Query 012076
Match_columns 471
No_of_seqs 207 out of 529
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232 Ceramidases [Signal tr 100.0 2E-138 5E-143 1067.6 29.7 426 1-471 50-484 (734)
2 PF04734 Ceramidase_alk: Neutr 100.0 3E-126 7E-131 1040.5 31.4 406 1-471 20-428 (674)
3 PTZ00487 ceramidase; Provision 100.0 9E-124 2E-128 1016.7 41.1 407 1-471 58-468 (715)
4 COG3356 Predicted membrane pro 97.7 0.00028 6E-09 76.8 12.0 117 1-131 413-533 (578)
5 PF09843 DUF2070: Predicted me 97.6 0.00064 1.4E-08 64.4 11.3 116 2-131 43-163 (179)
6 PF01282 Ribosomal_S24e: Ribos 58.6 21 0.00046 30.0 4.9 35 44-80 11-45 (84)
7 PTZ00397 macrophage migration 55.4 31 0.00068 30.0 5.7 50 23-75 49-103 (116)
8 PF14552 Tautomerase_2: Tautom 39.4 40 0.00086 28.2 3.6 45 30-76 26-75 (82)
9 TIGR03196 pucD xanthine dehydr 38.4 1.8E+02 0.0038 34.0 9.9 98 30-130 476-574 (768)
10 PRK12472 hypothetical protein; 31.8 1.7E+02 0.0038 32.4 7.8 94 106-208 308-402 (508)
11 PRK01178 rps24e 30S ribosomal 30.1 99 0.0021 27.0 4.7 47 32-80 17-63 (99)
12 COG3657 Uncharacterized protei 28.8 30 0.00066 30.0 1.3 27 288-333 36-62 (100)
13 PTZ00450 macrophage migration 28.3 1.3E+02 0.0029 26.5 5.3 49 23-74 49-102 (113)
14 PF09580 Spore_YhcN_YlaJ: Spor 26.9 1.7E+02 0.0037 27.0 6.1 47 18-73 91-141 (177)
15 cd06808 PLPDE_III Type III Pyr 26.9 3.8E+02 0.0083 24.7 8.6 40 34-80 109-154 (211)
16 PF05237 MoeZ_MoeB: MoeZ/MoeB 26.6 1.2E+02 0.0027 24.9 4.6 39 338-380 29-67 (84)
17 TIGR00151 ispF 2C-methyl-D-ery 22.5 1.3E+02 0.0027 28.4 4.2 42 33-76 88-134 (155)
18 PRK00084 ispF 2-C-methyl-D-ery 22.5 1.2E+02 0.0027 28.6 4.2 42 33-76 91-137 (159)
19 PF07485 DUF1529: Domain of Un 21.0 1.7E+02 0.0036 26.5 4.6 43 30-81 53-98 (123)
20 cd00554 MECDP_synthase MECDP_s 20.9 1.4E+02 0.0031 28.0 4.3 42 33-76 88-134 (153)
21 TIGR03194 4hydrxCoA_A 4-hydrox 20.8 3.5E+02 0.0075 31.5 8.2 95 33-130 456-551 (746)
No 1
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-138 Score=1067.64 Aligned_cols=426 Identities=74% Similarity=1.233 Sum_probs=415.8
Q ss_pred CCccCCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 012076 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (471)
Q Consensus 1 M~GYa~~~q~a~GIhdrL~ARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSGPg 80 (471)
|||||+..|.+.|||.||+|||||++++.++|++||++|++|+.+.++.+|.+||+++||++|+++||.||+||||+||+
T Consensus 50 mMGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPg 129 (734)
T KOG2232|consen 50 MMGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPG 129 (734)
T ss_pred eccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhhHHHHHHHHHHhhcccccccceeEecccccCCCc
Confidence 89999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhcccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhcccCCCCCCCe
Q 012076 81 GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKE 160 (471)
Q Consensus 81 g~~~~~l~~i~~~Gf~~~y~~~lvdgIv~AI~~A~~~l~Pa~i~~g~g~~~~~~~NRs~~ay~~NP~~er~~y~g~vD~~ 160 (471)
||++|++|.++++||.++.|+.+|++|.++|.+||+||+|++|.+++|++.++++||||++|++||++||++|+.++|++
T Consensus 130 Gylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSPssYL~NPa~ERsky~~d~DKe 209 (734)
T KOG2232|consen 130 GYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSPSSYLNNPAEERSKYEYDVDKE 209 (734)
T ss_pred ceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCChhHHhcChHhhhhcCccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCcEE---EEEeeeccccccC---CCCcccc---CChHHHHHHHHHHHhcccCCCCCCcccccccCCCcc
Q 012076 161 MTLLKFVDDQWGPVG---SFNWFATHGTSMS---RTNSLIS---GDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRR 231 (471)
Q Consensus 161 m~vL~f~~~dG~~ia---~L~nfA~HpTsl~---~~N~lIS---~D~~G~As~~lE~~~~~~~~~~~~~~~~~~~~~~~~ 231 (471)
|++|||+|..+.++| +..||++|+++|+ +.|+++| +|+.||++++||++.+.
T Consensus 210 mtllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~~~~------------------- 270 (734)
T KOG2232|consen 210 MTLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKASNP------------------- 270 (734)
T ss_pred eEEEEEEeccCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHhhCc-------------------
Confidence 999999999999999 5999999999999 8899999 99999999999998664
Q ss_pred ccccccccccchhHHHHHhhccCCCCCCchhhhhhHhhhhcccccccCCCCeEEEeecCCCCCCCCCCCCCcccCCCCCC
Q 012076 232 VSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPC 311 (471)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaFaqsn~GDvsPN~~g~~c~~~g~~c 311 (471)
.+.+||.+++.+|.+++|+. .+++.||+||||||+||||||++|+||+|||+||
T Consensus 271 ----------------------~~~pG~~v~~~~~~~~rvr~----~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~C 324 (734)
T KOG2232|consen 271 ----------------------NSMPGKSVTRSSSVARRVRN----ADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPC 324 (734)
T ss_pred ----------------------ccCCCcccccchhhhhhhhc----ccccchhhhhhhccCCCCCcccccchhhcCCCcc
Confidence 24578999999999999996 7889999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHhhcCcccccceeEEEEeeecCcceEeCcCCCCCCCcc
Q 012076 312 DFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETV 391 (471)
Q Consensus 312 ~~~~s~c~g~~~~c~~~gP~~~d~~~st~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~~~~~~~~ 391 (471)
|+++|||+|++++|.|+|||++||||||+|||+|||++|++||++++++|+|+|+|+|+||||++++|+++...+..+.+
T Consensus 325 d~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~v 404 (734)
T KOG2232|consen 325 DFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVV 404 (734)
T ss_pred ccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhhHHHhcCcccceeEeeccccceeEecCcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888899
Q ss_pred cCCcccccccccccCCCCCCCcCccCCCCCCCchHHHhhhccCCCCHhhhhccCCCCceecCCCCCCCCCcccccccccC
Q 012076 392 KTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAVSPIPDWI 471 (471)
Q Consensus 392 ~tc~~a~G~sfaaGt~DGpg~~~f~qg~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~w~p~i~~~q~ 471 (471)
||||||||||||||||||||+|+|+||++.|||||++||++|++|++||++||+||||||+||||++||+|+|+||++||
T Consensus 405 ktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~Qi 484 (734)
T KOG2232|consen 405 KTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQI 484 (734)
T ss_pred ccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=3e-126 Score=1040.46 Aligned_cols=406 Identities=60% Similarity=0.988 Sum_probs=287.0
Q ss_pred CCccCCCCCccceeecceEEEEEEEEeC-CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCC
Q 012076 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGP 79 (471)
Q Consensus 1 M~GYa~~~q~a~GIhdrL~ARAfVl~d~-~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSGP 79 (471)
||||+.+.|+++|||||||||||||++. +++|+|||++|++++++.++++|+++|++++|.+|+++||+|++|||||||
T Consensus 20 m~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g~~y~~~nViIsaTHTHSgP 99 (674)
T PF04734_consen 20 MMGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYGILYDEENVIISATHTHSGP 99 (674)
T ss_dssp EESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHSTTT-SGGGEEEEE--BSBEE
T ss_pred cCCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhcCCCChheEEEEeEecCCCC
Confidence 8999999999999999999999999942 579999999999999999999999999999998899999999999999999
Q ss_pred CCCccchhhhcccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhcccCCCCCCC
Q 012076 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (471)
Q Consensus 80 gg~~~~~l~~i~~~Gf~~~y~~~lvdgIv~AI~~A~~~l~Pa~i~~g~g~~~~~~~NRs~~ay~~NP~~er~~y~g~vD~ 159 (471)
+|+.++++++++..||+++|+++||++|++||++||++|+|++|.++++++.++++|||+.+|++||++||.+|++++||
T Consensus 100 gg~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ay~~NP~~er~~y~g~vD~ 179 (674)
T PF04734_consen 100 GGYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPSAYLRNPAEERARYDGPVDP 179 (674)
T ss_dssp ----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T--T-TT-TTS---
T ss_pred CccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCchhhhcCccccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCcEEEEEeeeccccccCCCCccccCChHHHHHHHHHHHhcccCCCCCCcccccccCCCcccccccccc
Q 012076 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (471)
Q Consensus 160 ~m~vL~f~~~dG~~ia~L~nfA~HpTsl~~~N~lIS~D~~G~As~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (471)
+|+||||++.||+++|+|+|||||||+|+++|++||+|||||++++||++++. .
T Consensus 180 ~~~vLrf~~~dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~----------------~---------- 233 (674)
T PF04734_consen 180 EMTVLRFRDADGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGG----------------D---------- 233 (674)
T ss_dssp EEEEEEEEETTS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT-----------------------------
T ss_pred ceeEEEEEeCCCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhcc----------------c----------
Confidence 99999999999999999999999999999999999999999999999999875 0
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhHhhhhcccccccCCCCeEEEeecCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 012076 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaFaqsn~GDvsPN~~g~~c~~~g~~c~~~~s~c~ 319 (471)
.++.++|||||+|+|+||||||+.||||+|||++||+++|||+
T Consensus 234 -------------------------------------~~~~~~fVaaFaq~n~GDvsPN~~g~~c~~~g~~c~~~~s~c~ 276 (674)
T PF04734_consen 234 -------------------------------------LAGKPPFVAAFAQGNAGDVSPNTLGPFCEDTGLPCDFEHSTCG 276 (674)
T ss_dssp ----------------------------------------STT-EEEEE-SS-TTEES-SS-------------------
T ss_pred -------------------------------------ccCCCCeEEEEccCCcccccccccccccccccccccccccccc
Confidence 1337899999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHhhcCcccccceeEEEEeeecCcceEeCcCCCCCCCcccCCccccc
Q 012076 320 GKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMG 399 (471)
Q Consensus 320 g~~~~c~~~gP~~~d~~~st~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~~~~~~~~~tc~~a~G 399 (471)
|+.++|+++||+ .||||||+|||+|||++|++||++++++|+|+||++|+||||++++|+. ..|++++.+||||||||
T Consensus 277 ~~~~~~~~~Gp~-~d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~~~v~~-~~~~~~~~~~tc~~a~G 354 (674)
T PF04734_consen 277 GKNELCHGRGPG-KDMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSNVTVDP-PFTGDGKTVRTCPAAMG 354 (674)
T ss_dssp ----SSSTSSST-S-HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-G-GGT-TSS-EE-----EE
T ss_pred ccccccCCCCCC-ccchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCCeEEcc-CCCCCCCcCcccccccc
Confidence 999999999999 5999999999999999999999999999999999999999999999996 44577899999999999
Q ss_pred ccccccCCCCCCCcCccCCCC--CCCchHHHhhhccCCCCHhhhhccCCCCceecCCCCCCCCCcccccccccC
Q 012076 400 FAFAAGTTDGPGAFDFTQGDD--KGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAVSPIPDWI 471 (471)
Q Consensus 400 ~sfaaGt~DGpg~~~f~qg~~--~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~w~p~i~~~q~ 471 (471)
||||||||||||.|+|+||++ .+||||++|++++++|++||++||+||||||+||+|++||||+|+|||+||
T Consensus 355 ~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~p~i~~~Qi 428 (674)
T PF04734_consen 355 YSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWVPNIVPIQI 428 (674)
T ss_dssp ----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS-SEEEEEE
T ss_pred cccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccCCceEEEEE
Confidence 999999999999999999998 789999999999999999999999999999999999999999999999996
No 3
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=8.6e-124 Score=1016.67 Aligned_cols=407 Identities=50% Similarity=0.897 Sum_probs=386.9
Q ss_pred CCccCCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhC-CCCCCCcEEEEeeccCCCC
Q 012076 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG-DLYTEKNVAISGIHTHAGP 79 (471)
Q Consensus 1 M~GYa~~~q~a~GIhdrL~ARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G-~~i~~~nVlIsATHTHSGP 79 (471)
||||+.+.|+++|||||||||||||+|.+++|+|||++|+++++++++++|+++|+++|| ++|+++||+|++|||||||
T Consensus 58 m~GYa~~~q~a~GvhdrLyARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~Gi~~y~~~NVllsATHTHSGP 137 (715)
T PTZ00487 58 MMGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFGPDLYTLDNVLLSGTHTHSGP 137 (715)
T ss_pred ccccccCCcCccceecceeEEEEEEEeCCCCEEEEEEEcccCCCHHHHHHHHHHHHHHhCcCcCChhhEEEEeeecCCCC
Confidence 899999999999999999999999975468999999999999999999999999999999 7889999999999999999
Q ss_pred CCCccchhhhcccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhcccCCCCCCC
Q 012076 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (471)
Q Consensus 80 gg~~~~~l~~i~~~Gf~~~y~~~lvdgIv~AI~~A~~~l~Pa~i~~g~g~~~~~~~NRs~~ay~~NP~~er~~y~g~vD~ 159 (471)
++|.++.+|+++++||+++|+++|+++|++||++||++|+|++|.++++++.++++|||+.+|++||++||.+|++++||
T Consensus 138 gg~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~aniNRs~~ay~~NP~~er~~y~g~vD~ 217 (715)
T PTZ00487 138 AGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNINRSPTAYDNNPEEEKAMYDGNVDK 217 (715)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccccCChhhhhcCchhhccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCcEEEEEeeeccccccCCCCccccCChHHHHHHHHHHHhcccCCCCCCcccccccCCCcccccccccc
Q 012076 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (471)
Q Consensus 160 ~m~vL~f~~~dG~~ia~L~nfA~HpTsl~~~N~lIS~D~~G~As~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (471)
+|+||||++.||+++|+|+|||||||+|+++|++||+|||||++++||+.+++. . ..
T Consensus 218 ~m~vLrf~~~dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~~---------------~-----~~--- 274 (715)
T PTZ00487 218 NMTVLRIEDMNGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNGN---------------D-----SF--- 274 (715)
T ss_pred ceEEEEEEcCCCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhccC---------------c-----cC---
Confidence 999999999999999999999999999999999999999999999999998761 1 01
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhHhhhhcccccccCCCCeEEEeecCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 012076 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (471)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaFaqsn~GDvsPN~~g~~c~~~g~~c~~~~s~c~ 319 (471)
++.++|||||+|+|+||||||++|+||+| |+|||+++|||+
T Consensus 275 --------------------------------------pg~~~FVAaF~qg~~GDvsPn~~g~~c~~-g~~c~~~~stc~ 315 (715)
T PTZ00487 275 --------------------------------------PGVGPFIAAFGQSNEGDVSPNTRGPTCRD-GIPCDYKTSTCN 315 (715)
T ss_pred --------------------------------------CCCCceeEEEccCCcccCCCCCCCCcccc-CCcccccccccC
Confidence 22456999999999999999999999999 999999999999
Q ss_pred CCCcccccCCCCCC-CcchhHHHHHHHHHHHHHHHHhhcCcccccceeEEEEeeecCcceEeCcCCCCCCCcccCCcccc
Q 012076 320 GKNEMCYGRGPGYP-DEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAM 398 (471)
Q Consensus 320 g~~~~c~~~gP~~~-d~~~st~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~~~~~~~~~tc~~a~ 398 (471)
||+|+|+|+||++. ||||||+|||+|||++|++||+++.++|+|+||+||+||||++++|..+++ +++..++||||||
T Consensus 316 g~~~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~~~dm~~~~v~~~~~-~~~~~~~tC~aa~ 394 (715)
T PTZ00487 316 GTTEECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHTWLNFTNVSVEPPYN-SGVQVATTCRGAM 394 (715)
T ss_pred CcccceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEEEEeccccEeccccC-CCCCcceeccccc
Confidence 99999999999977 799999999999999999999999999999999999999999999975443 5678999999999
Q ss_pred cccccccCCCCCCCcCccCCCCC--CCchHHHhhhccCCCCHhhhhccCCCCceecCCCCCCCCCcccccccccC
Q 012076 399 GFAFAAGTTDGPGAFDFTQGDDK--GNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAVSPIPDWI 471 (471)
Q Consensus 399 G~sfaaGt~DGpg~~~f~qg~~~--~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~w~p~i~~~q~ 471 (471)
|||||||||||||.|+|+||++. +||||+.+++++++|+++|++||+||||||++| +..||||+|+||||||
T Consensus 395 G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G-~~~p~~w~p~iv~iQi 468 (715)
T PTZ00487 395 GYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVG-MVEPIPWVPDVMPIQI 468 (715)
T ss_pred CcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCC-CCCCCCCcCceeeeEE
Confidence 99999999999999999999875 689999999999999999999999999999999 7789999999999997
No 4
>COG3356 Predicted membrane protein [Function unknown]
Probab=97.72 E-value=0.00028 Score=76.77 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=92.2
Q ss_pred CCccCCCC---CccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 012076 1 MMGYANME---QIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (471)
Q Consensus 1 M~GYa~~~---q~a~GIhdrL~ARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHS 77 (471)
++||+... +...|+ -+..+||++++. +++|.++|..|.=.+..+++++|++++.+ + .+++.+..|-||.
T Consensus 413 rvG~ar~~~~~~~~~Gl-g~~Gi~a~v~d~-g~~Rta~Vl~DsNNi~~~L~~~v~~~v~~-----l-v~~veV~TTDtH~ 484 (578)
T COG3356 413 RVGYARGKPLVDAEDGL-GPGGIRAAVVDT-GDTRTAYVLFDSNNITTELREEVRKAVRD-----L-VSEVEVVTTDTHY 484 (578)
T ss_pred cceeeccCCCCCCCCCc-CcCceEEEEEec-CCeEEEEEEEeCCCCcHHHHHHHHHHHHh-----h-hcEEEEEecCCce
Confidence 57898632 345554 468999999999 79999999999999999999999988887 3 5889999999998
Q ss_pred CCC-CCccchhhhcccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEec
Q 012076 78 GPG-GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (471)
Q Consensus 78 GPg-g~~~~~l~~i~~~Gf~~~y~~~lvdgIv~AI~~A~~~l~Pa~i~~g~g~~~ 131 (471)
-=+ .... | ...|.. +-...|.+.|+.++++|.++++|+++.+.+.++.
T Consensus 485 vn~~~~~~---~--~pvg~r-~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 485 VNGRLVLG---Y--NPVGSR-EDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred eccccccc---c--cccccc-ccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 654 2221 1 122333 3456899999999999999999999988888774
No 5
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=97.60 E-value=0.00064 Score=64.42 Aligned_cols=116 Identities=20% Similarity=0.151 Sum_probs=87.3
Q ss_pred CccCCCCCccceeec---ceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCC
Q 012076 2 MGYANMEQIASGIHF---RLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAG 78 (471)
Q Consensus 2 ~GYa~~~q~a~GIhd---rL~ARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSG 78 (471)
.||+... +.-+-|+ +.-.+|++++. +++|.++|.+|---+.+.++++|++++.+. .+.+.|..|.||+-
T Consensus 43 ~G~~~~~-~~~~~~~~lg~~gi~~~~v~~-~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~------~d~~ev~TTDtH~~ 114 (179)
T PF09843_consen 43 VGYAEAE-PFLGEHEGLGIGGISALVVEV-GGQRSALVLADSNNMEPGLREKIREALGDV------VDEVEVMTTDTHFV 114 (179)
T ss_pred cceEecc-CCCCCCCCcCccccEEEEEEe-CCcEEEEEEEECCCCCHHHHHHHHHHHhhh------cceeEEecCcccEE
Confidence 4666432 2344443 45689999999 799999999999999999999999888773 47799999999996
Q ss_pred CCCCc--cchhhhcccccchhhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEec
Q 012076 79 PGGYL--QYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (471)
Q Consensus 79 Pgg~~--~~~l~~i~~~Gf~~~y~~~lvdgIv~AI~~A~~~l~Pa~i~~g~g~~~ 131 (471)
-+-.. .|+.+.. . --.+.+.+.+.+++++|.++++|+++.+.+..++
T Consensus 115 ~~~~~g~~y~~vG~-----~-~~~~~i~~~~~~~~~~A~~~l~~v~~~~~~~~~~ 163 (179)
T PF09843_consen 115 NGESGGNGYWPVGP-----L-IPPREIIESRREAVSEAERDLEPVEVGYKEVYVK 163 (179)
T ss_pred ccEECCccceeccc-----c-CCHHHHHHHHHHHHHHHHhcccccEEEEEEEEEE
Confidence 54222 1222211 0 0345788889999999999999999999998863
No 6
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=58.62 E-value=21 Score=29.96 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 012076 44 SQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (471)
Q Consensus 44 ~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSGPg 80 (471)
+..-+.+|+++|++.|+ .+.++|+|-.-+||-|=+
T Consensus 11 ~Tpsr~ei~~klA~~~~--~~~~~ivv~~~~t~fG~~ 45 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLN--VDPDLIVVFGIKTEFGGG 45 (84)
T ss_dssp SS--HHHHHHHHHHHHT--STGCCEEEEEEEESSSSS
T ss_pred CCCCHHHHHHHHHHHhC--CCCCeEEEeccEecCCCc
Confidence 34458999999999999 899999999999999886
No 7
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=55.42 E-value=31 Score=29.96 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=37.4
Q ss_pred EEEEeCCCCEEEEEEeccCc-ccH----HHHHHHHHHHHHHhCCCCCCCcEEEEeecc
Q 012076 23 FIVAEPQGNRVVFVNLDACM-ASQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (471)
Q Consensus 23 fVl~d~~~~rvv~Vs~Dl~~-i~~----~v~~~V~~~L~~~~G~~i~~~nVlIsATHT 75 (471)
+++.. ....+++|.+.+++ ... .+..+|-+.|++.+| +++++|+|.-+=.
T Consensus 49 m~f~g-~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lg--i~~~rv~I~f~~~ 103 (116)
T PTZ00397 49 MRFGG-SHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLK--VKSERVYIEFKDC 103 (116)
T ss_pred EEECC-CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 44443 46699999999665 443 467778888889999 9999999987543
No 8
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=39.43 E-value=40 Score=28.18 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=29.7
Q ss_pred CCEEEEEEeccC-ccc----HHHHHHHHHHHHHHhCCCCCCCcEEEEeeccC
Q 012076 30 GNRVVFVNLDAC-MAS----QIVKIKVIERLKARYGDLYTEKNVAISGIHTH 76 (471)
Q Consensus 30 ~~rvv~Vs~Dl~-~i~----~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTH 76 (471)
...+++|.+.+. +=+ +.+...+.++|+++.| |++++|+|+-+-++
T Consensus 26 s~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g--i~p~Dv~I~l~e~~ 75 (82)
T PF14552_consen 26 SDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG--IRPEDVMIVLVENP 75 (82)
T ss_dssp -TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEEE-
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC--CCHHHEEEEEEECC
Confidence 467888888887 222 3456778888888899 99999999988775
No 9
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=38.42 E-value=1.8e+02 Score=33.96 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=60.6
Q ss_pred CCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCCCCccchhhhccc-ccchhhHHHHHHHHHH
Q 012076 30 GNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTS-LGFVRQSFDALVDGIE 108 (471)
Q Consensus 30 ~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSGPgg~~~~~l~~i~~-~Gf~~~y~~~lvdgIv 108 (471)
++-.+-|.+-..-+.|.....+.+..++.+| ++.++|-|...-|...|-+...+---.... ......--+.|.+++.
T Consensus 476 Gsv~v~v~~g~~d~GQG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl~ 553 (768)
T TIGR03196 476 GTVKIRAHFACAECGQGFLAAAEQIAMEELG--CAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQLK 553 (768)
T ss_pred CCeEEEEEECCCCcCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Confidence 5434556666777778888889999999999 999999999999988885332111000111 1134455566777776
Q ss_pred HHHHHHHhcCCceEEEEEEEEe
Q 012076 109 KSVLQAHENLRPGSIFVNKGEL 130 (471)
Q Consensus 109 ~AI~~A~~~l~Pa~i~~g~g~~ 130 (471)
+.+.+.+ ...|..+.+..+.+
T Consensus 554 ~~aa~~l-~~~~~~~~~~~g~~ 574 (768)
T TIGR03196 554 ARAAETA-GLPAEVVEAPAENL 574 (768)
T ss_pred HHHHHHh-CCChhhEEEeCCee
Confidence 5543322 34444455554444
No 10
>PRK12472 hypothetical protein; Provisional
Probab=31.78 E-value=1.7e+02 Score=32.36 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhcccCCCCCCCeeEE-EEEEeCCCCcEEEEEeeeccc
Q 012076 106 GIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTL-LKFVDDQWGPVGSFNWFATHG 184 (471)
Q Consensus 106 gIv~AI~~A~~~l~Pa~i~~g~g~~~~~~~NRs~~ay~~NP~~er~~y~g~vD~~m~v-L~f~~~dG~~ia~L~nfA~Hp 184 (471)
.++++...|.-.++|++|++..-.- .+++-|+-. -|.-+. ..-.|+.+-+ +.+++. ++|||.-++-|+-.
T Consensus 308 ~~~~~a~~a~l~~~pvsi~isr~tq-~lyvr~~t~----~~~~~~---~~~~~~~~e~pvti~~~-~~p~gthvfta~~~ 378 (508)
T PRK12472 308 ETAKAATDAKLALEPVSIYISRATQ-KLYVRRNTH----KPAPDG---GEVFDASIEVPVTIRDP-DRPIGTHVFTAMAR 378 (508)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcccc-eEEEecccC----CCCCCC---CccccceeeeeeEecCC-CCCcceEEEEEEcc
Confidence 3455666677788999999988776 677766621 121110 1235776654 667774 99999999999988
Q ss_pred cccCCCCccccCChHHHHHHHHHH
Q 012076 185 TSMSRTNSLISGDNKGAAARFMED 208 (471)
Q Consensus 185 Tsl~~~N~lIS~D~~G~As~~lE~ 208 (471)
+.-+-.-..+|-|+.--|...|.+
T Consensus 379 ~~~~l~w~~vt~~~~~~a~~aldr 402 (508)
T PRK12472 379 NDAGLRWSAVTIDDGDDAKAALDR 402 (508)
T ss_pred CCCccceEEEeccchhhHHHhhhc
Confidence 765545567777777666555543
No 11
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=30.10 E-value=99 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=36.4
Q ss_pred EEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 012076 32 RVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (471)
Q Consensus 32 rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSGPg 80 (471)
|-+.+.+---+-...-+.+|+++|++.|+ -+.++|+|-.-.|+-|-+
T Consensus 17 ke~~~~v~h~g~~tpsr~eirekLa~~~~--~~~~~vvv~~~~t~fG~g 63 (99)
T PRK01178 17 REIKFEVYHEGSATPSRKDVRKKLAAMLN--ADKELVVVRKIKTEYGMG 63 (99)
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHC--cCCCEEEEEccCccCCCc
Confidence 33444444444334458999999999999 899999999999999986
No 12
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.76 E-value=30 Score=30.05 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=21.0
Q ss_pred ecCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 012076 288 CQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYP 333 (471)
Q Consensus 288 aqsn~GDvsPN~~g~~c~~~g~~c~~~~s~c~g~~~~c~~~gP~~~ 333 (471)
+++|.||+.|==.| -.|+.+-.||||.
T Consensus 36 ~~GN~GD~kpvgeG-------------------V~ELRId~GpGyR 62 (100)
T COG3657 36 ALGNFGDVKPVGEG-------------------VSELRIDHGPGYR 62 (100)
T ss_pred hcCCCcCccccccc-------------------hhhheeccCCceE
Confidence 68899999985443 4578888999973
No 13
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=28.35 E-value=1.3e+02 Score=26.46 Aligned_cols=49 Identities=6% Similarity=0.148 Sum_probs=37.4
Q ss_pred EEEEeCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q 012076 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIH 74 (471)
Q Consensus 23 fVl~d~~~~rvv~Vs~Dl~~i-~~----~v~~~V~~~L~~~~G~~i~~~nVlIsATH 74 (471)
+.+.. .....+||.+-.++. .. .+...+-+.|++++| |+.++|+|.-.=
T Consensus 49 m~fgG-s~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~Lg--Ip~dRiYI~f~d 102 (113)
T PTZ00450 49 MSFQG-STAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECG--IPAERIYVFYYS 102 (113)
T ss_pred EEEcC-CCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcC--CCcccEEEEEEc
Confidence 34443 456899999988874 33 456777788899999 999999998774
No 14
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=26.86 E-value=1.7e+02 Score=27.04 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=31.9
Q ss_pred eEEEEEEEEeCCCCEEEEEEeccC---cccHHHHHHHHHHHHHHhCCCCCC-CcEEEEee
Q 012076 18 LRARTFIVAEPQGNRVVFVNLDAC---MASQIVKIKVIERLKARYGDLYTE-KNVAISGI 73 (471)
Q Consensus 18 L~ARAfVl~d~~~~rvv~Vs~Dl~---~i~~~v~~~V~~~L~~~~G~~i~~-~nVlIsAT 73 (471)
-.|+++|.++ -+||.+++- .....+..+|+++|++. ++. .+|.||+=
T Consensus 91 ~~A~vvv~~~-----~a~Vav~~~~~~~~~~~i~~~V~~~v~~~----~p~~~~V~Vs~D 141 (177)
T PF09580_consen 91 EDATVVVTDD-----NAYVAVDLDFNRFNTKKIKKKVEKAVKSA----DPRIYNVYVSTD 141 (177)
T ss_pred eEEEEEEECC-----EEEEEEEecccccchhHHHHHHHHHHHHh----CCCccEEEEEcC
Confidence 3577787765 377777776 55556677777777664 345 78999863
No 15
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=26.85 E-value=3.8e+02 Score=24.72 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=26.7
Q ss_pred EEEEeccC------cccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 012076 34 VFVNLDAC------MASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (471)
Q Consensus 34 v~Vs~Dl~------~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSGPg 80 (471)
++|-+|.. ++..+-..++.+++++ .+|+-|.+-|||.|..
T Consensus 109 v~lrv~~g~~~~R~G~~~~e~~~~~~~i~~-------~~~l~l~Gl~~H~~~~ 154 (211)
T cd06808 109 VLLRIDTGDENGKFGVRPEELKALLERAKE-------LPHLRLVGLHTHFGSA 154 (211)
T ss_pred EEEEEcCCCCCCCCCCCHHHHHHHHHHHHh-------CCCCcEEEEEEecCCC
Confidence 56777776 5555444455555544 2378999999999876
No 16
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=26.65 E-value=1.2e+02 Score=24.88 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCcccccceeEEEEeeecCcceEe
Q 012076 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVT 380 (471)
Q Consensus 338 st~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~ 380 (471)
-+-|||.-|...|.+++...++.+.| +..++|.-+.+++
T Consensus 29 ~~giigslqA~eaik~l~g~~~~l~~----~l~~~D~~~~~~~ 67 (84)
T PF05237_consen 29 VVGIIGSLQANEAIKLLLGIGEPLSG----KLLTIDLLNMSFR 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHCT-S---BT----EEEEEETTTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHhcCCchhh----heeeEECCCCeEE
Confidence 56789999999999999877777777 4477888776665
No 17
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=22.55 E-value=1.3e+02 Score=28.42 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=33.4
Q ss_pred EEEEEeccCcccH-----HHHHHHHHHHHHHhCCCCCCCcEEEEeeccC
Q 012076 33 VVFVNLDACMASQ-----IVKIKVIERLKARYGDLYTEKNVAISGIHTH 76 (471)
Q Consensus 33 vv~Vs~Dl~~i~~-----~v~~~V~~~L~~~~G~~i~~~nVlIsATHTH 76 (471)
+.++++|+..+.+ ..+.++++.|++.++ ++.++|-|.||-|=
T Consensus 88 ~~i~niD~tii~e~PKi~p~~~~m~~~la~~L~--~~~~~V~iKatT~E 134 (155)
T TIGR00151 88 YRIGNVDITIIAQRPKLLPHIPAMRENIAELLG--IPLDSVNVKATTTE 134 (155)
T ss_pred CEEEEEEEEEEcCCCcchHHHHHHHHHHHHHhC--CCcceEEEEEecCC
Confidence 4566666666554 368999999999999 99999999999653
No 18
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=22.49 E-value=1.2e+02 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.4
Q ss_pred EEEEEeccCcccH-----HHHHHHHHHHHHHhCCCCCCCcEEEEeeccC
Q 012076 33 VVFVNLDACMASQ-----IVKIKVIERLKARYGDLYTEKNVAISGIHTH 76 (471)
Q Consensus 33 vv~Vs~Dl~~i~~-----~v~~~V~~~L~~~~G~~i~~~nVlIsATHTH 76 (471)
+-++++|+..+.+ ..+.++++.|++.++ ++.++|-|.||-|=
T Consensus 91 ~~i~niD~tii~e~PKi~p~~~~m~~~la~~L~--i~~~~V~iKatT~E 137 (159)
T PRK00084 91 YRIGNVDITIIAQRPKMAPHIEEMRANIAEDLG--IPLDDVNVKATTTE 137 (159)
T ss_pred CEEEEEEEEEEcCCCcchHHHHHHHHHHHHHhC--CCcceEEEEEecCC
Confidence 4566666665544 368999999999999 99999999998653
No 19
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.98 E-value=1.7e+02 Score=26.46 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=30.5
Q ss_pred CCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC---CCCC
Q 012076 30 GNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA---GPGG 81 (471)
Q Consensus 30 ~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHS---GPgg 81 (471)
+.--+++.-|+.+...++ +.|.+.|.+ -| |.|+|.|+|- -|.-
T Consensus 53 ~~G~A~~~Gd~vll~~EV-~pvi~aL~~-~G-------I~vtAlHNH~l~e~Prl 98 (123)
T PF07485_consen 53 GDGKAMVMGDFVLLEDEV-NPVISALRK-NG-------IEVTALHNHWLFEQPRL 98 (123)
T ss_pred CCCcEEEeecEEecHHHH-HHHHHHHHH-CC-------ceEEEEecccccCCCCE
Confidence 333577888988887664 556666665 45 8999999997 5553
No 20
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=20.86 E-value=1.4e+02 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=33.8
Q ss_pred EEEEEeccCcccH-----HHHHHHHHHHHHHhCCCCCCCcEEEEeeccC
Q 012076 33 VVFVNLDACMASQ-----IVKIKVIERLKARYGDLYTEKNVAISGIHTH 76 (471)
Q Consensus 33 vv~Vs~Dl~~i~~-----~v~~~V~~~L~~~~G~~i~~~nVlIsATHTH 76 (471)
+.++++|+..+.+ ..+.++++.|++.++ ++.++|-|.||-+=
T Consensus 88 ~~i~niD~tii~e~PKi~p~~~~m~~~ls~~L~--~~~~~V~iKatT~E 134 (153)
T cd00554 88 YEIVNIDITIIAERPKISPYREAMRANLAELLG--IPPSRVNIKATTTE 134 (153)
T ss_pred CEEEEEEEEEEecCCcchHHHHHHHHHHHHHhC--CCCceEEEEEecCC
Confidence 4566667666554 468999999999999 99999999998653
No 21
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=20.85 E-value=3.5e+02 Score=31.47 Aligned_cols=95 Identities=8% Similarity=-0.030 Sum_probs=62.5
Q ss_pred EEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCCCCccchhhhc-ccccchhhHHHHHHHHHHHHH
Q 012076 33 VVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIV-TSLGFVRQSFDALVDGIEKSV 111 (471)
Q Consensus 33 vv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSGPgg~~~~~l~~i-~~~Gf~~~y~~~lvdgIv~AI 111 (471)
-+.|.+-..-+.|.....+.+.+++.+| ++.++|-|...=|...|.++..+---.. ........-.+.|.++|.+..
T Consensus 456 ~v~v~~g~~e~GqG~~T~~~qiaAe~LG--ip~d~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~~~a 533 (746)
T TIGR03194 456 GITLLTGAADIGQGSSTIASQVAAEVLG--VRLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDAAEELKGVLVAAA 533 (746)
T ss_pred cEEEEEcCCCCCCCHHHHHHHHHHHHhC--CCHHhEEEEccCCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888889999999999 9999999999999998854432110000 011134455566667776655
Q ss_pred HHHHhcCCceEEEEEEEEe
Q 012076 112 LQAHENLRPGSIFVNKGEL 130 (471)
Q Consensus 112 ~~A~~~l~Pa~i~~g~g~~ 130 (471)
.+.+ +..|-.+.+..|.+
T Consensus 534 a~~l-~~~~~~l~~~~g~v 551 (746)
T TIGR03194 534 AKKL-DAREEDIECAGEMF 551 (746)
T ss_pred HHHh-CCCHHHEEEECCEE
Confidence 4443 44555677766666
Done!