Query 012079
Match_columns 471
No_of_seqs 119 out of 137
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxa_A CGMP-dependent protein 94.3 0.051 1.7E-06 43.4 4.7 46 148-193 10-55 (67)
2 3nmd_A CGMP dependent protein 93.7 0.096 3.3E-06 42.4 5.4 34 158-191 35-68 (72)
3 1t6f_A Geminin; coiled-coil, c 75.2 3.6 0.00012 29.1 4.0 25 166-190 10-34 (37)
4 1m1j_C Fibrinogen gamma chain; 65.6 31 0.0011 35.8 10.3 39 154-192 96-134 (409)
5 1dkg_A Nucleotide exchange fac 60.5 8.1 0.00028 36.2 4.5 56 411-469 138-194 (197)
6 1kd8_B GABH BLL, GCN4 acid bas 60.2 18 0.00061 25.5 4.9 34 157-190 2-35 (36)
7 3a7o_A Autophagy protein 16; c 59.7 12 0.0004 30.2 4.5 29 159-187 14-42 (75)
8 3nmd_A CGMP dependent protein 58.5 15 0.0005 29.7 5.0 36 158-193 21-56 (72)
9 1kd8_A GABH AIV, GCN4 acid bas 55.5 21 0.00072 25.2 4.7 34 157-190 2-35 (36)
10 1j1d_C Troponin I, TNI; THIN f 50.9 99 0.0034 27.5 9.6 75 115-191 26-107 (133)
11 3a6m_A Protein GRPE, HSP-70 co 49.8 18 0.0006 33.4 4.8 52 412-469 116-168 (177)
12 3e21_A HFAF1, FAS-associated f 49.0 8.5 0.00029 28.2 2.0 20 242-261 25-44 (45)
13 4ani_A Protein GRPE; chaperone 47.0 15 0.00051 35.0 3.9 48 419-468 164-212 (213)
14 1t2k_D Cyclic-AMP-dependent tr 46.9 39 0.0013 25.6 5.6 32 158-189 24-55 (61)
15 4abx_A DNA repair protein RECN 44.3 1.5E+02 0.0052 26.4 10.1 40 92-135 94-142 (175)
16 2dgc_A Protein (GCN4); basic d 41.8 29 0.00098 26.9 4.1 33 155-187 29-61 (63)
17 1j1e_C Troponin I, TNI; THIN f 40.9 1.3E+02 0.0044 28.0 9.1 75 115-191 26-107 (180)
18 3ajw_A Flagellar FLIJ protein; 39.6 1.3E+02 0.0046 25.3 8.6 75 119-193 37-111 (150)
19 2zqm_A Prefoldin beta subunit 39.5 50 0.0017 27.2 5.7 40 152-191 73-112 (117)
20 3iv1_A Tumor susceptibility ge 37.4 75 0.0026 25.9 6.1 35 159-193 42-76 (78)
21 2yy0_A C-MYC-binding protein; 35.3 46 0.0016 25.0 4.2 28 165-192 21-48 (53)
22 1ytz_I Troponin I; muscle, THI 34.8 85 0.0029 29.3 6.8 73 115-190 24-103 (182)
23 4emc_A Monopolin complex subun 34.5 29 0.00098 32.7 3.6 25 168-192 32-56 (190)
24 3m91_A Proteasome-associated A 34.4 92 0.0031 23.3 5.7 38 153-190 13-50 (51)
25 1lwu_C Fibrinogen gamma chain; 34.2 47 0.0016 33.4 5.4 40 153-192 16-55 (323)
26 3ghg_C Fibrinogen gamma chain; 33.5 2.5E+02 0.0085 29.2 10.8 38 155-192 97-134 (411)
27 2dfs_A Myosin-5A; myosin-V, in 33.5 2.7E+02 0.0093 32.2 12.2 89 85-191 956-1044(1080)
28 3m9b_A Proteasome-associated A 33.2 37 0.0012 33.2 4.3 41 151-191 56-96 (251)
29 1fxk_A Prefoldin; archaeal pro 32.8 56 0.0019 26.5 4.8 37 152-188 68-104 (107)
30 2wt7_A Proto-oncogene protein 32.3 1E+02 0.0035 23.4 5.9 32 158-189 25-56 (63)
31 1l8d_A DNA double-strand break 32.2 2.1E+02 0.0071 23.4 11.7 49 143-191 51-99 (112)
32 1t2k_D Cyclic-AMP-dependent tr 31.9 83 0.0028 23.7 5.3 36 151-186 24-59 (61)
33 3efg_A Protein SLYX homolog; x 31.5 93 0.0032 25.0 5.8 46 151-196 16-61 (78)
34 1wlq_A Geminin; coiled-coil; 2 31.1 74 0.0025 26.2 5.1 33 159-191 32-66 (83)
35 1wt6_A Myotonin-protein kinase 30.3 61 0.0021 26.6 4.5 30 154-183 43-72 (81)
36 1ytz_T Troponin T; muscle, THI 29.4 1.7E+02 0.0058 24.9 7.4 59 129-189 24-89 (107)
37 1ci6_A Transcription factor AT 29.4 94 0.0032 23.8 5.3 33 154-186 28-60 (63)
38 2avr_X Adhesion A; antiparalle 27.8 1.1E+02 0.0038 26.7 6.0 102 85-193 5-111 (119)
39 1gd2_E Transcription factor PA 27.5 44 0.0015 26.5 3.1 36 158-193 31-66 (70)
40 2akf_A Coronin-1A; coiled coil 27.3 80 0.0027 21.4 3.8 21 168-188 4-24 (32)
41 1fzc_C Fibrin; blood coagulati 27.1 53 0.0018 33.0 4.4 39 154-192 9-47 (319)
42 3mq7_A Bone marrow stromal ant 27.0 90 0.0031 27.3 5.2 37 155-191 70-106 (121)
43 1fxk_C Protein (prefoldin); ar 27.0 1.1E+02 0.0039 25.8 6.0 46 149-194 1-46 (133)
44 1m1j_B Fibrinogen beta chain; 26.8 5.3E+02 0.018 27.1 12.1 27 77-103 109-135 (464)
45 1jnm_A Proto-oncogene C-JUN; B 26.7 43 0.0015 25.4 2.9 33 157-189 23-55 (62)
46 1ykh_A RNA polymerase II media 26.7 84 0.0029 27.0 5.0 34 158-191 71-104 (108)
47 3ghg_B Fibrinogen beta chain; 26.7 2.5E+02 0.0084 29.7 9.4 90 75-191 95-191 (461)
48 2wt7_A Proto-oncogene protein 26.0 1.2E+02 0.0041 23.0 5.3 37 151-187 25-61 (63)
49 1gd2_E Transcription factor PA 25.9 81 0.0028 25.0 4.4 40 150-189 30-69 (70)
50 1a31_A Protein (topoisomerase 25.8 70 0.0024 34.8 5.3 88 82-191 409-496 (591)
51 1g6u_A Domain swapped dimer; d 25.1 90 0.0031 22.6 4.0 22 168-189 25-46 (48)
52 1jnm_A Proto-oncogene C-JUN; B 24.8 88 0.003 23.6 4.3 28 166-193 25-52 (62)
53 4ghu_A TNF receptor-associated 24.3 98 0.0034 28.3 5.4 33 160-192 4-36 (198)
54 2fxo_A Myosin heavy chain, car 23.9 1.3E+02 0.0045 25.8 5.8 41 151-191 85-125 (129)
55 1uii_A Geminin; human, DNA rep 22.8 83 0.0028 25.9 4.0 26 166-191 49-74 (83)
56 1nkp_B MAX protein, MYC proto- 22.6 80 0.0027 25.0 3.8 28 165-192 49-76 (83)
57 3i00_A HIP-I, huntingtin-inter 22.3 1.5E+02 0.0051 25.7 5.8 43 152-194 36-85 (120)
58 1ca9_A TRAF2, protein (TNF rec 22.1 74 0.0025 28.5 4.0 36 157-192 4-39 (192)
59 4dk0_A Putative MACA; alpha-ha 21.9 3E+02 0.01 26.4 8.7 34 159-192 118-151 (369)
60 1fxk_C Protein (prefoldin); ar 21.1 1.5E+02 0.0051 25.1 5.6 40 152-191 91-130 (133)
61 3gpv_A Transcriptional regulat 21.1 3.6E+02 0.012 23.3 8.2 33 161-193 93-125 (148)
62 1nkp_B MAX protein, MYC proto- 20.8 97 0.0033 24.5 4.0 34 157-190 48-81 (83)
63 3ra3_A P1C; coiled coil domain 20.8 1.3E+02 0.0043 19.7 3.7 24 167-190 4-27 (28)
64 3bvo_A CO-chaperone protein HS 20.3 2.8E+02 0.0094 25.7 7.6 17 91-107 59-75 (207)
65 1ci6_A Transcription factor AT 20.1 1.8E+02 0.0063 22.1 5.3 37 154-190 21-57 (63)
No 1
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=94.31 E-value=0.051 Score=43.41 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=35.2
Q ss_pred CCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 148 VSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 148 ~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
....++++..|+..+..+.+||.+++.||.+|.+||.+|+...+-.
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456889999999999999999999999999999999999887754
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=93.75 E-value=0.096 Score=42.37 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
|+..+..+++|+++|..||++|..|+.+|+...+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4778889999999999999999999999998754
No 3
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=75.22 E-value=3.6 Score=29.06 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 166 AELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 166 ~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
++|.+++..||.+|..||++=.++.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5799999999999999999876664
No 4
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=65.61 E-value=31 Score=35.83 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=32.4
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+..++...+..++.|+..+...+..|..|++++.++...
T Consensus 96 ~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 96 YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344677788888999999999999999999999888764
No 5
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=60.54 E-value=8.1 Score=36.23 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=38.6
Q ss_pred CcceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 411 APCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 411 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
.+..+.. .|..|||.+.|-|.....+..+ ...|.-.+-+||++|+ .||+ ++|-++.
T Consensus 138 Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~-~~tVv~v~qkGY~l~d-RvLRpA~V~V~~ 194 (197)
T 1dkg_A 138 GVEVIAE-TNVPLDPNVHQAIAMVESDDVA-PGNVLGIMQKGYTLNG-RTIRAAMVTVAK 194 (197)
T ss_dssp TEEEECC-CSSBCCTTSEEEEEEEECSSSC-TTBEEEEEECEEEETT-EEEECEEEEEEE
T ss_pred CCEEeCC-CCCCCCHHHhheeeeecCCCCC-cCeEEEEeeCCeeeCC-EEecceEEEecC
Confidence 3444443 5999999999988753222223 3457778999999998 6766 6776653
No 6
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.18 E-value=18 Score=25.52 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 157 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 157 ~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
+|.-.|.-|++|-.+...++.|+.+||+.|.++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 3667888999999999999999999999998875
No 7
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=59.72 E-value=12 Score=30.24 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012079 159 APYEAAVAELKRELKAREVEVDNLKEKLK 187 (471)
Q Consensus 159 ~~yE~~~~kLe~el~~kDsei~~Lk~~L~ 187 (471)
.+.+.++..|+++|+.||.||..|++-+.
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455888999999999999999998774
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.48 E-value=15 Score=29.68 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
|..++.++++-..||+.||.-|..|.+.|++.+...
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777888888888888888887665543
No 9
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.51 E-value=21 Score=25.16 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 157 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 157 ~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
+|.-.|.-|++|-.+...++.|+.+||+-|.++.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 3567788999999999999999999999998875
No 10
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=50.90 E-value=99 Score=27.45 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHH-------HHhhhhHHHHHHHHHHH
Q 012079 115 VADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKR-------ELKAREVEVDNLKEKLK 187 (471)
Q Consensus 115 aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~-------el~~kDsei~~Lk~~L~ 187 (471)
.|=+.+-.|-....+=|+.|......|-. +.....+++|.+.+.|+..+..|+. .++..|-||..|+.++.
T Consensus 26 kA~e~l~kE~e~k~eeKkkiLaER~~pL~--id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~ 103 (133)
T 1j1d_C 26 IAKQELEREAEERRGEKGRALSTRAQPLE--LAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHH
Confidence 34455566777888889999665543322 2233467799999999888776655 46777889999999998
Q ss_pred HHhc
Q 012079 188 TVTG 191 (471)
Q Consensus 188 e~~~ 191 (471)
++..
T Consensus 104 Dl~g 107 (133)
T 1j1d_C 104 DLRG 107 (133)
T ss_dssp HHC-
T ss_pred HHHc
Confidence 8865
No 11
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=49.79 E-value=18 Score=33.44 Aligned_cols=52 Identities=29% Similarity=0.547 Sum_probs=37.3
Q ss_pred cceEEecCCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEeec
Q 012079 412 PCQFEASRGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLGS 469 (471)
Q Consensus 412 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs~ 469 (471)
+..+.. .|..|||.+.|-|..... ....|.-.+-+|+++|+ .||+ ++|-++.
T Consensus 116 v~~i~~-~Ge~FDP~~HeAv~~~~~----~~gtVv~v~qkGY~l~d-RvLRpA~V~V~~ 168 (177)
T 3a6m_A 116 VEEVPG-EGEAFDPRYHEAVGLLPG----EPGKVAKVFQRGFRMGE-ALVRPARVAVGE 168 (177)
T ss_dssp CEECCC-TTSBCCTTTEEEEEEEES----STTBEEEEEECCEEETT-EEEECEEEEEEE
T ss_pred CEEeCC-CCCCCCHHHhhhhhcccC----CcCeEEEEeecCeeeCC-EEecCeEEEEeC
Confidence 444443 599999999999875322 23467788999999998 6665 6776653
No 12
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=48.99 E-value=8.5 Score=28.21 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=15.1
Q ss_pred HHHHHhcCCCHHHHHHhhcc
Q 012079 242 LSLMRAAHWDIAAAVRSIGA 261 (471)
Q Consensus 242 i~~M~~agwdl~aa~~si~~ 261 (471)
...+++++|||..|++...|
T Consensus 25 ~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 25 ITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHcCCcHHHHHHHHcC
Confidence 35678999999999986543
No 13
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=47.02 E-value=15 Score=35.04 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=34.4
Q ss_pred CCCcccccccccccccCCCCCCCCCeEeEEeeCCeeeCCccEEE-EEEEee
Q 012079 419 RGAEFHPQYMESVVKFSGGRLPAVQIVGFPVSPGFKLGNGSIIK-ARVYLG 468 (471)
Q Consensus 419 rG~~F~~~YMEsV~~~~~~~~~~~~~V~ftV~PGF~vg~~tVik-crVyLs 468 (471)
.|..|||.+.|-|.....+.. ....|.-.+-+||++|+ .||+ ++|-++
T Consensus 164 ~Ge~FDP~~HeAv~~v~~~~~-~~gtVv~V~qkGY~l~d-RVLRpA~V~Va 212 (213)
T 4ani_A 164 VGKPFDPYLHQAVMQAEAEGY-EPNTVVEELQKGYKLKD-RVLRPAMVKVS 212 (213)
T ss_dssp SSSCCCTTTEEEEEEECCSSS-CSSSEEEEEECCCEETT-SCCSCEEEEEE
T ss_pred CCCCCCHHHceeeeeecCCCC-CCCcEEEEEeCCeEECC-EEeeceEEEeC
Confidence 499999999999876332222 34457778999999998 6664 666543
No 14
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.93 E-value=39 Score=25.56 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
+...|.-++.|+.+...+.++|..|+.++..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555444
No 15
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=44.26 E-value=1.5e+02 Score=26.41 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHh---------hcCCCCchhhhHhHHHHHHHHHhhhHhHHHHh
Q 012079 92 SAMKRAYVSLQE---------AHCPWDPERMRVADVAVVGELRKIGVLRERLK 135 (471)
Q Consensus 92 SslKaAY~qLQ~---------Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~ 135 (471)
..+..||++|+. ....|||+.+.. |-.-|..|-.|+|.|.
T Consensus 94 e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~----ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 94 NELRAALESVQAIAGELRDVAEGSAADPEALDR----VEARLSALSKLKNKYG 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHHHHHHHcC
Confidence 335555555554 356778776643 3445556666666664
No 16
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.77 E-value=29 Score=26.86 Aligned_cols=33 Identities=27% Similarity=0.167 Sum_probs=24.3
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012079 155 REVAAPYEAAVAELKRELKAREVEVDNLKEKLK 187 (471)
Q Consensus 155 ~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~ 187 (471)
+..+...|.-+..|+.+...+..+|..|++.|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777788888888888888888888887764
No 17
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=40.90 E-value=1.3e+02 Score=28.01 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=53.0
Q ss_pred HhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHH-------HhhhhHHHHHHHHHHH
Q 012079 115 VADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRE-------LKAREVEVDNLKEKLK 187 (471)
Q Consensus 115 aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~e-------l~~kDsei~~Lk~~L~ 187 (471)
.|=.-+-.|-....+-|+.|......|-. +.....+++|.+.+.|+..+..|+.+ ++..|-||..|+.++.
T Consensus 26 kA~e~L~~E~e~k~eEKkkiLaER~kPLn--id~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~ 103 (180)
T 1j1e_C 26 IAKQELEREAEERRGEKGRALSTRAQPLE--LAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCC--GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 34455566777888889999765543322 22234677899999998887776655 6677889999999998
Q ss_pred HHhc
Q 012079 188 TVTG 191 (471)
Q Consensus 188 e~~~ 191 (471)
++..
T Consensus 104 DLrG 107 (180)
T 1j1e_C 104 DLRG 107 (180)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 8864
No 18
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=39.59 E-value=1.3e+02 Score=25.34 Aligned_cols=75 Identities=8% Similarity=-0.037 Sum_probs=48.7
Q ss_pred HHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 119 AVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 119 ~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
..-..|..|...+..|...-.......+........+.-|...+..+...+.++...+.++...+..|.++...-
T Consensus 37 ~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~ 111 (150)
T 3ajw_A 37 QAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRL 111 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888876544322222223334556667777777777777777778888887777777665543
No 19
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=39.51 E-value=50 Score=27.18 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=33.0
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
..+...+...+..+++|++++..+..++..|+.+|.+.-.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4477777888888888888888888888888888888765
No 20
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.42 E-value=75 Score=25.87 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 159 APYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 159 ~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
.-.+.++.+|+.+-...+..|.-|+.+..|+...+
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999987643
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.30 E-value=46 Score=24.98 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 165 VAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 165 ~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+..|+.|+.....++..|+++++++.+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777654
No 22
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=34.76 E-value=85 Score=29.30 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHH-------HhhhhHHHHHHHHHHH
Q 012079 115 VADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRE-------LKAREVEVDNLKEKLK 187 (471)
Q Consensus 115 aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~e-------l~~kDsei~~Lk~~L~ 187 (471)
.|=.-+-.|-....+-|+.|......|-. +.. ..+++|.+.+.|+..+..|+.+ ++..+-||..|+.++.
T Consensus 24 kA~e~L~~E~e~k~eeKkkiLaER~kPLn--id~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVn 100 (182)
T 1ytz_I 24 LAVTEIEKEAAAKEVEKQNYLAEHSPPLS--LPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLF 100 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCC--CCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHH
Confidence 34455667888888999999765543332 223 5677999999998888877766 4555556666665555
Q ss_pred HHh
Q 012079 188 TVT 190 (471)
Q Consensus 188 e~~ 190 (471)
++.
T Consensus 101 DLr 103 (182)
T 1ytz_I 101 DLR 103 (182)
T ss_dssp GGT
T ss_pred HHH
Confidence 543
No 23
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.46 E-value=29 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=21.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 168 LKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 168 Le~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
|..+++.|+.||..|+++|+.+...
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4448889999999999999988764
No 24
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.42 E-value=92 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=31.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 153 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 153 e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
+++..+......-.+|...++.-..+|..|+++|+.+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666677777778889999999999999999998764
No 25
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.16 E-value=47 Score=33.45 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=29.8
Q ss_pred hHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 153 LVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 153 e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
.+..+|...+..++.|+..++..++.|..|+++|.++...
T Consensus 16 ~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 16 ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888888888888888888888777653
No 26
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=33.50 E-value=2.5e+02 Score=29.18 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=32.6
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 155 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 155 ~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+.+|...+..+..|+..+...++.|..|++++.++...
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888888999999999999999999999988764
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.48 E-value=2.7e+02 Score=32.17 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=51.1
Q ss_pred HHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHH
Q 012079 85 NEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAA 164 (471)
Q Consensus 85 ~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~ 164 (471)
.++-+.++.||..-.+|+.. ...+..++.-|-+--+.+.+|+..+.+.. .|...+-..++.+
T Consensus 956 ~~~~~e~~~L~~~l~~le~~-----~~e~~~~~~~v~~L~~e~~~l~~~~~~~~-------------ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMS-----EEEAKNATNRVLSLQEEIAKLRKELHQTQ-------------TEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 34455666666666666554 34444555555555557777777775542 2223333334444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 165 VAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 165 ~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
-.+|+.++.....+...|++++++++.
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777776663
No 28
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.22 E-value=37 Score=33.25 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=35.1
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
..+++..+...++..++|..+++....||..||++|+.+.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677778888888888999999999999999999998865
No 29
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.79 E-value=56 Score=26.52 Aligned_cols=37 Identities=5% Similarity=0.124 Sum_probs=25.2
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKT 188 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e 188 (471)
..+...+...+..+++|++++..++.++..|+.+|.+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777777777777777654
No 30
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.26 E-value=1e+02 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
+...+.-+..|+.+-..+..+|..|+.++..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555544
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.21 E-value=2.1e+02 Score=23.38 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=29.4
Q ss_pred CccCCCCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 143 RRCGGVSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 143 ~~~~~~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
|.++..-+......++..++..+++|+.++.....++..|+.++..+..
T Consensus 51 PvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 51 PVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp TTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322223345566777777777777777777777777666665544
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.95 E-value=83 Score=23.66 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=30.2
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKL 186 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L 186 (471)
+.+++..+..++..-..|++++.....|+..|+..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888999988888888888765
No 33
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.51 E-value=93 Score=24.99 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=37.1
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccCC
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNNNG 196 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~~l 196 (471)
+.++...++=-|.++++|...+-....+|+.|+.+|+.+..+-..+
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888899999999999999999999999999887754333
No 34
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.08 E-value=74 Score=26.25 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=25.0
Q ss_pred hhHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 159 APYEAAV--AELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 159 ~~yE~~~--~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
+-++++. ++|..++..|+.+|..||+.+.++..
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 67889999999999999998876643
No 35
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.30 E-value=61 Score=26.63 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=19.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHH
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLK 183 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk 183 (471)
.++.++.+|..-++|+.+++.++.++..|+
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777776666655555543
No 36
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=29.41 E-value=1.7e+02 Score=24.92 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=40.8
Q ss_pred HhHHHHhhcCCCCCCccCCCCchhhHHhhhhhHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHH
Q 012079 129 VLRERLKRRSFGGGRRCGGVSGGALVREVAAPYEAAVAELKRE-------LKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 129 ~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~yE~~~~kLe~e-------l~~kDsei~~Lk~~L~e~ 189 (471)
+-|+.|......|-. +.....+++|.+.+.|+..+.+|+++ ++..|-||..|+.+..++
T Consensus 24 EeKkkiLaER~~pL~--id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 24 ETKKKVLAERRKPLN--IDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHTCCCCC--CSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 367777655443321 22223467888888888877776655 677788999999998888
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.38 E-value=94 Score=23.77 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=14.6
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKL 186 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L 186 (471)
+...++..+.--.+|+.++.....|+..||.-|
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 38
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.76 E-value=1.1e+02 Score=26.72 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=58.2
Q ss_pred HHHHHHHhHHHHHHHHHHhh-cCCCCchhhhHhHHHHHHHHHhhhHhHHHH----hhcCCCCCCccCCCCchhhHHhhhh
Q 012079 85 NEVFDAVSAMKRAYVSLQEA-HCPWDPERMRVADVAVVGELRKIGVLRERL----KRRSFGGGRRCGGVSGGALVREVAA 159 (471)
Q Consensus 85 ~~lFa~VSslKaAY~qLQ~A-h~Pydpd~I~aAD~~vVseL~~Ls~LK~~y----~~~~~~~~~~~~~~a~~~e~~s~i~ 159 (471)
+.|..++..|.+-|=+|..= ---|..++ +.|+.| +.+|....+|+..- .+-..... ..---.+-..+++
T Consensus 5 ~~V~s~l~~LEaeyq~L~~kE~qrynqek-a~AE~A-~~~L~~~~~m~~~i~ek~~~i~~~~~----~~~yK~eY~~L~K 78 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLANQEEARFNEER-AQADAA-RQALAQNEQVYNELSQRAQRLQAEAN----TRFYKSQYQELAS 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT----SCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHH
Confidence 46777888888888887531 00144333 334444 34555444443322 21111110 0112356778899
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 160 PYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 160 ~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
.|....++|+++++.+..-|++- ++|.....+|
T Consensus 79 kYk~~~~~Ld~eI~~qe~iI~nF-e~Iq~~~~~~ 111 (119)
T 2avr_X 79 KYEDALKKLEAEMEQQKAVISDF-EKIQALRAGN 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccc
Confidence 99999999999998887766654 4455555554
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.50 E-value=44 Score=26.54 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
|+..|..+..|+........+...|+..+..+...|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555566666666666655543
No 40
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.25 E-value=80 Score=21.40 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=9.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 012079 168 LKRELKAREVEVDNLKEKLKT 188 (471)
Q Consensus 168 Le~el~~kDsei~~Lk~~L~e 188 (471)
||.++++...-+..|.+.++.
T Consensus 4 lee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 41
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.12 E-value=53 Score=32.98 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+...|..++..++.|+..++..+.+|..|++++.+++..
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778889999999999999999999998888664
No 42
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.02 E-value=90 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=22.0
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 155 REVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 155 ~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
|..++..+.-++.|..+|+.+..++++||.+...+..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3345555555566666666666666666666655544
No 43
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.01 E-value=1.1e+02 Score=25.82 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=39.0
Q ss_pred CchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccc
Q 012079 149 SGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGLNN 194 (471)
Q Consensus 149 a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n~ 194 (471)
++++.++..+..|+..++.|+.++......+..+++-++.+.....
T Consensus 1 ~~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 1 AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567788899999999999999999999999999988888776543
No 44
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=26.80 E-value=5.3e+02 Score=27.13 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 012079 77 VMELETVMNEVFDAVSAMKRAYVSLQE 103 (471)
Q Consensus 77 ~~~~eali~~lFa~VSslKaAY~qLQ~ 103 (471)
+..++......|.-|-.|+..|.+.|.
T Consensus 109 l~~lsn~Ts~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 109 VAKFSDTSTTMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhcccc
Confidence 333444455556677778888988886
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.73 E-value=43 Score=25.41 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 157 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 157 ~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
.+...|.-+..|+.+...+..+|..|+.++..+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555433
No 46
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=26.68 E-value=84 Score=26.97 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 158 AAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 158 i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
...+|.+..-||.|++.|..+|..+++..+++..
T Consensus 71 hQARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~ 104 (108)
T 1ykh_A 71 HQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHD 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999988765
No 47
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.66 E-value=2.5e+02 Score=29.73 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHH-------HHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCC
Q 012079 75 ERVMELETVMNE-------VFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGG 147 (471)
Q Consensus 75 ~~~~~~eali~~-------lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~ 147 (471)
..++.|+..|.+ .|.-|.+||..|.+-|.- +..- ..++.+-++.-|-.++|-+.
T Consensus 95 ~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~--------~~~n-~~~~~~s~~mle~~~~~~~~---------- 155 (461)
T 3ghg_B 95 NSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQ--------VKDN-ENVVNEYSSELEKHQLYIDE---------- 155 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH--------HHHH-HHTTSCHHHHHHHHHTHHHH----------
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCC--------CCcc-hhHHHHHHHHHHHHHHHHHh----------
Confidence 445555555554 488899999999988832 2222 44555555555555555432
Q ss_pred CCchhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 148 VSGGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 148 ~a~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
-++-+.+..++.|+..+....+.|..|+..+.....
T Consensus 156 --------~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 156 --------TVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp --------HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 235567777777888888888888888877765443
No 48
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.00 E-value=1.2e+02 Score=23.04 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=29.6
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLK 187 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~ 187 (471)
+.+++..+..++..-..|++++.....++..|+.-|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888888888888887764
No 49
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.93 E-value=81 Score=24.98 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=27.6
Q ss_pred chhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012079 150 GGALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 150 ~~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~ 189 (471)
.+.++...+..++.....|..+...+..+|..|..+|..+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666677777777777777777777777777776653
No 50
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=25.83 E-value=70 Score=34.80 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhHhHHHHHHHHHhhhHhHHHHhhcCCCCCCccCCCCchhhHHhhhhhH
Q 012079 82 TVMNEVFDAVSAMKRAYVSLQEAHCPWDPERMRVADVAVVGELRKIGVLRERLKRRSFGGGRRCGGVSGGALVREVAAPY 161 (471)
Q Consensus 82 ali~~lFa~VSslKaAY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~Ls~LK~~y~~~~~~~~~~~~~~a~~~e~~s~i~~y 161 (471)
.|=+++|-|-.|-..+-.+|... |...+. +++-+..|.+-+.. .+-.-.+||++-+++
T Consensus 409 glTAKdFRTwnASvta~~~L~~~--~~~~~s--------------~~ek~~~yn~Anr~------VAiLCNHqR~vpK~~ 466 (591)
T 1a31_A 409 GLTAKVFRTYNASITLQQQLKEL--TAPDEN--------------IPAKILSYNRANRA------VAILCNHQRAPPKTF 466 (591)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH--CCTTCC--------------HHHHHHHHHHHHHH------C--------------
T ss_pred CCceeeeccCchHHHHHHHHHhC--CCCCCC--------------HHHHHHHHHHHHHH------HHHHhCCCCCCCCCH
Confidence 45566777766666666666443 322222 33444444433221 111125688999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 162 EAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 162 E~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
+..+++|+.+++.+..+|..|+..|..+..
T Consensus 467 ~~~m~kl~~ki~~~~~~~~~~~~~l~~~~~ 496 (591)
T 1a31_A 467 EKSMMNLQTKIDAKKEQLADARRDLKSAKA 496 (591)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999987654
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.13 E-value=90 Score=22.61 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=15.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 012079 168 LKRELKAREVEVDNLKEKLKTV 189 (471)
Q Consensus 168 Le~el~~kDsei~~Lk~~L~e~ 189 (471)
|++|+++.+..+..||.+|+.+
T Consensus 25 leselqalekklaalksklqal 46 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777777777654
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.79 E-value=88 Score=23.64 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 166 AELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 166 ~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
..|+.++.....+-..|+.++..+...+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444443
No 53
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.28 E-value=98 Score=28.30 Aligned_cols=33 Identities=6% Similarity=0.248 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 160 PYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 160 ~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
+.|.-+++|+.+|..+|.+|..|++++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 36 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLETA 36 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 446678899999999999999999999999874
No 54
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.93 E-value=1.3e+02 Score=25.82 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=37.1
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 151 GALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 151 ~~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
+.++.+.+...|-...+|.++-+..+.+|..|++.|+++..
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999998865
No 55
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.76 E-value=83 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 166 AELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 166 ~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
++|..++..++.+|..||+.++++..
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999999998887753
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.56 E-value=80 Score=25.01 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 165 VAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 165 ~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
++.|+.+++....++..|+++...+...
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666555555443
No 57
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.35 E-value=1.5e+02 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=33.7
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHhcccc
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREV-------EVDNLKEKLKTVTGLNN 194 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDs-------ei~~Lk~~L~e~~~~n~ 194 (471)
.|.|..+..|+..+..|++++..... +...||.+++.+...+.
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~ 85 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRE 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777888888999999999887753 47889999888866543
No 58
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=22.14 E-value=74 Score=28.51 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 157 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 157 ~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
.+...+.+++.|+..+..++.+|..|+++|++++..
T Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T 1ca9_A 4 KIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEAS 39 (192)
T ss_dssp TTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456667777889999999999999999999998753
No 59
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.90 E-value=3e+02 Score=26.39 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc
Q 012079 159 APYEAAVAELKRELKAREVEVDNLKEKLKTVTGL 192 (471)
Q Consensus 159 ~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~ 192 (471)
...+......+++++..+.++..++.+|+.+...
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666677777777666543
No 60
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.10 E-value=1.5e+02 Score=25.09 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=32.4
Q ss_pred hhHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 012079 152 ALVREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVTG 191 (471)
Q Consensus 152 ~e~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~ 191 (471)
..+...++..+..+++|+.++..+...|..+.+.|+++..
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4477888888888888888888888888888888877653
No 61
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.09 E-value=3.6e+02 Score=23.31 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Q 012079 161 YEAAVAELKRELKAREVEVDNLKEKLKTVTGLN 193 (471)
Q Consensus 161 yE~~~~kLe~el~~kDsei~~Lk~~L~e~~~~n 193 (471)
.+....-|+.++...+.+|..|++.++.+...-
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777766665543
No 62
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.82 E-value=97 Score=24.50 Aligned_cols=34 Identities=3% Similarity=0.052 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 157 VAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 157 ~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
-|+..+...++|+.++.....++..|+.+|..+.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556667777888888888889999999887654
No 63
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.77 E-value=1.3e+02 Score=19.70 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=18.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 167 ELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 167 kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
.||-|-++.+..|..||+++..+.
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 367777888888888998887654
No 64
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=20.27 E-value=2.8e+02 Score=25.75 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHhhcCC
Q 012079 91 VSAMKRAYVSLQEAHCP 107 (471)
Q Consensus 91 VSslKaAY~qLQ~Ah~P 107 (471)
...||.||-+||.-+||
T Consensus 59 ~~eIk~aYr~L~~~~HP 75 (207)
T 3bvo_A 59 TAKLQHRYQQLQRLVHP 75 (207)
T ss_dssp HHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHCc
Confidence 45799999999999998
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.11 E-value=1.8e+02 Score=22.09 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 012079 154 VREVAAPYEAAVAELKRELKAREVEVDNLKEKLKTVT 190 (471)
Q Consensus 154 ~~s~i~~yE~~~~kLe~el~~kDsei~~Lk~~L~e~~ 190 (471)
.+..+...+.-+++|+.+...+..+|..|+.++..+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788888888888888888888876654
Done!