BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012080
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 179/439 (40%), Gaps = 61/439 (13%)
Query: 27 HMTPFLHLSNKLAEKGHKIT-----------ILLPRKAQ--TQLQHFNLHPDLITLHPLT 73
H P L L K+A + K+T L R + ++++N+H
Sbjct: 26 HAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVH---------- 75
Query: 74 VPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQV--EAVIKAAKP-RLLFYDIAYWM- 129
DGLP G ++ + P I L + AM V EAV + K L D +W
Sbjct: 76 ----DGLPKGYVSSGN-PREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFG 130
Query: 130 ATISKSLSIKCIKYNVVCAAS----IATALVPARNVPKDRPVTEAELAMPPAGYPSDTIV 185
A +++ + K + S + T L+ + K+ ++ +P G+P
Sbjct: 131 ADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLP--GFPE---- 184
Query: 186 LRRHEARE--LTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNK 243
L+ + E + I PF + ++ L ++A++I + I L E K
Sbjct: 185 LKASDLPEGVIKDIDVPFA---TMLHKMGLELPRANAVAINSFATIH-PLIENELNSKFK 240
Query: 244 PVFLTGPV-LHEPAKTPSEERW-DKWLGGFERSSVVYCAFGSQIIXXXXXXXXXXXXXXX 301
+ GP L P + S+E +WL E SSVVY +FGS +
Sbjct: 241 LLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEE 300
Query: 302 XXXXXXIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCG 361
+ + +E P GF ERTK +G + W Q+ IL+HSSVG F++H G
Sbjct: 301 CGFPFIWSFR-----GDPKEKLPKGFLERTKTKGKIVA-WAPQVEILKHSSVGVFLTHSG 354
Query: 362 FGSMWESLMSDCQIVLVPHLGDQILNTXXXXXXXXXXXXXXXXXNGWFSKESLCKAIKCV 421
+ S+ E ++ ++ P GDQ LNT NG +KES+ KA++
Sbjct: 355 WNSVLECIVGGVPMISRPFFGDQGLNT---ILTESVLEIGVGVDNGVLTKESIKKALELT 411
Query: 422 MDKESEVGNVVRRNHAKWK 440
M SE G ++R+ K K
Sbjct: 412 MS--SEKGGIMRQKIVKLK 428
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 97/245 (39%), Gaps = 18/245 (7%)
Query: 212 TTSLKESDAISIRTCHEIEGDLCEYIARQ--YNKPVFLTGPVLH---EPAKTPSEERWDK 266
T KE++ I + T E+E + + + PV+ GP+++ + AK E K
Sbjct: 201 TKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLK 260
Query: 267 WLGGFERSSVVYCAFGSQIIXXXXXXXXXXXXXXXXXXXXXIALKPPTGASTVE------ 320
WL SV+Y +FGS ++ P+G +
Sbjct: 261 WLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHS 320
Query: 321 -----EAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQI 375
P GF ERTK RG V W Q +L H S G F++HCG+ S ES++S +
Sbjct: 321 QTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPL 380
Query: 376 VLVPHLGDQILNTXXXXXXXXXXXXXXXXXNGWFSKESLCKAIKCVMDKESEVGNVVRRN 435
+ P +Q +N +G +E + + +K +M E E G VR
Sbjct: 381 IAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLM--EGEEGKGVRNK 438
Query: 436 HAKWK 440
+ K
Sbjct: 439 MKELK 443
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 14/228 (6%)
Query: 210 RITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGP--VLHEPAKTPSEERWDKW 267
R+ L ++ A+ I + E++ L + + K GP ++ P P+ +W
Sbjct: 206 RMGQVLPKATAVFINSFEELDDSLTNDLKSKL-KTYLNIGPFNLITPPPVVPNTTGCLQW 264
Query: 268 LGGFERSSVVYCAFGSQIIXXXXXXXXXXXXXXXXXXXXXIALKPPTGASTVEEAFPDGF 327
L + +SVVY +FG+ +L+ P+GF
Sbjct: 265 LKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR-----DKARVHLPEGF 319
Query: 328 AERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILN 387
E+T+G G+V W Q +L H +VG FV+HCG+ S+WES+ ++ P GDQ LN
Sbjct: 320 LEKTRGYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 388 TXXXXXXXXXXXXXXXXXNGWFSKESLCKAIKCVMDKESEVGNVVRRN 435
G F+K L ++ +E G +R N
Sbjct: 379 ---GRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK--GKKLREN 421
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 19/272 (6%)
Query: 204 GMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNK--PVFLTGPVLH---EPAKT 258
G Y ++ +++ I + T ++E + + K P++ GP+L +P
Sbjct: 198 GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK 257
Query: 259 PSEERWD---KWLGGFERSSVVYCAFGSQIIXXXXXXXXXXXXXXXXXXXXXIALKPPTG 315
+ + D KWL SVV+ FGS + +
Sbjct: 258 LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFL-----WS 312
Query: 316 ASTVEEAFPDGFAE--RTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDC 373
S ++ FP+GF E +G+G++CG W Q+ +L H ++G FVSHCG+ S+ ES+
Sbjct: 313 NSAEKKVFPEGFLEWMELEGKGMICG-WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGV 371
Query: 374 QIVLVPHLGDQILNTXXXXX---XXXXXXXXXXXXNGWFSKESLCKAIKCVMDKESEVGN 430
I+ P +Q LN + + E + K +K +MDK+S V
Sbjct: 372 PILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHK 431
Query: 431 VVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462
V+ + +V G + K + ++ G
Sbjct: 432 KVQEMKEMSRNAVVDGGSSLISVGKLIDDITG 463
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 19/272 (6%)
Query: 204 GMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNK--PVFLTGPVLH---EPAKT 258
G Y ++ +++ I + T ++E + + K P++ GP+L +P
Sbjct: 198 GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK 257
Query: 259 PSEERWD---KWLGGFERSSVVYCAFGSQIIXXXXXXXXXXXXXXXXXXXXXIALKPPTG 315
+ + D KWL SVV+ FGS + +
Sbjct: 258 LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFL-----WS 312
Query: 316 ASTVEEAFPDGFAE--RTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDC 373
S ++ FP+GF E +G+G++CG W Q+ +L H ++G FVSHCG+ S+ ES+
Sbjct: 313 NSAEKKVFPEGFLEWMELEGKGMICG-WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGV 371
Query: 374 QIVLVPHLGDQILNTXXXXX---XXXXXXXXXXXXNGWFSKESLCKAIKCVMDKESEVGN 430
I+ P +Q LN + + E + K +K +MDK+S V
Sbjct: 372 PILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHK 431
Query: 431 VVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462
V+ + +V G + K + ++ G
Sbjct: 432 KVQEMKEMSRNAVVDGGSSLISVGKLIDDITG 463
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 21/196 (10%)
Query: 205 MSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPVLHEPAKTPSEERW 264
+ F+ + + + I + T +E+E D+ ++ ++ GP+ +TP +
Sbjct: 213 LEFFIEVADRVNKDTTILLNTFNELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQL 271
Query: 265 D--------------KWLGGFERSSVVYCAFGSQIIXXXXXXXXXXXXXXXXXXXXXIAL 310
D WL E SVVY FGS + +
Sbjct: 272 DSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWII 331
Query: 311 KPP--TGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWES 368
+P G S + F F RG++ W Q +L H S+G F++HCG+ S ES
Sbjct: 332 RPDLVIGGSVI---FSSEFTNEIADRGLI-ASWCPQDKVLNHPSIGGFLTHCGWNSTTES 387
Query: 369 LMSDCQIVLVPHLGDQ 384
+ + ++ P DQ
Sbjct: 388 ICAGVPMLCWPFFADQ 403
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 340 EWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILN 387
+WV Q+ IL +S F++H G GS E+L + +V VP + +Q +N
Sbjct: 311 QWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMN 356
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 26 GHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLI-TLHPLTVPHVDGLPAGA 84
GH+ P L + +L +GH+++ + + Q++ P + ++ P + P
Sbjct: 24 GHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDSILPKESNPEESWPEDQ 83
Query: 85 ETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATI 132
E+A + L + R Q+E +P L+ YDIA W A +
Sbjct: 84 ESA-------MGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPV 124
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 340 EWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILN 387
+WV Q+ IL + + FV+H G G E L + ++ VP DQ N
Sbjct: 289 DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLP 50
I M A GH+ P L + +L +GH++T +P
Sbjct: 10 IAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIP 43
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 325 DGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQ 384
DG T G +W+ Q +L H F++H G ++E++ V +P DQ
Sbjct: 59 DGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
pdb|2GV9|B Chain B, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
Length = 1193
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 169 EAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHE 228
E ELA P AG+P D ++ +++ + Y+ TT+L+ S+ +C
Sbjct: 334 EDELAFPVAGHPEDLVI-------QISCL---------LYDLSTTALEHVLLFSLGSCDL 377
Query: 229 IEGDLCEYIARQYNKPVFL 247
E L E AR PV L
Sbjct: 378 PESHLNELAARGLPTPVVL 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,689,587
Number of Sequences: 62578
Number of extensions: 474036
Number of successful extensions: 1163
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 18
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)