++||||||+|+++++||||. ++||+||++||++||+||++||+
T Consensus 309 l~~~~~~~g~~~~~a~~le~~~l~~~~~----~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~ 383 (409)
T 2ibp_A 309 YVAKFGDPQNLFAIASAIEQEVLSHPYF----QQRKLYPNVDFWSGIAFYYMGIPY-EYFTPIFAMSRVVGWVAHVLEYW 383 (409)
T ss_dssp HHHHHCCTTCHHHHHHHHHHHHHHCHHH----HHTTCCBCGGGTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhCCChHHHHHHHHHHHHHccchhh----hhcCCCCChHHHHHHHHHHhCCCH-HhhhhHHHHhccccHHHHHHHHH
Confidence 73 455 9999999999999 6654 348999999999999999999996 99999999999999999999999
Q ss_pred HcCCCccCCCccchhH
Q 012073 447 ALGLPLERPKSVTLDW 462 (471)
Q Consensus 447 ~~~~pI~RP~s~~~~~ 462 (471)
..+ +|+||++.|+|.
T Consensus 384 ~~~-~i~RP~~~Y~G~ 398 (409)
T 2ibp_A 384 ENN-RIFRPRACYIGP 398 (409)
T ss_dssp GGC-CCCCCEEEECSC
T ss_pred hcC-CccCchhhccCC
Confidence 988 699999999986
No 6
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=100.00 E-value=4.6e-102 Score=809.86 Aligned_cols=372 Identities=26% Similarity=0.419 Sum_probs=340.9
Q ss_pred HHHHHHHhhCCCcccceeecccccccccccccceecceecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHh
Q 012073 54 RLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT 132 (471)
Q Consensus 54 ~~k~l~~~~g~~~~g~~tvd~~~~Glrgv~~~~t~iS~iD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~ 132 (471)
+|++|++ .|.+|+|+ ||.|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+
T Consensus 30 d~~~l~~------~g~~~~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~ 91 (426)
T 3l96_A 30 DIRTLGS------KGVFTFDP---GFTSTTSCESKITFIDGDEGILLHRGFPIDQLATDS---------NYLEVCYILLN 91 (426)
T ss_dssp ECTTHHH------HTCCEECT---TSSSEEEEEESSEEEEGGGTEEEETTEEHHHHHHHS---------CHHHHHHHHHH
T ss_pred eeeeccc------CCcEEeCC---CCCCceEEeEEeEEEECCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHC
Confidence 3566766 47999998 999999999999999999995 99999999999985 59999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHH
Q 012073 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNL 212 (471)
Q Consensus 133 G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~l 212 (471)
|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++ |+++.. ...+++.++++++|
T Consensus 92 G~LPt~~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~l~~~vsaL~~~------~~~~~~-~~~~~~~~~~a~rL 164 (426)
T 3l96_A 92 GEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAF------YHDSLD-VNNPRHREIAAFRL 164 (426)
T ss_dssp SSCCCHHHHHHHHHHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHTTGGGT------CGGGCC-TTSHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh------Cccccc-CCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999875 333321 12367888999999
Q ss_pred HhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhcC-------CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHh
Q 012073 213 IARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVA 285 (471)
Q Consensus 213 iA~~P~i~a~iyr~~~~~~~~~~~~~~l~~a~n~~~ml~~-------~~~~~~~~l~~~LvL~ADHeg~n~St~aarvva 285 (471)
|||+|+|+|++||++.|+ .+++|++++||++||++||++ ++|.++++||++|||||||| +|+||||+|+++
T Consensus 165 iAk~pti~a~~yr~~~G~-~~~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvva 242 (426)
T 3l96_A 165 LSKMPTMAAMCYKYSIGQ-PFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHE-QNASTSTVRTAG 242 (426)
T ss_dssp HHHHHHHHHHHHHHHHTC-CCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHh
Confidence 999999999999988754 478999999999999999964 48889999999999999999 899999999999
Q ss_pred hcCCChHHHHHHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCccH
Q 012073 286 SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRY 363 (471)
Q Consensus 286 St~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~--~ipGfGH~vyr~~DPRa 363 (471)
||++|+|+|++||+++|+||+||||||+|++||.++ + +++++++||++.+++|+ +||||||||||+.|||+
T Consensus 243 St~ad~ysaiaAgi~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~~~I~GfGHrVyk~~DPRa 315 (426)
T 3l96_A 243 SSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI----G---KKENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRA 315 (426)
T ss_dssp HTTCCHHHHHHHHHHHHHTTTTSSHHHHHHHHHHHC----C---SSSSTTTTSGGGCCSSCCTGGGTBCCSSCSSCCTTH
T ss_pred ccCCcHHHHHHHHHHhccCCccCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccH
Confidence 999999999999999999999999999999999876 5 35789999999999999 99999999999999999
Q ss_pred HHHHHHHHhhC---C-CChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHH
Q 012073 364 TCQREFALKHL---P-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGIC 439 (471)
Q Consensus 364 ~~l~~~a~~~~---~-~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~Gwl 439 (471)
++|+++|++++ + ++++++++.+||+++.+ +++++.|+++||||||+|+++++||||. ++||++|++||++||+
T Consensus 316 ~~l~~~a~~l~~~~g~~~~~~~~a~~le~~~~~--~~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR~~Gw~ 392 (426)
T 3l96_A 316 TVMRETCHEVLKELGTKDDLLEVAMELENIALN--DPYFIEKKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWI 392 (426)
T ss_dssp HHHHHHHHHHHHHTCSCCSSTTHHHHHHHHHHH--CHHHHHHTCCBCHHHHHHHHHHHTTCCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--cccccccCCCCchHHHHHHHHHHcCCCc-ccchhhhHHHHHHHHH
Confidence 99999998753 2 68999999999999976 5677789999999999999999999995 9999999999999999
Q ss_pred HHHHHHHHcCCCccCCCccchhH
Q 012073 440 SQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 440 AH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
||++||+..+.||+||+|+|+|.
T Consensus 393 AH~~Eq~~~~~~I~RPr~~Y~G~ 415 (426)
T 3l96_A 393 AHWSEMHSDGMKIARPRQLYTGY 415 (426)
T ss_dssp HHHHHHHHHHCCCCCCEEEECSC
T ss_pred HHHHHHHhcCCCccCCcceecCC
Confidence 99999999766899999999986
No 7
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=7e-100 Score=782.82 Aligned_cols=351 Identities=26% Similarity=0.396 Sum_probs=325.4
Q ss_pred ccccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q 012073 74 MVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (471)
Q Consensus 74 ~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~ 152 (471)
|+.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++
T Consensus 1 ~~~~Gl~g~~~~~T~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LLl~G~lPt~~el~~f~~~l~~~~ 71 (367)
T 2p2w_A 1 MIQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKS---------TFEETAYFLWYGKLPTKSELEEFKRKMADYR 71 (367)
T ss_dssp CCCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCcCCCCeeeeeeCeEEECCCCEEEECCeeHHHHHcCC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Confidence 356899999999999999999999 699999999999986 5999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 012073 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (471)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~ 232 (471)
.+|+++.++|+.+|+++|||++|+++|++|+++ |++ |+..++++++|||++|+|+|++||++.++ .
T Consensus 72 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~-------~~~~~~~a~~lia~~p~i~a~~y~~~~g~-~ 137 (367)
T 2p2w_A 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSM------DGN-------DEDLREKAIRVASVFPTILAYYYRYSKGK-E 137 (367)
T ss_dssp CCCHHHHHHHTTSCSCCCHHHHHHHHHSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTC-C
T ss_pred CCCHHHHHHHHhCccCCChHHHHHHHHHHHhcc------CCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 999999999999999999999999999999874 211 78899999999999999999999998764 4
Q ss_pred ccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchHH
Q 012073 233 IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (471)
Q Consensus 233 ~~~~~~~l~~a~n~~~ml~~~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e 312 (471)
++.|++++||++||++|+++..+..+++||++|||||||| +|+||||+||++||++|+|+|++|||++|+||+||||||
T Consensus 138 ~i~p~~~l~~a~nfl~ml~~~~~~~~~~ld~~LvL~ADHg-~NaSTftaRvvaSt~ad~ysavaagi~aL~GPlHGGAne 216 (367)
T 2p2w_A 138 LIRPRKDLSHVENFYYMMFGERNEKIRLLESAFILLMEQD-INASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASE 216 (367)
T ss_dssp CCCCCTTSCHHHHHHHHHHSCCCTTHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHH
T ss_pred CCCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHHccCCccCChHH
Confidence 7889999999999999998744888999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhh
Q 012073 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPP 392 (471)
Q Consensus 313 ~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~ 392 (471)
+|++||++| + +++++++||++.+++|++||||||||||+.|||+++|+++++++.+++++++++.+||+++.
T Consensus 217 ~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~- 288 (367)
T 2p2w_A 217 KVPPMLEEI----G---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIV- 288 (367)
T ss_dssp HHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHh----c---CchhHHHHHHHHHHcCCccccCCccccCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHHH-
Confidence 999999887 5 56899999999999999999999999999999999999999998667899999999999864
Q ss_pred hHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCccCCCccchhH
Q 012073 393 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 393 ~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
+++ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..| +|+||++.|+|.
T Consensus 289 ---~~~-~k~l~pNVDf~sg~v~~~lGip~-~~~t~lFai~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G~ 352 (367)
T 2p2w_A 289 ---SNK-IKNIYPNVDLYSSVLFEELGFPR-NMFTALFATARVVGWTAHVIEYVSDN-KLIRPTSEYVGP 352 (367)
T ss_dssp ---HTT-GGGCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCCCCCSC
T ss_pred ---HHh-ccCCCCChHHHHHHHHHHhCCCh-hhhhhHHHHhccccHHHHHHHHHhcC-CccCccccccCC
Confidence 344 68999999999999999999996 99999999999999999999999887 699999999995
No 8
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=100.00 E-value=4.2e-100 Score=784.96 Aligned_cols=354 Identities=24% Similarity=0.376 Sum_probs=319.0
Q ss_pred cceeecccccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 012073 68 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 146 (471)
Q Consensus 68 g~~tvd~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~ 146 (471)
|-.|+|. ||+|+.+++|+||+||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|++
T Consensus 3 ~~~~~~~---Gl~gv~~~~t~Is~idg~~g~L~YRGy~I~dLa~~~---------~feev~yLLl~G~lPt~~el~~f~~ 70 (375)
T 3tqg_A 3 AMTKTAK---GLRGQSAGETSIATVGKEGHGLTYRGYRIEDLAANA---------TFEEVAYLLLKNKLPTKSELDAYTK 70 (375)
T ss_dssp ----------------CCEESSEEECTTSCCEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred CCcccCC---ccCCCeEeeeeceEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCcCHHHHHHHHH
Confidence 3456664 99999999999999999887 699999999999985 5999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHH
Q 012073 147 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 226 (471)
Q Consensus 147 ~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~ 226 (471)
+|.+++.||+++.++|++||+++|||++|+++|++|++++++. .|+..++++++||||+|+|+|++||+
T Consensus 71 ~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~aL~~~~~~~-----------~~~~~~~~a~~LiAk~p~i~a~~yr~ 139 (375)
T 3tqg_A 71 KLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGNLEPEN-----------GFENEQNIADRLVAIFPAIQCYWYHY 139 (375)
T ss_dssp HHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCC-----------SGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCCCC-----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754331 27889999999999999999999998
Q ss_pred HhcCCcccCCCCC-CCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccc
Q 012073 227 IYKDGKIIPKDDS-LDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 303 (471)
Q Consensus 227 ~~~~~~~~~~~~~-l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~ 303 (471)
+.++ .++.|+++ +||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+
T Consensus 140 ~~g~-~~i~p~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe-~n~St~tarvvaSt~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 140 SHHG-KRIDTELDDLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHE-FNASTFAARVCSATLSDIYSAVTAAIATLR 217 (375)
T ss_dssp HHHC-CCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hcCC-CCcCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHccCCCHHHHHHHHHHhcc
Confidence 7654 57888876 9999999999976 78999999999999999999 899999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHH
Q 012073 304 GPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 380 (471)
Q Consensus 304 GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~ 380 (471)
||+||||||+|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. ++++++
T Consensus 218 GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~l~~~~~~~~~~ 290 (375)
T 3tqg_A 218 GPLHGGANEAAMDLIMLY----K---TPSEAIAGIKRKLANKELIMGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYLF 290 (375)
T ss_dssp SHHHHCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHTTTSTTTHHH
T ss_pred CcccCCHHHHHHHHHHHh----c---ChhHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999875 5 578999999999999999999999999999999999999999973 468999
Q ss_pred HHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCccCCCccch
Q 012073 381 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTL 460 (471)
Q Consensus 381 ~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~ 460 (471)
+++.++|+++.+ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..| +|+||++.|+
T Consensus 291 ~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFa~sR~~Gw~AH~~Eq~~~~-~iiRP~~~Y~ 361 (375)
T 3tqg_A 291 DISDAIENTMQD-------EKKLFPNLDFYSATAYHFLNIPT-KLFTPIFVMSRVTGWCAHIFEQRKDN-RIIRPNADYI 361 (375)
T ss_dssp HHHHHHHHHHHH-------HHCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEEC
T ss_pred HHHHHHHHHHHH-------hcCCCCChHHHHHHHHHHcCCCH-HHHHHHHHHHhHHHHHHHHHHHHhcC-CCCCCcceec
Confidence 999999999854 37999999999999999999996 99999999999999999999999988 6899999999
Q ss_pred hH
Q 012073 461 DW 462 (471)
Q Consensus 461 ~~ 462 (471)
|.
T Consensus 362 G~ 363 (375)
T 3tqg_A 362 GP 363 (375)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 9
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=100.00 E-value=5.1e-100 Score=789.79 Aligned_cols=365 Identities=24% Similarity=0.337 Sum_probs=318.0
Q ss_pred CCCcccceeecc---cccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCH
Q 012073 63 GKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSK 138 (471)
Q Consensus 63 g~~~~g~~tvd~---~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~ 138 (471)
|++++.+.|+++ +..||+|+.+++|+||+||+++| |+||||+|+||+++. +||||+||||+|+|||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~Gl~gv~~~~T~Is~idg~~g~L~YRGy~I~dLa~~~---------~fEevayLLl~G~LPt~ 88 (404)
T 3o8j_A 18 DTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLIHGKLPTR 88 (404)
T ss_dssp -----------------------CCCEESSEEECC-CCCEEETTEEHHHHHHHC---------CHHHHHHHHHTSSCCCH
T ss_pred CcchhhcCcccCCCCCCCCCCCceEeeeeceeeeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcCcCCCH
Confidence 556667777776 66899999999999999999888 699999999999985 59999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhH
Q 012073 139 EQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPV 218 (471)
Q Consensus 139 ~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~ 218 (471)
+|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|++++++. ++..++..++++++||||+|+
T Consensus 89 ~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~L~~~vsaL~~~~~~~--------~d~~~~~~~~~a~rLiAk~pt 160 (404)
T 3o8j_A 89 DELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEK--------EGHTVSGARDIADKLLASLSS 160 (404)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCC--------TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCccc--------ccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754432 122356788999999999999
Q ss_pred HHHHHHHHHhcCCcccC-CCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHH
Q 012073 219 VAAYVYQRIYKDGKIIP-KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSF 295 (471)
Q Consensus 219 i~a~iyr~~~~~~~~~~-~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~av 295 (471)
|+|++||...++ +++. |++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|+
T Consensus 161 i~a~~yr~~~g~-~~i~~~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~N~St~taRvvaSt~ad~ysav 238 (404)
T 3o8j_A 161 ILLYWYHYSHNG-ERIQPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAI 238 (404)
T ss_dssp HHHHHHHHHHHC-CCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SSHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhcCCCHHHHH
Confidence 999999987664 4554 56899999999999976 78999999999999999999 8999999999999999999999
Q ss_pred HHHHhccccccccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC-
Q 012073 296 AAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL- 374 (471)
Q Consensus 296 aAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~- 374 (471)
+|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++.
T Consensus 239 aagi~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~l~~~a~~l~~ 311 (404)
T 3o8j_A 239 IGAIGALRGPKHGGANEVSLEIQQRY----E---TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSE 311 (404)
T ss_dssp HHHHHHHTSTTTTCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhcCCcccCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999765 5 578999999999999999999999999999999999999999874
Q ss_pred --CCChHHHHHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCc
Q 012073 375 --PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPL 452 (471)
Q Consensus 375 --~~~~~~~~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI 452 (471)
+++++++++.+||+++.+ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..| +|
T Consensus 312 ~~g~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-ri 382 (404)
T 3o8j_A 312 EGGSLKMYHIADRLETVMWE-------TKKMFPNLDWFSAVSYNMMGVPT-EMFTPLFVIARVTGWAAHIIEQRQDN-KI 382 (404)
T ss_dssp HHSCCHHHHHHHHHHHHHHH-------HHCCCBCTTTHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CC
T ss_pred hcCCcHHHHHHHHHHHHHHH-------hcCCCcChHHHHHHHHHHcCCCh-HhHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 468999999999998743 47999999999999999999995 99999999999999999999999988 58
Q ss_pred cCCCccchhH
Q 012073 453 ERPKSVTLDW 462 (471)
Q Consensus 453 ~RP~s~~~~~ 462 (471)
+||++.|+|.
T Consensus 383 iRPr~~Y~G~ 392 (404)
T 3o8j_A 383 IRPSANYTGP 392 (404)
T ss_dssp CCCCEEECSC
T ss_pred CCCcceecCC
Confidence 9999999986
No 10
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-99 Score=779.34 Aligned_cols=355 Identities=23% Similarity=0.343 Sum_probs=333.5
Q ss_pred ccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012073 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (471)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (471)
.+||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~l 72 (363)
T 2c6x_A 2 HYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNH---------SFEEAAYLILFGKLPSTEELQVFKDKLAAERNL 72 (363)
T ss_dssp CGGGTTCCCEEESSEEEETTTTEEEETTEEHHHHHHHS---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTSC
T ss_pred CCcCCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCC
Confidence 4799999999999999999999 699999999999985 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 012073 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (471)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~~ 234 (471)
|+++.++++.+|+++|||++|+++|++|++ + . . .|+..++++++|||++|+|+|++||++.++ +++
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~-~-~---------~--~~~~~~~~a~~Lia~~p~i~a~~~~~~~g~-~~i 138 (363)
T 2c6x_A 73 PEHIERLIQSLPNNMDDMSVLRTVVSALGE-N-T---------Y--TFHPKTEEAIRLIAITPSIIAYRKRWTRGE-QAI 138 (363)
T ss_dssp CHHHHHHHHHSCSSSCHHHHHHHHHHHHCC-S-S---------C--CSSCCHHHHHHHHHHHHHHHHHHHHHHTTC-CCC
T ss_pred CHHHHHHHHhCcccCCchHHHHHHHHhhcC-C-C---------C--ChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999999999986 1 1 0 178899999999999999999999998754 478
Q ss_pred CCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchHH
Q 012073 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (471)
Q Consensus 235 ~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e 312 (471)
+|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||
T Consensus 139 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne 217 (363)
T 2c6x_A 139 APSSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEHG-MNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPS 217 (363)
T ss_dssp CCCTTSCSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCCCH
T ss_pred CCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHhcCccHHHHHHHHHHHcccCccCCchH
Confidence 899999999999999976 78999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhhh
Q 012073 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPP 392 (471)
Q Consensus 313 ~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~ 392 (471)
+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++++++++++++.+||+++.+
T Consensus 218 ~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~ 290 (363)
T 2c6x_A 218 AVTKMLEDI----G---EKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLALHVEAEAIR 290 (363)
T ss_dssp HHHHHHHTC----C---SSTTHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----C---ChhhHHHHHHHHHHcCCcccCCCCcccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999875 5 467899999999999999999999999999999999999999987789999999999999976
Q ss_pred hHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCccCCCccchhHH
Q 012073 393 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWI 463 (471)
Q Consensus 393 ~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~~ 463 (471)
...+||+.|+++||||||+|+++++||||. ++||++|++||++||+||++||+.++ +|+||+++|+|..
T Consensus 291 ~~g~yf~~k~l~pNVD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~ 359 (363)
T 2c6x_A 291 LLEIYKPGRKLYTNVEFYAAAVMRAIDFDD-ELFTPTFSASRMVGWCAHVLEQAENN-MIFRPSAQYTGAI 359 (363)
T ss_dssp HHHHHSCSSCCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCEEEECSCC
T ss_pred hhccccccCCCCcChHHHHHHHHHHhCCCh-hhhhhhhHHhccccHHHHHHHHHHcC-CccCCccccCCCC
Confidence 433788999999999999999999999996 99999999999999999999999998 8999999999853
No 11
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=100.00 E-value=1.7e-98 Score=774.90 Aligned_cols=353 Identities=27% Similarity=0.401 Sum_probs=330.2
Q ss_pred cccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 012073 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (471)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (471)
+||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 6 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LL~~G~lPt~~el~~f~~~l~~~~~lp 76 (377)
T 1o7x_A 6 KGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVP 76 (377)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEECCccHHHHHcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCCC
Confidence 699999999999999999999 699999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 012073 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (471)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~~~ 235 (471)
+++.++++.+|+++|||++|+++|++|+++ |++. + .|+..++++++|||++|+|+|++||+..++ ++++
T Consensus 77 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~--~--~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i~ 145 (377)
T 1o7x_A 77 QEVLDTIYLMPKEADAIGLLEVGTAALASI------DKNF--K--WKENDKEKAISIIAKMATLVANVYRRKEGN-KPRI 145 (377)
T ss_dssp HHHHHHHHHSCTTSCHHHHHHHHHHHHHHH------CCCC--C--SSSSHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCC
T ss_pred HHHHHHHHhCcccCCcHHHHHHHHHHHhhc------CCCc--C--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC
Confidence 999999999999999999999999999874 2222 1 289999999999999999999999988754 4788
Q ss_pred CCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchHHH
Q 012073 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (471)
Q Consensus 236 ~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~ 313 (471)
|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||+
T Consensus 146 p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~ad~~savaagi~aL~GplHGGAne~ 224 (377)
T 1o7x_A 146 PEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHE-VPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEE 224 (377)
T ss_dssp CCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CChHHHHHHHHHhcCCcHHHHHHHHHHhcCCCCCCChHHH
Confidence 99999999999999976 78999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CC-ChHHHHHHHHHH
Q 012073 314 VLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PD-DPLFQLVSKLFE 388 (471)
Q Consensus 314 v~~~l~~i~~~ig~~~~~~~~~~~v~~~l-~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~---~~-~~~~~~a~~le~ 388 (471)
|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. ++ +++++++.+||+
T Consensus 225 v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~l~~~~~~~~~~~~~a~~le~ 297 (377)
T 1o7x_A 225 AFKQFIEI----G---DPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEE 297 (377)
T ss_dssp HHHHHHHH----C---SGGGHHHHHHHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----C---ChhHHHHHHHHHHHhcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999887 5 5689999999999 99999999999999999999999999999983 45 789999999999
Q ss_pred hhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHc-CCCccCCCccchhHH
Q 012073 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDWI 463 (471)
Q Consensus 389 ~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~~ 463 (471)
++.+++ +.||++||||||+|+++++||||. ++||++|++||++||+||++||+.+ + +|+||+++|+|.-
T Consensus 298 ~~~~~~----~~k~l~pNVD~~sg~v~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~~ 367 (377)
T 1o7x_A 298 LGIKQF----SSKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQH-RLIRPRALYVGPE 367 (377)
T ss_dssp HHHHHH----TTTTCCBCTTTTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEECSCS
T ss_pred HHHHHH----hhcCCCCChHHHHHHHHHHhCCCh-hhhhhHHHHhhhccHHHHHHHHHhccC-CccCCcccccCCC
Confidence 997643 678999999999999999999996 9999999999999999999999999 6 8999999999963
No 12
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=5.4e-98 Score=771.23 Aligned_cols=355 Identities=26% Similarity=0.391 Sum_probs=330.3
Q ss_pred cccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 012073 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (471)
Q Consensus 77 ~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (471)
+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 5 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~lp 75 (377)
T 1iom_A 5 RGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKS---------SFEETTFLLLHGRLPRRQELEEFSAALARRRALP 75 (377)
T ss_dssp GGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCCC
Confidence 699999999999999999999 699999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 012073 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (471)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~~~ 235 (471)
+++.++|+.+|+++|||++|+++|++|+++++. . .+.+|+..++++++|||++|+|+|++||+..++ ++++
T Consensus 76 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~-------~-~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i~ 146 (377)
T 1iom_A 76 AHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPT-------E-GDISREALYEKGLDLIAKFATIVAANKRLKEGK-EPIP 146 (377)
T ss_dssp HHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCTT-------T-TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCC
T ss_pred HHHHHHHHhCCcCCCchhHHHHHHHHHhccCCC-------c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCC
Confidence 999999999999999999999999999875321 1 133689999999999999999999999998764 4788
Q ss_pred CCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchHHH
Q 012073 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (471)
Q Consensus 236 ~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~ 313 (471)
|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||+
T Consensus 147 p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne~ 225 (377)
T 1iom_A 147 PREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHG-FNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEA 225 (377)
T ss_dssp CCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHH
T ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHcccCccCChhHH
Confidence 99999999999999976 78999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 012073 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (471)
Q Consensus 314 v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~~a~~le~~~ 390 (471)
|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.+||+++
T Consensus 226 v~~ml~ei----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~ 298 (377)
T 1iom_A 226 VMRMIQEI----G---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEA 298 (377)
T ss_dssp HHHHHHHH----C---SHHHHHHHHHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh----c---CchhHHHHHHHHHHCCCcccCCCCcccCCCCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999887 5 578999999999999999999999999999999999999999873 6789999999999998
Q ss_pred hhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCccCCCccchhH
Q 012073 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 391 ~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
.+ +++ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+.+|+||++.|+|.
T Consensus 299 ~~---~~~-~k~l~pNVD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y~G~ 365 (377)
T 1iom_A 299 GK---VLN-PRGIYPNVDFYSGVVYSDLGFSL-EFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGE 365 (377)
T ss_dssp HH---HHT-TTTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSC
T ss_pred HH---Hhc-cCCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhhcCCcccccccccCC
Confidence 54 244 78999999999999999999996 999999999999999999999999334799999999985
No 13
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-98 Score=774.17 Aligned_cols=356 Identities=23% Similarity=0.341 Sum_probs=331.3
Q ss_pred eeecccccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 012073 70 ITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKEL 148 (471)
Q Consensus 70 ~tvd~~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l 148 (471)
+|+| +||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||++|+++|+++|
T Consensus 3 ~~~~---~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l 70 (378)
T 1vgm_A 3 VEVS---RGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYA---------SYEELIHLMLYGELPNRQQLNQIKGII 70 (378)
T ss_dssp CCCS---GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred cccC---CccCCCeeeeeeceEEECCCCeEEEcCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3555 699999999999999999999 699999999999985 599999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHh
Q 012073 149 RDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIY 228 (471)
Q Consensus 149 ~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~ 228 (471)
.+++.+|+++.++++.+|+++|||++|+++|++|+++ |++.. + |+..++++++|||++|+|+|++||++.
T Consensus 71 ~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~~---~-~~~~~~~a~~Lia~~p~i~a~~y~~~~ 140 (378)
T 1vgm_A 71 NESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASI------YDPKW---N-RATNKELAVQIIAKTATITANIYRAKE 140 (378)
T ss_dssp HTCCCCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH------HCCCC---C-TTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHccCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHhcc------CCccC---C-HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999874 22221 2 889999999999999999999999987
Q ss_pred cCCcccCCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhcccccc
Q 012073 229 KDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 306 (471)
Q Consensus 229 ~~~~~~~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~Gpl 306 (471)
++ +++.|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+
T Consensus 141 g~-~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~Gpl 218 (378)
T 1vgm_A 141 GL-KPKIPEPSESYAESFLAATFGKKPTQEEIKAMDASLILYTDHE-VPASTTAALVASSTLSDMYSCIVAALAALKGPL 218 (378)
T ss_dssp TC-CCCCCCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTT
T ss_pred CC-CCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Confidence 54 478899999999999999976 78999999999999999998 899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCccHHHHHHHHHhhC---C-CChHHH
Q 012073 307 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQ 381 (471)
Q Consensus 307 HGgA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l-~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~---~-~~~~~~ 381 (471)
||||||+|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. + ++++++
T Consensus 219 HGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~ 291 (378)
T 1vgm_A 219 HGGAAEEAFKQFVEI----G---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKYYE 291 (378)
T ss_dssp TSCHHHHHHHHHHHH----C---SGGGHHHHHHHHTTTSCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHh----C---CHhHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999887 5 5689999999999 99999999999999999999999999999973 4 578999
Q ss_pred HHHHHHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHc-CCCccCCCccch
Q 012073 382 LVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTL 460 (471)
Q Consensus 382 ~a~~le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~ 460 (471)
++.+||+++.+++ +.||++||||||+|+++++||||. ++||++|++||++||+||++||+.+ + +|+||+++|+
T Consensus 292 ~a~~le~~~~~~~----~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~ 365 (378)
T 1vgm_A 292 IAERIEKLGVDTF----GSKHIYPNTDFYSGIVFYALGFPI-YMFTSLFALSRVLGWLAHIIEYVEEQH-RLIRPRALYI 365 (378)
T ss_dssp HHHHHHHHHHHHH----GGGTCCBCTTTTHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEEC
T ss_pred HHHHHHHHHHHHH----hhCCCCCChHHHHHHHHHHhCCCH-HhhhHHHHHHhhccHHHHHHHHHhccC-CccCcccccC
Confidence 9999999987644 568999999999999999999996 9999999999999999999999999 6 8999999999
Q ss_pred hH
Q 012073 461 DW 462 (471)
Q Consensus 461 ~~ 462 (471)
|.
T Consensus 366 G~ 367 (378)
T 1vgm_A 366 GP 367 (378)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 14
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=100.00 E-value=3.8e-98 Score=770.90 Aligned_cols=354 Identities=26% Similarity=0.369 Sum_probs=331.0
Q ss_pred ccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012073 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (471)
Q Consensus 76 ~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (471)
.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~l 72 (371)
T 1aj8_A 2 AKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELS---------TFEEVVYLLWWGKLPSLSELENFKKELAKSRGL 72 (371)
T ss_dssp CGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCC
Confidence 3799999999999999999999 699999999999986 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCC-CCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 012073 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-YWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (471)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~-~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~ 233 (471)
|+++.++|+.+|+++|||++|+++|++|+++++ +. ++. +|+..++++++|||++|+|+|++||+..++ ++
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~-~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 143 (371)
T 1aj8_A 73 PKEVIEIMEALPKNTHPMGALRTIISYLGNIDD-------SG-DIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGL-EY 143 (371)
T ss_dssp CHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHST-------TT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHHhccCC-------cc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 999999999999999999999999999987422 12 223 689999999999999999999999998764 47
Q ss_pred cCCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchH
Q 012073 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (471)
Q Consensus 234 ~~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~ 311 (471)
++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 144 i~p~~~ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 222 (371)
T 1aj8_A 144 VPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAV 222 (371)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCC-CChhHHHHHHHhhcCCcHHHHHHHHHHHcCCCccCCch
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 012073 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVP 391 (471)
Q Consensus 312 e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~ 391 (471)
|+|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ +++++++++.+||+++.
T Consensus 223 e~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~~~~~-~~~~~~~~a~~le~~~~ 294 (371)
T 1aj8_A 223 EEAIKQFMEI----G---SPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKL-GDKKLFEIAERLERLVE 294 (371)
T ss_dssp HHHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCeeecCCccccCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 9999999887 5 46899999999999999999999999999999999999999998 67899999999999863
Q ss_pred hhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCccCCCccchhH
Q 012073 392 PILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 392 ~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||++.|+|.
T Consensus 295 ----~~~~~k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 359 (371)
T 1aj8_A 295 ----EYLSKKGISINVDYWSGLVFYGMKIPI-ELYTTIFAMGRIAGWTAHLAEYVSHN-RIIRPRLQYVGE 359 (371)
T ss_dssp ----HHTTTTTCCBCTTTTHHHHHHTTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCEEEECSC
T ss_pred ----HhccCCCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhcC-CccCchhhccCC
Confidence 466789999999999999999999996 99999999999999999999999988 699999999985
No 15
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=100.00 E-value=4.9e-98 Score=772.56 Aligned_cols=359 Identities=25% Similarity=0.339 Sum_probs=330.3
Q ss_pred cccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012073 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (471)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (471)
+.+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.
T Consensus 5 ~~~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~ 75 (378)
T 1a59_A 5 IHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKC---------SFEQVAYLLWNSELPNDSELKAFVNFERSHRK 75 (378)
T ss_dssp CCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCS
T ss_pred CCCccCCCeeeeeeceEEECCCCeEEEcCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 44799999999999999999999 699999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 012073 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (471)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~ 233 (471)
+|+++.++|+.+|+++|||++|+++|++|+++++ +. .+.+|+..++++++|||++|+|+|++||+.+++ ++
T Consensus 76 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~-~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 146 (378)
T 1a59_A 76 LDENVKGAIDLLSTACHPMDVARTAVSVLGANHA-------RA-QDSSPEANLEKAMSLLATFPSVVAYDQRRRRGE-EL 146 (378)
T ss_dssp CCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCT-------TT-TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCC-------Cc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 9999999999999999999999999999987532 11 133689999999999999999999999998764 47
Q ss_pred cCCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchH
Q 012073 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (471)
Q Consensus 234 ~~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~ 311 (471)
++|++++||++||++|+++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 147 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 225 (378)
T 1a59_A 147 IEPREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHS-FNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGAN 225 (378)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHccCCccCCch
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHH
Q 012073 312 QEVLLWIKSVVDECGENVT---TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSK 385 (471)
Q Consensus 312 e~v~~~l~~i~~~ig~~~~---~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~~a~~ 385 (471)
|+|++||.+|.+. |++.+ ++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.+
T Consensus 226 e~v~~~l~~i~~~-~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~~~~a~~ 304 (378)
T 1a59_A 226 EAVMHTFEEIGIR-KDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNG 304 (378)
T ss_dssp HHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCccccchHHHHHHHHHHHHhCCCeeeCCCCcccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999987432 22111 27899999999999999999999999999999999999999873 67899999999
Q ss_pred HHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCccCCCccchhH
Q 012073 386 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 386 le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
||+++.+ .||++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|.
T Consensus 305 le~~~~~-------~k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 372 (378)
T 1a59_A 305 LEAAMEE-------AKQIKPNLDYPAGPTYNLMGFDT-EMFTPLFIAARITGWTAHIMEQVADN-ALIRPLSEYNGP 372 (378)
T ss_dssp HHHHHHH-------HHCCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHTC-CCCCCCCCCCSC
T ss_pred HHHHHHH-------HhCCCCChHHHHHHHHHHhCCCh-hhcchhhhhhcchhHHHHHHHHHhcC-CCcCchhhccCC
Confidence 9999744 27999999999999999999995 99999999999999999999999988 699999999985
No 16
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=100.00 E-value=3.9e-98 Score=774.14 Aligned_cols=355 Identities=24% Similarity=0.349 Sum_probs=331.3
Q ss_pred cccccccccccceecceecCCCC-eeecCCCHHHHHh-hCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q 012073 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQK-LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (471)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~-~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~ 152 (471)
+.+||+|+.+++|+||+||+++| ++||||+|+||++ +. +||||+||||+|+|||++|+++|+++|.+++
T Consensus 7 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~ 77 (385)
T 2ifc_A 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGA---------QDEEIQYLFLYGNLPTEQELRKYKETVQKGY 77 (385)
T ss_dssp BCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHTTC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHGGG
T ss_pred CCCCcCCCeeeeeeCeEEECCCCEEEECCccHHHHHhcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc
Confidence 44799999999999999999999 6999999999999 64 5999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 012073 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (471)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~ 232 (471)
.+|+++.++++.+|+++|||++|+++|++|+++ |++. + ++|+..++++++|||++|+|+|++||+..++ +
T Consensus 78 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~--~-~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~ 147 (385)
T 2ifc_A 78 KIPDFVINAIRQLPRESDAVAMQMAAVAAMAAS------ETKF--K-WNKDTDRDVAAEMIGRMSAITVNVYRHIMNM-P 147 (385)
T ss_dssp CCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHH------CTTC--C-CCTTTHHHHHHHHHHHHHHHHHHHHHHHTTC-C
T ss_pred CCCHHHHHHHHhCCCCCCchHHHHHHHHHHHhc------CCcc--c-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 999999999999999999999999999999874 2222 2 4789999999999999999999999988754 4
Q ss_pred ccCCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccch
Q 012073 233 IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310 (471)
Q Consensus 233 ~~~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA 310 (471)
+++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||
T Consensus 148 ~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGA 226 (385)
T 2ifc_A 148 AELPKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHE-VPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGA 226 (385)
T ss_dssp CCCCCCCSCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSSH
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCC-ccHHHHHHHHHHhcCCcHHHHHHHHHHHccCCccCCh
Confidence 78899999999999999976 78999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCccHHHHHHHHHhh----CCCChHHHHHHH
Q 012073 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKH----LPDDPLFQLVSK 385 (471)
Q Consensus 311 ~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l-~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~----~~~~~~~~~a~~ 385 (471)
||+|++||.++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++ .+++++++++.+
T Consensus 227 ne~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~~ 299 (385)
T 2ifc_A 227 AEAAIAQFDEI----K---DPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATK 299 (385)
T ss_dssp HHHHHHHHHHH----C---SGGGHHHHHHHHTTTSSSCCTTBCCSSCSSCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 99999999887 5 4689999999999 9999999999999999999999999999998 346899999999
Q ss_pred HHHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCcc--ccchhhHhhhhhhHHHHHHHHHHHc-CCCccCCCccchhH
Q 012073 386 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEA--RYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDW 462 (471)
Q Consensus 386 le~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~--~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~ 462 (471)
||+++.+++ +.||++||||||+|+++++|||| . ++||++|++||++||+||++||+.+ + +|+||++.|+|.
T Consensus 300 le~~~~~~~----~~k~l~pNVD~~sg~v~~~lGip-~~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~ 373 (385)
T 2ifc_A 300 LEDFGIKAF----GSKGIYPNTDYFSGIVYMSIGFP-LRNNIYTALFALSRVTGWQAHFIEYVEEQQ-RLIRPRAVYVGP 373 (385)
T ss_dssp HHHHHHHHH----GGGTCCBCTTTTHHHHHHHHTCC-SGGGHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECSC
T ss_pred HHHHHHHHH----hhcCCCCChHHHHHHHHHHcCCC-cchhhhhhHHHHhhcccHHHHHHHHHhccC-CccCcccccCCC
Confidence 999997644 56899999999999999999998 6 8999999999999999999999999 7 899999999986
No 17
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.4e-98 Score=770.66 Aligned_cols=352 Identities=28% Similarity=0.414 Sum_probs=328.4
Q ss_pred cccccccccccceecceecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012073 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (471)
Q Consensus 75 ~~~Glrgv~~~~t~iS~iD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (471)
+.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.
T Consensus 3 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~ 73 (373)
T 1vgp_A 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFS---------NFEEVSYLILYGKLPNREELNWFQEKLREERY 73 (373)
T ss_dssp CCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCC
T ss_pred CCCccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccC
Confidence 34799999999999999999999 699999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 012073 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (471)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~f~~~y~~~~~~~~~~e~~~e~a~~liA~~P~i~a~iyr~~~~~~~~ 233 (471)
+|+++.++|+.+|+++|||++|+++|++|++++ . . + |+..++++++|||++|+|+|++||+..++ ++
T Consensus 74 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~-------~-~---~-~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 140 (373)
T 1vgp_A 74 LPDFIIKFLREVRKDAQPMDILRTAVSLLGIED-------S-K---N-DERTDIKGIKLISKFPTIVANYARLRKGL-DI 140 (373)
T ss_dssp CCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHC-------C-C---C-SSCHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHHhccC-------C-C---C-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 999999999999999999999999999998742 1 1 2 88899999999999999999999998765 47
Q ss_pred cCCCCCCCHHHHHHHHhcC--CChHHHHHHHHHHHHhcCCCCCCCchhHHHHHhhcCCChHHHHHHHHhccccccccchH
Q 012073 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (471)
Q Consensus 234 ~~~~~~l~~a~n~~~ml~~--~~~~~~~~l~~~LvL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~ 311 (471)
++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 141 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~aL~GplHGGAn 219 (373)
T 1vgp_A 141 IEPDPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHE-MNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGAN 219 (373)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHhcCCCCcCCHH
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCC--hHHHHHHHH
Q 012073 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDD--PLFQLVSKL 386 (471)
Q Consensus 312 e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DPRa~~l~~~a~~~~---~~~--~~~~~a~~l 386 (471)
|+|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +.+ ++++++.+|
T Consensus 220 e~v~~ml~~i----~---~~~~~~~~i~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~a~~l 292 (373)
T 1vgp_A 220 YEALKMFKEI----G---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKV 292 (373)
T ss_dssp CHHHHHHHHS----C---SSSSHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 9999999876 5 467899999999999999999999999999999999999999873 555 899999999
Q ss_pred HHhhhhhHhhcCCCCCCCCchhhHHHHHHhccCCCccccchhhHhhhhhhHHHHHHHHHHHcCCCccCCCccchhH
Q 012073 387 FEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 387 e~~~~~~l~e~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
|+++. ++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||++.|+|.
T Consensus 293 e~~~~----~~~~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 362 (373)
T 1vgp_A 293 EEIGI----KYLGPKGIYPNVDFFSSIVFYSLGFEP-DFFPAVFASARVVGWVAHIMEYIKDN-KIIRPKAYYKGE 362 (373)
T ss_dssp HHHHH----HHHGGGTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHGGGC-CCCCCCCCCCSC
T ss_pred HHHHH----HhcccCCCCCChHHHHHHHHHHcCCCH-HhhhhhHHhhccccHHHHHHHHHhcC-CCcCccccccCC
Confidence 99974 355678999999999999999999996 99999999999999999999999988 699999999985
No 18
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=43.51 E-value=59 Score=33.01 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
-++-+.+|++++|+.|++.+.+.|..-|.-+.+ +.. +...++.+- -++|-..+++++.+|.
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~St~tarvvaSt--~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 153 LTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSAT--LSDIYSAVTAAIATLR 217 (375)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTT--TCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHhcc
Confidence 468899999999999999999999988765543 443 344556553 4789999999999984
No 19
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=37.56 E-value=14 Score=32.65 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=18.9
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q 012073 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (471)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LL 130 (471)
..|||++++||.+. +.|+++=|+
T Consensus 15 FtyrG~~ld~Ll~m----------s~e~l~~L~ 37 (142)
T 3u5c_P 15 HSYRGVDLEKLLEM----------STEDFVKLA 37 (142)
T ss_dssp CBSSSCBHHHHHTT----------CHHHHHHHS
T ss_pred EEEccccHHHHHcC----------CHHHHHHHh
Confidence 48999999999987 478877763
No 20
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.28 E-value=13 Score=32.38 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.3
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHH
Q 012073 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (471)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 129 (471)
..|||++++||.+. +.||++=|
T Consensus 6 ftyrG~~ld~L~~m----------s~~~l~~L 27 (132)
T 3j20_T 6 FRYRGYTLEQLMNM----------SLEELARL 27 (132)
T ss_dssp CCSSSSCHHHHHHH----------HHHHHHHH
T ss_pred EEEcCCcHHHHHcC----------CHHHHHHH
Confidence 47999999999997 47887766
No 21
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=34.00 E-value=1e+02 Score=31.22 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHh
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMAL 182 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsaL 182 (471)
++-+.++++++|+.|++.+.+.|..-|--+.+ +.. +...++.+ ..++|-..+++|+++|
T Consensus 154 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL 216 (378)
T 1a59_A 154 DYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITS--TLADLHSAVTGAIGAL 216 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 47789999999999999999999988765542 343 34444444 3478999999999999
No 22
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=33.34 E-value=1.1e+02 Score=31.03 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+.+ +.. +...++.+ ..++|-..+++++.+|.
T Consensus 151 s~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 214 (371)
T 1aj8_A 151 SHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGS--TLSDYYSAILAGIGALK 214 (371)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcC
Confidence 47789999999999999999999988765542 443 33344444 34789999999999983
No 23
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=33.24 E-value=1e+02 Score=31.57 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
-++-+.+|.+++|+.|++++.+.|..-|.-+.+ +.. +...++.+- -++|-..+++++.+|.
T Consensus 182 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~St~taRvvaSt--~ad~ysavaagi~aL~ 246 (404)
T 3o8j_A 182 DSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGT--GSDVYSAIIGAIGALR 246 (404)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHTT--TCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHhc--CCCHHHHHHHHHHHcc
Confidence 467799999999999999999999988765542 333 344555553 4679999999999984
No 24
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=33.05 E-value=43 Score=32.98 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred ChhhHHHHHHHHHhCCCcccccCCCCCCCCCc-cHHHHHHHHHhh
Q 012073 330 TTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (471)
Q Consensus 330 ~~~~~~~~v~~~l~~g~~ipGfGH~vyr~~DP-Ra~~l~~~a~~~ 373 (471)
+++++++.+.+.++.|.-|.+-||-+...++| ..+++.+.++++
T Consensus 302 ~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey 346 (348)
T 4ay7_A 302 PVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEF 346 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999998887 577777777765
No 25
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=32.82 E-value=1.1e+02 Score=31.01 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (377)
T 1iom_A 152 SHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFS--TETDLYSAITAAVASLK 215 (377)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 47789999999999999999999988765542 4433 3344444 34789999999999983
No 26
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=32.35 E-value=1.3e+02 Score=30.59 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|--+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 156 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 219 (385)
T 2ifc_A 156 SYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVS--TLSDMYSGITAALAALK 219 (385)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHHHHHHHHHHh--cCCcHHHHHHHHHHHcc
Confidence 57799999999999999999999988865542 4443 3344444 34689999999999983
No 27
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=31.76 E-value=80 Score=32.52 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
-++-+.++.+|+|+.|++.+.+.|..-|.-+.+ +.. +...++.+ ..++|-..+++++++|.
T Consensus 195 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaST~taRvvaS--t~ad~ysavaagi~aL~ 259 (414)
T 3hwk_A 195 LGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTS--TQSDIYSAVTGAIGALK 259 (414)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHhc
Confidence 357789999999999999999999988765542 433 34455554 34679999999999984
No 28
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=31.73 E-value=18 Score=32.07 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.5
Q ss_pred eeecCCCHHHHHhh
Q 012073 98 IRFRGLSIPECQKL 111 (471)
Q Consensus 98 i~yRGy~I~eL~~~ 111 (471)
..|||++++||.+.
T Consensus 11 ftyrG~~l~~L~~~ 24 (144)
T 2xzm_S 11 FTFRGKGLEELTAL 24 (144)
T ss_dssp CCCCTTCHHHHHHH
T ss_pred eeecCCcHHHHHhh
Confidence 48999999999993
No 29
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=31.32 E-value=1.2e+02 Score=30.73 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+.+ +.. ....++.+ ..++|-..+++++++|.
T Consensus 148 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~aL~ 211 (373)
T 1vgp_A 148 SHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVAS--TFSDLYSSIVAGISALK 211 (373)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCccHHHHHHHHHHhcC
Confidence 47789999999999999999999988865542 333 33444444 34789999999999993
No 30
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=31.28 E-value=1.2e+02 Score=31.13 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++++.+|.
T Consensus 182 s~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naST~aaRv~aS--t~ad~~savaagi~aL~ 245 (409)
T 2ibp_A 182 GHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPASTFAAHVVAS--TLSDLYSSVAAAIAALK 245 (409)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 47789999999999999999999988865542 4433 3344444 34788899999999983
No 31
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=30.22 E-value=1.5e+02 Score=30.04 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|--+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (378)
T 1vgm_A 152 SYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASS--TLSDMYSCIVAALAALK 215 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 57789999999999999999999988865542 4443 3344444 34688899999999984
No 32
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=24.32 E-value=64 Score=28.97 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=29.1
Q ss_pred HHHHHhCC---CCCHHHHHHHHHHHHhh-CCCCHHHHHHHH
Q 012073 127 LWLLLTGK---VPSKEQVDGLSKELRDR-ATVPDYVYKAID 163 (471)
Q Consensus 127 ~~LLl~G~---lPt~~q~~~~~~~l~~~-~~lp~~v~~~i~ 163 (471)
.-|-+|-+ +-|.+|++++..||..| +.+|+.|.++++
T Consensus 29 ~RL~lYkria~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll~ 69 (173)
T 2qsr_A 29 HKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLE 69 (173)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCcHHHHHHHH
Confidence 34444443 46789999999999887 689999999886
No 33
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=24.17 E-value=16 Score=32.61 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=0.0
Q ss_pred eeecCCCHHHHHhh
Q 012073 98 IRFRGLSIPECQKL 111 (471)
Q Consensus 98 i~yRGy~I~eL~~~ 111 (471)
..|||++++||.+.
T Consensus 24 FtYrG~~ld~Ll~m 37 (154)
T 3iz6_R 24 YSYRGVDLDALLDM 37 (154)
T ss_dssp --------------
T ss_pred EEEecCcHHHHHhC
Confidence 48999999999987
No 34
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=23.18 E-value=1.8e+02 Score=29.25 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012073 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+... ...++.+ ..++|-..+++++++|.
T Consensus 145 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 208 (363)
T 2c6x_A 145 GHVENYYYMLTGEQPSEAKKKALETYMILATEHGMNASTFSARVTLS--TESDLVSAVTAALGTMK 208 (363)
T ss_dssp CSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh--cCccHHHHHHHHHHHcc
Confidence 4668999999999999999999998875443 34443 3344444 34689999999999984
Done!