Query 012079
Match_columns 471
No_of_seqs 119 out of 137
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:24:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04859 DUF641: Plant protein 100.0 1.3E-43 2.8E-48 317.8 14.3 127 73-199 3-130 (131)
2 PF01025 GrpE: GrpE; InterPro 88.2 0.74 1.6E-05 42.3 4.7 56 411-468 109-164 (165)
3 COG2433 Uncharacterized conser 78.9 20 0.00044 40.5 11.5 92 72-193 419-511 (652)
4 PRK14150 heat shock protein Gr 76.9 3 6.4E-05 40.5 3.9 55 411-468 137-192 (193)
5 COG0576 GrpE Molecular chapero 72.6 4.1 8.8E-05 39.5 3.7 54 411-467 135-189 (193)
6 PF08614 ATG16: Autophagy prot 70.5 6.3 0.00014 37.7 4.4 106 85-193 27-146 (194)
7 PRK14140 heat shock protein Gr 69.9 5.4 0.00012 38.8 3.9 53 412-467 136-189 (191)
8 PRK14151 heat shock protein Gr 68.5 6.8 0.00015 37.6 4.2 55 411-468 119-174 (176)
9 PRK10869 recombination and rep 68.1 62 0.0013 36.1 12.1 115 87-249 263-387 (553)
10 cd00446 GrpE GrpE is the adeni 67.1 6.2 0.00013 35.7 3.5 52 411-465 83-135 (137)
11 PRK14158 heat shock protein Gr 66.0 8.4 0.00018 37.6 4.3 55 412-468 138-193 (194)
12 PRK14148 heat shock protein Gr 65.7 7.3 0.00016 38.1 3.8 55 411-468 138-193 (195)
13 TIGR00634 recN DNA repair prot 64.7 1.7E+02 0.0037 32.5 14.6 26 225-250 367-393 (563)
14 PRK14162 heat shock protein Gr 64.6 8.9 0.00019 37.5 4.2 55 412-468 138-193 (194)
15 PRK11448 hsdR type I restricti 64.5 38 0.00082 41.1 10.1 106 78-189 103-210 (1123)
16 PRK14154 heat shock protein Gr 64.4 11 0.00024 37.2 4.8 56 411-468 151-207 (208)
17 PRK10325 heat shock protein Gr 63.8 6.6 0.00014 38.3 3.2 55 411-468 138-193 (197)
18 PRK11546 zraP zinc resistance 62.4 41 0.0009 31.5 7.9 73 102-187 38-113 (143)
19 PRK14160 heat shock protein Gr 62.2 11 0.00023 37.4 4.3 53 412-468 157-210 (211)
20 COG0497 RecN ATPase involved i 61.2 27 0.00058 39.3 7.6 45 89-137 266-319 (557)
21 PF05984 Cytomega_UL20A: Cytom 61.1 4 8.7E-05 35.2 1.0 16 394-409 1-16 (100)
22 PRK14144 heat shock protein Gr 61.0 11 0.00025 36.9 4.2 54 412-468 143-197 (199)
23 PF14584 DUF4446: Protein of u 60.7 43 0.00094 31.4 7.8 65 119-191 17-81 (151)
24 PRK14141 heat shock protein Gr 60.4 9.9 0.00021 37.6 3.7 55 412-469 136-191 (209)
25 PF12709 Kinetocho_Slk19: Cent 59.4 31 0.00066 29.9 6.0 33 159-191 45-77 (87)
26 PRK14153 heat shock protein Gr 58.5 16 0.00034 35.8 4.7 56 411-469 131-187 (194)
27 PRK14147 heat shock protein Gr 58.2 12 0.00026 35.8 3.8 55 411-468 114-169 (172)
28 PRK14145 heat shock protein Gr 58.0 12 0.00027 36.6 3.9 53 412-467 141-194 (196)
29 COG5185 HEC1 Protein involved 57.7 1.9E+02 0.004 32.5 12.9 98 80-192 262-359 (622)
30 TIGR02231 conserved hypothetic 56.0 1.2E+02 0.0027 33.1 11.6 42 151-192 126-167 (525)
31 PF04859 DUF641: Plant protein 55.4 90 0.0019 28.9 8.8 90 75-185 41-130 (131)
32 PF08317 Spc7: Spc7 kinetochor 54.7 1.4E+02 0.003 31.0 11.1 109 76-192 143-259 (325)
33 PRK14161 heat shock protein Gr 54.7 21 0.00046 34.3 4.9 56 412-469 120-176 (178)
34 PRK14155 heat shock protein Gr 54.4 20 0.00044 35.3 4.8 57 411-469 114-171 (208)
35 PF11559 ADIP: Afadin- and alp 53.7 1.4E+02 0.003 27.2 9.8 93 81-187 58-150 (151)
36 PF08317 Spc7: Spc7 kinetochor 52.6 1.6E+02 0.0035 30.5 11.2 24 112-135 160-183 (325)
37 PRK14139 heat shock protein Gr 52.0 21 0.00046 34.6 4.4 55 411-469 128-183 (185)
38 COG4913 Uncharacterized protei 50.3 1E+02 0.0023 36.1 9.9 109 75-194 623-736 (1104)
39 smart00787 Spc7 Spc7 kinetocho 49.8 2.8E+02 0.0061 29.0 12.5 50 77-134 139-188 (312)
40 PRK14146 heat shock protein Gr 48.8 20 0.00044 35.5 3.8 49 419-468 159-211 (215)
41 PF12329 TMF_DNA_bd: TATA elem 48.0 88 0.0019 25.9 6.9 34 153-186 37-70 (74)
42 PF05529 Bap31: B-cell recepto 47.8 47 0.001 31.5 6.0 36 156-191 154-189 (192)
43 PF10112 Halogen_Hydrol: 5-bro 47.6 1.1E+02 0.0023 29.3 8.4 52 75-141 101-152 (199)
44 PF12325 TMF_TATA_bd: TATA ele 47.6 27 0.00058 31.7 4.1 30 163-192 16-45 (120)
45 PRK09039 hypothetical protein; 47.5 1.3E+02 0.0028 31.7 9.6 13 125-137 123-135 (343)
46 PF03980 Nnf1: Nnf1 ; InterPr 47.3 1.3E+02 0.0027 26.1 8.1 45 146-190 63-107 (109)
47 COG1382 GimC Prefoldin, chaper 45.6 61 0.0013 29.6 6.0 72 121-193 43-114 (119)
48 PF03962 Mnd1: Mnd1 family; I 45.1 1.2E+02 0.0026 29.2 8.4 34 159-192 65-98 (188)
49 PRK14143 heat shock protein Gr 44.8 25 0.00053 35.4 3.7 55 411-468 166-221 (238)
50 PF15290 Syntaphilin: Golgi-lo 44.2 36 0.00078 35.3 4.8 69 158-248 70-139 (305)
51 PRK14163 heat shock protein Gr 42.9 21 0.00046 35.5 2.9 55 412-469 132-187 (214)
52 PF04102 SlyX: SlyX; InterPro 42.9 77 0.0017 25.7 5.7 46 151-196 6-51 (69)
53 PF05983 Med7: MED7 protein; 42.8 45 0.00097 31.5 5.0 87 74-191 71-159 (162)
54 PRK14142 heat shock protein Gr 41.1 33 0.00071 34.4 3.9 49 419-468 132-181 (223)
55 PF09403 FadA: Adhesion protei 41.1 67 0.0015 29.5 5.6 34 151-184 88-121 (126)
56 PRK14159 heat shock protein Gr 41.0 39 0.00086 32.5 4.3 45 420-467 129-174 (176)
57 PF14555 UBA_4: UBA-like domai 40.9 25 0.00055 25.7 2.4 21 240-260 17-37 (43)
58 cd00632 Prefoldin_beta Prefold 40.4 71 0.0015 27.6 5.5 39 152-190 66-104 (105)
59 PF10211 Ax_dynein_light: Axon 39.3 2.4E+02 0.0052 27.2 9.4 35 82-116 84-118 (189)
60 PF02050 FliJ: Flagellar FliJ 38.6 2.1E+02 0.0046 23.6 8.0 73 120-193 17-89 (123)
61 PF09726 Macoilin: Transmembra 37.6 2.5E+02 0.0055 32.6 10.7 41 152-192 541-581 (697)
62 KOG0804 Cytoplasmic Zn-finger 37.6 1E+02 0.0023 34.0 7.2 116 74-192 331-450 (493)
63 PF00170 bZIP_1: bZIP transcri 37.6 83 0.0018 24.7 5.0 36 156-191 26-61 (64)
64 PRK14157 heat shock protein Gr 37.5 39 0.00085 33.9 3.8 48 419-468 175-223 (227)
65 PF10205 KLRAQ: Predicted coil 37.3 28 0.00062 30.9 2.5 40 157-196 20-59 (102)
66 TIGR02338 gimC_beta prefoldin, 36.2 80 0.0017 27.6 5.2 70 119-189 38-107 (110)
67 PRK14149 heat shock protein Gr 35.4 60 0.0013 31.8 4.6 53 412-468 135-188 (191)
68 KOG2264 Exostosin EXT1L [Signa 33.9 65 0.0014 36.7 5.1 39 151-189 102-140 (907)
69 KOG2391 Vacuolar sorting prote 33.7 1.9E+02 0.0041 31.0 8.2 41 151-191 241-281 (365)
70 PRK00736 hypothetical protein; 33.6 1.2E+02 0.0026 24.8 5.4 42 151-192 7-48 (68)
71 KOG2189 Vacuolar H+-ATPase V0 32.9 1.5E+02 0.0032 35.0 7.8 79 113-192 44-128 (829)
72 smart00338 BRLZ basic region l 32.2 1.1E+02 0.0024 24.0 5.0 32 158-189 28-59 (65)
73 PF08826 DMPK_coil: DMPK coile 30.8 1.5E+02 0.0033 24.0 5.5 32 160-191 29-60 (61)
74 PRK04325 hypothetical protein; 30.7 1.4E+02 0.003 24.8 5.4 42 151-192 11-52 (74)
75 PRK00295 hypothetical protein; 30.3 1.5E+02 0.0032 24.2 5.4 42 151-192 7-48 (68)
76 PRK04406 hypothetical protein; 30.0 1.4E+02 0.0031 24.9 5.4 41 151-191 13-53 (75)
77 KOG4552 Vitamin-D-receptor int 30.0 85 0.0018 31.6 4.7 31 161-191 72-102 (272)
78 COG4026 Uncharacterized protei 29.8 1.6E+02 0.0034 30.0 6.6 95 83-197 74-183 (290)
79 COG2433 Uncharacterized conser 29.4 85 0.0018 35.8 5.1 38 154-191 420-457 (652)
80 PF04508 Pox_A_type_inc: Viral 29.3 74 0.0016 21.3 2.8 21 171-191 2-22 (23)
81 TIGR01010 BexC_CtrB_KpsE polys 29.1 6.6E+02 0.014 26.0 13.5 56 79-134 174-230 (362)
82 PF07106 TBPIP: Tat binding pr 29.0 1.7E+02 0.0038 27.1 6.5 82 98-197 59-143 (169)
83 PF06785 UPF0242: Uncharacteri 28.0 78 0.0017 33.8 4.3 120 154-306 178-299 (401)
84 PF06818 Fez1: Fez1; InterPro 27.8 79 0.0017 31.3 4.1 40 158-197 12-51 (202)
85 PRK10884 SH3 domain-containing 27.7 1.2E+02 0.0025 30.0 5.3 44 153-196 122-165 (206)
86 PRK11637 AmiB activator; Provi 27.6 7.8E+02 0.017 26.3 12.5 11 418-428 366-376 (428)
87 KOG3759 Uncharacterized RUN do 27.4 4E+02 0.0087 29.9 9.5 168 75-263 64-250 (621)
88 PF05377 FlaC_arch: Flagella a 27.3 1E+02 0.0022 24.7 3.8 26 166-191 3-28 (55)
89 PF12329 TMF_DNA_bd: TATA elem 26.9 1.6E+02 0.0034 24.4 5.1 35 158-192 28-62 (74)
90 smart00338 BRLZ basic region l 26.8 1.7E+02 0.0036 23.0 5.1 36 151-186 28-63 (65)
91 PRK02793 phi X174 lysis protei 26.7 1.8E+02 0.0039 24.0 5.4 42 151-192 10-51 (72)
92 PRK14164 heat shock protein Gr 26.7 64 0.0014 32.2 3.3 46 419-468 169-215 (218)
93 PF04977 DivIC: Septum formati 26.5 1.6E+02 0.0035 23.3 5.1 33 159-191 20-52 (80)
94 PRK14156 heat shock protein Gr 26.4 86 0.0019 30.3 4.0 45 422-467 130-175 (177)
95 PRK00846 hypothetical protein; 26.3 1.8E+02 0.0039 24.6 5.4 43 151-193 15-57 (77)
96 PF07851 TMPIT: TMPIT-like pro 26.1 2.8E+02 0.006 29.5 8.0 75 89-188 4-79 (330)
97 PRK03598 putative efflux pump 25.6 6.4E+02 0.014 25.6 10.4 45 93-137 89-133 (331)
98 cd00890 Prefoldin Prefoldin is 25.5 1.7E+02 0.0036 25.4 5.4 37 153-189 91-127 (129)
99 TIGR02209 ftsL_broad cell divi 25.3 1.8E+02 0.0039 23.6 5.3 37 155-191 23-59 (85)
100 KOG0995 Centromere-associated 25.3 1.2E+02 0.0026 34.4 5.3 40 152-191 283-322 (581)
101 PF01920 Prefoldin_2: Prefoldi 25.0 1.2E+02 0.0026 25.4 4.3 34 154-187 67-100 (106)
102 PF09726 Macoilin: Transmembra 25.0 2.3E+02 0.005 32.9 7.7 45 149-193 612-659 (697)
103 COG5124 Protein predicted to b 25.0 6.9E+02 0.015 24.8 9.7 113 158-306 77-199 (209)
104 PF00170 bZIP_1: bZIP transcri 24.6 2.1E+02 0.0046 22.4 5.4 35 151-185 28-62 (64)
105 PRK02119 hypothetical protein; 24.5 2.1E+02 0.0045 23.7 5.4 41 151-191 11-51 (73)
106 PF12761 End3: Actin cytoskele 24.3 7.1E+02 0.015 24.7 9.9 95 73-184 101-195 (195)
107 TIGR02473 flagell_FliJ flagell 24.3 1.6E+02 0.0034 25.9 5.0 79 119-197 31-109 (141)
108 TIGR02680 conserved hypothetic 23.2 3.6E+02 0.0077 33.7 9.3 34 87-120 816-853 (1353)
109 PF08172 CASP_C: CASP C termin 23.1 83 0.0018 31.8 3.4 43 152-197 85-127 (248)
110 PRK13729 conjugal transfer pil 23.0 3.5E+02 0.0075 30.2 8.2 28 162-189 96-123 (475)
111 PF06698 DUF1192: Protein of u 22.8 1.2E+02 0.0026 24.5 3.5 23 166-188 24-46 (59)
112 PF04201 TPD52: Tumour protein 21.9 1.4E+02 0.0029 28.8 4.3 35 152-186 32-66 (162)
113 COG1730 GIM5 Predicted prefold 21.8 2.2E+02 0.0048 26.8 5.6 40 152-191 97-136 (145)
114 PHA02562 46 endonuclease subun 21.4 7.5E+02 0.016 26.8 10.5 97 74-192 298-394 (562)
115 PRK14127 cell division protein 21.2 1.7E+02 0.0038 26.2 4.6 36 154-193 32-67 (109)
116 PF14817 HAUS5: HAUS augmin-li 21.1 9.9E+02 0.021 27.7 11.6 43 222-268 135-177 (632)
117 KOG0963 Transcription factor/C 21.0 1.4E+02 0.0031 34.1 4.9 35 154-188 308-342 (629)
118 PF11995 DUF3490: Domain of un 20.8 1.6E+02 0.0034 28.3 4.5 63 122-185 42-104 (161)
119 PF14362 DUF4407: Domain of un 20.3 9E+02 0.019 24.4 11.6 45 144-188 177-225 (301)
No 1
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=100.00 E-value=1.3e-43 Score=317.83 Aligned_cols=127 Identities=32% Similarity=0.543 Sum_probs=122.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCC-ccCCCCch
Q 012079 73 SIERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGR-RCGGVSGG 151 (471)
Q Consensus 73 ~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~-~~~~~a~~ 151 (471)
..+++..|+++|++|||+||+||+||+|||+||+|||||+|++||++||+||++||+||++|++++.+++| .+.+.+++
T Consensus 3 ~~~~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~ 82 (131)
T PF04859_consen 3 EAQRAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEI 82 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccch
Confidence 35889999999999999999999999999999999999999999999999999999999999999999986 55788999
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCCCC
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGGKK 199 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~k~ 199 (471)
+|||++|+|||+++++||+|++.||+||..||++|+++...|.+++||
T Consensus 83 ~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999875
No 2
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=88.21 E-value=0.74 Score=42.32 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=34.9
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEEEEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIKARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVikcrVyLs 468 (471)
.+..+.+. |..|||.+||-|.....+. ..+..|.=.+.|||++|++.+-.++|-++
T Consensus 109 Gv~~i~~~-G~~FDp~~heav~~~~~~~-~~~~~I~~v~~~GY~~~~rvlRpA~V~V~ 164 (165)
T PF01025_consen 109 GVEEIEPV-GEPFDPNLHEAVETVPDPD-KEPGTIVEVVRPGYRLGGRVLRPAEVVVS 164 (165)
T ss_dssp TEEEE--T-SSB--TTTEEEEEEECSSS-S-CTBEEEECC-EEEETTEEEE-EEEEEE
T ss_pred CCEecCCC-CCCCCHHHheeheecCcCC-CCcCeEEEEEecCEEECCEEeeeeEEEec
Confidence 56667777 9999999999988643332 23456778899999999844445666543
No 3
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.95 E-value=20 Score=40.54 Aligned_cols=92 Identities=18% Similarity=0.330 Sum_probs=71.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHH-hhhHhHHHHhhcCCCCCCccCCCCc
Q 012079 72 VSIERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELR-KIGVLRERLKRRSFGGGRRCGGVSG 150 (471)
Q Consensus 72 ~~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~-~Ls~LK~~y~~~~~~~~~~~~~~a~ 150 (471)
+..++....+.-+.+|=.-++.||+---+|+ .-+.+|+ +|.++++..+.+..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k----------------~eie~L~~~l~~~~r~~~~~~~----------- 471 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELK----------------REIEKLESELERFRREVRDKVR----------- 471 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3446677788899999999999998777776 3366665 67888888775433
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
....++..+-.+.+|+.+|..+...|+.|+.+|.++...+
T Consensus 472 ---~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 472 ---KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233566677788999999999999999999999987654
No 4
>PRK14150 heat shock protein GrpE; Provisional
Probab=76.86 E-value=3 Score=40.52 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=38.1
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.+..+.+ .|..|||.++|-|.....+..+ ...|--.+-|||++|+ .||+ ++|.++
T Consensus 137 Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~-~gtI~~v~q~GY~l~d-rvLRpA~V~Vs 192 (193)
T PRK14150 137 GVEVVGP-VGEPFNPEVHQAISMQESEDHE-PNTVMMVMQKGYTLNG-RLLRPAMVMVS 192 (193)
T ss_pred CCeeeCC-CCCCCCHhHcceeeeeCCCCCC-cCEEEEEeeCCeEeCC-EEecceEEEeC
Confidence 3455554 5999999999999763333223 3456678899999999 5554 666654
No 5
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=72.61 E-value=4.1 Score=39.50 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=39.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEe
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 467 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyL 467 (471)
.+..+.+ .|..|||.++|-|...+... .....|.-.+-.||++|+ .||+ +.|-+
T Consensus 135 Gv~~i~~-~Ge~FDP~~HeAv~~~~~~~-~~~~tVv~v~qkGY~l~d-RVLRpA~V~V 189 (193)
T COG0576 135 GVEEIGP-EGEKFDPNLHEAVQRVESED-VEPNTVVEVLQKGYKLND-RVLRPAMVKV 189 (193)
T ss_pred CCEEeCC-CCCCCCHHHhhheeeecCCC-CCCCeEEEEeecCeeeCC-EeccceEEEE
Confidence 4666777 89999999999988743332 234467778899999999 7775 44443
No 6
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.54 E-value=6.3 Score=37.73 Aligned_cols=106 Identities=19% Similarity=0.129 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHHHHHhh-------c-------CCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCc
Q 012079 85 NEVFDAVSAMKRAYVSLQEA-------H-------CPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSG 150 (471)
Q Consensus 85 ~~lFa~VSslKaAY~qLQ~A-------h-------~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~ 150 (471)
.+|++.++.++..=..||.. | .|-.+..+..-+..+..-- .+|-..|+.+.............
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~---~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQ---EELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc
Confidence 67888999999888888862 1 1122223333333333222 34455555543332222233445
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
.+.++..+...+..+..|++++..+..+|..|...|.+....+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777777777777777776665544
No 7
>PRK14140 heat shock protein GrpE; Provisional
Probab=69.95 E-value=5.4 Score=38.83 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=36.6
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEe
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 467 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyL 467 (471)
+..+- ..|..|||.++|-|........+ ...|.-.+-+||++|+ .||+ ++|-+
T Consensus 136 V~~i~-~~Ge~FDP~~HEAv~~~~~~~~~-~gtVv~V~qkGY~l~d-RVLRpA~V~V 189 (191)
T PRK14140 136 VEVIE-AVGEQFDPNLHQAVMQDEDEDFE-SNEVVEELQKGYKLKD-RVIRPSMVKV 189 (191)
T ss_pred CEeeC-CCCCCCChHHhccceeeCCCCCC-cCeEEEEeeCCeEeCC-EEecCcEEEe
Confidence 34443 46999999999998763333223 3456688899999999 6665 56654
No 8
>PRK14151 heat shock protein GrpE; Provisional
Probab=68.54 E-value=6.8 Score=37.58 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=38.5
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.+..+.. .|..|||.++|-|.....+..+ ...|.=.+-+||++|+ .||+ ++|-++
T Consensus 119 Gv~~i~~-~G~~FDP~~HEAv~~~~~~~~~-~gtI~~v~qkGY~l~d-RvLRpA~V~Va 174 (176)
T PRK14151 119 QLEAVDP-HGEPFNPEHHQAMAMQESADVE-PNSVLKVFQKGYLLNG-RLLRPAMVVVS 174 (176)
T ss_pred CCEEeCC-CCCCCCHHHhhcceeeCCCCCC-cCeEEEEeeCCcEECC-EEecCcEEEec
Confidence 4555655 6999999999999864333223 3456678899999999 5554 666554
No 9
>PRK10869 recombination and repair protein; Provisional
Probab=68.07 E-value=62 Score=36.11 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHHHHhHHHHHHHHHHhh---------cCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhh
Q 012079 87 VFDAVSAMKRAYVSLQEA---------HCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREV 157 (471)
Q Consensus 87 lFa~VSslKaAY~qLQ~A---------h~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~ 157 (471)
+-..+..+..+|.+||.+ ..-|||+.+. .|-+-|..|..|||.|... +..+
T Consensus 263 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~----~ie~Rl~~l~~L~rKyg~~----------------~~~~ 322 (553)
T PRK10869 263 LSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLA----ELEQRLSKQISLARKHHVS----------------PEEL 322 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH----HHHHHHHHHHHHHHHhCCC----------------HHHH
Confidence 344566677777777754 3477777764 3456677778888888643 2233
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCCCCCCCcccccccCCCCCCCCCChHHHHHHHHHHH-HHHHH
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGGKKGRSLSKRKVNCSSQVAAAPSPDLFEVTMCQVK-ESSKS 236 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~k~~~~~~~~~~~~~~~~~~~~sp~~F~~~l~~A~-~Si~~ 236 (471)
+.-++..-++|+ ++...+..+..|+++++++...-.. --..++.+| ++...
T Consensus 323 ~~~~~~l~~eL~-~L~~~e~~l~~Le~e~~~l~~~l~~---------------------------~A~~LS~~R~~aA~~ 374 (553)
T PRK10869 323 PQHHQQLLEEQQ-QLDDQEDDLETLALAVEKHHQQALE---------------------------TAQKLHQSRQRYAKE 374 (553)
T ss_pred HHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHH
Confidence 444444433333 2344445555555555555432100 112333343 45777
Q ss_pred HHHHHHHHHHhcC
Q 012079 237 FTLQLLSLMRAAH 249 (471)
Q Consensus 237 F~K~Li~~M~~ag 249 (471)
|.+.+..+|+.-|
T Consensus 375 l~~~v~~~L~~L~ 387 (553)
T PRK10869 375 LAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHcC
Confidence 8888888777554
No 10
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=67.13 E-value=6.2 Score=35.71 Aligned_cols=52 Identities=25% Similarity=0.410 Sum_probs=36.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEE
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARV 465 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crV 465 (471)
.+..+.+. |..|||.++|-|.....+. .....|.=.+.|||++++ .||+ ++|
T Consensus 83 Gv~~i~~~-g~~FDp~~Heav~~~~~~~-~~~~~I~~v~~~GY~~~~-rvlRpA~V 135 (137)
T cd00446 83 GVEKIEPE-GEPFDPNLHEAVMQVPSPD-VEPGTVVEVLQKGYKLGD-RVLRPAMV 135 (137)
T ss_pred CCEEECCC-CCCCCHHHheeeeeecCCC-CCcCEEEEEeecCeEECC-EEecccEe
Confidence 45555553 7799999999988633332 234467788999999998 6664 444
No 11
>PRK14158 heat shock protein GrpE; Provisional
Probab=65.95 E-value=8.4 Score=37.62 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=37.9
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
+..+....|..|||.+.|-|.....+..+ ...|.=.+-|||++|+ .||+ ++|-++
T Consensus 138 v~~I~~~~G~~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~d-RVLRpA~V~Vs 193 (194)
T PRK14158 138 VTPVEAEKGTPFDPAYHQAMCQVESAEQE-PNTVVAVFQKGYLLNE-RLLRPAMVSVA 193 (194)
T ss_pred CEEecCCCCCCCChHHhhhheeecCCCCC-cCEEEEEeeCCcEeCC-EEeecceeEeC
Confidence 44444446999999999988763333223 4467788999999999 6665 566543
No 12
>PRK14148 heat shock protein GrpE; Provisional
Probab=65.68 E-value=7.3 Score=38.06 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=38.0
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.+..+.. .|..|||.+.|-|.....+..+ ...|.=.+-||+++|+ .||+ ++|.++
T Consensus 138 Gv~~I~~-~G~~FDP~~HEAv~~~~~~~~~-~gtVv~V~qkGY~l~d-RVLRpA~V~Va 193 (195)
T PRK14148 138 GVEELDP-KGEKFDPNLHEAMAMIPNPEFE-DNTIFDVFQKGYMLNG-RIVRAAKVVIV 193 (195)
T ss_pred CCEEeCC-CCCCCChhHhheeeeeCCCCCC-cCEEEEEeeCCcEeCC-EeeeccEEEeC
Confidence 3444554 4999999999999874333323 3456678899999998 5655 566543
No 13
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.67 E-value=1.7e+02 Score=32.54 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCC
Q 012079 225 VTMCQV-KESSKSFTLQLLSLMRAAHW 250 (471)
Q Consensus 225 ~~l~~A-~~Si~~F~K~Li~~M~~agw 250 (471)
..++.. +++...|++.+...|+.-|+
T Consensus 367 ~~Ls~~R~~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 367 VALSLIRRKAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344445 55678888888888886554
No 14
>PRK14162 heat shock protein GrpE; Provisional
Probab=64.60 E-value=8.9 Score=37.46 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.5
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
+..+.. .|..|||.+.|-|.....+.......|.=.+-+|+++|+ .||+ ++|-++
T Consensus 138 V~~I~~-~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~d-RVLRpA~V~Va 193 (194)
T PRK14162 138 VTEIKA-DGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKD-RTLRPAMVVVA 193 (194)
T ss_pred CEEeCC-CCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCC-EeeecceEEeC
Confidence 444444 599999999999976322111223456678899999999 6665 566543
No 15
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=64.48 E-value=38 Score=41.10 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHhhcCCCCchhhhHh-HHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHH
Q 012079 78 MELETVMNEVFDAVSAMKRAYVS-LQEAHCPWDPERMRVA-DVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVR 155 (471)
Q Consensus 78 ~~~eali~~lFa~VSslKaAY~q-LQ~Ah~Pydpd~I~aA-D~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~ 155 (471)
......+..+|.-..=+-..|.. -.-.--||||..+..+ ..+...||.. |++....... .+....+.++...
T Consensus 103 ~~Al~~Lk~lf~l~~Wf~~~Y~~~~~~~~~~F~~p~~p~~~~~~~~~~~~~---l~~~~~~~~~---~~~~~~~~~~~~~ 176 (1123)
T PRK11448 103 REALMGLKLAFRLAVWFHRTYGKDWDFKPGPFVPPEDPENLLHALQQEVLT---LKQQLELQAR---EKAQSQALAEAQQ 176 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCcchhhhhHHHHHH---HHHHHHHhhh---hhhhhhhhHHHHH
Confidence 34455667777766666666655 2233457998877533 3445556554 4444310000 0111223344456
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 156 EVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 156 s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
..++..+.+.++++++..+.+.++..|+++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 177 QELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777788888888888888888887776654
No 16
>PRK14154 heat shock protein GrpE; Provisional
Probab=64.41 E-value=11 Score=37.22 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=39.0
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.+..+....|..|||.+.|-|.....+..+ ...|.=.+-+||++++ .||+ ++|-++
T Consensus 151 GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~-~gtVveV~qkGY~l~d-RVLRPA~V~Va 207 (208)
T PRK14154 151 GVQVINPNPGDPFDPALHEAMSVQAVPDAK-PDTIIQVLQKGYQLNG-RVLRAARVIVA 207 (208)
T ss_pred CCEEecCCCCCCCChhHhheeeeeCCCCCC-cCEEEEEeeCCcEeCC-EEecceEEEeC
Confidence 344444456999999999999763333223 3467788999999999 6665 566543
No 17
>PRK10325 heat shock protein GrpE; Provisional
Probab=63.77 E-value=6.6 Score=38.25 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=38.0
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.+..+. ..|..|||.+.|-|.....+..+.+ .|.=.+-+|+++|+ .||+ ++|-++
T Consensus 138 Gv~~i~-~~G~~FDP~~HEAv~~~~~~~~~~~-~Vv~v~qkGY~l~d-rvlRpA~V~Vs 193 (197)
T PRK10325 138 GVEVIA-ETNVPLDPNVHQAIAMVESDDVAPG-NVLGIMQKGYTLNG-RTIRAAMVTVA 193 (197)
T ss_pred cCeeeC-CCCCCCChhHhceeeeeCCCCCCcC-eEEEEeeCCcEeCC-EeccCceEEeC
Confidence 344454 3699999999999986433333334 45567889999999 6665 666654
No 18
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.36 E-value=41 Score=31.52 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=48.8
Q ss_pred HhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhh---hHHHHHHHHHHHHhhhhHH
Q 012079 102 QEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAA---PYEAAVAELKRELKAREVE 178 (471)
Q Consensus 102 Q~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~---~yE~~~~kLe~el~~kDse 178 (471)
|....|..||+.+.+|.+.-.--.+...||+.-.-+. .|++.++. +=+..+++|.+|+..+..+
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr-------------~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKR-------------YEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999888888888887665442 23333332 2345566666666666666
Q ss_pred HHHHHHHHH
Q 012079 179 VDNLKEKLK 187 (471)
Q Consensus 179 i~~Lk~~L~ 187 (471)
+.++|-+++
T Consensus 105 L~e~r~~~~ 113 (143)
T PRK11546 105 LDELRVKRD 113 (143)
T ss_pred HHHHHHHHH
Confidence 666655554
No 19
>PRK14160 heat shock protein GrpE; Provisional
Probab=62.22 E-value=11 Score=37.42 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=35.6
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
+..+.. .| .|||.+.|-|........+. ..|.-.+-|||++|+ .||+ ++|-++
T Consensus 157 Ve~I~~-~G-~FDP~~HEAv~~~~~~e~~~-gtVveV~qkGY~l~d-RVLRpA~V~Va 210 (211)
T PRK14160 157 VEEIST-EG-EFDPNLHNAVMHVEDENYGE-NEIVEVFQKGYKRGD-KVIRYSMVKVA 210 (211)
T ss_pred CEEeCC-CC-CCChHHhceeeeeCCCCCCc-CeEEEEeeCCcEeCC-EeeecceEEeC
Confidence 344444 36 89999999988643333333 456678899999998 6665 555543
No 20
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.24 E-value=27 Score=39.30 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHHHHhh---------cCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhc
Q 012079 89 DAVSAMKRAYVSLQEA---------HCPWDPERMRVADVAVVGELRKIGVLRERLKRR 137 (471)
Q Consensus 89 a~VSslKaAY~qLQ~A---------h~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~ 137 (471)
+.+..+..||.+|+.| .++|||+.+.. |-+-|..|..|+|.|...
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~----ve~Rl~~L~~l~RKY~~~ 319 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEE----VEERLFALKSLARKYGVT 319 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHHHHHHHhCCC
Confidence 3345566699999887 46999999864 455677777778877654
No 21
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=61.15 E-value=4 Score=35.24 Aligned_cols=16 Identities=44% Similarity=0.955 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhcC
Q 012079 394 LAKAVWLLHLLAFSLD 409 (471)
Q Consensus 394 mAksVWlLH~LAfSf~ 409 (471)
||+++|+|-+||.++-
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 7999999999999865
No 22
>PRK14144 heat shock protein GrpE; Provisional
Probab=60.99 E-value=11 Score=36.91 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=38.1
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
+..+.. .|..|||.++|-|.....+. .....|.=.+-+||++|+ .||+ ++|-++
T Consensus 143 V~~I~~-~G~~FDP~~HEAv~~~~~~~-~~~gtVv~V~qkGY~l~d-RVLRpA~V~Vs 197 (199)
T PRK14144 143 VEQIDP-LGQTFDPQQHEAMSMQPAPG-APPNSVITVFQKGYKLSD-RVIRPARVIVS 197 (199)
T ss_pred CEEeCC-CCCCCChhHhceeeeeCCCC-CCcCeEEEEeeCCcEECC-EEecccEEEec
Confidence 444443 59999999999987633222 234567788999999999 6665 667654
No 23
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=60.74 E-value=43 Score=31.43 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=44.4
Q ss_pred HHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 119 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 119 ~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
.++.-..+|+.|+++|..--.+.+. +-+-.++..+-..+.+++.+++..+.++..|+.++..+-+
T Consensus 17 ~~~~~~~kl~kl~r~Y~~lm~g~~~--------~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 17 LIIILNIKLRKLKRRYDALMRGKDG--------KNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCc--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456778999999999876433211 2245566677777777777777777777777777776644
No 24
>PRK14141 heat shock protein GrpE; Provisional
Probab=60.42 E-value=9.9 Score=37.55 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=38.3
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
+..+.. .|..|||.+.|-|.....+.. ....|.=.+-+||++++ .||+ ++|-++.
T Consensus 136 V~~I~~-~Ge~FDP~~HEAv~~~~~~~~-~~gtVv~V~qkGY~l~d-RVLRpA~V~Vsk 191 (209)
T PRK14141 136 VKKLDP-EGQKFDPNFHQAMFEVPNPDV-PNNTVVQVVQAGYTIGE-RVLRPAMVGVAK 191 (209)
T ss_pred CEEECC-CCCCCChHHhceeeeecCCCC-CcCEEEEEeeCCcEeCC-EeecccEEEECC
Confidence 444443 599999999998876433322 34457788999999999 6665 6776653
No 25
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=59.38 E-value=31 Score=29.93 Aligned_cols=33 Identities=42% Similarity=0.449 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 159 APYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 159 ~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
..|+.-+.+|+.++.....|+..|+.+|+-...
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999986544
No 26
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.52 E-value=16 Score=35.80 Aligned_cols=56 Identities=23% Similarity=0.432 Sum_probs=39.3
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
.+..+.+. |..|||.+.|-|........+ ...|.=.+-+||++++ .||+ ++|-++.
T Consensus 131 Gv~~I~~~-G~~FDP~~HEAv~~~~~~~~~-~gtVi~V~qkGY~l~d-RVLRPA~V~Vak 187 (194)
T PRK14153 131 GLERIECE-GEEFDPHRHEAMMHVETSEVP-DNTIVDVCKPGYALNS-KVIRPAMVSVAR 187 (194)
T ss_pred CCeeeCCC-CCCCChhHhceeeeeCCCCCC-cCEEEEEeeCCcEeCC-EEeeCcEEEECC
Confidence 45566654 999999999998764333323 3456677899999999 5554 6776653
No 27
>PRK14147 heat shock protein GrpE; Provisional
Probab=58.24 E-value=12 Score=35.76 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=38.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.+..+.. .|..|||.+.|-|........+ ...|.=.+-+||++|+ .||+ ++|-++
T Consensus 114 Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~-~g~Vv~v~qkGY~l~~-RvLRpA~V~Va 169 (172)
T PRK14147 114 GLTLLDP-VGQPFNPEHHQAISQGEAEGVA-PGHVVQVFQKGYLLNE-RLLRPALVVVA 169 (172)
T ss_pred CCEEeCC-CCCCCChHHhceeeeecCCCCC-cCEEEEEeeCCcEeCC-EeccCceEEeC
Confidence 3455554 5999999999998764333223 3457788999999998 7776 455443
No 28
>PRK14145 heat shock protein GrpE; Provisional
Probab=58.03 E-value=12 Score=36.60 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=36.7
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEe
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 467 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyL 467 (471)
+..+.. .|..|||.+.|-|.....+..+ ...|.=.+-||+++|+ .||+ ++|-+
T Consensus 141 Ve~I~~-~Ge~FDP~~HEAv~~~~~~~~~-~gtVv~V~qkGY~l~d-RVLRPA~V~V 194 (196)
T PRK14145 141 VKEIEA-EGQIFDPYKHHAVMQEEVEGKQ-PNEIIEVFQKGYYLKD-KVIRPSLVKV 194 (196)
T ss_pred CEEeCC-CCCCCCchhhheeeeeCCCCCC-cCEEEEEeeCCcEeCC-EeeccceEEe
Confidence 344443 5999999999998864333223 4457788899999998 6765 45544
No 29
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.70 E-value=1.9e+02 Score=32.46 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhh
Q 012079 80 LETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAA 159 (471)
Q Consensus 80 ~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~ 159 (471)
.+..+--+|.-+-.+|.---.|= ++|+.|-++ + .++-.|++.||....+.+. ..+-..-+.+..+
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~--------e~i~ea~k~--s--~~i~~l~ek~r~l~~D~nk---~~~~~~~mk~K~~ 326 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLY--------EKIQEAMKI--S--QKIKTLREKWRALKSDSNK---YENYVNAMKQKSQ 326 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH--H--HHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHH
Confidence 34455556666666665433321 344443322 1 1334566677655443321 0111223556778
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 160 PYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 160 ~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
.|-..+++|+.++..|++||..|+++.+++...
T Consensus 327 ~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 327 EWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888899999999999999999999999988653
No 30
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.95 E-value=1.2e+02 Score=33.14 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=27.5
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
..++..++..|.....+|..+++..+.++..|+++|++++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777666666666666666666666665443
No 31
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.43 E-value=90 Score=28.88 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhH
Q 012079 75 ERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALV 154 (471)
Q Consensus 75 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~ 154 (471)
++++..+.+|-.=....|-||.-|..=| .+|....+.-.+-+.|++.+-.-.+.- .+++
T Consensus 41 d~I~aAD~~vVsEL~~Ls~LK~~y~~~~-----~~~~~~~~~l~a~~~e~qsli~~yE~~----------------~~kL 99 (131)
T PF04859_consen 41 DKIQAADEAVVSELRRLSELKRRYRKKQ-----SDPSPQVARLAAEIQEQQSLIKTYEIV----------------VKKL 99 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCccccccccchHHHHHHHHHHHHH----------------HHHH
Confidence 6777788777777899999999998754 445544444344445555543332222 3457
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012079 155 REVAAPYEAAVAELKRELKAREVEVDNLKEK 185 (471)
Q Consensus 155 ~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~ 185 (471)
++.++..+.-+..|+.+|......-..|.++
T Consensus 100 e~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 100 EAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7888888888888888888777776666554
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.73 E-value=1.4e+02 Score=30.99 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCC------C--ccCC
Q 012079 76 RVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGG------R--RCGG 147 (471)
Q Consensus 76 ~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~------~--~~~~ 147 (471)
|..-.+.+...|-..+..|+.-|..|.. .+..+|.++-.=..+.+.|+.....-..... + ....
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~--------~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~l 214 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDK--------QLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEAL 214 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHH
Confidence 3444678999999999999999998874 3444554433333334444444322111100 0 0000
Q ss_pred CCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 148 VSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 148 ~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
-..+..+...|......+.+|+.+++.++.+|..+.++..++...
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222333444444445577777777777777777666655443
No 33
>PRK14161 heat shock protein GrpE; Provisional
Probab=54.72 E-value=21 Score=34.31 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=38.6
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
+..+....|..|||.+.|-|.....+..+ ...|.=.+-+|+++|+ .||+ ++|-++.
T Consensus 120 v~~I~~~~G~~FDP~~HEAv~~~~~~~~~-~gtVi~v~q~GY~l~d-RVLRpA~V~Vak 176 (178)
T PRK14161 120 IEEIKPEIGSMFDYNLHNAISQIEHPDHA-PNSIITLMQSGYKIRD-RLLRPATVQVVK 176 (178)
T ss_pred CEEecCCCCCCCChHHhhhheeeCCCCCC-cCEEEEEeeCCcEeCC-EeecCceEEeCC
Confidence 34444445999999999998864333223 4567788899999999 6655 6665543
No 34
>PRK14155 heat shock protein GrpE; Provisional
Probab=54.42 E-value=20 Score=35.32 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=40.0
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
.+..+.+..|..|||.+.|-|........ ....|.=.+-+|+++++ .||+ ++|-++.
T Consensus 114 GV~~I~~~~G~~FDP~~HEAv~~~~~~~~-~~gtVi~V~qkGY~l~d-RVLRPA~V~Vak 171 (208)
T PRK14155 114 GLKKIDPAKGDKFDPHLHQAMMEQPSTEV-AAGGVLQVMQAGYELMG-RLVRPAMVAVAA 171 (208)
T ss_pred CCceecCCCCCCCChhHhceeeeecCCCC-CcCeEEEEeeCCeEeCC-EeeccceEEECC
Confidence 45556555799999999998876332322 34457778899999999 5655 6666554
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.69 E-value=1.4e+02 Score=27.22 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhh
Q 012079 81 ETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAP 160 (471)
Q Consensus 81 eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~ 160 (471)
..-+.++=..+..++..+-.|+ +++..+..-+.+--.+...|+...+.-... .-.+-++++.+-..
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~--------~~~~~~ere~~~~~~~~~~l~~~~~~~~~~------~k~~kee~~klk~~ 123 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLK--------EQLEELERELASAEEKERQLQKQLKSLEAK------LKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3334444444455555555553 455555555555555555555444322110 11122445555555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012079 161 YEAAVAELKRELKAREVEVDNLKEKLK 187 (471)
Q Consensus 161 yE~~~~kLe~el~~kDsei~~Lk~~L~ 187 (471)
....-...+-+++.||-||+.||++|.
T Consensus 124 ~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 124 LQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666789999999999999999885
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.65 E-value=1.6e+02 Score=30.47 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=11.1
Q ss_pred hhhHhHHHHHHHHHhhhHhHHHHh
Q 012079 112 RMRVADVAVVGELRKIGVLRERLK 135 (471)
Q Consensus 112 ~I~aAD~~vVseL~~Ls~LK~~y~ 135 (471)
.++.-.+.+...+..|.++.....
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~ 183 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLR 183 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444443
No 37
>PRK14139 heat shock protein GrpE; Provisional
Probab=52.01 E-value=21 Score=34.63 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=39.2
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
.+..+.. .|..|||.++|-|.....+ . ....|.=.+-+||++|+ .||+ ++|-++.
T Consensus 128 Gv~~I~~-~G~~FDP~~HEAv~~~~~~-~-~~gtVi~V~qkGY~l~d-RVLRPA~V~Vak 183 (185)
T PRK14139 128 RVVEINP-VGEKFDPHQHQAISMVPAE-Q-EPNTVVAVLQKGYTIAD-RVLRPALVTVAA 183 (185)
T ss_pred CCceeCC-CCCCCChHHhheeeeecCC-C-CcCEEEEEeeCCcEeCC-EeccCceEEeCC
Confidence 3455555 5999999999999864332 2 34567788999999999 6665 5666543
No 38
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.34 E-value=1e+02 Score=36.12 Aligned_cols=109 Identities=22% Similarity=0.286 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHh-----hcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCC
Q 012079 75 ERVMELETVMNEVFDAVSAMKRAYVSLQE-----AHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVS 149 (471)
Q Consensus 75 ~~~~~~eali~~lFa~VSslKaAY~qLQ~-----Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a 149 (471)
+.++.|++.+.-+---|-+..+.|.+||. +|+ -+.--||-=+-|--+.|++|+.+--+-+..++.
T Consensus 623 ~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i----~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~------ 692 (1104)
T COG4913 623 ETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHI----QALNFASIDLPSAQRQIAELQARLERLTHTQSD------ 692 (1104)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HhcchhhcchhhHHHHHHHHHHHHHHhcCChhH------
Confidence 66788888888888889999999999996 333 223345555566667777787777655443322
Q ss_pred chhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccc
Q 012079 150 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNN 194 (471)
Q Consensus 150 ~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~ 194 (471)
++-.+.-+..-++.++.|+.+.++--.|+..+|+.|+.+....+
T Consensus 693 -~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~ 736 (1104)
T COG4913 693 -IAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSR 736 (1104)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777888888999999999999999999987766543
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.82 E-value=2.8e+02 Score=28.95 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHH
Q 012079 77 VMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERL 134 (471)
Q Consensus 77 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y 134 (471)
..-++-|...|-..+..|+..|..|= ..++.+|.++-.=.++...|+...
T Consensus 139 ~kllegLk~~L~~~~~~l~~D~~~L~--------~~~~~l~~~~~~l~~~~~~L~~e~ 188 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLM--------KELELLNSIKPKLRDRKDALEEEL 188 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467899999999999999998773 345555544433333344444333
No 40
>PRK14146 heat shock protein GrpE; Provisional
Probab=48.80 E-value=20 Score=35.48 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=35.1
Q ss_pred CCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCc---cEEE-EEEEee
Q 012079 419 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNG---SIIK-ARVYLG 468 (471)
Q Consensus 419 rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~---tVik-crVyLs 468 (471)
.|..|||.++|-|.....+..+ ...|.-.+-+|+++|++ .||+ ++|-++
T Consensus 159 ~G~~FDP~~HeAv~~~~~~~~~-~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Va 211 (215)
T PRK14146 159 KGEPFDPMSMEALSSEEGDQYS-EETVIDVYQAGYYYKENEDKFTLRPARVRIG 211 (215)
T ss_pred CCCCCChhHhceeeeecCCCCC-cCEEEEEeeCCeEeCCccCCeeccCceEEeC
Confidence 6999999999999864333323 34466788999999973 3665 566654
No 41
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.02 E-value=88 Score=25.91 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=16.2
Q ss_pred hHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012079 153 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 186 (471)
Q Consensus 153 e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L 186 (471)
.+|.-++.-|..+.+|..++...+.++..|+..|
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444
No 42
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.81 E-value=47 Score=31.49 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=30.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 156 EVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 156 s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
+..+..+.-+++|+.|+++++.+++.||++.+.++.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888899999999999999999999887654
No 43
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=47.63 E-value=1.1e+02 Score=29.32 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCC
Q 012079 75 ERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGG 141 (471)
Q Consensus 75 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~ 141 (471)
+++..++.+..++|..| +. ||+++..|+.-+--.|..+-+|=+.|..-...+
T Consensus 101 ~~~~~~~~~~~~I~~~v----------~~-----~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~ 152 (199)
T PF10112_consen 101 EKVSRIEKIARRIFKYV----------EK-----DPERLTQARKFLYYYLPTAVKLLEKYAELESQP 152 (199)
T ss_pred HHHHHHHHHHHHHHHHH----------HH-----CHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 44445555555555444 32 799999999999999999999999997765433
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.58 E-value=27 Score=31.70 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 163 AAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 163 ~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
.++++|+++|+.+|.|+..|+.+|..+...
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888777654
No 45
>PRK09039 hypothetical protein; Validated
Probab=47.52 E-value=1.3e+02 Score=31.71 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=8.7
Q ss_pred HhhhHhHHHHhhc
Q 012079 125 RKIGVLRERLKRR 137 (471)
Q Consensus 125 ~~Ls~LK~~y~~~ 137 (471)
+.|.++|..|.+.
T Consensus 123 ~~L~~~k~~~se~ 135 (343)
T PRK09039 123 QELDSEKQVSARA 135 (343)
T ss_pred HHHHHHHHHHHHh
Confidence 4677777777655
No 46
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=47.34 E-value=1.3e+02 Score=26.09 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=33.8
Q ss_pred CCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 146 GGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 146 ~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
.+.+...-..++.........+|++.++..+.+-..|.++|.+..
T Consensus 63 ~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 63 SLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred CCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445566667788889999999999999988888887654
No 47
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.61 E-value=61 Score=29.57 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 121 VGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 121 VseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
..||.+|.+=---|+.-..-.-+. .-.-..+++...+.++|.-++-|+++-+..+.++..|+.+|..+-...
T Consensus 43 l~Ele~l~eD~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 43 LEELEKLDEDAPVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHhcCCcccHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456666655545554331100000 001124778999999999999999999999999999999998876654
No 48
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.06 E-value=1.2e+02 Score=29.24 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 159 APYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 159 ~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
...+..+.+|++++.....+|..|+.+|+.+...
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888888888888899999998888553
No 49
>PRK14143 heat shock protein GrpE; Provisional
Probab=44.77 E-value=25 Score=35.45 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=37.9
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.+..+.+ .|..|||.+.|-|.....+..+ ...|.=.+-+||++|+ .||+ ++|-++
T Consensus 166 GV~~i~~-~G~~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~~-RVLRpA~V~Vs 221 (238)
T PRK14143 166 GVSPMRV-VGQEFDPNLHEAVLREPSDEHP-EDVVLEELQRGYHLGG-RVLRHAMVKVS 221 (238)
T ss_pred CCeeeCC-CCCCCChHHhheeeeecCCCCC-cCeEEEEeeCCceeCC-EecccceEEEC
Confidence 3445554 6999999999988753333223 3446668899999998 6665 566655
No 50
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.18 E-value=36 Score=35.34 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC-CCCCCcccccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG-KKGRSLSKRKVNCSSQVAAAPSPDLFEVTMCQVKESSKS 236 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~-k~~~~~~~~~~~~~~~~~~~~sp~~F~~~l~~A~~Si~~ 236 (471)
|+-..+-+++-+..|..+|+||++||.+|......=-.-| +| + . =.-+|.+||+-|++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHR--------V--E-----------AQLALKEARkEIkQ 128 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHR--------V--E-----------AQLALKEARKEIKQ 128 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------H--H-----------HHHHHHHHHHHHHH
Confidence 4556777788888899999999999999975543210000 00 0 0 12378889999988
Q ss_pred HHHHHHHHHHhc
Q 012079 237 FTLQLLSLMRAA 248 (471)
Q Consensus 237 F~K~Li~~M~~a 248 (471)
. |-.|.-||+.
T Consensus 129 L-kQvieTmrss 139 (305)
T PF15290_consen 129 L-KQVIETMRSS 139 (305)
T ss_pred H-HHHHHHHHhh
Confidence 6 6778888876
No 51
>PRK14163 heat shock protein GrpE; Provisional
Probab=42.93 E-value=21 Score=35.47 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=38.1
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
+..+.. .|..|||.+-|-|........+ ...|.=.+-+||++|+ .||+ ++|-++.
T Consensus 132 v~~I~~-~G~~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~~-RVLRPA~V~Vsk 187 (214)
T PRK14163 132 LQQFGK-EGEPFDPTIHEALMHSYAPDVT-ETTCVAILQPGYRIGE-RTIRPARVAVAE 187 (214)
T ss_pred CEEeCC-CCCCCChhHhceeeeecCCCCC-cCEEEEEeeCCcCcCC-EeccCceEEECC
Confidence 444443 6999999999998763333323 4456688899999999 6665 5665543
No 52
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.87 E-value=77 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=36.4
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 196 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l 196 (471)
+.++...+.-.|-++++|...+-....+|+.|+++|..+..+-..+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888899999999999999999999999998887754433
No 53
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=42.80 E-value=45 Score=31.51 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHH--hhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCch
Q 012079 74 IERVMELETVMNEVFDAVSAMKRAYVSLQ--EAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGG 151 (471)
Q Consensus 74 ~~~~~~~eali~~lFa~VSslKaAY~qLQ--~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~ 151 (471)
..+..++..|.. ++-.+|++|= .+..|=+.++ ++..|+-.|.+.... +
T Consensus 71 ~d~~~eLkkL~~-------sll~nfleLl~~l~~~P~~~~~-------------ki~~i~~L~~Nmhhl----------l 120 (162)
T PF05983_consen 71 VDRKKELKKLNK-------SLLLNFLELLDILSKNPSQYER-------------KIEDIRLLFINMHHL----------L 120 (162)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHTTSS---CCCHHH-------------HHHHHHHHHHHHHHH----------H
T ss_pred chHHHHHHHHHH-------HHHHHHHHHHHHHHhCCccHHH-------------HHHHHHHHHHHHHHH----------H
Confidence 355555555554 4455677773 4455522222 455555555544221 1
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
.+.|. ..++|.++.-|+.|++.|..+|..+|+.++++..
T Consensus 121 NeyRP-hQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~ 159 (162)
T PF05983_consen 121 NEYRP-HQARETLIMMMEEQLEEKREEIEEIRKVCEKARE 159 (162)
T ss_dssp HHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 4667889999999999999999999999998865
No 54
>PRK14142 heat shock protein GrpE; Provisional
Probab=41.14 E-value=33 Score=34.41 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=35.0
Q ss_pred CCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 419 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 419 rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.|..|||.+-|-|.....+.......|.-.+-+||++++ .||+ ++|-++
T Consensus 132 ~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~d-RVLRPA~V~Vs 181 (223)
T PRK14142 132 EGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGE-QVLRHALVGVV 181 (223)
T ss_pred CCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCC-EeccCceEEEC
Confidence 599999999998865322221223468888889999999 6665 566654
No 55
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=41.14 E-value=67 Score=29.47 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=29.4
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKE 184 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~ 184 (471)
-++-+.+++-|....++|+++++.++..|+++..
T Consensus 88 k~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999999999888754
No 56
>PRK14159 heat shock protein GrpE; Provisional
Probab=41.00 E-value=39 Score=32.52 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=32.2
Q ss_pred CCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEe
Q 012079 420 GAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 467 (471)
Q Consensus 420 G~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyL 467 (471)
| .|||.+.|-|.....+..+ ...|.-.+-+|+++|+ .||+ ++|-+
T Consensus 129 G-~FDP~~HEAv~~~~~~~~~-~gtVv~v~qkGY~l~d-RVLRpA~V~V 174 (176)
T PRK14159 129 K-EFDPNLHEAMFHVDSENHQ-SGEVVQVLQKGYKIAD-RVIRPTKVSV 174 (176)
T ss_pred C-CCChHHhhhhheeCCCCCC-cCeEEEEeeCCcEeCC-EeeecceeEe
Confidence 6 6999999999764333223 3456688899999998 6665 45544
No 57
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=40.92 E-value=25 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCHHHHHHhhc
Q 012079 240 QLLSLMRAAHWDIAAAVRSIG 260 (471)
Q Consensus 240 ~Li~~M~~agwdl~aa~~si~ 260 (471)
.-+..|+.++|||..|++..-
T Consensus 17 ~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 17 VAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 346788999999999998653
No 58
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.41 E-value=71 Score=27.57 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=29.6
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
..+...+...+..+++|++++..++.++..|+.+|.++.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666777788888888888888888888888887753
No 59
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.27 E-value=2.4e+02 Score=27.24 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHh
Q 012079 82 TVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVA 116 (471)
Q Consensus 82 ali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aA 116 (471)
.|+.+|.+....+=+||..|....+-|.-.+...+
T Consensus 84 lLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~ 118 (189)
T PF10211_consen 84 LLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQA 118 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999887766654444333
No 60
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=38.58 E-value=2.1e+02 Score=23.56 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=45.3
Q ss_pred HHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 120 VVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 120 vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
.-.+|..|-..+..|........ ...........+.-+...+..+..++.++...+.++..+++.|.++...-
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQ-QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666676777744433222 11222344556677777788888888888888888888888877765543
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.64 E-value=2.5e+02 Score=32.57 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=36.8
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+.++...+..|.-+++|+.|++.||.++..|.+++.++...
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888999999999999999999999999999999877664
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.61 E-value=1e+02 Score=33.98 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHH-HHhHHHHHHHH-HHhhcC-CCCchhhhHhHHHHHHHHHhhh-HhHHHHhhcCCCCCCccCCCC
Q 012079 74 IERVMELETVMNEVFD-AVSAMKRAYVS-LQEAHC-PWDPERMRVADVAVVGELRKIG-VLRERLKRRSFGGGRRCGGVS 149 (471)
Q Consensus 74 ~~~~~~~eali~~lFa-~VSslKaAY~q-LQ~Ah~-Pydpd~I~aAD~~vVseL~~Ls-~LK~~y~~~~~~~~~~~~~~a 149 (471)
+..+..-|..|.++-. -+...|.-|-. +|.|-. -=+..-+.++-+++..-|+.|- .+|++=.+...- +-..-.
T Consensus 331 eSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~---~E~n~~ 407 (493)
T KOG0804|consen 331 ESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE---REENKK 407 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3555555555555555 55666655532 222222 2222334444445544443332 122222111110 001112
Q ss_pred chhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 150 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 150 ~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
.+..|+.....++.+-+.++..+..+|..|..|+++|+.+.-.
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 2344667777888888889999999999999999999988554
No 63
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.56 E-value=83 Score=24.72 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 156 EVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 156 s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
..+...|..+..|+.+......++..|+.++..+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666666666666666666554
No 64
>PRK14157 heat shock protein GrpE; Provisional
Probab=37.48 E-value=39 Score=33.93 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=35.4
Q ss_pred CCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 419 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 419 rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.|..|||.+-|-|....... .....|.=.+-+|+++|+ .||+ ++|-++
T Consensus 175 ~Ge~FDP~~HEAV~~~~~~~-~~~gtVi~V~QkGY~l~d-RVLRPA~V~Va 223 (227)
T PRK14157 175 KGEDFDPTKHDAILHKPDPD-AEKETVDTVVEAGYRIGD-RVIRAARVVVA 223 (227)
T ss_pred CCCCCChhhhceeeeecCCC-CCcCEEEEEeeCCceeCC-EeccCceEEeC
Confidence 59999999999987633332 234568888999999998 6665 566554
No 65
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.33 E-value=28 Score=30.93 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 012079 157 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 196 (471)
Q Consensus 157 ~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l 196 (471)
.+-+.+.-..+|+.+|+.||..|-.+.++++-++=+|..|
T Consensus 20 aVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL 59 (102)
T PF10205_consen 20 AVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQL 59 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555444444333
No 66
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.24 E-value=80 Score=27.57 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=40.3
Q ss_pred HHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 119 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 119 ~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
.|..||..|.+=..+|+--.+---..+ ..-....+...+...+..+++|++++..+...+.+++.+|+++
T Consensus 38 ~v~~eL~~l~~d~~vyk~VG~vlv~~~-~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 38 KALEELERLPDDTPVYKSVGNLLVKTD-KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHcCCCcchhHHHhchhhheec-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788887766666654311000000 0011244666666667777777777777777777777777665
No 67
>PRK14149 heat shock protein GrpE; Provisional
Probab=35.39 E-value=60 Score=31.77 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=35.1
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
+..+.. .| .|||.+.|-|.....+..+ ...|.=.+-||+++|+ .||+ ++|-++
T Consensus 135 V~~I~~-~G-~FDP~~HEAv~~v~~~~~~-~gtVv~V~QkGY~l~d-RVLRPA~V~Va 188 (191)
T PRK14149 135 IEGIEC-LE-EFDPNFHNAIMQVKSEEKE-NGKIVQVLQQGYKYKG-RVLRPAMVSIA 188 (191)
T ss_pred CEEeCC-CC-CCChHHhheeeeecCCCCC-cCEEEEEeeCCcEeCC-EEeeccEEEeC
Confidence 344443 36 5999999988764333223 3456678899999998 6665 566554
No 68
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.87 E-value=65 Score=36.69 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=33.7
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
.|+++|.|..|...+++|+..+-.+..|...||..++++
T Consensus 102 rqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 102 RQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 478999999999999999999999999988888776544
No 69
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.69 E-value=1.9e+02 Score=31.01 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=33.9
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
.+|+.+-.+..+++.+.||.++...+..|+-|+.+.+|+..
T Consensus 241 ~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~ 281 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALE 281 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 35566667888899999999999999999999999998444
No 70
>PRK00736 hypothetical protein; Provisional
Probab=33.60 E-value=1.2e+02 Score=24.76 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=34.1
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+.++...+.--|.++++|...+-....+|+.|+++|..+..+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888899999988888888888888888777553
No 71
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=32.86 E-value=1.5e+02 Score=34.95 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=51.9
Q ss_pred hhHhHHHHHHHHHhhhHhHHHH--hhcCCCC----CCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012079 113 MRVADVAVVGELRKIGVLRERL--KRRSFGG----GRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 186 (471)
Q Consensus 113 I~aAD~~vVseL~~Ls~LK~~y--~~~~~~~----~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L 186 (471)
+.+=-.-.|.|+|+.-||-|.+ .+++-.. .+.+. .....++.+.|.+.|..++|||+|+++.+.--..||+.+
T Consensus 44 v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~-~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~ 122 (829)
T KOG2189|consen 44 VSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLD-ESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANY 122 (829)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344455678999998887754 3333111 11111 111134567789999999999999999999999999887
Q ss_pred HHHhcc
Q 012079 187 KTVTGL 192 (471)
Q Consensus 187 ~e~~~~ 192 (471)
-++...
T Consensus 123 ~eL~E~ 128 (829)
T KOG2189|consen 123 NELLEL 128 (829)
T ss_pred HHHHHH
Confidence 665443
No 72
>smart00338 BRLZ basic region leucin zipper.
Probab=32.17 E-value=1.1e+02 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
+...|.-+..|+++...+-.++..|+.++..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 73
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.82 E-value=1.5e+02 Score=23.97 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 160 PYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 160 ~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
..+..+++-+++.+....+|..|+++++++.+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555566667777777777777777654
No 74
>PRK04325 hypothetical protein; Provisional
Probab=30.74 E-value=1.4e+02 Score=24.80 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=33.4
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+.++...+.=-|-++++|...+-...-+|..|+.+|..+..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888888888888888777443
No 75
>PRK00295 hypothetical protein; Provisional
Probab=30.26 E-value=1.5e+02 Score=24.24 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=31.9
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+.++...+.=-|-++.+|...+-....+|+.|+.+|..+..+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888888888888888888888887766443
No 76
>PRK04406 hypothetical protein; Provisional
Probab=29.99 E-value=1.4e+02 Score=24.86 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=32.7
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
+.++...+.=-|.++.+|...+-....+|+.|+.+|+.+..
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777778888888888888888888888888877744
No 77
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=29.98 E-value=85 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 161 YEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 161 yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
.|-.++-|++++.++|.+|..|.+.|.+|+.
T Consensus 72 ~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 72 REQLMRTLEAHVEKRDEVIQQLQKNLKSAEV 102 (272)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556677899999999999999999987754
No 78
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.80 E-value=1.6e+02 Score=30.04 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=48.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcCCC-------CchhhhH--hHHHHHHHHHhhh------HhHHHHhhcCCCCCCccCC
Q 012079 83 VMNEVFDAVSAMKRAYVSLQEAHCPW-------DPERMRV--ADVAVVGELRKIG------VLRERLKRRSFGGGRRCGG 147 (471)
Q Consensus 83 li~~lFa~VSslKaAY~qLQ~Ah~Py-------dpd~I~a--AD~~vVseL~~Ls------~LK~~y~~~~~~~~~~~~~ 147 (471)
|-.++|...+++-- ..-.--.|| |+|-|+. -.++|-+=|+.|- +||+.|..-..
T Consensus 74 LA~kf~eeLrg~VG---hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~ke-------- 142 (290)
T COG4026 74 LAEKFFEELRGMVG---HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKE-------- 142 (290)
T ss_pred HHHHHHHHHHHhhh---hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH--------
Confidence 44555655555432 223334566 3443332 2334555555555 78888754311
Q ss_pred CCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 012079 148 VSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 197 (471)
Q Consensus 148 ~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~ 197 (471)
.++++++..+.+ -.++..++++...+++.|.++...|+.++
T Consensus 143 -----kl~E~~~EkeeL----~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 143 -----KLEELQKEKEEL----LKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred -----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134444444443 34444566666677777766666665554
No 79
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.38 E-value=85 Score=35.85 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
....|..++.++++|+.+++.++.++.+|+.++..+.+
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777766666666666554443
No 80
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.26 E-value=74 Score=21.26 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.0
Q ss_pred HHhhhhHHHHHHHHHHHHHhc
Q 012079 171 ELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 171 el~~kDsei~~Lk~~L~e~~~ 191 (471)
|+..+...|..|+.+|.+|..
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 466677788888888888864
No 81
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.10 E-value=6.6e+02 Score=25.98 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHH-hhhHhHHHH
Q 012079 79 ELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELR-KIGVLRERL 134 (471)
Q Consensus 79 ~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~-~Ls~LK~~y 134 (471)
-++.-+.++-..+.....+..+.|..|-=+||+.=..+-.-.+++|+ .|++++..+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l 230 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQL 230 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888889999999999999885555555566666 455555444
No 82
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.04 E-value=1.7e+02 Score=27.12 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCchhhhHhHHHHHHHHH-hhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHH--HHHHHHHhh
Q 012079 98 YVSLQEAHCPWDPERMRVADVAVVGELR-KIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAV--AELKRELKA 174 (471)
Q Consensus 98 Y~qLQ~Ah~Pydpd~I~aAD~~vVseL~-~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~--~kLe~el~~ 174 (471)
|.-.|..=---+++.+..-|.- +.+|+ .|.+|+..+. .+++.++...... .+|..++..
T Consensus 59 Y~~~Q~~~~~~s~eel~~ld~e-i~~L~~el~~l~~~~k-----------------~l~~eL~~L~~~~t~~el~~~i~~ 120 (169)
T PF07106_consen 59 YFANQDELEVPSPEELAELDAE-IKELREELAELKKEVK-----------------SLEAELASLSSEPTNEELREEIEE 120 (169)
T ss_pred EeeCccccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHH-----------------HHHHHHHHHhcCCCHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHhccccCCC
Q 012079 175 REVEVDNLKEKLKTVTGLNNNGG 197 (471)
Q Consensus 175 kDsei~~Lk~~L~e~~~~n~~l~ 197 (471)
...+|..|..+|+.+.+......
T Consensus 121 l~~e~~~l~~kL~~l~~~~~~vs 143 (169)
T PF07106_consen 121 LEEEIEELEEKLEKLRSGSKPVS 143 (169)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC
No 83
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.00 E-value=78 Score=33.81 Aligned_cols=120 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCCCCCCCcccccccCCCCCCCCCChHHHHHHHHHHHHH
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGGKKGRSLSKRKVNCSSQVAAAPSPDLFEVTMCQVKES 233 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~k~~~~~~~~~~~~~~~~~~~~sp~~F~~~l~~A~~S 233 (471)
+|.+...|.++..+=-.=|+.+..+|..|+.|.+++.-.=.++ ....+....+ ++..++ -+
T Consensus 178 qq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL---LQle~~~~e~----~p~~~~------------~~ 238 (401)
T PF06785_consen 178 QQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL---LQLESDMKES----MPSTPS------------PS 238 (401)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhc----CCCCCc------------ch
Q ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHhhcccCCCCCCCCCCCccccccccchhHHHHHHhHHHHhccCCCCCccc
Q 012079 234 SKSFTLQLLSLMRAA--HWDIAAAVRSIGAAAGNGPDTINSSATSVVSTHHAKYALQSYISCKIFQGFDHETFYM 306 (471)
Q Consensus 234 i~~F~K~Li~~M~~a--gwdl~aa~~si~~~v~~~k~~~~~~~~s~~~~~h~kyalEA~v~~~MF~gFe~~~F~~ 306 (471)
.++-.+.|++++|.. ...-..+++++...--+... ++-.-|+|| ||.+|++-.+++-++
T Consensus 239 s~~v~~ql~selkkivf~~enie~A~slTasry~~~e-----------~svhnysLd---cRrLfDsLreEnlgm 299 (401)
T PF06785_consen 239 SQDVPKQLVSELKKIVFKVENIEAASSLTASRYINSE-----------SSVHNYSLD---CRRLFDSLREENLGM 299 (401)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHhhhccC-----------CccccchHH---HHHHHhhhcccccce
No 84
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.75 E-value=79 Score=31.30 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 197 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~ 197 (471)
|.-.-..+++.++++..|++||..||..|.+........+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~ 51 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE 51 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH
Confidence 3444456788999999999999999999998877654443
No 85
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.70 E-value=1.2e+02 Score=29.96 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=28.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 012079 153 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 196 (471)
Q Consensus 153 e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l 196 (471)
+++..++.-+..+.+|+.+.+....++..++.+++.++..|..+
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566677777777777777777777776665444
No 86
>PRK11637 AmiB activator; Provisional
Probab=27.55 E-value=7.8e+02 Score=26.29 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=6.1
Q ss_pred cCCCccccccc
Q 012079 418 SRGAEFHPQYM 428 (471)
Q Consensus 418 ~rG~~F~~~YM 428 (471)
.-|.-|..+|.
T Consensus 366 ~hg~g~~t~Y~ 376 (428)
T PRK11637 366 EHGKGDMSLYG 376 (428)
T ss_pred EeCCCcEEEcc
Confidence 33445666664
No 87
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=27.40 E-value=4e+02 Score=29.92 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhH
Q 012079 75 ERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALV 154 (471)
Q Consensus 75 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~ 154 (471)
.+.+.+|+-=..|=.+.-|+-+-++|.|-- ---|..||. -..++-|++|.+.-.+.+.+.+.....-++.++-
T Consensus 64 ~rlr~leeEqerL~ssLlaLsSHFAqVQfR-----irQ~vea~p--~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~ 136 (621)
T KOG3759|consen 64 LRLRQLEEEQERLNSSLLALSSHFAQVQFR-----IRQMVEADP--SERLKLLRDLEDFAFKGCPDMNELQRLRSESESG 136 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCH--HHHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 555555555555555555666677777742 234445554 3568889999999888877654222222222222
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc-cCCCC--CCCC-cccc---------cccCCCCCCCCCChH
Q 012079 155 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN-NNGGK--KGRS-LSKR---------KVNCSSQVAAAPSPD 221 (471)
Q Consensus 155 ~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n-~~l~k--~~~~-~~~~---------~~~~~~~~~~~~sp~ 221 (471)
++. |+++-.....=|..||++|++++..- .+.+. ++.- +.+. +.+-++.|+ .+|.+
T Consensus 137 ~~~----------lekq~e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i~-~lste 205 (621)
T KOG3759|consen 137 NDV----------LEKQNERQKELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDID-KLSTE 205 (621)
T ss_pred chh----------hhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCcc-cccHH
Confidence 222 33332222223556666666664432 11111 0000 0000 011122233 45555
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHhcCCCHHHHHHhhcccC
Q 012079 222 LFEVTMCQVKESSKSFTLQ------LLSLMRAAHWDIAAAVRSIGAAA 263 (471)
Q Consensus 222 ~F~~~l~~A~~Si~~F~K~------Li~~M~~agwdl~aa~~si~~~v 263 (471)
..- +++-.|+.+|+-+ |+.+++.-=-||..-+|.|+..+
T Consensus 206 elr---~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 206 ELR---RQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred HHH---HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 4556667777643 67888888788888888876554
No 88
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.30 E-value=1e+02 Score=24.69 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 166 AELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 166 ~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
.+||.++...++.|..+|.+++++..
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554433
No 89
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.90 E-value=1.6e+02 Score=24.40 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
.-.+..++++|.+++...+..|..|+.+++.+...
T Consensus 28 el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 28 ELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888766553
No 90
>smart00338 BRLZ basic region leucin zipper.
Probab=26.77 E-value=1.7e+02 Score=23.03 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=20.5
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 186 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L 186 (471)
++++...+..++....+|.+++.....++..|+..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555556666666666665555544
No 91
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.72 E-value=1.8e+02 Score=23.98 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=32.4
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+.++...+.=-|.++.+|...+-....+|+.|+++|..+..+
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777778888888888888888888888888777543
No 92
>PRK14164 heat shock protein GrpE; Provisional
Probab=26.66 E-value=64 Score=32.18 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=33.3
Q ss_pred CCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 419 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 419 rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.|..|||..-|-|.....+ . ...|+=.+-+||++|+ .||+ ++|-++
T Consensus 169 ~Ge~FDP~~HEAV~~~~~~--~-~~~V~~V~qkGY~l~d-RVLRPA~V~Va 215 (218)
T PRK14164 169 EGDAFDPEIHEAVQDLSSG--D-EKVLGTVLRKGYRMGD-RVLRTAMVIIA 215 (218)
T ss_pred CCCCCChhHhheeeeecCC--C-CCEeeEEeeCCcEECC-EeccCceEEeC
Confidence 5999999999988753222 1 2356667899999998 6665 566654
No 93
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.49 E-value=1.6e+02 Score=23.27 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 159 APYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 159 ~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
......+.+|++++.....+...|+++++.+..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455667777777777777777777777733
No 94
>PRK14156 heat shock protein GrpE; Provisional
Probab=26.35 E-value=86 Score=30.29 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=30.6
Q ss_pred cccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEe
Q 012079 422 EFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYL 467 (471)
Q Consensus 422 ~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyL 467 (471)
.|||.+.|-|.....+.......|.=.+-+|+++|+ .||+ ++|-+
T Consensus 130 ~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l~d-RVLRpA~V~V 175 (177)
T PRK14156 130 SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKLHE-RLLRPAMVVV 175 (177)
T ss_pred CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEeCC-EEeecceeEe
Confidence 899999999876332211224456677899999999 5655 56654
No 95
>PRK00846 hypothetical protein; Provisional
Probab=26.33 E-value=1.8e+02 Score=24.63 Aligned_cols=43 Identities=14% Similarity=0.012 Sum_probs=33.5
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
+.++...+.--|.++.+|...+-.....|+.|+++|+-+..+-
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888887665543
No 96
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.09 E-value=2.8e+02 Score=29.49 Aligned_cols=75 Identities=16% Similarity=0.316 Sum_probs=42.4
Q ss_pred HHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHH
Q 012079 89 DAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAEL 168 (471)
Q Consensus 89 a~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kL 168 (471)
..+..+..-|-+||..|.=| ..-|+.++++.+.+... +..|+..++.....++++
T Consensus 4 eEW~eL~~efq~Lqethr~Y------------~qKleel~~lQ~~C~ss-------------I~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSY------------KQKLEELSKLQDKCSSS-------------ISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHh
Confidence 34566777888888887533 55666666776666544 344555566666666666
Q ss_pred HHHHhhh-hHHHHHHHHHHHH
Q 012079 169 KRELKAR-EVEVDNLKEKLKT 188 (471)
Q Consensus 169 e~el~~k-Dsei~~Lk~~L~e 188 (471)
+...... ...|+.|++++.+
T Consensus 59 ~~~~~~e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 59 KKSLSAEERELIEKLEEDIKE 79 (330)
T ss_pred ccCCChhHHHHHHHHHHHHHH
Confidence 4432222 2224444444443
No 97
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=25.62 E-value=6.4e+02 Score=25.57 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhc
Q 012079 93 AMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRR 137 (471)
Q Consensus 93 slKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~ 137 (471)
.++.+-.+|+.+..-+....|..+...+...-..|...++.|.+.
T Consensus 89 ~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r~ 133 (331)
T PRK03598 89 NVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNRQ 133 (331)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555566666555544444555555555443
No 98
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.53 E-value=1.7e+02 Score=25.37 Aligned_cols=37 Identities=16% Similarity=0.417 Sum_probs=23.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 153 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 153 e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
.+...+...+..+++|++++..+..++..|+..|+++
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666553
No 99
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.31 E-value=1.8e+02 Score=23.65 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=27.3
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 155 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 155 ~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
+..++.....+.+++.+++..+.+...|+.++..+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555666777888888888888888888877665
No 100
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.28 E-value=1.2e+02 Score=34.37 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=35.5
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
..+.+..+.|+..+++|++|+..|++||..|+++-+++..
T Consensus 283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999999999999988865
No 101
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.04 E-value=1.2e+02 Score=25.36 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=15.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLK 187 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~ 187 (471)
+...++..+..+++|++++..+..++..++.+|.
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.03 E-value=2.3e+02 Score=32.88 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=32.5
Q ss_pred CchhhHHhhhhhHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 149 SGGALVREVAAPYEA---AVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 149 a~~~e~~s~i~~yE~---~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
|+-+.-+.|...+.. .++-++.++++||.||.+||.+|.++..--
T Consensus 612 aEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 612 AETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555543 355567899999999999999999987643
No 103
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=24.96 E-value=6.9e+02 Score=24.77 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc--ccCCCCCCCCcccccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL--NNNGGKKGRSLSKRKVNCSSQVAAAPSPDLFEVTMCQVKESSK 235 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~--n~~l~k~~~~~~~~~~~~~~~~~~~~sp~~F~~~l~~A~~Si~ 235 (471)
++..+-..+.|+++++..--.|..+++.|+--.+. |...+ ++ ......+|-+++++..
T Consensus 77 ~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te-----------~~---------~n~~~~~Ll~~~k~eq 136 (209)
T COG5124 77 LQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTE-----------GQ---------KNYNREALLEKRKKEQ 136 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhccccc-----------ch---------hhHHHHHHHHHHHHHH
Confidence 34445566777777777777777777777643321 11111 11 1124566777888888
Q ss_pred HHHHHHHHHHHh---cCCCHHHHHH---hhcccCCCCCCCCCCCccccccccchhHHHHHHhHHHHhccCC--CCCccc
Q 012079 236 SFTLQLLSLMRA---AHWDIAAAVR---SIGAAAGNGPDTINSSATSVVSTHHAKYALQSYISCKIFQGFD--HETFYM 306 (471)
Q Consensus 236 ~F~K~Li~~M~~---agwdl~aa~~---si~~~v~~~k~~~~~~~~s~~~~~h~kyalEA~v~~~MF~gFe--~~~F~~ 306 (471)
+--|.=++-+.. -.||+..+-. ..+-+ ...+.-+-+.+|+|+.||..=+ ++.|++
T Consensus 137 d~~k~~l~~l~~~~pi~~d~~~~~~kk~~~~~n----------------~~tDnI~ilidy~c~kf~~~~~qir~~fgI 199 (209)
T COG5124 137 DEIKKKLNSLQKIEPIRWDAAKIQEKKKKVHLN----------------KTTDNIEILIDYLCKKFFLKPEQIRKEFGI 199 (209)
T ss_pred HHHHHHhccccccCchhHHHHhhhHHHHHHHHH----------------hhhhhHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 777744444432 2566533211 11100 1145568899999999997543 244543
No 104
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.63 E-value=2.1e+02 Score=22.39 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=19.0
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEK 185 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~ 185 (471)
+.+++..+..++.....|..++.....++..|+.+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555555544
No 105
>PRK02119 hypothetical protein; Provisional
Probab=24.47 E-value=2.1e+02 Score=23.70 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=31.1
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
+.++...+.=-|.++.+|...+-....+|+.|+++|..+..
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888888888888888877644
No 106
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.32 E-value=7.1e+02 Score=24.69 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=61.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchh
Q 012079 73 SIERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGA 152 (471)
Q Consensus 73 ~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~ 152 (471)
..+..+.+|+.|+++=..++.- .+++.++ -.+|-.||+.|=+-|+.=.+.... ..........
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~-----------~~~~~~~----~~lvk~e~EqLL~YK~~ql~~~~~--~~~~~~~~l~ 163 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESR-----------RSDTDSK----PALVKREFEQLLDYKERQLRELEE--GRSKSGKNLK 163 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------ccCCcch----HHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCHH
Confidence 3355667777777765555432 2333332 246677999998877766544332 1112334456
Q ss_pred hHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 012079 153 LVREVAAPYEAAVAELKRELKAREVEVDNLKE 184 (471)
Q Consensus 153 e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~ 184 (471)
.++.=|++-|-.|.-||.=|+.|..|...|++
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67788888889999999999988888887763
No 107
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=24.28 E-value=1.6e+02 Score=25.93 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=46.4
Q ss_pred HHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 012079 119 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 197 (471)
Q Consensus 119 ~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~ 197 (471)
.....|..|.+.+..|...-................+.-+......+...+.++.....++...++.|.++...-+.++
T Consensus 31 ~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~le 109 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALE 109 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777787778877543211000001122234455666666777777777777777777777777777766544443
No 108
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=23.23 E-value=3.6e+02 Score=33.66 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHHHHhhcC----CCCchhhhHhHHHH
Q 012079 87 VFDAVSAMKRAYVSLQEAHC----PWDPERMRVADVAV 120 (471)
Q Consensus 87 lFa~VSslKaAY~qLQ~Ah~----Pydpd~I~aAD~~v 120 (471)
+=+....+..+..+++.+-. ||+++....+..++
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL 853 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLAL 853 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Confidence 33344455556666666544 99999999976666
No 109
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.12 E-value=83 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=34.4
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCCC
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNGG 197 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l~ 197 (471)
.-||.+. ..-..+||.|++....+|..|+.+++.+...|-+|=
T Consensus 85 tsQRDRF---R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 85 TSQRDRF---RQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466554 455678999999999999999999999999985543
No 110
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.03 E-value=3.5e+02 Score=30.21 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 162 EAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 162 E~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
....+++|++|+.+++|+..|+.+++.+
T Consensus 96 saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 96 NKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556677888888888888888888543
No 111
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.76 E-value=1.2e+02 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q 012079 166 AELKRELKAREVEVDNLKEKLKT 188 (471)
Q Consensus 166 ~kLe~el~~kDsei~~Lk~~L~e 188 (471)
.+|+..+..+..||.+++..+..
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666555543
No 112
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.89 E-value=1.4e+02 Score=28.79 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=18.0
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 186 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L 186 (471)
.++|+.|..-|.-+.-|..-|-+|+.++.+||++|
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444445445555555555555555555554
No 113
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=2.2e+02 Score=26.77 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=31.9
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
.-++..++.|+...++|+..|+.+...+..|.+++.++..
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888888888888888888888888888888877654
No 114
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.36 E-value=7.5e+02 Score=26.83 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhh
Q 012079 74 IERVMELETVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGAL 153 (471)
Q Consensus 74 ~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e 153 (471)
..+...+...+..|=..+..+..+..++|.... .+. + -.+++.++++........ +..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~-----~~~---~----~~~~i~el~~~i~~~~~~----------i~~ 355 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD-----EFN---E----QSKKLLELKNKISTNKQS----------LIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---H----HHHHHHHHHHHHHHHHHH----------HHH
Confidence 466677777888888888888888887777553 111 1 144555555555433221 222
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
........+.-+.+|+.+....+.++..|..+|+++...
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555555443
No 115
>PRK14127 cell division protein GpsB; Provisional
Probab=21.22 E-value=1.7e+02 Score=26.22 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=25.7
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
+..++.+||.+ .+++..+..++..|+++|++....-
T Consensus 32 Ld~V~~dye~l----~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 32 LDDVIKDYEAF----QKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777788765 4466667777778888887776644
No 116
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=21.13 E-value=9.9e+02 Score=27.65 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcccCCCCCC
Q 012079 222 LFEVTMCQVKESSKSFTLQLLSLMRAAHWDIAAAVRSIGAAAGNGPD 268 (471)
Q Consensus 222 ~F~~~l~~A~~Si~~F~K~Li~~M~~agwdl~aa~~si~~~v~~~k~ 268 (471)
-|.+.+....+..+...|-|=.+.+.. .++.+.-...|.|...
T Consensus 135 Ay~q~c~~~~~~l~e~~~rl~~~~~~~----q~~~R~a~~~v~~~~~ 177 (632)
T PF14817_consen 135 AYSQQCEEQRRILREYTKRLQGQVEQL----QDIQRKAKVEVEFGPS 177 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhccCceeecCC
Confidence 477788888888888888887777765 3344443444555444
No 117
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.97 E-value=1.4e+02 Score=34.07 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=30.9
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKT 188 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e 188 (471)
+++.+.++-..+..|++++.+|+++|..|+++|..
T Consensus 308 ~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 308 LVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677788889999999999999999999999863
No 118
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=20.80 E-value=1.6e+02 Score=28.33 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=38.2
Q ss_pred HHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012079 122 GELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEK 185 (471)
Q Consensus 122 seL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~ 185 (471)
-||++|+-||+.|.......... .......-.+.+-+..|-+.+.+++.+...+-|-..+|-.
T Consensus 42 VElRRLs~Lk~~fs~~~~~~~~~-~~~s~~sS~kaL~rER~~L~k~m~~rls~eere~ly~kWg 104 (161)
T PF11995_consen 42 VELRRLSFLKETFSEGGQAAGGG-HTLSLASSIKALRREREMLAKQMQKRLSREEREELYKKWG 104 (161)
T ss_pred eehHHHHHHHHHhccCCcccCCC-CcccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhcC
Confidence 49999999999998765322111 0112223456666667777777777776666554444444
No 119
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=20.30 E-value=9e+02 Score=24.40 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=31.5
Q ss_pred ccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHH----HHHHHHHH
Q 012079 144 RCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVD----NLKEKLKT 188 (471)
Q Consensus 144 ~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~----~Lk~~L~e 188 (471)
+.+..+..++.+..++.++..+..+++++..+..++. .-+..|+.
T Consensus 177 ~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~ 225 (301)
T PF14362_consen 177 VPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDE 225 (301)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 4455566788888889999888888888776666665 44444443
Done!