BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012076
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXC|A Chain A, Seramidase Complexed With C2
pdb|2ZXC|B Chain B, Seramidase Complexed With C2
pdb|2ZWS|A Chain A, Crystal Structure Analysis Of Neutral Ceramidase From
Pseudomonas Aeruginosa
Length = 646
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 143/232 (61%), Gaps = 13/232 (5%)
Query: 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARY 59
MMGY+++EQ +GIH R AR F++ E G R+V+VN D M Q V +KV+ RLKA+Y
Sbjct: 23 MMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAKY 82
Query: 60 GDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLR 119
+Y E NV ++ HTH+GPGG+ Y +Y ++ LGF ++F+A+VDGI +S+ +A L+
Sbjct: 83 PGVYDENNVMLAATHTHSGPGGFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQ 142
Query: 120 PGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNW 179
PG +F GEL +AS +RS ++L NP + Y+ +D +M++L FVD G+ +W
Sbjct: 143 PGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDPQMSVLSFVDANGELAGAISW 200
Query: 180 FATHGTSMSRTNSLISGDNKGAAARFMED----------WFEQSNAGHSSAD 221
F H TSM+ N LIS DNKG A+ E F Q+NAG+ S +
Sbjct: 201 FPVHSTSMTNANHLISPDNKGYASYHWEHDVSRKSGFVAAFAQTNAGNLSPN 252
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 30/192 (15%)
Query: 278 AEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFE 337
+ K GFV+AF Q+N G++SPN+ + G GP + +EF+
Sbjct: 232 SRKSGFVAAFAQTNAGNLSPNL-----------------------NLKPGSGP-FDNEFD 267
Query: 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXX 397
+TR IG RQF KA ++ +A E++ G++D R ++DF++L + +G + T
Sbjct: 268 NTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFTDGQPRQLCTAAIG 327
Query: 398 XXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKK-PDKEQINCQYPKPILLDTGEM 456
++ NPF + LL P +E + CQ K IL DTG
Sbjct: 328 TSLAAGSTEDGPGPLGL----EEGNNPFLSALGGLLTGVPPQELVQCQAEKTILADTGN- 382
Query: 457 KQPYDWAVSPIP 468
K+PY W + +P
Sbjct: 383 KKPYPWTPTVLP 394
>pdb|3BAL|A Chain A, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|B Chain B, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|C Chain C, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|D Chain D, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
Length = 153
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 99 SFDALVDGIEKSVLQAHENLRPGSIFVNKGELL-------DASISRSPSAYLNNPASERG 151
S+ A+ + S +H + PG F+ KG++ S + +PS + + G
Sbjct: 46 SWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQEGGSTAYAPSYGFESSGALHG 105
Query: 152 KYKYNVDKEMTL-----LKFVDDQWGPVGSFNWFATHGTSMSRTN 191
K + V+ + + L F+DD + S W G ++ N
Sbjct: 106 KTFFPVESQFYMTFLGPLNFIDDNGKVIASIGWAEAQGAWLATKN 150
>pdb|4FHE|A Chain A, Spore Photoproduct Lyase C140a Mutant
pdb|4FHF|A Chain A, Spore Photoproduct Lyase C140a Mutant With Dinucleoside
Spore Photoproduct
Length = 368
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 417 QGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAVSPIPDWI 471
+G D + + L++ KP K I +YPK LD E K+ Y W I ++
Sbjct: 285 EGMDLSDLTFELIQHRFTKPAKRVIEQRYPK-TRLDLDETKRKYKWGRYGIGKYV 338
>pdb|4FHG|A Chain A, Spore Photoproduct Lyase C140s Mutant
Length = 368
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 417 QGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAVSPIPDWI 471
+G D + + L++ KP K I +YPK LD E K+ Y W I ++
Sbjct: 285 EGMDLSDLTFELIQHRFTKPAKRVIEQRYPK-TRLDLDETKRKYKWGRYGIGKYV 338
>pdb|4FHC|A Chain A, Spore Photoproduct Lyase
pdb|4FHD|A Chain A, Spore Photoproduct Lyase Complexed With Dinucleoside Spore
Photoproduct
Length = 368
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 417 QGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAVSPIPDWI 471
+G D + + L++ KP K I +YPK LD E K+ Y W I ++
Sbjct: 285 EGMDLSDLTFELIQHRFTKPAKRVIEQRYPK-TRLDLDETKRKYKWGRYGIGKYV 338
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 87 VYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISR 137
Y V + V + LV+ S+++A + +PG + N G L+DA +S+
Sbjct: 208 TYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSK 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,423,863
Number of Sequences: 62578
Number of extensions: 605326
Number of successful extensions: 1310
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 9
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)