Query 012078
Match_columns 471
No_of_seqs 171 out of 1188
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 21:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 3.4E-41 1.2E-45 301.8 6.2 122 5-126 4-129 (134)
2 2crr_A Stromal membrane-associ 100.0 6.9E-41 2.4E-45 302.1 5.9 121 7-127 8-132 (141)
3 2olm_A Nucleoporin-like protei 100.0 2.8E-39 9.5E-44 291.3 9.8 119 7-126 4-129 (140)
4 3jue_A Arfgap with coiled-coil 100.0 2.1E-35 7.1E-40 297.4 7.4 118 10-127 27-152 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 4.9E-35 1.7E-39 298.1 10.0 120 7-127 13-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 1.6E-34 5.3E-39 260.0 7.0 108 14-121 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.7E-34 9.2E-39 261.3 4.6 93 12-104 13-106 (149)
8 3dwd_A ADP-ribosylation factor 100.0 2.6E-33 9E-38 254.1 8.5 113 12-124 22-145 (147)
9 2p57_A GTPase-activating prote 100.0 6.5E-32 2.2E-36 244.5 7.4 108 12-119 21-130 (144)
10 3sub_A ADP-ribosylation factor 100.0 8.1E-32 2.8E-36 247.7 6.6 110 11-120 4-115 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 1.3E-30 4.4E-35 252.8 9.5 119 7-125 21-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 5E-31 1.7E-35 270.6 6.8 118 9-126 4-129 (497)
13 1dcq_A PYK2-associated protein 100.0 3.1E-30 1.1E-34 247.1 8.2 114 13-126 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 1.5E-28 5.3E-33 242.8 7.3 91 11-101 20-110 (329)
15 1u5k_A Hypothetical protein; O 83.3 0.87 3E-05 42.9 4.0 76 25-117 147-222 (244)
16 1gnf_A Transcription factor GA 70.9 1.4 4.7E-05 32.8 1.1 38 26-63 2-40 (46)
17 2vut_I AREA, nitrogen regulato 62.7 2.3 8E-05 31.1 0.9 35 29-63 2-37 (43)
18 3dfx_A Trans-acting T-cell-spe 60.3 2.8 9.6E-05 33.0 1.1 39 25-63 4-43 (63)
19 1tjl_A DNAK suppressor protein 55.3 3.6 0.00012 37.2 1.0 35 25-59 108-143 (151)
20 4gat_A Nitrogen regulatory pro 54.7 3.9 0.00013 32.4 1.0 38 26-63 7-45 (66)
21 4hc9_A Trans-acting T-cell-spe 51.3 4 0.00014 35.4 0.6 36 28-63 5-41 (115)
22 2kgo_A Uncharacterized protein 41.6 3.4 0.00011 35.8 -1.3 33 27-59 55-88 (108)
23 2kae_A GATA-type transcription 40.0 5.1 0.00017 32.3 -0.4 36 27-63 7-45 (71)
24 1d4u_A Nucleotide excision rep 33.6 5.9 0.0002 34.3 -1.1 32 27-58 4-36 (111)
25 3iz6_N 40S ribosomal protein S 30.1 27 0.00092 26.9 2.2 39 26-69 16-54 (56)
26 1ffk_W Ribosomal protein L37AE 29.8 17 0.00057 29.4 1.0 41 14-56 12-53 (73)
27 3dzy_D Peroxisome proliferator 24.9 21 0.00072 36.5 1.0 31 26-59 48-78 (419)
28 3g9m_A Glucocorticoid receptor 23.6 16 0.00054 30.1 -0.2 30 27-59 1-30 (90)
29 4hc9_A Trans-acting T-cell-spe 22.9 28 0.00097 30.0 1.3 38 26-63 57-95 (115)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.4e-41 Score=301.81 Aligned_cols=122 Identities=49% Similarity=0.917 Sum_probs=107.5
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHH
Q 012078 5 ANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFI 84 (471)
Q Consensus 5 ~~~sk~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~L 84 (471)
+..|++..++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||+|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCchHHHHHHhhcCCCCCC----hhHHHHHHHHHhhhcccccCC
Q 012078 85 QSMGNEKANSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRD 126 (471)
Q Consensus 85 q~~GN~~aN~iwEa~lPp~~d----~~~~e~FIraKY~eKrFv~~~ 126 (471)
+.+||.++|.|||+++|+.+. ...+|+|||+||++|+|+.+.
T Consensus 84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCc
Confidence 999999999999999986542 346899999999999999764
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.9e-41 Score=302.06 Aligned_cols=121 Identities=51% Similarity=0.987 Sum_probs=112.7
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHh
Q 012078 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (471)
Q Consensus 7 ~sk~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~ 86 (471)
..++++++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||+|++++|++|+.
T Consensus 8 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 8 KAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp CTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCchHHHHHHhhcCCCCCC----hhHHHHHHHHHhhhcccccCCC
Q 012078 87 MGNEKANSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRDG 127 (471)
Q Consensus 87 ~GN~~aN~iwEa~lPp~~d----~~~~e~FIraKY~eKrFv~~~~ 127 (471)
+||.++|.|||+++|+.+. ...+|+|||+||++|+|+.+..
T Consensus 88 ~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 88 MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGG
T ss_pred HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999987542 3468999999999999997653
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=2.8e-39 Score=291.30 Aligned_cols=119 Identities=31% Similarity=0.698 Sum_probs=109.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHh
Q 012078 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (471)
Q Consensus 7 ~sk~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~ 86 (471)
.+++++++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+| |+||||+||+|++++|++|+.
T Consensus 4 ~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 4 AKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred hCchHHHHHHhhcCCC-------CCChhHHHHHHHHHhhhcccccCC
Q 012078 87 MGNEKANSYWEAELPP-------NYDRVGIENFIRAKYEEKRWVSRD 126 (471)
Q Consensus 87 ~GN~~aN~iwEa~lPp-------~~d~~~~e~FIraKY~eKrFv~~~ 126 (471)
+||.++|.|||+++++ ..+...+++|||+||++++|+.+.
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~ 129 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPP 129 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCH
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCc
Confidence 9999999999998753 224457889999999999999753
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=2.1e-35 Score=297.44 Aligned_cols=118 Identities=42% Similarity=0.759 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCc
Q 012078 10 ELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN 89 (471)
Q Consensus 10 ~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN 89 (471)
+.+++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||.|++++|++|+.+||
T Consensus 27 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn 106 (368)
T 3jue_A 27 REPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 106 (368)
T ss_dssp -----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCH
T ss_pred hhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHcc
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccCCC
Q 012078 90 EKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRDG 127 (471)
Q Consensus 90 ~~aN~iwEa~lPp~--------~d~~~~e~FIraKY~eKrFv~~~~ 127 (471)
.++|.|||+++|+. .++..+++|||+||++|+|+.+..
T Consensus 107 ~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 107 VIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 99999999998642 234578999999999999997643
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=4.9e-35 Score=298.09 Aligned_cols=120 Identities=42% Similarity=0.777 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHh
Q 012078 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (471)
Q Consensus 7 ~sk~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~ 86 (471)
-+++++++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+| +|||+||||+||+|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hCchHHHHHHhhcCCCCC------C-hhHHHHHHHHHhhhcccccCCC
Q 012078 87 MGNEKANSYWEAELPPNY------D-RVGIENFIRAKYEEKRWVSRDG 127 (471)
Q Consensus 87 ~GN~~aN~iwEa~lPp~~------d-~~~~e~FIraKY~eKrFv~~~~ 127 (471)
+||.++|.|||+++|+.. | ...+++|||+||++++|+..+.
T Consensus 92 ~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999997532 1 2458999999999999998754
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.6e-34 Score=259.99 Aligned_cols=108 Identities=32% Similarity=0.622 Sum_probs=98.3
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCchHHH
Q 012078 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKAN 93 (471)
Q Consensus 14 r~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN~~aN 93 (471)
..+++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+|+||+||+|||+||||+||+|++++|++|+.+||.++|
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC--CC-CChhHHHHHHHHHhhhcc
Q 012078 94 SYWEAELP--PN-YDRVGIENFIRAKYEEKR 121 (471)
Q Consensus 94 ~iwEa~lP--p~-~d~~~~e~FIraKY~eKr 121 (471)
+|||++.. +. ..+..++.||..||+++.
T Consensus 102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 102 NYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 99998543 22 234678999999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=261.33 Aligned_cols=93 Identities=41% Similarity=0.755 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCC-CCHHHHHHHHhhCch
Q 012078 12 NARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGNE 90 (471)
Q Consensus 12 ~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~-Wt~eeV~~Lq~~GN~ 90 (471)
.++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||. |++++|+.|+.+||.
T Consensus 13 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~ 92 (149)
T 2crw_A 13 KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhH
Confidence 4578999999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhcCCCCC
Q 012078 91 KANSYWEAELPPNY 104 (471)
Q Consensus 91 ~aN~iwEa~lPp~~ 104 (471)
++|+|||+++....
T Consensus 93 ~an~~~e~~~~~~~ 106 (149)
T 2crw_A 93 SASSFFHQHGCSTN 106 (149)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHhcCCCCc
Confidence 99999999987643
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.98 E-value=2.6e-33 Score=254.09 Aligned_cols=113 Identities=36% Similarity=0.676 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCchH
Q 012078 12 NARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEK 91 (471)
Q Consensus 12 ~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN~~ 91 (471)
++|++++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||+|++++|+.|+.+||.+
T Consensus 22 ~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~ 101 (147)
T 3dwd_A 22 SPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAK 101 (147)
T ss_dssp CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC--CCCCh---------hHHHHHHHHHhhhccccc
Q 012078 92 ANSYWEAELP--PNYDR---------VGIENFIRAKYEEKRWVS 124 (471)
Q Consensus 92 aN~iwEa~lP--p~~d~---------~~~e~FIraKY~eKrFv~ 124 (471)
+|+|||++.. +..+. ..+++-|+++++.+.|..
T Consensus 102 an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 102 FREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999998742 32221 125677788888777764
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=6.5e-32 Score=244.45 Aligned_cols=108 Identities=36% Similarity=0.706 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCC-CCHHHHHHHHhhCch
Q 012078 12 NARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGNE 90 (471)
Q Consensus 12 ~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~-Wt~eeV~~Lq~~GN~ 90 (471)
.++.+++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||. |++++|+.|+.+||.
T Consensus 21 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~ 100 (144)
T 2p57_A 21 KTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNA 100 (144)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHH
Confidence 3467899999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhcCCCCCC-hhHHHHHHHHHhhh
Q 012078 91 KANSYWEAELPPNYD-RVGIENFIRAKYEE 119 (471)
Q Consensus 91 ~aN~iwEa~lPp~~d-~~~~e~FIraKY~e 119 (471)
++|.|||++.-...+ +..+......+|.+
T Consensus 101 ~an~~~e~~g~~~~~~~~KY~s~aA~~Yr~ 130 (144)
T 2p57_A 101 NATAFFRQHGCTANDANTKYNSRAAQMYRE 130 (144)
T ss_dssp HHHHHHHHTTCCCCSHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCchhhccCcHHHHHHHH
Confidence 999999987543322 22233334444444
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=8.1e-32 Score=247.70 Aligned_cols=110 Identities=38% Similarity=0.667 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhcC-CCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCc
Q 012078 11 LNARHRKILEGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN 89 (471)
Q Consensus 11 ~~ar~ekiL~~Llk~-P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN 89 (471)
+++..+++|+.|++. |+|+.|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567889999999985 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCCh-hHHHHHHHHHhhhc
Q 012078 90 EKANSYWEAELPPNYDR-VGIENFIRAKYEEK 120 (471)
Q Consensus 90 ~~aN~iwEa~lPp~~d~-~~~e~FIraKY~eK 120 (471)
.++|.|||.+....... ..+..-.-.+|+++
T Consensus 84 ~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~ 115 (163)
T 3sub_A 84 KKCQTYLENYGISDFIPERKYRTKAADHYRKI 115 (163)
T ss_dssp HHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccChhhcCCCHHHHHHHHH
Confidence 99999999987655443 12233344555554
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.96 E-value=1.3e-30 Score=252.79 Aligned_cols=119 Identities=38% Similarity=0.678 Sum_probs=105.7
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHh
Q 012078 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (471)
Q Consensus 7 ~sk~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~ 86 (471)
.+...+++.+++|+.|++.|+|+.|+|||+++|+|+|+|||||+|++|+|+||.||+|||+|||++||.|+.++|.+|..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~ 100 (301)
T 2b0o_E 21 HDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN 100 (301)
T ss_dssp ------CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCchHHHHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccC
Q 012078 87 MGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 125 (471)
Q Consensus 87 ~GN~~aN~iwEa~lPp~--------~d~~~~e~FIraKY~eKrFv~~ 125 (471)
+||.++|.+||+.+|.. .+...+++||+.||++++|..+
T Consensus 101 ~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 101 MGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp CCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred cCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999988642 2345799999999999999764
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=5e-31 Score=270.59 Aligned_cols=118 Identities=38% Similarity=0.679 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhC
Q 012078 9 KELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMG 88 (471)
Q Consensus 9 k~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~G 88 (471)
..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+||+|||+||||+||.|+++++++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccCC
Q 012078 89 NEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 126 (471)
Q Consensus 89 N~~aN~iwEa~lPp~--------~d~~~~e~FIraKY~eKrFv~~~ 126 (471)
|..+|.+||+.+|.. .+...+++||++||++++|..+.
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 999999999998642 23457899999999999998753
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=3.1e-30 Score=247.06 Aligned_cols=114 Identities=37% Similarity=0.723 Sum_probs=105.3
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCchHH
Q 012078 13 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 92 (471)
Q Consensus 13 ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN~~a 92 (471)
++++++|+.|++.|+|+.|+|||+.+|+|+|+|||+|||++|+|+||+||+|||+|||++||.|+.+++..|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccCC
Q 012078 93 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 126 (471)
Q Consensus 93 N~iwEa~lPp~--------~d~~~~e~FIraKY~eKrFv~~~ 126 (471)
|+|||+.+|.. .+...+++||+.||+.++|..+.
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999988632 24567899999999999998653
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=242.80 Aligned_cols=91 Identities=41% Similarity=0.760 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCch
Q 012078 11 LNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNE 90 (471)
Q Consensus 11 ~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN~ 90 (471)
.+.+++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+|+||+||+|||+||||+||+|++++|+.|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 012078 91 KANSYWEAELP 101 (471)
Q Consensus 91 ~aN~iwEa~lP 101 (471)
++|++||+...
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=83.30 E-value=0.87 Score=42.86 Aligned_cols=76 Identities=20% Similarity=0.479 Sum_probs=47.9
Q ss_pred CCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCchHHHHHHhhcCCCCC
Q 012078 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNY 104 (471)
Q Consensus 25 ~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN~~aN~iwEa~lPp~~ 104 (471)
.|.-..|+.||..+..|.+...|.++|..|...+ .++.+++..|+.+-+.....+..-.+++.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~~~~~~~~~- 209 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRASFEQPVPSA- 209 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHHHHSCCCGG-
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHHhhCCCCHH-
Confidence 3566799999998777889999999999995321 35688888887664443333333333322
Q ss_pred ChhHHHHHHHHHh
Q 012078 105 DRVGIENFIRAKY 117 (471)
Q Consensus 105 d~~~~e~FIraKY 117 (471)
.....+++++.=|
T Consensus 210 ~~~~~~~ll~~~~ 222 (244)
T 1u5k_A 210 DRPALWRALEKFV 222 (244)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2233444444433
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=70.90 E-value=1.4 Score=32.76 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=32.1
Q ss_pred CCCCCCcCCCCC-CCCceecchhHHHhHhhhhhhhcCCC
Q 012078 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (471)
Q Consensus 26 P~Nk~CADCGa~-~P~WaSvn~GVFLC~~CSgIHR~LG~ 63 (471)
.+.+.|.+|+.. -|.|=.-..|..||-.|.-.++..|.
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 357899999987 67899988999999999888877664
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=62.67 E-value=2.3 Score=31.05 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.2
Q ss_pred CCCcCCCCC-CCCceecchhHHHhHhhhhhhhcCCC
Q 012078 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (471)
Q Consensus 29 k~CADCGa~-~P~WaSvn~GVFLC~~CSgIHR~LG~ 63 (471)
+.|.+|+.. -|.|=.-..|-.||-.|.-..|.-|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999987 67899999999999999887766553
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=60.34 E-value=2.8 Score=33.03 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCCCCCCcCCCCC-CCCceecchhHHHhHhhhhhhhcCCC
Q 012078 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (471)
Q Consensus 25 ~P~Nk~CADCGa~-~P~WaSvn~GVFLC~~CSgIHR~LG~ 63 (471)
......|.+|+.. -|.|=.-..|-.||-.|.-.++..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999987 67999999999999999887776654
No 19
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=55.32 E-value=3.6 Score=37.18 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCCCCCCcCCCCCCCC-ceecchhHHHhHhhhhhhh
Q 012078 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (471)
Q Consensus 25 ~P~Nk~CADCGa~~P~-WaSvn~GVFLC~~CSgIHR 59 (471)
...-.+|.+||.+=|. -.-.--++-+|+.|...|.
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 4566799999987331 1122335678999998764
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=54.69 E-value=3.9 Score=32.42 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=31.9
Q ss_pred CCCCCCcCCCCC-CCCceecchhHHHhHhhhhhhhcCCC
Q 012078 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (471)
Q Consensus 26 P~Nk~CADCGa~-~P~WaSvn~GVFLC~~CSgIHR~LG~ 63 (471)
.+...|++|+.. -|.|-.-..|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999986 78999999999999999887776554
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=51.32 E-value=4 Score=35.36 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.4
Q ss_pred CCCCcCCCCC-CCCceecchhHHHhHhhhhhhhcCCC
Q 012078 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (471)
Q Consensus 28 Nk~CADCGa~-~P~WaSvn~GVFLC~~CSgIHR~LG~ 63 (471)
-+.|++||+. -|.|-.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999986 78999889999999999877765443
No 22
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=41.63 E-value=3.4 Score=35.78 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=22.0
Q ss_pred CCCCCcCCCCCCC-CceecchhHHHhHhhhhhhh
Q 012078 27 ENRECADCKAKGP-RWASVNLGIFICMQCSGIHR 59 (471)
Q Consensus 27 ~Nk~CADCGa~~P-~WaSvn~GVFLC~~CSgIHR 59 (471)
.--.|.+||.+=| .-.-.--++.+|+.|...+.
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 3569999998733 11222335678999998764
No 23
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=40.01 E-value=5.1 Score=32.25 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=28.7
Q ss_pred CCCCCcCCCCC-CCCcee--cchhHHHhHhhhhhhhcCCC
Q 012078 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (471)
Q Consensus 27 ~Nk~CADCGa~-~P~WaS--vn~GVFLC~~CSgIHR~LG~ 63 (471)
....|.+|+.. -|.|=. -.-| .||-.|.-.++..+.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45789999986 779988 6777 799999888777654
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=33.61 E-value=5.9 Score=34.35 Aligned_cols=32 Identities=13% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCC-ceecchhHHHhHhhhhhh
Q 012078 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGIH 58 (471)
Q Consensus 27 ~Nk~CADCGa~~P~-WaSvn~GVFLC~~CSgIH 58 (471)
+.-.|.+||...-. |..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45679999987433 345699999999998653
No 25
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=30.11 E-value=27 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=28.8
Q ss_pred CCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceee
Q 012078 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69 (471)
Q Consensus 26 P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVK 69 (471)
++-+.|.-||.+.--+ =.||..+|-.|- |++...|.+||
T Consensus 16 ~g~~rC~vcGr~~g~i--RkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHGLI--RKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCCCT--TTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcccc--cccCCcHHHHHH---HHHHHhcCcee
Confidence 5678999999875433 389999999996 66666666654
No 26
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=29.78 E-value=17 Score=29.42 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=31.6
Q ss_pred HHHHHHHHh-hcCCCCCCCcCCCCCCCCceecchhHHHhHhhhh
Q 012078 14 RHRKILEGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 56 (471)
Q Consensus 14 r~ekiL~~L-lk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSg 56 (471)
..|+.+.++ ........|.-||.....+.. .||+.|..|.-
T Consensus 12 slRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 12 KIRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred hHHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 456666777 567888999999987776664 59999999954
No 27
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=24.88 E-value=21 Score=36.46 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=24.9
Q ss_pred CCCCCCcCCCCCCCCceecchhHHHhHhhhhhhh
Q 012078 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (471)
Q Consensus 26 P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR 59 (471)
..+..|.=||..... ..|||+.|..|++..|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 346789999987654 4899999999999876
No 28
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=23.60 E-value=16 Score=30.07 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.3
Q ss_pred CCCCCcCCCCCCCCceecchhHHHhHhhhhhhh
Q 012078 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (471)
Q Consensus 27 ~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR 59 (471)
|+..|.=||.... ...||++.|..|.+.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4678999997653 46899999999999876
No 29
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=22.94 E-value=28 Score=29.99 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCC-CCCceecchhHHHhHhhhhhhhcCCC
Q 012078 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (471)
Q Consensus 26 P~Nk~CADCGa~-~P~WaSvn~GVFLC~~CSgIHR~LG~ 63 (471)
.....|++|+.. -|.|-.-..|-.||-.|.-.++..|.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 457899999986 78999999998999999887776654
Done!