Query 012077
Match_columns 471
No_of_seqs 242 out of 431
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03182 xyloglucan 6-xylosylt 100.0 1E-147 3E-152 1129.7 34.3 428 1-452 1-428 (429)
2 PLN03181 glycosyltransferase; 100.0 6E-119 1E-123 919.3 31.1 321 110-432 89-446 (453)
3 KOG4748 Subunit of Golgi manno 100.0 4E-73 8.7E-78 575.8 9.2 333 18-422 1-364 (364)
4 PF05637 Glyco_transf_34: gala 100.0 8.2E-51 1.8E-55 395.2 4.4 210 150-387 2-236 (239)
5 PF03314 DUF273: Protein of un 99.6 1.6E-16 3.5E-21 152.7 6.1 124 181-330 2-127 (222)
6 KOG4748 Subunit of Golgi manno 98.6 1.8E-08 3.9E-13 104.2 2.9 74 263-338 214-288 (364)
7 PF03407 Nucleotid_trans: Nucl 98.5 4.8E-07 1E-11 85.3 9.0 164 181-384 16-203 (212)
8 PF01501 Glyco_transf_8: Glyco 97.3 0.00077 1.7E-08 63.2 7.8 107 203-329 79-203 (250)
9 cd06914 GT8_GNT1 GNT1 is a fun 97.0 0.011 2.4E-07 60.0 12.9 155 148-341 28-183 (278)
10 cd02537 GT8_Glycogenin Glycoge 96.8 0.0027 6E-08 61.9 6.9 92 204-330 77-169 (240)
11 cd04194 GT8_A4GalT_like A4GalT 96.7 0.0053 1.1E-07 59.3 7.9 108 203-330 76-198 (248)
12 cd00505 Glyco_transf_8 Members 95.4 0.027 5.8E-07 54.8 5.6 107 205-331 78-200 (246)
13 cd06429 GT8_like_1 GT8_like_1 95.2 0.05 1.1E-06 54.4 6.9 155 202-399 93-253 (257)
14 PLN00176 galactinol synthase 95.0 0.079 1.7E-06 55.2 8.1 42 267-329 182-224 (333)
15 PRK15171 lipopolysaccharide 1, 94.9 0.094 2E-06 54.2 8.0 133 181-329 74-226 (334)
16 cd06430 GT8_like_2 GT8_like_2 94.3 0.17 3.6E-06 52.3 8.3 136 182-332 54-216 (304)
17 cd06431 GT8_LARGE_C LARGE cata 93.4 0.15 3.2E-06 51.7 5.9 114 205-331 78-208 (280)
18 COG1442 RfaJ Lipopolysaccharid 92.5 0.45 9.8E-06 49.5 8.0 111 203-330 78-201 (325)
19 PLN02769 Probable galacturonos 90.3 1.5 3.3E-05 49.4 9.6 170 202-415 431-625 (629)
20 PLN02718 Probable galacturonos 87.8 1.1 2.5E-05 50.1 6.5 173 203-417 398-600 (603)
21 PLN02829 Probable galacturonos 86.2 2.5 5.5E-05 47.6 8.1 160 202-402 436-625 (639)
22 PLN02742 Probable galacturonos 84.6 2.7 5.8E-05 46.6 7.3 160 203-401 333-520 (534)
23 PLN02523 galacturonosyltransfe 80.4 4.3 9.3E-05 45.3 6.9 35 203-237 357-392 (559)
24 PLN02910 polygalacturonate 4-a 79.8 3.9 8.4E-05 46.2 6.4 169 204-417 456-654 (657)
25 PF03452 Anp1: Anp1; InterPro 77.6 1.2 2.7E-05 45.4 1.6 20 220-239 141-160 (269)
26 PLN02867 Probable galacturonos 50.8 43 0.00094 37.5 7.0 35 202-236 324-359 (535)
27 cd06432 GT8_HUGT1_C_like The C 49.4 45 0.00098 33.2 6.4 18 220-237 93-111 (248)
28 TIGR01606 holin_BlyA holin, Bl 47.4 7.4 0.00016 31.6 0.4 27 14-40 9-35 (63)
29 cd04190 Chitin_synth_C C-termi 42.0 80 0.0017 30.4 6.7 76 154-236 1-88 (244)
30 PF13704 Glyco_tranf_2_4: Glyc 40.2 39 0.00085 27.7 3.7 29 211-239 61-89 (97)
31 PF13712 Glyco_tranf_2_5: Glyc 37.8 46 0.001 32.4 4.3 72 153-239 1-72 (217)
32 cd02520 Glucosylceramide_synth 37.4 1.8E+02 0.0039 26.6 8.0 34 204-239 70-103 (196)
33 PF05102 Holin_BlyA: holin, Bl 36.8 14 0.00031 30.0 0.6 26 14-39 9-34 (61)
34 TIGR03124 ctirate_citX holo-AC 33.1 2.7E+02 0.0059 26.5 8.6 53 132-193 16-69 (165)
35 PF13506 Glyco_transf_21: Glyc 31.4 51 0.0011 30.9 3.4 32 207-239 17-48 (175)
36 cd04191 Glucan_BSP_ModH Glucan 29.9 3.4E+02 0.0073 27.0 9.0 28 208-235 81-109 (254)
37 PF01539 HCV_env: Hepatitis C 29.3 18 0.00039 35.3 0.0 31 376-408 27-57 (190)
38 PF01762 Galactosyl_T: Galacto 28.1 2.4E+02 0.0053 26.3 7.4 92 130-237 4-96 (195)
39 cd02515 Glyco_transf_6 Glycosy 25.2 3.9E+02 0.0085 27.7 8.6 78 150-237 33-139 (271)
40 cd06435 CESA_NdvC_like NdvC_li 24.8 4.1E+02 0.0089 24.6 8.2 31 208-239 70-101 (236)
41 PF13641 Glyco_tranf_2_3: Glyc 24.4 61 0.0013 29.9 2.6 34 204-239 70-103 (228)
42 KOG2287 Galactosyltransferases 23.4 2.4E+02 0.0053 29.5 7.0 92 131-239 113-205 (349)
43 PRK12419 riboflavin synthase s 22.6 3.9E+02 0.0084 25.5 7.5 59 149-218 9-67 (158)
44 PLN02870 Probable galacturonos 22.2 68 0.0015 36.0 2.8 36 202-237 322-358 (533)
45 PF11201 DUF2982: Protein of u 22.2 1.5E+02 0.0033 28.1 4.7 96 113-217 37-151 (152)
46 PF07423 DUF1510: Protein of u 21.8 2.3E+02 0.005 28.3 6.1 35 9-46 7-41 (217)
47 PLN03153 hypothetical protein; 21.3 76 0.0016 35.6 2.9 24 212-235 200-224 (537)
48 cd04186 GT_2_like_c Subfamily 20.7 1.1E+02 0.0025 25.9 3.4 31 206-238 60-90 (166)
49 cd04192 GT_2_like_e Subfamily 20.3 1E+02 0.0022 28.1 3.1 34 204-239 66-99 (229)
No 1
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=100.00 E-value=1.2e-147 Score=1129.71 Aligned_cols=428 Identities=67% Similarity=1.228 Sum_probs=406.6
Q ss_pred CccccccchhHHHHHHhhccceehhhhhhHHHhhhccccccCCCCCCcccHHHHHhhcccCCCCCCCCcccchhhcccCC
Q 012077 1 MIERCLGAQRSRKFHRALRQCKVTALCLVLTVVVLRGIIGAGEFGTPEKDFYEIRNRLYFPSRKRGGDPHRVLEERRTTS 80 (471)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~t~~c~~~t~~vlrgt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (471)
+.+++++.+|+|++||++||+||||||||||||||||| |+|+||++++|+.+++++....++ -++++|+|+|++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~t~lc~~~tilvlrgt-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (429)
T PLN03182 1 MLQRCLGTPRGRQLQRTLNNLKITILCGFVTILVLRGT-IAGKFGTPEQDFVELRAHFLSARR--IEEPSRVLAEIRFDD 77 (429)
T ss_pred CccccccchhhhhHHHHHhccchhhhhhhheeeEeccc-cccccCCCCcchhhhhhhhccccc--cccccccchhccccC
Confidence 46789999999999999999999999999999999999 999999999999999999765333 378999999987222
Q ss_pred CCCccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhCCCCCCCCCCCCcEEEEEeeC
Q 012077 81 SSFATHDRNHNKNNYDEFNVKMFMEDNGEDDEKPDPNEPYSRGPKISNWDAQRAQWLNENPDFANFINKKPRVLLVTGSS 160 (471)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~wd~~r~~wl~~~p~~~~~~~g~prIvIVT~sd 160 (471)
+... .++.+++++||++||||||+|+|||+||++||++||+|++...|+|||+|||+++
T Consensus 78 ~~~~---------------------~~~~~~~~~~~~~~y~lg~~i~~wd~~R~~wl~~~p~~~~~~~g~prVviVT~sd 136 (429)
T PLN03182 78 DLTD---------------------LDEVEEERWDPNTPYTLGPKISDWDEQRRRWLRKNPGFPSFVNGKPRVLLVTGSQ 136 (429)
T ss_pred cccc---------------------ccccchhhcCCCCCcccCCCCCCHHHHHHHHHHhCCCCCCccCCCCCEEEEeCCC
Confidence 2211 2455778999999999999999999999999999999998667999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHhCCcEEEeccccCcccccccchHHHHHHHHhcCCCccEEEEeeCCceeecCCCC
Q 012077 161 PKACENPVGDHYLLKSIKNKIDYCRVHGLEIFYSTALLDAEMAGFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTFE 240 (471)
Q Consensus 161 ~~~c~~~~gd~yL~ksikNk~~YAr~HGY~~~~~~~~ld~~~~~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~s 240 (471)
+++|++++|++||+++++||++||++|||+++|+++.|+++++++|+|+++||++|.+||++|||||||+||+||||+++
T Consensus 137 p~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfe 216 (429)
T PLN03182 137 PKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFE 216 (429)
T ss_pred CCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhHHHHHHHHHHHCCCceEEEEecCCceeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCeeecCccceeeeCCCCccccccceeEeccHHHHHHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCc
Q 012077 241 VPWERYKDYNLVMHGWNEMVYDQKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADD 320 (471)
Q Consensus 241 LpLe~~~d~nLvI~g~~dlI~tqddw~GLNtGsFLIRNs~WS~~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~D 320 (471)
||+++|+++|+|||||.++++.+++|+|||+|||||||||||++|||+|++|+|++|+|++||++|+++|+++|.|+++|
T Consensus 217 lPlery~~~NlVihg~~~~l~~~kdW~GLNtGsFLIRNcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDD 296 (429)
T PLN03182 217 IPLEKYEGYNLVIHGWDELVYDQKSWIGLNTGSFLIRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADD 296 (429)
T ss_pred CCHhHcCCcCeeeccchhhheeccccCccceeeEEEEcCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCccc
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccccccCeeeeecchhhchhhhHhhhhHHHHHHhcCCCCCCCCCCeEEEcccCccCCCCCCChHHHHHHH
Q 012077 321 QSAMVYSLATERDKWGDKVYLESEYYLHVNWAILVDRYEEMIEKYRPGLGDHRWPLVTHFVGCKPCAKFGDNLAERCLRQ 400 (471)
Q Consensus 321 QsAL~yLL~~q~~~w~~kV~len~y~l~gyW~~iv~r~e~~~~~y~pG~GD~r~pFVtHFaGC~~c~~~~~y~~~~C~~~ 400 (471)
||||+|||.+++++|++|||+|++|||||||.+||++||++|++||||.||+||||||||+|||||+++++|++++|+++
T Consensus 297 QSAlvyLl~~~~~~w~~kv~le~~y~l~Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~GckpC~~~~~y~~~~C~~~ 376 (429)
T PLN03182 297 QSALVYLLLTQRERWGDKVYLENSYYLHGYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVGCKPCGGYGDYPVERCLKQ 376 (429)
T ss_pred HHHHHHHHHhcchhhccceEEeecceeccccHHHHHHHHHHHHhcCCCCCCcccceeEeeccceecCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccchhhHHHhhccccCCCCCcCceecccccCCcccccccccCCCccc
Q 012077 401 MDRAFTFGDNQILRTYGFTHKSLASGRVKRVRNETRNPLEVKDKVRLLSPPY 452 (471)
Q Consensus 401 M~ra~nfadnqvl~~yg~~h~~l~~~~v~~~~~~~~~pl~~~~~~~~~~~~~ 452 (471)
|+|||||||||||++|||+|++|+|.+|+||||||++||++++++++.++.+
T Consensus 377 m~ra~nFaDnQvL~~yGf~H~~l~~~~v~~~~~~~~~pl~~~~~~~~~~~~~ 428 (429)
T PLN03182 377 MERAFNFADNQVLELYGFRHKSLASAEVKRVRNDTSNPLEAKDELGLRHPAF 428 (429)
T ss_pred HHHHhccchHHHHHHhCccccccCccceeehhccCCCcchhhhhhcccCCCC
Confidence 9999999999999999999999999999999999999999999988766653
No 2
>PLN03181 glycosyltransferase; Provisional
Probab=100.00 E-value=5.6e-119 Score=919.35 Aligned_cols=321 Identities=50% Similarity=1.002 Sum_probs=309.9
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 012077 110 DDEKPDPNEPYSRGPKISNWDAQRAQWLNENPDFANFINKKPRVLLVTGSSPKACENPVGDHYLLKSIKNKIDYCRVHGL 189 (471)
Q Consensus 110 ~~~~~~~~~~y~~~~~i~~wd~~r~~wl~~~p~~~~~~~g~prIvIVT~sd~~~c~~~~gd~yL~ksikNk~~YAr~HGY 189 (471)
..-++||+++|||||+|+|||+||++||++||+|+. .++|+|+|||+++|++|++++||+||+++++||++||++|||
T Consensus 89 ~~f~~dp~~~ytl~~~i~~wD~kR~~Wl~~~p~~~~--~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY 166 (453)
T PLN03181 89 PTFYDDPDLSYSIEKPIKNWDEKRAEWLKLHPSFAP--GAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGY 166 (453)
T ss_pred cccccCCCCceecCCCcCCHHHHHHHHHHhCCCCCC--CCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCC
Confidence 445788999999999999999999999999999985 588999999999999999999999999999999999999999
Q ss_pred cEEEeccccCcccccccchHHHHHHHHhcCCCccEEEEeeCCceeecCCCCCCccccCCCCeeecCccceeeeCCCCccc
Q 012077 190 EIFYSTALLDAEMAGFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTFEVPWERYKDYNLVMHGWNEMVYDQKNWIGL 269 (471)
Q Consensus 190 ~~~~~~~~ld~~~~~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~sLpLe~~~d~nLvI~g~~dlI~tqddw~GL 269 (471)
+++|++..++++++++|+|+++||++|.+||++|||||||+||+||||+++||+++|+++||++||++++++++++|+||
T Consensus 167 ~lf~~~a~Ld~~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~~vy~~qdw~Gl 246 (453)
T PLN03181 167 DIFYNNALLHPKMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPKLIYEKRSWTAL 246 (453)
T ss_pred cEEEeccccCccCchhhhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhhcCCccccccCCccccccccccccc
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred cccceeEeccHHHHHHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhccccccCeeeeecchhhch
Q 012077 270 NTGSFLLRNCQWSLDILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATERDKWGDKVYLESEYYLHV 349 (471)
Q Consensus 270 NtGsFLIRNs~WS~~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~~kV~len~y~l~g 349 (471)
|+|||||||||||++|||+|+.|+|++|+|++||++|+++|++++.+++||||||+|||.+++++|++|||+|++|||||
T Consensus 247 N~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~~~~w~~k~ylE~~yy~~G 326 (453)
T PLN03181 247 NAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKHKEKWGDKIYLEGEYYFEG 326 (453)
T ss_pred ceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhccchhccceeeecceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhHHHHHHhcC----------------------------------CCCCCCCCCeEEEcccCccCCCCC--CCh
Q 012077 350 NWAILVDRYEEMIEKYR----------------------------------PGLGDHRWPLVTHFVGCKPCAKFG--DNL 393 (471)
Q Consensus 350 yW~~iv~r~e~~~~~y~----------------------------------pG~GD~r~pFVtHFaGC~~c~~~~--~y~ 393 (471)
||.+||++||+||++|+ +|.||+||||||||+|||||++.+ +|+
T Consensus 327 yW~~iv~~~e~~~~~y~~~er~~~~lrrrhae~~~~~y~~~re~~~~~~~~~G~g~~R~PfvTHF~GC~pC~g~~n~~Y~ 406 (453)
T PLN03181 327 YWAEIVGRLDNITERYLEMEREDATLRRRHAEKVSERYAAFREEALKGPAGGGKGSWRRPFVTHFTGCQPCSGDHNKMYS 406 (453)
T ss_pred eHHHHHhHHHHHHHHHHHhhhcchhhhhhhhhhhhhhhhhhhhhhhccCCCCCCCCccCcccccccCccccCCCCCCCCC
Confidence 99999999999999998 788999999999999999999865 899
Q ss_pred HHHHHHHhHHhhccchhhHHHhhccccCCCC-CcCceecc
Q 012077 394 AERCLRQMDRAFTFGDNQILRTYGFTHKSLA-SGRVKRVR 432 (471)
Q Consensus 394 ~~~C~~~M~ra~nfadnqvl~~yg~~h~~l~-~~~v~~~~ 432 (471)
+++||++|+||||||||||||+|||+|++|+ +..|.++-
T Consensus 407 ~~~C~~~m~ra~nFaDnQvl~~yGf~h~~l~~~~~v~p~~ 446 (453)
T PLN03181 407 GDSCWNGMRRALNFADNQVLRAYGFVHADLLDSSTVQPLP 446 (453)
T ss_pred HHHHHHHHHHHhccchHHHHHHhCcccccccCCCccccCC
Confidence 9999999999999999999999999999999 55787763
No 3
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4e-73 Score=575.82 Aligned_cols=333 Identities=38% Similarity=0.645 Sum_probs=274.0
Q ss_pred hccceehhhhhhHHHhhhccccccCCCCCCcccHHHHHhhcccCCCCCCCCcccchhhcccCCCCCccccCCCCCCCCcc
Q 012077 18 LRQCKVTALCLVLTVVVLRGIIGAGEFGTPEKDFYEIRNRLYFPSRKRGGDPHRVLEERRTTSSSFATHDRNHNKNNYDE 97 (471)
Q Consensus 18 ~~~~k~t~~c~~~t~~vlrgt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (471)
|+++|.+|+|+++|+|+|+||||.+.||++.++.....- . . +|+|.+ ...+.+.+.
T Consensus 1 m~~~~~~i~~~~~~~iil~~~~~~~~f~~~~~~~~~~~~---~-------~-~~~l~~-~~~~~~t~~------------ 56 (364)
T KOG4748|consen 1 MRFVKYKILCVIFTLIILAGTIGLAFFGFRLYFIVKIAL---S-------K-HRSLLD-SIASSSTDV------------ 56 (364)
T ss_pred CCccceecccceeeeeehhhHHHhhhcccccccccchhh---h-------h-chhhhh-ccccccccc------------
Confidence 578999999999999999999999999998775422211 1 1 455555 332222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhhCCCCCCC-CCCCCcEEEEEeeCCCCCCCCcchHHHHHH
Q 012077 98 FNVKMFMEDNGEDDEKPDPNEPYSRGPKISNWDAQRAQWLNENPDFANF-INKKPRVLLVTGSSPKACENPVGDHYLLKS 176 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~wd~~r~~wl~~~p~~~~~-~~g~prIvIVT~sd~~~c~~~~gd~yL~ks 176 (471)
.+.+.....++..|+.|+.|++|+++|+.|+.+||.++.. ++++++|+|+|+|++++|+++.+++|++++
T Consensus 57 ---------~~~p~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~~~~~~p~~~~IvlL~~S~~~~~~n~~~~~~~~~~ 127 (364)
T KOG4748|consen 57 ---------YEEPSHVSVPELTYLDGPLITTWTTQRSVTLNVHPLFTSFPNPDSDRIVLLTGSDGGPCDNSPGNHYLLKS 127 (364)
T ss_pred ---------cCCCccccccccceeccceeccccccceeEeecCccccccCCCCCCEEEEEEccCCCCCCCCcccHHHHHH
Confidence 1123344557889999999999999999999999999873 458999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEeccccCc---ccccccchHHHHHHHHhcCCCccEEEEeeCCceeecCCCCCCccccCCCCeee
Q 012077 177 IKNKIDYCRVHGLEIFYSTALLDA---EMAGFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTFEVPWERYKDYNLVM 253 (471)
Q Consensus 177 ikNk~~YAr~HGY~~~~~~~~ld~---~~~~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~sLpLe~~~d~nLvI 253 (471)
++||++||++|||+++|+++..+. +++++|+|+|+||++|++||++|||||||+||+||||+++||...+++.+|+.
T Consensus 128 ikNridYA~rHgy~~~~~~~~~~~~~~e~~~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~ 207 (364)
T KOG4748|consen 128 IKNRIDYARRHGYEFEYKNATLDKRYHELPGVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMNPDLSLQDHILKPENLVT 207 (364)
T ss_pred HHhHHHHHHHhCCeEEEEecccccccccccchhHHhHHHHHHHHHCCCCcEEEEecccchhhCcccchhHHhcCHHHHHH
Confidence 999999999999999998876554 89999999999999999999999999999999999999999987777766654
Q ss_pred cCcc---------------------------ceeeeCCCCccccccceeEeccHHHHHHHHHhcccCCCCccccchhhhh
Q 012077 254 HGWN---------------------------EMVYDQKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDDAGKKL 306 (471)
Q Consensus 254 ~g~~---------------------------dlI~tqddw~GLNtGsFLIRNs~WS~~fLDaWa~m~P~~pv~~~~g~~L 306 (471)
++.. .+|++|| ++|+|+|||||||++|+..|||+|.+ | ++
T Consensus 208 ~l~~nd~~~~~~~n~~~~~~~~~~~d~~~~~~~ii~qD-~nG~naGSfLirns~~~~~llD~w~d--p---~l------- 274 (364)
T KOG4748|consen 208 HLLRNDQKSINPLNIFRLRPRTPSLDDLEDIAFIIPQD-CNGINAGSFLIRNSEWGRLLLDAWND--P---LL------- 274 (364)
T ss_pred hhccccccccccCCccccccccccccchhhhceecccC-CCCccccceEEecCccchhHHHhccC--H---HH-------
Confidence 4332 4566664 67777777777777777777777753 3 21
Q ss_pred hhhhcCCCCCCCCchhHHHHHHhhccccccCeeeeecchhhchhhhHhhhhHHHHHHhcCCCCCCCCCCeEEEcccCccC
Q 012077 307 TKELKDRPAFEADDQSAMVYSLATERDKWGDKVYLESEYYLHVNWAILVDRYEEMIEKYRPGLGDHRWPLVTHFVGCKPC 386 (471)
Q Consensus 307 ~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~~kV~len~y~l~gyW~~iv~r~e~~~~~y~pG~GD~r~pFVtHFaGC~~c 386 (471)
.. ..+...||+|+.|+++ +.++++|+|..+++||+++...++|+.|+++||||||||||
T Consensus 275 ----~~-~~~~~~Eq~al~~~~e-------------~h~~l~~~vgilp~r~ins~~~~~~~~g~~egdlvvhFaGC--- 333 (364)
T KOG4748|consen 275 ----YE-LLWGQKEQDALGHFLE-------------NHPQLHSHVGILPLRYINSYPNGAPGYGYEEGDLVVHFAGC--- 333 (364)
T ss_pred ----Hh-hccchHHHHHHHHHHh-------------hchhhhhheeeccHHHHhcCCCCCCCCccccCCeEEEeccc---
Confidence 11 3455677777777764 77899999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHhHHhhccchhhHHHhhccccCC
Q 012077 387 AKFGDNLAERCLRQMDRAFTFGDNQILRTYGFTHKS 422 (471)
Q Consensus 387 ~~~~~y~~~~C~~~M~ra~nfadnqvl~~yg~~h~~ 422 (471)
|..++|+++|+++++|+|||++..|||.|+.
T Consensus 334 -----~~~~~C~~~~~~y~~~~~~~~~~~~~~~~~~ 364 (364)
T KOG4748|consen 334 -----YVRNRCLEEMEKYFNLIDNKQGKLYGFPHEK 364 (364)
T ss_pred -----ccHhHHHHHHHHHHHHHHHhhhhhhccccCC
Confidence 4588999999999999999999999999973
No 4
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=100.00 E-value=8.2e-51 Score=395.20 Aligned_cols=210 Identities=40% Similarity=0.733 Sum_probs=44.7
Q ss_pred CCcEEEEEeeCCCCCCCCcchH-HHHHHHHHHHHHHHHhCCcEEEe-c-cccCcccccccchHHHHHHHHhcCCCccEEE
Q 012077 150 KPRVLLVTGSSPKACENPVGDH-YLLKSIKNKIDYCRVHGLEIFYS-T-ALLDAEMAGFWAKLPLIRNLLLGHPEVEFLW 226 (471)
Q Consensus 150 ~prIvIVT~sd~~~c~~~~gd~-yL~ksikNk~~YAr~HGY~~~~~-~-~~ld~~~~~~WaKip~IR~aL~a~PeaEWIw 226 (471)
+|+|||||++++++|.++.+++ |+.++++||++||++|||++++. . ...+++++++|+|+++||++|++||++||||
T Consensus 2 ~~~vvivt~~d~~~~~~~~~~~~~~~~~~~Nr~~Ya~~HgY~~~~~~~~~~~~~~~~~~W~K~~~lr~~m~~~P~~~wv~ 81 (239)
T PF05637_consen 2 SPKVVIVTASDFESCDKPSGDWSYLKKSIQNRVDYARRHGYDLYYRNIQEYDDPERPGSWAKIPALRAAMKKYPEAEWVW 81 (239)
T ss_dssp -------------------------------HHHHHHHHT-EEEEE-S--S--SHHHHHHTHHHHHHHHHHH-TT-SEEE
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHhcCCEEEEEChHHcCCCCCChhhHHHHHHHHHHHhCCCCCEEE
Confidence 6899999999999999888877 88999999999999999999983 2 3344678899999999999999999999999
Q ss_pred EeeCCceeecCCCCCCcccc----------CCCCe-----------eecCc-cceeeeCCCCccccccceeEeccHHHHH
Q 012077 227 WMDSDAMFTDMTFEVPWERY----------KDYNL-----------VMHGW-NEMVYDQKNWIGLNTGSFLLRNCQWSLD 284 (471)
Q Consensus 227 WLDsDAlImNp~~sLpLe~~----------~d~nL-----------vI~g~-~dlI~tqddw~GLNtGsFLIRNs~WS~~ 284 (471)
|||+||+||||+++|+-..+ ++.++ ++.+. .++++++ +|+|||+||||||||+||++
T Consensus 82 ~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~-d~~gLNtGsFliRns~ws~~ 160 (239)
T PF05637_consen 82 WLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQ-DWNGLNTGSFLIRNSPWSRD 160 (239)
T ss_dssp EE-TTEEE------------------------------------------------------------------------
T ss_pred EEcCCeEEEeccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 99999999999998641111 11111 12222 3677776 59999999999999999999
Q ss_pred HHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhccccccCeeeeecchhhchhhhHhhhhHHHHHHh
Q 012077 285 ILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATERDKWGDKVYLESEYYLHVNWAILVDRYEEMIEK 364 (471)
Q Consensus 285 fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~~kV~len~y~l~gyW~~iv~r~e~~~~~ 364 (471)
|||+|++ |.... ++...++++||+||+|||+.+++ ..+++.+.++.++|+|...... ..
T Consensus 161 fLd~w~~--~~~~~------------~~~~~~~~~EQsAl~~ll~~~~~-~~~~~~~vpq~~~nsy~~~~~~------~~ 219 (239)
T PF05637_consen 161 FLDAWAD--PLYRN------------YDWDQLEFDEQSALEHLLQWHPE-ILSKVALVPQRWFNSYPEDECN------YQ 219 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc--ccccc------------ccccccccccccccccccccccc-cccccccccccccccccccccc------cc
Confidence 9999974 43111 22233468999999999998875 4567778889999998544321 12
Q ss_pred cCCCCCCCCCCeEEEcccCccCC
Q 012077 365 YRPGLGDHRWPLVTHFVGCKPCA 387 (471)
Q Consensus 365 y~pG~GD~r~pFVtHFaGC~~c~ 387 (471)
|.+| | |||||+||+.|+
T Consensus 220 ~~~G--D----fvvhfaGC~~~~ 236 (239)
T PF05637_consen 220 YKEG--D----FVVHFAGCKVCG 236 (239)
T ss_dssp -----------------------
T ss_pred cccc--c----cccccccccccc
Confidence 3333 5 999999999975
No 5
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=99.64 E-value=1.6e-16 Score=152.71 Aligned_cols=124 Identities=23% Similarity=0.491 Sum_probs=96.0
Q ss_pred HHHHHHhCCcEEEec-cccC-cccccccchHHHHHHHHhcCCCccEEEEeeCCceeecCCCCCCccccCCCCeeecCccc
Q 012077 181 IDYCRVHGLEIFYST-ALLD-AEMAGFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTFEVPWERYKDYNLVMHGWNE 258 (471)
Q Consensus 181 ~~YAr~HGY~~~~~~-~~ld-~~~~~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~sLpLe~~~d~nLvI~g~~d 258 (471)
++||+.|||++++.. ..+. +..+-++.+++++.++| |+++||+|+|+|..|+||+..|+ .|-+..+.| .+.|
T Consensus 2 ~CY~~~~~Y~~~l~~d~~~~C~~kd~fFrRHCvva~~L---~~~~~vlflDaDigVvNp~~~iE--efid~~~Di-~fyd 75 (222)
T PF03314_consen 2 RCYCKIHGYPFILAHDTDFKCDQKDKFFRRHCVVAKIL---PEYDWVLFLDADIGVVNPNRRIE--EFIDEGYDI-IFYD 75 (222)
T ss_pred eEEeeccCCeEEEEecCCCCCcchhHHHHHHHHHHHHh---ccCCEEEEEcCCceeecCcccHH--HhcCCCCcE-EEEe
Confidence 589999999999632 2232 34778899999999999 88999999999999999998664 443433322 1223
Q ss_pred eeeeCCCCccccccceeEeccHHHHHHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhh
Q 012077 259 MVYDQKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLAT 330 (471)
Q Consensus 259 lI~tqddw~GLNtGsFLIRNs~WS~~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~ 330 (471)
.++ +| .+.+||||+||++||++||..|++|+.+. + .+|...|+.||+-+|+.
T Consensus 76 R~~---n~-Ei~agsYlvkNT~~~~~fl~~~a~~E~~l--------------P--~sfhGtDNGAlH~~L~e 127 (222)
T PF03314_consen 76 RFF---NW-EIAAGSYLVKNTEYSRDFLKEWADYEFKL--------------P--NSFHGTDNGALHIFLAE 127 (222)
T ss_pred ccc---ch-hhhhccceeeCCHHHHHHHHHHhhhCccC--------------C--CccccCccHHHHHHHHH
Confidence 333 35 69999999999999999999999986542 2 26889999999988873
No 6
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=98.61 E-value=1.8e-08 Score=104.22 Aligned_cols=74 Identities=26% Similarity=0.157 Sum_probs=67.5
Q ss_pred CCCCccccccceeEeccHHHHHHHHHhcccCCCCccccchhhhhhhhhc-CCCCCCCCchhHHHHHHhhccccccCe
Q 012077 263 QKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDDAGKKLTKELK-DRPAFEADDQSAMVYSLATERDKWGDK 338 (471)
Q Consensus 263 qddw~GLNtGsFLIRNs~WS~~fLDaWa~m~P~~pv~~~~g~~L~~~l~-~~~~f~~~DQsAL~yLL~~q~~~w~~k 338 (471)
+..|+++| +|++|+++|+++.+++|+.|.|++.....+|.+|.++.. +++.+++.+|.+|.+++..|+++|+-+
T Consensus 214 ~~~~~~~n--~~~~~~~~~~~d~~~~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~~~~~~~Eq~al~ 288 (364)
T KOG4748|consen 214 QKSINPLN--IFRLRPRTPSLDDLEDIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYELLWGQKEQDALG 288 (364)
T ss_pred ccccccCC--ccccccccccccchhhhceecccCCCCccccceEEecCccchhHHHhccCHHHHhhccchHHHHHHH
Confidence 56799999 999999999999999999999999999999999998887 888899999999999999988877543
No 7
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=98.49 E-value=4.8e-07 Score=85.27 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=99.3
Q ss_pred HHHHHHhCCcEEE-ecc---cc----C----cccccccchHHHHHHHHhcCCCccEEEEeeCCceeecCCCCCCccccCC
Q 012077 181 IDYCRVHGLEIFY-STA---LL----D----AEMAGFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTFEVPWERYKD 248 (471)
Q Consensus 181 ~~YAr~HGY~~~~-~~~---~l----d----~~~~~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~sLpLe~~~d 248 (471)
.++|+..|+..++ ... .. . .-..-.|.|+.+++.+|..- + =||++|+|+++...-+ |.-...+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G--~-~vl~~D~Dvv~~~dp~--~~~~~~~ 90 (212)
T PF03407_consen 16 YDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELG--Y-DVLFSDADVVWLRDPL--PYFENPD 90 (212)
T ss_pred HHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC--C-ceEEecCCEEEecCcH--HhhccCC
Confidence 3578888888664 221 10 0 01244799999999999863 2 3899999999886532 2111122
Q ss_pred CCeeecCccceeeeCCCCc---------cccccceeEeccHHHHHHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCC
Q 012077 249 YNLVMHGWNEMVYDQKNWI---------GLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEAD 319 (471)
Q Consensus 249 ~nLvI~g~~dlI~tqddw~---------GLNtGsFLIRNs~WS~~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~ 319 (471)
.|+++.+|.+. .+|+|.|++|+++.+..|++.|.... ... -...
T Consensus 91 --------~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~-----------------~~~--~~~~ 143 (212)
T PF03407_consen 91 --------ADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERM-----------------AES--PGCW 143 (212)
T ss_pred --------CceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHH-----------------HhC--CCcc
Confidence 34444443322 36999999999999999999997521 111 1235
Q ss_pred chhHHHHHHhhcccc-ccCeeeeecchhh-chhhhHhhh-hHHHHHHhcCCCCCCCCCCeEEEcccCc
Q 012077 320 DQSAMVYSLATERDK-WGDKVYLESEYYL-HVNWAILVD-RYEEMIEKYRPGLGDHRWPLVTHFVGCK 384 (471)
Q Consensus 320 DQsAL~yLL~~q~~~-w~~kV~len~y~l-~gyW~~iv~-r~e~~~~~y~pG~GD~r~pFVtHFaGC~ 384 (471)
||.||..++...... -.-++.+-+.-.| +|.. .... +.. ....+ ..-|+++|+.+|.
T Consensus 144 DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~-~f~~~~~~------~~~~~-~~~p~~vH~n~~~ 203 (212)
T PF03407_consen 144 DQQAFNELLREQAARYGGLRVRFLPPSLFPNGHG-YFCQSRDW------AWVPT-KNKPYIVHANCCD 203 (212)
T ss_pred hHHHHHHHHHhcccCCcCcEEEEeCHHHeecccc-ceeecchh------hhhcc-ccccceEEEcCCC
Confidence 999999999875422 2346666565444 2211 1111 100 11111 3468999999988
No 8
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=97.31 E-value=0.00077 Score=63.16 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=58.1
Q ss_pred ccccchHHHHHHHHhcC-CCccEEEEeeCCceeecCCCC---CCccccCCCCee-ecC------------ccceeeeCCC
Q 012077 203 AGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDMTFE---VPWERYKDYNLV-MHG------------WNEMVYDQKN 265 (471)
Q Consensus 203 ~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp~~s---LpLe~~~d~nLv-I~g------------~~dlI~tqdd 265 (471)
...|.+..+.|-.+... |++|.|+|||+|++|+..--+ ++++ +..+. ... ........ .
T Consensus 79 ~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (250)
T PF01501_consen 79 KRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQ---GKYLAAVEDESFDNFPNKRFPFSERKQPG-N 154 (250)
T ss_dssp CTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---T---TSSEEEEE----HHHHTSTTSSEEECEST-T
T ss_pred cccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccch---hhhccccccchhhhhhhcccchhhcccCc-c
Confidence 33444444444333333 889999999999999885211 1111 11110 000 00111122 2
Q ss_pred CccccccceeEeccHHHHHHHH-HhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHh
Q 012077 266 WIGLNTGSFLLRNCQWSLDILD-AWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLA 329 (471)
Q Consensus 266 w~GLNtGsFLIRNs~WS~~fLD-aWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~ 329 (471)
-.++|+|++++....|..+-+. .+..+ + ..........||++|.+++.
T Consensus 155 ~~~fNsGv~l~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~DQ~~ln~~~~ 203 (250)
T PF01501_consen 155 KPYFNSGVMLFNPSKWRKENILQKLIEW-------------L---EQNGMKLGFPDQDILNIVFY 203 (250)
T ss_dssp TTSEEEEEEEEEHHHHHHHHHHHHHHHH-------------H---HHTTTT-SSCHHHHHHHHHT
T ss_pred cccccCcEEEEeechhhhhhhhhhhhhh-------------h---hhcccccCcCchHHHhhhcc
Confidence 3689999999999999976554 33321 0 01111446799999999987
No 9
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=96.99 E-value=0.011 Score=60.00 Aligned_cols=155 Identities=13% Similarity=0.161 Sum_probs=83.8
Q ss_pred CCCCcEEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHhCCcEEEeccccCcccccccchHHHHHHHHhcCCCccEEEE
Q 012077 148 NKKPRVLLVTGSSPKACENPVGDHYLLKSIKNKIDYCRVHGLEIFYSTALLDAEMAGFWAKLPLIRNLLLGHPEVEFLWW 227 (471)
Q Consensus 148 ~g~prIvIVT~sd~~~c~~~~gd~yL~ksikNk~~YAr~HGY~~~~~~~~ld~~~~~~WaKip~IR~aL~a~PeaEWIwW 227 (471)
+..++|+|||..-... .. .....+..-..+.||.+..-.....+.....|... +.|-.+-+.+++|=|++
T Consensus 28 s~~dlVvLvt~~~~~~----~~-----~~~~~~~~~l~~~~~~v~~v~~~~~~~~~~~~~~~-~tKl~~~~l~~y~kvly 97 (278)
T cd06914 28 SKAKLVLLVPETLLDR----NL-----DDFVRRDLLLARDKVIVKLIPVIIASGGDAYWAKS-LTKLRAFNQTEYDRIIY 97 (278)
T ss_pred CCCCEEEEECCCCChh----hh-----hhHHHHHHHhhccCcEEEEcCcccCCCCCccHHHH-HHHHHhccccceeeEEE
Confidence 4678999999755431 11 11111111124556655421111112223456554 66666656678999999
Q ss_pred eeCCceeecCCCCCCccccCCCCeeecCccceeeeCCCCccccccceeEeccHHHHHHH-HHhcccCCCCccccchhhhh
Q 012077 228 MDSDAMFTDMTFEVPWERYKDYNLVMHGWNEMVYDQKNWIGLNTGSFLLRNCQWSLDIL-DAWAPMGPKGKVRDDAGKKL 306 (471)
Q Consensus 228 LDsDAlImNp~~sLpLe~~~d~nLvI~g~~dlI~tqddw~GLNtGsFLIRNs~WS~~fL-DaWa~m~P~~pv~~~~g~~L 306 (471)
||+|+++.+.--+| -..... .. +-.....| .+|+|+|+|.-+.|...=| +...++.
T Consensus 98 LDaD~l~~~~ideL--f~~~~~-~~------~Aap~~~~-~FNSGvmvi~ps~~~~~~l~~~~~~~~------------- 154 (278)
T cd06914 98 FDSDSIIRHPMDEL--FFLPNY-IK------FAAPRAYW-KFASHLMVIKPSKEAFKELMTEILPAY------------- 154 (278)
T ss_pred ecCChhhhcChHHH--hcCCcc-cc------eeeecCcc-eecceeEEEeCCHHHHHHHHHHHHHhc-------------
Confidence 99999999841101 011100 00 00111124 7999999999999995544 4443321
Q ss_pred hhhhcCCCCCCCCchhHHHHHHhhccccccCeeee
Q 012077 307 TKELKDRPAFEADDQSAMVYSLATERDKWGDKVYL 341 (471)
Q Consensus 307 ~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~~kV~l 341 (471)
.. .....||++|..++...+......+.+
T Consensus 155 ----~~--~~~~~DQdiLN~~~~~~~~~~~~~~~~ 183 (278)
T cd06914 155 ----LN--KKNEYDMDLINEEFYNSKQLFKPSVLV 183 (278)
T ss_pred ----cc--CCCCCChHHHHHHHhCCccccCcceEE
Confidence 11 114679999999998654334444433
No 10
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=96.84 E-value=0.0027 Score=61.89 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=52.6
Q ss_pred cccchHHHHHHHHhcCCCccEEEEeeCCceeecCCCCCCccccCCCCeeecCccceeeeCCCCccccccceeEeccHHHH
Q 012077 204 GFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTFEVPWERYKDYNLVMHGWNEMVYDQKNWIGLNTGSFLLRNCQWSL 283 (471)
Q Consensus 204 ~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~sLpLe~~~d~nLvI~g~~dlI~tqddw~GLNtGsFLIRNs~WS~ 283 (471)
..|.|+.+.. .+.+|-|.|||+|++|...=-+| -.. +..+.. -.|... -..+|+|+++++.+....
T Consensus 77 ~~~~kl~~~~-----l~~~drvlylD~D~~v~~~i~~L--f~~-~~~~~a--~~d~~~----~~~fNsGv~l~~~~~~~~ 142 (240)
T cd02537 77 DTYTKLRLWN-----LTEYDKVVFLDADTLVLRNIDEL--FDL-PGEFAA--APDCGW----PDLFNSGVFVLKPSEETF 142 (240)
T ss_pred HHhHHHHhcc-----ccccceEEEEeCCeeEccCHHHH--hCC-CCceee--ecccCc----cccccceEEEEcCCHHHH
Confidence 3466654443 24689999999999999752111 111 111110 011100 147999999999976433
Q ss_pred H-HHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhh
Q 012077 284 D-ILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLAT 330 (471)
Q Consensus 284 ~-fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~ 330 (471)
+ +++.... ...+...||++|.+++..
T Consensus 143 ~~~~~~~~~---------------------~~~~~~~DQdiLN~~~~~ 169 (240)
T cd02537 143 NDLLDALQD---------------------TPSFDGGDQGLLNSYFSD 169 (240)
T ss_pred HHHHHHHhc---------------------cCCCCCCCHHHHHHHHcC
Confidence 2 3333321 112456899999999974
No 11
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=96.73 E-value=0.0053 Score=59.33 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=61.5
Q ss_pred ccccchHHHHHHHHhcC-CCccEEEEeeCCceeecCCCC---CCccccCCCCee-ec-Cccc--------eeeeCCCCcc
Q 012077 203 AGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDMTFE---VPWERYKDYNLV-MH-GWNE--------MVYDQKNWIG 268 (471)
Q Consensus 203 ~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp~~s---LpLe~~~d~nLv-I~-g~~d--------lI~tqddw~G 268 (471)
...|.+..+.|-.+-.. |+++.+.|||+|++|...=-+ +++ .+..+. .+ .... .....+ -..
T Consensus 76 ~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~---~~~~~aa~~d~~~~~~~~~~~~~~~~~~-~~y 151 (248)
T cd04194 76 TDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDL---GDNLLAAVRDPFIEQEKKRKRRLGGYDD-GSY 151 (248)
T ss_pred cccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCc---CCCEEEEEecccHHHHHHHHhhcCCCcc-cce
Confidence 45677777776666543 789999999999999884111 111 111111 11 0100 011122 247
Q ss_pred ccccceeEeccHHHH-HHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhh
Q 012077 269 LNTGSFLLRNCQWSL-DILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLAT 330 (471)
Q Consensus 269 LNtGsFLIRNs~WS~-~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~ 330 (471)
+|+|+|++.-+.|-. .+.+.+.++ +. .....+...||++|..++..
T Consensus 152 fNsGv~l~nl~~~r~~~~~~~~~~~-------------~~---~~~~~~~~~DQd~LN~~~~~ 198 (248)
T cd04194 152 FNSGVLLINLKKWREENITEKLLEL-------------IK---EYGGRLIYPDQDILNAVLKD 198 (248)
T ss_pred eeecchheeHHHHHHhhhHHHHHHH-------------HH---hCCCceeeCChHHHHHHHhC
Confidence 999999998888864 233333211 10 00113457899999998873
No 12
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=95.39 E-value=0.027 Score=54.79 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=59.2
Q ss_pred ccchHHHHHHHHhc-CCCccEEEEeeCCceeecCCC---CCCccccCCCCeee-cCcc----------ceeeeCCCCccc
Q 012077 205 FWAKLPLIRNLLLG-HPEVEFLWWMDSDAMFTDMTF---EVPWERYKDYNLVM-HGWN----------EMVYDQKNWIGL 269 (471)
Q Consensus 205 ~WaKip~IR~aL~a-~PeaEWIwWLDsDAlImNp~~---sLpLe~~~d~nLvI-~g~~----------dlI~tqddw~GL 269 (471)
.|++..+.|=.+-. .|.++=|++||+|++|...=- ++++ .+..+.. .... .+-...+ -.++
T Consensus 78 ~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l---~~~~~aav~d~~~~~~~~~~~~~~~~~~~-~~yf 153 (246)
T cd00505 78 PIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPL---GGQELAAAPDPGDRREGKYYRQKRSHLAG-PDYF 153 (246)
T ss_pred ccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccC---CCCeEEEccCchhhhccchhhcccCCCCC-CCce
Confidence 44444444443322 277999999999999987411 1121 1111110 0000 0011122 2489
Q ss_pred cccceeEeccHHH-HHHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhc
Q 012077 270 NTGSFLLRNCQWS-LDILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATE 331 (471)
Q Consensus 270 NtGsFLIRNs~WS-~~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q 331 (471)
|+|+++|....|- .++++..... ...........||++|..++...
T Consensus 154 NsGVmlinl~~~r~~~~~~~~~~~----------------~~~~~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 154 NSGVFVVNLSKERRNQLLKVALEK----------------WLQSLSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eeeeEEEechHHHHHHHHHHHHHH----------------HHhhcccCccCCcHHHHHHHhcC
Confidence 9999999999994 6666554320 00111134569999999998743
No 13
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=95.19 E-value=0.05 Score=54.45 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=83.1
Q ss_pred cccccchHHHHHHHHhcC-CCccEEEEeeCCceeecCCCCCCccccCCCCeeecCccceeeeCCCCccccccceeEeccH
Q 012077 202 MAGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDMTFEVPWERYKDYNLVMHGWNEMVYDQKNWIGLNTGSFLLRNCQ 280 (471)
Q Consensus 202 ~~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp~~sLpLe~~~d~nLvI~g~~dlI~tqddw~GLNtGsFLIRNs~ 280 (471)
.+..|++..+.|=++-.. |+.+=+++||+|+++..-=- .+-+.++ .+. .+..-.+ ++|+|+++|-...
T Consensus 93 ~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~-----eL~~~dl--~~~--~~aav~d--yfNsGV~linl~~ 161 (257)
T cd06429 93 KPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLT-----ELWNTDL--GGG--VAGAVET--SWNPGVNVVNLTE 161 (257)
T ss_pred CccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHH-----HHhhCCC--CCC--EEEEEhh--hcccceEEEeHHH
Confidence 456799998888877553 78899999999999987421 1111111 011 1111112 7999999998888
Q ss_pred HHHHHH----HHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhccccccCeeeeecchhhchhhhHhhh
Q 012077 281 WSLDIL----DAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATERDKWGDKVYLESEYYLHVNWAILVD 356 (471)
Q Consensus 281 WS~~fL----DaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~~kV~len~y~l~gyW~~iv~ 356 (471)
|-..=+ ..|...... .....+..+||++|.-++... -.++...|-..+ +
T Consensus 162 wr~~~i~~~~~~~~~~~~~---------------~~~~~~~~~dqd~ln~~~~~~------~~~L~~~wN~~~----l-- 214 (257)
T cd06429 162 WRRQNVTETYEKWMELNQE---------------EEVTLWKLITLPPGLIVFYGL------TSPLDPSWHVRG----L-- 214 (257)
T ss_pred HHhccHHHHHHHHHHHhhh---------------cccchhhcCCccHHHHHccCe------eEECChHHcccC----C--
Confidence 875422 123211000 001134568999998666521 112222221111 0
Q ss_pred hHHHHHHhcCCCCCCCCCCeEEEccc-CccCCCCCCChHHHHHH
Q 012077 357 RYEEMIEKYRPGLGDHRWPLVTHFVG-CKPCAKFGDNLAERCLR 399 (471)
Q Consensus 357 r~e~~~~~y~pG~GD~r~pFVtHFaG-C~~c~~~~~y~~~~C~~ 399 (471)
.++.... ......|-|+||+| -||+.....++..+.|.
T Consensus 215 ~~~~~~~-----~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~ 253 (257)
T cd06429 215 GYNYGIR-----PQDIKAAAVLHFNGNMKPWLRTAIPSYKELWE 253 (257)
T ss_pred ccccccc-----ccccCCcEEEEECCCCCCcCCCCCChHHHHHH
Confidence 0000000 01123579999999 47776555566555554
No 14
>PLN00176 galactinol synthase
Probab=95.04 E-value=0.079 Score=55.22 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=30.7
Q ss_pred ccccccceeEeccHHH-HHHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHh
Q 012077 267 IGLNTGSFLLRNCQWS-LDILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLA 329 (471)
Q Consensus 267 ~GLNtGsFLIRNs~WS-~~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~ 329 (471)
..+|+|+|+|..+.|. .++++.... . ..+.+.||+.|..++.
T Consensus 182 ~yFNSGVlvinps~~~~~~ll~~l~~-~--------------------~~~~f~DQD~LN~~F~ 224 (333)
T PLN00176 182 LYFNAGMFVFEPSLSTYEDLLETLKI-T--------------------PPTPFAEQDFLNMFFR 224 (333)
T ss_pred CeEEeEEEEEEcCHHHHHHHHHHHHh-c--------------------CCCCCCCHHHHHHHHc
Confidence 4799999999999999 445544321 1 1224589999999997
No 15
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=94.86 E-value=0.094 Score=54.22 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=70.3
Q ss_pred HHHHHHhCCcEEE---eccccCc-ccccccchHHHHHHHHhcC-C-CccEEEEeeCCceeecCCCCCCccc--cCCCCe-
Q 012077 181 IDYCRVHGLEIFY---STALLDA-EMAGFWAKLPLIRNLLLGH-P-EVEFLWWMDSDAMFTDMTFEVPWER--YKDYNL- 251 (471)
Q Consensus 181 ~~YAr~HGY~~~~---~~~~ld~-~~~~~WaKip~IR~aL~a~-P-eaEWIwWLDsDAlImNp~~sLpLe~--~~d~nL- 251 (471)
...+..+|-.+.+ +...+.. .....|++..+.|=.+-.. | +++=|++||+|+++... ++ +|-. +.+..+
T Consensus 74 ~~l~~~~~~~i~~~~id~~~~~~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~-~L~~~dl~~~~~a 151 (334)
T PRK15171 74 SALAKQYNTRINIYLINCERLKSLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IK-ELIDLDFAENEIA 151 (334)
T ss_pred HHHHHhcCCeEEEEEeCHHHHhCCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HH-HHHhccCCCCeEE
Confidence 3556666655542 2222211 1234699888888655443 6 69999999999999984 21 1111 111111
Q ss_pred -eec-Ccc--------ceeeeCCCCccccccceeEeccHHHHH-HHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCc
Q 012077 252 -VMH-GWN--------EMVYDQKNWIGLNTGSFLLRNCQWSLD-ILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADD 320 (471)
Q Consensus 252 -vI~-g~~--------dlI~tqddw~GLNtGsFLIRNs~WS~~-fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~D 320 (471)
++. +.. .+......-..+|+||+||=...|-.. +-+.+.++--. + ... ..+...|
T Consensus 152 av~~d~~~~~~~~~~~~l~~~~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~-~-----------~~~--~~~~~~D 217 (334)
T PRK15171 152 AVVAEGDAEWWSKRAQSLQTPGLASGYFNSGFLLINIPAWAQENISAKAIEMLAD-P-----------EIV--SRITHLD 217 (334)
T ss_pred EEEeccchhHHHHHHHhcCCccccccceecceEEEcHHHHHHhhHHHHHHHHHhc-c-----------ccc--cceeecC
Confidence 111 100 111111111369999999999988754 22333221000 0 000 1234589
Q ss_pred hhHHHHHHh
Q 012077 321 QSAMVYSLA 329 (471)
Q Consensus 321 QsAL~yLL~ 329 (471)
|++|..++.
T Consensus 218 QDiLN~~~~ 226 (334)
T PRK15171 218 QDVLNILLA 226 (334)
T ss_pred hhHHHHHHc
Confidence 999999987
No 16
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=94.34 E-value=0.17 Score=52.27 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=69.7
Q ss_pred HHHHHhCCcEEEeccccCcccccccch----HHHHHHHHhcC-CCccEEEEeeCCceeecCCCCC-C-ccccCCCCee--
Q 012077 182 DYCRVHGLEIFYSTALLDAEMAGFWAK----LPLIRNLLLGH-PEVEFLWWMDSDAMFTDMTFEV-P-WERYKDYNLV-- 252 (471)
Q Consensus 182 ~YAr~HGY~~~~~~~~ld~~~~~~WaK----ip~IR~aL~a~-PeaEWIwWLDsDAlImNp~~sL-p-Le~~~d~nLv-- 252 (471)
.|....+|.++-- .+.......|.+ ..+.|=.+-.. |+.+=|++||+|++|..+=-+| . +..+.+..+.
T Consensus 54 ~~~~~i~~~i~~I--~~P~~~~~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~ 131 (304)
T cd06430 54 LIDRKFNYTLHPI--TFPSGNAAEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAM 131 (304)
T ss_pred hccceeeeEEEEE--ecCccchhhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEE
Confidence 4455566666521 121111234655 44444433322 7889999999999999863221 0 1122222221
Q ss_pred ec-------CccceeeeC--CCCccccccceeEeccHHHHHHH--------HHhcccCCCCccccchhhhhhhhhcC-CC
Q 012077 253 MH-------GWNEMVYDQ--KNWIGLNTGSFLLRNCQWSLDIL--------DAWAPMGPKGKVRDDAGKKLTKELKD-RP 314 (471)
Q Consensus 253 I~-------g~~dlI~tq--ddw~GLNtGsFLIRNs~WS~~fL--------DaWa~m~P~~pv~~~~g~~L~~~l~~-~~ 314 (471)
+. +|....... ....|+|+||+||-...|-..-+ ..|.+ .+..++.+ +.
T Consensus 132 v~e~~~~~~~~~~~~~~~~~~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 198 (304)
T cd06430 132 APEHEEPNIGWYNRFARHPYYGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEE-------------ILMPLYKKYKL 198 (304)
T ss_pred EecccccchhhhhhhcccCcccccccccceeeeeHHHHHhhhcccccchhhhhHHH-------------HHHHHHHhccc
Confidence 10 111100000 11257999999999988886422 22211 11111111 12
Q ss_pred CCCCCchhHHHHHHhhcc
Q 012077 315 AFEADDQSAMVYSLATER 332 (471)
Q Consensus 315 ~f~~~DQsAL~yLL~~q~ 332 (471)
.+...||++|..++..++
T Consensus 199 ~l~~~DQDiLN~v~~~~p 216 (304)
T cd06430 199 KITWGDQDLINIIFHHNP 216 (304)
T ss_pred CCCCCCHHHHHHHHcCCC
Confidence 356799999999998554
No 17
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=93.42 E-value=0.15 Score=51.67 Aligned_cols=114 Identities=17% Similarity=0.203 Sum_probs=59.6
Q ss_pred ccchH-HHHHHHHhc-CC-CccEEEEeeCCceeecCCCCC-Cc-cccCCCCee--ecCcc--------ceeee-CCCCcc
Q 012077 205 FWAKL-PLIRNLLLG-HP-EVEFLWWMDSDAMFTDMTFEV-PW-ERYKDYNLV--MHGWN--------EMVYD-QKNWIG 268 (471)
Q Consensus 205 ~WaKi-p~IR~aL~a-~P-eaEWIwWLDsDAlImNp~~sL-pL-e~~~d~nLv--I~g~~--------dlI~t-qddw~G 268 (471)
.|+.. .+.|=.+-. .| +++=|++||+|++|.+.=.+| .+ ..+.+..+. +.... ..... ...-.+
T Consensus 78 ~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~y 157 (280)
T cd06431 78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRG 157 (280)
T ss_pred chhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCcccccc
Confidence 45554 334444433 26 699999999999999863321 00 012222221 11000 00000 000138
Q ss_pred ccccceeEeccHHHHH-HHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhc
Q 012077 269 LNTGSFLLRNCQWSLD-ILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATE 331 (471)
Q Consensus 269 LNtGsFLIRNs~WS~~-fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q 331 (471)
+|+|++||-...|-.. +.+.|..+ ..+++.....+...||++|..++..+
T Consensus 158 FNsGVmlinL~~wR~~~~~~~~~~~-------------~~~~~~~~~~~~~~DQDiLN~v~~~~ 208 (280)
T cd06431 158 FNTGVILLDLDKLRKMKWESMWRLT-------------AERELMSMLSTSLADQDIFNAVIKQN 208 (280)
T ss_pred eeeeeeeeeHHHHHhhCHHHHHHHH-------------HHHHHhhcCCCCcCcHHHHHHHHcCC
Confidence 9999999998887754 22334221 11111112234679999999999743
No 18
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.46 E-value=0.45 Score=49.54 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=66.6
Q ss_pred ccccchHHHHHHHHhcC-CCccEEEEeeCCceeecC---CCCCCccccCCCCeeecCcc--------ceeeeCCCCcccc
Q 012077 203 AGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDM---TFEVPWERYKDYNLVMHGWN--------EMVYDQKNWIGLN 270 (471)
Q Consensus 203 ~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp---~~sLpLe~~~d~nLvI~g~~--------dlI~tqddw~GLN 270 (471)
..-|++..+.|=.+..+ |+.+=+.|+|+|+++++- .+.++++.+--. .|..... ..-.....-.++|
T Consensus 78 ~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~a-aV~D~~~~~~~~~~~~~~~~~~~~~yFN 156 (325)
T COG1442 78 TKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLA-AVRDVFSHYMKEGALRLEKGDLEGSYFN 156 (325)
T ss_pred ccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEE-EEeehhhhhhhhhhhHhhhcccccccCc
Confidence 35688888888777665 888999999999999984 222333311000 0110000 0000011124699
Q ss_pred ccceeEeccHHHHHHHHHhc-ccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhh
Q 012077 271 TGSFLLRNCQWSLDILDAWA-PMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLAT 330 (471)
Q Consensus 271 tGsFLIRNs~WS~~fLDaWa-~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~ 330 (471)
+|+.++=+..|-.+-+..=+ ++ +. .+. -.+.+.||++|..+++.
T Consensus 157 aG~llinl~~W~~~~i~~k~i~~-------------~~--~~~-~~~~~~DQdiLN~i~~~ 201 (325)
T COG1442 157 AGVLLINLKLWREENIFEKLIEL-------------LK--DKE-NDLLYPDQDILNMIFED 201 (325)
T ss_pred cceeeehHHHHHHhhhHHHHHHH-------------Hh--ccc-cccCCccccHHHHHHHh
Confidence 99999999999887775422 11 00 011 14567899999999984
No 19
>PLN02769 Probable galacturonosyltransferase
Probab=90.27 E-value=1.5 Score=49.36 Aligned_cols=170 Identities=12% Similarity=0.133 Sum_probs=89.8
Q ss_pred cccccchHHHHHHHHhc-CCCccEEEEeeCCceeecCCCC---CCccccCCCCe-eec-------Ccc----ceeeeCCC
Q 012077 202 MAGFWAKLPLIRNLLLG-HPEVEFLWWMDSDAMFTDMTFE---VPWERYKDYNL-VMH-------GWN----EMVYDQKN 265 (471)
Q Consensus 202 ~~~~WaKip~IR~aL~a-~PeaEWIwWLDsDAlImNp~~s---LpLe~~~d~nL-vI~-------g~~----dlI~tqdd 265 (471)
.+.+++-.-.+|=.|-. +|+++=|++||+|+||..-=-+ +++. +.-+ .+. .+. ..-+..+.
T Consensus 431 ~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~---gkviAAVedc~~rl~~~~~yl~~~~F~~~~ 507 (629)
T PLN02769 431 RTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMG---GKVNGAVQFCGVRLGQLKNYLGDTNFDTNS 507 (629)
T ss_pred CcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCC---CCeEEEehhhhhhhhhhhhhhcccCCCccc
Confidence 45667777776665533 3889999999999999874111 1111 1100 010 000 11222334
Q ss_pred CccccccceeEeccHHHHHHHHH----hcccCCCCccccchhhhhhhhhc-CCCCCCCCchhHHHHHHhhccccccCee-
Q 012077 266 WIGLNTGSFLLRNCQWSLDILDA----WAPMGPKGKVRDDAGKKLTKELK-DRPAFEADDQSAMVYSLATERDKWGDKV- 339 (471)
Q Consensus 266 w~GLNtGsFLIRNs~WS~~fLDa----Wa~m~P~~pv~~~~g~~L~~~l~-~~~~f~~~DQsAL~yLL~~q~~~w~~kV- 339 (471)
| ++|+|+++|=...|-..=+.. |.. .... +...+..+.|.++-.++. +++
T Consensus 508 C-yFNSGVLLINL~~WRk~nITe~~~~~~~----------------~~~~~~~~~~~~~~Lp~lnlvF~-------g~v~ 563 (629)
T PLN02769 508 C-AWMSGLNVIDLDKWRELDVTETYLKLLQ----------------KFSKDGEESLRAAALPASLLTFQ-------DLIY 563 (629)
T ss_pred c-ccccCeeEeeHHHHHHhCHHHHHHHHHH----------------HhhhcccccccccCcCHHHHHhc-------CeEE
Confidence 4 689999999999998764432 321 0001 122345567777654443 222
Q ss_pred eeecchhhch--hhhHhhhhHHHHHHhcCCCCCCCCCCeEEEccc-CccCCCCCCChHHHHHHHhHHhhccchhhHHHh
Q 012077 340 YLESEYYLHV--NWAILVDRYEEMIEKYRPGLGDHRWPLVTHFVG-CKPCAKFGDNLAERCLRQMDRAFTFGDNQILRT 415 (471)
Q Consensus 340 ~len~y~l~g--yW~~iv~r~e~~~~~y~pG~GD~r~pFVtHFaG-C~~c~~~~~y~~~~C~~~M~ra~nfadnqvl~~ 415 (471)
.|...|-+.| |...+ . ......|-|+||+| -||+...+.++.++.|... ++ -|+.-|+.
T Consensus 564 ~LD~rWNv~gLG~~~~i-----------~--~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kY---l~-~~~~fl~~ 625 (629)
T PLN02769 564 PLDDRWVLSGLGHDYGI-----------D--EQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRF---LN-RDDRFMDE 625 (629)
T ss_pred ECCHHHccccccccccc-----------c--ccccCCcEEEEECCCCCCccCCCCChHHHHHHHH---hc-cCChHHhh
Confidence 2333332222 11011 0 01335689999999 5887666666666666544 45 34444443
No 20
>PLN02718 Probable galacturonosyltransferase
Probab=87.78 E-value=1.1 Score=50.07 Aligned_cols=173 Identities=15% Similarity=0.195 Sum_probs=93.5
Q ss_pred ccccchHHHHHHHHhc-CCCccEEEEeeCCceeecCCCC---CCcccc-----CCC-----Cee----ecCccc-e---e
Q 012077 203 AGFWAKLPLIRNLLLG-HPEVEFLWWMDSDAMFTDMTFE---VPWERY-----KDY-----NLV----MHGWNE-M---V 260 (471)
Q Consensus 203 ~~~WaKip~IR~aL~a-~PeaEWIwWLDsDAlImNp~~s---LpLe~~-----~d~-----nLv----I~g~~d-l---I 260 (471)
+..|+...+.|=.|-. +|+++=|++||+|.++..-=-+ +++... .+- .+. .-++.+ + -
T Consensus 398 ~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~ 477 (603)
T PLN02718 398 PRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKK 477 (603)
T ss_pred cccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhcc
Confidence 4679888888876654 3889999999999999874111 121100 000 000 000111 0 1
Q ss_pred eeCCCCccccccceeEeccHHHHHHHHH----hcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhcccccc
Q 012077 261 YDQKNWIGLNTGSFLLRNCQWSLDILDA----WAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATERDKWG 336 (471)
Q Consensus 261 ~tqddw~GLNtGsFLIRNs~WS~~fLDa----Wa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~ 336 (471)
+..+.| ++|+|+++|=...|-..-+.. |.... .++ ..-||++|--++.. +.
T Consensus 478 fn~~~C-yfNsGVlLIDLk~WReenITe~~~~~l~~n-----------------~~~---~l~dqdaLpp~Llv----F~ 532 (603)
T PLN02718 478 FDPKAC-TWAFGMNLFDLEEWRRQKLTSVYHKYLQLG-----------------VKR---PLWKAGSLPIGWLT----FY 532 (603)
T ss_pred cCCCcc-ccccceEEEeHHHHHhcChHHHHHHHHHhc-----------------cCc---cccCcccccHHHHH----hc
Confidence 233445 799999999999998865543 42211 111 23568888522221 11
Q ss_pred Cee-eeecchhhchhhhHhhhhHHHHHHhcCCC--CCCCCCCeEEEccc-CccCCCCCCChHHHHHHHhHHhhccchhhH
Q 012077 337 DKV-YLESEYYLHVNWAILVDRYEEMIEKYRPG--LGDHRWPLVTHFVG-CKPCAKFGDNLAERCLRQMDRAFTFGDNQI 412 (471)
Q Consensus 337 ~kV-~len~y~l~gyW~~iv~r~e~~~~~y~pG--~GD~r~pFVtHFaG-C~~c~~~~~y~~~~C~~~M~ra~nfadnqv 412 (471)
+++ .+...|.+.|+- |.++ ..+-+.|-|+||.| -||+...+.-....+|.... |+ |+.-
T Consensus 533 gri~~LD~rWNv~gLG-------------~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v---~~-~~~~ 595 (603)
T PLN02718 533 NQTVALDKRWHVLGLG-------------HESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHV---PY-HHPY 595 (603)
T ss_pred CceeecChHHhccCcc-------------ccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhc---CC-CChH
Confidence 222 333444333320 1111 11345689999999 58887655444568887544 43 4444
Q ss_pred HHhhc
Q 012077 413 LRTYG 417 (471)
Q Consensus 413 l~~yg 417 (471)
|+.-+
T Consensus 596 l~~Cn 600 (603)
T PLN02718 596 LQQCN 600 (603)
T ss_pred HHhcC
Confidence 55443
No 21
>PLN02829 Probable galacturonosyltransferase
Probab=86.22 E-value=2.5 Score=47.63 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=89.3
Q ss_pred cccccchHHHHHHHHhcC-CCccEEEEeeCCceeecCCCC---CCccccCCCCe-eec-------------Cccc----e
Q 012077 202 MAGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDMTFE---VPWERYKDYNL-VMH-------------GWNE----M 259 (471)
Q Consensus 202 ~~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp~~s---LpLe~~~d~nL-vI~-------------g~~d----l 259 (471)
.+.+|+.+-+.|=.|-.. |+++=|++||+|+++.+.=-+ +++. +.-+ .+. ++.+ .
T Consensus 436 ~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~---gkviAAVedc~~~f~r~~~~l~fs~p~i~~ 512 (639)
T PLN02829 436 NPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLK---GNVNGAVETCGESFHRFDRYLNFSNPLISK 512 (639)
T ss_pred CcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCC---CceEEEeccchhhhhhhhhhhhccchHhhh
Confidence 478899999998877543 889999999999999885211 1221 1100 000 0000 1
Q ss_pred eeeCCCCccccccceeEeccHHHHHHHH----HhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhccccc
Q 012077 260 VYDQKNWIGLNTGSFLLRNCQWSLDILD----AWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATERDKW 335 (471)
Q Consensus 260 I~tqddw~GLNtGsFLIRNs~WS~~fLD----aWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q~~~w 335 (471)
-+..+.| ++|+|+++|=...|-..=+. .|.... .++ ..-+|++|--+|.. +
T Consensus 513 ~Fn~~~C-yFNSGVmVINL~~WRe~nITe~y~~wm~~n-----------------~~r---~L~dlgaLPp~Ll~----F 567 (639)
T PLN02829 513 NFDPHAC-GWAYGMNVFDLDEWKRQNITEVYHSWQKLN-----------------HDR---QLWKLGTLPPGLIT----F 567 (639)
T ss_pred ccCCccc-ceecceEEEeHHHHHHhChHHHHHHHHHHc-----------------cCC---ccccccCCChHHHH----h
Confidence 1233444 69999999998888755432 353211 111 12467777754432 2
Q ss_pred cCee-eeecchhhchhhhHhhhhHHHHHHhcCCC--CCCCCCCeEEEcccC-ccCCCCCCChHHHHHHHhH
Q 012077 336 GDKV-YLESEYYLHVNWAILVDRYEEMIEKYRPG--LGDHRWPLVTHFVGC-KPCAKFGDNLAERCLRQMD 402 (471)
Q Consensus 336 ~~kV-~len~y~l~gyW~~iv~r~e~~~~~y~pG--~GD~r~pFVtHFaGC-~~c~~~~~y~~~~C~~~M~ 402 (471)
..++ .+...|.+.|+. |.++ ..+-+.|-|+||.|- ||=...+..+.+.+|....
T Consensus 568 ~g~i~~LD~rWNv~GLG-------------y~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl 625 (639)
T PLN02829 568 WKRTYPLDRSWHVLGLG-------------YNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYV 625 (639)
T ss_pred cCceEecChhheecCCC-------------CCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHH
Confidence 2333 334455455431 1111 113456799999994 5544444445567786653
No 22
>PLN02742 Probable galacturonosyltransferase
Probab=84.56 E-value=2.7 Score=46.63 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=86.8
Q ss_pred ccccchHHHHHHHHhc-CCCccEEEEeeCCceeecCCCC---CCccccCCCCe-ee-------c------Cc----ccee
Q 012077 203 AGFWAKLPLIRNLLLG-HPEVEFLWWMDSDAMFTDMTFE---VPWERYKDYNL-VM-------H------GW----NEMV 260 (471)
Q Consensus 203 ~~~WaKip~IR~aL~a-~PeaEWIwWLDsDAlImNp~~s---LpLe~~~d~nL-vI-------~------g~----~dlI 260 (471)
+.+|+-..++|=+|-. +|.++=|++||+|.+|..-=-+ +++. +.-+ .+ + ++ +...
T Consensus 333 p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~---~~viaAVedC~~~f~ry~~yLnfS~p~i~~~ 409 (534)
T PLN02742 333 PKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLH---GNVNGAVETCLETFHRYHKYLNFSHPLISSH 409 (534)
T ss_pred cccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCC---CCEEEEeCchhhhhhhhhhhhcccchhhhcc
Confidence 6778888888877754 3889999999999999874111 1111 1100 00 0 00 1112
Q ss_pred eeCCCCccccccceeEeccHHHHHHHH----HhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhcccccc
Q 012077 261 YDQKNWIGLNTGSFLLRNCQWSLDILD----AWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATERDKWG 336 (471)
Q Consensus 261 ~tqddw~GLNtGsFLIRNs~WS~~fLD----aWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~ 336 (471)
+..+.| ++|+|+++|=-..|-..-+. .|..+.. .-..-||++|--+|.. +.
T Consensus 410 f~~~aC-~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~--------------------~~~l~d~gaLpp~LLa----F~ 464 (534)
T PLN02742 410 FDPDAC-GWAFGMNVFDLVAWRKANVTAIYHYWQEQNV--------------------DRTLWKLGTLPPGLLT----FY 464 (534)
T ss_pred CCCCcc-ccccCcEEEeHHHHHhhcHHHHHHHHHHhcc--------------------ccccccccccchHHHH----Hc
Confidence 334556 79999999999999865443 4533211 1123467777644331 11
Q ss_pred Cee-eeecchhhchhhhHhhhhHHHHHHhcCCCCCCCCCCeEEEcccC-ccCCCCCCChHHHHHHHh
Q 012077 337 DKV-YLESEYYLHVNWAILVDRYEEMIEKYRPGLGDHRWPLVTHFVGC-KPCAKFGDNLAERCLRQM 401 (471)
Q Consensus 337 ~kV-~len~y~l~gyW~~iv~r~e~~~~~y~pG~GD~r~pFVtHFaGC-~~c~~~~~y~~~~C~~~M 401 (471)
+++ .+...|-+.|+- |+- .+.+ ...+.|-|+||.|- ||+...+..+..+.|...
T Consensus 465 g~~~~LD~rWNv~gLG------~~~---~v~~--~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kY 520 (534)
T PLN02742 465 GLTEPLDRRWHVLGLG------YDT---NIDP--RLIESAAVLHFNGNMKPWLKLAIERYKPLWERY 520 (534)
T ss_pred CcceecChhheecccc------ccc---ccch--hhccCCeEEEECCCCCcccccCCcccchHHHHH
Confidence 222 233333332220 000 0000 13456799999997 888665443344567654
No 23
>PLN02523 galacturonosyltransferase
Probab=80.43 E-value=4.3 Score=45.26 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=26.8
Q ss_pred ccccchHHHHHHHHhcC-CCccEEEEeeCCceeecC
Q 012077 203 AGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDM 237 (471)
Q Consensus 203 ~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp 237 (471)
+.+++..-+.|=.|-.. |+++=|++||+|+++..-
T Consensus 357 p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~D 392 (559)
T PLN02523 357 PKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKD 392 (559)
T ss_pred cchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCC
Confidence 35577777777666443 889999999999999874
No 24
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=79.82 E-value=3.9 Score=46.24 Aligned_cols=169 Identities=16% Similarity=0.218 Sum_probs=87.2
Q ss_pred cccchHHHHHHHHhcC-CCccEEEEeeCCceeecCCCC---CCccccCCCCe-eec-------------Ccc----ceee
Q 012077 204 GFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDMTFE---VPWERYKDYNL-VMH-------------GWN----EMVY 261 (471)
Q Consensus 204 ~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp~~s---LpLe~~~d~nL-vI~-------------g~~----dlI~ 261 (471)
.+-+-.-+.|-.|-.. |+++=|++||+|.++.+.=-+ ++++ +.-+ ++. ++. .--+
T Consensus 456 ~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~---g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yF 532 (657)
T PLN02910 456 KYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQ---GMVNGAVETCKESFHRFDKYLNFSNPKISENF 532 (657)
T ss_pred chhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcC---CceEEEecccchhhhhhhhhhccCChhhhhcc
Confidence 3334444455444322 789999999999999885211 1221 1100 000 000 0123
Q ss_pred eCCCCccccccceeEeccHHHH----HHHHHhcccCCCCccccchhhhhhhhhcCCCCCCCCchhHHHHHHhhccccccC
Q 012077 262 DQKNWIGLNTGSFLLRNCQWSL----DILDAWAPMGPKGKVRDDAGKKLTKELKDRPAFEADDQSAMVYSLATERDKWGD 337 (471)
Q Consensus 262 tqddw~GLNtGsFLIRNs~WS~----~fLDaWa~m~P~~pv~~~~g~~L~~~l~~~~~f~~~DQsAL~yLL~~q~~~w~~ 337 (471)
..+.| ++|+|+++|=-..|-. +.++.|-.+.- ....-||++|--.|.. +..
T Consensus 533 Ns~aC-yfNsGVmVIDL~~WRe~nITe~ye~w~eln~--------------------~~~L~dqgsLPpgLLv----F~g 587 (657)
T PLN02910 533 DPNAC-GWAFGMNMFDLKEWRKRNITGIYHYWQDLNE--------------------DRTLWKLGSLPPGLIT----FYN 587 (657)
T ss_pred CCCCc-eeecccEEEeHHHHHHhhHHHHHHHHHHhcc--------------------cccccccCCCChHHHH----HhC
Confidence 33444 7899999999999983 35566644211 1133567777632221 222
Q ss_pred ee-eeecchhhchhhhHhhhhHHHHHHhcCCCC--CCCCCCeEEEcccC-ccCCCCCCChHHHHHHHhHHhhccchhhHH
Q 012077 338 KV-YLESEYYLHVNWAILVDRYEEMIEKYRPGL--GDHRWPLVTHFVGC-KPCAKFGDNLAERCLRQMDRAFTFGDNQIL 413 (471)
Q Consensus 338 kV-~len~y~l~gyW~~iv~r~e~~~~~y~pG~--GD~r~pFVtHFaGC-~~c~~~~~y~~~~C~~~M~ra~nfadnqvl 413 (471)
++ .+...|...|+. |.++. .+-+.|-|+||.|- ||=...+..+..++|... ++ -|+.-|
T Consensus 588 ~i~pLD~rWNv~GLG-------------yd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kY---l~-~d~~fl 650 (657)
T PLN02910 588 LTYPLDRSWHVLGLG-------------YDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRY---VQ-YDNPYL 650 (657)
T ss_pred ceeecCchheecCCC-------------CCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHH---cc-CCChHH
Confidence 23 344455455531 11111 13456899999996 443333334445777655 44 355555
Q ss_pred Hhhc
Q 012077 414 RTYG 417 (471)
Q Consensus 414 ~~yg 417 (471)
+.-.
T Consensus 651 ~~Cn 654 (657)
T PLN02910 651 QLCN 654 (657)
T ss_pred HhCC
Confidence 5443
No 25
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=77.63 E-value=1.2 Score=45.36 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.7
Q ss_pred CCccEEEEeeCCceeecCCC
Q 012077 220 PEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 220 PeaEWIwWLDsDAlImNp~~ 239 (471)
|..+||+|+|+|.+.+.+++
T Consensus 141 p~~swVlWlDaDIv~~P~~l 160 (269)
T PF03452_consen 141 PWHSWVLWLDADIVETPPTL 160 (269)
T ss_pred CcccEEEEEecCcccCChHH
Confidence 78999999999999777765
No 26
>PLN02867 Probable galacturonosyltransferase
Probab=50.76 E-value=43 Score=37.52 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=26.7
Q ss_pred cccccchHHHHHHHHhcC-CCccEEEEeeCCceeec
Q 012077 202 MAGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTD 236 (471)
Q Consensus 202 ~~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImN 236 (471)
.|.+=+.+-++|=++-.. |+++=|++||+|.++..
T Consensus 324 ~pkylS~lnYlRflIPeLLP~LdKVLYLD~DVVVqg 359 (535)
T PLN02867 324 SPSCLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQH 359 (535)
T ss_pred ChhhhhHHHHHHHHHHHHhhccCeEEEecCCEEEcC
Confidence 455566666666666443 88999999999999987
No 27
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=49.42 E-value=45 Score=33.18 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=16.4
Q ss_pred C-CccEEEEeeCCceeecC
Q 012077 220 P-EVEFLWWMDSDAMFTDM 237 (471)
Q Consensus 220 P-eaEWIwWLDsDAlImNp 237 (471)
| +++=|++||+|+++.+.
T Consensus 93 P~~vdkvLYLD~Dilv~~d 111 (248)
T cd06432 93 PLNVDKVIFVDADQIVRTD 111 (248)
T ss_pred hhccCEEEEEcCCceeccc
Confidence 6 68999999999999986
No 28
>TIGR01606 holin_BlyA holin, BlyA family. This family represents a BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage. This protein was previously proposed to be an hemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C-terminus.
Probab=47.39 E-value=7.4 Score=31.64 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHhhccceehhhhhhHHHhhhccccc
Q 012077 14 FHRALRQCKVTALCLVLTVVVLRGIIG 40 (471)
Q Consensus 14 ~~~~~~~~k~t~~c~~~t~~vlrgt~~ 40 (471)
+--+++|.|..++.+|+|++||.+-+-
T Consensus 9 fL~~l~niklI~lmifi~~~IL~~~l~ 35 (63)
T TIGR01606 9 FLLQLINIKLIKLMIFISIFILSLGLI 35 (63)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999987553
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=41.99 E-value=80 Score=30.40 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=40.1
Q ss_pred EEEEeeCCCCCCCCcchHHHHHHHHH--HHHHHH-------HhCCcEEE-eccccCcccccccchHHHHHHHHh--cCCC
Q 012077 154 LLVTGSSPKACENPVGDHYLLKSIKN--KIDYCR-------VHGLEIFY-STALLDAEMAGFWAKLPLIRNLLL--GHPE 221 (471)
Q Consensus 154 vIVT~sd~~~c~~~~gd~yL~ksikN--k~~YAr-------~HGY~~~~-~~~~ld~~~~~~WaKip~IR~aL~--a~Pe 221 (471)
+||+++++. ..++.+++++ .++|-. .+.|++++ ....-|.......+...+++.+.. +...
T Consensus 1 v~ip~yNE~-------~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~~~gk~~~~~~~~~~~~~~~~~a~ 73 (244)
T cd04190 1 VCVTMYNED-------EEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKKNRGKRDSQLWFFNYFCRVLFPDD 73 (244)
T ss_pred CEEeeecCC-------HHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcccccCcchHHHHHHHHHHHHHhhcCC
Confidence 467777663 2456666664 455542 45677775 222212111112222222322221 1257
Q ss_pred ccEEEEeeCCceeec
Q 012077 222 VEFLWWMDSDAMFTD 236 (471)
Q Consensus 222 aEWIwWLDsDAlImN 236 (471)
.|||..+|+|+++-.
T Consensus 74 ~e~i~~~DaD~~~~~ 88 (244)
T cd04190 74 PEFILLVDADTKFDP 88 (244)
T ss_pred CCEEEEECCCCcCCH
Confidence 899999999999843
No 30
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=40.18 E-value=39 Score=27.69 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCccEEEEeeCCceeecCCC
Q 012077 211 LIRNLLLGHPEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 211 ~IR~aL~a~PeaEWIwWLDsDAlImNp~~ 239 (471)
+..++...+.+++|++++|+|=++..+.-
T Consensus 61 ~~~~~~~~~~~~dWvl~~D~DEfl~~~~~ 89 (97)
T PF13704_consen 61 WRNALIERAFDADWVLFLDADEFLVPPPG 89 (97)
T ss_pred HHHHHHHhCCCCCEEEEEeeeEEEecCCC
Confidence 33344434468899999999999998863
No 31
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=37.78 E-value=46 Score=32.39 Aligned_cols=72 Identities=6% Similarity=0.100 Sum_probs=41.9
Q ss_pred EEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHhCCcEEEeccccCcccccccchHHHHHHHHhcCCCccEEEEeeCCc
Q 012077 153 VLLVTGSSPKACENPVGDHYLLKSIKNKIDYCRVHGLEIFYSTALLDAEMAGFWAKLPLIRNLLLGHPEVEFLWWMDSDA 232 (471)
Q Consensus 153 IvIVT~sd~~~c~~~~gd~yL~ksikNk~~YAr~HGY~~~~~~~~ld~~~~~~WaKip~IR~aL~a~PeaEWIwWLDsDA 232 (471)
|+||+.++.+ .++.+.++|-...----||.+.+. ...+.++--.+..++|.+ .+++|+.||..|.
T Consensus 1 isiI~c~n~~--------~~~~~~~~~i~~~~~~~~~~i~i~------~~~~~~s~~~~yN~a~~~-a~~~ylvflHqDv 65 (217)
T PF13712_consen 1 ISIIICVNDE--------ELYEECLRSIKRLIGPPGELIEID------NVRNAKSMAAAYNEAMEK-AKAKYLVFLHQDV 65 (217)
T ss_dssp EEEEEEES-H--------HHHHHHHHHHHHTT--TEEEEEEE-------SSS-S-TTTHHHHHGGG---SSEEEEEETTE
T ss_pred CEEEEEECCH--------HHHHHHHHHHHhhCCCCceEEEEe------ccCCCcCHHHHHHHHHHh-CCCCEEEEEeCCe
Confidence 6788887653 344556665444433334443331 122335556678888877 7899999999999
Q ss_pred eeecCCC
Q 012077 233 MFTDMTF 239 (471)
Q Consensus 233 lImNp~~ 239 (471)
.|.+.++
T Consensus 66 ~i~~~~~ 72 (217)
T PF13712_consen 66 FIINENW 72 (217)
T ss_dssp E-SSHHH
T ss_pred EEcchhH
Confidence 9999765
No 32
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=37.44 E-value=1.8e+02 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=23.4
Q ss_pred cccchHHHHHHHHhcCCCccEEEEeeCCceeecCCC
Q 012077 204 GFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 204 ~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~ 239 (471)
+.-.|...+..++.. ...|||+++|+|+.+ +|+.
T Consensus 70 g~~~~~~~~n~g~~~-a~~d~i~~~D~D~~~-~~~~ 103 (196)
T cd02520 70 GINPKVNNLIKGYEE-ARYDILVISDSDISV-PPDY 103 (196)
T ss_pred CCCHhHHHHHHHHHh-CCCCEEEEECCCceE-ChhH
Confidence 334566666555543 678999999999875 5554
No 33
>PF05102 Holin_BlyA: holin, BlyA family; InterPro: IPR006493 This family is represented by BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage []. This protein was previously proposed to be a haemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C terminus.
Probab=36.82 E-value=14 Score=29.98 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=21.9
Q ss_pred HHHhhccceehhhhhhHHHhhhcccc
Q 012077 14 FHRALRQCKVTALCLVLTVVVLRGII 39 (471)
Q Consensus 14 ~~~~~~~~k~t~~c~~~t~~vlrgt~ 39 (471)
+--+++|.|+.++.+|+|+++|.+-+
T Consensus 9 fl~~l~~iklI~~~ifI~v~IL~~ii 34 (61)
T PF05102_consen 9 FLSNLNNIKLIILMIFITVLILPLII 34 (61)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHHH
Confidence 45578999999999999999996544
No 34
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=33.15 E-value=2.7e+02 Score=26.55 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=35.5
Q ss_pred HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCCcc-hHHHHHHHHHHHHHHHHhCCcEEE
Q 012077 132 QRAQWLNENPDFANFINKKPRVLLVTGSSPKACENPVG-DHYLLKSIKNKIDYCRVHGLEIFY 193 (471)
Q Consensus 132 ~r~~wl~~~p~~~~~~~g~prIvIVT~sd~~~c~~~~g-d~yL~ksikNk~~YAr~HGY~~~~ 193 (471)
.+++||++|| . .++-+|..-|+++++... ......+++.-..-...+|+.+.+
T Consensus 16 ~Q~~ll~~~~-~--------~Lvs~tlniPGpvK~~~~~~~~f~~~~~~l~~~~~~~~~~~~~ 69 (165)
T TIGR03124 16 RQQELLKKYP-L--------TLLSLTLNIPGPIKNNELLRRVFDIGIKAIEALLAKNGWTILV 69 (165)
T ss_pred HHHHHHHhCC-C--------eEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeeee
Confidence 3455778874 2 366699999999876654 233355566667777788887664
No 35
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=31.36 E-value=51 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.5
Q ss_pred chHHHHHHHHhcCCCccEEEEeeCCceeecCCC
Q 012077 207 AKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 207 aKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~ 239 (471)
-|+.-|..++.++.++++|++.|+|+.+. |+.
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~-p~~ 48 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVP-PDY 48 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeEC-HHH
Confidence 36666666665546889999999999764 544
No 36
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=29.88 E-value=3.4e+02 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.6
Q ss_pred hHHHHHHHHhcC-CCccEEEEeeCCceee
Q 012077 208 KLPLIRNLLLGH-PEVEFLWWMDSDAMFT 235 (471)
Q Consensus 208 Kip~IR~aL~a~-PeaEWIwWLDsDAlIm 235 (471)
|...|..++.+. .+.|+|..||+|.++.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~ 109 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMS 109 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Confidence 889999999753 5789999999998764
No 37
>PF01539 HCV_env: Hepatitis C virus envelope glycoprotein E1; InterPro: IPR002519 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0019031 viral envelope; PDB: 2KNU_A.
Probab=29.30 E-value=18 Score=35.27 Aligned_cols=31 Identities=26% Similarity=0.696 Sum_probs=0.0
Q ss_pred eEEEcccCccCCCCCCChHHHHHHHhHHhhccc
Q 012077 376 LVTHFVGCKPCAKFGDNLAERCLRQMDRAFTFG 408 (471)
Q Consensus 376 FVtHFaGC~~c~~~~~y~~~~C~~~M~ra~nfa 408 (471)
.|.|..||-||.+.++-+ +||-..-..+.--
T Consensus 27 ~iLH~PGCVPCvr~~N~s--rCW~pvtPtlAv~ 57 (190)
T PF01539_consen 27 AILHLPGCVPCVREGNTS--RCWVPVTPTLAVR 57 (190)
T ss_dssp ---------------------------------
T ss_pred eEeecCCceeEEeeCCce--eeEEecCcceeec
Confidence 999999999998766544 9999888766543
No 38
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=28.15 E-value=2.4e+02 Score=26.30 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=51.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHhCCcEEEeccccCcccccccchH
Q 012077 130 DAQRAQWLNENPDFANFINKKPRVLLVTGSSPKACENPVGDHYLLKSIKNKIDYCRVHGLEIFYSTALLDAEMAGFWAKL 209 (471)
Q Consensus 130 d~~r~~wl~~~p~~~~~~~g~prIvIVT~sd~~~c~~~~gd~yL~ksikNk~~YAr~HGY~~~~~~~~ld~~~~~~WaKi 209 (471)
++-|+.|.+....- ..+-+++.|.|..+++ +.-+...+ ..=++.||==+..+ ..|. ....-.|.
T Consensus 4 ~~IR~TW~~~~~~~----~~~~~~~FvvG~~~~~------~~~~~~~l---~~E~~~y~Dil~~d--~~D~-y~nlt~K~ 67 (195)
T PF01762_consen 4 QAIRETWGNQRNFK----GVRVKVVFVVGESPNS------DSDLQEAL---QEEAEKYGDILQGD--FVDS-YRNLTLKT 67 (195)
T ss_pred HHHHHHHhcccccC----CCcEEEEEEEecCCCC------cHHHHHHh---hhhhhhcCceEeee--cccc-cchhhHHH
Confidence 45688898763211 2456788888877642 11222222 22345566222222 2222 22334466
Q ss_pred HHHHHHHhcC-CCccEEEEeeCCceeecC
Q 012077 210 PLIRNLLLGH-PEVEFLWWMDSDAMFTDM 237 (471)
Q Consensus 210 p~IR~aL~a~-PeaEWIwWLDsDAlImNp 237 (471)
.+.-+...++ |.++||+-+|.|+++.=+
T Consensus 68 ~~~~~w~~~~c~~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 68 LAGLKWASKHCPNAKYVLKVDDDVFVNPD 96 (195)
T ss_pred HHHHHHHHhhCCchhheeecCcEEEEehH
Confidence 5555555555 889999999999977443
No 39
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=25.24 E-value=3.9e+02 Score=27.70 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=48.1
Q ss_pred CCcEEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHh---CCcEEE----e-ccccCc--------------ccccccc
Q 012077 150 KPRVLLVTGSSPKACENPVGDHYLLKSIKNKIDYCRVH---GLEIFY----S-TALLDA--------------EMAGFWA 207 (471)
Q Consensus 150 ~prIvIVT~sd~~~c~~~~gd~yL~ksikNk~~YAr~H---GY~~~~----~-~~~ld~--------------~~~~~Wa 207 (471)
+-+|+|.....++ +.. |+...++ =|++| ||.++| + ...++. .....|.
T Consensus 33 n~tIgl~vfatGk-----Y~~-f~~~F~~----SAEk~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~~~~~W~ 102 (271)
T cd02515 33 NITIGLTVFAVGK-----YTE-FLERFLE----SAEKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIAEESRWQ 102 (271)
T ss_pred CCEEEEEEEEecc-----HHH-HHHHHHH----HHHHhccCCCeeEEEEEeCCcccCcccccCCCceeEEEEeccccCCc
Confidence 4578887776654 332 4444444 45555 676653 1 111111 1235688
Q ss_pred hHHHHHHHHh-----cC--CCccEEEEeeCCceeecC
Q 012077 208 KLPLIRNLLL-----GH--PEVEFLWWMDSDAMFTDM 237 (471)
Q Consensus 208 Kip~IR~aL~-----a~--PeaEWIwWLDsDAlImNp 237 (471)
-+.++|.-|. ++ -+++|++++|+|+.|.++
T Consensus 103 ~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ 139 (271)
T cd02515 103 DISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGP 139 (271)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeec
Confidence 7777776555 33 389999999999999996
No 40
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=24.81 E-value=4.1e+02 Score=24.61 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=20.8
Q ss_pred hHHHHHHHHhcC-CCccEEEEeeCCceeecCCC
Q 012077 208 KLPLIRNLLLGH-PEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 208 Kip~IR~aL~a~-PeaEWIwWLDsDAlImNp~~ 239 (471)
|..++..++..- .+.|||+++|+|+++ .|+.
T Consensus 70 ~~~a~n~g~~~a~~~~d~i~~lD~D~~~-~~~~ 101 (236)
T cd06435 70 KAGALNYALERTAPDAEIIAVIDADYQV-EPDW 101 (236)
T ss_pred chHHHHHHHHhcCCCCCEEEEEcCCCCc-CHHH
Confidence 455566665543 357999999999764 5443
No 41
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=24.45 E-value=61 Score=29.92 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=23.4
Q ss_pred cccchHHHHHHHHhcCCCccEEEEeeCCceeecCCC
Q 012077 204 GFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 204 ~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~ 239 (471)
+...|..++..++..- +.|||+++|+|+++ +|++
T Consensus 70 g~~~k~~a~n~~~~~~-~~d~i~~lD~D~~~-~p~~ 103 (228)
T PF13641_consen 70 GPGGKARALNEALAAA-RGDYILFLDDDTVL-DPDW 103 (228)
T ss_dssp HHHHHHHHHHHHHHH----SEEEEE-SSEEE--CHH
T ss_pred CcchHHHHHHHHHHhc-CCCEEEEECCCcEE-CHHH
Confidence 3456888888888764 68999999999998 7755
No 42
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=23.43 E-value=2.4e+02 Score=29.55 Aligned_cols=92 Identities=26% Similarity=0.260 Sum_probs=55.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHhCCcEEEeccccCcccccccchHH
Q 012077 131 AQRAQWLNENPDFANFINKKPRVLLVTGSSPKACENPVGDHYLLKSIKNKIDYCRVHGLEIFYSTALLDAEMAGFWAKLP 210 (471)
Q Consensus 131 ~~r~~wl~~~p~~~~~~~g~prIvIVT~sd~~~c~~~~gd~yL~ksikNk~~YAr~HGY~~~~~~~~ld~~~~~~WaKip 210 (471)
+-|+.|.+++. ..+++-+++.+.|..+.. + +.-+.-..=|++||==+.. ...|.-..-+. |..
T Consensus 113 aiR~TW~~~~~----v~~~~v~~~FLvG~~~~~------~----~~~~~l~~Ea~~ygDIi~~--df~Dty~nltl-Ktl 175 (349)
T KOG2287|consen 113 AIRKTWGNENN----VRGGRVRVLFLVGLPSNE------D----KLNKLLADEARLYGDIIQV--DFEDTYFNLTL-KTL 175 (349)
T ss_pred HHHHHhcCccc----cCCCcEEEEEEecCCCcH------H----HHHHHHHHHHHHhCCEEEE--ecccchhchHH-HHH
Confidence 45788888754 345677888888877642 2 1123344556677722222 22232223334 555
Q ss_pred HHHHHHhc-CCCccEEEEeeCCceeecCCC
Q 012077 211 LIRNLLLG-HPEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 211 ~IR~aL~a-~PeaEWIwWLDsDAlImNp~~ 239 (471)
++...-.+ -|.+++|+=.|.|++|-=+.+
T Consensus 176 ~~l~w~~~~cp~akfi~K~DDDvfv~~~~L 205 (349)
T KOG2287|consen 176 AILLWGVSKCPDAKFILKIDDDVFVNPDNL 205 (349)
T ss_pred HHHHHHHhcCCcceEEEeccCceEEcHHHH
Confidence 55555544 499999999999998865544
No 43
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=22.55 E-value=3.9e+02 Score=25.54 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=38.1
Q ss_pred CCCcEEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHhCCcEEEeccccCcccccccchHHHHHHHHhc
Q 012077 149 KKPRVLLVTGSSPKACENPVGDHYLLKSIKNKIDYCRVHGLEIFYSTALLDAEMAGFWAKLPLIRNLLLG 218 (471)
Q Consensus 149 g~prIvIVT~sd~~~c~~~~gd~yL~ksikNk~~YAr~HGY~~~~~~~~ld~~~~~~WaKip~IR~aL~a 218 (471)
...||+||.+.... .+..+.++--.+..+.||-.-. +... -..||+|.-+.++++++.+
T Consensus 9 ~~~riaIV~srfn~--------~It~~Ll~gA~~~l~~~G~~~~-~i~v--~~VPGA~EiP~~a~~l~~~ 67 (158)
T PRK12419 9 TPQRIAFIQARWHA--------DIVDQARKGFVAEIAARGGAAS-QVDI--FDVPGAFEIPLHAQTLAKT 67 (158)
T ss_pred CCCEEEEEEecCCH--------HHHHHHHHHHHHHHHHcCCCcc-ceEE--EECCcHHHHHHHHHHHHhc
Confidence 45799999987653 3445566677777789994211 0001 1378999877777777754
No 44
>PLN02870 Probable galacturonosyltransferase
Probab=22.23 E-value=68 Score=35.98 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=30.9
Q ss_pred cccccchHHHHHHHHhcC-CCccEEEEeeCCceeecC
Q 012077 202 MAGFWAKLPLIRNLLLGH-PEVEFLWWMDSDAMFTDM 237 (471)
Q Consensus 202 ~~~~WaKip~IR~aL~a~-PeaEWIwWLDsDAlImNp 237 (471)
.|.+++.+.+.|=.|-.. |+++=|++||+|.++...
T Consensus 322 ~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgD 358 (533)
T PLN02870 322 SPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRD 358 (533)
T ss_pred CccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCc
Confidence 578899999998777543 899999999999999875
No 45
>PF11201 DUF2982: Protein of unknown function (DUF2982); InterPro: IPR021367 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.16 E-value=1.5e+02 Score=28.14 Aligned_cols=96 Identities=23% Similarity=0.314 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCCCCChH----------------HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCCcchHH--HH
Q 012077 113 KPDPNEPYSRGPKISNWD----------------AQRAQWLNENPDFANFINKKPRVLLVTGSSPKACENPVGDHY--LL 174 (471)
Q Consensus 113 ~~~~~~~y~~~~~i~~wd----------------~~r~~wl~~~p~~~~~~~g~prIvIVT~sd~~~c~~~~gd~y--L~ 174 (471)
-|--++|| +|-|+++.| |||.-.+..-..-.. ...-..+++ - +... ..+.|..| +.
T Consensus 37 ~~~~~Lp~-IGiKLkdy~~~L~~IspRLA~~LL~EQR~Ll~~a~~q~~~-~~~~e~~l~-~--~~~y-~~~~G~~y~Gl~ 110 (152)
T PF11201_consen 37 LWHQPLPY-IGIKLKDYDPFLDSISPRLATRLLTEQRPLLMLAARQDCD-GQCLEDMLL-D--DFPY-ISPNGERYKGLI 110 (152)
T ss_pred ccccccce-eeEEecChHHHHhhcCHHHHHHHHHhHHHHHHHHHhccCc-cCCHHHHhc-C--CCCc-ccCCCcEehhHH
Confidence 34446888 899999987 467666543211110 000011111 0 0011 11234444 56
Q ss_pred HHHHHHHHHHHH-hCCcEEEeccccCcccccccchHHHHHHHHh
Q 012077 175 KSIKNKIDYCRV-HGLEIFYSTALLDAEMAGFWAKLPLIRNLLL 217 (471)
Q Consensus 175 ksikNk~~YAr~-HGY~~~~~~~~ld~~~~~~WaKip~IR~aL~ 217 (471)
..+.||..|-+. .||++|++...+|.+ .|.=+.++|+.+.
T Consensus 111 AMfanRm~~lr~~lGYdlfi~~~~LDR~---~~eFv~Llr~~~a 151 (152)
T PF11201_consen 111 AMFANRMQYLRQLLGYDLFIPASDLDRD---PEEFVGLLRRYQA 151 (152)
T ss_pred HHHHHHHHHHHHhcCceEEeEhhhccCC---HHHHHHHHHHHHh
Confidence 778899999865 699999987777633 3555667777653
No 46
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.84 E-value=2.3e+02 Score=28.34 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=19.9
Q ss_pred hhHHHHHHhhccceehhhhhhHHHhhhccccccCCCCC
Q 012077 9 QRSRKFHRALRQCKVTALCLVLTVVVLRGIIGAGEFGT 46 (471)
Q Consensus 9 ~~~~~~~~~~~~~k~t~~c~~~t~~vlrgt~~~~~~~~ 46 (471)
.+.|+.-+.|| |.|...+|+|+|+-+.+=.|....
T Consensus 7 ~KrRK~N~iLN---iaI~IV~lLIiiva~~lf~~~~~~ 41 (217)
T PF07423_consen 7 QKRRKTNKILN---IAIGIVSLLIIIVAYQLFFGGDDS 41 (217)
T ss_pred HHhhhhhhhHH---HHHHHHHHHHHHHhhhheecCCCc
Confidence 34566666665 445555566666666665544433
No 47
>PLN03153 hypothetical protein; Provisional
Probab=21.27 E-value=76 Score=35.64 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.0
Q ss_pred HHHHHhc-CCCccEEEEeeCCceee
Q 012077 212 IRNLLLG-HPEVEFLWWMDSDAMFT 235 (471)
Q Consensus 212 IR~aL~a-~PeaEWIwWLDsDAlIm 235 (471)
+.+++.. .|+++|+.++|.|++|.
T Consensus 200 v~et~~~~~pd~kWfVf~DDDTyf~ 224 (537)
T PLN03153 200 VLESFRLGLPDVRWFVLGDDDTIFN 224 (537)
T ss_pred HHHHHHhhCCCCCEEEEecCCcccc
Confidence 4444444 49999999999999996
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.75 E-value=1.1e+02 Score=25.91 Aligned_cols=31 Identities=3% Similarity=-0.032 Sum_probs=22.4
Q ss_pred cchHHHHHHHHhcCCCccEEEEeeCCceeecCC
Q 012077 206 WAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMT 238 (471)
Q Consensus 206 WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~ 238 (471)
..+..++..++.. -+.+||+++|+|..+. ++
T Consensus 60 ~g~~~a~n~~~~~-~~~~~i~~~D~D~~~~-~~ 90 (166)
T cd04186 60 LGFGAGNNQGIRE-AKGDYVLLLNPDTVVE-PG 90 (166)
T ss_pred cChHHHhhHHHhh-CCCCEEEEECCCcEEC-cc
Confidence 4455666666654 3789999999998864 44
No 49
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.33 E-value=1e+02 Score=28.12 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=23.7
Q ss_pred cccchHHHHHHHHhcCCCccEEEEeeCCceeecCCC
Q 012077 204 GFWAKLPLIRNLLLGHPEVEFLWWMDSDAMFTDMTF 239 (471)
Q Consensus 204 ~~WaKip~IR~aL~a~PeaEWIwWLDsDAlImNp~~ 239 (471)
....|...+...+. +...|||+++|+|+++. ++.
T Consensus 66 ~~~g~~~a~n~g~~-~~~~d~i~~~D~D~~~~-~~~ 99 (229)
T cd04192 66 SISGKKNALTTAIK-AAKGDWIVTTDADCVVP-SNW 99 (229)
T ss_pred ccchhHHHHHHHHH-HhcCCEEEEECCCcccC-HHH
Confidence 34556666666654 35789999999999774 443
Done!