BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012079
         (471 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1CB55|DBP7_ASPCL ATP-dependent RNA helicase dbp7 OS=Aspergillus clavatus (strain
           ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
           GN=dbp7 PE=3 SV=1
          Length = 755

 Score = 34.7 bits (78), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 202 SLSKRKVNCSSQVAAAPSPDLFEVTMCQVKESSKSFTLQLLSLMRAAHWDIAAAV 256
           +LSK   + + Q        LF + +   +E  K  ++ L SL+R AHW +A  V
Sbjct: 202 TLSKPTTDATGQPIVHRDSGLFAIVLAPTRELCKQISVVLESLLRCAHWIVAGTV 256


>sp|Q2K6L3|UGPC1_RHIEC sn-glycerol-3-phosphate import ATP-binding protein UgpC 1
           OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ugpC1
           PE=3 SV=1
          Length = 347

 Score = 33.5 bits (75), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 101 LQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAA- 159
           L+    P      R+AD A   ++ +IG   ER + R   GG+R     G A+VR+ AA 
Sbjct: 100 LKNRRVPRHEINRRIADAA---DILEIGEFLER-RPRQLSGGQRQRVAMGRAIVRDPAAF 155

Query: 160 PYEAAVAELKRELKAR-EVEVDNLKEKLKTVT 190
            ++  ++ L  +L+ R  VE+  L+ +LKT +
Sbjct: 156 LFDEPLSNLDAKLRVRMRVEIRRLQRQLKTTS 187


>sp|Q75A33|PPID_ASHGO Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii (strain
           ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
           GN=CPR6 PE=3 SV=1
          Length = 369

 Score = 33.1 bits (74), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 23  PLANVRQDSQNVAVEEYGEQNDDDCNDSSEEDDEEEET-----KVRGTDNSSKVVSIERV 77
           PLA+VR D+  +    Y    D +   + E  D+ EET     KV   D  S + ++E V
Sbjct: 162 PLADVRIDACGILPASYEVPADAEATPADEYGDDYEETLADDAKVDLADPRSVIRAVEAV 221

Query: 78  MELETVMNEV--FD-AVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELR 125
             + T   +   FD AV    +A   LQE    + P+ +  ADVA + +L+
Sbjct: 222 KAIGTAQLQAARFDVAVQKYAKAAGFLQE----YFPDDLPDADVAALEQLK 268


>sp|Q1M589|UGPC3_RHIL3 sn-glycerol-3-phosphate import ATP-binding protein UgpC 3
           OS=Rhizobium leguminosarum bv. viciae (strain 3841)
           GN=ugpC3 PE=3 SV=1
          Length = 348

 Score = 32.7 bits (73), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 6/79 (7%)

Query: 114 RVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAA-PYEAAVAELKREL 172
           RVA+ A   E+ +IG + +R K R   GG+R     G A+VRE AA  ++  ++ L  +L
Sbjct: 113 RVAEAA---EILEIGPMLDR-KPRELSGGQRQRVAMGRAIVREPAAFLFDEPLSNLDAKL 168

Query: 173 KAR-EVEVDNLKEKLKTVT 190
           + +  VE+  L+ +LKT +
Sbjct: 169 RVQMRVEIRRLQRRLKTTS 187


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,635,718
Number of Sequences: 539616
Number of extensions: 6953995
Number of successful extensions: 41290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 40282
Number of HSP's gapped (non-prelim): 614
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)